Query 008748
Match_columns 555
No_of_seqs 617 out of 3270
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 16:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 3E-156 7E-161 1233.8 30.4 502 31-545 1-506 (506)
2 PF03141 Methyltransf_29: Puta 99.9 1.2E-23 2.6E-28 224.5 8.5 154 379-547 93-262 (506)
3 PLN02336 phosphoethanolamine N 99.7 5.7E-17 1.2E-21 177.6 14.1 307 156-502 38-369 (475)
4 PRK11088 rrmA 23S rRNA methylt 99.7 1.2E-16 2.5E-21 163.1 12.1 157 60-260 19-184 (272)
5 PF01209 Ubie_methyltran: ubiE 99.7 8.3E-17 1.8E-21 160.8 9.0 102 155-257 47-153 (233)
6 COG2226 UbiE Methylase involve 99.7 5.3E-16 1.2E-20 154.7 14.1 102 155-257 51-156 (238)
7 PLN02233 ubiquinone biosynthes 99.6 2.2E-14 4.8E-19 145.7 16.1 102 156-258 74-183 (261)
8 PLN02244 tocopherol O-methyltr 99.6 5.3E-14 1.1E-18 148.2 16.8 135 155-291 118-279 (340)
9 PF08241 Methyltransf_11: Meth 99.6 6.5E-15 1.4E-19 123.8 7.2 90 160-255 1-95 (95)
10 PTZ00098 phosphoethanolamine N 99.5 6.8E-14 1.5E-18 142.3 14.2 161 127-298 32-210 (263)
11 PF13489 Methyltransf_23: Meth 99.5 1.5E-14 3.2E-19 133.8 7.6 122 155-287 22-160 (161)
12 TIGR02752 MenG_heptapren 2-hep 99.5 3.3E-13 7.2E-18 133.7 16.7 103 156-259 46-153 (231)
13 PLN02396 hexaprenyldihydroxybe 99.5 8.9E-14 1.9E-18 145.2 12.3 136 155-292 131-291 (322)
14 PRK10258 biotin biosynthesis p 99.5 1.4E-13 3E-18 138.4 12.5 99 156-260 43-143 (251)
15 PRK14103 trans-aconitate 2-met 99.5 2.9E-13 6.2E-18 136.7 12.4 96 155-259 29-128 (255)
16 PRK11036 putative S-adenosyl-L 99.5 4E-13 8.8E-18 135.7 12.4 135 156-292 45-209 (255)
17 COG2227 UbiG 2-polyprenyl-3-me 99.4 8.2E-14 1.8E-18 137.5 6.3 103 156-260 60-164 (243)
18 PLN02336 phosphoethanolamine N 99.4 1.5E-12 3.2E-17 142.9 16.3 135 155-291 266-415 (475)
19 PRK15068 tRNA mo(5)U34 methylt 99.4 1.9E-12 4E-17 135.5 13.7 134 156-291 123-275 (322)
20 PRK11207 tellurite resistance 99.4 1.3E-12 2.9E-17 127.2 11.6 137 157-297 32-177 (197)
21 PRK11873 arsM arsenite S-adeno 99.4 3E-12 6.4E-17 130.4 14.1 135 155-290 77-230 (272)
22 PLN02490 MPBQ/MSBQ methyltrans 99.4 1.6E-12 3.4E-17 136.6 12.1 136 156-295 114-261 (340)
23 TIGR02072 BioC biotin biosynth 99.4 3.3E-12 7.2E-17 125.8 13.6 99 156-260 35-138 (240)
24 KOG1540 Ubiquinone biosynthesi 99.4 1.8E-12 3.8E-17 128.4 10.9 101 155-257 100-214 (296)
25 PRK08317 hypothetical protein; 99.4 9.8E-12 2.1E-16 122.2 16.1 148 133-290 5-176 (241)
26 PF13847 Methyltransf_31: Meth 99.4 1.3E-12 2.8E-17 121.5 9.0 101 156-259 4-112 (152)
27 PF12847 Methyltransf_18: Meth 99.4 1.6E-12 3.6E-17 113.6 8.4 101 156-257 2-111 (112)
28 TIGR00452 methyltransferase, p 99.4 4.6E-12 9.9E-17 131.9 13.0 135 156-292 122-275 (314)
29 TIGR00477 tehB tellurite resis 99.4 7.1E-12 1.5E-16 121.9 12.8 137 157-298 32-177 (195)
30 PRK15451 tRNA cmo(5)U34 methyl 99.3 1E-11 2.2E-16 125.1 13.3 101 156-259 57-166 (247)
31 PRK01683 trans-aconitate 2-met 99.3 4.6E-12 9.9E-17 127.8 10.3 99 155-260 31-133 (258)
32 smart00828 PKS_MT Methyltransf 99.3 9.2E-12 2E-16 122.8 11.8 133 158-293 2-147 (224)
33 PRK00107 gidB 16S rRNA methylt 99.3 1.9E-11 4E-16 118.5 13.2 120 156-290 46-169 (187)
34 TIGR00740 methyltransferase, p 99.3 2.7E-11 5.9E-16 121.1 14.3 102 156-260 54-164 (239)
35 PRK05785 hypothetical protein; 99.3 5.6E-12 1.2E-16 125.5 8.9 87 156-251 52-141 (226)
36 PRK00121 trmB tRNA (guanine-N( 99.3 1.1E-11 2.3E-16 121.4 10.4 122 156-286 41-177 (202)
37 PF13649 Methyltransf_25: Meth 99.3 1.3E-12 2.9E-17 113.1 3.5 92 159-251 1-101 (101)
38 PF02353 CMAS: Mycolic acid cy 99.3 3.7E-12 8E-17 130.3 6.7 141 155-300 62-227 (273)
39 PRK12335 tellurite resistance 99.3 2.4E-11 5.3E-16 125.0 11.5 131 157-292 122-261 (287)
40 PF08242 Methyltransf_12: Meth 99.3 1.3E-12 2.8E-17 112.4 1.4 93 160-253 1-99 (99)
41 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 2E-10 4.3E-15 112.2 15.1 101 155-258 39-144 (223)
42 TIGR00138 gidB 16S rRNA methyl 99.2 1.6E-10 3.5E-15 111.3 13.5 122 156-290 43-169 (181)
43 KOG4300 Predicted methyltransf 99.2 5.7E-11 1.2E-15 114.5 10.1 102 157-259 78-184 (252)
44 PF07021 MetW: Methionine bios 99.2 7.2E-11 1.6E-15 113.6 10.9 127 157-291 15-168 (193)
45 COG2230 Cfa Cyclopropane fatty 99.2 2E-10 4.4E-15 117.0 14.0 168 119-299 44-232 (283)
46 TIGR00091 tRNA (guanine-N(7)-) 99.2 9E-11 2E-15 114.0 10.8 122 157-287 18-155 (194)
47 PRK00216 ubiE ubiquinone/menaq 99.2 3.3E-10 7.2E-15 111.8 14.4 101 156-257 52-158 (239)
48 TIGR02021 BchM-ChlM magnesium 99.2 2.6E-10 5.6E-15 112.5 12.9 131 156-291 56-207 (219)
49 PRK08287 cobalt-precorrin-6Y C 99.2 7.2E-10 1.5E-14 106.7 15.7 121 156-290 32-156 (187)
50 PRK11188 rrmJ 23S rRNA methylt 99.2 2.3E-10 5E-15 112.7 11.9 92 156-259 52-167 (209)
51 COG4106 Tam Trans-aconitate me 99.2 8.7E-11 1.9E-15 114.0 8.2 119 154-284 29-151 (257)
52 PRK01544 bifunctional N5-gluta 99.1 6.4E-10 1.4E-14 123.1 16.2 290 156-515 139-476 (506)
53 TIGR00537 hemK_rel_arch HemK-r 99.1 4.4E-10 9.6E-15 107.4 12.8 122 157-290 21-165 (179)
54 PF03848 TehB: Tellurite resis 99.1 1.4E-10 3E-15 112.6 9.2 99 156-257 31-133 (192)
55 TIGR01983 UbiG ubiquinone bios 99.1 3.6E-10 7.8E-15 111.2 12.4 134 156-291 46-204 (224)
56 COG4976 Predicted methyltransf 99.1 5.3E-11 1.2E-15 116.2 6.3 132 155-292 125-267 (287)
57 KOG1270 Methyltransferases [Co 99.1 3.7E-11 8E-16 119.8 5.2 99 156-258 90-196 (282)
58 PRK11705 cyclopropane fatty ac 99.1 4.1E-11 8.9E-16 128.3 5.5 174 156-339 168-360 (383)
59 PRK06922 hypothetical protein; 99.1 1.7E-10 3.7E-15 128.7 9.5 101 156-258 419-538 (677)
60 PF05175 MTS: Methyltransferas 99.1 9.5E-11 2.1E-15 111.5 6.5 101 156-259 32-142 (170)
61 COG4123 Predicted O-methyltran 99.1 3.2E-10 7E-15 113.6 10.4 147 156-311 45-215 (248)
62 TIGR00406 prmA ribosomal prote 99.1 1.1E-09 2.3E-14 113.0 14.6 151 117-289 127-282 (288)
63 PLN02585 magnesium protoporphy 99.1 1.4E-09 3E-14 113.5 15.5 129 156-289 145-298 (315)
64 PRK04266 fibrillarin; Provisio 99.1 1.2E-09 2.6E-14 108.9 14.2 130 156-291 73-211 (226)
65 smart00138 MeTrc Methyltransfe 99.1 1.9E-10 4.1E-15 117.2 8.3 102 155-257 99-242 (264)
66 PRK09489 rsmC 16S ribosomal RN 99.1 3.1E-10 6.7E-15 119.7 10.0 101 157-261 198-307 (342)
67 PRK05134 bifunctional 3-demeth 99.1 8.5E-10 1.8E-14 109.6 12.6 133 156-290 49-205 (233)
68 PRK00517 prmA ribosomal protei 99.1 1.6E-09 3.5E-14 109.3 14.4 146 121-291 91-239 (250)
69 TIGR03587 Pse_Me-ase pseudamin 99.1 5.3E-10 1.2E-14 109.7 10.3 93 156-257 44-142 (204)
70 TIGR02469 CbiT precorrin-6Y C5 99.1 1.7E-09 3.7E-14 95.6 12.7 98 156-257 20-122 (124)
71 TIGR03534 RF_mod_PrmC protein- 99.1 3E-09 6.5E-14 106.3 15.7 122 157-289 89-240 (251)
72 PRK06202 hypothetical protein; 99.1 1.2E-09 2.6E-14 108.8 12.4 96 155-256 60-165 (232)
73 PF05401 NodS: Nodulation prot 99.1 4.7E-10 1E-14 108.3 8.6 101 154-258 42-147 (201)
74 PF08003 Methyltransf_9: Prote 99.0 1.3E-09 2.9E-14 111.4 11.8 133 155-291 115-268 (315)
75 TIGR01177 conserved hypothetic 99.0 2.1E-09 4.6E-14 112.8 13.6 124 156-291 183-316 (329)
76 COG2264 PrmA Ribosomal protein 99.0 1.8E-09 3.8E-14 111.0 12.4 150 123-291 136-289 (300)
77 PRK15001 SAM-dependent 23S rib 99.0 1.2E-09 2.7E-14 116.3 11.6 132 118-259 198-342 (378)
78 TIGR02081 metW methionine bios 99.0 1.8E-09 3.9E-14 104.6 11.8 123 157-290 15-167 (194)
79 TIGR03840 TMPT_Se_Te thiopurin 99.0 9.5E-10 2.1E-14 108.7 9.4 100 157-256 36-151 (213)
80 KOG1541 Predicted protein carb 99.0 1.4E-09 3E-14 106.0 10.0 118 155-284 50-181 (270)
81 PRK14968 putative methyltransf 99.0 3.5E-09 7.6E-14 100.9 12.7 124 156-289 24-172 (188)
82 PRK14967 putative methyltransf 99.0 8.2E-09 1.8E-13 102.3 15.5 121 157-287 38-181 (223)
83 PLN02232 ubiquinone biosynthes 99.0 1.3E-09 2.9E-14 102.7 8.8 78 179-257 1-81 (160)
84 PTZ00146 fibrillarin; Provisio 99.0 7.6E-09 1.6E-13 106.2 15.0 131 156-291 133-272 (293)
85 PRK07580 Mg-protoporphyrin IX 99.0 6.4E-09 1.4E-13 102.7 13.8 131 156-291 64-215 (230)
86 TIGR02716 C20_methyl_CrtF C-20 99.0 7.4E-09 1.6E-13 107.4 14.7 99 155-258 149-255 (306)
87 PF06325 PrmA: Ribosomal prote 99.0 2E-09 4.3E-14 111.2 10.3 154 116-291 128-284 (295)
88 PRK00377 cbiT cobalt-precorrin 99.0 5.2E-09 1.1E-13 101.9 12.4 116 156-284 41-164 (198)
89 COG2813 RsmC 16S RNA G1207 met 99.0 2.1E-09 4.6E-14 110.0 9.8 161 116-287 126-296 (300)
90 PRK13944 protein-L-isoaspartat 99.0 5.1E-09 1.1E-13 102.7 12.0 94 156-257 73-173 (205)
91 PF05219 DREV: DREV methyltran 99.0 3.3E-09 7.1E-14 106.4 10.6 166 110-289 53-239 (265)
92 PRK14121 tRNA (guanine-N(7)-)- 98.9 2.6E-09 5.5E-14 113.8 10.0 101 156-257 123-235 (390)
93 PRK13942 protein-L-isoaspartat 98.9 7.2E-09 1.6E-13 102.2 11.8 95 156-257 77-176 (212)
94 KOG1271 Methyltransferases [Ge 98.9 1E-08 2.2E-13 97.3 11.5 123 157-289 69-204 (227)
95 TIGR00080 pimt protein-L-isoas 98.9 1E-08 2.2E-13 101.2 11.9 94 156-257 78-177 (215)
96 KOG3010 Methyltransferase [Gen 98.9 1.3E-09 2.8E-14 107.6 4.8 114 157-284 35-158 (261)
97 PRK14966 unknown domain/N5-glu 98.9 4E-08 8.8E-13 105.4 16.3 124 157-290 253-405 (423)
98 PRK13255 thiopurine S-methyltr 98.9 8.3E-09 1.8E-13 102.4 10.4 98 157-255 39-153 (218)
99 PLN03075 nicotianamine synthas 98.8 1.7E-08 3.6E-13 104.0 11.1 102 155-257 123-233 (296)
100 cd02440 AdoMet_MTases S-adenos 98.8 1.4E-08 3.1E-13 84.5 8.6 98 158-256 1-103 (107)
101 PRK07402 precorrin-6B methylas 98.8 8.4E-08 1.8E-12 93.1 15.1 99 156-259 41-144 (196)
102 PF13659 Methyltransf_26: Meth 98.8 2E-09 4.4E-14 94.8 3.4 102 157-258 2-116 (117)
103 TIGR03438 probable methyltrans 98.8 2.7E-08 5.9E-13 103.3 11.5 101 157-257 65-177 (301)
104 PRK09328 N5-glutamine S-adenos 98.8 5.1E-08 1.1E-12 99.0 13.2 123 156-288 109-260 (275)
105 PF06080 DUF938: Protein of un 98.8 5.4E-08 1.2E-12 95.0 12.3 132 158-291 28-193 (204)
106 TIGR03533 L3_gln_methyl protei 98.8 6.7E-08 1.4E-12 99.6 13.4 121 156-288 122-272 (284)
107 PRK00312 pcm protein-L-isoaspa 98.8 5.7E-08 1.2E-12 95.4 12.1 96 156-258 79-176 (212)
108 TIGR00438 rrmJ cell division p 98.7 5.1E-08 1.1E-12 94.0 10.2 91 156-257 33-146 (188)
109 PF05148 Methyltransf_8: Hypot 98.7 4.5E-08 9.8E-13 95.4 9.4 111 156-289 73-184 (219)
110 TIGR00536 hemK_fam HemK family 98.7 1E-07 2.3E-12 98.0 12.5 121 157-288 116-267 (284)
111 TIGR03704 PrmC_rel_meth putati 98.7 4E-07 8.7E-12 92.2 15.5 121 157-289 88-239 (251)
112 PRK00811 spermidine synthase; 98.7 2E-07 4.3E-12 96.1 12.1 105 155-260 76-194 (283)
113 KOG2940 Predicted methyltransf 98.6 3E-08 6.5E-13 97.1 5.6 133 156-292 73-229 (325)
114 PRK11805 N5-glutamine S-adenos 98.6 2.7E-07 5.9E-12 96.2 12.8 118 157-286 135-282 (307)
115 PF05891 Methyltransf_PK: AdoM 98.6 2.7E-08 5.9E-13 97.6 4.5 139 155-293 55-204 (218)
116 KOG3045 Predicted RNA methylas 98.6 1.8E-07 3.9E-12 93.2 10.0 112 155-290 180-291 (325)
117 PRK10901 16S rRNA methyltransf 98.6 4.4E-07 9.5E-12 98.8 13.3 125 156-286 245-397 (427)
118 PF02390 Methyltransf_4: Putat 98.6 2.8E-07 6.2E-12 89.9 9.7 121 158-287 20-157 (195)
119 PRK14901 16S rRNA methyltransf 98.6 4.6E-07 9.9E-12 98.8 12.4 125 156-286 253-409 (434)
120 PRK13256 thiopurine S-methyltr 98.5 3.7E-07 8E-12 91.0 10.2 102 156-257 44-163 (226)
121 PRK13943 protein-L-isoaspartat 98.5 4.9E-07 1.1E-11 94.7 11.3 94 156-257 81-180 (322)
122 PF03291 Pox_MCEL: mRNA cappin 98.5 2.4E-07 5.2E-12 97.4 8.4 105 155-260 62-189 (331)
123 PRK14904 16S rRNA methyltransf 98.5 8.4E-07 1.8E-11 97.0 12.6 103 156-260 251-380 (445)
124 PRK04457 spermidine synthase; 98.5 5.1E-07 1.1E-11 92.0 10.0 103 155-257 66-177 (262)
125 TIGR00563 rsmB ribosomal RNA s 98.5 5.5E-07 1.2E-11 97.9 10.7 104 156-260 239-371 (426)
126 KOG1975 mRNA cap methyltransfe 98.5 3.2E-07 6.9E-12 94.1 7.7 104 156-260 118-240 (389)
127 PF01135 PCMT: Protein-L-isoas 98.5 3.8E-07 8.2E-12 90.0 7.8 111 133-258 58-173 (209)
128 TIGR00417 speE spermidine synt 98.4 1.8E-06 4E-11 88.3 12.7 105 155-260 72-189 (270)
129 PLN02366 spermidine synthase 98.4 1.7E-06 3.6E-11 90.3 12.4 106 155-261 91-210 (308)
130 COG2242 CobL Precorrin-6B meth 98.4 3.9E-06 8.4E-11 80.7 13.7 119 155-287 34-158 (187)
131 PRK01581 speE spermidine synth 98.4 2.1E-06 4.6E-11 90.7 13.0 158 120-288 120-295 (374)
132 PHA03411 putative methyltransf 98.4 8E-07 1.7E-11 90.7 9.5 124 157-290 66-214 (279)
133 TIGR00446 nop2p NOL1/NOP2/sun 98.4 9.6E-07 2.1E-11 90.0 10.1 105 156-260 72-202 (264)
134 PRK14902 16S rRNA methyltransf 98.4 1.6E-06 3.5E-11 94.8 12.5 124 156-286 251-404 (444)
135 PRK14903 16S rRNA methyltransf 98.4 6.8E-07 1.5E-11 97.4 9.4 104 156-260 238-369 (431)
136 smart00650 rADc Ribosomal RNA 98.4 9.7E-07 2.1E-11 83.7 8.7 95 156-256 14-112 (169)
137 COG2890 HemK Methylase of poly 98.4 2.4E-06 5.3E-11 88.0 12.2 120 158-289 113-262 (280)
138 PRK03612 spermidine synthase; 98.4 2.2E-06 4.8E-11 95.6 12.7 125 155-284 297-438 (521)
139 PRK13168 rumA 23S rRNA m(5)U19 98.4 3.9E-06 8.5E-11 91.7 14.3 123 156-292 298-426 (443)
140 PRK11783 rlmL 23S rRNA m(2)G24 98.4 8.3E-07 1.8E-11 102.3 9.2 126 156-290 539-680 (702)
141 COG2519 GCD14 tRNA(1-methylade 98.4 4.6E-06 1E-10 83.6 13.0 116 156-286 95-216 (256)
142 COG2518 Pcm Protein-L-isoaspar 98.3 2.8E-06 6.1E-11 83.2 10.2 96 155-258 72-170 (209)
143 TIGR00479 rumA 23S rRNA (uraci 98.3 8.6E-06 1.9E-10 88.7 13.6 123 156-291 293-421 (431)
144 KOG2361 Predicted methyltransf 98.3 1.6E-06 3.4E-11 86.0 6.9 121 127-258 49-184 (264)
145 COG0220 Predicted S-adenosylme 98.3 2E-06 4.4E-11 85.8 7.8 99 157-257 50-164 (227)
146 PRK11727 23S rRNA mA1618 methy 98.3 1.3E-05 2.7E-10 84.1 13.8 98 130-227 89-197 (321)
147 PLN02781 Probable caffeoyl-CoA 98.2 3.3E-06 7.1E-11 84.7 8.6 97 156-257 69-178 (234)
148 TIGR00478 tly hemolysin TlyA f 98.2 1.1E-05 2.5E-10 80.6 12.4 119 155-288 75-215 (228)
149 PLN02672 methionine S-methyltr 98.2 6E-06 1.3E-10 97.9 11.9 123 156-287 119-300 (1082)
150 PHA03412 putative methyltransf 98.2 3.2E-06 6.9E-11 84.5 8.0 90 157-252 51-158 (241)
151 PF07942 N2227: N2227-like pro 98.2 1.2E-05 2.5E-10 82.2 11.9 133 155-290 56-242 (270)
152 PRK03522 rumB 23S rRNA methylu 98.2 1.3E-05 2.9E-10 83.7 12.0 119 157-291 175-297 (315)
153 PF00891 Methyltransf_2: O-met 98.2 4.1E-06 9E-11 83.8 7.7 94 154-258 99-200 (241)
154 PF01739 CheR: CheR methyltran 98.2 3.8E-06 8.2E-11 82.1 7.1 103 155-258 31-176 (196)
155 PRK15128 23S rRNA m(5)C1962 me 98.2 1.4E-05 3E-10 86.2 12.1 101 156-258 221-340 (396)
156 COG1041 Predicted DNA modifica 98.2 2E-05 4.4E-10 82.5 12.6 123 156-291 198-331 (347)
157 PRK10909 rsmD 16S rRNA m(2)G96 98.2 1.9E-05 4.1E-10 77.4 11.7 123 127-259 32-161 (199)
158 COG0500 SmtA SAM-dependent met 98.1 2E-05 4.4E-10 68.0 9.6 99 159-260 52-158 (257)
159 PRK10611 chemotaxis methyltran 98.1 1.1E-05 2.4E-10 83.3 8.8 101 157-257 117-262 (287)
160 PF05724 TPMT: Thiopurine S-me 98.1 1.5E-05 3.3E-10 79.1 9.5 133 156-290 38-190 (218)
161 PF11968 DUF3321: Putative met 98.1 1.4E-05 3E-10 78.6 8.9 119 156-291 52-182 (219)
162 PRK01544 bifunctional N5-gluta 98.1 1.7E-05 3.6E-10 88.2 10.6 122 155-286 347-484 (506)
163 PF12147 Methyltransf_20: Puta 98.1 2.5E-05 5.3E-10 79.8 10.8 135 152-288 132-296 (311)
164 PF10294 Methyltransf_16: Puta 98.0 1.2E-05 2.5E-10 77.0 7.6 103 155-260 45-159 (173)
165 PF08704 GCD14: tRNA methyltra 98.0 2.9E-05 6.4E-10 78.5 10.8 118 156-288 41-169 (247)
166 KOG3987 Uncharacterized conser 98.0 1E-05 2.2E-10 78.5 7.0 130 114-257 77-207 (288)
167 KOG2899 Predicted methyltransf 98.0 2.6E-05 5.7E-10 77.5 9.4 102 155-256 58-208 (288)
168 TIGR02085 meth_trns_rumB 23S r 98.0 5.1E-05 1.1E-09 81.3 12.5 120 157-292 235-358 (374)
169 PF08241 Methyltransf_11: Meth 98.0 2.3E-06 5E-11 71.5 1.1 91 404-500 1-95 (95)
170 COG4122 Predicted O-methyltran 98.0 3.5E-05 7.6E-10 76.4 9.2 98 155-256 59-165 (219)
171 PLN02476 O-methyltransferase 97.9 2.6E-05 5.7E-10 80.1 8.4 96 156-256 119-227 (278)
172 KOG1269 SAM-dependent methyltr 97.9 2.3E-05 4.9E-10 83.4 7.0 97 158-255 113-213 (364)
173 PF01596 Methyltransf_3: O-met 97.9 3.3E-05 7.1E-10 76.1 7.4 97 156-257 46-155 (205)
174 KOG2904 Predicted methyltransf 97.8 0.0001 2.3E-09 74.5 10.4 121 132-258 130-286 (328)
175 COG2521 Predicted archaeal met 97.8 2.5E-05 5.4E-10 77.3 5.6 132 155-290 134-277 (287)
176 KOG1499 Protein arginine N-met 97.8 2.3E-05 5E-10 81.8 5.5 97 156-254 61-164 (346)
177 KOG1331 Predicted methyltransf 97.8 1.2E-05 2.7E-10 81.6 3.1 100 156-262 46-148 (293)
178 PRK14896 ksgA 16S ribosomal RN 97.8 6.8E-05 1.5E-09 76.2 8.1 68 156-227 30-99 (258)
179 PRK00274 ksgA 16S ribosomal RN 97.8 5.4E-05 1.2E-09 77.6 7.2 68 156-226 43-112 (272)
180 PRK00107 gidB 16S rRNA methylt 97.7 0.00013 2.8E-09 70.9 8.9 153 378-546 27-187 (187)
181 PF05185 PRMT5: PRMT5 arginine 97.7 5.5E-05 1.2E-09 82.8 6.5 96 156-254 187-294 (448)
182 KOG1661 Protein-L-isoaspartate 97.7 0.00029 6.3E-09 68.9 10.2 93 157-256 84-192 (237)
183 COG1352 CheR Methylase of chem 97.7 0.00016 3.5E-09 73.9 9.0 102 155-257 96-241 (268)
184 PLN02823 spermine synthase 97.7 0.00033 7.2E-09 74.0 11.6 102 155-257 103-220 (336)
185 PF01170 UPF0020: Putative RNA 97.7 0.00064 1.4E-08 65.5 12.4 118 156-290 29-171 (179)
186 COG2263 Predicted RNA methylas 97.6 0.00011 2.5E-09 70.7 6.8 119 155-289 45-167 (198)
187 PF13489 Methyltransf_23: Meth 97.6 9.4E-06 2E-10 74.8 -0.7 96 398-504 21-117 (161)
188 TIGR00755 ksgA dimethyladenosi 97.6 0.00033 7.1E-09 70.9 10.4 67 156-226 30-101 (253)
189 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00011 2.4E-09 74.3 6.3 96 156-255 80-188 (247)
190 KOG3191 Predicted N6-DNA-methy 97.5 0.0013 2.7E-08 63.2 11.8 122 156-287 44-190 (209)
191 PRK05031 tRNA (uracil-5-)-meth 97.5 0.00066 1.4E-08 72.5 10.9 119 157-292 208-345 (362)
192 PTZ00338 dimethyladenosine tra 97.5 0.00033 7.2E-09 72.7 8.3 69 156-226 37-108 (294)
193 COG3963 Phospholipid N-methylt 97.5 0.00046 1E-08 65.3 8.3 103 155-257 48-156 (194)
194 PF02527 GidB: rRNA small subu 97.4 0.0014 3E-08 63.6 11.2 120 158-290 51-175 (184)
195 COG0421 SpeE Spermidine syntha 97.4 0.0012 2.5E-08 68.3 11.2 110 154-264 75-197 (282)
196 PRK04338 N(2),N(2)-dimethylgua 97.4 0.00032 6.9E-09 75.4 7.3 98 157-259 59-160 (382)
197 PRK10258 biotin biosynthesis p 97.4 0.00033 7E-09 70.5 6.7 101 395-502 38-140 (251)
198 PF02475 Met_10: Met-10+ like- 97.4 0.00039 8.5E-09 68.2 6.6 125 114-254 70-199 (200)
199 PRK11933 yebU rRNA (cytosine-C 97.3 0.001 2.2E-08 73.4 10.0 105 155-260 113-245 (470)
200 PF09243 Rsm22: Mitochondrial 97.3 0.0024 5.3E-08 65.6 12.0 123 155-288 33-166 (274)
201 TIGR02143 trmA_only tRNA (urac 97.3 0.0014 3.1E-08 69.8 10.7 117 158-291 200-335 (353)
202 smart00828 PKS_MT Methyltransf 97.3 0.00016 3.5E-09 71.2 2.7 95 401-503 1-105 (224)
203 TIGR00095 RNA methyltransferas 97.2 0.0013 2.8E-08 63.9 8.9 99 157-258 51-160 (189)
204 PRK04148 hypothetical protein; 97.2 0.001 2.2E-08 61.2 7.3 81 156-247 17-101 (134)
205 PRK00536 speE spermidine synth 97.2 0.0028 6E-08 64.8 11.2 119 154-286 71-195 (262)
206 COG1092 Predicted SAM-dependen 97.2 0.0024 5.1E-08 68.8 10.7 105 156-260 218-339 (393)
207 KOG3178 Hydroxyindole-O-methyl 97.2 0.0018 3.8E-08 68.0 9.4 96 155-258 177-276 (342)
208 TIGR03439 methyl_EasF probable 97.2 0.0028 6E-08 66.6 10.8 101 157-257 78-197 (319)
209 PLN02233 ubiquinone biosynthes 97.1 0.00054 1.2E-08 69.8 5.0 96 401-502 75-182 (261)
210 KOG3201 Uncharacterized conser 97.1 0.00023 5.1E-09 66.8 1.7 133 156-298 30-175 (201)
211 PRK11760 putative 23S rRNA C24 97.1 0.013 2.8E-07 61.8 14.6 117 155-283 211-332 (357)
212 KOG2352 Predicted spermine/spe 97.1 0.0018 3.9E-08 70.5 8.5 98 158-257 51-161 (482)
213 PLN02244 tocopherol O-methyltr 97.1 0.00032 6.8E-09 74.3 2.7 97 399-502 118-223 (340)
214 KOG2798 Putative trehalase [Ca 97.1 0.0043 9.4E-08 64.1 10.7 73 218-291 258-338 (369)
215 COG0357 GidB Predicted S-adeno 97.0 0.011 2.3E-07 58.7 12.8 123 156-291 68-196 (215)
216 PRK09489 rsmC 16S ribosomal RN 97.0 0.0085 1.8E-07 63.6 12.9 97 402-501 199-302 (342)
217 TIGR00138 gidB 16S rRNA methyl 97.0 0.00064 1.4E-08 65.6 4.0 111 401-522 44-163 (181)
218 PRK14103 trans-aconitate 2-met 97.0 0.00079 1.7E-08 68.0 4.8 99 395-501 25-125 (255)
219 COG2265 TrmA SAM-dependent met 97.0 0.007 1.5E-07 66.2 12.3 121 155-288 293-418 (432)
220 PF02353 CMAS: Mycolic acid cy 97.0 0.00039 8.5E-09 71.4 2.5 110 384-502 51-166 (273)
221 PRK15068 tRNA mo(5)U34 methylt 97.0 0.00072 1.6E-08 71.1 4.3 93 401-501 124-225 (322)
222 PF01564 Spermine_synth: Sperm 96.9 0.0013 2.8E-08 66.6 5.9 126 155-285 76-215 (246)
223 KOG1663 O-methyltransferase [S 96.9 0.0045 9.9E-08 61.5 9.3 96 156-256 74-182 (237)
224 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.00045 9.7E-09 70.2 2.3 134 155-289 56-238 (256)
225 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0018 3.8E-08 67.3 6.7 120 133-260 32-186 (311)
226 COG2520 Predicted methyltransf 96.9 0.0081 1.8E-07 63.5 11.5 149 118-283 161-313 (341)
227 PTZ00098 phosphoethanolamine N 96.8 0.001 2.2E-08 67.9 4.0 97 401-503 54-157 (263)
228 TIGR02987 met_A_Alw26 type II 96.8 0.0063 1.4E-07 68.1 10.4 24 241-264 180-203 (524)
229 TIGR02752 MenG_heptapren 2-hep 96.8 0.0019 4E-08 64.0 5.4 97 401-503 47-152 (231)
230 TIGR00477 tehB tellurite resis 96.8 0.00077 1.7E-08 65.6 2.5 93 401-500 32-131 (195)
231 PRK08317 hypothetical protein; 96.8 0.0018 4E-08 63.4 5.2 98 399-502 19-124 (241)
232 PRK11705 cyclopropane fatty ac 96.7 0.0018 4E-08 69.7 4.7 95 401-502 169-267 (383)
233 TIGR00308 TRM1 tRNA(guanine-26 96.6 0.004 8.7E-08 66.8 6.9 96 157-257 46-147 (374)
234 PF01269 Fibrillarin: Fibrilla 96.6 0.021 4.6E-07 56.8 11.2 132 155-291 73-213 (229)
235 COG0030 KsgA Dimethyladenosine 96.6 0.017 3.7E-07 58.8 10.9 69 156-226 31-102 (259)
236 COG0293 FtsJ 23S rRNA methylas 96.6 0.024 5.2E-07 55.8 11.5 91 156-257 46-159 (205)
237 TIGR00452 methyltransferase, p 96.6 0.003 6.6E-08 66.2 5.5 94 401-501 123-224 (314)
238 PRK11036 putative S-adenosyl-L 96.6 0.00092 2E-08 67.6 1.6 93 401-501 46-148 (255)
239 PRK11207 tellurite resistance 96.6 0.0011 2.3E-08 64.7 1.9 93 401-500 32-132 (197)
240 COG4627 Uncharacterized protei 96.6 0.0017 3.7E-08 60.8 3.1 75 210-285 38-133 (185)
241 PRK08287 cobalt-precorrin-6Y C 96.6 0.0026 5.7E-08 61.1 4.5 113 399-521 31-151 (187)
242 PF10672 Methyltrans_SAM: S-ad 96.5 0.0023 5.1E-08 66.1 4.3 104 156-259 124-240 (286)
243 TIGR02072 BioC biotin biosynth 96.5 0.0034 7.4E-08 61.6 5.4 96 401-502 36-135 (240)
244 KOG1500 Protein arginine N-met 96.5 0.0045 9.9E-08 64.3 6.3 96 156-256 178-281 (517)
245 KOG3420 Predicted RNA methylas 96.5 0.0019 4E-08 59.9 3.1 71 156-227 49-122 (185)
246 TIGR00537 hemK_rel_arch HemK-r 96.5 0.0044 9.5E-08 59.1 5.8 116 401-522 21-161 (179)
247 COG1189 Predicted rRNA methyla 96.5 0.089 1.9E-06 52.8 14.9 126 154-289 78-223 (245)
248 PF01728 FtsJ: FtsJ-like methy 96.5 0.0029 6.3E-08 60.4 4.3 91 155-257 23-139 (181)
249 PRK00377 cbiT cobalt-precorrin 96.5 0.0059 1.3E-07 59.4 6.5 147 366-522 8-166 (198)
250 PF01209 Ubie_methyltran: ubiE 96.5 0.0019 4.1E-08 64.9 3.0 115 378-503 33-154 (233)
251 PRK00121 trmB tRNA (guanine-N( 96.4 0.0028 6.2E-08 62.0 4.0 122 399-522 40-177 (202)
252 PLN02396 hexaprenyldihydroxybe 96.4 0.0028 6.1E-08 66.7 4.0 94 402-502 134-235 (322)
253 PF08123 DOT1: Histone methyla 96.4 0.0073 1.6E-07 59.6 6.6 120 126-255 21-156 (205)
254 PRK12335 tellurite resistance 96.4 0.0014 2.9E-08 67.7 1.3 111 402-521 123-254 (287)
255 PRK15001 SAM-dependent 23S rib 96.4 0.12 2.5E-06 55.7 16.0 94 158-257 47-142 (378)
256 PRK01683 trans-aconitate 2-met 96.3 0.0044 9.5E-08 62.5 4.9 119 395-521 27-153 (258)
257 TIGR00406 prmA ribosomal prote 96.3 0.0049 1.1E-07 63.7 5.2 111 401-521 161-278 (288)
258 PF08242 Methyltransf_12: Meth 96.3 0.0024 5.2E-08 54.5 2.4 90 404-498 1-99 (99)
259 smart00138 MeTrc Methyltransfe 96.3 0.0066 1.4E-07 62.0 5.7 134 368-505 68-245 (264)
260 COG3897 Predicted methyltransf 96.2 0.017 3.8E-07 56.2 7.9 99 155-259 79-181 (218)
261 PRK00517 prmA ribosomal protei 96.2 0.0088 1.9E-07 60.5 6.3 107 401-521 121-233 (250)
262 PF12847 Methyltransf_18: Meth 96.2 0.0021 4.5E-08 55.8 1.4 96 402-502 4-111 (112)
263 PRK11088 rrmA 23S rRNA methylt 96.2 0.011 2.4E-07 60.4 6.7 104 399-514 85-194 (272)
264 KOG2915 tRNA(1-methyladenosine 96.1 0.077 1.7E-06 54.2 12.3 129 136-287 94-232 (314)
265 KOG1709 Guanidinoacetate methy 96.1 0.024 5.2E-07 56.0 8.4 110 133-257 88-206 (271)
266 PF03602 Cons_hypoth95: Conser 96.1 0.005 1.1E-07 59.6 3.5 131 118-259 12-155 (183)
267 COG0144 Sun tRNA and rRNA cyto 96.0 0.031 6.7E-07 59.7 9.6 105 155-260 156-291 (355)
268 KOG0820 Ribosomal RNA adenine 96.0 0.022 4.8E-07 58.0 7.9 70 155-226 58-130 (315)
269 TIGR01934 MenG_MenH_UbiE ubiqu 96.0 0.009 1.9E-07 58.1 5.1 98 399-502 39-143 (223)
270 PRK14968 putative methyltransf 96.0 0.01 2.2E-07 56.3 5.3 117 400-521 24-168 (188)
271 PF04816 DUF633: Family of unk 96.0 0.056 1.2E-06 53.3 10.5 119 159-291 1-125 (205)
272 PF05401 NodS: Nodulation prot 95.9 0.0026 5.7E-08 62.0 0.8 114 379-502 24-146 (201)
273 PRK11783 rlmL 23S rRNA m(2)G24 95.9 0.046 9.9E-07 63.5 11.0 117 401-523 540-677 (702)
274 PF13679 Methyltransf_32: Meth 95.9 0.054 1.2E-06 49.9 9.4 98 154-260 24-134 (141)
275 PF05958 tRNA_U5-meth_tr: tRNA 95.8 0.017 3.7E-07 61.5 6.5 55 158-212 199-255 (352)
276 PLN02668 indole-3-acetate carb 95.8 0.051 1.1E-06 58.5 10.0 46 214-260 157-240 (386)
277 TIGR00740 methyltransferase, p 95.8 0.0048 1E-07 61.7 2.0 96 401-503 55-162 (239)
278 PRK15451 tRNA cmo(5)U34 methyl 95.7 0.0063 1.4E-07 61.4 2.5 97 401-503 58-165 (247)
279 TIGR01983 UbiG ubiquinone bios 95.7 0.018 4E-07 56.4 5.7 93 400-502 46-149 (224)
280 PRK06202 hypothetical protein; 95.6 0.028 6.2E-07 55.8 6.8 103 396-502 57-166 (232)
281 PRK05785 hypothetical protein; 95.6 0.018 3.9E-07 57.4 5.4 106 378-496 35-141 (226)
282 PTZ00146 fibrillarin; Provisio 95.5 0.0072 1.6E-07 62.6 2.3 98 395-501 130-236 (293)
283 PRK11188 rrmJ 23S rRNA methylt 95.5 0.025 5.5E-07 55.8 6.0 129 401-545 53-206 (209)
284 COG4262 Predicted spermidine s 95.5 0.068 1.5E-06 56.6 9.1 159 117-286 256-432 (508)
285 COG0742 N6-adenine-specific me 95.4 0.15 3.2E-06 49.6 10.8 132 118-258 13-155 (187)
286 PRK00050 16S rRNA m(4)C1402 me 95.3 0.021 4.6E-07 59.4 5.0 69 157-227 21-98 (296)
287 COG1889 NOP1 Fibrillarin-like 95.3 0.55 1.2E-05 46.2 14.2 133 154-291 75-215 (231)
288 PRK05134 bifunctional 3-demeth 95.3 0.018 3.8E-07 57.1 4.1 95 401-502 50-151 (233)
289 TIGR00438 rrmJ cell division p 95.3 0.02 4.4E-07 55.0 4.4 129 401-544 34-186 (188)
290 PRK09328 N5-glutamine S-adenos 95.2 0.04 8.6E-07 55.9 6.5 135 401-545 110-275 (275)
291 COG0116 Predicted N6-adenine-s 95.2 0.22 4.7E-06 53.4 12.1 99 157-259 193-346 (381)
292 PRK11873 arsM arsenite S-adeno 95.2 0.013 2.9E-07 59.6 2.9 95 401-502 79-183 (272)
293 TIGR03534 RF_mod_PrmC protein- 95.2 0.018 4E-07 57.3 3.8 117 401-521 89-236 (251)
294 PF05148 Methyltransf_8: Hypot 95.1 0.05 1.1E-06 53.7 6.6 104 400-521 73-180 (219)
295 PRK13699 putative methylase; P 95.0 0.059 1.3E-06 53.9 6.9 82 205-299 4-101 (227)
296 TIGR00091 tRNA (guanine-N(7)-) 94.9 0.024 5.1E-07 55.0 3.7 117 401-521 18-153 (194)
297 PF03492 Methyltransf_7: SAM d 94.9 0.055 1.2E-06 57.3 6.5 80 154-234 15-121 (334)
298 KOG2187 tRNA uracil-5-methyltr 94.8 0.043 9.4E-07 60.3 5.8 86 117-211 351-441 (534)
299 PRK04266 fibrillarin; Provisio 94.8 0.045 9.7E-07 54.8 5.4 138 395-546 70-226 (226)
300 cd02440 AdoMet_MTases S-adenos 94.8 0.025 5.4E-07 46.3 3.1 95 402-501 1-103 (107)
301 PRK13944 protein-L-isoaspartat 94.8 0.019 4E-07 56.3 2.6 90 401-501 74-172 (205)
302 PRK06922 hypothetical protein; 94.7 0.015 3.2E-07 66.1 2.0 101 401-503 420-538 (677)
303 PF09445 Methyltransf_15: RNA 94.7 0.045 9.7E-07 52.1 4.7 68 158-226 2-76 (163)
304 COG2226 UbiE Methylase involve 94.6 0.039 8.4E-07 55.7 4.2 114 378-503 37-157 (238)
305 COG4076 Predicted RNA methylas 94.5 0.052 1.1E-06 52.6 4.8 91 157-254 34-132 (252)
306 PLN02490 MPBQ/MSBQ methyltrans 94.5 0.025 5.4E-07 60.0 3.0 115 401-521 115-251 (340)
307 PF00398 RrnaAD: Ribosomal RNA 94.5 0.064 1.4E-06 54.7 5.7 103 133-249 16-123 (262)
308 PF00891 Methyltransf_2: O-met 94.4 0.029 6.3E-07 56.1 3.0 102 394-503 95-200 (241)
309 PF04672 Methyltransf_19: S-ad 94.4 0.082 1.8E-06 54.1 6.2 105 155-259 68-192 (267)
310 PF13847 Methyltransf_31: Meth 94.3 0.039 8.3E-07 51.0 3.5 96 401-504 5-112 (152)
311 TIGR02716 C20_methyl_CrtF C-20 94.3 0.031 6.8E-07 58.0 3.1 103 395-502 145-254 (306)
312 KOG3115 Methyltransferase-like 94.3 0.11 2.3E-06 51.1 6.3 100 158-257 63-183 (249)
313 PF01728 FtsJ: FtsJ-like methy 94.2 0.036 7.9E-07 52.8 3.1 142 395-545 19-180 (181)
314 PRK14967 putative methyltransf 94.2 0.065 1.4E-06 53.1 5.0 117 401-521 38-179 (223)
315 COG4798 Predicted methyltransf 94.1 0.49 1.1E-05 46.3 10.5 136 155-292 48-207 (238)
316 PRK00216 ubiE ubiquinone/menaq 94.0 0.048 1E-06 53.6 3.6 96 401-502 53-158 (239)
317 TIGR00536 hemK_fam HemK family 93.8 0.12 2.7E-06 53.2 6.3 136 401-546 116-283 (284)
318 PRK13942 protein-L-isoaspartat 93.7 0.036 7.8E-07 54.7 2.1 87 401-501 78-175 (212)
319 TIGR00080 pimt protein-L-isoas 93.7 0.034 7.3E-07 54.8 1.8 86 401-500 79-175 (215)
320 PF01861 DUF43: Protein of unk 93.6 1.7 3.7E-05 43.9 13.7 132 156-295 45-183 (243)
321 TIGR01444 fkbM_fam methyltrans 93.6 0.099 2.2E-06 47.4 4.6 52 158-209 1-56 (143)
322 PF05971 Methyltransf_10: Prot 93.6 0.25 5.4E-06 51.5 8.0 94 131-227 81-185 (299)
323 PF03059 NAS: Nicotianamine sy 93.6 0.41 8.8E-06 49.4 9.5 101 155-257 120-230 (276)
324 PRK04457 spermidine synthase; 93.4 0.22 4.9E-06 50.8 7.4 139 398-546 65-217 (262)
325 COG4976 Predicted methyltransf 93.4 0.036 7.9E-07 55.3 1.4 101 394-501 120-224 (287)
326 PF13578 Methyltransf_24: Meth 93.3 0.017 3.8E-07 50.0 -0.8 93 160-256 1-104 (106)
327 PRK11805 N5-glutamine S-adenos 93.3 0.069 1.5E-06 55.9 3.5 112 401-517 135-277 (307)
328 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.3 0.051 1.1E-06 56.2 2.4 125 156-286 86-244 (283)
329 TIGR02469 CbiT precorrin-6Y C5 93.2 0.17 3.7E-06 44.2 5.3 90 401-501 21-121 (124)
330 KOG3010 Methyltransferase [Gen 93.1 0.06 1.3E-06 54.1 2.5 114 397-520 31-158 (261)
331 COG5459 Predicted rRNA methyla 93.1 0.5 1.1E-05 50.0 9.2 103 155-260 113-228 (484)
332 TIGR03704 PrmC_rel_meth putati 93.0 0.079 1.7E-06 53.8 3.3 120 401-522 88-236 (251)
333 PRK14121 tRNA (guanine-N(7)-)- 92.7 0.15 3.2E-06 55.1 5.0 114 401-520 124-255 (390)
334 PF06325 PrmA: Ribosomal prote 92.7 0.2 4.3E-06 52.2 5.7 128 401-546 163-295 (295)
335 TIGR02081 metW methionine bios 92.4 0.079 1.7E-06 51.2 2.3 87 402-494 16-104 (194)
336 COG3129 Predicted SAM-dependen 92.3 0.42 9.2E-06 47.9 7.2 96 130-227 55-161 (292)
337 PRK00312 pcm protein-L-isoaspa 91.8 0.15 3.2E-06 50.0 3.4 87 400-501 79-174 (212)
338 TIGR03533 L3_gln_methyl protei 91.8 0.21 4.6E-06 51.6 4.7 115 401-520 123-268 (284)
339 PRK14966 unknown domain/N5-glu 91.7 0.44 9.5E-06 52.0 7.1 155 375-546 236-419 (423)
340 PRK11524 putative methyltransf 91.7 0.44 9.5E-06 49.2 6.9 82 204-299 10-108 (284)
341 PF05175 MTS: Methyltransferas 91.4 0.1 2.3E-06 49.5 1.8 112 400-515 32-155 (170)
342 PF06962 rRNA_methylase: Putat 90.7 0.59 1.3E-05 43.4 6.0 108 178-288 2-123 (140)
343 PF13649 Methyltransf_25: Meth 90.6 0.018 3.9E-07 49.4 -3.9 92 403-496 1-101 (101)
344 PRK07580 Mg-protoporphyrin IX 90.4 0.3 6.6E-06 47.9 4.1 99 400-503 64-167 (230)
345 TIGR03587 Pse_Me-ase pseudamin 90.4 0.31 6.8E-06 47.8 4.1 94 400-501 44-141 (204)
346 PRK07402 precorrin-6B methylas 90.2 0.57 1.2E-05 45.3 5.8 109 401-519 42-160 (196)
347 COG2890 HemK Methylase of poly 90.2 0.91 2E-05 46.9 7.6 154 374-545 93-276 (280)
348 KOG1122 tRNA and rRNA cytosine 90.1 0.88 1.9E-05 49.2 7.4 105 154-260 240-374 (460)
349 TIGR02021 BchM-ChlM magnesium 90.0 0.29 6.4E-06 48.0 3.6 99 400-503 56-159 (219)
350 PF03848 TehB: Tellurite resis 89.9 0.11 2.4E-06 50.8 0.5 93 402-501 33-132 (192)
351 PRK14902 16S rRNA methyltransf 89.8 0.19 4.2E-06 55.1 2.3 99 401-501 252-378 (444)
352 TIGR00563 rsmB ribosomal RNA s 89.7 0.4 8.6E-06 52.4 4.7 108 401-511 240-384 (426)
353 PF10354 DUF2431: Domain of un 89.6 4.2 9E-05 38.8 11.0 118 162-289 3-151 (166)
354 PF03269 DUF268: Caenorhabditi 89.0 0.46 1E-05 45.1 3.9 70 218-288 62-143 (177)
355 TIGR03438 probable methyltrans 88.9 0.41 9E-06 49.8 3.9 98 401-501 65-176 (301)
356 KOG0822 Protein kinase inhibit 88.8 1.1 2.3E-05 49.9 7.0 127 156-283 368-504 (649)
357 TIGR01177 conserved hypothetic 88.5 0.46 1E-05 50.0 4.0 112 402-519 185-309 (329)
358 COG2230 Cfa Cyclopropane fatty 88.3 0.33 7.2E-06 50.2 2.7 96 395-501 70-175 (283)
359 COG1064 AdhP Zn-dependent alco 88.3 1.1 2.4E-05 47.5 6.7 91 156-259 167-261 (339)
360 PF04989 CmcI: Cephalosporin h 88.2 1.1 2.3E-05 44.3 6.1 99 156-257 33-147 (206)
361 TIGR00417 speE spermidine synt 87.9 0.31 6.7E-06 49.9 2.2 103 397-501 70-185 (270)
362 PF02390 Methyltransf_4: Putat 87.7 0.28 6.1E-06 47.9 1.6 112 402-517 20-149 (195)
363 PF06859 Bin3: Bicoid-interact 87.7 0.29 6.4E-06 43.5 1.6 38 219-257 1-44 (110)
364 PF07091 FmrO: Ribosomal RNA m 87.7 2.6 5.7E-05 42.8 8.5 130 156-289 106-243 (251)
365 KOG2198 tRNA cytosine-5-methyl 87.6 3.1 6.6E-05 44.5 9.3 120 135-259 138-298 (375)
366 PRK00811 spermidine synthase; 87.6 0.44 9.6E-06 49.2 3.1 104 395-501 72-190 (283)
367 COG4123 Predicted O-methyltran 87.3 2.4 5.3E-05 43.1 8.1 122 399-525 44-193 (248)
368 PLN02232 ubiquinone biosynthes 87.2 0.41 9E-06 45.0 2.4 49 452-504 35-83 (160)
369 COG2384 Predicted SAM-dependen 87.0 12 0.00027 37.4 12.6 119 158-290 19-143 (226)
370 KOG3045 Predicted RNA methylas 86.8 0.39 8.4E-06 48.9 2.1 102 402-522 183-287 (325)
371 KOG4589 Cell division protein 86.4 5.1 0.00011 39.2 9.2 31 155-185 69-104 (232)
372 KOG2793 Putative N2,N2-dimethy 86.3 3.5 7.6E-05 41.9 8.6 103 156-259 87-201 (248)
373 COG0500 SmtA SAM-dependent met 86.2 1.5 3.3E-05 37.1 5.3 94 403-504 52-157 (257)
374 PF05219 DREV: DREV methyltran 86.0 1 2.2E-05 45.9 4.6 91 399-501 94-187 (265)
375 PLN02781 Probable caffeoyl-CoA 86.0 0.72 1.6E-05 46.3 3.5 95 396-501 65-177 (234)
376 TIGR00478 tly hemolysin TlyA f 86.0 0.76 1.6E-05 46.2 3.7 105 401-522 77-213 (228)
377 KOG1540 Ubiquinone biosynthesi 85.9 1.4 3E-05 45.0 5.3 120 396-520 97-233 (296)
378 PF06080 DUF938: Protein of un 85.7 3.2 6.9E-05 41.0 7.7 129 402-545 28-204 (204)
379 PF13659 Methyltransf_26: Meth 85.5 0.28 6E-06 42.7 0.2 95 402-500 3-113 (117)
380 PF10294 Methyltransf_16: Puta 85.3 0.81 1.7E-05 43.7 3.4 98 397-501 43-155 (173)
381 TIGR00446 nop2p NOL1/NOP2/sun 84.1 1 2.2E-05 45.9 3.7 98 401-501 73-198 (264)
382 PF07021 MetW: Methionine bios 84.1 0.53 1.1E-05 46.0 1.5 91 401-501 15-108 (193)
383 KOG1099 SAM-dependent methyltr 84.1 0.91 2E-05 45.5 3.1 111 156-281 42-183 (294)
384 COG2813 RsmC 16S RNA G1207 met 83.0 7.9 0.00017 40.4 9.6 105 402-514 161-280 (300)
385 PRK01747 mnmC bifunctional tRN 80.9 4.4 9.5E-05 46.8 7.7 71 204-288 150-225 (662)
386 PRK01581 speE spermidine synth 79.3 4.1 8.8E-05 43.8 6.2 149 396-549 147-317 (374)
387 PLN02366 spermidine synthase 78.8 1.4 3E-05 46.3 2.5 103 397-501 89-205 (308)
388 COG4627 Uncharacterized protei 78.7 0.66 1.4E-05 43.8 0.1 47 451-501 39-85 (185)
389 cd00315 Cyt_C5_DNA_methylase C 78.5 15 0.00032 37.7 10.0 125 158-291 2-144 (275)
390 PF07757 AdoMet_MTase: Predict 77.7 2.2 4.8E-05 37.9 3.0 27 155-181 58-84 (112)
391 PF01555 N6_N4_Mtase: DNA meth 77.5 3.3 7.1E-05 40.0 4.6 56 232-298 31-87 (231)
392 cd08283 FDH_like_1 Glutathione 77.2 8.4 0.00018 41.1 8.0 97 156-258 185-307 (386)
393 PRK14903 16S rRNA methyltransf 77.0 2.2 4.8E-05 46.8 3.6 98 401-501 239-365 (431)
394 COG4301 Uncharacterized conser 76.8 13 0.00028 37.9 8.5 100 156-257 79-193 (321)
395 TIGR03840 TMPT_Se_Te thiopurin 76.7 1.9 4.1E-05 42.7 2.7 30 401-430 36-67 (213)
396 KOG4058 Uncharacterized conser 76.3 15 0.00034 34.6 8.2 64 154-217 71-138 (199)
397 COG0286 HsdM Type I restrictio 76.1 15 0.00034 41.0 9.9 118 135-260 174-329 (489)
398 PRK13255 thiopurine S-methyltr 75.2 2.5 5.3E-05 42.1 3.0 94 402-500 40-153 (218)
399 PRK13943 protein-L-isoaspartat 75.1 1.8 4E-05 45.7 2.2 88 401-502 82-180 (322)
400 PF08003 Methyltransf_9: Prote 74.4 5.4 0.00012 41.8 5.3 103 393-501 109-218 (315)
401 KOG1596 Fibrillarin and relate 74.1 15 0.00032 37.4 8.1 98 156-259 157-263 (317)
402 PF03514 GRAS: GRAS domain fam 74.0 27 0.00059 37.6 10.8 104 155-260 110-246 (374)
403 KOG1562 Spermidine synthase [A 73.9 7.7 0.00017 40.5 6.2 104 154-259 120-238 (337)
404 PRK10901 16S rRNA methyltransf 73.9 4.3 9.3E-05 44.4 4.8 99 401-501 246-371 (427)
405 KOG2920 Predicted methyltransf 73.5 1.7 3.8E-05 44.7 1.5 42 219-261 196-238 (282)
406 KOG2730 Methylase [General fun 73.3 2.6 5.7E-05 42.1 2.6 69 157-226 96-172 (263)
407 PRK10742 putative methyltransf 72.6 14 0.00029 37.8 7.6 70 158-227 91-172 (250)
408 PF14740 DUF4471: Domain of un 72.6 7.2 0.00016 40.6 5.8 63 218-286 221-285 (289)
409 PRK14901 16S rRNA methyltransf 72.5 4.1 8.9E-05 44.6 4.2 116 401-520 254-407 (434)
410 PF11899 DUF3419: Protein of u 72.3 12 0.00027 40.4 7.7 75 182-257 256-334 (380)
411 cd08254 hydroxyacyl_CoA_DH 6-h 70.8 14 0.00031 37.7 7.6 89 156-258 166-264 (338)
412 PRK03612 spermidine synthase; 70.2 4.2 9.1E-05 45.8 3.7 121 398-520 296-438 (521)
413 PRK14904 16S rRNA methyltransf 70.1 3.1 6.8E-05 45.7 2.6 98 401-502 252-377 (445)
414 KOG1501 Arginine N-methyltrans 69.8 10 0.00022 41.6 6.1 65 134-201 47-114 (636)
415 PRK09880 L-idonate 5-dehydroge 69.1 14 0.00031 38.6 7.2 91 156-258 170-267 (343)
416 COG2227 UbiG 2-polyprenyl-3-me 68.1 5.7 0.00012 40.2 3.7 94 402-502 62-161 (243)
417 KOG2361 Predicted methyltransf 67.9 2.7 5.8E-05 42.6 1.4 43 459-503 142-184 (264)
418 PLN03075 nicotianamine synthas 64.6 7.5 0.00016 40.6 4.0 140 399-547 123-276 (296)
419 PF02527 GidB: rRNA small subu 64.1 17 0.00036 35.3 6.0 131 377-521 28-170 (184)
420 COG2264 PrmA Ribosomal protein 63.6 18 0.00038 38.0 6.4 114 399-521 162-283 (300)
421 PHA01634 hypothetical protein 63.4 28 0.00061 32.1 6.8 34 155-188 28-64 (156)
422 COG3510 CmcI Cephalosporin hyd 62.4 10 0.00023 37.2 4.2 99 155-258 69-181 (237)
423 TIGR00006 S-adenosyl-methyltra 62.2 21 0.00045 37.5 6.7 37 156-192 21-61 (305)
424 PRK09424 pntA NAD(P) transhydr 62.1 26 0.00056 39.5 7.8 99 155-258 164-286 (509)
425 PLN02476 O-methyltransferase 60.5 13 0.00029 38.4 4.9 99 395-501 114-227 (278)
426 COG1867 TRM1 N2,N2-dimethylgua 60.3 19 0.00042 38.6 6.1 98 156-258 53-155 (380)
427 cd08245 CAD Cinnamyl alcohol d 60.2 30 0.00065 35.5 7.6 93 156-257 163-256 (330)
428 PF05185 PRMT5: PRMT5 arginine 60.0 11 0.00024 41.7 4.4 146 368-520 151-324 (448)
429 cd05188 MDR Medium chain reduc 59.9 25 0.00054 34.3 6.6 89 156-259 135-234 (271)
430 PHA03412 putative methyltransf 59.3 7.3 0.00016 39.5 2.7 94 402-499 52-160 (241)
431 KOG2539 Mitochondrial/chloropl 58.3 28 0.00061 38.5 7.0 104 155-260 200-318 (491)
432 COG4106 Tam Trans-aconitate me 58.0 15 0.00033 36.9 4.5 118 393-521 24-152 (257)
433 PRK15128 23S rRNA m(5)C1962 me 56.9 6.4 0.00014 42.8 1.9 120 401-522 222-365 (396)
434 COG1568 Predicted methyltransf 56.6 54 0.0012 34.2 8.3 125 156-290 153-288 (354)
435 COG2521 Predicted archaeal met 56.6 7 0.00015 39.6 2.0 150 361-521 102-272 (287)
436 KOG1227 Putative methyltransfe 56.6 4.9 0.00011 41.9 1.0 133 106-255 153-294 (351)
437 PF07942 N2227: N2227-like pro 56.5 7.6 0.00016 40.0 2.3 69 449-522 151-238 (270)
438 PF07927 YcfA: YcfA-like prote 55.7 23 0.00049 26.9 4.4 31 271-301 1-31 (56)
439 PF00145 DNA_methylase: C-5 cy 55.6 33 0.00071 35.1 6.9 134 158-301 2-153 (335)
440 TIGR00027 mthyl_TIGR00027 meth 55.3 2.4E+02 0.0053 28.7 15.4 102 156-257 82-197 (260)
441 PF05430 Methyltransf_30: S-ad 54.0 24 0.00052 32.1 4.9 59 218-290 49-111 (124)
442 smart00650 rADc Ribosomal RNA 54.0 14 0.00029 34.8 3.4 95 400-503 14-114 (169)
443 KOG4300 Predicted methyltransf 53.9 7.3 0.00016 38.8 1.6 39 461-504 145-184 (252)
444 PF02005 TRM: N2,N2-dimethylgu 53.8 12 0.00026 40.4 3.4 97 157-259 51-156 (377)
445 COG0220 Predicted S-adenosylme 52.6 17 0.00037 36.5 4.0 117 401-521 50-188 (227)
446 KOG0024 Sorbitol dehydrogenase 52.3 46 0.00099 35.4 7.1 97 155-259 169-275 (354)
447 TIGR02822 adh_fam_2 zinc-bindi 51.6 52 0.0011 34.2 7.7 86 156-258 166-255 (329)
448 TIGR00561 pntA NAD(P) transhyd 50.9 24 0.00053 39.7 5.3 93 155-255 163-282 (511)
449 COG4122 Predicted O-methyltran 50.7 15 0.00032 36.7 3.3 144 386-546 49-218 (219)
450 cd08232 idonate-5-DH L-idonate 50.4 50 0.0011 34.0 7.3 89 156-257 166-262 (339)
451 cd08234 threonine_DH_like L-th 50.4 64 0.0014 33.0 8.1 90 156-258 160-258 (334)
452 KOG2671 Putative RNA methylase 50.3 30 0.00065 37.0 5.5 71 155-225 208-290 (421)
453 TIGR00675 dcm DNA-methyltransf 50.3 44 0.00096 35.0 6.9 133 159-300 1-150 (315)
454 PTZ00357 methyltransferase; Pr 50.0 42 0.00091 39.1 6.9 104 157-261 702-843 (1072)
455 PF00107 ADH_zinc_N: Zinc-bind 50.0 10 0.00023 33.3 1.9 82 165-259 1-91 (130)
456 COG2242 CobL Precorrin-6B meth 49.8 57 0.0012 31.9 7.0 136 367-521 3-156 (187)
457 PF05891 Methyltransf_PK: AdoM 49.3 10 0.00023 37.8 1.9 107 398-506 54-165 (218)
458 PRK13168 rumA 23S rRNA m(5)U19 48.9 54 0.0012 36.0 7.6 110 401-521 299-419 (443)
459 PRK11933 yebU rRNA (cytosine-C 48.9 21 0.00045 39.8 4.4 106 402-510 116-257 (470)
460 cd08230 glucose_DH Glucose deh 48.5 50 0.0011 34.6 7.1 91 156-257 173-269 (355)
461 PHA03411 putative methyltransf 48.0 16 0.00035 37.8 3.1 97 401-501 66-182 (279)
462 PLN02585 magnesium protoporphy 47.1 27 0.00057 36.9 4.6 93 401-499 146-247 (315)
463 TIGR02825 B4_12hDH leukotriene 46.9 70 0.0015 32.9 7.7 92 156-257 139-237 (325)
464 TIGR00479 rumA 23S rRNA (uraci 45.2 17 0.00037 39.7 3.0 110 401-521 294-415 (431)
465 PF01596 Methyltransf_3: O-met 45.2 8.4 0.00018 38.0 0.5 136 394-546 40-205 (205)
466 PF05711 TylF: Macrocin-O-meth 44.8 92 0.002 31.8 7.9 86 202-297 158-247 (248)
467 PF11312 DUF3115: Protein of u 44.7 46 0.001 35.1 5.8 63 202-264 176-250 (315)
468 KOG2651 rRNA adenine N-6-methy 42.2 29 0.00063 37.5 3.9 32 154-185 152-186 (476)
469 PLN03154 putative allyl alcoho 42.1 82 0.0018 33.1 7.5 92 156-257 159-258 (348)
470 KOG1975 mRNA cap methyltransfe 41.9 16 0.00034 38.8 1.9 57 459-521 195-257 (389)
471 COG0421 SpeE Spermidine syntha 41.9 25 0.00054 36.5 3.4 98 393-501 70-189 (282)
472 PRK10458 DNA cytosine methylas 41.4 3.1E+02 0.0068 30.6 12.0 52 132-185 66-120 (467)
473 PF14881 Tubulin_3: Tubulin do 41.0 60 0.0013 31.4 5.7 63 366-431 43-117 (180)
474 PF04445 SAM_MT: Putative SAM- 40.8 42 0.0009 34.0 4.7 71 157-227 77-159 (234)
475 cd08255 2-desacetyl-2-hydroxye 40.7 93 0.002 30.9 7.4 88 156-257 98-190 (277)
476 cd08239 THR_DH_like L-threonin 40.5 72 0.0016 32.9 6.7 91 156-258 164-263 (339)
477 TIGR00853 pts-lac PTS system, 40.3 62 0.0013 27.8 5.1 73 157-252 4-76 (95)
478 TIGR03451 mycoS_dep_FDH mycoth 39.4 87 0.0019 32.8 7.2 90 156-258 177-277 (358)
479 cd08281 liver_ADH_like1 Zinc-d 39.2 68 0.0015 33.9 6.4 88 157-257 193-290 (371)
480 PF01739 CheR: CheR methyltran 38.9 11 0.00024 36.9 0.2 54 448-504 124-177 (196)
481 KOG1253 tRNA methyltransferase 38.5 31 0.00068 38.4 3.6 99 155-259 109-218 (525)
482 PRK10611 chemotaxis methyltran 37.7 15 0.00032 38.3 1.0 45 459-505 221-265 (287)
483 TIGR03366 HpnZ_proposed putati 36.7 88 0.0019 31.6 6.5 89 156-257 121-218 (280)
484 COG1565 Uncharacterized conser 36.7 35 0.00076 36.7 3.5 20 156-175 78-97 (370)
485 TIGR03201 dearomat_had 6-hydro 35.8 97 0.0021 32.3 6.8 90 156-257 167-272 (349)
486 PF13051 DUF3912: Protein of u 35.3 10 0.00023 29.6 -0.4 10 445-454 57-66 (68)
487 cd05285 sorbitol_DH Sorbitol d 34.0 1.3E+02 0.0029 31.1 7.4 34 217-257 232-265 (343)
488 KOG3115 Methyltransferase-like 33.6 32 0.00068 34.3 2.4 35 379-419 46-80 (249)
489 KOG1709 Guanidinoacetate methy 33.5 13 0.00028 37.3 -0.3 54 424-500 148-204 (271)
490 TIGR01202 bchC 2-desacetyl-2-h 33.5 1E+02 0.0023 31.6 6.5 81 157-257 146-231 (308)
491 PF02475 Met_10: Met-10+ like- 33.2 31 0.00068 33.9 2.4 88 401-498 103-198 (200)
492 cd08237 ribitol-5-phosphate_DH 33.1 1E+02 0.0023 32.1 6.5 87 156-257 164-256 (341)
493 cd08294 leukotriene_B4_DH_like 33.0 1.3E+02 0.0028 30.5 7.2 91 156-257 144-241 (329)
494 KOG2530 Members of tubulin/Fts 33.0 50 0.0011 36.3 4.0 103 366-472 174-299 (483)
495 PF14740 DUF4471: Domain of un 32.4 39 0.00085 35.2 3.1 56 456-521 217-284 (289)
496 PRK10309 galactitol-1-phosphat 32.2 1.3E+02 0.0029 31.1 7.1 20 238-257 241-260 (347)
497 cd08261 Zn_ADH7 Alcohol dehydr 32.1 1.4E+02 0.0031 30.6 7.3 89 156-257 160-258 (337)
498 COG0604 Qor NADPH:quinone redu 31.9 74 0.0016 33.5 5.1 90 156-258 143-242 (326)
499 PRK11524 putative methyltransf 31.7 1.3E+02 0.0029 30.8 6.9 38 155-192 208-247 (284)
500 KOG2904 Predicted methyltransf 31.6 1.3E+02 0.0029 31.4 6.5 157 376-545 129-327 (328)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.2e-156 Score=1233.82 Aligned_cols=502 Identities=54% Similarity=1.018 Sum_probs=474.2
Q ss_pred CccCCCCCChhhhhhhhcCCCccccccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCchhhhhccCCCCccccccccch
Q 008748 31 SILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQH 110 (555)
Q Consensus 31 ~~~pc~~~~~~~~~~~~~~~~~~~~~~~er~C~~~~~~~~Cl~~~p~gY~~P~~Wp~srd~~W~~n~~~~~L~~~k~~~~ 110 (555)
|||||+|++.+ .+ ...++++++|||||||+.++++.||||+|+||+.|++||+|||++|++|+||++|+++|+.|+
T Consensus 1 dy~PC~D~~~~--~~--~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qn 76 (506)
T PF03141_consen 1 DYIPCLDNSRA--IK--FLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQN 76 (506)
T ss_pred CCcCCCCHHHH--Hh--hccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhccccc
Confidence 79999444443 22 224789999999999998899999999999999999999999999999999999999999999
Q ss_pred hhhhcCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcCCCccccCChhhhhH
Q 008748 111 WMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHE 190 (555)
Q Consensus 111 W~~~~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~ 190 (555)
||+.+|+.+.|||+|++|..|+++|++.|.++++.. ..++..+++||||||+|+|+++|++++|+++.+++.+.++
T Consensus 77 Wv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~ 152 (506)
T PF03141_consen 77 WVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHE 152 (506)
T ss_pred ceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCc
Confidence 999999999999999999999999999999999852 3457789999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHH
Q 008748 191 NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRR 269 (555)
Q Consensus 191 a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~ 269 (555)
+++|+|.+||.++.+.+...++|||++++||+|||+.|.+.|..+.+.+|.|++|+|||||+|+++.|+.+ ...++..+
T Consensus 153 ~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~ 232 (506)
T PF03141_consen 153 AQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEE 232 (506)
T ss_pred hhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHH
Confidence 99999999999999998889999999999999999999999999989999999999999999999999998 44556678
Q ss_pred HHHHHHHHHHhcCcEEEEEeeceEEeecCCCchhhhccCCCCCCCCCCCCCCCCccccccccccccccccccccccCCCC
Q 008748 270 IWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGL 349 (555)
Q Consensus 270 ~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl~~~c~~~r~~~~~p~lc~~~~~~~~~wy~~L~~Ci~~~~~~~~~~~~~~~ 349 (555)
+|++++++++++||+++.++++++|||||.+++||..|+..+.|++|++++++|++||++|++|||++|+..+..+|+++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~ 312 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWL 312 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCC
Confidence 99999999999999999999999999999999999999887899999988999999999999999999998777788999
Q ss_pred CCCCCCCCCCCCCccc---cCCChhhHhHhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEE
Q 008748 350 VPWPARLTAPPPRLEE---VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMN 426 (555)
Q Consensus 350 ~~~p~rl~~~~~~~~~---~~~~~~~~~~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmn 426 (555)
++||+||+++|+||.. .|+++|+|++|+++|+++|++||++++..|++++||||||||||||||||||+++||||||
T Consensus 313 ~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMN 392 (506)
T PF03141_consen 313 PKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMN 392 (506)
T ss_pred CCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEE
Confidence 9999999999999998 7999999999999999999999998887899999999999999999999999999999999
Q ss_pred ecccCCCCchhHHhhccccchhcccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchhH
Q 008748 427 VAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSI 506 (555)
Q Consensus 427 v~p~~~~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~ 506 (555)
|||+.++|||+|||||||||+||||||+|||||||||||||++||| .+++||+|++|||||||||||||++||||++++
T Consensus 393 VVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs-~~~~rC~~~~illEmDRILRP~G~~iiRD~~~v 471 (506)
T PF03141_consen 393 VVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS-LYKDRCEMEDILLEMDRILRPGGWVIIRDTVDV 471 (506)
T ss_pred ecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh-hhcccccHHHHHHHhHhhcCCCceEEEeccHHH
Confidence 9999999999999999999999999999999999999999999999 567789999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccceecccccccccCCCCCceEEEEEe
Q 008748 507 INYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 507 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
+++|++|+++|||+++ ++|+|+++ .++||||||||
T Consensus 472 l~~v~~i~~~lrW~~~--~~d~e~g~--~~~EkiL~~~K 506 (506)
T PF03141_consen 472 LEKVKKIAKSLRWEVR--IHDTEDGP--DGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHhCcceEE--EEecCCCC--CCCceEEEEEC
Confidence 9999999999999995 56778876 56999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.89 E-value=1.2e-23 Score=224.45 Aligned_cols=154 Identities=20% Similarity=0.351 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHhhhhcc----CCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhccc-c
Q 008748 379 IWQVRVVDYWKQMKTVA----QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDW-C 452 (555)
Q Consensus 379 ~w~~~v~~y~~~~~~~~----~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~-c 452 (555)
.++.-+++|...|...+ ..+.||.++|++||+|+|||.|+++.|-+|..+|.+.+ ++.++++|||+..++.-- -
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s 172 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS 172 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc
Confidence 34556667765554433 55889999999999999999999999999999999876 999999999986666554 5
Q ss_pred cCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe----------cchhHHHHHHHHHhhcCccce
Q 008748 453 ESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 453 e~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r----------d~~~~~~~~~~~~~~~~w~~~ 522 (555)
.+++.+.|+|||+|++++...+..+ -..+|+|+|||||||||+|+. |..+.++++++++++|||+.-
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~---~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~v 249 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPN---DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKV 249 (506)
T ss_pred ccccCCccchhhhhcccccccchhc---ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888999999999999977665 357999999999999999975 456889999999999999972
Q ss_pred ecccccccccCCCCCceEEEEEecc
Q 008748 523 LSEVEPRIDALSSSEERVLIAKKKL 547 (555)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~l~~~k~~ 547 (555)
..+..+.|.||+.
T Consensus 250 ------------a~~~~~aIwqKp~ 262 (506)
T PF03141_consen 250 ------------AEKGDTAIWQKPT 262 (506)
T ss_pred ------------eeeCCEEEEeccC
Confidence 1234599999974
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.71 E-value=5.7e-17 Score=177.61 Aligned_cols=307 Identities=15% Similarity=0.197 Sum_probs=168.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC--CCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK--RLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~--~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..|++. .|+++|+++.++..+.. ......++.+.++|+. .+++++++||+|+|.. +++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~-~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW-LLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhh-hHH
Confidence 358999999999999999864 68899988887754321 1122346788888874 5678888999999888 577
Q ss_pred cccch--HHHHHHHHhhcCCCcEEEEEcCCCCCC-------ChhhHHHHHHHHHHHHhcCcEEEEEeec--eEEeecCCC
Q 008748 232 WLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKKDQ--TVIWAKPIS 300 (555)
Q Consensus 232 ~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~-------~~e~~~~~~~l~~l~~~~gw~vv~~~~~--~~iw~KPl~ 300 (555)
|..+. ..++.++.|+|||||++++........ ++..........+++.+.+|........ ...+.+++.
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 194 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKCIG 194 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeechh
Confidence 77663 679999999999999999975332111 1111112335566788888766533221 122223332
Q ss_pred chhhhccCCCCCCCCCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCccccCCChhhHhHhHhhH
Q 008748 301 NSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIW 380 (555)
Q Consensus 301 ~~c~~~r~~~~~p~lc~~~~~~~~~wy~~L~~Ci~~~~~~~~~~~~~~~~~~p~rl~~~~~~~~~~~~~~~~~~~d~~~w 380 (555)
+.-. ... +.--++......+..-...+..++. |+.-.++.|.. .+.|....-.+
T Consensus 195 ~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~y~~~~i~~----~~~f~g~~~~v 248 (475)
T PLN02336 195 AYVK--NKK-NQNQICWLWQKVSSTNDKGFQRFLD-------------------NVQYKSSGILR----YERVFGEGFVS 248 (475)
T ss_pred hhhh--ccC-CcceEEEEEEeecCCcchhHHHHhh-------------------hhccccccHHH----HHHHhCCCCCC
Confidence 2111 100 0000111100000001122222221 12111221211 01111000000
Q ss_pred HHHH---HHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc--cc---cc-hhcc
Q 008748 381 QVRV---VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR--GL---IG-TVHD 450 (555)
Q Consensus 381 ~~~v---~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r--gl---~g-~~~~ 450 (555)
...| ......+. + ..-..|+|++||.|+++..|.+..- .+|+=++-+ ..|.+.-++ |+ +- ...|
T Consensus 249 ~~~v~~te~l~~~~~--~--~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d 322 (475)
T PLN02336 249 TGGLETTKEFVDKLD--L--KPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRKCSVEFEVAD 322 (475)
T ss_pred CchHHHHHHHHHhcC--C--CCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcC
Confidence 0111 11112221 2 2345799999999999887765421 245555543 444433222 21 11 1234
Q ss_pred cccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 451 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 451 ~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+.+. +.-+.+||+|.+.+.+-.+. +...+|-|+-|+|+|||.+++.|
T Consensus 323 ~~~~-~~~~~~fD~I~s~~~l~h~~----d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 323 CTKK-TYPDNSFDVIYSRDTILHIQ----DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cccC-CCCCCCEEEEEECCcccccC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 4332 21235899999988876443 35789999999999999999875
No 4
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.69 E-value=1.2e-16 Score=163.11 Aligned_cols=157 Identities=24% Similarity=0.414 Sum_probs=112.7
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCC--CCCCchhhhhccCCCCccccccccchhhhhcCceeeeCCCCCCCCccHHHHHH
Q 008748 60 RHCPPPERRYNCLVPPPKGYKIPVR--WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYIL 137 (555)
Q Consensus 60 r~C~~~~~~~~Cl~~~p~gY~~P~~--Wp~srd~~W~~n~~~~~L~~~k~~~~W~~~~~e~~~F~~~g~~f~~~a~~y~~ 137 (555)
=+|++ +|+|| .+++||..-++ -+++++ +++..-|..+ +..|.+.| +|....+...+
T Consensus 19 ~~C~~-~h~fd---~a~~Gy~~ll~~~~~~~~~---------------~~d~~~~~~a--r~~fl~~g-~y~~l~~~i~~ 76 (272)
T PRK11088 19 WICPQ-NHQFD---CAKEGYVNLLPVQHKRSKD---------------PGDNKEMMQA--RRAFLDAG-HYQPLRDAVAN 76 (272)
T ss_pred EEcCC-CCCCc---cccCceEEeccccccCCCC---------------CCcCHHHHHH--HHHHHHCC-ChHHHHHHHHH
Confidence 38998 89999 99999984432 233322 3455555555 45666554 67666655555
Q ss_pred HHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-------CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC
Q 008748 138 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 210 (555)
Q Consensus 138 ~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-------~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~ 210 (555)
.+.+.+. ....+|||+|||+|.++..|++. .++|+|+++ .+++.|.++..++.+.++|.
T Consensus 77 ~l~~~l~---------~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~-----~~l~~A~~~~~~~~~~~~d~ 142 (272)
T PRK11088 77 LLAERLD---------EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK-----VAIKYAAKRYPQVTFCVASS 142 (272)
T ss_pred HHHHhcC---------CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH-----HHHHHHHHhCCCCeEEEeec
Confidence 5554443 22357999999999999988753 245666555 44566666667889999999
Q ss_pred CCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 211 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 211 ~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
..+|+++++||+|++.++ ...+.++.|+|||||+|+++.|..
T Consensus 143 ~~lp~~~~sfD~I~~~~~--------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 143 HRLPFADQSLDAIIRIYA--------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ccCCCcCCceeEEEEecC--------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 999999999999997653 124789999999999999998875
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.68 E-value=8.3e-17 Score=160.84 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||+|||||.++..++++ .|+++|+++.|+..+..+.......++.+.++|++.+|+++++||+|+|++ .
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-g 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-G 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-h
Confidence 3469999999999999998763 688999999998777755554434589999999999999999999999999 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
++..+|....++|+.|+|||||.+++..
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 8888999999999999999999999754
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=5.3e-16 Score=154.67 Aligned_cols=102 Identities=21% Similarity=0.344 Sum_probs=86.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
++.+|||||||||-++..+++. .|+++|+++.|+..+..+........+.|+++|++.|||+|++||+|.+++ .+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-gl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-GL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-hh
Confidence 4579999999999999999864 688888888888666644332222338899999999999999999999999 69
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+++++.+.+|+|++|||||||.+++..
T Consensus 130 rnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 999999999999999999999988754
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.59 E-value=2.2e-14 Score=145.70 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=84.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHH---HcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~---~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..|++. .|+++|+++.|+..+..+... ....++.+.++|+..+|+++++||+|++++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 468999999999999888752 688999998888766533211 113468899999999999999999999888
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
++|+.+++..+++|+.|+|||||++++++.
T Consensus 154 -~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 154 -GLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred -ccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 588899999999999999999999998763
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=5.3e-14 Score=148.19 Aligned_cols=135 Identities=19% Similarity=0.356 Sum_probs=102.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||||||+|.++..|++. .|+++|+++.++..+.. .+.+.+ .++.+.++|+..+|+++++||+|++.. .
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~-~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME-S 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC-c
Confidence 4568999999999999998863 78899998888766653 333334 358899999999999999999999887 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCC--C-----ChhhHH---------------HHHHHHHHHHhcCcEEEE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--H-----DPENRR---------------IWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~--~-----~~e~~~---------------~~~~l~~l~~~~gw~vv~ 287 (555)
++|..+...+++++.|+|||||.|++++..... . ...... .-.++.+++++.||..+.
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~ 275 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK 275 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence 888889899999999999999999997642110 0 001000 123777888999998876
Q ss_pred Eeec
Q 008748 288 KKDQ 291 (555)
Q Consensus 288 ~~~~ 291 (555)
.++.
T Consensus 276 ~~d~ 279 (340)
T PLN02244 276 TEDW 279 (340)
T ss_pred eeeC
Confidence 5543
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=6.5e-15 Score=123.83 Aligned_cols=90 Identities=27% Similarity=0.514 Sum_probs=71.2
Q ss_pred EEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 160 LDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 160 LDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
||+|||+|.++..|++. .++++|+++ .+++.++++. ..+.+..+|...+|+++++||+|++.. +++|.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE-----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H-----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH-----HHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeecc
Confidence 89999999999999875 455665554 4455555553 335689999999999999999999888 688888
Q ss_pred chHHHHHHHHhhcCCCcEEEE
Q 008748 235 RDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvi 255 (555)
+...+++|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 999999999999999999986
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.54 E-value=6.8e-14 Score=142.31 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=109.8
Q ss_pred CCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCe
Q 008748 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS 203 (555)
Q Consensus 127 ~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v 203 (555)
.+.++.......+.+.+.. .+..+|||||||+|..+..|+.. .|+++|+++.++..+..+... ...+
T Consensus 32 ~~~~gg~~~~~~~l~~l~l--------~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i 101 (263)
T PTZ00098 32 YISSGGIEATTKILSDIEL--------NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKI 101 (263)
T ss_pred CCCCCchHHHHHHHHhCCC--------CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCce
Confidence 3444444444555555543 23468999999999999888753 677888777766554432211 3457
Q ss_pred EEEEeCCCCCCCCCCCccEEEeccccccccc--chHHHHHHHHhhcCCCcEEEEEcCCCCCC---ChhhHHH--------
Q 008748 204 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYAH---DPENRRI-------- 270 (555)
Q Consensus 204 ~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~--d~~~~L~el~RvLkPGG~lvis~P~~~~~---~~e~~~~-------- 270 (555)
.+..+|+...|+++++||+|++..+ ++|.. +...+++++.++|||||+|+++.+..... .......
T Consensus 102 ~~~~~D~~~~~~~~~~FD~V~s~~~-l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~ 180 (263)
T PTZ00098 102 EFEANDILKKDFPENTFDMIYSRDA-ILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTL 180 (263)
T ss_pred EEEECCcccCCCCCCCeEEEEEhhh-HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCC
Confidence 8888998888999999999998774 44443 67889999999999999999987532110 1111111
Q ss_pred --HHHHHHHHHhcCcEEEEEeeceEEeecC
Q 008748 271 --WNAMYDLLKSMCWKIVSKKDQTVIWAKP 298 (555)
Q Consensus 271 --~~~l~~l~~~~gw~vv~~~~~~~iw~KP 298 (555)
-.++.+++++.||+.+..++.+..|...
T Consensus 181 ~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~ 210 (263)
T PTZ00098 181 IPIQEYGDLIKSCNFQNVVAKDISDYWLEL 210 (263)
T ss_pred CCHHHHHHHHHHCCCCeeeEEeCcHHHHHH
Confidence 1377888999999988877766555433
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.53 E-value=1.5e-14 Score=133.82 Aligned_cols=122 Identities=29% Similarity=0.538 Sum_probs=91.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+..+|||||||+|.++..|++. +++++|+++.++.. ........+....+.++++||+|+|+. +++|
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~ 90 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICND-VLEH 90 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEES-SGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHH-HHhh
Confidence 3469999999999999999875 67778777766543 333344444445556778999999987 7999
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH---------------HHHHHHHHHHhcCcEEEE
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR---------------IWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~---------------~~~~l~~l~~~~gw~vv~ 287 (555)
++++..+|.++.++|||||+++++++........... .-+++..++++.||++++
T Consensus 91 ~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999864210000000 124889999999999886
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.52 E-value=3.3e-13 Score=133.66 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=84.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.+.....++.+..+|...+++++++||+|++.. .+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-GL 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec-cc
Confidence 368999999999999888752 688999988887666644433223467888899988888889999999887 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++.++...++.++.++|+|||++++..+.
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 88889999999999999999999987643
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.51 E-value=8.9e-14 Score=145.16 Aligned_cols=136 Identities=14% Similarity=0.147 Sum_probs=104.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
...+|||||||+|.++..|+.. .|+++|+++.++..++.. +...+ ..+.+.+++++.+++++++||+|+|.. ++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~-vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE-VI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhh-HH
Confidence 3468999999999999999864 688898888887666533 22222 367888999989988888999999988 79
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC---------------ChhhHH------HHHHHHHHHHhcCcEEEEEe
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------------DPENRR------IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~---------------~~e~~~------~~~~l~~l~~~~gw~vv~~~ 289 (555)
+|+.++..++.++.++|||||.++++++..... .+.... .-+++..++++.||+++...
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 999999999999999999999999987653100 000001 12488999999999999776
Q ss_pred ece
Q 008748 290 DQT 292 (555)
Q Consensus 290 ~~~ 292 (555)
+..
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 554
No 14
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=1.4e-13 Score=138.37 Aligned_cols=99 Identities=25% Similarity=0.459 Sum_probs=82.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..|+.. .++++|+++.++ +.++++.....+.++|++.+|+++++||+|+++. +++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPML-----AQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHH-----HHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhc
Confidence 468999999999999988764 577777766554 5555554455778899999999989999999877 69999
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.++..++.++.|+|+|||.++++++..
T Consensus 117 ~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999999999999999999988654
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=2.9e-13 Score=136.71 Aligned_cols=96 Identities=24% Similarity=0.411 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
...+|||||||+|.++..|++. .|+++|+++.++ +.|+++ .+.+.++|+..++ ++++||+|+|+. ++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-----~~a~~~--~~~~~~~d~~~~~-~~~~fD~v~~~~-~l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-----AAARER--GVDARTGDVRDWK-PKPDTDVVVSNA-AL 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHhc--CCcEEEcChhhCC-CCCCceEEEEeh-hh
Confidence 3468999999999999999864 577787776665 444444 4678888887775 557999999887 69
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
||++++..+++++.++|||||.+++..+.
T Consensus 100 ~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 100 QWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 99999999999999999999999998765
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=4e-13 Score=135.68 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=101.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCC-CCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP-YPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..|++. .|+++|+++.++..++.. +.+.+ .++.+.++++..++ +.+++||+|+|.. ++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~-~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~-vl 122 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQA-AEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA-VL 122 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh-HH
Confidence 468999999999999999875 688999988888766533 33333 35678888877764 5678999999887 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC---------Ch----------------hhHHHHHHHHHHHHhcCcEE
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------DP----------------ENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~---------~~----------------e~~~~~~~l~~l~~~~gw~v 285 (555)
+|+.++..++.++.++|||||++++...+.... .. ...-.-+++.+++++.||++
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~ 202 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQI 202 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeE
Confidence 999999999999999999999999865332100 00 00001247788899999999
Q ss_pred EEEeece
Q 008748 286 VSKKDQT 292 (555)
Q Consensus 286 v~~~~~~ 292 (555)
+......
T Consensus 203 ~~~~gi~ 209 (255)
T PRK11036 203 MGKTGVR 209 (255)
T ss_pred eeeeeEE
Confidence 8776644
No 17
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.45 E-value=8.2e-14 Score=137.50 Aligned_cols=103 Identities=20% Similarity=0.360 Sum_probs=89.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||-|.++..||+. .|+|+|++...+..++ ..|.+.+..+.+....++++....++||+|+|.. +++|+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHHcc
Confidence 468999999999999999974 7899999888887776 4556667777788888888877668999999999 79999
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++++.+++.+.+.+||||.+++++++.
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 999999999999999999999999873
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.44 E-value=1.5e-12 Score=142.93 Aligned_cols=135 Identities=24% Similarity=0.335 Sum_probs=99.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+..+|||||||+|.++..|++. .++|+|+++.++..+..+ +.....++.+.++|...+++++++||+|+|.. +++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~-~l~ 343 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD-TIL 343 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECC-ccc
Confidence 3468999999999998888763 688888888777655432 22234467899999988888888999999887 588
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCC--ChhhHH----------HHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPENRR----------IWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~--~~e~~~----------~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|..++..++.++.|+|||||.++++++..... ...... .-.++.+++++.||+++..++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 88999999999999999999999986532111 111111 1135677888888888755544
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=1.9e-12 Score=135.53 Aligned_cols=134 Identities=22% Similarity=0.205 Sum_probs=98.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHH-HHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQF-ALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~-A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+++|||||||+|.++..+++. .|+|+|.++.++....... ......++.+..++++.+|+ +++||+|+|.. +++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~-vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG-VLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECC-hhh
Confidence 368999999999999998864 4899999988775432211 11113468889899999998 68899999877 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCC-----CChhhH----------HHHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDPENR----------RIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~-----~~~e~~----------~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|..++..++++++++|+|||.+++.+..... ..+... ..-.++.+++++.||+.+...+.
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 8999999999999999999999986421100 000000 01247889999999998876654
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=1.3e-12 Score=127.20 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=93.1
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||+|.++..|+++ .|+++|+++.++..+....+.....++.+.+.|+..++++ ++||+|+|+. ++||..
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~~ 109 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTV-VLMFLE 109 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEec-chhhCC
Confidence 58999999999999999975 7899999998887766444332223477888888777775 6799999987 477764
Q ss_pred --chHHHHHHHHhhcCCCcEEEEEc-CCC--CC--CChhhHHHHHHHHHHHHhcCcEEEEEeeceEEeec
Q 008748 235 --RDGILLLELDRLLRPGGYFVYSS-PEA--YA--HDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 297 (555)
Q Consensus 235 --d~~~~L~el~RvLkPGG~lvis~-P~~--~~--~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~~iw~K 297 (555)
+...++.++.++|+|||++++.. ... .. ..+...-.-.++.+.++ ||+++........+++
T Consensus 110 ~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~ 177 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHR 177 (197)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcc
Confidence 34679999999999999965532 110 00 00000001124555555 8988876555444443
No 21
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.40 E-value=3e-12 Score=130.36 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=98.6
Q ss_pred CCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
...+|||||||+|..+..++. ..|+++|+++.++..+..+.+.....++.+..+|+..+++++++||+|++.. +
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~-v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC-V 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC-c
Confidence 346999999999987665553 2588999998888766644332222367888899999999888999999665 7
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhh----HH----------HHHHHHHHHHhcCcEEEEEee
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN----RR----------IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~----~~----------~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+++.++...+++++.|+|||||+|+++........+.. .. ...++.+++++.||..+....
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 88888888999999999999999999753321111111 01 124678889999998875433
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.40 E-value=1.6e-12 Score=136.55 Aligned_cols=136 Identities=15% Similarity=0.153 Sum_probs=101.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..+++. .++++|+++.++..+..+.. ..++.+..+|...+++++++||+|+++. +++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~L~ 189 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAG-SIE 189 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcC-hhh
Confidence 468999999999988887652 57788888777655543321 2356788899999999989999999877 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCC--CChhhHH------HHHHHHHHHHhcCcEEEEEeeceEEe
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRR------IWNAMYDLLKSMCWKIVSKKDQTVIW 295 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~--~~~e~~~------~~~~l~~l~~~~gw~vv~~~~~~~iw 295 (555)
+.+++..+++++.|+|||||.++++.+.... ....... ..+++.+++++.||+.+..++....|
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 8888899999999999999999987643210 0000011 13578899999999998876654443
No 23
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.39 E-value=3.3e-12 Score=125.81 Aligned_cols=99 Identities=26% Similarity=0.441 Sum_probs=80.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..+++. .++++|+++.++. .++++. .++.+..+|+..+++++++||+|+++. ++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLA-----QAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-AL 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHH-----HHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hh
Confidence 368999999999999998864 4577777665553 333332 357888899989998889999999887 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+|..++..++.++.++|+|||.++++++..
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 999999999999999999999999988654
No 24
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.39 E-value=1.8e-12 Score=128.36 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCcHHHHHHhc----------CCCccccCChhhhhHHHHHHHHHcCC----CeEEEEeCCCCCCCCCCCc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSF 220 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----------~~V~~vdis~~dls~a~i~~A~~rg~----~v~~~~~d~~~Lp~~d~sF 220 (555)
...++||++||||-++..+.+ .+|++.|+++.|+..+. +.|.+++. .+.++.+|++.|||++.+|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 447999999999998887774 26889999999998776 44444533 3678889999999999999
Q ss_pred cEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 221 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|..++++ .+....++.+.|+|++|||||||+|.+..
T Consensus 179 D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 179 DAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999998 58888999999999999999999998743
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.38 E-value=9.8e-12 Score=122.21 Aligned_cols=148 Identities=21% Similarity=0.306 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGV 207 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~ 207 (555)
..+.+.+.+.+.. .+..+|||+|||+|.++..+++. .++++|+++..+..+..+ .......+.+..
T Consensus 5 ~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~ 75 (241)
T PRK08317 5 RRYRARTFELLAV--------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVR 75 (241)
T ss_pred HHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEe
Confidence 3444555555543 23468999999999999888753 577888877666544432 112245678888
Q ss_pred eCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC-----CCh----hhHHHH-------
Q 008748 208 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDP----ENRRIW------- 271 (555)
Q Consensus 208 ~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~-----~~~----e~~~~~------- 271 (555)
.|...+++++++||+|++.. ++++..++..+++++.++|+|||++++..+.... ... +....|
T Consensus 76 ~d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T PRK08317 76 GDADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADP 154 (241)
T ss_pred cccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCC
Confidence 89888888889999999887 5888899999999999999999999998764211 001 011111
Q ss_pred ---HHHHHHHHhcCcEEEEEee
Q 008748 272 ---NAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 272 ---~~l~~l~~~~gw~vv~~~~ 290 (555)
..+.+++++.||..+..+.
T Consensus 155 ~~~~~~~~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 155 WLGRRLPGLFREAGLTDIEVEP 176 (241)
T ss_pred cHHHHHHHHHHHcCCCceeEEE
Confidence 2567778888887664433
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.38 E-value=1.3e-12 Score=121.51 Aligned_cols=101 Identities=23% Similarity=0.397 Sum_probs=83.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC--CCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp--~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..|++ ..++++|+++.++..+.. .+.+.+. ++.+.++|+.+++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 46899999999999999993 368899999888877764 3333444 6999999998887 66 7899999877
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++++..++..+++++.++|++||.++++.+.
T Consensus 82 -~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 -VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6889999999999999999999999998766
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.37 E-value=1.6e-12 Score=113.61 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=78.1
Q ss_pred CCEEEEECCCCcHHHHHHhc--C--CCccccCChhhhhHHHHHHHH-HcCCCeEEEEeCC-CCCCCCCCCccEEEecc-c
Q 008748 156 IRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGT-KRLPYPSRSFELAHCSR-C 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~--~V~~vdis~~dls~a~i~~A~-~rg~~v~~~~~d~-~~Lp~~d~sFDlVv~s~-~ 228 (555)
..+|||||||+|.++..+++ . +++++|+++.++..++.+... ....++.+...|+ ...... +.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCc
Confidence 35899999999999999987 2 799999999988777755533 2246789999998 444444 5699999887 3
Q ss_pred ccccc--cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWL--QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~--~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
..++. ++...+++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22122 445779999999999999999975
No 28
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.36 E-value=4.6e-12 Score=131.91 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=96.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHH-HHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQI-QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i-~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+++|||||||+|.++..++.. .|+|+|.++.++..+.. +........+.+...++..+|.. .+||+|+|+. +++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-vL~ 199 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-VLY 199 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-hhh
Confidence 468999999999998887753 48899998887654321 11111224567777888888865 4899999887 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCC-----ChhhH-----H-----HHHHHHHHHHhcCcEEEEEeece
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----DPENR-----R-----IWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~-----~~e~~-----~-----~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
|..++..+|++++|+|||||.|++.+...... .+... . .-.++...+++.||+.++..+..
T Consensus 200 H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 200 HRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEecc
Confidence 88999999999999999999999864321000 00100 0 12477888999999998766543
No 29
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=7.1e-12 Score=121.89 Aligned_cols=137 Identities=15% Similarity=0.258 Sum_probs=93.4
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||+|.++.+|+++ .|+++|+++.++..+.. .+...+.++.+.+.|....+++ ++||+|+|+. ++++..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~~ 108 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTV-VFMFLQ 108 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEec-ccccCC
Confidence 58999999999999999875 78999999888876653 3445566677777887666665 5799999887 466663
Q ss_pred --chHHHHHHHHhhcCCCcEEEEEcC-C--CCCC--ChhhHHHHHHHHHHHHhcCcEEEEEeeceEEeecC
Q 008748 235 --RDGILLLELDRLLRPGGYFVYSSP-E--AYAH--DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 298 (555)
Q Consensus 235 --d~~~~L~el~RvLkPGG~lvis~P-~--~~~~--~~e~~~~~~~l~~l~~~~gw~vv~~~~~~~iw~KP 298 (555)
+...+++++.|+|+|||++++..- . .+.. .....-.-.++.+++. +|+++........|++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 446799999999999999665421 1 0000 0011112235555554 58888776555445444
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.34 E-value=1e-11 Score=125.14 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=79.9
Q ss_pred CCEEEEECCCCcHHHHHHhc------CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~------~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|..+..++. ..++++|+++.++..++.+.+... ..++.+.++|+..++++ .+|+|+++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~- 133 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF- 133 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh-
Confidence 35899999999999887764 268999999998877775554322 23688889998888775 489999877
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++||.++. ..+++++.++|||||.|+++...
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 58887543 56999999999999999998744
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=4.6e-12 Score=127.80 Aligned_cols=99 Identities=24% Similarity=0.397 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
+..+|||||||+|.++..+++. .|+++|+++.++ +.|+++..++.+..+|+..+. ++++||+|+|+. .+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-----~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l 103 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-----AEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SL 103 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-Ch
Confidence 3468999999999999988863 577887776655 455555566788888887665 346899999888 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
||..+...+++++.++|||||.+++..|..
T Consensus 104 ~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 104 QWLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 999999999999999999999999987664
No 32
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.32 E-value=9.2e-12 Score=122.77 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=96.5
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+|||||||+|.++..+++. .++++|+++.++..+..+. .+.+ ..+.+...|....+++ ++||+|++.. .++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~-~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE-VIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHH-HHH
Confidence 6999999999999888753 5778888877766555333 2333 3468888887666765 5899999877 588
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCC--CCCh-h-h---HHHHHHHHHHHHhcCcEEEEEeeceE
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAY--AHDP-E-N---RRIWNAMYDLLKSMCWKIVSKKDQTV 293 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~--~~~~-e-~---~~~~~~l~~l~~~~gw~vv~~~~~~~ 293 (555)
+..+...+++++.++|||||+++++.+... .... . . ...-.++.+++++.||+++...+...
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~ 147 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASL 147 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcH
Confidence 888889999999999999999999875321 0000 0 0 00124677788999999987776543
No 33
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.32 E-value=1.9e-11 Score=118.46 Aligned_cols=120 Identities=18% Similarity=0.082 Sum_probs=92.8
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+.+|||+|||+|.++..++. ..|+++|+++.++..++.+.+.....++.+..+|+..++. +++||+|+|..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----
Confidence 46899999999999888874 3799999999888777644433333358899999888776 67899999754
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..+...++.++.++|||||.+++..+.. .-.++.++++.+||.+.+...
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~~---------~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGRD---------PEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------hHHHHHHHHHhcCceEeeeEE
Confidence 2455779999999999999999986552 134678888999998776544
No 34
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.31 E-value=2.7e-11 Score=121.09 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=79.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+..... ..++.+.++|+..++++ .+|+|++++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~- 130 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF- 130 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec-
Confidence 358999999999999887752 58899998888766654432211 24678899999888875 489999887
Q ss_pred ccccccc--hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 229 RIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 229 ~l~~~~d--~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++||..+ ...+++++.|+|+|||.|+++.+..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 5788753 4679999999999999999987643
No 35
>PRK05785 hypothetical protein; Provisional
Probab=99.30 E-value=5.6e-12 Score=125.53 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||||||||.++..|++. .|+|+|+++.|+..+ +++. .+.++|++.+|+++++||+|++++ .+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a-----~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMN-----LVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH-----Hhcc---ceEEechhhCCCCCCCEEEEEecC-hhhc
Confidence 358999999999999998864 577887777766544 3332 356789999999999999999988 6889
Q ss_pred ccchHHHHHHHHhhcCCCc
Q 008748 233 LQRDGILLLELDRLLRPGG 251 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG 251 (555)
.++++.+++|+.|+|||.+
T Consensus 123 ~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cCCHHHHHHHHHHHhcCce
Confidence 9999999999999999953
No 36
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.30 E-value=1.1e-11 Score=121.40 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=92.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC-CCCC--CCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLP--YPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~-~~Lp--~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.......++.+.++|+ ..++ +++++||+|++.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 468999999999999988753 6899999998887666444333234688999998 7776 77789999998763
Q ss_pred ccccccc--------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 229 RIDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 229 ~l~~~~d--------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
.+|... ...+++++.++|||||.|+++++.. .....+.+.+++.||.+.
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------HHHHHHHHHHHhCccccc
Confidence 444321 3568999999999999999987652 345567778888888554
No 37
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.29 E-value=1.3e-12 Score=113.05 Aligned_cols=92 Identities=29% Similarity=0.576 Sum_probs=71.6
Q ss_pred EEEECCCCcHHHHHHhc-------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 159 VLDVGCGVASFGAYLLS-------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 159 VLDIGCGtG~~a~~La~-------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
|||+|||+|..+..+++ ..++++|+++.++..+..+. .+.+.++.+.++|+.++++.+++||+|+|+.++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~-~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF-SEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS-HHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc-hhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999999988874 36778888887776655333 33557899999999999988889999999776678
Q ss_pred cccch--HHHHHHHHhhcCCCc
Q 008748 232 WLQRD--GILLLELDRLLRPGG 251 (555)
Q Consensus 232 ~~~d~--~~~L~el~RvLkPGG 251 (555)
|..+. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 77543 669999999999998
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.29 E-value=3.7e-12 Score=130.30 Aligned_cols=141 Identities=16% Similarity=0.297 Sum_probs=91.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||||||.|.++.+++++ .|+|+++|......+. +.+.+.|. .+.+...|..+++. +||.|+|.. .
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~-~ 136 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE-M 136 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTSSSTEEEEES-GGG------S-SEEEEES-E
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe-c
Confidence 3469999999999999999975 6777777666554443 33344454 47888888877764 899999988 5
Q ss_pred cccc--cchHHHHHHHHhhcCCCcEEEEEc---CCC----CCC--Chhh-HHH--------HHHHHHHHHhcCcEEEEEe
Q 008748 230 IDWL--QRDGILLLELDRLLRPGGYFVYSS---PEA----YAH--DPEN-RRI--------WNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 230 l~~~--~d~~~~L~el~RvLkPGG~lvis~---P~~----~~~--~~e~-~~~--------~~~l~~l~~~~gw~vv~~~ 289 (555)
++|+ .+...+++++.++|||||.+++.. +.. ... .... ..+ ..++...+++.||++....
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~ 216 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVE 216 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEE
T ss_pred hhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEE
Confidence 7777 455789999999999999998743 111 000 0111 112 2366677889999999888
Q ss_pred eceEEeecCCC
Q 008748 290 DQTVIWAKPIS 300 (555)
Q Consensus 290 ~~~~iw~KPl~ 300 (555)
+....|.+.+.
T Consensus 217 ~~~~hY~~Tl~ 227 (273)
T PF02353_consen 217 NLGRHYARTLR 227 (273)
T ss_dssp E-HHHHHHHHH
T ss_pred EcCcCHHHHHH
Confidence 87766666553
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.26 E-value=2.4e-11 Score=125.02 Aligned_cols=131 Identities=18% Similarity=0.342 Sum_probs=91.1
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||+|.++.+|++. .|+++|+++.++..++ +.+.+.+.++.+...|+...++ +++||+|++.. ++++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~l~ 198 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMFLN 198 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhhCC
Confidence 48999999999999999864 7889999888876655 4455566778888888776655 57899999887 577764
Q ss_pred --chHHHHHHHHhhcCCCcEEEEEcCCC---CC-CCh-hhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 235 --RDGILLLELDRLLRPGGYFVYSSPEA---YA-HDP-ENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 235 --d~~~~L~el~RvLkPGG~lvis~P~~---~~-~~~-e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
+...+++++.++|+|||++++..+.. .. ..+ ...-.-.++.++++ +|+++......
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~e~~ 261 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYNENV 261 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEeccc
Confidence 44669999999999999977653211 00 000 00011235556554 48888765433
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.26 E-value=1.3e-12 Score=112.36 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=57.5
Q ss_pred EEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-C-CCCCccEEEecccccccc
Q 008748 160 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 160 LDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~-~d~sFDlVv~s~~~l~~~ 233 (555)
||||||+|.++..+++. +++++|+++.++..++.++.............+..... . ..++||+|+++. ++||.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999999888753 78999999999866654544433334444444333322 1 225899999887 79999
Q ss_pred cchHHHHHHHHhhcCCCcEE
Q 008748 234 QRDGILLLELDRLLRPGGYF 253 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~l 253 (555)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 41
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.22 E-value=2e-10 Score=112.21 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||+|||+|.++..++.. .++++|+++..+..+..+.. ...++.+..+|+..+++++++||+|+++. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~-~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAF-G 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEee-e
Confidence 3468999999999999888753 56777777665544432222 23457888899888888778999999877 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+++..++..+++++.++|+|||++++...
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88888889999999999999999998653
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.21 E-value=1.6e-10 Score=111.32 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=85.7
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
+.+|||+|||+|.++..++. ..|+++|+++.++..+... +++.+. ++.+..+|+..++. +++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~-~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREV-KAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHhCCCCeEEEecchhhccc-cCCccEEEehh--h
Confidence 36899999999998888763 3689999999887655533 333443 58889999887753 57899998653 3
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+ +...+++.+.++|+|||.+++..... .......+++.+...|++.+....
T Consensus 119 ~---~~~~~~~~~~~~LkpgG~lvi~~~~~------~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 A---SLNVLLELTLNLLKVGGYFLAYKGKK------YLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred h---CHHHHHHHHHHhcCCCCEEEEEcCCC------cHHHHHHHHHhhhhcCceEeeccc
Confidence 3 34568899999999999999865332 122333444445557887775543
No 43
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=5.7e-11 Score=114.47 Aligned_cols=102 Identities=21% Similarity=0.326 Sum_probs=84.9
Q ss_pred CEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeE-EEEeCCCCCC-CCCCCccEEEecccccc
Q 008748 157 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-YPSRSFELAHCSRCRID 231 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~-~~~~d~~~Lp-~~d~sFDlVv~s~~~l~ 231 (555)
..||+||||||..-.+... ..|+++|.++.|-+-+...++.++..++. |++++.+++| ++++++|.|+|.++ +-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-LC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-LC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-Ee
Confidence 3689999999977666552 37899999998877776666666666776 8999999999 89999999999984 66
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
-.+++.+.|.|+.|+|||||.+++....
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 6789999999999999999999997644
No 44
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.21 E-value=7.2e-11 Score=113.60 Aligned_cols=127 Identities=22% Similarity=0.294 Sum_probs=89.6
Q ss_pred CEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC-CCC-CCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RLP-YPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~-~Lp-~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||.|.+..+|.+.+ .++..+.+++++.+..+.++|.+ +.++|++ .|+ |++++||.|+.+. +++.+.
T Consensus 15 srVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~--Viq~Dld~gL~~f~d~sFD~VIlsq-tLQ~~~ 89 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVS--VIQGDLDEGLADFPDQSFDYVILSQ-TLQAVR 89 (193)
T ss_pred CEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCC--EEECCHHHhHhhCCCCCccEEehHh-HHHhHh
Confidence 589999999999999998731 22223334555556677777776 4566643 443 8999999999999 699999
Q ss_pred chHHHHHHHHhhcCCCcEEEEEcCCCC-----------------------CCChhh--HHHHHHHHHHHHhcCcEEEEEe
Q 008748 235 RDGILLLELDRLLRPGGYFVYSSPEAY-----------------------AHDPEN--RRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~P~~~-----------------------~~~~e~--~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
+++.+|.|+.|+ |...+++.|+.- +++.-. .-...+++++.++.|+++.+..
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~ 166 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERV 166 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEE
Confidence 999999999877 557788777630 011111 1234588888888888887655
Q ss_pred ec
Q 008748 290 DQ 291 (555)
Q Consensus 290 ~~ 291 (555)
..
T Consensus 167 ~~ 168 (193)
T PF07021_consen 167 FL 168 (193)
T ss_pred EE
Confidence 43
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=2e-10 Score=116.99 Aligned_cols=168 Identities=13% Similarity=0.277 Sum_probs=111.9
Q ss_pred eeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHH
Q 008748 119 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQF 195 (555)
Q Consensus 119 ~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~ 195 (555)
-.|++...........-.+.+.+.+.+. ++.+|||||||.|.++.++++. +|+|+++|..+...+. +.
T Consensus 44 ayf~~~~~tL~eAQ~~k~~~~~~kl~L~--------~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r 114 (283)
T COG2230 44 AYFEDPDMTLEEAQRAKLDLILEKLGLK--------PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KR 114 (283)
T ss_pred EEeCCCCCChHHHHHHHHHHHHHhcCCC--------CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HH
Confidence 3455555445555555556666666543 3479999999999999999975 6788888887776665 33
Q ss_pred HHHcCCC--eEEEEeCCCCCCCCCCCccEEEecccccccccc--hHHHHHHHHhhcCCCcEEEEEc---CCCCC-C-Chh
Q 008748 196 ALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS---PEAYA-H-DPE 266 (555)
Q Consensus 196 A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~---P~~~~-~-~~e 266 (555)
++++|.. +++...|..++. +.||-|+|.. .++|+.. ...++..+.++|+|||.+++.+ +.... . ...
T Consensus 115 ~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~ 190 (283)
T COG2230 115 IAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDF 190 (283)
T ss_pred HHHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHH
Confidence 4445554 777777776665 4499999888 5888855 6889999999999999999754 22111 1 111
Q ss_pred hHH-HH--------HHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 267 NRR-IW--------NAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 267 ~~~-~~--------~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
..+ +| ..+...+++.||.+...+.....+-+.+
T Consensus 191 i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl 232 (283)
T COG2230 191 IDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTL 232 (283)
T ss_pred HHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHH
Confidence 111 11 3566667888888886665544333333
No 46
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.19 E-value=9e-11 Score=114.01 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=88.1
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC---CCCCCccEEEecccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRCR 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp---~~d~sFDlVv~s~~~ 229 (555)
.+|||||||+|.++..++.. .++++|++..++..+..+.......++.+..+|+..++ +++++||.|++.+ .
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~-p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF-P 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC-C
Confidence 58999999999999988864 78899999888766664443332346888989986553 5567899999776 3
Q ss_pred cccccch--------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-cEEEE
Q 008748 230 IDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 287 (555)
Q Consensus 230 l~~~~d~--------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-w~vv~ 287 (555)
.+|.... ..++.++.|+|||||.|++.+... ....++.+.+...+ |+.+.
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--------~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--------PLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--------HHHHHHHHHHHhCCCeEecc
Confidence 5554321 468999999999999999976442 23445555555554 76654
No 47
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.18 E-value=3.3e-10 Score=111.78 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=80.2
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++. ..++++|+++..+..+..+..... ..++.+..+|+..++++.++||+|+++. .
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~-~ 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF-G 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec-c
Confidence 36899999999999888864 357888888777665554332211 2357888889888888778999999887 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+++..++..++.++.++|+|||.+++..
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 8888889999999999999999998865
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.17 E-value=2.6e-10 Score=112.46 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=91.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..++.. .++|+|+++.++..++.+.. ..+ .++.+.+.|+..++ ++||+|++... ++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~-l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV-LI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC---CCcCEEEEhhH-HH
Confidence 468999999999999999864 68889988888766664433 223 26788888887776 78999998874 54
Q ss_pred ccc--chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhh---------------HHHHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WLQ--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN---------------RRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~~--d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~---------------~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|.+ +...++.++.+++++++++.++....+...... ...-++++++++.+||+++..+..
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 443 346689999999998777665432210000000 001247889999999999876543
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.17 E-value=7.2e-10 Score=106.75 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=87.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..++.+ .++++|+++.++..++.+.......++.+..++.. .+++ ++||+|++... .+
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~~ 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-GG 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-cc
Confidence 458999999999999888753 68899999888776664443332235677777753 3343 57999998653 32
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
....++.++.++|+|||++++..... ....++.+++++.||+.+....
T Consensus 109 ---~~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 109 ---NLTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCcceEEE
Confidence 23568999999999999999864321 3356778899999997665443
No 50
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.16 E-value=2.3e-10 Score=112.67 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=69.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------~~d~sFDl 222 (555)
..+|||||||+|.++..+++. .|+++|+++. ....++.+.++|+...+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 458999999999999988763 5888888761 11245788899987753 56788999
Q ss_pred EEecccccccccch-----------HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 223 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 223 Vv~s~~~l~~~~d~-----------~~~L~el~RvLkPGG~lvis~P~ 259 (555)
|+|.. +.++..++ ..+|.++.++|+|||.|++....
T Consensus 121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 99865 45554322 45899999999999999996643
No 51
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.15 E-value=8.7e-11 Score=113.98 Aligned_cols=119 Identities=21% Similarity=0.314 Sum_probs=93.0
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
...++|.|+|||+|..+..|+++ .|+|+|-|+.| +..|+++.+++.|..+|+.... ++..+|+++++. +
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~M-----la~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-v 101 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM-----LAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-V 101 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHH-----HHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-h
Confidence 44578999999999999999985 56666655555 4666788899999999998875 346799999655 8
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
++|.++-..+|..+...|.|||.+.+..|+.+.. ....-|.+.+++.-|.
T Consensus 102 lqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-----psH~~mr~~A~~~p~~ 151 (257)
T COG4106 102 LQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-----PSHRLMRETADEAPFA 151 (257)
T ss_pred hhhccccHHHHHHHHHhhCCCceEEEECCCccCc-----hhHHHHHHHHhcCchh
Confidence 9999999999999999999999999999986422 1234555666555553
No 52
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.15 E-value=6.4e-10 Score=123.12 Aligned_cols=290 Identities=13% Similarity=0.149 Sum_probs=157.9
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++. ..++++|+++.++..+..+. ...+. .+.+..+|... +++.++||+|+|+-..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~-~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA-IKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH-HHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 35899999999999988874 36899999998887776544 33333 46777777532 2345689999984211
Q ss_pred c-------------cccc------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 230 I-------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 230 l-------------~~~~------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
+ .|.+ ....++.++.++|+|||.+++.... ..-+.+.+++.+.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---------~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---------KQEEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---------chHHHHHHHHHhcCCC
Confidence 1 1110 1133677889999999999986432 1234677888888986
Q ss_pred EEEEeeceEEeecCCCchhhhccCCCCCCCCCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCcc
Q 008748 285 IVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLE 364 (555)
Q Consensus 285 vv~~~~~~~iw~KPl~~~c~~~r~~~~~p~lc~~~~~~~~~wy~~L~~Ci~~~~~~~~~~~~~~~~~~p~rl~~~~~~~~ 364 (555)
.+....+.. + .+.+.. -.+.++...-.. .+|-.+.+=.+++ .-..+.
T Consensus 288 ~~~~~~D~~----------------g-~~R~v~-----------~~~~~~~rs~~r---r~g~~~~~~q~~~--~e~~~p 334 (506)
T PRK01544 288 IESVYKDLQ----------------G-HSRVIL-----------ISPINLNRSYAR---RIGKSLSGVQQNL--LDNELP 334 (506)
T ss_pred ceEEEecCC----------------C-CceEEE-----------eccccCCcceec---cCCCCCCHHHHHH--HHhhhh
Confidence 554332210 0 011110 001111111100 0110000000000 000011
Q ss_pred ccCCChhhHhHhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-----CchhHH
Q 008748 365 EVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-----ARLKII 439 (555)
Q Consensus 365 ~~~~~~~~~~~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-----~~l~~i 439 (555)
..+++.+ + +....-..++|++||.|+|.+++....-- .|++=++-. ..+.-+
T Consensus 335 ~~~i~~e-----------------k-----lf~~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~ 391 (506)
T PRK01544 335 KYLFSKE-----------------K-----LVNEKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLA 391 (506)
T ss_pred hhCCCHH-----------------H-----hCCCCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHH
Confidence 1122210 1 11234588999999999999999643111 245544432 344556
Q ss_pred hhccccchhcccccCC----CCCC-Cccchhhccccccccc------cCCCChhhhhhhhcccccCCceEEEe-cchhHH
Q 008748 440 YDRGLIGTVHDWCESF----STYP-RTYDLLHAWKVFSEIE------ERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSII 507 (555)
Q Consensus 440 ~~rgl~g~~~~~ce~~----~typ-rtydl~h~~~~~s~~~------~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~ 507 (555)
.++||-.+. =.|..+ .-+| .+.|-||- .|.+-+ ++|=--...|-++-|+|+|||.+.++ |..+..
T Consensus 392 ~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i--~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~ 468 (506)
T PRK01544 392 GEQNITNFL-LFPNNLDLILNDLPNNSLDGIYI--LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYF 468 (506)
T ss_pred HHcCCCeEE-EEcCCHHHHHHhcCcccccEEEE--ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 677763221 122211 2223 46666652 244222 34445568899999999999999886 666666
Q ss_pred HHHHHHHh
Q 008748 508 NYIRKFIT 515 (555)
Q Consensus 508 ~~~~~~~~ 515 (555)
+.+.+.+.
T Consensus 469 ~~~~~~~~ 476 (506)
T PRK01544 469 YEAIELIQ 476 (506)
T ss_pred HHHHHHHH
Confidence 66555544
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.14 E-value=4.4e-10 Score=107.45 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=89.0
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+..+.+..+|....+ .++||+|+++.. .+...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCC-CCCCc
Confidence 57999999999999998875 58899999888776664443 34456777888865543 358999998753 32222
Q ss_pred c---------------------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 235 R---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 235 d---------------------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+ ...++.++.++|+|||.+++..+... .-.++..++++.||.......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHHHHHHhCCCeEEEEEE
Confidence 1 24579999999999999999775431 124667888999998775544
No 54
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.14 E-value=1.4e-10 Score=112.55 Aligned_cols=99 Identities=24% Similarity=0.482 Sum_probs=78.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
+.++||+|||.|..+.+|+++ .|+++|+++..+.... +.|.+.+.++...+.|+....++ +.||+|++.. +++|.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~fL 107 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFMFL 107 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGGGS
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-EeccC
Confidence 358999999999999999986 7899999998876654 67788889999999998888776 6799999765 57776
Q ss_pred cch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 234 QRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 234 ~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
... ..++..+...++|||++++.+
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 558999999999999988843
No 55
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.14 E-value=3.6e-10 Score=111.21 Aligned_cols=134 Identities=16% Similarity=0.308 Sum_probs=97.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCC-CCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP-SRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+... .+. ++.+...+...++.. .++||+|++.. .++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK-DPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-VLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeCCHHHhhcCCCCCccEEEehh-HHH
Confidence 468999999999999888753 577888888776655543332 334 577888887766644 37899999887 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCC---------------hh---hHH---HHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---------------PE---NRR---IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~---------------~e---~~~---~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+..++..++.++.++|+|||.++++.+...... +. ... .-.++.+++++.||++++...
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 899999999999999999999998775321000 00 000 113688899999999987664
Q ss_pred c
Q 008748 291 Q 291 (555)
Q Consensus 291 ~ 291 (555)
.
T Consensus 204 ~ 204 (224)
T TIGR01983 204 L 204 (224)
T ss_pred E
Confidence 3
No 56
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.14 E-value=5.3e-11 Score=116.24 Aligned_cols=132 Identities=26% Similarity=0.365 Sum_probs=96.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CC-CCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP-YPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp-~~d~sFDlVv~s~~~l 230 (555)
..+++||+|||||..+..|... .++|+| +|++|+..|.+++.--.+.+++... ++ ..+..||+|++.. ++
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvD-----iS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl 198 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVD-----ISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VL 198 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCc-----hhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HH
Confidence 3689999999999999888764 455555 5566667777887655556666442 23 4457899999776 79
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCC---CCC--CChhhHH--HHHHHHHHHHhcCcEEEEEeece
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPE---AYA--HDPENRR--IWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~---~~~--~~~e~~~--~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
.|+.+.+.++.-+...|+|||.|.||+-. .+. -.+..+. .-.-+..+++..||+++..++.+
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 99999999999999999999999998733 111 1111111 12367788999999999877654
No 57
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.14 E-value=3.7e-11 Score=119.76 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=74.8
Q ss_pred CCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHHHHHHHHc--CCC----eEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER--GIP----STLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~i~~A~~r--g~~----v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
+++|||+|||+|.++..|+. +.|+|+|++..++..+....+... ..+ +.+...+.+.+. +.||.|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence 36799999999999999997 478888887777765554421111 111 234444455443 4599999999
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+++|+.++..++..+.+.|||||.+++++-
T Consensus 167 -vleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 -VLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred -HHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 799999999999999999999999999874
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.13 E-value=4.1e-11 Score=128.26 Aligned_cols=174 Identities=14% Similarity=0.255 Sum_probs=111.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+.+|||||||+|.++..+++. .|+++|+++.++..+..+. .+..+.+...|...+ +++||+|++.. .++|
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~eh 240 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDYRDL---NGQFDRIVSVG-MFEH 240 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECchhhc---CCCCCEEEEeC-chhh
Confidence 468999999999999988863 5777777766654443222 134567777776655 37899999877 5777
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEcCCCCCC----Chhh---------HHHHHHHHHHHHhcCcEEEEEeeceEEeec
Q 008748 233 LQ--RDGILLLELDRLLRPGGYFVYSSPEAYAH----DPEN---------RRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 297 (555)
Q Consensus 233 ~~--d~~~~L~el~RvLkPGG~lvis~P~~~~~----~~e~---------~~~~~~l~~l~~~~gw~vv~~~~~~~iw~K 297 (555)
+. +...+++++.++|||||++++........ .... .....++...++ .+|.+...++....|.+
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~ 319 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR 319 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH
Confidence 64 34679999999999999999865321100 0000 001234555444 58998888877777766
Q ss_pred CCCchhhhccCCCCCCCCCCC-CCCCCcccccccccccccccc
Q 008748 298 PISNSCYLKRVPGSRPPLCSS-DDDPDVTWNVLMKACISPYSA 339 (555)
Q Consensus 298 Pl~~~c~~~r~~~~~p~lc~~-~~~~~~~wy~~L~~Ci~~~~~ 339 (555)
.+..-.-.+. ...+.+... ++.....|...|..|......
T Consensus 320 TL~~W~~~f~--~~~~~~~~~~~~~~~r~w~~yl~~~~~~F~~ 360 (383)
T PRK11705 320 TLMAWHENFE--AAWPELADNYSERFYRMWRYYLLSCAGAFRA 360 (383)
T ss_pred HHHHHHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 6654222222 122223222 455567899999999765544
No 59
>PRK06922 hypothetical protein; Provisional
Probab=99.11 E-value=1.7e-10 Score=128.74 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~ 229 (555)
+.+|||||||+|.++..++. ..++|+|+++.++..++.+. ...+.++.+.++|...+| +++++||+|+++. +
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~-v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS-I 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEch-H
Confidence 46899999999999888875 37888998888876665332 233456778888988887 7889999999877 4
Q ss_pred cccc-------------cchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 230 IDWL-------------QRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 230 l~~~-------------~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+|+. .+...+++++.|+|||||.+++...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5542 2446799999999999999999864
No 60
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.11 E-value=9.5e-11 Score=111.51 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=73.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..++.. .|+++|+++..+..+..+... .+.. +.+...|.... .++++||+|+|+- .+
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~-n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NP-P~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER-NGLENVEVVQSDLFEA-LPDGKFDLIVSNP-PF 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH-TTCTTEEEEESSTTTT-CCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-cCcccccccccccccc-ccccceeEEEEcc-ch
Confidence 358999999999999999874 488999998888666654443 3444 78888885432 2368899999875 34
Q ss_pred ccccc-----hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQR-----DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d-----~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+...+ ...++.+..+.|+|||.++++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 33322 356899999999999999876644
No 61
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.11 E-value=3.2e-10 Score=113.59 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=106.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCC--CCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP--YPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..++++ .|+++++.+.+...++.+.+... ..++.+.+.|+..+. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 579999999999999999975 67888888877766665555432 246888999987664 33457999999521
Q ss_pred ccc---------------c--ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 229 RID---------------W--LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~---------------~--~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
... | ..+.+.+++...++|||||.+.++.|+ +...++..++++.+|...+....
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---------HHHHHHHHHHHhcCCCceEEEEe
Confidence 000 1 112366899999999999999998876 34567889999999988876665
Q ss_pred eEEeecCCCchhhhccCCCC
Q 008748 292 TVIWAKPISNSCYLKRVPGS 311 (555)
Q Consensus 292 ~~iw~KPl~~~c~~~r~~~~ 311 (555)
...-.|+.++...+.++.++
T Consensus 196 ~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 196 YPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred cCCCCCcceEEEEEEecCCC
Confidence 54445555666666666554
No 62
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.11 E-value=1.1e-09 Score=113.04 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=98.2
Q ss_pred ceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHH
Q 008748 117 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQI 193 (555)
Q Consensus 117 e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i 193 (555)
........+..|..+.....+...+++.... ....+|||+|||+|.++..++.. .|+++|+++.++..++.
T Consensus 127 ~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred cEEEEECCCCcccCCCCHHHHHHHHHHHhhc------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH
Confidence 3444555566676666655555554443211 12368999999999998887653 68999999988877765
Q ss_pred HHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHH
Q 008748 194 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW 271 (555)
Q Consensus 194 ~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~ 271 (555)
+... .+.. +.+...+ ..+..+++||+|+++. ..+ ....++.++.++|||||+++++.... ...
T Consensus 201 n~~~-n~~~~~~~~~~~~--~~~~~~~~fDlVvan~-~~~---~l~~ll~~~~~~LkpgG~li~sgi~~--------~~~ 265 (288)
T TIGR00406 201 NAEL-NQVSDRLQVKLIY--LEQPIEGKADVIVANI-LAE---VIKELYPQFSRLVKPGGWLILSGILE--------TQA 265 (288)
T ss_pred HHHH-cCCCcceEEEecc--cccccCCCceEEEEec-CHH---HHHHHHHHHHHHcCCCcEEEEEeCcH--------hHH
Confidence 4433 3332 3334333 2334457899999765 222 23568999999999999999987532 234
Q ss_pred HHHHHHHHhcCcEEEEEe
Q 008748 272 NAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 272 ~~l~~l~~~~gw~vv~~~ 289 (555)
.++.+.+++. |+++...
T Consensus 266 ~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 266 QSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred HHHHHHHHcc-CceeeEe
Confidence 5666667666 8776543
No 63
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.11 E-value=1.4e-09 Score=113.48 Aligned_cols=129 Identities=18% Similarity=0.232 Sum_probs=83.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHH-----cCCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~-----rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..|++. .|+++|+++.++..++.+.... ....+.+.+.|+..+ +++||+|+|...
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 468999999999999999874 6889999988887766443221 023467777776544 478999999885
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCCh--h----------hHH----HHHHHHHHHHhcCcEEEEEe
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDP--E----------NRR----IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~--e----------~~~----~~~~l~~l~~~~gw~vv~~~ 289 (555)
++|.++. ..+++.+.+ +.+||.++...|..+.... . ... .-+++++++++.||++...+
T Consensus 222 -L~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 222 -LIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred -EEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 4444433 235666664 4566665544444221100 0 000 12578899999999987544
No 64
>PRK04266 fibrillarin; Provisional
Probab=99.10 E-value=1.2e-09 Score=108.92 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=89.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC----CCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L----p~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..|++. .|+++|+++.++.... +.++++ .++.+..+|.... ++. .+||+|++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 358999999999999999874 5889999988876554 344443 4677778886541 233 5699998543
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
. .. .....++.++.|+|||||.++++.+... .........+++..+.+++.||+.+...+.
T Consensus 150 ~-~p--~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 150 A-QP--NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred C-Ch--hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 1 11 1123468999999999999999654310 011112244566678999999999876664
No 65
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.09 E-value=1.9e-10 Score=117.24 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCcH----HHHHHhc---------CCCccccCChhhhhHHHHHH----HHHc------------------
Q 008748 155 NIRNVLDVGCGVAS----FGAYLLS---------HDIIAMSLAPNDVHENQIQF----ALER------------------ 199 (555)
Q Consensus 155 ~~~~VLDIGCGtG~----~a~~La~---------~~V~~vdis~~dls~a~i~~----A~~r------------------ 199 (555)
+..+|||+|||+|. ++..|++ ..|+|+|+++.++..+.... +.+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999994 4444443 24777777777765554321 0000
Q ss_pred -----CCCeEEEEeCCCCCCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 200 -----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 200 -----g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
...+.|.+.|+...++++++||+|+|.+ +++|.+++ ..+++++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-VLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEech-hHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0247888999888887788999999988 56776544 569999999999999999954
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.09 E-value=3.1e-10 Score=119.73 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=76.5
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||+|||+|.++..++++ .++++|+++.++..+..+.. ..+....+...|... ..++.||+|+|+. .+|+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~~~~~fDlIvsNP-PFH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--DIKGRFDMIISNP-PFHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--ccCCCccEEEECC-CccC
Confidence 47999999999999998863 68899999988877765444 345566666666533 2257899999876 4654
Q ss_pred c-----cchHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 233 L-----QRDGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 233 ~-----~d~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
. ...+.++.++.+.|+|||.|+++.....
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 2 2336799999999999999999886543
No 67
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.09 E-value=8.5e-10 Score=109.55 Aligned_cols=133 Identities=14% Similarity=0.299 Sum_probs=95.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-CCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||||||+|.++..+++. .++++|+++..+..+..+.. ..+..+.+...+...++ ..+++||+|+++. .+++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~-~l~~ 126 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEHPGQFDVVTCME-MLEH 126 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhcCCCccEEEEhh-Hhhc
Confidence 468999999999999888764 57888888777655543332 33445677777766654 3457899999987 5888
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCCh------------------hhHH---HHHHHHHHHHhcCcEEEEEee
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP------------------ENRR---IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~------------------e~~~---~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..++..++..+.++|+|||.++++.+....... .... .-.++.+++++.||+++....
T Consensus 127 ~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 127 VPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 888899999999999999999998764211000 0000 113688899999999886654
No 68
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.08 E-value=1.6e-09 Score=109.35 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=92.5
Q ss_pred eCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHH
Q 008748 121 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL 197 (555)
Q Consensus 121 F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~ 197 (555)
..+.+..|..+.........+.+... .....+|||+|||+|.++..++.. .|+++|+++.++..+..+..
T Consensus 91 ~i~p~~afgtg~h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~- 163 (250)
T PRK00517 91 ELDPGMAFGTGTHPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAE- 163 (250)
T ss_pred EECCCCccCCCCCHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-
Confidence 33444455555544444444433311 023468999999999988877653 48899999888876664443
Q ss_pred HcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHH
Q 008748 198 ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 277 (555)
Q Consensus 198 ~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l 277 (555)
..+....+. ++..+.+||+|+++.. . .....++.++.++|||||+++++.... .....+...
T Consensus 164 ~~~~~~~~~------~~~~~~~fD~Vvani~-~---~~~~~l~~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~ 225 (250)
T PRK00517 164 LNGVELNVY------LPQGDLKADVIVANIL-A---NPLLELAPDLARLLKPGGRLILSGILE--------EQADEVLEA 225 (250)
T ss_pred HcCCCceEE------EccCCCCcCEEEEcCc-H---HHHHHHHHHHHHhcCCCcEEEEEECcH--------hhHHHHHHH
Confidence 333321111 1122237999997642 1 223568899999999999999986432 234567788
Q ss_pred HHhcCcEEEEEeec
Q 008748 278 LKSMCWKIVSKKDQ 291 (555)
Q Consensus 278 ~~~~gw~vv~~~~~ 291 (555)
+++.||+++.....
T Consensus 226 l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 226 YEEAGFTLDEVLER 239 (250)
T ss_pred HHHCCCEEEEEEEe
Confidence 89999998765443
No 69
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.08 E-value=5.3e-10 Score=109.73 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=69.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..|++. .++|+|+++.++ +.|+++...+.+.++|+.. |+++++||+|++.. +++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-----~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~-vL~ 116 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-----EKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKG-VLI 116 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-----HHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECC-hhh
Confidence 457999999999999988753 466666655544 5555555567788888777 88889999999887 566
Q ss_pred ccc--chHHHHHHHHhhcCCCcEEEEEc
Q 008748 232 WLQ--RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 232 ~~~--d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|+. +...+++++.|++ +++++++.
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 664 2366899999997 56777755
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.08 E-value=1.7e-09 Score=95.62 Aligned_cols=98 Identities=15% Similarity=0.044 Sum_probs=72.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.......++.+...|... ++...++||.|++... .
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~ 98 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS-G 98 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-c
Confidence 358999999999999998863 688999988887666644433323457777777654 3333468999998653 2
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+ ....+++++.++|+|||+|++..
T Consensus 99 ~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 G---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred h---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 23578999999999999999854
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.07 E-value=3e-09 Score=106.28 Aligned_cols=122 Identities=20% Similarity=0.294 Sum_probs=86.1
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEeccccc-
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI- 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l- 230 (555)
.+|||+|||+|.++..++.. .++++|+++.++..+.... ...+. ++.+..+|... ++++++||+|+|+...+
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA-ARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 58999999999999999863 6889999988876665443 33343 47888888755 45668899999853111
Q ss_pred ----ccc--------------------cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 231 ----DWL--------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 231 ----~~~--------------------~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
+.. .....++.++.++|+|||.+++.... ..-.++.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---------~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---------DQGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------cHHHHHHHHHHhCCCCce
Confidence 000 01135789999999999999986532 112467788889999766
Q ss_pred EEe
Q 008748 287 SKK 289 (555)
Q Consensus 287 ~~~ 289 (555)
...
T Consensus 238 ~~~ 240 (251)
T TIGR03534 238 ETR 240 (251)
T ss_pred EEE
Confidence 543
No 72
>PRK06202 hypothetical protein; Provisional
Probab=99.06 E-value=1.2e-09 Score=108.77 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
+..+|||+|||+|.++..|++ ..++++|+++.++..+..+.. ..++.+.+.+...++.++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---RPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---cCCCeEEEEecccccccCCCccEEEEC
Confidence 346899999999999888764 157777777766644432211 234566667777777777899999998
Q ss_pred ccccccccch--HHHHHHHHhhcCCCcEEEEE
Q 008748 227 RCRIDWLQRD--GILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 227 ~~~l~~~~d~--~~~L~el~RvLkPGG~lvis 256 (555)
. ++||.+++ ..+++++.|+++ |.+++.
T Consensus 137 ~-~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 137 H-FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred C-eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 8 58888775 469999999998 444443
No 73
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.05 E-value=4.7e-10 Score=108.34 Aligned_cols=101 Identities=21% Similarity=0.345 Sum_probs=72.1
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
...+++||+|||.|.++..|+.+ .++++|+++..+..+..+.+. ...+.+.+.+.... .|.++||+||++. +++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~-~P~~~FDLIV~SE-VlY 117 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF-WPEGRFDLIVLSE-VLY 117 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES--GG
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC-CCCCCeeEEEEeh-HhH
Confidence 44568999999999999999986 788888877666444433221 35689999987654 4678999999998 788
Q ss_pred cccch---HHHHHHHHhhcCCCcEEEEEcC
Q 008748 232 WLQRD---GILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 232 ~~~d~---~~~L~el~RvLkPGG~lvis~P 258 (555)
|..+. ..++..+...|+|||.+++.+.
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 88653 4589999999999999999663
No 74
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.04 E-value=1.3e-09 Score=111.43 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=93.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHc-CCCe--EEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPS--TLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~r-g~~v--~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
++++|||||||.|+++-.|+.+ .|+|+|.+..-. .+-+++++- +... .+.-..++.+|. .++||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 3479999999999999888864 588888776543 332333322 2222 233246788887 68999999988
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcC---CC-------CCCChhhHH-----HHHHHHHHHHhcCcEEEEEeec
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSP---EA-------YAHDPENRR-----IWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P---~~-------~~~~~e~~~-----~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
++.|..+|-..|.++...|+|||.+++-+- .. ..+...... .-..+...+++.||+.++..+.
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 788999999999999999999999997431 10 001111111 1247888999999988876655
No 75
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.04 E-value=2.1e-09 Score=112.84 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=90.9
Q ss_pred CCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccc-----
Q 008748 156 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC----- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~----- 228 (555)
..+|||+|||+|.++..++. ..++|+|+++.++..+..+.......++.+..+|+.++|+++++||+|++.-.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRST 262 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcc
Confidence 45899999999998776553 47889999998887776554333223467888999999988889999998521
Q ss_pred cccc--c-cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 229 RIDW--L-QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~~--~-~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.... . .-...++.++.|+|+|||++++..|... ++.++++..|| ++....+
T Consensus 263 ~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 263 TAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred cccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-chheeee
Confidence 0110 1 1136689999999999999999887631 45567899999 6655443
No 76
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.8e-09 Score=111.04 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=97.0
Q ss_pred CCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHc
Q 008748 123 GGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER 199 (555)
Q Consensus 123 ~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~r 199 (555)
+.|-.|..|.........+.+.... .++++|||+|||+|.++...+. ..+.|+|+++..+..++.+ ++.+
T Consensus 136 DPGlAFGTG~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eN-a~~N 208 (300)
T COG2264 136 DPGLAFGTGTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAREN-ARLN 208 (300)
T ss_pred ccccccCCCCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHH-HHHc
Confidence 3344555555554444444444221 2457999999999998887775 2699999999998777754 4444
Q ss_pred CCCeEEEEeCCCCCCCCC-CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHH
Q 008748 200 GIPSTLGVLGTKRLPYPS-RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 278 (555)
Q Consensus 200 g~~v~~~~~d~~~Lp~~d-~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~ 278 (555)
+............+..+. +.||+|+++-. - .-...+..++.+.|||||++++|+--. ..-+.+.+.+
T Consensus 209 ~v~~~~~~~~~~~~~~~~~~~~DvIVANIL--A--~vl~~La~~~~~~lkpgg~lIlSGIl~--------~q~~~V~~a~ 276 (300)
T COG2264 209 GVELLVQAKGFLLLEVPENGPFDVIVANIL--A--EVLVELAPDIKRLLKPGGRLILSGILE--------DQAESVAEAY 276 (300)
T ss_pred CCchhhhcccccchhhcccCcccEEEehhh--H--HHHHHHHHHHHHHcCCCceEEEEeehH--------hHHHHHHHHH
Confidence 444211111122222333 58999997752 1 222568999999999999999987321 2234666777
Q ss_pred HhcCcEEEEEeec
Q 008748 279 KSMCWKIVSKKDQ 291 (555)
Q Consensus 279 ~~~gw~vv~~~~~ 291 (555)
++.||+++.....
T Consensus 277 ~~~gf~v~~~~~~ 289 (300)
T COG2264 277 EQAGFEVVEVLER 289 (300)
T ss_pred HhCCCeEeEEEec
Confidence 8889999876654
No 77
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.03 E-value=1.2e-09 Score=116.34 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=85.8
Q ss_pred eeeeCCCCCCCCccH-HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHH
Q 008748 118 KINFPGGGTHFHDGA-DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQ 192 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a-~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~ 192 (555)
.+.|.....-|.... +.-.+.+.+.++. ....+|||+|||+|.++..++++ .|+++|+++.++..++
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~ 269 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR 269 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 344444444555432 2223444555542 11248999999999999998863 6889999988887776
Q ss_pred HHHHHHcC---CCeEEEEeCCCCCCCCCCCccEEEeccccccccc-----chHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 193 IQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 193 i~~A~~rg---~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~-----d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.+...... .++.+...|.... ++.++||+|+|+- .+|... ...+++.++.++|+|||.|+++...
T Consensus 270 ~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP-Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 270 LNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP-PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred HHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc-CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 55543321 2457776665322 2346899999875 344321 1256899999999999999998643
No 78
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.03 E-value=1.8e-09 Score=104.62 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=84.4
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-C-CCCCCCccEEEecccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRID 231 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-L-p~~d~sFDlVv~s~~~l~ 231 (555)
.+|||||||+|.++..+++. .++++|+++.++ +.+.+++ +.+..+|+.. + ++++++||+|+|+. +++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-----~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~ 86 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-----LACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQ 86 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-----HHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhH
Confidence 48999999999999988753 345666655444 4444443 5667777654 4 47778999999987 689
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCC----------------------C-CC--hhhHHHHHHHHHHHHhcCcEEE
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAY----------------------A-HD--PENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~----------------------~-~~--~e~~~~~~~l~~l~~~~gw~vv 286 (555)
|+.++..+++++.|++++ ++++.|..- . .+ ........++.+++++.||+++
T Consensus 87 ~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred cCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 999999999999888664 444433310 0 00 0011134578899999999988
Q ss_pred EEee
Q 008748 287 SKKD 290 (555)
Q Consensus 287 ~~~~ 290 (555)
....
T Consensus 164 ~~~~ 167 (194)
T TIGR02081 164 DRAA 167 (194)
T ss_pred EEEE
Confidence 6544
No 79
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.02 E-value=9.5e-10 Score=108.70 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=72.9
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHH------------HcCCCeEEEEeCCCCCCCC-CCCcc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFE 221 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~------------~rg~~v~~~~~d~~~Lp~~-d~sFD 221 (555)
.+|||+|||.|..+.+|+++ .|+|+|+|+..+..++.+... .++.++.+.++|+..++.. .+.||
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 58999999999999999986 788999988877654321100 1234678899998877642 35799
Q ss_pred EEEecccccccccch-HHHHHHHHhhcCCCcEEEEE
Q 008748 222 LAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 222 lVv~s~~~l~~~~d~-~~~L~el~RvLkPGG~lvis 256 (555)
.|+...+.++..++. ..++..+.++|||||++++.
T Consensus 116 ~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 116 AVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999776434332222 45899999999999976654
No 80
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=105.97 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=88.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC-CCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~-~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
...-|||||||+|..+..|.+. ..+|+|||+.|++.++. +.....+..+|+ +.+||..++||.|++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 5678999999999999888763 67799999988876653 222334555663 78999999999999766 688
Q ss_pred cccc-------h----HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 232 WLQR-------D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 232 ~~~d-------~----~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
|.-+ + ..++..++.+|++|+..++. ..++.....+-+..-+..+||.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q------fYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ------FYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEE------ecccchHHHHHHHHHHHhhccC
Confidence 8733 2 23788899999999999984 3344445566677778888884
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=99.01 E-value=3.5e-09 Score=100.91 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=86.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCC---eEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~---v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..++.. .++++|+++.++..++.+.. ..+.. +.+...|... ++.+++||+|+++....
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK-LNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHH-HcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 358999999999999988854 78889998887766654433 33322 6777777644 34456899999764211
Q ss_pred cc--------------------ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 231 DW--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 231 ~~--------------------~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.. ......+++++.++|+|||.+++..+... ..+.+.+++++.||++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--------GEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--------CHHHHHHHHHHCCCeeeeee
Confidence 10 01124579999999999999998776532 12357788999999876443
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=8.2e-09 Score=102.34 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=83.5
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
.+|||+|||+|.++..++.. .++++|+++.++..++.+. ...+.++.+...|+... +++++||+|+++-......
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~-~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNA-LLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCCC
Confidence 58999999999999888763 6789999988776655333 33455677777776543 4567899999863211110
Q ss_pred c--------------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 234 Q--------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 234 ~--------------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
. ....++.++.++|||||.+++..+... ...++.+.+++.||.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--------GVERTLTRLSEAGLDAEV 181 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--------CHHHHHHHHHHCCCCeEE
Confidence 0 124578899999999999998765431 123566677888886543
No 83
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.99 E-value=1.3e-09 Score=102.72 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=63.3
Q ss_pred ccccCChhhhhHHHHHHHHHc---CCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 179 IAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 179 ~~vdis~~dls~a~i~~A~~r---g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
+|+|+|+.|+..+..+..... ..++.+.++|+.++|+++++||+|++++ ++++.+++..+++|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 478888888766653322111 2358899999999999999999999887 688889999999999999999999997
Q ss_pred Ec
Q 008748 256 SS 257 (555)
Q Consensus 256 s~ 257 (555)
.+
T Consensus 80 ~d 81 (160)
T PLN02232 80 LD 81 (160)
T ss_pred EE
Confidence 65
No 84
>PTZ00146 fibrillarin; Provisional
Probab=98.99 E-value=7.6e-09 Score=106.25 Aligned_cols=131 Identities=12% Similarity=0.087 Sum_probs=87.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC---CCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~---Lp~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++.++++. .|+++|+++.+. ..+++.+.++ .++.+++.|+.. +.....+||+|++..
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 468999999999999999864 588999986544 2344555544 567788888643 222345799999765
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
. ...+...++.++.++|||||+|+|...... ...+...+.+.+-.+.+++.||+.++..+.
T Consensus 211 a---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 211 A---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred C---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 2 123334577899999999999999654321 111112223333337789999998765553
No 85
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.99 E-value=6.4e-09 Score=102.66 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=84.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||||||+|.++..|++. .++++|+++.++..++........ ..+.+..+| ++..+++||+|++.. +++|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~-~l~~ 139 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLD-VLIH 139 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcc-hhhc
Confidence 468999999999999999864 688888888887766644433221 256777777 344468899999887 4544
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEcCCCC------------C-CChh-hH--HHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQ--RDGILLLELDRLLRPGGYFVYSSPEAY------------A-HDPE-NR--RIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~--d~~~~L~el~RvLkPGG~lvis~P~~~------------~-~~~e-~~--~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.+ +...+++++.+++++++.+.+ .+... . .... .. ..-.++.++++..||++...+..
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 43 335678888887765544433 22210 0 0000 00 01236778899999988876554
No 86
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.98 E-value=7.4e-09 Score=107.44 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
+..+|||||||+|.++..++++ +++++|+ +..+..+. +.+.+.+. ++.+..+|+...+++. +|+|++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~- 223 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR- 223 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh-
Confidence 3469999999999999998864 4677776 44444333 33334443 4788888987666653 69998887
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcC
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P 258 (555)
++|...+. ..++++++++|+|||++++...
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 45544332 5689999999999999999753
No 87
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.98 E-value=2e-09 Score=111.16 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=101.7
Q ss_pred CceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHH
Q 008748 116 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQ 192 (555)
Q Consensus 116 ~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~ 192 (555)
++.......|..|..|.....+...+++.... .++.+|||+|||+|.++...+. ..|+++|+++..+..++
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR 201 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH
Confidence 34555667778899998877776666665321 2336999999999988777664 36999999999887777
Q ss_pred HHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHH
Q 008748 193 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWN 272 (555)
Q Consensus 193 i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~ 272 (555)
.+. ..++....+.+..... ...+.||+|+++-. ..-...++..+.++|+|||+|++|+--. ...+
T Consensus 202 ~N~-~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~----~~vL~~l~~~~~~~l~~~G~lIlSGIl~--------~~~~ 266 (295)
T PF06325_consen 202 ENA-ELNGVEDRIEVSLSED--LVEGKFDLVVANIL----ADVLLELAPDIASLLKPGGYLILSGILE--------EQED 266 (295)
T ss_dssp HHH-HHTT-TTCEEESCTSC--TCCS-EEEEEEES-----HHHHHHHHHHCHHHEEEEEEEEEEEEEG--------GGHH
T ss_pred HHH-HHcCCCeeEEEEEecc--cccccCCEEEECCC----HHHHHHHHHHHHHhhCCCCEEEEccccH--------HHHH
Confidence 554 4455544544432222 33488999997641 1222457888999999999999987332 2234
Q ss_pred HHHHHHHhcCcEEEEEeec
Q 008748 273 AMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 273 ~l~~l~~~~gw~vv~~~~~ 291 (555)
.+.+.+++ ||+++.....
T Consensus 267 ~v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 267 EVIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp HHHHHHHT-TEEEEEEEEE
T ss_pred HHHHHHHC-CCEEEEEEEE
Confidence 66666776 9998876553
No 88
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.97 E-value=5.2e-09 Score=101.91 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=84.2
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCC-CCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~L-p~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..++. ..|+++|+++.++..++.+. +..+ .++.+..+|.... +..++.||+|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~-~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA-EKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 35899999999999887653 26899999998876665443 3333 3577777887553 33346899999743
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
...+...++.++.++|+|||++++..... ....++...+++.||.
T Consensus 120 ----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 120 ----GSEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGFN 164 (198)
T ss_pred ----CcccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCCC
Confidence 12455779999999999999999855432 3456777888889984
No 89
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.1e-09 Score=109.98 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=103.7
Q ss_pred CceeeeCCCCCCCCccH-HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhH
Q 008748 116 GEKINFPGGGTHFHDGA-DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHE 190 (555)
Q Consensus 116 ~e~~~F~~~g~~f~~~a-~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~ 190 (555)
+..+.|......|.... +.=.+.+.+.++.. . ..+|||+|||.|.++..|++. .++-+|++...+..
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~-~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------L-GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVES 197 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------C-CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHH
Confidence 44566666666666554 33344555655532 1 238999999999999999964 67788888888877
Q ss_pred HHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccch-----HHHHHHHHhhcCCCcEEEEEcCCCCCCCh
Q 008748 191 NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAYAHDP 265 (555)
Q Consensus 191 a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~-----~~~L~el~RvLkPGG~lvis~P~~~~~~~ 265 (555)
++.+.+........+...|. ..+..+ +||+|+|+- .+|--.+. .+++.+..+.|++||.|.|+......+..
T Consensus 198 ar~Nl~~N~~~~~~v~~s~~-~~~v~~-kfd~IisNP-Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~ 274 (300)
T COG2813 198 ARKNLAANGVENTEVWASNL-YEPVEG-KFDLIISNP-PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEK 274 (300)
T ss_pred HHHhHHHcCCCccEEEEecc-cccccc-cccEEEeCC-CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHH
Confidence 77665554433333444443 334444 899999875 35432222 36899999999999999999875544433
Q ss_pred hhHHHHHHHHHHHHhcCcEEEE
Q 008748 266 ENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 266 e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
...+.|...+.+++..||.+..
T Consensus 275 ~L~~~Fg~v~~la~~~gf~Vl~ 296 (300)
T COG2813 275 KLKELFGNVEVLAKNGGFKVLR 296 (300)
T ss_pred HHHHhcCCEEEEEeCCCEEEEE
Confidence 3334444555555566665543
No 90
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=5.1e-09 Score=102.68 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=70.1
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..+++ ..|+++|+++.++..+..++. ..+. .+.+..+|........++||+|++...
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~-~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 151 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE-RLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA 151 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEECCcccCCccCCCccEEEEccC
Confidence 35899999999999988774 368899999887766654433 3343 378888887665445578999998763
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+++ +..++.++|+|||++++..
T Consensus 152 -~~~------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 -AST------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred -cch------hhHHHHHhcCcCcEEEEEE
Confidence 443 3467889999999999854
No 91
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.96 E-value=3.3e-09 Score=106.39 Aligned_cols=166 Identities=17% Similarity=0.253 Sum_probs=110.6
Q ss_pred hhhhhcCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhh
Q 008748 110 HWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPND 187 (555)
Q Consensus 110 ~W~~~~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~d 187 (555)
+|.....+...+.+.|.+|--..+++.+.+...- ....+.....++||||+|.|..+..|+.. .|.+.++|+.|
T Consensus 53 ~~f~S~T~iNG~LgRG~MFvfS~~Q~~~LL~~~~----~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M 128 (265)
T PF05219_consen 53 SWFMSKTDINGILGRGSMFVFSEEQFRKLLRISG----FSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM 128 (265)
T ss_pred HHHHhHHhHhhhhcCCcEEEecHHHHHHHhhhhc----cCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH
Confidence 3444455667778888888888777765554221 11122234568999999999999999874 67777776655
Q ss_pred hhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc--CCC-----
Q 008748 188 VHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS--PEA----- 260 (555)
Q Consensus 188 ls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~--P~~----- 260 (555)
...-+++|.. +.+..+..-.+.+||+|.|.+ ++.-..+|..+|+++++.|+|+|.++++. |..
T Consensus 129 -----r~rL~~kg~~----vl~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~ 198 (265)
T PF05219_consen 129 -----RWRLSKKGFT----VLDIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEF 198 (265)
T ss_pred -----HHHHHhCCCe----EEehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEc
Confidence 3455566654 233333333346799999998 68888999999999999999999999864 210
Q ss_pred ----CCCChhh--------HHHHHHHHHHHHhcCcEEEEEe
Q 008748 261 ----YAHDPEN--------RRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 261 ----~~~~~e~--------~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.....+. .+.-..+.++++.+||++....
T Consensus 199 ~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 199 GGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred CCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0011110 1122345588999999988544
No 92
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.95 E-value=2.6e-09 Score=113.79 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=80.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC--CCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L--p~~d~sFDlVv~s~~~ 229 (555)
...+||||||+|.++..+|.. .++|+|++..++..+..+.....-.++.+..+|+..+ .++++++|.|++.+ .
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-P 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-P 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-C
Confidence 358999999999999999963 7899999998887776554433334688888887654 47789999999776 4
Q ss_pred cccccch------HHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRD------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~------~~~L~el~RvLkPGG~lvis~ 257 (555)
.+|.... ..++.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 6665433 468999999999999999965
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=7.2e-09 Score=102.22 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=70.8
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||||||+|+++..|++ ..|+++|+++..+..++.+.......++.+..+|......+.+.||+|++... .
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~-~ 155 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA-G 155 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC-c
Confidence 46899999999999988774 26889999988876666444332233588899997666556688999997663 3
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+. ....+.+.|||||.+++..
T Consensus 156 ~~------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 156 PD------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cc------chHHHHHhhCCCcEEEEEE
Confidence 32 3456778999999999854
No 94
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.91 E-value=1e-08 Score=97.30 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=92.0
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEecc--c
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR--C 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~--~ 228 (555)
.+|||+|||.|.+...|++. ..+|+|+++..+.-|+ ++|+..+.. +.|.+.|+..-.+..+.||+|+--. .
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 38999999999999999974 4788999888776654 677766665 8999999877677778899988532 1
Q ss_pred cccccc-----chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 229 RIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 229 ~l~~~~-----d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
++...+ .+..++..+.++|+|||+|+|+.-+. ..+++.+.++..+|+.....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~---------T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF---------TKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc---------cHHHHHHHHhcCCeEEEEee
Confidence 222221 12347899999999999999988663 24578888888888776443
No 95
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.91 E-value=1e-08 Score=101.16 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=70.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||||||+|.++..|++. .|+++|+++..+..+..++ .+.+ .++.+..+|........+.||+|++...
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~-~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 155 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL-RKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA- 155 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-
Confidence 468999999999999988863 2889999988876666444 3334 3578888887655444468999997653
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.. .+...+.+.|+|||++++..
T Consensus 156 ~~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GP------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cc------cccHHHHHhcCcCcEEEEEE
Confidence 32 24567889999999999854
No 96
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.89 E-value=1.3e-09 Score=107.63 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=78.5
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEE-------eCCCCCCCCCCCccEEEecc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGV-------LGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~-------~d~~~Lp~~d~sFDlVv~s~ 227 (555)
+.++|+|||+|..+..+++. +|+++|++..|+ ++|.+. .++.... .+...|--.+++.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL-----~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAML-----KVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHH-----HHhhcC-CCcccccCCccccccccccccCCCcceeeehhhh
Confidence 48999999999777777764 788887766555 566554 3332222 22233333489999999999
Q ss_pred cccccccchHHHHHHHHhhcCCCc-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
| +||... +.+++++.|+||+.| .+++ |.+.. +...|.++..++.+.++.
T Consensus 109 a-~HWFdl-e~fy~~~~rvLRk~Gg~iav-----W~Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 A-VHWFDL-ERFYKEAYRVLRKDGGLIAV-----WNYND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred h-HHhhch-HHHHHHHHHHcCCCCCEEEE-----EEccC-CCcCCHHHHHHHHHHhhc
Confidence 5 999754 679999999999877 5554 11111 234577888888888775
No 97
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.88 E-value=4e-08 Score=105.43 Aligned_cols=124 Identities=12% Similarity=0.065 Sum_probs=86.5
Q ss_pred CEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC-CCCCccEEEecccccc
Q 008748 157 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-PSRSFELAHCSRCRID 231 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~-~d~sFDlVv~s~~~l~ 231 (555)
.+|||+|||+|.++..++. ..++++|+++.++..++.+. ...+.++.+..+|.....+ ..++||+|+|+-..+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa-~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA-ADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 4899999999999988874 36889999998887776443 3445678888888754333 2357999998532111
Q ss_pred cc--------------------cc----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 232 WL--------------------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 232 ~~--------------------~d----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
-. ++ ...++.++.+.|+|||.+++.... ..-+.+.+++++.||..+.
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------DQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------cHHHHHHHHHHHCCCcEEE
Confidence 00 01 134677778899999999885533 1234778888889997665
Q ss_pred Eee
Q 008748 288 KKD 290 (555)
Q Consensus 288 ~~~ 290 (555)
...
T Consensus 403 v~k 405 (423)
T PRK14966 403 TLP 405 (423)
T ss_pred EEE
Confidence 443
No 98
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.88 E-value=8.3e-09 Score=102.37 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=71.2
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHH------------HcCCCeEEEEeCCCCCCCC-CCCcc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFE 221 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~------------~rg~~v~~~~~d~~~Lp~~-d~sFD 221 (555)
.+|||+|||.|..+..|+++ .|+|+|+++..+..++.+... .....+.+.++|+..++.. .+.||
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd 118 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVD 118 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCee
Confidence 58999999999999999986 788998888877654321110 0134577888998777533 25799
Q ss_pred EEEecccccccccch--HHHHHHHHhhcCCCcEEEE
Q 008748 222 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 222 lVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvi 255 (555)
+|+-..+ +++++.. ..++..+.++|+|||++++
T Consensus 119 ~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 119 AVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9997664 4444322 5689999999999997554
No 99
>PLN03075 nicotianamine synthase; Provisional
Probab=98.84 E-value=1.7e-08 Score=104.03 Aligned_cols=102 Identities=9% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCcHHHHHH-hc-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYL-LS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~L-a~-----~~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
.+++|+|||||.|.++..+ +. ..++++|+++.++..++..+....+ ..+.|..+|+.+++...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 4579999999988554443 32 2588999999888777644433233 45899999987764334789999987
Q ss_pred ccccccc-cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 227 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 227 ~~~l~~~-~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+.++|. ++...++..+.+.|+|||++++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 444443 677889999999999999999965
No 100
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.83 E-value=1.4e-08 Score=84.46 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=72.0
Q ss_pred EEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC-CCCCccEEEeccccccc-
Q 008748 158 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW- 232 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~-~d~sFDlVv~s~~~l~~- 232 (555)
+|||+|||+|.++..++. ..++++|+++..+..+.............+...|...... ..++||+|++.. .+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~-~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP-PLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc-ceeeh
Confidence 489999999999988886 3677888777655443321111223456777788766553 457899999887 4666
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEE
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis 256 (555)
......++..+.+.|+|||.++++
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 667788999999999999999985
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.83 E-value=8.4e-08 Score=93.14 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=70.2
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..++. ..|+++|+++.++..++.+.......++.+..+|+.. ++.....+|.|+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~--- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG--- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC---
Confidence 35899999999999988864 3689999999888776654433322357787777643 222223467765322
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..+...++.++.++|+|||++++..+.
T Consensus 118 --~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 --GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234467999999999999999998754
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.83 E-value=2e-09 Score=94.83 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=72.8
Q ss_pred CEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCC--CCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~l 230 (555)
.+|||+|||+|.++..+++ ..++++|+++..+..+..++.... ..++.+.++|...+. +++++||+|+++--..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 4799999999999988875 467888888876655554443322 246899999976665 7788999999865322
Q ss_pred cccc-------chHHHHHHHHhhcCCCcEEEEEcC
Q 008748 231 DWLQ-------RDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 231 ~~~~-------d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.... ....+++++.++|||||.+++..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2111 124689999999999999999775
No 103
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.81 E-value=2.7e-08 Score=103.29 Aligned_cols=101 Identities=16% Similarity=0.260 Sum_probs=70.7
Q ss_pred CEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCC-CCCCCCC---ccEEEec
Q 008748 157 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPYPSRS---FELAHCS 226 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~-Lp~~d~s---FDlVv~s 226 (555)
.+|||+|||+|..+..|+++ .++++|+|+.++..++.+..... +.++.+.++|+.+ ++++... .++++..
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 58999999999999888753 58889998888877765544332 3456678888765 4444332 2334433
Q ss_pred ccccccccc--hHHHHHHHHhhcCCCcEEEEEc
Q 008748 227 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 227 ~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~ 257 (555)
.+.+++.+. ...+|+++.++|+|||.|+|..
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 334555543 3558999999999999999865
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.80 E-value=5.1e-08 Score=99.01 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=83.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..++.. .++++|+++.++..+..+.......++.+..+|... ++++++||+|+++...+.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 458999999999999988753 688899988877666644431223467888888633 233578999998521110
Q ss_pred -------------c------------ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 232 -------------W------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 232 -------------~------------~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
+ ......++.++.++|+|||++++.... ..-..+.+++++.||..+
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------~~~~~~~~~l~~~gf~~v 258 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------DQGEAVRALLAAAGFADV 258 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------hHHHHHHHHHHhCCCcee
Confidence 0 011245788888999999999985422 112357778888999754
Q ss_pred EE
Q 008748 287 SK 288 (555)
Q Consensus 287 ~~ 288 (555)
..
T Consensus 259 ~~ 260 (275)
T PRK09328 259 ET 260 (275)
T ss_pred EE
Confidence 43
No 105
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.79 E-value=5.4e-08 Score=94.98 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=82.9
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC-e-EEEEeCCCCC--CC------CCCCccEE
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-S-TLGVLGTKRL--PY------PSRSFELA 223 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~-v-~~~~~d~~~L--p~------~d~sFDlV 223 (555)
+|||||||||..+.+++++ .....|++..... .......+.+.+ + .-...|+..- +. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~-sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRP-SIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHh-hHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999875 1223344333211 111122222221 1 1122333222 22 34689999
Q ss_pred Eecccccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCC--CChh----------------hHHHHHHHHHHHHhcCc
Q 008748 224 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA--HDPE----------------NRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 224 v~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~--~~~e----------------~~~~~~~l~~l~~~~gw 283 (555)
+|.+ .+|..+-. +.+++.+.++|++||.|++-+|..+. +..+ ..+..+++.+++.+.|+
T Consensus 107 ~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999 57766443 55999999999999999999987532 1111 12233588999999999
Q ss_pred EEEEEeec
Q 008748 284 KIVSKKDQ 291 (555)
Q Consensus 284 ~vv~~~~~ 291 (555)
.+.+...+
T Consensus 186 ~l~~~~~M 193 (204)
T PF06080_consen 186 ELEEDIDM 193 (204)
T ss_pred ccCccccc
Confidence 98877666
No 106
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.78 E-value=6.7e-08 Score=99.61 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++.. .++++|+++.++..++.+. ...+. ++.+..+|... ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~-~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI-ERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 358999999999999999863 6889999988887776443 33443 47888888633 2345689999985110
Q ss_pred ------------ccccc------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 230 ------------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 230 ------------l~~~~------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
+++.+ ....++.++.++|+|||++++..... +..+.+++.+.+|.-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~----------~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS----------MEALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHHhCCCce
Confidence 01110 11457899999999999999866431 246777788888755
Q ss_pred EEE
Q 008748 286 VSK 288 (555)
Q Consensus 286 v~~ 288 (555)
...
T Consensus 270 ~~~ 272 (284)
T TIGR03533 270 LEF 272 (284)
T ss_pred eee
Confidence 443
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.78 E-value=5.7e-08 Score=95.37 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=69.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..|+.. .++++|+++..+..+..++.+....++.+..+|......+.++||+|++... .++
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~~~- 156 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-APE- 156 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-chh-
Confidence 468999999999998877653 6888999887776665444433223578888886443223478999998763 433
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+..++.+.|+|||.+++...
T Consensus 157 -----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 157 -----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -----hhHHHHHhcCCCcEEEEEEc
Confidence 35678899999999998654
No 108
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.74 E-value=5.1e-08 Score=94.05 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=64.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------~~d~sFDl 222 (555)
..+|||+|||+|.++..++.. .|+++|+++.. ...++.+..+|..+.+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 468999999999998887653 48888888743 1235667777765542 45678999
Q ss_pred EEecccc-------cccc---cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 223 AHCSRCR-------IDWL---QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 223 Vv~s~~~-------l~~~---~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|++..+. +++. .....++.++.++|+|||++++..
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9975421 1111 112568999999999999999965
No 109
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.73 E-value=4.5e-08 Score=95.39 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=72.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
...|-|+|||.+.++..+... .|...|+... +-.+..+|+..+|+++++.|++++..+ |. ..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLS-LM-GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLS-LM-GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhh-hh-CC
Confidence 358999999999999887643 4666666432 113567899999999999999997764 32 36
Q ss_pred chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 235 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
+...++.|+.|+|||||.|.|+...... ..-+.+.+.++++||++....
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf------~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRF------ENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-------S-HHHHHHHHHCTTEEEEEEE
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccC------cCHHHHHHHHHHCCCeEEecc
Confidence 7788999999999999999997644311 123578888999999988653
No 110
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.72 E-value=1e-07 Score=98.05 Aligned_cols=121 Identities=14% Similarity=0.241 Sum_probs=82.6
Q ss_pred CEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 157 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
.+|||+|||+|.++..++. ..++++|+++..+..+..+. ...+. ++.+..+|... ++++++||+|+++--
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~-~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA-EKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 5899999999999999885 36889999988887666443 33343 37888888644 344458999998511
Q ss_pred ----------cccccc------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHH-hcCcEE
Q 008748 229 ----------RIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKI 285 (555)
Q Consensus 229 ----------~l~~~~------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~-~~gw~v 285 (555)
.+.|.+ ....++.++.+.|+|||++++..... .-..+.+++. ..+|..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---------q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---------QQKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---------HHHHHHHHHHhcCCCce
Confidence 111211 23457899999999999999866542 1235566666 467865
Q ss_pred EEE
Q 008748 286 VSK 288 (555)
Q Consensus 286 v~~ 288 (555)
+..
T Consensus 265 ~~~ 267 (284)
T TIGR00536 265 VEN 267 (284)
T ss_pred eEE
Confidence 443
No 111
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.69 E-value=4e-07 Score=92.21 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=81.3
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CCC-CCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPY-PSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp~-~d~sFDlVv~s~~~l 230 (555)
.+|||+|||+|.++..++.. .++++|+++.++..++.+.. ..+ ..+..+|... ++- ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~-~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA-DAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 48999999999999988752 68899999888866664433 333 4677777643 221 125799999763211
Q ss_pred c-------------cc--------cc----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 231 D-------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 231 ~-------------~~--------~d----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
. +. .+ ...++..+.++|+|||.+++..... ...++..++++.||..
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------QAPLAVEAFARAGLIA 235 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------hHHHHHHHHHHCCCCc
Confidence 1 00 01 1357778889999999999876431 2346778888888865
Q ss_pred EEEe
Q 008748 286 VSKK 289 (555)
Q Consensus 286 v~~~ 289 (555)
....
T Consensus 236 ~~~~ 239 (251)
T TIGR03704 236 RVAS 239 (251)
T ss_pred eeeE
Confidence 5433
No 112
>PRK00811 spermidine synthase; Provisional
Probab=98.65 E-value=2e-07 Score=96.07 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH-----cCCCeEEEEeCCCCC-CCCCCCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRL-PYPSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~-----rg~~v~~~~~d~~~L-p~~d~sFDlVv 224 (555)
++++||+||||.|.++..++++ +|+++|+++..+..+...+..- ...++.+..+|.... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999998764 5788889888776665443321 134678888886442 33457899999
Q ss_pred ecccccccccc----hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 ~s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+.. .-++... ...+++.+.+.|+|||.+++.....
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 743 2333221 1557899999999999999865443
No 113
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=3e-08 Score=97.13 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=97.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
...++|||||.|.+...|... +++-+|.+..|+..++ -+...+......+.|-+.|+|.+++||+|+++. .+||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhh-hhhh
Confidence 357999999999999999875 4566777766653332 222234556788999999999999999999887 6999
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhh---------------------HHHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN---------------------RRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~---------------------~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+.+....+..+...|||+|.|+-+.-... .+.+. ...-+.+-.++.++||.......+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasmlggd-TLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGD-TLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccc-cHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 99999999999999999999996543210 01111 112236778899999987765444
Q ss_pred e
Q 008748 292 T 292 (555)
Q Consensus 292 ~ 292 (555)
.
T Consensus 229 E 229 (325)
T KOG2940|consen 229 E 229 (325)
T ss_pred c
Confidence 3
No 114
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=2.7e-07 Score=96.18 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=80.9
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc-
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~- 229 (555)
.+|||+|||+|.++..++.. .++++|+++.++..++.+. ...+. ++.+..+|... ++++++||+|+|+--.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~-~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI-ERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 58999999999999998853 6889999998887776443 33343 47888888643 2334689999985210
Q ss_pred -----------ccccc------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 230 -----------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 230 -----------l~~~~------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
+++.+ ....++.++.++|+|||.+++..... ..++.+++.+.+|.-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----------~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----------RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHhhCCCEEE
Confidence 01111 11457899999999999999865431 2346666777776443
No 115
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.62 E-value=2.7e-08 Score=97.63 Aligned_cols=139 Identities=15% Similarity=0.217 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
...++||.|||.|..+..|+-. .|..+|..+.-+..+..........-..+....++++..+.++||+|++.-|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4579999999999999987654 3444444444443333221112222356777788888666689999999997554
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEcC---CCC-CCChhh---HHHHHHHHHHHHhcCcEEEEEeeceE
Q 008748 232 WLQ-RDGILLLELDRLLRPGGYFVYSSP---EAY-AHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQTV 293 (555)
Q Consensus 232 ~~~-d~~~~L~el~RvLkPGG~lvis~P---~~~-~~~~e~---~~~~~~l~~l~~~~gw~vv~~~~~~~ 293 (555)
..+ +.-.+|+.+...|+|+|.+++-.. ... ..+.++ .+.-+.+.++++++|++++..+.+..
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 442 235699999999999999998431 110 111211 23446788999999999998887754
No 116
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.61 E-value=1.8e-07 Score=93.23 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
....|.|+|||.+.++..-. ..|..+|+.+. +-.+..+|+.++|.+|++.|++++..+ -...
T Consensus 180 ~~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSER-HKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS--LMGT 241 (325)
T ss_pred CceEEEecccchhhhhhccc-cceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh--hhcc
Confidence 34689999999998876221 25777766432 334667899999999999999986543 2357
Q ss_pred chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 235 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+...++.|++|+|++||.++|..-... .. .-..+.+.+..+||.+.....
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SR--f~----dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSR--FS----DVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhh--cc----cHHHHHHHHHHcCCeeeehhh
Confidence 788899999999999999999654321 11 123577889999998876543
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=4.4e-07 Score=98.76 Aligned_cols=125 Identities=21% Similarity=0.301 Sum_probs=83.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEe----
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC---- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~---- 225 (555)
+.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...+..+.+..+|+..++ +..++||.|++
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~-n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRE-NLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 468999999999999888753 68889999888766653 34445666788888887654 34578999994
Q ss_pred ccc-c------cccccc----------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CcEEE
Q 008748 226 SRC-R------IDWLQR----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 286 (555)
Q Consensus 226 s~~-~------l~~~~d----------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw~vv 286 (555)
+.. . +.|... ...++.++.++|||||++++++-.... .+.. ..+..++++. +|+++
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~Ene---~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP--EENE---QQIKAFLARHPDAELL 397 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--hhCH---HHHHHHHHhCCCCEEe
Confidence 321 1 112111 135899999999999999998854321 1221 2445555544 45544
No 118
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.56 E-value=2.8e-07 Score=89.91 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=85.3
Q ss_pred EEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CC--CCCCCccEEEeccccc
Q 008748 158 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 230 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp--~~d~sFDlVv~s~~~l 230 (555)
.+||||||.|.+...+|. ..++|+|+...-+..+..+.......++.+..+|+.. +. ++++++|.|+..+ .-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CC
Confidence 799999999999999986 3789999999888777755555555678899888766 32 5668999999766 35
Q ss_pred ccccch--------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc--CcEEEE
Q 008748 231 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM--CWKIVS 287 (555)
Q Consensus 231 ~~~~d~--------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~--gw~vv~ 287 (555)
.|.... ..++.++.++|+|||.|.+.+-. ...+..+.+.++.. +|+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--------~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--------EEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--------HHHHHHHHHHHHhcCcCeEEcc
Confidence 554322 45999999999999999996532 23456666777663 777664
No 119
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=4.6e-07 Score=98.80 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=84.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC----CCCCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP----YPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp----~~d~sFDlVv~ 225 (555)
+.+|||+|||+|..+..+++. .|+++|+++..+...+.+. ...|. ++.+..+|+..++ +..++||.|++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~-~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENA-QRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHH-HHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 468999999999999888752 5889999988886666444 33444 5788888887765 44578999995
Q ss_pred ----cc-cccccccc----------------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-Cc
Q 008748 226 ----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CW 283 (555)
Q Consensus 226 ----s~-~~l~~~~d----------------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw 283 (555)
+. .++...++ ...+|.++.++|||||+++.++-.... .+ .-..+..++++. +|
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~--~E---ne~~v~~~l~~~~~~ 406 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP--AE---NEAQIEQFLARHPDW 406 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--hh---HHHHHHHHHHhCCCc
Confidence 21 12222222 245899999999999999988755321 11 123455666655 46
Q ss_pred EEE
Q 008748 284 KIV 286 (555)
Q Consensus 284 ~vv 286 (555)
++.
T Consensus 407 ~~~ 409 (434)
T PRK14901 407 KLE 409 (434)
T ss_pred Eec
Confidence 543
No 120
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.55 E-value=3.7e-07 Score=90.99 Aligned_cols=102 Identities=16% Similarity=0.039 Sum_probs=75.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHH------------HHHcCCCeEEEEeCCCCCCCC---CC
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQF------------ALERGIPSTLGVLGTKRLPYP---SR 218 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~------------A~~rg~~v~~~~~d~~~Lp~~---d~ 218 (555)
..+||+.|||.|.-+.+|+++ .|+|+|+|+..+.....+. ...++..+.+.++|+..++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 358999999999999999975 7888888887776543211 112356789999998888642 26
Q ss_pred CccEEEecccccccccch-HHHHHHHHhhcCCCcEEEEEc
Q 008748 219 SFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 219 sFDlVv~s~~~l~~~~d~-~~~L~el~RvLkPGG~lvis~ 257 (555)
.||+|+-..+..+..++. .++.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 799988655433333333 558999999999999988754
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.54 E-value=4.9e-07 Score=94.75 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=68.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||||||+|.++..+++. .|+++|+++.++..++.+. .+.+ .++.+..+|....+...++||+|++...
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l-~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g- 158 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-RRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG- 158 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCChhhcccccCCccEEEECCc-
Confidence 358999999999999998852 3888999988876665433 3333 3577888887665555568999997653
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
++. ....+.+.|+|||.+++..
T Consensus 159 ~~~------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDE------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHH------hHHHHHHhcCCCCEEEEEe
Confidence 322 3445778999999998854
No 122
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.52 E-value=2.4e-07 Score=97.44 Aligned_cols=105 Identities=20% Similarity=0.397 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHc----------CCCeEEEEeCCCC------CCC
Q 008748 155 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKR------LPY 215 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~r----------g~~v~~~~~d~~~------Lp~ 215 (555)
...+|||+|||-|.-..-... ..++|+|++...+.++..+...-+ ...+.+..+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 457999999998875544443 268899999998888776652211 1245677777432 222
Q ss_pred CCCCccEEEecccccccccch----HHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 216 PSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 216 ~d~sFDlVv~s~~~l~~~~d~----~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
....||+|-|.+ ++||.-.. ..+|..+...|+|||+|+.++|..
T Consensus 142 ~~~~FDvVScQF-alHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQF-ALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHH-HHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 335899999988 58887322 448999999999999999999874
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.50 E-value=8.4e-07 Score=97.05 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=74.0
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEe----
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC---- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~---- 225 (555)
+.+|||+|||+|..+..+++ ..|+++|+++.++..++.+. .+.+. ++.+..+|+..++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~-~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHA-SALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH-HHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 36899999999998877764 26889999998887666443 44454 4688888887765 4578999994
Q ss_pred cccc-c------ccccc----------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 SRCR-I------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 s~~~-l------~~~~d----------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+... + .|..+ ...+|.++.++|||||++++++-..
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2211 1 11111 1348999999999999999988654
No 124
>PRK04457 spermidine synthase; Provisional
Probab=98.50 E-value=5.1e-07 Score=92.05 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCC-CCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRL-PYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~L-p~~d~sFDlVv~s~~ 228 (555)
.+++|||||||.|.++..++.. .++++|+++..+..+...+.... ..++.+.++|.... .-..++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 3568999999999999988753 67888888877765554333221 24678888886432 222367999996421
Q ss_pred cccccc---chHHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWLQ---RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~~---d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.-...+ ....+++++.++|+|||.+++..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 011111 12579999999999999999853
No 125
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.49 E-value=5.5e-07 Score=97.95 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=72.7
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEE--EEeCCCCCCC--CCCCccEEEe--
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLPY--PSRSFELAHC-- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~--~~~d~~~Lp~--~d~sFDlVv~-- 225 (555)
+.+|||+|||+|..+..+++ ..|+++|+++..+.....+. ...+..+.+ ..+|....++ +.++||.|++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~-~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENL-KRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 46899999999999988875 36889999888876665443 344555444 4455544443 4678999994
Q ss_pred --cc-cccccccc----------------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 --SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 --s~-~~l~~~~d----------------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+. .+++..++ ...+|.++.++|||||.+++++-..
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 22 12322222 2458999999999999999988664
No 126
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.47 E-value=3.2e-07 Score=94.06 Aligned_cols=104 Identities=19% Similarity=0.362 Sum_probs=75.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHH--c----CCCeEEEEeCC------CCCCCCCCCc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE--R----GIPSTLGVLGT------KRLPYPSRSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~--r----g~~v~~~~~d~------~~Lp~~d~sF 220 (555)
+..+||+|||-|.-+...-.+ .++++||+...+.+++.+.-.- + ...+.|..+|. ..+++.+.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 357999999999766555443 6788888887776665443211 1 12467888884 2355666679
Q ss_pred cEEEeccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 221 ELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 221 DlVv~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
|+|-|.++ +||.= ....+|+++.+.|||||+|+-+.|..
T Consensus 198 DivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 198 DIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred ceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 99999884 88762 22448999999999999999999985
No 127
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.46 E-value=3.8e-07 Score=90.01 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGV 207 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~ 207 (555)
......+.+.+.. .+..+|||||||+|++++.|+.. .|+++|..+.-...++.+++.....++.+.+
T Consensus 58 P~~~a~~l~~L~l--------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDL--------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC---------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhc--------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 3444455555553 23469999999999999988852 4778999887666666555544444788999
Q ss_pred eCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 208 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 208 ~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+|...-.-....||.|++..+ ..- .-..+.+.|++||++++-..
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~~------ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VPE------IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeec-cch------HHHHHHHhcCCCcEEEEEEc
Confidence 886443223467999998764 332 23457778999999998543
No 128
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.45 E-value=1.8e-06 Score=88.26 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----CCCeEEEEeCCCC-CCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKR-LPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r----g~~v~~~~~d~~~-Lp~~d~sFDlVv~ 225 (555)
++++||+||||+|.++..++.. .++++|+++..+..+...+.... ..++.+...|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3569999999999999888753 57888888877655553332211 2346677766533 2222478999997
Q ss_pred cccccccccc----hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 SRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.. ....... ...+++.+.++|+|||.+++.....
T Consensus 152 D~-~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 152 DS-TDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred eC-CCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 54 2222111 2468899999999999999875543
No 129
>PLN02366 spermidine synthase
Probab=98.44 E-value=1.7e-06 Score=90.25 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCCC-C-CCCCCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL-P-YPSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~L-p-~~d~sFDlVv 224 (555)
++++||+||||.|.++..+++. +|+.+|+++..+..+...+... ...++.++.+|.... . .++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4579999999999999999874 4667788776665444333221 134688888885332 1 2356899999
Q ss_pred ecccccccccc----hHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 225 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 225 ~s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
+-. .-++.+. ...+++.+.++|+|||.+++.....+
T Consensus 171 ~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 171 VDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMW 210 (308)
T ss_pred EcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcc
Confidence 743 2222221 14589999999999999987554443
No 130
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.44 E-value=3.9e-06 Score=80.71 Aligned_cols=119 Identities=16% Similarity=0.051 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~ 229 (555)
+..+++|||||+|+.+..++. .+++++|-++..+.....+.++-...++.++.+++-. |+-. .+||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGGg- 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGGG- 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECCC-
Confidence 346899999999999999882 3789999888777655544444334567888888643 3322 27999997653
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCc-EEEE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW-KIVS 287 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw-~vv~ 287 (555)
.+.+.+|+.+...|||||++++..-. .+......+.+++.|+ +++.
T Consensus 112 ----~~i~~ile~~~~~l~~ggrlV~nait--------lE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 112 ----GNIEEILEAAWERLKPGGRLVANAIT--------LETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred ----CCHHHHHHHHHHHcCcCCeEEEEeec--------HHHHHHHHHHHHHcCCceEEE
Confidence 34577999999999999999984422 2334456667788898 5443
No 131
>PRK01581 speE spermidine synthase; Validated
Probab=98.44 E-value=2.1e-06 Score=90.71 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=95.6
Q ss_pred eeCCCCCCCCccH-HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHH
Q 008748 120 NFPGGGTHFHDGA-DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 120 ~F~~~g~~f~~~a-~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~ 194 (555)
-|.+|.-++...- ..|.+.+....-.. ..++++||+||||+|..++.+++. .|+++|+++.++..+...
T Consensus 120 L~LDG~~Q~se~DE~iYHE~Lvhp~m~~------h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~ 193 (374)
T PRK01581 120 LYLDKQLQFSSVDEQIYHEALVHPIMSK------VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNV 193 (374)
T ss_pred EEECCeeccccccHHHHHHHHHHHHHHh------CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhc
Confidence 3555554444433 34555555422111 134579999999999988888863 577788877666544420
Q ss_pred --HH--HH---cCCCeEEEEeCCCC-CCCCCCCccEEEecccccccc-----cchHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 195 --FA--LE---RGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWL-----QRDGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 195 --~A--~~---rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~l~~~-----~d~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
+. .+ ...++.+.++|+.. +.-..+.||+|++.. .-... -....+++.+.+.|+|||.+++.....+
T Consensus 194 ~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~ 272 (374)
T PRK01581 194 PELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA 272 (374)
T ss_pred cccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence 00 00 13568888888654 334456899999753 11110 0114589999999999999988654332
Q ss_pred CCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 262 AHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 262 ~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
. ....+..+.+.+++.++.+...
T Consensus 273 ~----~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 273 D----APLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred h----hHHHHHHHHHHHHHhCCceEEE
Confidence 1 1233344677788888866643
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=98.43 E-value=8e-07 Score=90.66 Aligned_cols=124 Identities=12% Similarity=0.087 Sum_probs=81.9
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||+|||+|.++..++.+ .|+++|+++.++ +.++++..++.+..+|+..+.. +++||+|+++....+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-----~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-----RIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 58999999999998887652 577787776555 4444444567888899877653 4689999986532221
Q ss_pred ccc-------------------hHHHHHHHHhhcCCCcEEEEEc--CCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 233 LQR-------------------DGILLLELDRLLRPGGYFVYSS--PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 233 ~~d-------------------~~~~L~el~RvLkPGG~lvis~--P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
... ...++..+.++|+|+|.+.+.- -+.| +..- .=++..++++..||....-.+
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y-~~sl---~~~~y~~~l~~~g~~~~~~~~ 214 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY-DGTM---KSNKYLKWSKQTGLVTYAGCG 214 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc-cccC---CHHHHHHHHHhcCcEecCCCC
Confidence 110 1356788889999999877642 1112 1111 123667889999997765443
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.43 E-value=9.6e-07 Score=90.04 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEe----c
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC----S 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~----s 226 (555)
+.+|||+|||+|..+..+++ ..|+++|+++..+.....++.+....++.+...|...++...+.||.|++ +
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 46899999999999988775 26889999988886666444433223567888887766655567999985 2
Q ss_pred cc-ccc--------ccc--------chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 227 RC-RID--------WLQ--------RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 227 ~~-~l~--------~~~--------d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.. ++. +.+ ....+|.++.++|||||+++.++-..
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 11 111 111 11348999999999999999987553
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=1.6e-06 Score=94.82 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=81.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC--CCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp--~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|..+..+++. .|+++|+++..+..++.+. .+.+. ++.+..+|+..++ ++ ++||+|++.-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENA-KRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 368999999999999888752 6889999988876665433 34443 4788888876653 33 6899999632
Q ss_pred c-----ccc------cccc----------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CcEE
Q 008748 228 C-----RID------WLQR----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKI 285 (555)
Q Consensus 228 ~-----~l~------~~~d----------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw~v 285 (555)
. .+. |... ...++.++.++|||||.+++++-.... .+ .-..+..++++. .|++
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~E---ne~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK--EE---NEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh--hh---hHHHHHHHHHhCCCcEE
Confidence 0 111 1101 134799999999999999987755321 11 112445556554 3655
Q ss_pred E
Q 008748 286 V 286 (555)
Q Consensus 286 v 286 (555)
+
T Consensus 404 ~ 404 (444)
T PRK14902 404 V 404 (444)
T ss_pred e
Confidence 4
No 135
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=6.8e-07 Score=97.36 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=74.8
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC-CCCCCccEEEe---
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHC--- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp-~~d~sFDlVv~--- 225 (555)
+.+|||+|||+|..+.+++. ..|+++|+++..+.....+. .+.+. .+.+.+.|...++ +.+++||.|++
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~-~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHA-KRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 46899999999998887775 36889999988886666443 34454 4678888887776 45678999996
Q ss_pred -ccc-cccccc----------------chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 -SRC-RIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 -s~~-~l~~~~----------------d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+.. .+...+ ...++|.++.+.|||||++++++-..
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 221 111111 12447899999999999999988664
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.40 E-value=9.7e-07 Score=83.74 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=66.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..++++ .++++|+++.++...+.++.. ..++.+..+|+..+++++..||.|+++. ..+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~~- 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNL-PYNI- 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECC-Cccc-
Confidence 358999999999999999975 688898888776555433321 3468899999999888877899998653 2322
Q ss_pred cchHHHHHHHHhh--cCCCcEEEEE
Q 008748 234 QRDGILLLELDRL--LRPGGYFVYS 256 (555)
Q Consensus 234 ~d~~~~L~el~Rv--LkPGG~lvis 256 (555)
. ...+..+.+. +.++|.+++.
T Consensus 90 -~-~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 -S-TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred -H-HHHHHHHHhcCCCcceEEEEEE
Confidence 1 2334444332 4578888773
No 137
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=2.4e-06 Score=87.96 Aligned_cols=120 Identities=20% Similarity=0.266 Sum_probs=79.6
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+|||+|||+|.++..++.. .|+++|+++..+.-+..+ |...+. ++.++..|.. -+.. ++||+|+|+---+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N-a~~~~l~~~~~~~~dlf-~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN-AERNGLVRVLVVQSDLF-EPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH-HHHcCCccEEEEeeecc-cccC-CceeEEEeCCCCCCC
Confidence 7999999999999999863 788999999888766644 444453 3344444321 1222 489999985321211
Q ss_pred c------------------------cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-cEEEE
Q 008748 233 L------------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 287 (555)
Q Consensus 233 ~------------------------~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-w~vv~ 287 (555)
. .-...++.++.+.|+|||.+++-.-.. .-+.+.+++.+.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---------q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---------QGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---------cHHHHHHHHHhcCCceEEE
Confidence 1 001347888999999999999855321 2346888999999 55444
Q ss_pred Ee
Q 008748 288 KK 289 (555)
Q Consensus 288 ~~ 289 (555)
..
T Consensus 261 ~~ 262 (280)
T COG2890 261 TL 262 (280)
T ss_pred EE
Confidence 33
No 138
>PRK03612 spermidine synthase; Provisional
Probab=98.40 E-value=2.2e-06 Score=95.57 Aligned_cols=125 Identities=15% Similarity=0.082 Sum_probs=83.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHH--HHH-H----cCCCeEEEEeCCCCC-CCCCCCccE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQ--FAL-E----RGIPSTLGVLGTKRL-PYPSRSFEL 222 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~--~A~-~----rg~~v~~~~~d~~~L-p~~d~sFDl 222 (555)
++++|||||||+|..+..++++ +++.+|+++..+..++.+ +.. . ..+++++...|.... ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4578999999999999888753 577788877766544431 110 0 124678888886542 223468999
Q ss_pred EEecccccccccc-----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 223 AHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 223 Vv~s~~~l~~~~d-----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
|++.. ..+..+. ..++++.+.+.|+|||.+++.....+.. .+.+.++.+.+++.||.
T Consensus 377 Ii~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 377 IIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCE
Confidence 99764 2322221 1358899999999999999876443221 23456778888889993
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.39 E-value=3.9e-06 Score=91.75 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=82.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC----CCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~----Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..|+.. .|+++|+++.++..+..+.......++.+..+|+.. +++.+++||+|++.-.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP- 376 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP- 376 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC-
Confidence 358999999999999999864 688999999988777644433322358899998643 3355678999996532
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
+.. ....+..+.+ ++|++.++++..+. ..-+++..+ .+.||++...+..-
T Consensus 377 --r~g-~~~~~~~l~~-~~~~~ivyvSCnp~--------tlaRDl~~L-~~~gY~l~~i~~~D 426 (443)
T PRK13168 377 --RAG-AAEVMQALAK-LGPKRIVYVSCNPA--------TLARDAGVL-VEAGYRLKRAGMLD 426 (443)
T ss_pred --CcC-hHHHHHHHHh-cCCCeEEEEEeChH--------HhhccHHHH-hhCCcEEEEEEEec
Confidence 221 1345555555 69999999986331 112233333 45689888766544
No 140
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.38 E-value=8.3e-07 Score=102.25 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=86.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCC-CCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~L-p~~d~sFDlVv~s~~~ 229 (555)
+++|||+|||+|.++..++.. .|+++|+++..+..+..+...... .++.+..+|+.+. .-..++||+|++.--.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 368999999999999999863 589999999988877766554432 2578888885432 1114689999984311
Q ss_pred c----------ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 230 I----------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l----------~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+ ....+...++..+.++|+|||.++++.-... .....+.+.+.|+.+...+.
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEEec
Confidence 1 1112335578889999999999988654321 11125667778887765544
No 141
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=4.6e-06 Score=83.60 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=84.6
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+.+|||.|.|+|.++.+|+. ..|+..|+-......|..++..-. +..+.+...|..+.-+++ .||+|+. .
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L-D-- 170 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL-D-- 170 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE-c--
Confidence 46999999999999999994 368888887766655554443322 233777888887776665 8999982 2
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
+++|-.++..+..+|+|||.+++-.|.. +.-++....+++.||..+
T Consensus 171 ---mp~PW~~le~~~~~Lkpgg~~~~y~P~v--------eQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 171 ---LPDPWNVLEHVSDALKPGGVVVVYSPTV--------EQVEKTVEALRERGFVDI 216 (256)
T ss_pred ---CCChHHHHHHHHHHhCCCcEEEEEcCCH--------HHHHHHHHHHHhcCccch
Confidence 4677889999999999999999988875 223344444566688544
No 142
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.8e-06 Score=83.24 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=66.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC-CCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~-~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+..+|||||||+|+.++.|++. .|..++..+.-...+..++..-...++.+.++|.. .+| +...||.|++..+ ..
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~Vtaa-a~ 149 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIVTAA-AP 149 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEEeec-cC
Confidence 3468999999999999999873 68888887765544443433322336888888853 344 3378999997664 33
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.+ =..+.+-|++||++++-.-
T Consensus 150 ~v------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 150 EV------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CC------CHHHHHhcccCCEEEEEEc
Confidence 22 2445678999999998543
No 143
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.28 E-value=8.6e-06 Score=88.71 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=80.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC----CCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~----Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..|++. .|+++|+++.++..+..+.....-.++.+..+|+.. +++.+++||+|+..-.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP- 371 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP- 371 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC-
Confidence 358999999999999999863 689999999888777654443333468888888654 2344567999996432
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
...-...++..+.+ |+|++.++++..+ ..+..-...+.+.||++...+..
T Consensus 372 --r~G~~~~~l~~l~~-l~~~~ivyvsc~p---------~tlard~~~l~~~gy~~~~~~~~ 421 (431)
T TIGR00479 372 --RKGCAAEVLRTIIE-LKPERIVYVSCNP---------ATLARDLEFLCKEGYGITWVQPV 421 (431)
T ss_pred --CCCCCHHHHHHHHh-cCCCEEEEEcCCH---------HHHHHHHHHHHHCCeeEEEEEEe
Confidence 11112446666554 8999988886432 12222233455678877655543
No 144
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.27 E-value=1.6e-06 Score=86.00 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=76.5
Q ss_pred CCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHcC
Q 008748 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERG 200 (555)
Q Consensus 127 ~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~rg 200 (555)
.|.....-..+..-+++.... ....+||+||||.|.....|++. .+.+.|.++.++ +..+++.
T Consensus 49 rFfkdR~wL~~Efpel~~~~~------~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~ 117 (264)
T KOG2361|consen 49 RFFKDRNWLLREFPELLPVDE------KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSS 117 (264)
T ss_pred cccchhHHHHHhhHHhhCccc------cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhcc
Confidence 444444444455556655432 22337999999999888887753 467788877665 3333221
Q ss_pred ----CCeEEEEeCC--C--CCCCCCCCccEEEecccccccccc-hHHHHHHHHhhcCCCcEEEEEcC
Q 008748 201 ----IPSTLGVLGT--K--RLPYPSRSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 201 ----~~v~~~~~d~--~--~Lp~~d~sFDlVv~s~~~l~~~~d-~~~~L~el~RvLkPGG~lvis~P 258 (555)
..+...+.|+ . .-|...+++|.|++.+....-.++ ...++.++.++|||||.+++-+=
T Consensus 118 ~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 118 GYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred ccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 1233334442 2 235667899999998843332222 25589999999999999999653
No 145
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.27 E-value=2e-06 Score=85.81 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=78.4
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC---CCCCCCccEEEeccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL---PYPSRSFELAHCSRC 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L---p~~d~sFDlVv~s~~ 228 (555)
..+||||||.|.+...+|++ .++|+++...-+..+. +.+.+.+. ++.+...|+..+ -+++++.|-|+..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-
Confidence 47999999999999999974 7889999887665555 66677788 899998886443 24566999999777
Q ss_pred ccccccch--------HHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWLQRD--------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~~d~--------~~~L~el~RvLkPGG~lvis~ 257 (555)
.-.|.... ..++..+.++|+|||.|.+.+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 46665432 348999999999999999965
No 146
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.26 E-value=1.3e-05 Score=84.07 Aligned_cols=98 Identities=20% Similarity=0.336 Sum_probs=64.8
Q ss_pred ccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--Ce
Q 008748 130 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PS 203 (555)
Q Consensus 130 ~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v 203 (555)
+++-.|+..+.+++........+.+...++||||||+|.+...|+.+ .++++|+++..+..++.+.+...+. .+
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 35678888888887643221222334578999999999888777653 6889999999888887666554123 35
Q ss_pred EEEEe-CCCCC----CCCCCCccEEEecc
Q 008748 204 TLGVL-GTKRL----PYPSRSFELAHCSR 227 (555)
Q Consensus 204 ~~~~~-d~~~L----p~~d~sFDlVv~s~ 227 (555)
.+... +...+ ..+.+.||+|+|+-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCC
Confidence 55432 32222 12456899999874
No 147
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.24 E-value=3.3e-06 Score=84.75 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=69.1
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-C-----CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p-----~~d~sFDl 222 (555)
+++|||+|||+|+.+..|+. ..++++|+++..+..+..++++ .+. .+.+..+|+... + .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~-~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK-AGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 46899999999987776654 2689999998877666644443 343 478888886442 2 12468999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|++-.. -+....++..+.++|+|||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 986431 1233568999999999999988743
No 148
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.24 E-value=1.1e-05 Score=80.58 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeE-EEEeCCCCC-----CCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRL-----PYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~-~~~~d~~~L-----p~~d~sFDlVv~ 225 (555)
...+|||+|||+|.|+..+++. .|+++|++..++.... .....+. +...++..+ +..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l-----~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL-----RQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-----hcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 3468999999999999999875 6889998887765422 2223322 233333322 212236787776
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC------------CChhh-HHHHHHHHHHHHhcCcEEEEE
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPEN-RRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~------------~~~e~-~~~~~~l~~l~~~~gw~vv~~ 288 (555)
+.. ..+..+.++|+| |.+++-..+.+. .+... .+...++...+.+.||.+...
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 652 258899999999 877765433221 12222 234457777788889987643
No 149
>PLN02672 methionine S-methyltransferase
Probab=98.23 E-value=6e-06 Score=97.95 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----------------CCCeEEEEeCCCCCCC
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----------------GIPSTLGVLGTKRLPY 215 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r----------------g~~v~~~~~d~~~Lp~ 215 (555)
..+|||+|||+|.++..++.. .++++|+++.++..+..+..... ..++.+..+|.....-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 358999999999999998853 69999999999887776654421 1247888888654321
Q ss_pred C-CCCccEEEeccccc-------------ccc--------------------cch----HHHHHHHHhhcCCCcEEEEEc
Q 008748 216 P-SRSFELAHCSRCRI-------------DWL--------------------QRD----GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 216 ~-d~sFDlVv~s~~~l-------------~~~--------------------~d~----~~~L~el~RvLkPGG~lvis~ 257 (555)
. ...||+|+|+---+ .+- .+. ..++.+..++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999842111 010 111 447888889999999999854
Q ss_pred CCCCCCChhhHHHHHHHH-HHHHhcCcEEEE
Q 008748 258 PEAYAHDPENRRIWNAMY-DLLKSMCWKIVS 287 (555)
Q Consensus 258 P~~~~~~~e~~~~~~~l~-~l~~~~gw~vv~ 287 (555)
-. ..-+.+. +++++.||..+.
T Consensus 279 G~---------~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 279 GG---------RPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred Cc---------cHHHHHHHHHHHHCCCCeeE
Confidence 32 1223566 588889987653
No 150
>PHA03412 putative methyltransferase; Provisional
Probab=98.22 E-value=3.2e-06 Score=84.53 Aligned_cols=90 Identities=11% Similarity=0.131 Sum_probs=61.2
Q ss_pred CEEEEECCCCcHHHHHHhcC-------CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-------~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
.+|||+|||+|.++..++.. .|+++|+++.++ +.|++....+.+...|+...++ +++||+|+++--.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-----~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-----KLGKRIVPEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-----HHHHhhccCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 58999999999999887642 466776666554 4555444567888889876665 4689999986321
Q ss_pred cccc-----------cchHHHHHHHHhhcCCCcE
Q 008748 230 IDWL-----------QRDGILLLELDRLLRPGGY 252 (555)
Q Consensus 230 l~~~-----------~d~~~~L~el~RvLkPGG~ 252 (555)
.... .-...++..+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1000 0123478888887777775
No 151
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.21 E-value=1.2e-05 Score=82.21 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=93.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc---------------------------------
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--------------------------------- 199 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r--------------------------------- 199 (555)
+..+||=-|||.|.++..++.+ .+.+.++|..|+-.. ++....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3468999999999999999976 566777777664222 121110
Q ss_pred ---------CCCeEEEEeCCCCCCCCC---CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChh-
Q 008748 200 ---------GIPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE- 266 (555)
Q Consensus 200 ---------g~~v~~~~~d~~~Lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e- 266 (555)
..+.....+|+..+..++ ++||+|++.+ .+.-..+.-.++..+.++|||||++|=.+|--|+..+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 001223344444443333 6899999877 46655666779999999999999999888887765443
Q ss_pred ------hHHHHHHHHHHHHhcCcEEEEEee
Q 008748 267 ------NRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 267 ------~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..-.++++..++++.||+++..+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 222689999999999999987665
No 152
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.18 E-value=1.3e-05 Score=83.73 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=78.2
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCC-CCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~-~d~sFDlVv~s~~~l~~ 232 (555)
.+|||+|||+|.++..++.. .|+++|+++.++..+..+. ...+. ++.+..+|+..+.. ..+.||+|++.-. .
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~-~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP---r 250 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSA-AELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP---R 250 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---C
Confidence 68999999999999999974 6899999998887766443 44444 58899999766532 3357999996531 1
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.. ....+.++...++|++.++++..+.- . -+++..+ .||++...+..
T Consensus 251 ~G-~~~~~~~~l~~~~~~~ivyvsc~p~t--~------~rd~~~l---~~y~~~~~~~~ 297 (315)
T PRK03522 251 RG-IGKELCDYLSQMAPRFILYSSCNAQT--M------AKDLAHL---PGYRIERVQLF 297 (315)
T ss_pred CC-ccHHHHHHHHHcCCCeEEEEECCccc--c------hhHHhhc---cCcEEEEEEEe
Confidence 11 11223344445788888888764421 1 1233333 48888766554
No 153
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.17 E-value=4.1e-06 Score=83.77 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
.+.++|||||+|.|.++..++++ +++..|+ +..++.+.+ ..++.+..+|+. -++|. +|+++..+.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~v- 167 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHV- 167 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESS-
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehh-
Confidence 44578999999999999999864 4455554 223344444 678999999976 56664 999999985
Q ss_pred cccccch--HHHHHHHHhhcCCC--cEEEEEcC
Q 008748 230 IDWLQRD--GILLLELDRLLRPG--GYFVYSSP 258 (555)
Q Consensus 230 l~~~~d~--~~~L~el~RvLkPG--G~lvis~P 258 (555)
+|...+. ..+|+++++.|+|| |.++|..+
T Consensus 168 Lh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 168 LHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 5544433 55899999999999 99999764
No 154
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.17 E-value=3.8e-06 Score=82.13 Aligned_cols=103 Identities=22% Similarity=0.423 Sum_probs=57.1
Q ss_pred CCCEEEEECCCCc----HHHHHHhc--C-------CCccccCChhhhhHHHHHH------------HHHc------C---
Q 008748 155 NIRNVLDVGCGVA----SFGAYLLS--H-------DIIAMSLAPNDVHENQIQF------------ALER------G--- 200 (555)
Q Consensus 155 ~~~~VLDIGCGtG----~~a~~La~--~-------~V~~vdis~~dls~a~i~~------------A~~r------g--- 200 (555)
+.-+|+.+||++| +++..|.+ . .|+|.|+++..+..|..-. ..++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 34444444 1 4556666655554432100 0000 1
Q ss_pred -------CCeEEEEeCCCCCCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEcC
Q 008748 201 -------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 201 -------~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P 258 (555)
..+.|...|+.+.+.+.+.||+|+|.+. +-|.... ..++..+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1357788887663344578999999995 4455443 5599999999999999999653
No 155
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.17 E-value=1.4e-05 Score=86.21 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=70.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCC----CCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP----YPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp----~~d~sFDlVv~s 226 (555)
+.+|||+|||+|.++..++.. .|+++|+++..+..+..+++...- ..+.+..+|+..+- -..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 368999999999998775532 689999999988777655544332 25788888865431 124689999976
Q ss_pred cccccccc----------chHHHHHHHHhhcCCCcEEEEEcC
Q 008748 227 RCRIDWLQ----------RDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 227 ~~~l~~~~----------d~~~~L~el~RvLkPGG~lvis~P 258 (555)
--. +.. +...++..+.++|+|||.+++.+-
T Consensus 301 PP~--f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 301 PPK--FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCC--CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 321 211 123456678899999999998653
No 156
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.16 E-value=2e-05 Score=82.47 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=86.6
Q ss_pred CCEEEEECCCCcHHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEEe-CCCCCCCCCCCccEEEecc----c
Q 008748 156 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL-GTKRLPYPSRSFELAHCSR----C 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La--~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~-d~~~Lp~~d~sFDlVv~s~----~ 228 (555)
+..|||==||||+++.... ...++|.|++..++..+..++-.-+-....+... |+..+|+++++||.|++-- .
T Consensus 198 G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrs 277 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRS 277 (347)
T ss_pred CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcc
Confidence 4589999999999886643 5678888888888877666554333234444444 9999999988999999821 0
Q ss_pred -cccc--ccc-hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 229 -RIDW--LQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 -~l~~--~~d-~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
...- .+. ...+|..+.++|++||++++..|.. ....+.+.+|+++..-.+
T Consensus 278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------------~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 278 TKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD-------------PRHELEELGFKVLGRFTM 331 (347)
T ss_pred cccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------chhhHhhcCceEEEEEEE
Confidence 0110 011 2568999999999999999998832 123467789998865554
No 157
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.15 E-value=1.9e-05 Score=77.41 Aligned_cols=123 Identities=11% Similarity=-0.006 Sum_probs=76.6
Q ss_pred CCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHH-hc--CCCccccCChhhhhHHHHHHHHHcCCCe
Q 008748 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL-LS--HDIIAMSLAPNDVHENQIQFALERGIPS 203 (555)
Q Consensus 127 ~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~L-a~--~~V~~vdis~~dls~a~i~~A~~rg~~v 203 (555)
.+.+..+...+.+.+.+... ....+|||+|||+|.++..+ +. ..|+++|+++..+..+..+.......++
T Consensus 32 ~~Rp~~d~v~e~l~~~l~~~-------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v 104 (199)
T PRK10909 32 GLRPTTDRVRETLFNWLAPV-------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNA 104 (199)
T ss_pred CcCcCCHHHHHHHHHHHhhh-------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcE
Confidence 34566666666565555311 12358999999999999864 43 2688999988776655544333222357
Q ss_pred EEEEeCCCC-CCCCCCCccEEEecccccccccc-hHHHHHHHHh--hcCCCcEEEEEcCC
Q 008748 204 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 259 (555)
Q Consensus 204 ~~~~~d~~~-Lp~~d~sFDlVv~s~~~l~~~~d-~~~~L~el~R--vLkPGG~lvis~P~ 259 (555)
.+..+|+.. ++...++||+|++.-- |... ...++..+.. +|+|+|.+++..+.
T Consensus 105 ~~~~~D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 105 RVVNTNALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEEEchHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 888888643 3323457999996542 2222 2334555544 47999999987654
No 158
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.10 E-value=2e-05 Score=68.03 Aligned_cols=99 Identities=29% Similarity=0.435 Sum_probs=68.4
Q ss_pred EEEECCCCcHHH--HHHhcC--CCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCC--CCCCC-CCccEEEeccccc
Q 008748 159 VLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR--LPYPS-RSFELAHCSRCRI 230 (555)
Q Consensus 159 VLDIGCGtG~~a--~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~--Lp~~d-~sFDlVv~s~~~l 230 (555)
+||+|||+|... ..+... .++++|++..++......... .... +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999843 333332 466778877766552222111 2222 5677777665 78876 489999 666555
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5555 6779999999999999999987654
No 159
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.08 E-value=1.1e-05 Score=83.26 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=65.6
Q ss_pred CEEEEECCCCc----HHHHHHhcC--------CCccccCChhhhhHHHHHH----H--------HHc----------C--
Q 008748 157 RNVLDVGCGVA----SFGAYLLSH--------DIIAMSLAPNDVHENQIQF----A--------LER----------G-- 200 (555)
Q Consensus 157 ~~VLDIGCGtG----~~a~~La~~--------~V~~vdis~~dls~a~i~~----A--------~~r----------g-- 200 (555)
-+|+..||.|| +++..|.+. .|+|+|++...+..|+.-. . .++ +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 344444431 4667777766665443210 0 000 0
Q ss_pred -------CCeEEEEeCCCCCCCC-CCCccEEEeccccccccc-chHHHHHHHHhhcCCCcEEEEEc
Q 008748 201 -------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 201 -------~~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~~~~-d~~~~L~el~RvLkPGG~lvis~ 257 (555)
..+.|...|+...+++ .+.||+|+|.+..+++.. ....++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1246777776654443 578999999885444432 23669999999999999988854
No 160
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.08 E-value=1.5e-05 Score=79.12 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=80.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc------------CCCeEEEEeCCCCCCCCC-CCc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRLPYPS-RSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r------------g~~v~~~~~d~~~Lp~~d-~sF 220 (555)
..+||..|||.|.-...|+++ .|+|+|+++..+..+..+...+. ...+.+.++|+-.++... ++|
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 358999999999999999986 67777777766544321111100 113578888987776433 579
Q ss_pred cEEEeccccccccc-chHHHHHHHHhhcCCCcEEEEEc---CCCC-CCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 221 ELAHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFVYSS---PEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 221 DlVv~s~~~l~~~~-d~~~~L~el~RvLkPGG~lvis~---P~~~-~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
|+|+=..+..-..+ .-.++.+.+.++|+|||.+++.+ +... .-.+.. -.-.++.+++. .+|++...+.
T Consensus 118 D~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~-v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 118 DLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS-VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----HHHHHHHHT-TTEEEEEEEE
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC-CCHHHHHHHhc-CCcEEEEEec
Confidence 99995443222222 23669999999999999944432 1110 001111 12246777777 7888776655
No 161
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.08 E-value=1.4e-05 Score=78.58 Aligned_cols=119 Identities=15% Similarity=0.235 Sum_probs=81.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC---CCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~---~d~sFDlVv~s~~~l~ 231 (555)
.-++|||||=+......-... .|+.+|+.+.. -.+.+.|+...|. +++.||+|+||. +++
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SL-VLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSL-VLN 115 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEE-EEe
Confidence 368999999865433322221 45666665422 1245667666665 367899999998 799
Q ss_pred cccch---HHHHHHHHhhcCCCcE-----EEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WLQRD---GILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~~d~---~~~L~el~RvLkPGG~-----lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|++++ ...++.+.+.|+|+|. |+++.|.+-... .-.-..+.+..+++.+||..+..+..
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~N-SRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTN-SRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhc-ccccCHHHHHHHHHhCCcEEEEEEec
Confidence 99988 4489999999999999 999988752100 00012347889999999998876543
No 162
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.07 E-value=1.7e-05 Score=88.24 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=84.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC--CCCCCCccEEEecc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSR 227 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L--p~~d~sFDlVv~s~ 227 (555)
....+||||||.|.++..+|.. .++|+|+...-+..+.. .+.+.+. ++.+...|+..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~-~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK-LAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4568999999999999999863 78999998876655553 3344444 556665565322 26788999999777
Q ss_pred cccccccch--------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-cEEE
Q 008748 228 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIV 286 (555)
Q Consensus 228 ~~l~~~~d~--------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-w~vv 286 (555)
.-.|.... ..++..+.++|+|||.+.+.+-. + ..+..+...+++.+ |+..
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~------~--~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI------E--NYFYEAIELIQQNGNFEII 484 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC------H--HHHHHHHHHHHhCCCeEec
Confidence 46665322 44899999999999999996532 1 23344455555544 7654
No 163
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.07 E-value=2.5e-05 Score=79.84 Aligned_cols=135 Identities=19% Similarity=0.302 Sum_probs=92.5
Q ss_pred CCCCCCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHcCCC--eEEEEeCCCCC---CCCCCCc
Q 008748 152 NGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRL---PYPSRSF 220 (555)
Q Consensus 152 ~~~~~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~~L---p~~d~sF 220 (555)
..+.+-+||||.||.|.+....... .|.-.|+++..+...+ +.++++|.. ++|..+|+.+. .--+-..
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 3456679999999999776655432 4666788887776555 555666654 38888885432 2123357
Q ss_pred cEEEecccccccccch---HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhH---------HHH-------HHHHHHHHhc
Q 008748 221 ELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEAYAHDPENR---------RIW-------NAMYDLLKSM 281 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~---~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~---------~~~-------~~l~~l~~~~ 281 (555)
++++.+. +++.++|- ...+..+.++|.|||+++.+..+.....+.-. +.| .+|.++++.+
T Consensus 211 ~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 211 TLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred CEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence 9999888 68887774 34788999999999999998855422221100 123 4899999999
Q ss_pred CcEEEEE
Q 008748 282 CWKIVSK 288 (555)
Q Consensus 282 gw~vv~~ 288 (555)
||+.+..
T Consensus 290 GF~K~~q 296 (311)
T PF12147_consen 290 GFEKIDQ 296 (311)
T ss_pred CCchhhh
Confidence 9976543
No 164
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.04 E-value=1.2e-05 Score=77.05 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=61.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC----CCeEEEEeCCCC-C--C-CCCCCccE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKR-L--P-YPSRSFEL 222 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg----~~v~~~~~d~~~-L--p-~~d~sFDl 222 (555)
...+|||+|||+|..+..++.. .|+..|..+ -+ +.....++..+ ..+.+...+-.+ . . ...+.||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4469999999999777776653 677888776 33 22223333222 345555555322 1 1 23468999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
|+++.+ +......+.++.-+.++|+++|.++++.+..
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999984 6555666889999999999999988877653
No 165
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.04 E-value=2.9e-05 Score=78.45 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=81.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCC---CCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYP---SRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~---d~sFDlVv~ 225 (555)
+.+|||.|.|+|+++..|+.. .|...|+...-...++.++.. .+. .+.+...|...-.|. ++.||.|+.
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccEEEE
Confidence 469999999999999999852 677788877666556555433 343 578888887543332 367999882
Q ss_pred cccccccccchHHHHHHHHhhc-CCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 226 SRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvL-kPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
. +++|-.++..+.++| ||||++++-.|.. +.-.+....+++.||..+..
T Consensus 120 -D-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i--------eQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 120 -D-----LPDPWEAIPHAKRALKKPGGRICCFSPCI--------EQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp -E-----SSSGGGGHHHHHHHE-EEEEEEEEEESSH--------HHHHHHHHHHHHTTEEEEEE
T ss_pred -e-----CCCHHHHHHHHHHHHhcCCceEEEECCCH--------HHHHHHHHHHHHCCCeeeEE
Confidence 2 356667899999999 8999999988874 33345556677789976643
No 166
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.04 E-value=1e-05 Score=78.52 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=89.0
Q ss_pred hcCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHH
Q 008748 114 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI 193 (555)
Q Consensus 114 ~~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i 193 (555)
...+.-.|.+.|.+|-...+++.+.+. ... -.++..+.++||+|+|.|.++..++.. .-++.+.++|..++
T Consensus 77 s~TdING~lgrGsMFifSe~QF~klL~----i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr 147 (288)
T KOG3987|consen 77 SQTDINGFLGRGSMFIFSEEQFRKLLV----IGG--PAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMR 147 (288)
T ss_pred hhhccccccccCceEEecHHHHHHHHh----cCC--CccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHH
Confidence 445778889999999888776654443 221 234455679999999999999999875 22334445566666
Q ss_pred HHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCC-CcEEEEEc
Q 008748 194 QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYSS 257 (555)
Q Consensus 194 ~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkP-GG~lvis~ 257 (555)
....+.+-++. ...+..-.+-+||+|.|.+ ++.-..++..+|..+.-+|+| .|.++++.
T Consensus 148 ~rL~kk~ynVl----~~~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 148 DRLKKKNYNVL----TEIEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHhhcCCcee----eehhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 65555554432 1111111234599999988 577777888999999999999 89888743
No 167
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=2.6e-05 Score=77.48 Aligned_cols=102 Identities=18% Similarity=0.409 Sum_probs=63.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHH--Hc--CC-------------------------
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFAL--ER--GI------------------------- 201 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~--~r--g~------------------------- 201 (555)
.+..+|||||-.|.++..+++ +.|+|+||++.-+..|..+.-. .. ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 346799999999999999986 4799999988777555432100 00 00
Q ss_pred ------CeEEE----EeC-CCCCCCCCCCccEEEeccc----ccccccch-HHHHHHHHhhcCCCcEEEEE
Q 008748 202 ------PSTLG----VLG-TKRLPYPSRSFELAHCSRC----RIDWLQRD-GILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 202 ------~v~~~----~~d-~~~Lp~~d~sFDlVv~s~~----~l~~~~d~-~~~L~el~RvLkPGG~lvis 256 (555)
++.+. +.+ ..-+.+....||+|.|... .|+|.++. ..+++.+.++|.|||+|++-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000 011 1112234467999998531 13333332 55999999999999999973
No 168
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.01 E-value=5.1e-05 Score=81.31 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=79.0
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC-CCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||+|||+|.++..++.. .|+++|+++..+..+..+. ...+. ++.+..+|+..+. ...++||+|++.-- +
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSA-QMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHH-HHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 58999999999999999864 7889999998886666443 33343 6788888875432 11246999986531 2
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
..-...++..+. .++|++.++++..+. ..-+++..+ .||++...+..-
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~p~--------TlaRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCNAQ--------TMAKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeCHH--------HHHHHHHHh---cCceEEEEEEec
Confidence 211234555554 479999999876431 122344444 589887665543
No 169
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.97 E-value=2.3e-06 Score=71.47 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=60.2
Q ss_pred eeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccc---hhcccccCCCCCCCccchhhccccccccccCCC
Q 008748 404 MDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIG---TVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 479 (555)
Q Consensus 404 ~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g---~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c 479 (555)
+|++||.|-+++.|.+.+. .+|+-++.. ..+...-++.--. ..+.=-+.++.-+.+||++++.++|..+ -
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS----S
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec----c
Confidence 6999999999999987722 233334432 3344433333211 2222244555556899999999999854 3
Q ss_pred ChhhhhhhhcccccCCceEEE
Q 008748 480 SFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 480 ~~~~~~~e~drilrp~g~~i~ 500 (555)
+...++-||-|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 588999999999999999986
No 170
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.95 E-value=3.5e-05 Score=76.42 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCC-eEEEE-eCCC-CCC-CCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGV-LGTK-RLP-YPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~-~d~~-~Lp-~~d~sFDlVv~ 225 (555)
++++||+||.+.|+.+.+|+.. .++++|+++.....++.++++..-.+ +.+.. +|.. .+. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 3468999999999999999853 58899999988877776665433222 55555 3532 222 44689999994
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
-. .-.+...++..+.++|+|||.+++-
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 33 2234467999999999999999973
No 171
>PLN02476 O-methyltransferase
Probab=97.94 E-value=2.6e-05 Score=80.06 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=69.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CC-C----CCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y----PSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp-~----~d~sFDl 222 (555)
+++|||||+|+|+.+.+++.. .++++|.++.....+..++. +.|. .+.+..+++.. |+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~-~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE-LAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 468999999999999998852 57889999877766664443 3444 57888888533 22 1 1368999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
|+.-.. -.+...++..+.++|+|||.+++-
T Consensus 198 VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDAD----KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 995432 233456889999999999999873
No 172
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.88 E-value=2.3e-05 Score=83.42 Aligned_cols=97 Identities=19% Similarity=0.309 Sum_probs=78.7
Q ss_pred EEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 158 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
.++|+|||.|....+++. .++++++.++..+..+........ .....+...++...|+++++||.+.+.. +..|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld-~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE-VVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe-ecccC
Confidence 699999999988888774 478888888877766654433222 1223457778999999999999999888 68899
Q ss_pred cchHHHHHHHHhhcCCCcEEEE
Q 008748 234 QRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvi 255 (555)
++...++.|++|+++|||+++.
T Consensus 192 ~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 192 PDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CcHHHHHHHHhcccCCCceEEe
Confidence 9999999999999999999997
No 173
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.87 E-value=3.3e-05 Score=76.10 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=68.7
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CC-----CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp-----~~d~sFDl 222 (555)
+++||+|||++|+.+.+|+. ..|+++|+++.....++ ++.++.|. .+.+..+|+.. ++ .+.++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 46899999999999999985 37889999887665554 33344443 57888888533 22 12368999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|+.-.. -.+...++..+.++|+|||.+++-.
T Consensus 125 VFiDa~----K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDAD----KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEST----GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEccc----ccchhhHHHHHhhhccCCeEEEEcc
Confidence 995432 2334567888999999999999854
No 174
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=0.0001 Score=74.48 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC--eEE
Q 008748 132 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--STL 205 (555)
Q Consensus 132 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~--v~~ 205 (555)
.+.+.+.+.+.+..... .+...|||+|||+|.++..|+. ..++++|++..++.-+..+. ...+.. +.+
T Consensus 130 TEE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~-qr~~l~g~i~v 203 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENA-QRLKLSGRIEV 203 (328)
T ss_pred HHHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHH-HHHhhcCceEE
Confidence 35566666665543221 2234799999999998888775 37888888887776655333 332222 222
Q ss_pred EE----eC-CCCCCCCCCCccEEEecccccccc-------------------------cchHHHHHHHHhhcCCCcEEEE
Q 008748 206 GV----LG-TKRLPYPSRSFELAHCSRCRIDWL-------------------------QRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 206 ~~----~d-~~~Lp~~d~sFDlVv~s~~~l~~~-------------------------~d~~~~L~el~RvLkPGG~lvi 255 (555)
.. .| ....+...+.+|+++|+--.+... .....++.-+.|.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 22 22 233445678999999853211110 0112256677899999999998
Q ss_pred EcC
Q 008748 256 SSP 258 (555)
Q Consensus 256 s~P 258 (555)
..-
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 664
No 175
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.83 E-value=2.5e-05 Score=77.28 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=85.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC---CCeEEEEeCCCCC--CCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRL--PYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg---~~v~~~~~d~~~L--p~~d~sFDlVv~s 226 (555)
.+.+|||...|-|+.+...+++ .|..++.++.-+.-+.++= -+++ ..+.++.+|+.++ .|+|.+||+|+--
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 3569999999999999888765 5667777665553332210 0111 2357788886544 3788999999842
Q ss_pred ccccccccc--hHHHHHHHHhhcCCCcEEEEEc--CCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 227 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSS--PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 227 ~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~--P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
--.+..... -+.+.+|++|+|||||.++--+ |....+ .......+.+.+++.||+++....
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr---G~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR---GLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc---cCChhHHHHHHHHhcCceeeeeeh
Confidence 211222221 2568999999999999998544 432111 123456778889999999776543
No 176
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.82 E-value=2.3e-05 Score=81.79 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=66.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
.++|||||||+|.++..-|++ .|.+++.+... .-+.+.++..+.. +++..+.++++.+|....|+|++-..
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 468999999999988887763 78888887644 4444566666554 56666667666666678999997421
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lv 254 (555)
.+-+..-...+|-.=.+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 11111122445666678999999887
No 177
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.80 E-value=1.2e-05 Score=81.60 Aligned_cols=100 Identities=27% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d 235 (555)
...+||+|||.|-++..--...+.+.|++ ...+..++..+.. ...++|+..+|+.+.+||.+++.. ++||...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c-----~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLC-----TGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLST 118 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchh-----hhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhh
Confidence 35799999999976543222234455544 3333444433332 677889999999999999999776 6777744
Q ss_pred h---HHHHHHHHhhcCCCcEEEEEcCCCCC
Q 008748 236 D---GILLLELDRLLRPGGYFVYSSPEAYA 262 (555)
Q Consensus 236 ~---~~~L~el~RvLkPGG~lvis~P~~~~ 262 (555)
. ..+++|+.|+|||||...+.......
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 3 55999999999999998887655433
No 178
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.77 E-value=6.8e-05 Score=76.23 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=51.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
..+|||||||+|.++..|++. .++++|+++.++......+.. ..++.+..+|+..++++ .||.|+++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch--hceEEEEcC
Confidence 468999999999999999975 688888888776555433221 34688899999888775 489998754
No 179
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.76 E-value=5.4e-05 Score=77.56 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=51.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
..+|||||||+|.++..|+++ .++++|+++.++..+..+.. ..++.+..+|+..+++++-.+|.|+++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEe
Confidence 358999999999999999875 68888888877755543221 257889999988888764335788754
No 180
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.73 E-value=0.00013 Score=70.90 Aligned_cols=153 Identities=21% Similarity=0.262 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccC-CCceEEEecccCCC-Cchh----HHhhccc--cchhc
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLK----IIYDRGL--IGTVH 449 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l~----~i~~rgl--~g~~~ 449 (555)
+.|++++-.-.... ..+.. =..|+|++||.|.++.+|.. .|- ..|+-++.. .-+. .+-+.|+ |-+++
T Consensus 27 ~~~~~~~~d~l~l~-~~l~~--g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIA-PYLPG--GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHH-hhcCC--CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 38888874322212 22333 25799999999998877653 232 356666654 3232 2333444 44455
Q ss_pred ccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccceecccccc
Q 008748 450 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 529 (555)
Q Consensus 450 ~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~ 529 (555)
.-.+.+.. ..+||+|-+..+ ..+.+++-++-|+|||||.+++-+......++.++++.+.|.+.... .-|
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 171 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVI-ELT 171 (187)
T ss_pred ccHhhCCC-CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeE-EEe
Confidence 55555555 679999987542 34788999999999999999999999999999999999999953211 111
Q ss_pred cccCCCCCceEEEEEec
Q 008748 530 IDALSSSEERVLIAKKK 546 (555)
Q Consensus 530 ~~~~~~~~~~~l~~~k~ 546 (555)
-..+ .++..+.|.+|+
T Consensus 172 ~~~~-~~~~~~~~~~~~ 187 (187)
T PRK00107 172 LPGL-DGERHLVIIRKK 187 (187)
T ss_pred cCCC-CCcEEEEEEecC
Confidence 1112 245567777774
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.70 E-value=5.5e-05 Score=82.80 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=62.3
Q ss_pred CCEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHc--CCCeEEEEeCCCCCCCCCCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~r--g~~v~~~~~d~~~Lp~~d~sFDlVv~ 225 (555)
...|||||||+|.++...++ .+|.+++-++......+ +..... +..++++.+|++++..+ ...|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 46899999999988755443 26888888876553333 222223 35799999999999877 47999996
Q ss_pred cccccccccc--hHHHHHHHHhhcCCCcEEE
Q 008748 226 SRCRIDWLQR--DGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 226 s~~~l~~~~d--~~~~L~el~RvLkPGG~lv 254 (555)
--. =.+..+ -...|....|.|||||.++
T Consensus 265 ElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 321 112221 1347888899999999887
No 182
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00029 Score=68.88 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=61.5
Q ss_pred CEEEEECCCCcHHHHHHhc---C---CCccccCChhhhhHH--HHHHHH------H--cCCCeEEEEeCCCCCCCCCCCc
Q 008748 157 RNVLDVGCGVASFGAYLLS---H---DIIAMSLAPNDVHEN--QIQFAL------E--RGIPSTLGVLGTKRLPYPSRSF 220 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~---~---~V~~vdis~~dls~a--~i~~A~------~--rg~~v~~~~~d~~~Lp~~d~sF 220 (555)
.+.||+|.|+|+++..++. . ...|+|..+.-+..+ .+..-- . ...+..++++|.....-+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 5799999999999887763 1 225565544322211 111100 0 0124678889987777677889
Q ss_pred cEEEecccccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 221 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
|.|||...+ ....+++...|++||.+++-
T Consensus 164 DaIhvGAaa-------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 164 DAIHVGAAA-------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ceEEEccCc-------cccHHHHHHhhccCCeEEEe
Confidence 999987532 23678888899999999983
No 183
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.67 E-value=0.00016 Score=73.94 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCc----HHHHHHhcC---------CCccccCChhhhhHHHHHH----HHHcC--------------C--
Q 008748 155 NIRNVLDVGCGVA----SFGAYLLSH---------DIIAMSLAPNDVHENQIQF----ALERG--------------I-- 201 (555)
Q Consensus 155 ~~~~VLDIGCGtG----~~a~~La~~---------~V~~vdis~~dls~a~i~~----A~~rg--------------~-- 201 (555)
+.-+|+-+||+|| +++..|.+. +|+|.|++...+..|..-. ...++ .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 344444432 4566666665554443210 00010 0
Q ss_pred ---------CeEEEEeCCCCCCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 202 ---------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 202 ---------~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
.+.|...|+..-++..+.||+|+|-+. +-|.+.+ ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV-LIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV-LIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcce-EEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 134555554443423467999999995 5555444 559999999999999999944
No 184
>PLN02823 spermine synthase
Probab=97.67 E-value=0.00033 Score=74.00 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCC-CCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~-Lp~~d~sFDlVv~ 225 (555)
.+++||.||+|.|..+..+++. .++.+|+++..+..+...+... ...++.+...|... +....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999999988763 5777888777665444332211 13567888888543 2334578999996
Q ss_pred ccccccccc------chHHHHH-HHHhhcCCCcEEEEEc
Q 008748 226 SRCRIDWLQ------RDGILLL-ELDRLLRPGGYFVYSS 257 (555)
Q Consensus 226 s~~~l~~~~------d~~~~L~-el~RvLkPGG~lvis~ 257 (555)
-. .-.... ....+++ .+.+.|+|||.+++-.
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 42 111100 1235777 8999999999998743
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.66 E-value=0.00064 Score=65.47 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCEEEEECCCCcHHHHHHhc--CCC-----------ccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCc
Q 008748 156 IRNVLDVGCGVASFGAYLLS--HDI-----------IAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~~V-----------~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sF 220 (555)
...|||--||+|.+....+. ..+ .|.|+++.++..+..+. ...+. .+.+...|+..+++.++++
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~-~~ag~~~~i~~~~~D~~~l~~~~~~~ 107 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL-KAAGVEDYIDFIQWDARELPLPDGSV 107 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH-HHTT-CGGEEEEE--GGGGGGTTSBS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH-HhcccCCceEEEecchhhcccccCCC
Confidence 45899999999998866542 333 48999998887776554 33333 4788889999999777899
Q ss_pred cEEEeccccccccc------ch----HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 221 ELAHCSRCRIDWLQ------RD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 221 DlVv~s~~~l~~~~------d~----~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
|.|++.- .|-. +. ..+++++.|+|++...++++... .+++.++..+|.......
T Consensus 108 d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~-------------~~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 108 DAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR-------------ELEKALGLKGWRKRKLYN 171 (179)
T ss_dssp CEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC-------------CHHHHHTSTTSEEEEEEE
T ss_pred CEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH-------------HHHHHhcchhhceEEEEE
Confidence 9999752 2221 11 34789999999994444443322 356667777887765544
No 186
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00011 Score=70.73 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=75.7
Q ss_pred CCCEEEEECCCCcHHHHHH--hc-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYL--LS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~L--a~-~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..++|+|+|||||.++... +. ..|+++|+++..+..+. +.+.+.+..+.+.++|+.++. +.||.|+.+--.=.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 3468999999999776544 44 48999999998875555 455556667999999988776 56888886531111
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 232 WLQ-RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 232 ~~~-d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
+.. ....++....++- -++.+.... ...+-+++.++..|+.+....
T Consensus 121 ~~rhaDr~Fl~~Ale~s----~vVYsiH~a--------~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 121 QRRHADRPFLLKALEIS----DVVYSIHKA--------GSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccccCCHHHHHHHHHhh----heEEEeecc--------ccHHHHHHHHHhcCCeEEEEE
Confidence 111 1133555555553 334333222 123456778899998776554
No 187
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.63 E-value=9.4e-06 Score=74.81 Aligned_cols=96 Identities=24% Similarity=0.431 Sum_probs=66.6
Q ss_pred CcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCCCCccchhhcccccccccc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
..-.+|||++||.|.|+..|.+.+. .|+-++.. ..+.. +-....-++=.+. ..-+.+||+|.+.++|..+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhcc-
Confidence 3455899999999999999987655 45555543 23322 2121221211111 12357999999999999654
Q ss_pred CCCChhhhhhhhcccccCCceEEEecch
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4889999999999999999998764
No 188
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.63 E-value=0.00033 Score=70.92 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=49.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCcc---EEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFE---LAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFD---lVv~s 226 (555)
..+|||||||+|.++..|+++ .++++|+++.++..+..... ...++.+..+|+..++++ .|| +|+++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 468999999999999999874 68888888876654442221 135678888998888875 466 66644
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.58 E-value=0.00011 Score=74.34 Aligned_cols=96 Identities=13% Similarity=0.037 Sum_probs=66.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCC-CCC------CCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPY------PSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~-Lp~------~d~sFDl 222 (555)
+++||+||+++|+.+.+|+.. .++++|.++.....+...+.... ...+.+..+++.+ |+- ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 468999999999999888752 68889988866555554443322 2457888887533 221 1368999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
|+.-.. -.....++..+.+.|+|||.+++
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcCCCeEEEE
Confidence 995432 22334578888899999999886
No 190
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0013 Score=63.17 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=81.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
+..+||||||+|..+..|++. -..++|+++... .+..+.|+.++..+..+..|...---+ ++.|+++.+--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~l~~-~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSGLRN-ESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhhhcc-CCccEEEECCCcC
Confidence 467999999999999998874 256789999875 445566776666777777775332222 78888886421
Q ss_pred ------------ccccc--cc----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 229 ------------RIDWL--QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 229 ------------~l~~~--~d----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
...|. .+ .++++..+..+|.|.|.|++..-... .-+++.++++..||....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------KPKEILKILEKKGYGVRI 190 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------CHHHHHHHHhhcccceeE
Confidence 11121 11 13477788889999999998764431 123566688888886553
No 191
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.48 E-value=0.00066 Score=72.48 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=74.6
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC-C-CC--------------C
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YP--------------S 217 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L-p-~~--------------d 217 (555)
.+|||++||+|.++..|++. .|+++|+++.++..+..+. ...+. ++.+..+|+..+ + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNI-AANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999998863 7999999999887666444 33344 678888886442 1 10 1
Q ss_pred CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
..||+|+.--- ...-...++..+. +|++.++++..+. ..-+++..+. + ||++...+..-
T Consensus 287 ~~~D~v~lDPP---R~G~~~~~l~~l~---~~~~ivyvSC~p~--------tlarDl~~L~-~-gY~l~~v~~~D 345 (362)
T PRK05031 287 YNFSTIFVDPP---RAGLDDETLKLVQ---AYERILYISCNPE--------TLCENLETLS-Q-THKVERFALFD 345 (362)
T ss_pred CCCCEEEECCC---CCCCcHHHHHHHH---ccCCEEEEEeCHH--------HHHHHHHHHc-C-CcEEEEEEEcc
Confidence 25899985321 1111133444444 4788888875331 1223455554 3 89887665543
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.48 E-value=0.00033 Score=72.74 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=52.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
..+|||||||+|.++..|++. .++++|+++.++..+..+++... ..++.+..+|+...+++ .||+|+++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEec
Confidence 358999999999999999864 68999999888766664443322 34688999998766654 68988854
No 193
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.47 E-value=0.00046 Score=65.29 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=74.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-----CCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-----~~d~sFDlVv~s~~~ 229 (555)
.+.-||++|.|||-++..++.+.+---++...+.+......-.+..+.+.++.+|+..+. +.+..||.|+|.--.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 345799999999999999998744444444444555555555666777788888876554 556779999987655
Q ss_pred cccccch-HHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRD-GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~-~~~L~el~RvLkPGG~lvis~ 257 (555)
+.+.... -++++++...|++||-++..+
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 5544333 448999999999999998754
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.42 E-value=0.0014 Score=63.61 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=76.3
Q ss_pred EEEEECCCCcHHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 158 NVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La----~~~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+++|||+|-|.=+..|+ +.+++-+|-...-++ .....+.+.+.. +.+....++. +....+||+|++-. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA-v--- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA-V--- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES-S---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh-h---
Confidence 79999999997665554 345777777665432 122334455655 7787777777 44557899999543 2
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
.....++.-+...|++||.+++.--. ...++..+.....+..+++......
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~KG~------~~~~El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYKGP------DAEEELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEESS--------HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEcCC------ChHHHHHHHHhHHHHhCCEEeeecc
Confidence 23467889999999999998874322 1123445666667777777665443
No 195
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0012 Score=68.26 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----CCCeEEEEeCCCCC-CCCCCCccEEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRL-PYPSRSFELAH 224 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r----g~~v~~~~~d~~~L-p~~d~sFDlVv 224 (555)
+.+++||=||-|.|..++.+++. +++.+||++.-+.-+...+..-. .+++.+...|...+ .-..++||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34479999999999999999875 57777777655433332111111 24567777775433 22224899999
Q ss_pred eccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCCCCCC
Q 008748 225 CSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 264 (555)
Q Consensus 225 ~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~~~~~ 264 (555)
+-. .-.-.+ ....+++.++|.|+++|.++.-.-..+..+
T Consensus 155 ~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 155 VDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred EcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 532 111001 126699999999999999998754444343
No 196
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.40 E-value=0.00032 Score=75.42 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=69.7
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||++||+|.++..++.. .|+++|+++..+..+..+.....-....+...|+..+....+.||+|+..- +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP----~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP----F 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----C
Confidence 47999999999999998742 588999998887666644433333345677778655322135799999532 2
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..+..++....+.+++||++.++..+
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 33456788878889999999998643
No 197
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.38 E-value=0.00033 Score=70.48 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=65.0
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhccc-cchhcccccCCCCCCCccchhhcccccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rgl-~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
+......+|+|++||.|.++..|.... -.|+-+|- +.-|...-+++- +.....=.|.++..+.+||+|-++..+.
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ 114 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh
Confidence 334456789999999999988886542 13444443 244444444431 1111111244554456999998776554
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+. -+...+|-||-|+|+|||.+++..
T Consensus 115 -~~---~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 115 -WC---GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred -hc---CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 21 247889999999999999999863
No 198
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.35 E-value=0.00039 Score=68.22 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=75.5
Q ss_pred hcCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc--C--CCccccCChhhhh
Q 008748 114 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVH 189 (555)
Q Consensus 114 ~~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~--~V~~vdis~~dls 189 (555)
..|-.+.+.-....|.++-..-...+.+++. +..+|||+-||.|.|+..++. . .|.++|++|..+.
T Consensus 70 E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~----------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~ 139 (200)
T PF02475_consen 70 ENGIRFKVDLSKVYFSPRLSTERRRIANLVK----------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE 139 (200)
T ss_dssp ETTEEEEEETTTS---GGGHHHHHHHHTC------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH
T ss_pred eCCEEEEEccceEEEccccHHHHHHHHhcCC----------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH
Confidence 4455566655566666665544445554432 246899999999999999986 2 6999999998775
Q ss_pred HHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEE
Q 008748 190 ENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 190 ~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lv 254 (555)
....+....+- ..+....+|...+.. .+.||-|++.. . .....+|..+.+++++||.+-
T Consensus 140 ~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 140 YLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--P---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE----T---SSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--h---HHHHHHHHHHHHHhcCCcEEE
Confidence 55544433332 236678888877755 68899999653 2 222347889999999999874
No 199
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.31 E-value=0.001 Score=73.37 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC-CCCCCccEEE---
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAH--- 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp-~~d~sFDlVv--- 224 (555)
.+.+|||++||.|.=+.++++. .+++.|++..-+...+. ...+.|. ++.+...|...+. ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~-nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHA-NISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 3468999999999888877752 57788887765544432 3333354 4566667766553 2236799999
Q ss_pred -ecccc-c--------ccccc--------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 -CSRCR-I--------DWLQR--------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 -~s~~~-l--------~~~~d--------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
||... + .|... ...+|..+.+.|||||+++.++-..
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 55321 1 11111 1347889999999999999988653
No 200
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.30 E-value=0.0024 Score=65.63 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEE--EEeC--CCCCCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLG--TKRLPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~--~~~d--~~~Lp~~d~sFDlVv~ 225 (555)
.+++|||+|||+|..+-.+.+ ..++.+|.++.++..+. ..+.. ...... .... ....++. ..|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~--~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK-RLLRA-GPNNRNAEWRRVLYRDFLPFP--PDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH-HHHhc-ccccccchhhhhhhcccccCC--CCcEEEE
Confidence 457999999999975544443 25677777776654333 22221 211111 0111 1122332 3499999
Q ss_pred cccccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 226 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 226 s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
++. |.-+.+. ..+++.+-+.+.+ +++|+.|+. +...+...++.+.+.+.|+.++.-
T Consensus 109 s~~-L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt----~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 109 SYV-LNELPSAARAELVRSLWNKTAP--VLVLVEPGT----PAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred ehh-hhcCCchHHHHHHHHHHHhccC--cEEEEcCCC----hHHHHHHHHHHHHHhhCCCceECC
Confidence 995 4444442 2255555555544 999998874 344455567777777778777643
No 201
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.30 E-value=0.0014 Score=69.75 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=72.5
Q ss_pred EEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC-C-------C---C-----CC
Q 008748 158 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-------Y---P-----SR 218 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L-p-------~---~-----d~ 218 (555)
+|||+|||+|.++..|++. .|+++|+++.++..+..+.. ..+. ++.+..+|+..+ + + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIA-ANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 6999999999999999873 79999999998877664443 3343 578888886442 1 1 0 11
Q ss_pred CccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 219 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 219 sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.||+|+.--- -..-...++..+ ++|++.++++..+. ..-+++..+.+ +|++...+..
T Consensus 279 ~~d~v~lDPP---R~G~~~~~l~~l---~~~~~ivYvsC~p~--------tlaRDl~~L~~--~Y~l~~v~~~ 335 (353)
T TIGR02143 279 NCSTIFVDPP---RAGLDPDTCKLV---QAYERILYISCNPE--------TLKANLEQLSE--THRVERFALF 335 (353)
T ss_pred CCCEEEECCC---CCCCcHHHHHHH---HcCCcEEEEEcCHH--------HHHHHHHHHhc--CcEEEEEEEc
Confidence 3798884321 111112344444 34888888876431 12335555542 3877766544
No 202
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.25 E-value=0.00016 Score=71.22 Aligned_cols=95 Identities=22% Similarity=0.429 Sum_probs=62.1
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHH----hhccccc---hh-cccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGLIG---TV-HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i----~~rgl~g---~~-~~~ce~~~typrtydl~h~~~~ 470 (555)
+.|+|++||.|+++..+.+. +- -+|+-++- ++.+... -+.|+-+ +. .|..+. .+|.+||+|++.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 36999999999998887542 21 13333332 2444332 2345532 22 222221 34679999999888
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
|.... +...++-++.|+|+|||++++.+.
T Consensus 77 l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIK----DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCC----CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 87432 367899999999999999998763
No 203
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.25 E-value=0.0013 Score=63.92 Aligned_cols=99 Identities=15% Similarity=0.046 Sum_probs=62.1
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCC-CC-C-CCC-CccEEEeccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKR-LP-Y-PSR-SFELAHCSRC 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~-Lp-~-~d~-sFDlVv~s~~ 228 (555)
.+|||++||+|.++..++.+ .|+++|.++..+...+.+...... .++.+..+|+.. +. + ... .||+|+.--
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP- 129 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP- 129 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc-
Confidence 58999999999999999874 688999988777655544333322 246788888633 22 1 122 367776422
Q ss_pred cccccc-chHHHHHHHH--hhcCCCcEEEEEcC
Q 008748 229 RIDWLQ-RDGILLLELD--RLLRPGGYFVYSSP 258 (555)
Q Consensus 229 ~l~~~~-d~~~~L~el~--RvLkPGG~lvis~P 258 (555)
.|.. ....++..+. .+|+++|.+++-.+
T Consensus 130 --Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 130 --PFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred --CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2221 2233444443 47899998888554
No 204
>PRK04148 hypothetical protein; Provisional
Probab=97.21 E-value=0.001 Score=61.18 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=52.2
Q ss_pred CCEEEEECCCCcH-HHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC-CCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVAS-FGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~-~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|. ++..|++. .|+++|+++. .++.+++.+ +.+.+.|..+-.+. -+.+|+|.+.+...
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~-----aV~~a~~~~--~~~v~dDlf~p~~~~y~~a~liysirpp~- 88 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK-----AVEKAKKLG--LNAFVDDLFNPNLEIYKNAKLIYSIRPPR- 88 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHhC--CeEEECcCCCCCHHHHhcCCEEEEeCCCH-
Confidence 4689999999996 88888864 5666666554 455565554 46667776544432 35699999877432
Q ss_pred cccchHHHHHHHHhhc
Q 008748 232 WLQRDGILLLELDRLL 247 (555)
Q Consensus 232 ~~~d~~~~L~el~RvL 247 (555)
+....+.++.+-+
T Consensus 89 ---el~~~~~~la~~~ 101 (134)
T PRK04148 89 ---DLQPFILELAKKI 101 (134)
T ss_pred ---HHHHHHHHHHHHc
Confidence 2233455555544
No 205
>PRK00536 speE spermidine synthase; Provisional
Probab=97.21 E-value=0.0028 Score=64.80 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHH---HHHH-HcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQI---QFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i---~~A~-~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
+++++||=||.|.|..++.+++. +|+-+|+++..+..+.. ..+. -..+++.+... .. .-..++||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEcC
Confidence 55789999999999999999986 57777777755533321 0111 11334554431 11 11236899999542
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
. ....+.+.+.|.|+|||.++......+.+ ...+..+.+-+++ .|..+
T Consensus 148 -~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~----~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 148 -E-----PDIHKIDGLKRMLKEDGVFISVAKHPLLE----HVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred -C-----CChHHHHHHHHhcCCCcEEEECCCCcccC----HHHHHHHHHHHHh-hCCce
Confidence 1 23568899999999999999865444322 2233444455555 46533
No 206
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.17 E-value=0.0024 Score=68.78 Aligned_cols=105 Identities=18% Similarity=0.068 Sum_probs=75.3
Q ss_pred CCEEEEECCCCcHHHHHHhc--C-CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCC-CC---CCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LP---YPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~-~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~-Lp---~~d~sFDlVv~s 226 (555)
+++|||+=|=||.|+.+.+. + .|+.||+|...+.-+..++....- .+..++++|+-. +. -...+||+|+.-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 57999999999999988775 3 899999998888777766655442 346788888532 22 223489999972
Q ss_pred ccc--------cccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 227 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 227 ~~~--------l~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
--. ..-..+...++..+.++|+|||.+++++-..
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 111 1111233558999999999999999988654
No 207
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.16 E-value=0.0018 Score=67.97 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeC-CCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d-~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
.....+|+|.|.|..+..+... .|.++++....+.+++.+.+ +.+..+.+| +++.| . -|+|++..+..|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~~P--~--~daI~mkWiLhd 248 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQDTP--K--GDAIWMKWILHD 248 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceecccccccCC--C--cCeEEEEeeccc
Confidence 3578999999999999998874 46677776655544443332 336666666 34444 3 369999997555
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEcC
Q 008748 232 WLQ-RDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 232 ~~~-d~~~~L~el~RvLkPGG~lvis~P 258 (555)
|.+ +..++|+++...|+|||.+++...
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 553 337799999999999999999764
No 208
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.15 E-value=0.0028 Score=66.61 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=66.9
Q ss_pred CEEEEECCCCcHHHHHHhcC--------CCccccCChhhhhHHHHHHHHHcCCCeEE--EEeCCCC----CCC--CCCCc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKR----LPY--PSRSF 220 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--------~V~~vdis~~dls~a~i~~A~~rg~~v~~--~~~d~~~----Lp~--~d~sF 220 (555)
..++|+|||.|.=+..|++. .++++|||...+..+..+...+..+.+.+ +.+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999766555431 36678888777766665554233344444 5666432 321 12346
Q ss_pred cEEEecccccccccchH--HHHHHHHh-hcCCCcEEEEEc
Q 008748 221 ELAHCSRCRIDWLQRDG--ILLLELDR-LLRPGGYFVYSS 257 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~~--~~L~el~R-vLkPGG~lvis~ 257 (555)
.+|+...+.+...+..+ .+|+++.+ .|+|||.|+|..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 78887665666655443 48999999 999999999865
No 209
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.12 E-value=0.00054 Score=69.81 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=64.7
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhcc-------c--cchhcccccCCCCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDRG-------L--IGTVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~rg-------l--~g~~~~~ce~~~typrtydl~h~~ 468 (555)
..|+|++||.|.++..|... +-+ +|+-+|-. +-|.+.-+|. . |-..+.-.+.++.=..+||++.+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 47999999999998887643 222 45556543 5555554442 1 122233345555323699999987
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
..+.... +...+|-||-|+|||||.+++-|
T Consensus 153 ~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV----DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC----CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7766332 47889999999999999998875
No 210
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.00023 Score=66.84 Aligned_cols=133 Identities=13% Similarity=0.261 Sum_probs=82.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-----CeEEEEeC--CCCCCCCCCCccEE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-----PSTLGVLG--TKRLPYPSRSFELA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~-----~v~~~~~d--~~~Lp~~d~sFDlV 223 (555)
+++||++|.|--.++..|... .|...|-. +.+...++....++. .......+ .........+||.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgn--e~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGN--EESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCC--HHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 368999999965555444432 34444433 333333333333321 11111111 11122334689999
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec-eEEeecC
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ-TVIWAKP 298 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~-~~iw~KP 298 (555)
+|+.| +-+.+.-+.+++.+.+.|+|.|..++..|..- +..+.+.+.++..||.+...++. ..+||+-
T Consensus 108 laADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg-------~sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 108 LAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRG-------QSLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCccc-------chHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 99998 44556667799999999999999999888742 34567888899999988776664 4577654
No 211
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.06 E-value=0.013 Score=61.80 Aligned_cols=117 Identities=11% Similarity=0.084 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
++.++|||||++|.|+..|+++ .|+++|..+.+- . ......+.....|......+.+.+|+|+|--
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~--~-----L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm----- 278 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ--S-----LMDTGQVEHLRADGFKFRPPRKNVDWLVCDM----- 278 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH--h-----hhCCCCEEEEeccCcccCCCCCCCCEEEEec-----
Confidence 4579999999999999999986 577777544321 1 1224567777777544332257899999754
Q ss_pred ccchHHHHHHHHhhcCCC--cEEEEEcCCCCCC-ChhhHHHHHHHHHHHHhcCc
Q 008748 233 LQRDGILLLELDRLLRPG--GYFVYSSPEAYAH-DPENRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPG--G~lvis~P~~~~~-~~e~~~~~~~l~~l~~~~gw 283 (555)
...|..+..-+.+.|..| ..+|+...-.... ..+.......+.+.+.+.|.
T Consensus 279 ve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 279 VEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred ccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 245677888888888776 4666655333222 23333345556666767775
No 212
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0018 Score=70.50 Aligned_cols=98 Identities=22% Similarity=0.405 Sum_probs=76.8
Q ss_pred EEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc-
Q 008748 158 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 233 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~- 233 (555)
++|-+|||.-.+...+.+ +.|+.+|+|+..+....+..+ .......+...|...+.|++++||+|+--.. ++.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGt-lDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGT-LDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCc-ccccc
Confidence 799999999999988876 378999999988866665555 3345678899999999999999999997653 3332
Q ss_pred cch---------HHHHHHHHhhcCCCcEEEEEc
Q 008748 234 QRD---------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 234 ~d~---------~~~L~el~RvLkPGG~lvis~ 257 (555)
.+. ...+.++.|+|++||.++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 222 235789999999999977644
No 213
>PLN02244 tocopherol O-methyltransferase
Probab=97.06 E-value=0.00032 Score=74.27 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=60.7
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhccccc---h-hcccccCCCCCCCccchhhccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIG---T-VHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl~g---~-~~~~ce~~~typrtydl~h~~~ 469 (555)
.-..|+|++||.|+++..|.+.- -.+|+=++-. ..+.. +-++|+.. . -.|.. .++.=+.+||+|.+..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cCCCCCCCccEEEECC
Confidence 34679999999999998887531 1234333322 33332 23345422 1 12332 2232247999999877
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+.++. +...+|-||-|+|||||.++|-+
T Consensus 195 ~~~h~~----d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMP----DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 665332 35688999999999999999853
No 214
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.0043 Score=64.09 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=55.1
Q ss_pred CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChh-------hHH-HHHHHHHHHHhcCcEEEEEe
Q 008748 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-------NRR-IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e-------~~~-~~~~l~~l~~~~gw~vv~~~ 289 (555)
++||+|+..+ .+.-..+.-.++..+..+|+|||+++=.+|-.|+...+ ..+ ..+++..+++..||++++++
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699998765 45544555668999999999999999888876543221 122 56789999999999999887
Q ss_pred ec
Q 008748 290 DQ 291 (555)
Q Consensus 290 ~~ 291 (555)
..
T Consensus 337 ~I 338 (369)
T KOG2798|consen 337 GI 338 (369)
T ss_pred ee
Confidence 44
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.01 E-value=0.011 Score=58.75 Aligned_cols=123 Identities=13% Similarity=0.149 Sum_probs=80.1
Q ss_pred CCEEEEECCCCcHHHHHHh----cCCCccccCChhhhhHHHH-HHHHHcCCC-eEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQI-QFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La----~~~V~~vdis~~dls~a~i-~~A~~rg~~-v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+++|||+|.|.=+..|+ +.+++-+|-...-+ +.+ +.+.+.+.+ ++++.+-++.+.-....||+|+|-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA-- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA-- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh--
Confidence 4699999999997776665 23455565544322 222 233445665 8888888887763211199998543
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+ .+...++.-+...|++||.+++. ........+.+.+......++.+......
T Consensus 144 v---a~L~~l~e~~~pllk~~g~~~~~------k~~~~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 144 V---ASLNVLLELCLPLLKVGGGFLAY------KGLAGKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred c---cchHHHHHHHHHhcccCCcchhh------hHHhhhhhHHHHHHHHHhhcCcEEEEEEe
Confidence 2 23455777888899999987641 12233456778888888888887765544
No 216
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.00 E-value=0.0085 Score=63.62 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=58.3
Q ss_pred eEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----HhhccccchhcccccCCCCCCCccchhhcccccccc-
Q 008748 402 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI- 474 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~- 474 (555)
.|+|++||.|.++++|... |.- .|+-+|.. .-|.. +-..|+-+..+ +...++.-+.+||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 5999999999999988754 311 13333322 11111 11233333222 233344446899999988766421
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEe
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
....-..+.++-++-|.|+|||.++|=
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 111112578899999999999999874
No 217
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.99 E-value=0.00064 Score=65.56 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=71.3
Q ss_pred eeEeeccCCcchhhhhccC-CCceEEEecccCCC-CchhH----Hhhccc--cchhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l~~----i~~rgl--~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
.+|+|++||.|.++..|.. .+- ..|+-++.. ..+.+ +-+.|+ |-+.+.=.+.++ ...+||+|-+.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 5899999999987765532 121 235555543 33332 223344 222221122232 357999987765 2
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcC-ccce
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALK-WDGW 522 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~-w~~~ 522 (555)
..+.+++-++.|+|+|||.+++........++.++.++++ |...
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 2477888889999999999999998888999988887643 5553
No 218
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.99 E-value=0.00079 Score=68.02 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=66.5
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhhccccchhcccccCCCCCCCccchhhcccccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
+....-..|+|++||.|.++.+|... |- ..|+=++- +..+...-++++-=+-.|- +.+. ...+||+|+++.+|-
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhh
Confidence 44444478999999999999888754 22 23444553 3566666666632111222 2332 235899999999886
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.+. +...+|-|+-|+|+|||.+++-
T Consensus 101 ~~~----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 101 WVP----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCC----CHHHHHHHHHHhCCCCcEEEEE
Confidence 332 3578899999999999999985
No 219
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.007 Score=66.16 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC---CCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~---d~sFDlVv~s~~~ 229 (555)
+..++||+=||.|.|+..|+++ +|+|+++++.++..++.+.+.....++.|..++++.+... ...+|.|+.---
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP- 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP- 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC-
Confidence 3468999999999999999964 8999999999998777655555555688888987766532 357899994210
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
-. .-...+++.+. -++|...+++|-.+ ..+.+=...+.+.|+++.+.
T Consensus 372 R~--G~~~~~lk~l~-~~~p~~IvYVSCNP---------~TlaRDl~~L~~~gy~i~~v 418 (432)
T COG2265 372 RA--GADREVLKQLA-KLKPKRIVYVSCNP---------ATLARDLAILASTGYEIERV 418 (432)
T ss_pred CC--CCCHHHHHHHH-hcCCCcEEEEeCCH---------HHHHHHHHHHHhCCeEEEEE
Confidence 00 00123455554 45788888888754 23333445566778765543
No 220
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.97 E-value=0.00039 Score=71.43 Aligned_cols=110 Identities=15% Similarity=0.387 Sum_probs=69.0
Q ss_pred HHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhH----HhhccccchhcccccCCCC
Q 008748 384 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGLIGTVHDWCESFST 457 (555)
Q Consensus 384 v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~----i~~rgl~g~~~~~ce~~~t 457 (555)
++.+...++ |+.|. +|||++||.||++-.+.+. .+ +|+-++- .+++.. |-++||-+...=-|.-+..
T Consensus 51 ~~~~~~~~~--l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHTTTT----TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHhC--CCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 344445443 66665 8999999999999998765 54 4444443 355554 5688886543322333333
Q ss_pred CCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 458 YPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 458 yprtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+-+||-|=+-+.|-+... =+...++-.++|+|+|||.+++..
T Consensus 124 ~~~~fD~IvSi~~~Ehvg~--~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVGR--KNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp ---S-SEEEEESEGGGTCG--GGHHHHHHHHHHHSETTEEEEEEE
T ss_pred cCCCCCEEEEEechhhcCh--hHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4449998888888876532 247788999999999999999763
No 221
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.96 E-value=0.00072 Score=71.11 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=58.8
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-Cch---hHHhh-ccc---cchhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARL---KIIYD-RGL---IGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l---~~i~~-rgl---~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
+.|+|++||.|.|+..|... +.-| +=++.. ..+ ..+-. .+. |-+.+.=-|.++. +.+||+|++.+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V---~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLV---VGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEE---EEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 68999999999999888654 2233 333322 111 11100 010 1111111234444 7899999999887
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
-+. -+...+|-++-|.|+|||.+|+.
T Consensus 200 ~H~----~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 YHR----RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hcc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 632 35788999999999999999975
No 222
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.94 E-value=0.0013 Score=66.56 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=79.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCCC-CCCCC-CccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL-PYPSR-SFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~L-p~~d~-sFDlVv 224 (555)
++++||=||-|.|..+..+++. .|+.+|+++.-+..+..-+... ...++.+...|...+ .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4679999999999999999874 5778888877665444333222 235788888885332 11223 899999
Q ss_pred ecccccccccc----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 225 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 225 ~s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
.-.. -..... ...+++.+.+.|+|||.+++-....+. .......+.+.+++....+
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~----~~~~~~~i~~tl~~~F~~v 215 (246)
T PF01564_consen 156 VDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL----HPELFKSILKTLRSVFPQV 215 (246)
T ss_dssp EESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT----THHHHHHHHHHHHTTSSEE
T ss_pred EeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc----chHHHHHHHHHHHHhCCce
Confidence 6321 111111 256999999999999999986533221 1234556666777766633
No 223
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.93 E-value=0.0045 Score=61.49 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=66.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCC-CCC-----CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTK-RLP-----YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~-~Lp-----~~d~sFDl 222 (555)
++++||||.=||+.+..+|- .+|+++|+......... ++.+..+. .+.+.++.+. .|+ .+.++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 35899999988876666653 37899999887665553 34444443 4667776632 222 35689999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
|+. =+|-.+...+..++.++||+||.+++-
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 983 334444456899999999999999973
No 224
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.92 E-value=0.00045 Score=70.23 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCcHHHHHHh-c--CCCccccCChhhhhHHHH--------------HH-HHHcCC-------------C-
Q 008748 155 NIRNVLDVGCGVASFGAYLL-S--HDIIAMSLAPNDVHENQI--------------QF-ALERGI-------------P- 202 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La-~--~~V~~vdis~~dls~a~i--------------~~-A~~rg~-------------~- 202 (555)
++.++||||||.-.+-..-+ + .+|+..|+++....+-.. +. +.-.|. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 45699999999975533222 2 156666665544321110 11 110111 1
Q ss_pred eEEEEeCCCCC-CCCC-----CCccEEEecccccccc-cch---HHHHHHHHhhcCCCcEEEEEcCCC---CCCC----h
Q 008748 203 STLGVLGTKRL-PYPS-----RSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSSPEA---YAHD----P 265 (555)
Q Consensus 203 v~~~~~d~~~L-p~~d-----~sFDlVv~s~~~l~~~-~d~---~~~L~el~RvLkPGG~lvis~P~~---~~~~----~ 265 (555)
-.++.+|.... |+.. ..||+|++++| ++.. .+. ...++++.++|||||.|++..--. |... .
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fc-LE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFC-LESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESS-HHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHH-HHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 13566775443 3332 35999999987 5544 344 448999999999999999865211 0000 0
Q ss_pred hhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 266 ENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 266 e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
-..-.-+.+++.+++.||.+...+
T Consensus 215 ~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ---B-HHHHHHHHHHTTEEEEEEE
T ss_pred cccCCHHHHHHHHHHcCCEEEecc
Confidence 000022467788899999888766
No 225
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.91 E-value=0.0018 Score=67.31 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc-----------CCCccccCChhhhhHHHHHHHHHc--
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------HDIIAMSLAPNDVHENQIQFALER-- 199 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------~~V~~vdis~~dls~a~i~~A~~r-- 199 (555)
....+.+.+++.. ....+|||-.||+|.|...+.+ ..+.|+|+++....-+..+.....
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 3445566666642 2345899999999998877654 267788888877766665554332
Q ss_pred CCCeEEEEeCCCCCCC-C-CCCccEEEeccccccc--c------------------cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 200 GIPSTLGVLGTKRLPY-P-SRSFELAHCSRCRIDW--L------------------QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 200 g~~v~~~~~d~~~Lp~-~-d~sFDlVv~s~~~l~~--~------------------~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.....+...|....+. . .+.||+|+++--.... . .....++..+.+.|++||.++++.
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1123466677543332 2 4789999985211111 0 001247889999999999999988
Q ss_pred CCC
Q 008748 258 PEA 260 (555)
Q Consensus 258 P~~ 260 (555)
|..
T Consensus 184 p~~ 186 (311)
T PF02384_consen 184 PNG 186 (311)
T ss_dssp EHH
T ss_pred cch
Confidence 864
No 226
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.89 E-value=0.0081 Score=63.46 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=98.0
Q ss_pred eeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHH
Q 008748 118 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~ 194 (555)
++.+.-....|.++-..-...++++.. .+.+|||+=||.|.|+..+|.. .|.++|++|..+.-...+
T Consensus 161 ~f~vD~~Kv~Fsprl~~ER~Rva~~v~----------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eN 230 (341)
T COG2520 161 RFKVDVAKVYFSPRLSTERARVAELVK----------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKEN 230 (341)
T ss_pred EEEEchHHeEECCCchHHHHHHHhhhc----------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHH
Confidence 344433444555554433334444443 2468999999999999998863 489999999888666655
Q ss_pred HHHHcCCC-eEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHH
Q 008748 195 FALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNA 273 (555)
Q Consensus 195 ~A~~rg~~-v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~ 273 (555)
....+-.. +..+.+|...++...+.||-|++.. ..+...++....+.|++||.+-+..-....... ......
T Consensus 231 i~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~--~~~~~~ 303 (341)
T COG2520 231 IRLNKVEGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIE--ERPEKR 303 (341)
T ss_pred HHhcCccceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEeccchhhcc--cchHHH
Confidence 54444323 6788899888776658899999654 223356899999999999998875432110000 013457
Q ss_pred HHHHHHhcCc
Q 008748 274 MYDLLKSMCW 283 (555)
Q Consensus 274 l~~l~~~~gw 283 (555)
+...+.+.|+
T Consensus 304 i~~~~~~~~~ 313 (341)
T COG2520 304 IKSAARKGGY 313 (341)
T ss_pred HHHHHhhccC
Confidence 7778888876
No 227
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.83 E-value=0.001 Score=67.89 Aligned_cols=97 Identities=23% Similarity=0.350 Sum_probs=59.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc----ccch-hcccccCCCCCC-Cccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG----LIGT-VHDWCESFSTYP-RTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg----l~g~-~~~~ce~~~typ-rtydl~h~~~~~s~ 473 (555)
..|+|++||+|+++..|.... -..|+-++-. +.+...-+|- -|-. ..|.. .. .|| .+||+|++...|-+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~-~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KK-DFPENTFDMIYSRDAILH 129 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cC-CCCCCCeEEEEEhhhHHh
Confidence 469999999999988875431 1244444432 3344333331 1111 11211 11 233 69999998765542
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+. .-+...++-|+-|+|+|||.+++.|-
T Consensus 130 ~~--~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 130 LS--YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CC--HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 21 11467899999999999999999764
No 228
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.79 E-value=0.0063 Score=68.11 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHhhcCCCcEEEEEcCCCCCCC
Q 008748 241 LELDRLLRPGGYFVYSSPEAYAHD 264 (555)
Q Consensus 241 ~el~RvLkPGG~lvis~P~~~~~~ 264 (555)
..+.++|++||++.++.|..+...
T Consensus 180 ~~~~~lL~~~G~~~~I~P~s~l~~ 203 (524)
T TIGR02987 180 EISLEIANKNGYVSIISPASWLGD 203 (524)
T ss_pred HHHHHhcCCCCEEEEEEChHHhcC
Confidence 457899999999999999875443
No 229
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.78 E-value=0.0019 Score=63.97 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=58.5
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHH----hhccc--cchhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKII----YDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i----~~rgl--~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++..|.+. +- .+|+=++-. +.+... -+.++ +-+++.=.+.++.-+.+||+|++...|
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 47999999999999888642 21 123333322 333222 12233 122222122333223699999987766
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.... +...++-|+-|+|+|||.+++.|.
T Consensus 125 ~~~~----~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVP----DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCC----CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 5322 256788999999999999998753
No 230
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.77 E-value=0.00077 Score=65.58 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=60.2
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhcccc--chhcccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl~--g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
..|+|++||.|.++..|.... ..|+-+|.. +.+..+ -+.|+- ..-.|. +.+ .++.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~-~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAA-ALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhc-cccCCCCEEEEeccccc
Confidence 479999999999998887642 256666653 334332 233441 111222 122 23568999998887763
Q ss_pred cccCCCChhhhhhhhcccccCCceEEE
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
+.. -....++-++.|.|+|||++++
T Consensus 107 ~~~--~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQA--GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCH--HHHHHHHHHHHHHhCCCcEEEE
Confidence 321 2467899999999999998554
No 231
>PRK08317 hypothetical protein; Provisional
Probab=96.76 E-value=0.0018 Score=63.35 Aligned_cols=98 Identities=26% Similarity=0.289 Sum_probs=61.9
Q ss_pred cceeEeeccCCcchhhhhccCCC-ceEEEecccCC-CCchhHHhhc--cccchh----cccccCCCCCCCccchhhcccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRM-SARLKIIYDR--GLIGTV----HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~-~wvmnv~p~~~-~~~l~~i~~r--gl~g~~----~~~ce~~~typrtydl~h~~~~ 470 (555)
.-.+|+|++||.|.++..+.+.- .- -+|+-++. ++.+...-++ +.-... .|.. .++.-+.+||+||+..+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEech
Confidence 34579999999999998886431 00 13444443 2445555444 111111 1221 12222368999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|..+. +...++-++-|+|+|||++++-+
T Consensus 97 ~~~~~----~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 LQHLE----DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhccC----CHHHHHHHHHHHhcCCcEEEEEe
Confidence 87432 46789999999999999998754
No 232
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.66 E-value=0.0018 Score=69.67 Aligned_cols=95 Identities=19% Similarity=0.405 Sum_probs=63.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhhc--cccchhcccccCCCCCCCccchhhcccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~r--gl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
..|+|++||.|+++..|... .+ .|+-++- +..+...-+| |+ ++ +=-+..+...+.+||+|.+.++|.....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 47999999999999888653 32 4555553 3566655544 22 11 1111122223578999999888874321
Q ss_pred CCCChhhhhhhhcccccCCceEEEec
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
-....++-++.|+|+|||.+++.+
T Consensus 244 --~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 --KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 246788999999999999999864
No 233
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.62 E-value=0.004 Score=66.81 Aligned_cols=96 Identities=9% Similarity=0.087 Sum_probs=69.0
Q ss_pred CEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-CCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l 230 (555)
-+|||+.||+|..+..++.. .|+++|+++..+.....+.......++.+...|+..+- .....||+|..-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD---- 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID---- 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----
Confidence 47999999999999998863 58899999987765554443332234677777765442 223579999842
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.| ..+..++..+.+.+++||++.++.
T Consensus 122 Pf-Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 PF-GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CC-CCcHHHHHHHHHhcccCCEEEEEe
Confidence 12 344578999999999999999984
No 234
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.61 E-value=0.021 Score=56.76 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=86.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-C--CCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y--PSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~--~d~sFDlVv~s 226 (555)
++.+||-+|+.+|....++++ ..|.++++++... ...+..|.+| .++.-+..|+..-. | --+..|+|++-
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R-~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKR-PNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHS-TTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccC-CceeeeeccCCChHHhhcccccccEEEec
Confidence 346899999999988887775 2578999999765 4445777776 46666667764221 1 12479999964
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCC-CCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~-~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
- ......+.++.++...||+||.++++.... ..........|.+-.+.+++.+|++.+....
T Consensus 151 V---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 151 V---AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp ----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred C---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 3 222334568889999999999999976441 1112233457887778888889998876553
No 235
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.017 Score=58.83 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=52.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCC-CccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR-SFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~-sFDlVv~s 226 (555)
..+|||||+|.|.++..|+++ .|+++++++..+..-....+ ...+..++.+|+....+++- .++.|+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 468999999999999999985 78999998866533332221 34678899999988888753 57888854
No 236
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.024 Score=55.77 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=61.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------~~d~sFDl 222 (555)
+.+|+|+|+-.|+++..+++. .|+++|+.+.+. ...+.+.++|+..-+ +....+|+
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 468999999999999998864 488999988765 234777778764432 33445799
Q ss_pred EEeccc---ccccccch-------HHHHHHHHhhcCCCcEEEEEc
Q 008748 223 AHCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 223 Vv~s~~---~l~~~~d~-------~~~L~el~RvLkPGG~lvis~ 257 (555)
|+|-.. .-++..|. ..++.-+..+|+|||.|++-.
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 996321 11111111 335666778999999999855
No 237
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.58 E-value=0.003 Score=66.20 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=57.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCCC----chhHHh----hccccchhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSA----RLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~----~l~~i~----~rgl~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
+.|+|++||.|.++.+|.....- .|+-++... +...+- ..+.+.+..-=.|.++. +.+||+|-+.+++-
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence 68999999999998877654221 234344321 111110 01111111111123332 34899999999876
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+. -+..++|-|+-|+|||||.+|+.
T Consensus 200 H~----~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HR----KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cc----CCHHHHHHHHHHhcCCCCEEEEE
Confidence 42 35789999999999999999975
No 238
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.58 E-value=0.00092 Score=67.61 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=63.3
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc---hhc-ccccCCC-CCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG---TVH-DWCESFS-TYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g---~~~-~~ce~~~-typrtydl~h~~~~ 470 (555)
..|+|++||.|.++..|.... -+|+-++.. ..+...-+ .|+.. +.+ |..+ +. ..+.+||+|.+.++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEehhH
Confidence 489999999999999998753 356666643 45544332 34422 111 1111 22 23579999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
|..+. +...++-++-|+|+|||.+++-
T Consensus 122 l~~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVA----DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhC----CHHHHHHHHHHHcCCCeEEEEE
Confidence 87443 3568899999999999999864
No 239
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.56 E-value=0.0011 Score=64.73 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=61.3
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhcccc---chhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLI---GTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl~---g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
-+|+|++||.|.++..|.+.- + +|+-++.. .-+.. +-.+|+- ....|..+ + +++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 479999999999999998652 2 55555543 33322 3344542 22345433 2 2367899999887764
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEE
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
.+. .-....++-+|-|.|+|||++++
T Consensus 107 ~~~--~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLE--AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCC--HHHHHHHHHHHHHHcCCCcEEEE
Confidence 221 12467899999999999999654
No 240
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=0.0017 Score=60.75 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=55.0
Q ss_pred CCCCCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCC------------------C-ChhhH
Q 008748 210 TKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA------------------H-DPENR 268 (555)
Q Consensus 210 ~~~Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~------------------~-~~e~~ 268 (555)
....+|.+++.|+|++.+ +++|.... ..++++++|+|||||++-++.|.... + +....
T Consensus 38 s~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v 116 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIV 116 (185)
T ss_pred hhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHH
Confidence 456789999999999988 57766433 45899999999999999999987311 1 11122
Q ss_pred HHHHHHHHHHHhcCcEE
Q 008748 269 RIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 269 ~~~~~l~~l~~~~gw~v 285 (555)
..++.+.+.+.+.||.+
T Consensus 117 ~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 117 KTMRMMFNGFMDAGFVV 133 (185)
T ss_pred HHHHHHHHHHHhhhhee
Confidence 35667788888888754
No 241
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.55 E-value=0.0026 Score=61.11 Aligned_cols=113 Identities=11% Similarity=0.068 Sum_probs=71.4
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccccchhcccc-cCCCCCCCccchhhccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHDWC-ESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl~g~~~~~c-e~~~typrtydl~h~~~~~ 471 (555)
.-.+|+|++||.|.++.++... |- -+|+-++.. ..+...- ..|+-. ..-.+ .....++..||++.+++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc
Confidence 3457999999999998877542 21 234444432 3333221 123211 11011 1123446789999876543
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 521 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~ 521 (555)
..+..++-++-|+|+|||.+++-+ ..+-..++.++++...++.
T Consensus 108 -------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 246788889999999999999976 5666788888998888853
No 242
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.54 E-value=0.0023 Score=66.11 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCC-CC--CCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LP--YPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~-Lp--~~d~sFDlVv~s~ 227 (555)
.++|||+=|=||.|+.+.+.. .|+.+|.|...+..+..+.+...- ..+.+...|+.. +. -..++||+|++--
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 369999999999999876642 688999999888888766665542 356788888532 21 1236899999831
Q ss_pred c-----ccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 228 C-----RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 228 ~-----~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
- ...-..+...++..+.++|+|||.+++++-.
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 1 1111234456889999999999999887644
No 243
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.54 E-value=0.0034 Score=61.59 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=59.3
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc---ccchhcccccCCCCCCCccchhhcccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG---LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg---l~g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
..|+|++||.|.|...|...-. ...|+-++.. .-+...-++. +.-+..|. +.++..+.+||+|.+.+++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc--
Confidence 5799999999999988865310 0112223321 2222222221 11111222 3334456799999999887632
Q ss_pred CCCChhhhhhhhcccccCCceEEEec
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+...++-++.|+|+|||.+++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 247789999999999999999863
No 244
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.54 E-value=0.0045 Score=64.34 Aligned_cols=96 Identities=14% Similarity=0.241 Sum_probs=59.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.+.|||+|||+|.++...+++ .|.+++.+.. ...++ +..+.... ++.++.+-++++.+| +..|+|++-- +
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M-AqyA~-~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEP--M 252 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM-AQYAR-KLVASNNLADRITVIPGKIEDIELP-EKVDVIISEP--M 252 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhHH-HHHHH-HHHhcCCccceEEEccCccccccCc-hhccEEEecc--c
Confidence 468999999999888776653 6777765542 22222 22222222 355666667888777 5799999643 3
Q ss_pred ccccchHHH---HHHHHhhcCCCcEEEEE
Q 008748 231 DWLQRDGIL---LLELDRLLRPGGYFVYS 256 (555)
Q Consensus 231 ~~~~d~~~~---L~el~RvLkPGG~lvis 256 (555)
.++--.++. ....+|.|+|.|..+=+
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 332222222 33456999999998743
No 245
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0019 Score=59.93 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=54.5
Q ss_pred CCEEEEECCCCcHHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La--~-~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
++.++|+|||.|-++...+ + ..|+|+|+.+..+.... +.|.+-..++.+.++|+..+.+..+.||.++.+.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 4689999999997774433 2 47899999998775554 4455556777889999988888778999998653
No 246
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.51 E-value=0.0044 Score=59.13 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=73.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhccccc--hhcccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLIG--TVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl~g--~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.+|+|++||.|.++.+|...-. .|+-++-. ..+... ...|+-. +.-|+.+. .+.+||+|-++--|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4699999999999988876432 45545432 333321 1122211 12244443 2469999987755531
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCceEEEecchhH-HHHHHHHHhhcCccce
Q 008748 474 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSI-INYIRKFITALKWDGW 522 (555)
Q Consensus 474 ~~~-----------------~~c~~~~~~~e~drilrp~g~~i~rd~~~~-~~~~~~~~~~~~w~~~ 522 (555)
... ...-+..++-++.|+|+|||.+++-+.... ..++.+.++...++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 110 012257789999999999999998765555 6777777777778763
No 247
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.089 Score=52.78 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEE-EEeCCCCCC---CCCCCccEEEec
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLP---YPSRSFELAHCS 226 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~-~~~d~~~Lp---~~d~sFDlVv~s 226 (555)
-+.+.+||||+-||.|+..++++ .|.++|+.-..++... +..+++.. ...++..+. +. +..|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 34579999999999999999975 6888888766665443 33444433 233444443 22 357899975
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC------------CChhhH-HHHHHHHHHHHhcCcEEEEEe
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPENR-RIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~------------~~~e~~-~~~~~l~~l~~~~gw~vv~~~ 289 (555)
-+.+. ...+|..+..+|+++|.++.-..+.+. +++... ..-.++.+.+...||.+....
T Consensus 152 vSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 152 VSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred eehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 43332 356899999999999998875544221 233332 356688899999999877443
No 248
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.48 E-value=0.0029 Score=60.44 Aligned_cols=91 Identities=25% Similarity=0.327 Sum_probs=51.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeC---------CCCC-CCCCCC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG---------TKRL-PYPSRS 219 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d---------~~~L-p~~d~s 219 (555)
...+|||+||++|+|+..++++ .|+++|+.+.... ..+.+..+| +... +-..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhccccccC
Confidence 4579999999999999999875 4778888765211 111221222 1111 111268
Q ss_pred ccEEEeccccccccc----ch-------HHHHHHHHhhcCCCcEEEEEc
Q 008748 220 FELAHCSRCRIDWLQ----RD-------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 220 FDlVv~s~~~l~~~~----d~-------~~~L~el~RvLkPGG~lvis~ 257 (555)
||+|+|-. ...... +. ...+.-+...|+|||.+++-.
T Consensus 92 ~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 92 FDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp ESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 99999743 122111 11 124455567899999988755
No 249
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.48 E-value=0.0059 Score=59.38 Aligned_cols=147 Identities=11% Similarity=0.109 Sum_probs=82.6
Q ss_pred cCCChhhHhH--hHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh--
Q 008748 366 VGVTTEEFHE--DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY-- 440 (555)
Q Consensus 366 ~~~~~~~~~~--d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~-- 440 (555)
.|++.++|.. +...|++.|..= .+. .+.-..=-.|+||+||.|.|+.++...-----.|+-++.. .-+..+-
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~--~l~-~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRAL--ALS-KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHH--HHH-HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3677778875 445888877542 121 1222222479999999999977653210000234444432 3333221
Q ss_pred --hccccc---h-hcccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHH
Q 008748 441 --DRGLIG---T-VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKF 513 (555)
Q Consensus 441 --~rgl~g---~-~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~ 513 (555)
.-|+.. + -.|..+..+.++-.||++...+ ....+..++-++-|+|+|||.+++. -+.+.+.++...
T Consensus 85 ~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~-------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 157 (198)
T PRK00377 85 AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG-------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSA 157 (198)
T ss_pred HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC-------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHH
Confidence 123211 1 1233332333334688776432 1134778899999999999999982 345667777777
Q ss_pred HhhcCccce
Q 008748 514 ITALKWDGW 522 (555)
Q Consensus 514 ~~~~~w~~~ 522 (555)
++.+.++..
T Consensus 158 l~~~g~~~~ 166 (198)
T PRK00377 158 LENIGFNLE 166 (198)
T ss_pred HHHcCCCeE
Confidence 776666543
No 250
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.45 E-value=0.0019 Score=64.88 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----ccc--chhcc
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLI--GTVHD 450 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~--g~~~~ 450 (555)
+.|++.+..... ...+. .|+|+.||+|-++..|.+.-----.|+-+|-+ +-|.+.-+| |+. =..+.
T Consensus 33 ~~wr~~~~~~~~-----~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLLG-----LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHHT-------S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhccC-----CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 789987765421 22232 89999999999988876531111256666644 666665544 332 12222
Q ss_pred cccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 451 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 451 ~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
=.|.++.-..|||.+=....+-.. ++..-.|-||=|+|||||.++|=|.
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 246666545799998766555422 4578899999999999999987653
No 251
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.43 E-value=0.0028 Score=61.99 Aligned_cols=122 Identities=14% Similarity=0.115 Sum_probs=75.3
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccc--cchh-cccccCCCC-C-CCccchhhc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGL--IGTV-HDWCESFST-Y-PRTYDLLHA 467 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl--~g~~-~~~ce~~~t-y-prtydl~h~ 467 (555)
.-.+|+|++||.|.++..|... |- .+|+-++-. ..+...- ..|+ +-+. .|+.+.++. + +.+||++-.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3478999999999998888643 22 134444432 3333221 2233 1112 233233431 3 568999875
Q ss_pred cccccc----cccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcCccce
Q 008748 468 WKVFSE----IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 468 ~~~~s~----~~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~w~~~ 522 (555)
...... ...++.....+|-++.|+|+|||.++|. +....+..+.+.+..-.|.+.
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 432210 1112234678999999999999999985 777788888888888888774
No 252
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.40 E-value=0.0028 Score=66.67 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=65.5
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc---cchhcccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl---~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
+|+|++||.|.|+..|.... .+|+-+|.. ..+.+.-++ ++ |-..+.=.|.++..+.+||+|=+.+++.+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 79999999999998887532 356666654 445544433 22 11222223445544579999999888875
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+. +...+|-|+=|+|+|||.++|.+
T Consensus 211 v~----d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA----NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 46889999999999999999875
No 253
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.39 E-value=0.0073 Score=59.58 Aligned_cols=120 Identities=12% Similarity=0.100 Sum_probs=62.8
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHh---cC-CCccccCChhhhhHHH--HHHHHH-
Q 008748 126 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL---SH-DIIAMSLAPNDVHENQ--IQFALE- 198 (555)
Q Consensus 126 ~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La---~~-~V~~vdis~~dls~a~--i~~A~~- 198 (555)
..|..........+.+.+.+ .+....+|||||.|......+ +. ...|+++.+.-...+. .+...+
T Consensus 21 ~~YGEi~~~~~~~il~~~~l--------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~ 92 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNL--------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR 92 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHHHHhCC--------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH
Confidence 34555555555666666553 234689999999997655544 22 4789999876332222 222111
Q ss_pred ---cC---CCeEEEEeCCCCCCCCC---CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 199 ---RG---IPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 199 ---rg---~~v~~~~~d~~~Lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
.+ .++.+..+|+.+.++.. ..-|+|++++. -|.++....|.+...-||+|-+++-
T Consensus 93 ~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 93 MKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 12 23556666654433210 23699998763 3555666677888888998877664
No 254
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.36 E-value=0.0014 Score=67.72 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=70.1
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhcccc--chhcccccCCCCCCCccchhhcccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl~--g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
+|+|++||.|.++..|.... ..|+-+|.. .-+.. +-+.|+- -...|.-+ .. .+..||+|-+..+|..+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhhhC
Confidence 79999999999998887653 255555543 33332 3345651 11122211 11 26799999998887643
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEe---cch-----------hHHHHHHHHHhhcCccc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIR---DKS-----------SIINYIRKFITALKWDG 521 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~r---d~~-----------~~~~~~~~~~~~~~w~~ 521 (555)
. .-.+..++-+|-|+|+|||++++- +.. -.-++++++... |++
T Consensus 198 ~--~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i 254 (287)
T PRK12335 198 N--RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEI 254 (287)
T ss_pred C--HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEE
Confidence 2 124778999999999999996542 111 124556666666 876
No 255
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.36 E-value=0.12 Score=55.74 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=54.0
Q ss_pred EEEEECCCCcHHHHHHhcCCCccccCChhhhh-HHHHHHHHHcCCCeE-EEEeCCCCCCCCCCCccEEEecccccccccc
Q 008748 158 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH-ENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~~V~~vdis~~dls-~a~i~~A~~rg~~v~-~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d 235 (555)
+||=++=..|.++..|+...++.+ +..-++ .+..+.+...+.+.. +...+.. -+++ +.+|+|+.-- ---...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~-~~~~-~~~d~vl~~~--PK~~~~ 120 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDST-ADYP-QQPGVVLIKV--PKTLAL 120 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeeccc-cccc-CCCCEEEEEe--CCCHHH
Confidence 699999999999999996554433 222222 333334444454322 2222221 1233 4599888321 111112
Q ss_pred hHHHHHHHHhhcCCCcEEEEEc
Q 008748 236 DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 236 ~~~~L~el~RvLkPGG~lvis~ 257 (555)
.+..+..+.++|.||+.++...
T Consensus 121 l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 121 LEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHhhCCCCCEEEEEE
Confidence 2447888999999999987644
No 256
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.34 E-value=0.0044 Score=62.48 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=68.0
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhcc-ccchhc-ccccCCCCCCCccchhhcccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRG-LIGTVH-DWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rg-l~g~~~-~~ce~~~typrtydl~h~~~~ 470 (555)
+....-.+|+|++||.|.++..|... |. -+|+=++.. .-+...-++- =+.+.. |- +.+. .+.+||+++++..
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~ 102 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADI-ASWQ-PPQALDLIFANAS 102 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECch-hccC-CCCCccEEEEccC
Confidence 33345578999999999999888643 21 133333432 2222221210 011111 11 1111 2469999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec--ch--hHHHHHHHHHhhcCccc
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD--KS--SIINYIRKFITALKWDG 521 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd--~~--~~~~~~~~~~~~~~w~~ 521 (555)
|..+. +...++-+|-|+|+|||.+++.- +. .....+++++....|.-
T Consensus 103 l~~~~----d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 103 LQWLP----DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred hhhCC----CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 86332 36789999999999999999852 11 11123445555555653
No 257
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.32 E-value=0.0049 Score=63.70 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=66.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchhcccccCCCC-CCCccchhhcccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTVHDWCESFST-YPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~~~~ce~~~t-yprtydl~h~~~~~s~~ 474 (555)
.+|+|++||.|.++.++..... -.|+-++-. .-+....++ |+-......+..... -+..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 5799999999998766654432 134444432 333332221 221122222221222 246899999876543
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHHhhcCccc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 521 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~~~~~w~~ 521 (555)
.+..++-++-|+|+|||++++..- .+-.++|.+.+++- |+.
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 256788899999999999998753 22345666666665 765
No 258
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.31 E-value=0.0024 Score=54.51 Aligned_cols=90 Identities=23% Similarity=0.348 Sum_probs=46.7
Q ss_pred eeccCCcchhhhhccCCCceEEEecccCC-CCchhH----Hhhccccc---hhcccccCCCCCC-Cccchhhcccccccc
Q 008748 404 MDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLIG---TVHDWCESFSTYP-RTYDLLHAWKVFSEI 474 (555)
Q Consensus 404 ~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~----i~~rgl~g---~~~~~ce~~~typ-rtydl~h~~~~~s~~ 474 (555)
||.+||.|.+...|.+.- -...++=+|- ++-|.. +.+.+.-. +-.+--+.+...+ .+||+|.+.++|..+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 699999999999997652 2233444443 244422 22222110 1111222333333 599999999999966
Q ss_pred ccCCCChhhhhhhhcccccCCceE
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFV 498 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~ 498 (555)
. ++..++-.+-++|+|||.+
T Consensus 80 -~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S----HHHHHHHHTTT-TSS-EE
T ss_pred -h---hHHHHHHHHHHHcCCCCCC
Confidence 3 4889999999999999975
No 259
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.26 E-value=0.0066 Score=62.04 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=81.9
Q ss_pred CChhhHhHhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcch----hhhhccCC----CceEEEecccCCC-CchhH
Q 008748 368 VTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGG----FAAALKDK----DVWVMNVAPVRMS-ARLKI 438 (555)
Q Consensus 368 ~~~~~~~~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~----faa~l~~~----~~wvmnv~p~~~~-~~l~~ 438 (555)
+.+..|..|...|....+.....+......+.--+|+|.+||.|- .|-.|.+. +-|...|+-+|-. .-|..
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 344568888899998776654433211122333579999999995 45444331 2345566666643 33332
Q ss_pred Hhhcccc-----------------------------------chhcccccCCCCCCCccchhhccccccccccCCCChhh
Q 008748 439 IYDRGLI-----------------------------------GTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFED 483 (555)
Q Consensus 439 i~~rgl~-----------------------------------g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~ 483 (555)
..+|.- =..||-.+.- .-+..||+|.+.++|..+.. =....
T Consensus 148 -Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~--~~~~~ 223 (264)
T smart00138 148 -ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDE--PTQRK 223 (264)
T ss_pred -HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCH--HHHHH
Confidence 222221 0134555432 12478999999988874321 12457
Q ss_pred hhhhhcccccCCceEEEecchh
Q 008748 484 LLIEMDRMLRPEGFVIIRDKSS 505 (555)
Q Consensus 484 ~~~e~drilrp~g~~i~rd~~~ 505 (555)
++-++-|+|+|||++++-....
T Consensus 224 ~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 224 LLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred HHHHHHHHhCCCeEEEEECccc
Confidence 9999999999999999987543
No 260
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.23 E-value=0.017 Score=56.15 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCCEEEEECCCCcHHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La--~-~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..++|||+|+|+|..+..-+ . ..|+..|+.+.-. .+..-.+...+..+.+...|... .+..||+|+.+..+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 45799999999996655544 3 3688888886543 33333445556677777666544 4577999998874333
Q ss_pred cccchHHHHHHHHhhcCCCcE-EEEEcCC
Q 008748 232 WLQRDGILLLELDRLLRPGGY-FVYSSPE 259 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~-lvis~P~ 259 (555)
+ +...+++. ..+.|+..|. +++-+|.
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 2 22244666 5555555554 4444554
No 261
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.22 E-value=0.0088 Score=60.47 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=64.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hccccchhcccccCCCCCCCccchhhccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
.+|+|++||.|..+.++.....= .|+-++-. ..+...- ..|+-...+-.+. .-+||++.++-+..
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----~~~fD~Vvani~~~--- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----DLKADVIVANILAN--- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----CCCcCEEEEcCcHH---
Confidence 57999999999887776543210 13333322 2333222 2233110110000 11799998764332
Q ss_pred cCCCChhhhhhhhcccccCCceEEEecch-hHHHHHHHHHhhcCccc
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDG 521 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd~~-~~~~~~~~~~~~~~w~~ 521 (555)
.+..++-++-|+|+|||.+|+.+.. +-...+.+.+....++.
T Consensus 191 ----~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~ 233 (250)
T PRK00517 191 ----PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTL 233 (250)
T ss_pred ----HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEE
Confidence 1456778999999999999998643 34667777888888876
No 262
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.20 E-value=0.0021 Score=55.78 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=59.3
Q ss_pred eEeeccCCcchhhhhccC-CCceEEEecccCCC-CchhHHh----hccccch----hcccccCCCCCCCccchhhccccc
Q 008748 402 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKIIY----DRGLIGT----VHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l~~i~----~rgl~g~----~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.|+|++||.|.++.+|.. .+-.- |+-++-. ..+.+.- +.++-.- ..|+... ...+..||++.+.+ |
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~-~ 79 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGAR--VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD-PDFLEPFDLVICSG-F 79 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSE--EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG-TTTSSCEEEEEECS-G
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC-cccCCCCCEEEECC-C
Confidence 689999999999999987 23332 4444432 3444322 2233222 2344122 44455699999999 3
Q ss_pred c--ccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 S--EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s--~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+ .+... -....+|-++-+.|+|||+++|.+
T Consensus 80 ~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 11111 234567888999999999999975
No 263
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.15 E-value=0.011 Score=60.43 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=60.2
Q ss_pred cceeEeeccCCcchhhhhccCC-C-ceEEEecccCCC-CchhHHhhccc-cchh-cccccCCCCCCCccchhhccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMS-ARLKIIYDRGL-IGTV-HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~-~~l~~i~~rgl-~g~~-~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.-.+|+|++||.|.+++.|.+. + .=-.+|+-+|-. +.+...-+|.- +... .|- +.++.=+.+||+|.+ +|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~--~~~- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIR--IYA- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEE--ecC-
Confidence 3356999999999999888642 1 100245556643 56655554421 1111 121 223322368999974 333
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHH
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFI 514 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~ 514 (555)
...+-|+.|+|+|||++|+... ..-+.+++.++
T Consensus 161 --------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 161 --------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred --------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 1235689999999999998632 23344454443
No 264
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.077 Score=54.16 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc--CCCeEEEEe
Q 008748 136 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER--GIPSTLGVL 208 (555)
Q Consensus 136 ~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r--g~~v~~~~~ 208 (555)
+..|..++... .+.+||+-|.|+|+++.+++.. .+...|+...-..++..++ ++. +..+.+.+-
T Consensus 94 ia~I~~~L~i~--------PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hr 164 (314)
T KOG2915|consen 94 IAMILSMLEIR--------PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHR 164 (314)
T ss_pred HHHHHHHhcCC--------CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEe
Confidence 44566676643 2358999999999999998864 4556666433222232222 223 446788888
Q ss_pred CCCCCCCC--CCCccEEEecccccccccchHHHHHHHHhhcCCCc-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 209 GTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 209 d~~~Lp~~--d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
|....-|. +..+|.|+-- ++.|-.++--++.+||-+| +|+-.+|-. +.-++--+++.+.||..
T Consensus 165 DVc~~GF~~ks~~aDaVFLD------lPaPw~AiPha~~~lk~~g~r~csFSPCI--------EQvqrtce~l~~~gf~~ 230 (314)
T KOG2915|consen 165 DVCGSGFLIKSLKADAVFLD------LPAPWEAIPHAAKILKDEGGRLCSFSPCI--------EQVQRTCEALRSLGFIE 230 (314)
T ss_pred ecccCCccccccccceEEEc------CCChhhhhhhhHHHhhhcCceEEeccHHH--------HHHHHHHHHHHhCCCce
Confidence 86655543 5779988732 2344567777888999877 555444331 33345566788889965
Q ss_pred EE
Q 008748 286 VS 287 (555)
Q Consensus 286 v~ 287 (555)
+.
T Consensus 231 i~ 232 (314)
T KOG2915|consen 231 IE 232 (314)
T ss_pred EE
Confidence 53
No 265
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.13 E-value=0.024 Score=55.96 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcCC---CccccCChhhhhHHHHHHHHHcC----CCeEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERG----IPSTL 205 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~---V~~vdis~~dls~a~i~~A~~rg----~~v~~ 205 (555)
..+.+.+++.+. .++++||.||-|-|.....+.++. -+.++..+ ...+.-++.+ .++.+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-----~V~krmr~~gw~ek~nVii 153 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-----DVLKRMRDWGWREKENVII 153 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH-----HHHHHHHhcccccccceEE
Confidence 445556666654 345699999999998888877652 22333333 2223333333 23444
Q ss_pred EEeCCCC-CC-CCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 206 GVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 206 ~~~d~~~-Lp-~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
..+--++ ++ ++++.||-|+--. .-++-++...+.+.+.|+|||+|.|-+..
T Consensus 154 l~g~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 154 LEGRWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred EecchHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 4443222 22 5688899999433 23666777778999999999999998743
No 266
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.07 E-value=0.005 Score=59.62 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=75.9
Q ss_pred eeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHH
Q 008748 118 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~ 194 (555)
.+..|.+ ....+..++..+.+-.++... . -...++||+-||+|.++...+.+ .|+.+|.+...+..-..+
T Consensus 12 ~l~~p~~-~~~RPT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N 84 (183)
T PF03602_consen 12 KLKTPKG-DNTRPTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKN 84 (183)
T ss_dssp EEE-TT---TS-SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHH
T ss_pred EecCCCC-CCcCCCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHH
Confidence 3444433 234455566666666666532 0 12368999999999999988765 688888888766544433
Q ss_pred HHHHcCC--CeEEEEeCCC-CCC---CCCCCccEEEecccccccccc--hHHHHHHHH--hhcCCCcEEEEEcCC
Q 008748 195 FALERGI--PSTLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSPE 259 (555)
Q Consensus 195 ~A~~rg~--~v~~~~~d~~-~Lp---~~d~sFDlVv~s~~~l~~~~d--~~~~L~el~--RvLkPGG~lvis~P~ 259 (555)
. ..-+. .+.+...|.. .+. .....||+|+.-- +|... ...++..+. .+|+++|.+++-...
T Consensus 85 ~-~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 85 L-EKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp H-HHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred H-HHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 3 33332 3677777732 222 2457899999542 33333 255677766 799999999986533
No 267
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.031 Score=59.68 Aligned_cols=105 Identities=22% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----C-CccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCC--CCC-CCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----D-IIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP--YPS-RSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~-V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp--~~d-~sFDlVv 224 (555)
.+.+|||+.++.|+=+.+|++. . |+++|+++.=+..-. ......|.. +.....|...++ .+. +.||.|+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 4479999999999877777753 2 478888775443333 333344544 466777766554 222 3599999
Q ss_pred e----ccc-ccc------cccc----------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 C----SRC-RID------WLQR----------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 ~----s~~-~l~------~~~d----------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
. +.. ++. |... ...+|....++|||||.++.++-..
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 6 211 111 1111 1348999999999999999988554
No 268
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.03 E-value=0.022 Score=57.98 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
....||+||-|||.++..|++. .|+++++++.++.+-........ ....++.++|....++| .||.++++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 3468999999999999999874 89999999988866553332111 12357788887777665 59999964
No 269
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.03 E-value=0.009 Score=58.11 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=60.0
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhcc-----ccchhcccccCCCCCCCccchhhccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRG-----LIGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rg-----l~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.=.+|+|++||.|.++.++... +. --+++-++.. ..+..+-++. +--+..|-.+ .+.-+.+||+|+....+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeee
Confidence 3458999999999998887543 21 0123333322 3334443332 1111222222 22224589999987766
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.. -.+...++-++-++|+|||++++-+
T Consensus 117 ~~----~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RN----VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 52 2357889999999999999999854
No 270
>PRK14968 putative methyltransferase; Provisional
Probab=96.01 E-value=0.01 Score=56.32 Aligned_cols=117 Identities=15% Similarity=0.245 Sum_probs=74.5
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH---------hhccccchhcccccCCCCCCCccchhhccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII---------YDRGLIGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i---------~~rgl~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
-..|+|++||.|.++..|.... -+|+-++-. +.+... -+||+.-+-+|+.+.+.. .+||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 3479999999999999987762 355555543 444333 122344455677776543 3799985544
Q ss_pred cccccc-----------------cCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccc
Q 008748 470 VFSEIE-----------------ERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 521 (555)
Q Consensus 470 ~~s~~~-----------------~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~ 521 (555)
-|.... .....+..++-++.|+|+|||.+++-- +..-..++.+.+....|+.
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCee
Confidence 332100 001225678999999999999887642 2233567888888888876
No 271
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.98 E-value=0.056 Score=53.33 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=75.0
Q ss_pred EEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeC-CCCCCCCCCCccEEEeccccccc
Q 008748 159 VLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLG-TKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 159 VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d-~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
|.||||--|++..+|++. .++++|+++.-+..+..+.+... ...+.+..+| +..++-. +..|.|+.+.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~-e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG-EDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG-G---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC-CCCCEEEEecCCHH-
Confidence 689999999999999975 68899999988877776655433 2357788887 4444422 23788887653211
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
-....|.+....++....|++. |.. ....+.+.+.+.||.++.+.-.
T Consensus 79 --lI~~ILe~~~~~~~~~~~lILq-P~~---------~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 79 --LIIEILEAGPEKLSSAKRLILQ-PNT---------HAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp --HHHHHHHHTGGGGTT--EEEEE-ESS----------HHHHHHHHHHTTEEEEEEEEE
T ss_pred --HHHHHHHhhHHHhccCCeEEEe-CCC---------ChHHHHHHHHHCCCEEEEeEEE
Confidence 1133566666667666677763 331 2457889999999999876544
No 272
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=95.93 E-value=0.0026 Score=61.98 Aligned_cols=114 Identities=16% Similarity=0.346 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC--CceEEEecccCC---CCchh----HHhhccccchhc
Q 008748 379 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM---SARLK----IIYDRGLIGTVH 449 (555)
Q Consensus 379 ~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~---~~~l~----~i~~rgl~g~~~ 449 (555)
.|=++.+ |...|...+...+|+++++.+|+-|-|.+.|... .+.++-++|..- ...|. |-+.++
T Consensus 24 ~~YE~~K-~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~------ 96 (201)
T PF05401_consen 24 SWYERRK-YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQA------ 96 (201)
T ss_dssp -HHHHHH-HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES------
T ss_pred CHHHHHH-HHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEEC------
Confidence 4545443 3233333478899999999999999999999754 566666655421 11111 111122
Q ss_pred ccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 450 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 450 ~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|-.+..+ +.+|||||.+.+|--+. +.=.+..++-.|...|+|||.+|+-.
T Consensus 97 dvp~~~P--~~~FDLIV~SEVlYYL~-~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 97 DVPEFWP--EGRFDLIVLSEVLYYLD-DAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -TTT-----SS-EEEEEEES-GGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCCC--CCCeeEEEEehHhHcCC-CHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1122222 46999999999887432 11235667888899999999999753
No 273
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.90 E-value=0.046 Score=63.52 Aligned_cols=117 Identities=16% Similarity=0.188 Sum_probs=71.8
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc-----hhcccccCCCCCCCccchhhccc-
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG-----TVHDWCESFSTYPRTYDLLHAWK- 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g-----~~~~~ce~~~typrtydl~h~~~- 469 (555)
++|+|+.||.|+|+.++.....- .|+-++.. .-|.+.-+ -|+-+ +-.|..+-+....++||+|=.+-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 58999999999999888754321 35556643 33433221 23310 12233222222367899986542
Q ss_pred ----------cccccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCcccee
Q 008748 470 ----------VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL 523 (555)
Q Consensus 470 ----------~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~ 523 (555)
+|+. .. ....++-..=|+|+|||.+++-....-+....+.+..-.+++++
T Consensus 618 ~f~~~~~~~~~~~~-~~---~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~ 677 (702)
T PRK11783 618 TFSNSKRMEDSFDV-QR---DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEE 677 (702)
T ss_pred CCCCCCccchhhhH-HH---HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEE
Confidence 2221 11 24567777789999999999876666666667777777888753
No 274
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.90 E-value=0.054 Score=49.89 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCCcHHHHHHhc-----C---CCccccCChhhhhHHHHHHHHHcC----CCeEEEEeCCCCCCCCCCCcc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLS-----H---DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFE 221 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~-----~---~V~~vdis~~dls~a~i~~A~~rg----~~v~~~~~d~~~Lp~~d~sFD 221 (555)
....+|+|+|||.|+++..|+. . .|+++|..+..+..+. +.+++.+ ....+...+...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 4457899999999999999887 3 7888888876554333 3343333 223344443332221 35567
Q ss_pred EEEecccccccccchHH-HHHHHHhhcCCCcEEEEEcCCC
Q 008748 222 LAHCSRCRIDWLQRDGI-LLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 222 lVv~s~~~l~~~~d~~~-~L~el~RvLkPGG~lvis~P~~ 260 (555)
+++ .+|-..+... +|+-..+ ++-.+++..|=-
T Consensus 102 ~~v----gLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 102 ILV----GLHACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEE----EeecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 777 3555555533 4444444 666666665543
No 275
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.81 E-value=0.017 Score=61.52 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=39.6
Q ss_pred EEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC
Q 008748 158 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 212 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~ 212 (555)
.|||+-||+|.|+..|++. .|+|+++.+.++..|..+.....-.++.|..+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 7999999999999999984 899999999988777755544444567888776543
No 276
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.79 E-value=0.051 Score=58.49 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=33.4
Q ss_pred CCCCCCccEEEecccccccccch--------------------------------------HHHHHHHHhhcCCCcEEEE
Q 008748 214 PYPSRSFELAHCSRCRIDWLQRD--------------------------------------GILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 214 p~~d~sFDlVv~s~~~l~~~~d~--------------------------------------~~~L~el~RvLkPGG~lvi 255 (555)
-||+++.++++|++ ++||.... ..+|+-=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~-slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAF-SLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeec-cceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 38899999999998 59998521 1133444567899999999
Q ss_pred EcCCC
Q 008748 256 SSPEA 260 (555)
Q Consensus 256 s~P~~ 260 (555)
+....
T Consensus 236 ~~~Gr 240 (386)
T PLN02668 236 VCLGR 240 (386)
T ss_pred EEecC
Confidence 87553
No 277
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.78 E-value=0.0048 Score=61.69 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=58.0
Q ss_pred eeEeeccCCcchhhhhccCC---CceEEEecccCCC-CchhHHhhc----ccc----chhcccccCCCCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARLKIIYDR----GLI----GTVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~---~~wvmnv~p~~~~-~~l~~i~~r----gl~----g~~~~~ce~~~typrtydl~h~~ 468 (555)
.+|+|++||.|.++..|.+. |-+ +|+-++-. +-|...-++ |.. =+..|.++ ++ . ..+|++.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEeee
Confidence 47999999999998877652 332 35555532 333332221 211 11223332 11 1 358888776
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
..+..+... +...+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~~~--~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPE--DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHH--HHHHHHHHHHHhcCCCeEEEEeec
Confidence 665532111 246789999999999999999874
No 278
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.68 E-value=0.0063 Score=61.36 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=58.2
Q ss_pred eeEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhHHhhc----cc---cchhcccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~i~~r----gl---~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
..|+|++||.|..+.+|.. .|-| .|+=++.. .-|...-+| |+ +-+++.-.+.++ + ..||++-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I-ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C-CCCCEEehhh
Confidence 4699999999999877754 3443 35555532 444333222 22 222221122222 1 2488877665
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.+..+.. -....++-||-|+|+|||.+++.|.
T Consensus 134 ~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEP--SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5553321 2356899999999999999999873
No 279
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=95.68 E-value=0.018 Score=56.42 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=58.8
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc------cchhcccccCCCCCCCccchhhcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL------IGTVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl------~g~~~~~ce~~~typrtydl~h~~ 468 (555)
--+|+|++||.|.++..|.+... .|+=++.. ..+...-+ -|+ .+-..++.. ..|.+||+|.+.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---KGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---CCCCCccEEEeh
Confidence 34899999999999887754321 23333322 22222221 122 122222321 225789999998
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+++... -+...+|-++.++|+|||.+++.+
T Consensus 120 ~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 120 EVLEHV----PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hHHHhC----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 877633 247889999999999999999875
No 280
>PRK06202 hypothetical protein; Provisional
Probab=95.61 E-value=0.028 Score=55.82 Aligned_cols=103 Identities=13% Similarity=0.211 Sum_probs=64.5
Q ss_pred CCCcceeEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhHHhhccc-cc--hhcccccCCCCCCCccchhhcc
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIYDRGL-IG--TVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~i~~rgl-~g--~~~~~ce~~~typrtydl~h~~ 468 (555)
...+-..|+|++||.|.++..|.+ +.-...+|+-+|-. +-+....++.- -+ ...-=++.++.-+.+||+|-++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 334556899999999999877753 11122467777754 55655544421 11 1111134445446799999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+|..+... .+..+|-||-|++| |.++|.|
T Consensus 137 ~~lhh~~d~--~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLDDA--EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCChH--HHHHHHHHHHHhcC--eeEEEec
Confidence 888744321 24568999999999 5666655
No 281
>PRK05785 hypothetical protein; Provisional
Probab=95.61 E-value=0.018 Score=57.44 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCC
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFS 456 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~ 456 (555)
..|++.+-...... +.. -.+|+|++||.|-++.+|.+.- --+|+-+|-. +-|.+.-+++ ...+.-.|.++
T Consensus 35 ~~wr~~~~~~l~~~---~~~--~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp 105 (226)
T PRK05785 35 VRWRAELVKTILKY---CGR--PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALP 105 (226)
T ss_pred HHHHHHHHHHHHHh---cCC--CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCC
Confidence 55877654422211 112 2589999999999998887652 1256667754 5555544443 22344456665
Q ss_pred CCCCccchhhccccccccccCCCChhhhhhhhcccccCCc
Q 008748 457 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEG 496 (555)
Q Consensus 457 typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g 496 (555)
.=..+||+|-+...+-. --+.+..|-||-|+|||.+
T Consensus 106 ~~d~sfD~v~~~~~l~~----~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFALHA----SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChhhc----cCCHHHHHHHHHHHhcCce
Confidence 44579999998775542 2357889999999999954
No 282
>PTZ00146 fibrillarin; Provisional
Probab=95.53 E-value=0.0072 Score=62.60 Aligned_cols=98 Identities=13% Similarity=0.221 Sum_probs=58.8
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhc-cccchhcccccCCCCCC---Cccchh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYP---RTYDLL 465 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~r-gl~g~~~~~ce~~~typ---rtydl~ 465 (555)
|..+. +|||++||.|+|...|.+. .|+.+-+-|....+-+.+.-+| +++-+..|-+.+. .|+ -++|+|
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVI 206 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEE
Confidence 45553 7999999999998888653 3555433322111234444343 5666777766432 222 256666
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
|+...+. =....+++|+.|+|+|||+++|.
T Consensus 207 -----~~Dva~p-dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 -----FADVAQP-DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -----EEeCCCc-chHHHHHHHHHHhccCCCEEEEE
Confidence 4432211 12335677999999999999983
No 283
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.51 E-value=0.025 Score=55.76 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=66.4
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC--CchhHHhhccccchhccccc---------CCCCCCCccchhhc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS--ARLKIIYDRGLIGTVHDWCE---------SFSTYPRTYDLLHA 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~--~~l~~i~~rgl~g~~~~~ce---------~~~typrtydl~h~ 467 (555)
..|+|++||.|+|+..|.+. +-- .|+-++-. +.+ .|+.-+-.|..+ .+. +.+||+|-+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~--~V~aVDi~~~~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~S 123 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKG--RVIACDILPMDPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVMS 123 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCc--eEEEEecccccCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEec
Confidence 37999999999997665432 100 22222211 111 122222223222 122 357888887
Q ss_pred cccccccccC-------CCChhhhhhhhcccccCCceEEEe-----cchhHHHHHHHHHhhcCccceecccccccccCCC
Q 008748 468 WKVFSEIEER-------GCSFEDLLIEMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALSS 535 (555)
Q Consensus 468 ~~~~s~~~~~-------~c~~~~~~~e~drilrp~g~~i~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 535 (555)
+......... -+..+.+|-|+=|+|+|||.+++. +..+++.+++......+. .-+..+ -..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~------~Kp~ss-r~~ 196 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV------RKPDSS-RAR 196 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE------ECCccc-ccc
Confidence 5422100000 011357899999999999999994 334444444443333332 222221 224
Q ss_pred CCceEEEEEe
Q 008748 536 SEERVLIAKK 545 (555)
Q Consensus 536 ~~~~~l~~~k 545 (555)
+.|..+||..
T Consensus 197 s~e~~~~~~~ 206 (209)
T PRK11188 197 SREVYIVATG 206 (209)
T ss_pred CceeEEEeec
Confidence 6788998864
No 284
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.48 E-value=0.068 Score=56.55 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=95.1
Q ss_pred ceeeeCCCCCCCCccHH-HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHH
Q 008748 117 EKINFPGGGTHFHDGAD-KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHEN 191 (555)
Q Consensus 117 e~~~F~~~g~~f~~~a~-~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a 191 (555)
+..-|.+|+-+|...-+ +|.+.+.- + .+..-...++||=+|.|.|.-++.|.+. +|+-+|++|.+++-+
T Consensus 256 d~rLYldG~LQfsTrDe~RYhEsLV~--p----als~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela 329 (508)
T COG4262 256 DLRLYLDGGLQFSTRDEYRYHESLVY--P----ALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELA 329 (508)
T ss_pred ceEEEEcCceeeeechhhhhhheeee--c----ccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHh
Confidence 45667777777775443 34433221 1 0111123478999999999999999874 688889998888655
Q ss_pred HHHHHHH---c----CCCeEEEEeCCCCC-CCCCCCccEEEecccccccccc-----hHHHHHHHHhhcCCCcEEEEEcC
Q 008748 192 QIQFALE---R----GIPSTLGVLGTKRL-PYPSRSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 192 ~i~~A~~---r----g~~v~~~~~d~~~L-p~~d~sFDlVv~s~~~l~~~~d-----~~~~L~el~RvLkPGG~lvis~P 258 (555)
..+.+.. . .+++.++..|+.+. --....||.|+.-. .-.-.+. -..+..-+.|.|+++|.+++...
T Consensus 330 ~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 330 SHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred hhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 4222221 1 23466666664332 23345899998532 0100011 13477888899999999999665
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 259 EAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 259 ~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
..|... +.+-.+.+-++++||.+.
T Consensus 409 s~y~tp----~vfw~i~aTik~AG~~~~ 432 (508)
T COG4262 409 SPYFTP----RVFWRIDATIKSAGYRVW 432 (508)
T ss_pred CCccCC----ceeeeehhHHHhCcceee
Confidence 443221 122245666788998665
No 285
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.45 E-value=0.15 Score=49.60 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=80.1
Q ss_pred eeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHH
Q 008748 118 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~ 194 (555)
.+.+|.+ ....+-.++..+.+-.++... .-.+.++||+=+|+|.++...+.+ .++.+|.+.........+
T Consensus 13 ~L~~p~~-~~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N 85 (187)
T COG0742 13 KLKTPDG-PGTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN 85 (187)
T ss_pred cccCCCC-CCcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH
Confidence 4445443 245566677777777776531 123468999999999999998875 678888877665444433
Q ss_pred HHHHcC--CCeEEEEeCCCCC-CCCCC--CccEEEecccccccc-cchHHHHH--HHHhhcCCCcEEEEEcC
Q 008748 195 FALERG--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRIDWL-QRDGILLL--ELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 195 ~A~~rg--~~v~~~~~d~~~L-p~~d~--sFDlVv~s~~~l~~~-~d~~~~L~--el~RvLkPGG~lvis~P 258 (555)
....+ .+..+...|+... +-... .||+|+.-- ..+.. -+....+. +-...|+|+|.+++-..
T Consensus 86 -~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 86 -LKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred -HHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 33334 5667777775432 22222 499999532 22211 11122222 35578999999999554
No 286
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.33 E-value=0.021 Score=59.36 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=47.0
Q ss_pred CEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCC--CccEEEecc
Q 008748 157 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSR--SFELAHCSR 227 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~--sFDlVv~s~ 227 (555)
..+||.+||.|..+..+++. .|+|+|.++.++..+...... ..++.+...+..++. .+++ ++|.|++-.
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEECC
Confidence 58999999999999999864 588888888777655533322 345677777765543 1112 678777643
No 287
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.55 Score=46.21 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC---CCCCCCccEEEec
Q 008748 154 GNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYPSRSFELAHCS 226 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L---p~~d~sFDlVv~s 226 (555)
.+..+||=+|+-+|....++++ ..+.++++++....+ .+..|.+| .++.-...|+..- ..--+..|+|++-
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re-Ll~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE-LLDVAEKR-PNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH-HHHHHHhC-CCceeeecccCCcHHhhhhcccccEEEEe
Confidence 3456899999999988887775 258899999987644 44677766 3444455565321 1112458988853
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCC-CCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~-~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
-+ -....+.+..++...||+||+++++.... .....+..+.+++-.+.+++.+|++.+..+.
T Consensus 153 VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~L 215 (231)
T COG1889 153 VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDL 215 (231)
T ss_pred cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEecc
Confidence 21 11222457889999999999888876442 2233444568887777888889999877665
No 288
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.30 E-value=0.018 Score=57.10 Aligned_cols=95 Identities=14% Similarity=0.263 Sum_probs=61.7
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchh--cccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTV--HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~--~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
..|+|++||.|.++..|.+.. .+|+=++.. +.+...-++ |+-..+ .++.+-....+-+||+|.+.++|..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 359999999999998887643 355555543 333332222 331112 2232221123368999999888773
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
. -+...+|-++.|+|+|||.+++.+
T Consensus 127 ~----~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 V----PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred c----CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 3 246789999999999999999874
No 289
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.29 E-value=0.02 Score=55.04 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=66.5
Q ss_pred eeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhccccchhcccccCC-------CCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESF-------STYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~~-------~typrtydl~h~~ 468 (555)
.+|+|++||.|+++.++... .|+..=.-|. .. + .|+--+..|..+.. .+-+.+||++=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~-----~~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM-----KP--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc-----cc--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 47999999999997766432 2444333221 10 0 12222223443321 0113468876654
Q ss_pred cc------ccc-cccCCCChhhhhhhhcccccCCceEEEe----c-chhHHHHHHHHHhhcCccceecccccccccCCCC
Q 008748 469 KV------FSE-IEERGCSFEDLLIEMDRMLRPEGFVIIR----D-KSSIINYIRKFITALKWDGWLSEVEPRIDALSSS 536 (555)
Q Consensus 469 ~~------~s~-~~~~~c~~~~~~~e~drilrp~g~~i~r----d-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 536 (555)
+. .+. .....+.+..+|-++-|+|+|||.+++- + -.+++.+++.. + |.+.+.-. .-....+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~---~-~~~~~~~~---~~~~~~~ 178 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL---F-EKVKVTKP---QASRKRS 178 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh---h-ceEEEeCC---CCCCccc
Confidence 32 110 0001123468899999999999999983 2 12444444442 2 44432211 1112235
Q ss_pred CceEEEEE
Q 008748 537 EERVLIAK 544 (555)
Q Consensus 537 ~~~~l~~~ 544 (555)
.|+.|||.
T Consensus 179 ~~~~~~~~ 186 (188)
T TIGR00438 179 AEVYIVAK 186 (188)
T ss_pred ceEEEEEe
Confidence 78999985
No 290
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.22 E-value=0.04 Score=55.89 Aligned_cols=135 Identities=20% Similarity=0.352 Sum_probs=77.7
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc---cccc----hhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR---GLIG----TVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r---gl~g----~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++.+|... |-+ +|+-++.. ..+.+.-++ ++.. +-.|+-+.+. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 46999999999999888643 222 34444432 333332222 2111 1234434332 3689999765333
Q ss_pred cccc------c----CC---------C---ChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccceecccccc
Q 008748 472 SEIE------E----RG---------C---SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 529 (555)
Q Consensus 472 s~~~------~----~~---------c---~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~ 529 (555)
.... . .. - .+..++-++-++|+|||++++--...--..+++++....+.. +...
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~-v~~~--- 261 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFAD-VETR--- 261 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCce-eEEe---
Confidence 2100 0 00 0 124567778899999999999655555667888888766652 1111
Q ss_pred cccCCCCCceEEEEEe
Q 008748 530 IDALSSSEERVLIAKK 545 (555)
Q Consensus 530 ~~~~~~~~~~~l~~~k 545 (555)
.+ + .+.+++++++|
T Consensus 262 ~d-~-~~~~r~~~~~~ 275 (275)
T PRK09328 262 KD-L-AGRDRVVLGRR 275 (275)
T ss_pred cC-C-CCCceEEEEEC
Confidence 11 2 36789998865
No 291
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.22 Score=53.40 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=71.1
Q ss_pred CEEEEECCCCcHHHHHHhcC--C-----------------------------------------CccccCChhhhhHHHH
Q 008748 157 RNVLDVGCGVASFGAYLLSH--D-----------------------------------------IIAMSLAPNDVHENQI 193 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~-----------------------------------------V~~vdis~~dls~a~i 193 (555)
..++|-=||+|.+....|-. + +.|+|+++.++..|.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 57999999999988765532 1 559999999887666
Q ss_pred HHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEecccccccccc------h----HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 194 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR------D----GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 194 ~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d------~----~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..|+..|.. +.|.++|+..++-+-+.+|+|+|+- +|-.. . ..+.+.+.+.++--+.++|++..
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 455666654 8999999988865447899999863 23211 1 23556777888888888887754
No 292
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.18 E-value=0.013 Score=59.60 Aligned_cols=95 Identities=21% Similarity=0.153 Sum_probs=55.1
Q ss_pred eeEeeccCCcchhhhhccC--CCceEEEecccCC-CCchhHHhh----ccccc--hh-cccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKD--KDVWVMNVAPVRM-SARLKIIYD----RGLIG--TV-HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~--~~~wvmnv~p~~~-~~~l~~i~~----rgl~g--~~-~~~ce~~~typrtydl~h~~~~ 470 (555)
.+|+|++||.|..+..+.. .+-. .|+=++. +..+...-+ .|+-. .. .|. +.++.-..+||+|+++.+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~--~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG--KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC--EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 3899999999875432221 1211 2333443 233443322 23211 01 122 223323469999998877
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|... -+...++-|+=|+|||||.+++.|
T Consensus 156 ~~~~----~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLS----PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCC----CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7522 135789999999999999999864
No 293
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.16 E-value=0.018 Score=57.31 Aligned_cols=117 Identities=20% Similarity=0.352 Sum_probs=72.5
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----Hhhcccc--chhc-ccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLI--GTVH-DWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl~--g~~~-~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.|+.+|... |-+ +|+-++.. ..+.. +-..|+- -+++ |+-+.+. +.+||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 36999999999999998754 222 45545432 33332 2223441 1222 3323332 3689999876544
Q ss_pred cccc-----cCCCC-----------------hhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccc
Q 008748 472 SEIE-----ERGCS-----------------FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 472 s~~~-----~~~c~-----------------~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~ 521 (555)
.... ..... ...++-++-|+|+|||.+++........++++++....++.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 3110 00000 13567789999999999999877777788899998877764
No 294
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.14 E-value=0.05 Score=53.66 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=56.3
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhhccccchhcccccCCCCCCCccchhhccccccccccCC
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 478 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~ 478 (555)
--.|-|||||=+-.|+++.+. .|.-...|..... -+.-|= ...|-=.-+.|+ |--++|.+..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~---Vtacdi----------a~vPL~~~svDv--~VfcLSLMGT-- 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR---VTACDI----------ANVPLEDESVDV--AVFCLSLMGT-- 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SSTT---EEES-T----------TS-S--TT-EEE--EEEES---SS--
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCCC---EEEecC----------ccCcCCCCceeE--EEEEhhhhCC--
Confidence 457999999999999998643 4555555544321 000000 001111246776 3456675444
Q ss_pred CChhhhhhhhcccccCCceEEEecchhHHHHHH---HHHhhcCccc
Q 008748 479 CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIR---KFITALKWDG 521 (555)
Q Consensus 479 c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~---~~~~~~~w~~ 521 (555)
+..+.+.|--|||||||.++|-+-..-+..++ +.++++..+.
T Consensus 136 -n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 136 -NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKL 180 (219)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEE
T ss_pred -CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeE
Confidence 49999999999999999999987666655555 4455666766
No 295
>PRK13699 putative methylase; Provisional
Probab=95.01 E-value=0.059 Score=53.92 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=50.1
Q ss_pred EEEeCCCCC--CCCCCCccEEEecccc-c--c-----------cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhH
Q 008748 205 LGVLGTKRL--PYPSRSFELAHCSRCR-I--D-----------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 268 (555)
Q Consensus 205 ~~~~d~~~L--p~~d~sFDlVv~s~~~-l--~-----------~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~ 268 (555)
+..+|..++ .++++++|+|+..--- + . +.+-....+.|+.|+|||||.+++.....
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-------- 75 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-------- 75 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc--------
Confidence 445554332 4667888888875210 0 0 00112458899999999999988643211
Q ss_pred HHHHHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 269 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 269 ~~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
....+...+++.||.+. ...+|.|+.
T Consensus 76 -~~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 76 -RVDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred -cHHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 12345566788999865 445899874
No 296
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=94.91 E-value=0.024 Score=55.05 Aligned_cols=117 Identities=12% Similarity=0.205 Sum_probs=68.9
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----HhhccccchhcccccCC----CCCCC-ccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESF----STYPR-TYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl~g~~~~~ce~~----~typr-tydl~h~~~ 469 (555)
..|+|++||.|.|+.+|... |- .||+=++-. .-+.. +-..|+-.+..=-+... ..+|. ++|.++.+
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~- 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN- 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE-
Confidence 57999999999999888753 32 245555432 22222 22334421111111111 11343 88888754
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcC-ccc
Q 008748 470 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK-WDG 521 (555)
Q Consensus 470 ~~s~~------~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~-w~~ 521 (555)
|+.. .+++.....+|-++-|+|+|||.+++. |.....+.+.+.+...- |+.
T Consensus 95 -~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 -FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred -CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 2211 124566688999999999999999986 66656666666555432 543
No 297
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.86 E-value=0.055 Score=57.32 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=39.1
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC--------------------CCccccCChhhhhHHHHHHHHH-----cCCCeEE--E
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTL--G 206 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~--------------------~V~~vdis~~dls~a~i~~A~~-----rg~~v~~--~ 206 (555)
.+.-+|+|+||.+|..+..+.+. .|.--|+-..|.+.-....... ...++.. +
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44568999999999877665531 1233455555553332211111 1223222 1
Q ss_pred EeCCCCCCCCCCCccEEEeccccccccc
Q 008748 207 VLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 207 ~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
-++...--||+++.|+++|++ ++||..
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEec-hhhhcc
Confidence 233444448899999999888 599874
No 298
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.043 Score=60.29 Aligned_cols=86 Identities=19% Similarity=0.330 Sum_probs=56.8
Q ss_pred ceeeeCCCCCCCCc---cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHH
Q 008748 117 EKINFPGGGTHFHD---GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHEN 191 (555)
Q Consensus 117 e~~~F~~~g~~f~~---~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a 191 (555)
-+|+|+.+. .|+. .++.....+.+.+.+. ....+||+-||||.++..++++ .|+|+++++.++..|
T Consensus 351 ltF~iSp~A-FFQ~Nt~~aevLys~i~e~~~l~--------~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA 421 (534)
T KOG2187|consen 351 LTFRISPGA-FFQTNTSAAEVLYSTIGEWAGLP--------ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDA 421 (534)
T ss_pred eEEEECCch-hhccCcHHHHHHHHHHHHHhCCC--------CCcEEEEEeecCCceehhhhccccceeeeecChhhcchh
Confidence 456665443 3332 2333444455554432 2368999999999999999985 899999999998877
Q ss_pred HHHHHHHcCCCeEEEEeCCC
Q 008748 192 QIQFALERGIPSTLGVLGTK 211 (555)
Q Consensus 192 ~i~~A~~rg~~v~~~~~d~~ 211 (555)
..+.....-.++.|+++-++
T Consensus 422 ~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 422 EKNAQINGISNATFIVGQAE 441 (534)
T ss_pred hhcchhcCccceeeeecchh
Confidence 75544333346788887443
No 299
>PRK04266 fibrillarin; Provisional
Probab=94.81 E-value=0.045 Score=54.79 Aligned_cols=138 Identities=14% Similarity=0.257 Sum_probs=68.1
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHH----hhc-cccchhcccccCC--CCCCCccchh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDR-GLIGTVHDWCESF--STYPRTYDLL 465 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i----~~r-gl~g~~~~~ce~~--~typrtydl~ 465 (555)
+..+. .|||.+||.|++...|.+. + -=.|+-++.. .-|..+ -++ ++.-+..|-.++. ...+.++|.|
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 45553 6999999999999888753 1 0023333332 222222 222 2333333433321 1123456664
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEe------c----chhHHHHHHHHHhhcCccceecccccccccCCC
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR------D----KSSIINYIRKFITALKWDGWLSEVEPRIDALSS 535 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r------d----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 535 (555)
|+..... =....+|-|+-|+|+|||.++|. | ......+..+.+..-..+. +...+ -.|+.
T Consensus 146 -----~~d~~~p-~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~-i~~~~--l~p~~- 215 (226)
T PRK04266 146 -----YQDVAQP-NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEI-LEVVD--LEPYH- 215 (226)
T ss_pred -----EECCCCh-hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeE-EEEEc--CCCCc-
Confidence 2211110 01123466999999999999992 2 2233334445565544544 12222 22332
Q ss_pred CCceEEEEEec
Q 008748 536 SEERVLIAKKK 546 (555)
Q Consensus 536 ~~~~~l~~~k~ 546 (555)
..+-.+|++|+
T Consensus 216 ~~h~~~v~~~~ 226 (226)
T PRK04266 216 KDHAAVVARKK 226 (226)
T ss_pred CCeEEEEEEcC
Confidence 24566666653
No 300
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=94.79 E-value=0.025 Score=46.34 Aligned_cols=95 Identities=22% Similarity=0.325 Sum_probs=57.3
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh---hccc---cchh-cccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY---DRGL---IGTV-HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~---~rgl---~g~~-~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
+|+|++||.|+++..+...+ ...++-++.. +.+...- ..+. +=.+ .|+.+....-+.+||++.+++.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 48999999999998887632 2233333322 2221111 1111 1111 2222222123568999999998873
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEe
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
... ....++-.+.+.|||||.+++.
T Consensus 79 ~~~---~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVE---DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhh---HHHHHHHHHHHHcCCCCEEEEE
Confidence 111 3678888889999999999986
No 301
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.78 E-value=0.019 Score=56.35 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=50.7
Q ss_pred eeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhccccc---hh-cccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIG---TV-HDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~rgl~g---~~-~~~ce~~~typrtydl~h~~~~~ 471 (555)
..|+|++||.|.+++.|... .|.-+-+.|.-....-.-+...|+-+ ++ .|-.+.++. ..+||.|.++..+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 46999999999998776531 23333322221100001223345422 22 244444433 3689999877654
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.. +-=|+-|.|+|||.+++-
T Consensus 153 ~~----------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 ST----------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ch----------hhHHHHHhcCcCcEEEEE
Confidence 32 223566899999999884
No 302
>PRK06922 hypothetical protein; Provisional
Probab=94.73 E-value=0.015 Score=66.12 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=60.3
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cc-cchhcccccCCCC--CCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVHDWCESFST--YPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl-~g~~~~~ce~~~t--yprtydl~h~~~~~ 471 (555)
.+|+|++||.|.++.+|... |- .+|+-+|-+ +.|...-++ |. +-+.+.=+..++. =|.+||++..+.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57999999999998777532 21 345555543 334333222 11 1111111233332 25789999877654
Q ss_pred cccc------cC---CCChhhhhhhhcccccCCceEEEecc
Q 008748 472 SEIE------ER---GCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 472 s~~~------~~---~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
-.+. .. .-.+..+|-|+-|+|+|||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3211 11 12467889999999999999999874
No 303
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.66 E-value=0.045 Score=52.11 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=44.3
Q ss_pred EEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCC--CCCCC-ccEEEec
Q 008748 158 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 226 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp--~~d~s-FDlVv~s 226 (555)
.|+|+.||.|..+..+|.. .|+++|+++.-+.-++ ..|+--|. ++.++.+|..++. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999985 6999999988775555 44444453 5889999954331 11122 8999974
No 304
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.56 E-value=0.039 Score=55.69 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhccc----cc--hhcc
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL----IG--TVHD 450 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rgl----~g--~~~~ 450 (555)
..|++..-.- +. +. .=-+|+|..||+|=+|..+.+.-- --.|+-+|- ++-|.+--+|-- .+ ..+-
T Consensus 37 ~~Wr~~~i~~---~~--~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 37 RLWRRALISL---LG--IK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred HHHHHHHHHh---hC--CC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 6787755432 21 11 234799999999999999975321 334555553 366776665543 22 1233
Q ss_pred cccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 451 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 451 ~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
=-|.++.-..|||++=.+.-+-... ++.-.|=||=|+|+|||.+++=|.
T Consensus 109 dAe~LPf~D~sFD~vt~~fglrnv~----d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 109 DAENLPFPDNSFDAVTISFGLRNVT----DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred chhhCCCCCCccCEEEeeehhhcCC----CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 3467777778999988766554222 488999999999999998886543
No 305
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.54 E-value=0.052 Score=52.60 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=61.8
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-----CCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-----g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+.|+|+|+|.++...+.. +|++++.+|.-. ..|.+. ..+..++++|+....|. ..|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~fe--~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDFE--NADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEeccccccccc--ccceeHHHHhh
Confidence 47999999999887666653 788888877543 333333 23578899999888883 57999985310
Q ss_pred ccc-ccchHHHHHHHHhhcCCCcEEE
Q 008748 230 IDW-LQRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 230 l~~-~~d~~~~L~el~RvLkPGG~lv 254 (555)
-.. .+....++..+...||-.|.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 111 1222446777777888888877
No 306
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.53 E-value=0.025 Score=60.03 Aligned_cols=115 Identities=13% Similarity=0.040 Sum_probs=70.7
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhccc---cchhcccccCCCCCCCccchhhccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rgl---~g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
..|+|++||.|.++..|.+. +- -+|+=+|.. +.|...-++.- +-+.+.=.+.++.-+.+||++-+.+.+..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 47999999999988777532 21 244444432 44444433310 1122222233343357999998877665322
Q ss_pred cCCCChhhhhhhhcccccCCceEEEecch-----------------hHHHHHHHHHhhcCccc
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd~~-----------------~~~~~~~~~~~~~~w~~ 521 (555)
+...+|-|+-|+|+|||.+++-+.. ...+++.+++++..++.
T Consensus 193 ----d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 193 ----DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 3567899999999999999875421 12466677777777764
No 307
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.47 E-value=0.064 Score=54.66 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 210 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~ 210 (555)
....+.+.+.+... +...|||||.|+|.++..|++. +++++++++.....-...+. ...++.++.+|+
T Consensus 16 ~~~~~~Iv~~~~~~--------~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDLS--------EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTCG--------TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-T
T ss_pred HHHHHHHHHhcCCC--------CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecch
Confidence 44566666666532 3468999999999999999864 68889888754422221111 346789999998
Q ss_pred CCCCCCC---CCccEEEecccccccccchHHHHHHHHhhcCC
Q 008748 211 KRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 249 (555)
Q Consensus 211 ~~Lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkP 249 (555)
..+.... +.-..|+++ +.| .-...++..+...-+.
T Consensus 86 l~~~~~~~~~~~~~~vv~N---lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGN---LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEE---ETG-TGHHHHHHHHHHHGGG
T ss_pred hccccHHhhcCCceEEEEE---ecc-cchHHHHHHHhhcccc
Confidence 8877553 334455543 444 2223456666553333
No 308
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.40 E-value=0.029 Score=56.06 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=67.4
Q ss_pred ccCCCcceeEeeccCCcchhhhhccC-CCceEEEecccCCCCchhHHhh-ccccchhcccccCCCCCCCccchhhccccc
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARLKIIYD-RGLIGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~~~l~~i~~-rgl~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
...+..++.|+|+++|.|.|++++.. .|-. .++-.+-|..+..+.+ -.+--+=||. |.++|. ||++...+++
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVL 168 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSG
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhh
Confidence 56788999999999999999999963 3433 2333444433443333 1122223333 467778 9999999998
Q ss_pred cccccCCCChhhhhhhhcccccCC--ceEEEecc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPE--GFVIIRDK 503 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~--g~~i~rd~ 503 (555)
-.+... ....||--+=+-|+|| |.++|-|.
T Consensus 169 h~~~d~--~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDE--DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HH--HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcchH--HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 755433 3567888899999999 99998754
No 309
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.40 E-value=0.082 Score=54.09 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=55.3
Q ss_pred CCCEEEEECCCCc--HHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CC----CCCcc
Q 008748 155 NIRNVLDVGCGVA--SFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YP----SRSFE 221 (555)
Q Consensus 155 ~~~~VLDIGCGtG--~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~----d~sFD 221 (555)
.++..||||||-- .....+++ .+|.-+|..|.-+..++.-.+........++.+|+.+.. +. .+-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5689999999954 34444543 378899999976654443222222112778888865421 00 11223
Q ss_pred ----EEEecccccccccc---hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 222 ----LAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 222 ----lVv~s~~~l~~~~d---~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+.+....++||++| +..++..+...|.||.+|+|+...
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 22223347899865 466999999999999999998754
No 310
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=94.34 E-value=0.039 Score=51.05 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=60.6
Q ss_pred eeEeeccCCcchhhhhccC-C--CceEEEecccCCC-CchhHHhh----cccc--chh-cccccCCCC-CCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKD-K--DVWVMNVAPVRMS-ARLKIIYD----RGLI--GTV-HDWCESFST-YPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~-~--~~wvmnv~p~~~~-~~l~~i~~----rgl~--g~~-~~~ce~~~t-yprtydl~h~~ 468 (555)
-+|+|++||.|.++-.|.+ . ..= |+=+|-. .-+...-. .|+- =.+ .|+=+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~---i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAK---IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSE---EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCE---EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 3799999999999888872 1 222 3333332 33333222 3442 111 22222 221 45889999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
++|.. -.....+|-+|=|.|+|+|.+++.+..
T Consensus 81 ~~l~~----~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHH----FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGG----TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhh----ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 88842 234678899999999999999998776
No 311
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.32 E-value=0.031 Score=58.00 Aligned_cols=103 Identities=14% Similarity=0.284 Sum_probs=62.1
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhH----HhhccccchhcccccCC--CCCCCccchhhc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKI----IYDRGLIGTVHDWCESF--STYPRTYDLLHA 467 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~----i~~rgl~g~~~~~ce~~--~typrtydl~h~ 467 (555)
+.....+.|+|++||.|.++.++.+. |-. +|+-.+-+..+.. +-+.|+-+-++-.+..| ..+| .+|++-.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence 34456789999999999999888654 432 3444444444443 34446543222222222 1345 3788655
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+++-.+... ....+|-++-|.|+|||.++|-|
T Consensus 222 ~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSANEQ--LSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 5544322111 23568889999999999999875
No 312
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.29 E-value=0.11 Score=51.12 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=52.7
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChh--hhhHHHHHHHHHcC-----CCeEEEEeC-CCCCC--CCCCCccEE
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPN--DVHENQIQFALERG-----IPSTLGVLG-TKRLP--YPSRSFELA 223 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~--dls~a~i~~A~~rg-----~~v~~~~~d-~~~Lp--~~d~sFDlV 223 (555)
.+.|||||.|.+...|+.. -|+|++|--. |.-++.++..+... .++.+...+ ..-+| |..++.+-.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 5999999999999999864 5777776432 23344444443221 122222222 12222 222222211
Q ss_pred Eecccccccccc-------hHHHHHHHHhhcCCCcEEEEEc
Q 008748 224 HCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 224 v~s~~~l~~~~d-------~~~~L~el~RvLkPGG~lvis~ 257 (555)
+..+---|+-.. ...++.+..-+|++||.++.++
T Consensus 143 ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 111101111110 1237899999999999999754
No 313
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.21 E-value=0.036 Score=52.84 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=68.2
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-----CchhHHhhcccc---chhcccccCCCCCCCccchhh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-----ARLKIIYDRGLI---GTVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-----~~l~~i~~rgl~---g~~~~~ce~~~typrtydl~h 466 (555)
+..+.-.+|+|.+|+-|||...+.........|+-+|-. ..+..| +|=| .+...-.+.++.=.+.+|||-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 455578999999999999999998765223334433321 111111 2211 111122222221126899999
Q ss_pred cccccccccc--CC--CChhhhhh---hhcccccCCceEEEe-----cchhHHHHHHHHHhhcCccceecccccccccCC
Q 008748 467 AWKVFSEIEE--RG--CSFEDLLI---EMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALS 534 (555)
Q Consensus 467 ~~~~~s~~~~--~~--c~~~~~~~---e~drilrp~g~~i~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 534 (555)
+|.-+..... .. -.+.-++- =+-..|+|||.+|+. +..+++..++..-...++- .+... ..
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~------Kp~~s-r~ 169 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV------KPPSS-RS 169 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE------E-TTS-BT
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE------ECcCC-CC
Confidence 9985441110 00 00111121 223559999988864 3336666666654444332 22211 22
Q ss_pred CCCceEEEEEe
Q 008748 535 SSEERVLIAKK 545 (555)
Q Consensus 535 ~~~~~~l~~~k 545 (555)
.+.|..|||.+
T Consensus 170 ~s~E~Ylv~~~ 180 (181)
T PF01728_consen 170 ESSEEYLVCRG 180 (181)
T ss_dssp TCBEEEEESEE
T ss_pred CccEEEEEEcC
Confidence 46788888864
No 314
>PRK14967 putative methyltransferase; Provisional
Probab=94.21 E-value=0.065 Score=53.08 Aligned_cols=117 Identities=17% Similarity=0.234 Sum_probs=66.1
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc--cchhcccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl--~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
-.|+|++||.|.++..+..... -+|+-++-. ..+...-+ .|+ .-+-.|+.+.+. ..+||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 4699999999999887765432 144444432 34432221 233 112235555433 358999998743331
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcCccc
Q 008748 474 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 474 ~~~-----------------~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~w~~ 521 (555)
... ....+..++-++-|+|+|||.+++- .+...+.++...+++-.|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 100 0012456777899999999999972 22223445555555545544
No 315
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.14 E-value=0.49 Score=46.32 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhh-----hH-HHHH-HHHHcC-CCeEEEEeCCCCCC-------CC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV-----HE-NQIQ-FALERG-IPSTLGVLGTKRLP-------YP 216 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dl-----s~-a~i~-~A~~rg-~~v~~~~~d~~~Lp-------~~ 216 (555)
...+|+|+=-|.|+|++.++.. ......+.+.+. .+ ...+ .+++.. .+....-...-.++ .+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 3468999999999999998863 112223333332 11 1111 121111 11111111111222 12
Q ss_pred CCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC----CChhhHH--HHHHHHHHHHhcCcEEEEEee
Q 008748 217 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA----HDPENRR--IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 217 d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~----~~~e~~~--~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..++|.++-.. .+| ......+..++++.|||||.+++....... .+..... .-..+....+..||++..+..
T Consensus 128 ~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 128 TAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred cchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeeh
Confidence 23444444222 233 344577999999999999999997633211 1111111 113567788999999887665
Q ss_pred ce
Q 008748 291 QT 292 (555)
Q Consensus 291 ~~ 292 (555)
..
T Consensus 206 il 207 (238)
T COG4798 206 IL 207 (238)
T ss_pred hh
Confidence 43
No 316
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=94.02 E-value=0.048 Score=53.55 Aligned_cols=96 Identities=23% Similarity=0.292 Sum_probs=56.1
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cc---cchh-cccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL---IGTV-HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl---~g~~-~~~ce~~~typrtydl~h~~~~ 470 (555)
..|+|++||.|.++..+... +- .-+|+-++.. +.+...-++ |+ +-++ .|..+ ++.=+.+||+|.++.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEecc
Confidence 46999999999998776432 10 0123333322 222222221 11 1111 12221 2222468999988766
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+- ...+...+|-++-++|+|||.+++-+
T Consensus 131 l~----~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LR----NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cc----cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 54 22457889999999999999998754
No 317
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=93.83 E-value=0.12 Score=53.18 Aligned_cols=136 Identities=17% Similarity=0.273 Sum_probs=82.4
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhh----ccc---c-chhcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD----RGL---I-GTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~----rgl---~-g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
..|+|++||.|.++.+|... |-+ +|+-++.. ..|.+.-+ .|+ + =+-.||.+.+.. ..||+|=++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 47999999999999888753 322 45555543 44544333 233 1 123577776532 37898865411
Q ss_pred ccc------c--ccCCC-------------ChhhhhhhhcccccCCceEEEecchhHHHHHHHHHh-hcCccceeccccc
Q 008748 471 FSE------I--EERGC-------------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFIT-ALKWDGWLSEVEP 528 (555)
Q Consensus 471 ~s~------~--~~~~c-------------~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~-~~~w~~~~~~~~~ 528 (555)
+.. + ..+.. .+..|+-+.-+.|+|||++++--...--..+++++. ...|.. +.+.
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~-~~~~-- 268 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYD-VENG-- 268 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCce-eEEe--
Confidence 110 0 00000 244678889999999999998766666777888776 456753 1111
Q ss_pred ccccCCCCCceEEEEEec
Q 008748 529 RIDALSSSEERVLIAKKK 546 (555)
Q Consensus 529 ~~~~~~~~~~~~l~~~k~ 546 (555)
.+ + .+.++++++++.
T Consensus 269 -~D-~-~g~~R~~~~~~~ 283 (284)
T TIGR00536 269 -RD-L-NGKERVVLGFYH 283 (284)
T ss_pred -cC-C-CCCceEEEEEec
Confidence 11 2 467999998753
No 318
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.71 E-value=0.036 Score=54.68 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=47.5
Q ss_pred eeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHH----hhccccchhcccccCCCCCC--Cccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKII----YDRGLIGTVHDWCESFSTYP--RTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i----~~rgl~g~~~~~ce~~~typ--rtydl~h~~~ 469 (555)
..|+|++||+|.+++.|... .|.-+-+.| .-+.+. -.-|+-.+---....+..++ ..||+|+...
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 57999999999999776532 233332222 222221 11232111111122233332 5799998665
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~----------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP----------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc----------cchHHHHHhhCCCcEEEEE
Confidence 433 3334555689999999884
No 319
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=93.68 E-value=0.034 Score=54.79 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=49.8
Q ss_pred eeEeeccCCcchhhhhccCC--C-ceEEEecccCCC-CchhH----Hhhccc---cchhcccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRMS-ARLKI----IYDRGL---IGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~-~wvmnv~p~~~~-~~l~~----i~~rgl---~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
..|+|++||.|.+++.|.+. + . .|+-++-. .-+.. +-+.|+ .=+..|..+.+.. ...||+|+.++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g---~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~ 154 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDG---LVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTA 154 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcC
Confidence 47999999999999988653 1 1 13333322 22222 223343 1122344443333 25899998665
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEE
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
... .+.-++-+.|+|||.+|+
T Consensus 155 ~~~----------~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 155 AGP----------KIPEALIDQLKEGGILVM 175 (215)
T ss_pred Ccc----------cccHHHHHhcCcCcEEEE
Confidence 333 233345678999999987
No 320
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.63 E-value=1.7 Score=43.93 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=74.1
Q ss_pred CCEEEEECCCCc-HHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC-CCCC-CCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVA-SFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RLPY-PSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG-~~a~~La~--~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~-~Lp~-~d~sFDlVv~s~~~l 230 (555)
+++||=||=+-- +++..|.. ++|+.+|++..-+. ...+.|.+.+.++.....|.. .||- -.++||++++--
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~-fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP--- 120 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLD-FINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP--- 120 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHH-HHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHH-HHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC---
Confidence 468999997665 45555543 47899999887653 333667778888999999864 3442 137899999642
Q ss_pred cccc-chHHHHHHHHhhcCCCc-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeeceEEe
Q 008748 231 DWLQ-RDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 295 (555)
Q Consensus 231 ~~~~-d~~~~L~el~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~~iw 295 (555)
.|.. -...++......||..| ..+++. .+.+.....|.++++.+.++|+.+.........|
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~----~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y 183 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGF----THKEASPDKWLEVQRFLLEMGLVITDIIPDFNRY 183 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEEEEB
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEE----ecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhccc
Confidence 2332 23558888889998766 433322 1222345689999999999999888766655433
No 321
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.59 E-value=0.099 Score=47.44 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=35.6
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeC
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 209 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d 209 (555)
++||||||.|.++..++.. .++++|.++......+.+++.....++.+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 4899999999999888753 588999988877655544433322335544443
No 322
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.57 E-value=0.25 Score=51.50 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCC--CeE
Q 008748 131 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI--PST 204 (555)
Q Consensus 131 ~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La----~~~V~~vdis~~dls~a~i~~A~~rg~--~v~ 204 (555)
++-.|+..+.+++......++ ..-++||||+|...+-..|. .-.++|.|+++..+..|+....+..+. .+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~---~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIP---EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccccc---cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 445788888888875432211 14589999999885544443 237889999999888887666555233 455
Q ss_pred EEEeCC-----CCCCCCCCCccEEEecc
Q 008748 205 LGVLGT-----KRLPYPSRSFELAHCSR 227 (555)
Q Consensus 205 ~~~~d~-----~~Lp~~d~sFDlVv~s~ 227 (555)
+..... ..+..++..||+.+|+-
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred EEEcCCccccchhhhcccceeeEEecCC
Confidence 554431 11223346799999875
No 323
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.57 E-value=0.41 Score=49.41 Aligned_cols=101 Identities=12% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCCEEEEECCCCcHHHHHHh-cC-----CCccccCChhhhhHHHHHHHH---HcCCCeEEEEeCCCCCCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLL-SH-----DIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La-~~-----~V~~vdis~~dls~a~i~~A~---~rg~~v~~~~~d~~~Lp~~d~sFDlVv~ 225 (555)
.+++|+=||||.=-++..+. +. .|+++|+++.....+. +... ..+..+.|..+|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 35699999999776555443 32 3668888887765554 2222 2356788988887776655568999996
Q ss_pred cccccccc-cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 226 SRCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 226 s~~~l~~~-~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+.. .... ++...++..+.+.++||..+++-.
T Consensus 199 Aal-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AAL-VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhh-cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 652 3222 255779999999999999999854
No 324
>PRK04457 spermidine synthase; Provisional
Probab=93.43 E-value=0.22 Score=50.81 Aligned_cols=139 Identities=11% Similarity=0.131 Sum_probs=73.7
Q ss_pred CcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhhc-cccc------hh-cccccCCCCCCCccchhhc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR-GLIG------TV-HDWCESFSTYPRTYDLLHA 467 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~r-gl~g------~~-~~~ce~~~typrtydl~h~ 467 (555)
..-++|+|+++|.|.++..|... |. +.|+-++- +..+.+.-+. ++.+ +. .|--+-+...|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 45678999999999999877542 31 23444443 3344333332 1111 11 1222223344678999965
Q ss_pred cccccccc-cCCCChhhhhhhhcccccCCceEEE---ecchhHHHHHHHHHhhcCccceecccccccccCCCCCceEEEE
Q 008748 468 WKVFSEIE-ERGCSFEDLLIEMDRMLRPEGFVII---RDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIA 543 (555)
Q Consensus 468 ~~~~s~~~-~~~c~~~~~~~e~drilrp~g~~i~---rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 543 (555)
+ .|.... ........++-++=++|+|||.+++ ..+...-..++.+...+.-.+ ..+..+ .....|+++
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~--~~~~~~-----~~~N~v~~a 214 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRV--LELPAE-----SHGNVAVFA 214 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcE--EEEecC-----CCccEEEEE
Confidence 4 343111 1112246888999999999999997 233333333444444433222 111111 224578889
Q ss_pred Eec
Q 008748 544 KKK 546 (555)
Q Consensus 544 ~k~ 546 (555)
.|.
T Consensus 215 ~~~ 217 (262)
T PRK04457 215 FKS 217 (262)
T ss_pred ECC
Confidence 873
No 325
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.37 E-value=0.036 Score=55.26 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=76.6
Q ss_pred ccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhccccc-hhcccccCCC--CCCCccchhhccc
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIG-TVHDWCESFS--TYPRTYDLLHAWK 469 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rgl~g-~~~~~ce~~~--typrtydl~h~~~ 469 (555)
..+.+.+|.++|.+||+|=++-+|.+.- =-..=++- .|-|-+.+|+|+-- .||-=-..|. +=++-+|||-|..
T Consensus 120 ~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 120 KADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred hccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 4566779999999999999999998720 11233343 38899999999732 2333333355 5578999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+|+-+. .++.|+.=.++.|.|||.++++
T Consensus 197 Vl~YlG----~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 197 VLPYLG----ALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred HHHhhc----chhhHHHHHHHhcCCCceEEEE
Confidence 999443 4999999999999999999986
No 326
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.31 E-value=0.017 Score=49.99 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=38.4
Q ss_pred EEECCCCcHHHHHHhcC-------CCccccCChhhhhHHHHHHHHHc--CCCeEEEEeCCCCC-C-CCCCCccEEEeccc
Q 008748 160 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRL-P-YPSRSFELAHCSRC 228 (555)
Q Consensus 160 LDIGCGtG~~a~~La~~-------~V~~vdis~~dls~a~i~~A~~r--g~~v~~~~~d~~~L-p-~~d~sFDlVv~s~~ 228 (555)
||||+..|..+..+++. .++++|..+. .+...+..++. ...+++..++.... + ++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888877752 4778887764 11222222222 23578888875432 1 3357899999543
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
-|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 332234455788899999999999873
No 327
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.31 E-value=0.069 Score=55.87 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=66.6
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHH----hhccc---cch-hcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDRGL---IGT-VHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i----~~rgl---~g~-~~~~ce~~~typrtydl~h~~~~ 470 (555)
.+|+|++||.|.++.+|... |. .+|+-++-. ..+.+. -..|+ |-+ -.|+-+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 47999999999999988643 43 346666643 445443 23354 222 235545443 358999987622
Q ss_pred ccc------c---cc-----------CCC-ChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhc
Q 008748 471 FSE------I---EE-----------RGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITAL 517 (555)
Q Consensus 471 ~s~------~---~~-----------~~c-~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~ 517 (555)
+.. + .. +.. -...|+-+.-+.|+|||.+++--... ..+++++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 110 0 00 000 12477888999999999999853333 34577776643
No 328
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.27 E-value=0.051 Score=56.17 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=73.7
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC-C-CCCCCccEEEe--
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YPSRSFELAHC-- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L-p-~~d~sFDlVv~-- 225 (555)
..+|||+.+|.|+=+.++++ ..+++.|++..-+..-. ..+.+.|. .+.....|...+ + .....||.|+.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 45899999999988777775 25778888776553333 23333454 445555665444 1 22346999996
Q ss_pred --ccc-ccccccc----------------hHHHHHHHHhhc----CCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-
Q 008748 226 --SRC-RIDWLQR----------------DGILLLELDRLL----RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM- 281 (555)
Q Consensus 226 --s~~-~l~~~~d----------------~~~~L~el~RvL----kPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~- 281 (555)
+.. ++.-.++ ...+|..+.+.| ||||+++.++-.... .| .-..++.++++.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eE---NE~vV~~fl~~~~ 239 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EE---NEEVVEKFLKRHP 239 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GG---THHHHHHHHHHST
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HH---HHHHHHHHHHhCC
Confidence 211 1111111 134899999999 999999998744211 11 122455566655
Q ss_pred CcEEE
Q 008748 282 CWKIV 286 (555)
Q Consensus 282 gw~vv 286 (555)
.|+++
T Consensus 240 ~~~l~ 244 (283)
T PF01189_consen 240 DFELV 244 (283)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 55554
No 329
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=93.19 E-value=0.17 Score=44.18 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=53.6
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----Hhhccccch--h-cc--cccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGT--V-HD--WCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl~g~--~-~~--~ce~~~typrtydl~h~~~ 469 (555)
..|+|++||.|.++..+... |- .+|+-++-. ..+.. +...|+-.+ . .| |+.. .-+.+||.+=..+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEECC
Confidence 48999999999999888653 32 345555543 33332 122233111 1 11 2221 2235788874433
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.++ .+..++-++-|.|+|||++++-
T Consensus 97 ~~~-------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SGG-------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cch-------hHHHHHHHHHHHcCCCCEEEEE
Confidence 222 2467899999999999999973
No 330
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=93.13 E-value=0.06 Score=54.07 Aligned_cols=114 Identities=20% Similarity=0.100 Sum_probs=77.7
Q ss_pred CCcceeEeeccCCcchhhhhcc-CCCceEEEecccCCC-CchhHHhhccccchhcccc--------cCCCCCCCccchhh
Q 008748 397 KNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWC--------ESFSTYPRTYDLLH 466 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~-~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~c--------e~~~typrtydl~h 466 (555)
...-|-+.|.+||.| +||..+ +. -=||+-+|-. ..|.+ ..-+.--+||+=- +.|..=+.+-|||-
T Consensus 31 ~~~h~~a~DvG~G~G-qa~~~iae~---~k~VIatD~s~~mL~~-a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNG-QAARGIAEH---YKEVIATDVSEAMLKV-AKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT 105 (261)
T ss_pred CCCcceEEEeccCCC-cchHHHHHh---hhhheeecCCHHHHHH-hhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence 345568999999999 776654 22 1278888765 66763 3444444555443 33334478999988
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEE----EecchhHHHHHHHHHhhcCcc
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI----IRDKSSIINYIRKFITALKWD 520 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i----~rd~~~~~~~~~~~~~~~~w~ 520 (555)
|.-.|- =|+++..+-++-|+|||.|-+| .+|+.-+.-++-++..++.|+
T Consensus 106 ~Aqa~H-----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 106 AAQAVH-----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhhHH-----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 766554 3779999999999999999332 466666666777777777775
No 331
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.10 E-value=0.5 Score=50.00 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=55.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCC-----eEEEEeCCCCCCCCCCCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-----STLGVLGTKRLPYPSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~-----v~~~~~d~~~Lp~~d~sFDlVv 224 (555)
++++|||+|.|.|.-+.++-+. .++.++.++. +.+---..+..-+.. ..=+..|-..+|.. ..|++|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhh
Confidence 4567999999999765554432 2333333331 111111122211111 11122232333433 4688888
Q ss_pred ecccccccccch---HHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 CSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 ~s~~~l~~~~d~---~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
...-.++- ... ...++.+-.++.|||.|+|+.++.
T Consensus 191 ~~~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 191 VLDELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhccc-cCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 66543432 222 227888889999999999998774
No 332
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=93.02 E-value=0.079 Score=53.77 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=71.7
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhh----ccccchhcccccCCCC-CCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCESFST-YPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~----rgl~g~~~~~ce~~~t-yprtydl~h~~~~~s~ 473 (555)
.+|+|++||.|.++-+|... +- .+|+-++. +..+...-+ -|+--+-.|+.+.++. ....||+|=++=-+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 36999999999999877532 22 13444443 233332211 1321122355444321 2346888866543321
Q ss_pred c------------ccCCCC----------hhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccce
Q 008748 474 I------------EERGCS----------FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 474 ~------------~~~~c~----------~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~ 522 (555)
. +..+.. +..|+-...++|+|||.+++-=..+-..+|..++....|+..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIAR 236 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCce
Confidence 0 000111 347777888999999999987666667889999998888874
No 333
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=92.72 E-value=0.15 Score=55.12 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=70.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-----CchhHHhhccccc---hhccc---ccCCCCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKIIYDRGLIG---TVHDW---CESFSTYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-----~~l~~i~~rgl~g---~~~~~---ce~~~typrtydl~h~~ 468 (555)
..++|+|||.|.|+.+|... |-+ ||+=++-. ..+.-+-.+||-. +..|- .+.|+ +.++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe
Confidence 46999999999999999743 322 55555532 1222345556522 12232 23343 3689999864
Q ss_pred ccccccc-c---CCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhc-Ccc
Q 008748 469 KVFSEIE-E---RGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL-KWD 520 (555)
Q Consensus 469 ~~~s~~~-~---~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~-~w~ 520 (555)
|..-+ + +|=-...+|-|+=|+|+|||.+.++ |..+..+.+.+.+... +++
T Consensus 200 --FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~ 255 (390)
T PRK14121 200 --FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAK 255 (390)
T ss_pred --CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCce
Confidence 43211 1 2223368999999999999999986 6666666666665544 444
No 334
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=92.69 E-value=0.2 Score=52.23 Aligned_cols=128 Identities=19% Similarity=0.259 Sum_probs=66.5
Q ss_pred eeEeeccCCcc--hhhhhccCC-CceEEEecccCCCCchhHHhhccccchhc-ccccCCCCCCCccchhhcccccccccc
Q 008748 401 RNVMDMNSNLG--GFAAALKDK-DVWVMNVAPVRMSARLKIIYDRGLIGTVH-DWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g--~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~rgl~g~~~-~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
..|+|++||+| +.||+++.- .|.-.-.=|..-.++.--+-.-|+-.-+. ...+.+.. ..||||=|+=+...
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHH---
Confidence 48999999999 456666542 34333322221112222222333322110 01222232 79999987766552
Q ss_pred CCCChhhhhhhhcccccCCceEEEecch-hHHHHHHHHHhhcCccceecccccccccCCCCCceEEEEEec
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
+..++=++.+.|+|||++|++=-. +-.+.|.+..+. .|+..... + .+.---|+++|+
T Consensus 238 ----L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~---~-----~~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ----LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEER---E-----EGEWVALVFKKK 295 (295)
T ss_dssp ----HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEE---E-----ETTEEEEEEEE-
T ss_pred ----HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEE---E-----ECCEEEEEEEeC
Confidence 456777789999999999976111 113444455555 66652111 1 245667777775
No 335
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=92.42 E-value=0.079 Score=51.18 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=52.7
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCC-CCccchhhccccccccccCCC
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEERGC 479 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~ty-prtydl~h~~~~~s~~~~~~c 479 (555)
+|+|++||.|.++.+|.+..-. +++-++.. ..+.....+|+--+..|..+.++.+ +++||+|-+.+.|..+.
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc----
Confidence 7999999999999988653211 22333322 3344444566433333443333334 46999999998876432
Q ss_pred ChhhhhhhhcccccC
Q 008748 480 SFEDLLIEMDRMLRP 494 (555)
Q Consensus 480 ~~~~~~~e~drilrp 494 (555)
+...+|-||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 266677777666554
No 336
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.33 E-value=0.42 Score=47.87 Aligned_cols=96 Identities=16% Similarity=0.293 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC--e
Q 008748 130 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--S 203 (555)
Q Consensus 130 ~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~--v 203 (555)
++...|++.+++++....+.+. ++.-++||||.|.-.+--.+-. -+.+|.|+++..++.++..+....+.. +
T Consensus 55 PgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I 132 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAI 132 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhe
Confidence 5778899999999987665544 3456899999887654333322 267788888888877776555443332 2
Q ss_pred EEEEe-CCC----CCCCCCCCccEEEecc
Q 008748 204 TLGVL-GTK----RLPYPSRSFELAHCSR 227 (555)
Q Consensus 204 ~~~~~-d~~----~Lp~~d~sFDlVv~s~ 227 (555)
.+... |.. .+--..+.||++.|+-
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNP 161 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNP 161 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCC
Confidence 33322 211 1112256899999986
No 337
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=91.81 E-value=0.15 Score=50.00 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=48.9
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc--hhcccccCCCCCC--Cccchhhcccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG--TVHDWCESFSTYP--RTYDLLHAWKV 470 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g--~~~~~ce~~~typ--rtydl~h~~~~ 470 (555)
-.+|+|++||.|.+++.|...- - .|+-++.. +-+...-+ -|+-. +.+. ..+.++| .+||+|..+..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~-~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV-R--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh-C--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccC
Confidence 3579999999999988765431 1 34444433 22222211 13311 1111 1223333 58999887654
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~----------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 154 AP----------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred ch----------hhhHHHHHhcCCCcEEEEE
Confidence 43 2233456899999999874
No 338
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=91.81 E-value=0.21 Score=51.60 Aligned_cols=115 Identities=19% Similarity=0.300 Sum_probs=68.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hcccc---c-hhcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLI---G-TVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl~---g-~~~~~ce~~~typrtydl~h~~~~ 470 (555)
.+|+|++||.|.++.+|... |-+ +|+-++-. ..|.+.- ..|+- - +..|+-+.++ +.+||+|=++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 47999999999999998753 322 45555543 4444332 23542 1 2234434432 347999887521
Q ss_pred ccc------cc--------------cCCC-ChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCcc
Q 008748 471 FSE------IE--------------ERGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWD 520 (555)
Q Consensus 471 ~s~------~~--------------~~~c-~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~ 520 (555)
+.. +. .+.. ....|+-+.-+.|+|||.+++.-.... +++++++....|.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFT 268 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCc
Confidence 110 00 0000 124678889999999999998644433 6888888765443
No 339
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=91.71 E-value=0.44 Score=51.96 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=88.6
Q ss_pred HhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccC-CCceEEEecccCC-CCchhHHhh----ccc-c-c
Q 008748 375 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYD----RGL-I-G 446 (555)
Q Consensus 375 ~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~-~~~l~~i~~----rgl-~-g 446 (555)
.||+.+.+.+-.. + ..+ .+|+|++||.|.++.+|.. .|- .+|+-+|. +..|.+.-+ .|+ + =
T Consensus 236 peTE~LVe~aL~~---l----~~~--~rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~f 304 (423)
T PRK14966 236 PETEHLVEAVLAR---L----PEN--GRVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEF 304 (423)
T ss_pred ccHHHHHHHhhhc---c----CCC--CEEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 4566665555332 2 222 2799999999999987753 232 24455554 244443322 232 1 1
Q ss_pred hhcccccCCCCCCCccchhhcccccccccc------------------CCCC---hhhhhhhhcccccCCceEEEecchh
Q 008748 447 TVHDWCESFSTYPRTYDLLHAWKVFSEIEE------------------RGCS---FEDLLIEMDRMLRPEGFVIIRDKSS 505 (555)
Q Consensus 447 ~~~~~ce~~~typrtydl~h~~~~~s~~~~------------------~~c~---~~~~~~e~drilrp~g~~i~rd~~~ 505 (555)
+-.|+.+....-..+||+|-++-=+..... ..-. +..|+-+.-+.|+|||++++-=..+
T Consensus 305 i~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 305 AHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD 384 (423)
T ss_pred EEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc
Confidence 224555431111236999887553321000 0001 2356667778999999999865556
Q ss_pred HHHHHHHHHhhcCccceecccccccccCCCCCceEEEEEec
Q 008748 506 IINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 506 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
--+.+++++....|+.- ... .+ + .+.++++++++.
T Consensus 385 Q~e~V~~ll~~~Gf~~v-~v~---kD-l-~G~dR~v~~~~~ 419 (423)
T PRK14966 385 QGAAVRGVLAENGFSGV-ETL---PD-L-AGLDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHHCCCcEE-EEE---Ec-C-CCCcEEEEEEEh
Confidence 67889999988888641 121 11 2 468999998753
No 340
>PRK11524 putative methyltransferase; Provisional
Probab=91.68 E-value=0.44 Score=49.19 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=48.2
Q ss_pred EEEEeCCCCC--CCCCCCccEEEecccc-c--c------------cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChh
Q 008748 204 TLGVLGTKRL--PYPSRSFELAHCSRCR-I--D------------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE 266 (555)
Q Consensus 204 ~~~~~d~~~L--p~~d~sFDlVv~s~~~-l--~------------~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e 266 (555)
.+..+|...+ .+++++||+|++.--. + . |..-...++.++.|+|||||.+++......
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~----- 84 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN----- 84 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh-----
Confidence 4556665442 3567889999974210 0 0 111124589999999999999998643211
Q ss_pred hHHHHHHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 267 NRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 267 ~~~~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
... ..++.+.+|... ...+|+|+.
T Consensus 85 ----~~~-~~~~~~~~f~~~----~~iiW~k~~ 108 (284)
T PRK11524 85 ----MPF-IDLYCRKLFTIK----SRIVWSYDS 108 (284)
T ss_pred ----hhH-HHHHHhcCcceE----EEEEEEeCC
Confidence 111 233445677543 446899863
No 341
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=91.40 E-value=0.1 Score=49.46 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=65.5
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHH----hhccc---cchhcccccCCCCCCCccchhhcccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDRGL---IGTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i----~~rgl---~g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
-.+|+|++||+|-.+.+|... |-.. |+-++-. +-+... -.-|+ --+.+|+.+.+. +..||+|=++-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 456999999999888877643 4333 3333432 333322 22333 234567777666 589999876543
Q ss_pred cccccc-CCCChhhhhhhhcccccCCceE--EEecchhHHHHHHHHHh
Q 008748 471 FSEIEE-RGCSFEDLLIEMDRMLRPEGFV--IIRDKSSIINYIRKFIT 515 (555)
Q Consensus 471 ~s~~~~-~~c~~~~~~~e~drilrp~g~~--i~rd~~~~~~~~~~~~~ 515 (555)
|..... ....+..++-+-=++|+|||.+ ++......-..++++..
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 331111 1123678888999999999977 45655555444555444
No 342
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.73 E-value=0.59 Score=43.41 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=60.2
Q ss_pred CccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCC--CCCCCccEEEeccccccccc-----ch---HHHHHHHHhh
Q 008748 178 IIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWLQ-----RD---GILLLELDRL 246 (555)
Q Consensus 178 V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~l~~~~-----d~---~~~L~el~Rv 246 (555)
|.++||-...+............ .++.++..+=+++. .+.+.+|+|+.+...|+-.+ .+ -..++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 56788877777655544433322 24777776644443 23358999997644333221 11 3378999999
Q ss_pred cCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHh---cCcEEEEE
Q 008748 247 LRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS---MCWKIVSK 288 (555)
Q Consensus 247 LkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~---~gw~vv~~ 288 (555)
|+|||.++++.=. ..+...++.+.+.+.++. ..|.+...
T Consensus 82 L~~gG~i~iv~Y~---GH~gG~eE~~av~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 82 LKPGGIITIVVYP---GHPGGKEESEAVEEFLASLDQKEFNVLKY 123 (140)
T ss_dssp EEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred hccCCEEEEEEeC---CCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence 9999999987622 223444555666666655 45665543
No 343
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=90.56 E-value=0.018 Score=49.41 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=55.3
Q ss_pred EeeccCCcchhhhhccCCC--ceEEEecccCC-CCchhHHhhcc----c-cchhcccccCCCCCCCccchhhcccc-ccc
Q 008748 403 VMDMNSNLGGFAAALKDKD--VWVMNVAPVRM-SARLKIIYDRG----L-IGTVHDWCESFSTYPRTYDLLHAWKV-FSE 473 (555)
Q Consensus 403 ~~dm~~~~g~faa~l~~~~--~wvmnv~p~~~-~~~l~~i~~rg----l-~g~~~~~ce~~~typrtydl~h~~~~-~s~ 473 (555)
|+|++||.|.+..+|.+.= -=-..++-+|- +..|....++. + +=.++.=++.++..-.+||++=+.++ |..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999998887520 00035555663 36666666555 2 11111112223333459999988665 554
Q ss_pred cccCCCChhhhhhhhcccccCCc
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEG 496 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g 496 (555)
+.. =.++.++=+|=++|||||
T Consensus 81 ~~~--~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSP--EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSH--HHHHHHHHHHHHTEEEEE
T ss_pred CCH--HHHHHHHHHHHHHhCCCC
Confidence 332 247899999999999998
No 344
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=90.41 E-value=0.3 Score=47.92 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=58.9
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchhcccccCCCCCCCccchhhcccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
-.+|+|++||.|.|+.+|.+... .|+-++.. +-+...-++ |+-...+-....+..-+.+||++-+.++|...
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 46899999999999998875432 24444433 334433222 22111111122244445789999988877532
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.. -.+..++-++-|++++++.+.+...
T Consensus 141 ~~--~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 141 PQ--EDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred CH--HHHHHHHHHHHhhcCCeEEEEECCc
Confidence 21 2467788888888876666655443
No 345
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=90.37 E-value=0.31 Score=47.84 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=59.8
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhccc-cchh-cccccCCCCCCCccchhhccccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRGL-IGTV-HDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rgl-~g~~-~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
-..|+|.+||.|.++.+|... +- .+|+-++-. +-+...-++.- +-+. .|-.++|+ +++||+|-+.++|.++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhCC
Confidence 356999999999999998754 31 245555533 44444433210 1122 23333332 46999999999988653
Q ss_pred cCCCChhhhhhhhcccccCCceEEEe
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
. =.+..++-||.|++ +++++|-
T Consensus 120 p--~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 120 P--DNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred H--HHHHHHHHHHHhhc--CcEEEEE
Confidence 1 24678889999998 5677774
No 346
>PRK07402 precorrin-6B methylase; Provisional
Probab=90.24 E-value=0.57 Score=45.25 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=57.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHh----hcccc--chhc-ccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGLI--GTVH-DWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~----~rgl~--g~~~-~~ce~~~typrtydl~h~~~~~ 471 (555)
..|+|++||.|.++..+... +- -.|+-++- +..+...- +.|+- =+.+ |--+.+...+-.+|.++.++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 47999999999998766421 21 12333443 22332221 12331 1111 11111111111234443221
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKW 519 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w 519 (555)
...+..++-++-|+|+|||.+++-. +.+.+.++.+.++.+++
T Consensus 118 ------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 118 ------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred ------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 1357899999999999999998764 34445556666665543
No 347
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=90.23 E-value=0.91 Score=46.91 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=92.8
Q ss_pred hHhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhH----Hhhccc---
Q 008748 374 HEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGL--- 444 (555)
Q Consensus 374 ~~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~----i~~rgl--- 444 (555)
..||+.+-+.+- ..+. .... +|+||++|+|--|.+|... |. .+|+-+|- +.-|.+ +-.-||
T Consensus 93 r~dTe~Lve~~l---~~~~---~~~~--~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~ 162 (280)
T COG2890 93 RPDTELLVEAAL---ALLL---QLDK--RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVRV 162 (280)
T ss_pred CCchHHHHHHHH---Hhhh---hcCC--cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence 367888877765 1121 1122 9999999999999999743 44 45666663 345543 233353
Q ss_pred cchhcccccCCCCCCCccchhhccccccc------------------cccCCCC---hhhhhhhhcccccCCceEEEecc
Q 008748 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSE------------------IEERGCS---FEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 445 ~g~~~~~ce~~~typrtydl~h~~~~~s~------------------~~~~~c~---~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+-+..||=+..+ -+||+|=++==.-. +...... +..|+-+..++|+|||++++.-.
T Consensus 163 ~~~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 163 LVVQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred EEEeeecccccC---CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 233335555544 48888753321100 0111122 33678889999999999999988
Q ss_pred hhHHHHHHHHHhhcCccceecccccccccCCCCCceEEEEEe
Q 008748 504 SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 504 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
..-.++|+++.....+-..+.. +.+ -.+.++++++++
T Consensus 240 ~~q~~~v~~~~~~~~~~~~v~~--~~d---~~g~~rv~~~~~ 276 (280)
T COG2890 240 LTQGEAVKALFEDTGFFEIVET--LKD---LFGRDRVVLAKL 276 (280)
T ss_pred CCcHHHHHHHHHhcCCceEEEE--Eec---CCCceEEEEEEe
Confidence 7788899999998885111111 111 135677776654
No 348
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=90.12 E-value=0.88 Score=49.25 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCCCEEEEECCCCcHHHHHHhc----C-CCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCC---CCCCCccEEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLS----H-DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP---YPSRSFELAH 224 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~----~-~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp---~~d~sFDlVv 224 (555)
..+.+|||+.+-.|.=+.++|. . -|.+.|.+..-+..-. +.+.+.|.. ......|...+| ++. +||-|+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~-~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLK-ANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHH-HHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 4457999999999965544443 2 4556665554332222 333444544 445556666555 554 899988
Q ss_pred e----cccccc-----------------cccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 C----SRCRID-----------------WLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 ~----s~~~l~-----------------~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
- +...+- +..-..++|.....++++||+|+.++-..
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 3 321010 11112458888899999999999987554
No 349
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=89.99 E-value=0.29 Score=48.04 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=60.9
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcccc-ch---hcccccCCCCCCCccchhhcccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLI-GT---VHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~-g~---~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
-..|+|++||.|.|+..|.+... .|+=++.. +.+....+|.-- +. ..=.+..+..-|.+||+|=+..++...
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 46899999999999999987532 45555543 555555444210 00 000111222234789988766665422
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
. .-.+..++-++.|+++|++++.+-..
T Consensus 133 ~--~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 133 P--ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred C--HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 1 12467789999999998888877543
No 350
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=89.94 E-value=0.11 Score=50.79 Aligned_cols=93 Identities=24% Similarity=0.424 Sum_probs=59.5
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC----Cchh-HHhhcccc--chhcccccCCCCCCCccchhhcccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS----ARLK-IIYDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~----~~l~-~i~~rgl~--g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
.++|++||-|.=|-.|.++-. +|.-+|.. ..|. ++-.+||- ....|. +.+ .+|..||+|-+..+|-.+
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-~~~-~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADL-NDF-DFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG-CCB-S-TTTEEEEEEESSGGGS
T ss_pred cEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecc-hhc-cccCCcCEEEEEEEeccC
Confidence 699999999998887765432 45555433 2333 44557764 222332 223 357899999987777644
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEe
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.. =.+..|+--|-.-|+|||+++|-
T Consensus 108 ~~--~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 108 QR--ELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp -G--GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CH--HHHHHHHHHHHhhcCCcEEEEEE
Confidence 32 34678889999999999999883
No 351
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=89.80 E-value=0.19 Score=55.12 Aligned_cols=99 Identities=16% Similarity=0.296 Sum_probs=55.2
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhh----ccccc---hhcccccCCCCCCCccchhhc---
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYD----RGLIG---TVHDWCESFSTYPRTYDLLHA--- 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~----rgl~g---~~~~~ce~~~typrtydl~h~--- 467 (555)
.+|+||+||.|+++.+|.+. +- ..|+-++-. +.+..+-+ .|+-. +-.|..+....++.+||+|=.
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 57999999999998877542 11 134444432 44443322 24321 223443333345578998743
Q ss_pred ---ccccccc-----ccCCCCh-------hhhhhhhcccccCCceEEEe
Q 008748 468 ---WKVFSEI-----EERGCSF-------EDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 468 ---~~~~s~~-----~~~~c~~-------~~~~~e~drilrp~g~~i~r 501 (555)
.|++... ....-.+ ..||-+.=|+|+|||.+++.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3333310 0000011 35788889999999999965
No 352
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=89.71 E-value=0.4 Score=52.40 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=59.9
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh---hc-cccchh--cccccCC--CC--CCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY---DR-GLIGTV--HDWCESF--ST--YPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~---~r-gl~g~~--~~~ce~~--~t--yprtydl~h~~ 468 (555)
.+|+||+||.||++++|... + --.|+-++-. ..|..+- +| |+-... ++ ...+ +. -+.+||.|-.+
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-cccccccccccccccCEEEEc
Confidence 58999999999999887642 2 1134444432 4444332 22 432001 11 1111 11 24579998743
Q ss_pred ------cccccccc-CCC-C----------hhhhhhhhcccccCCceEEEe-------cchhHHHHHH
Q 008748 469 ------KVFSEIEE-RGC-S----------FEDLLIEMDRMLRPEGFVIIR-------DKSSIINYIR 511 (555)
Q Consensus 469 ------~~~s~~~~-~~c-~----------~~~~~~e~drilrp~g~~i~r-------d~~~~~~~~~ 511 (555)
|++...-. +-. . -..||-++=|+|||||.+++. ++.+++..+-
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l 384 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFL 384 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHH
Confidence 45431100 000 0 146888999999999999987 6666665443
No 353
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.56 E-value=4.2 Score=38.78 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=70.2
Q ss_pred ECCCCcHHHHHHhcC-----CCccccCChhhhhH-------HHHHHHHHcCCCeEEEEeCCCCCC----CCCCCccEEEe
Q 008748 162 VGCGVASFGAYLLSH-----DIIAMSLAPNDVHE-------NQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 225 (555)
Q Consensus 162 IGCGtG~~a~~La~~-----~V~~vdis~~dls~-------a~i~~A~~rg~~v~~~~~d~~~Lp----~~d~sFDlVv~ 225 (555)
||=|.=+|+..|+.. ++++..+...+.-. ..++..++.|..+.+ -.|+..+. ...+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEEE
Confidence 555666888888763 45555544332111 112222334444443 34554443 35678999997
Q ss_pred ccccccccc------c---------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 226 SRCRIDWLQ------R---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 226 s~~~l~~~~------d---------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
++- |.. + ...+++.+.++|+++|.+.|+......+ ..|. ++.+++..|+.++...
T Consensus 82 NFP---H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-----~~W~-i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NFP---HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-----DSWN-IEELAAEAGLVLVRKV 151 (166)
T ss_pred eCC---CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-----cccc-HHHHHHhcCCEEEEEe
Confidence 652 222 1 1337899999999999999987543211 2343 5689999999887553
No 354
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.03 E-value=0.46 Score=45.12 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=45.3
Q ss_pred CCccEEEeccccccccc-----ch------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhh-HHHHHHHHHHHHhcCcEE
Q 008748 218 RSFELAHCSRCRIDWLQ-----RD------GILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~-----d~------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~-~~~~~~l~~l~~~~gw~v 285 (555)
++||.+.|.. +++|.. |+ ...+.++.++|||||.|+++.|-.-.....+ .++|..+.-.+--.||+.
T Consensus 62 ~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 62 GSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred ccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 6799888655 566541 11 4478999999999999999998643222221 234444444445568887
Q ss_pred EEE
Q 008748 286 VSK 288 (555)
Q Consensus 286 v~~ 288 (555)
+..
T Consensus 141 i~t 143 (177)
T PF03269_consen 141 IDT 143 (177)
T ss_pred Eee
Confidence 753
No 355
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=88.90 E-value=0.41 Score=49.78 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=58.4
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc------cc--cchhcccccCCCCCCCcc----c-hhh
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR------GL--IGTVHDWCESFSTYPRTY----D-LLH 466 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r------gl--~g~~~~~ce~~~typrty----d-l~h 466 (555)
.+|+|++||.|.++..|.+.-.=..+|+++|-+ .-|....++ ++ .++-.|-++.++ +|..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEEE
Confidence 479999999999988886431002468888865 555555443 11 234455555432 23333 2 232
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
..+.|..+. .=+...+|-++=+.|+|||.++|.
T Consensus 144 ~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 222222111 112557899999999999999963
No 356
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=88.80 E-value=1.1 Score=49.90 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=78.0
Q ss_pred CCEEEEECCCCcHHHHHHhc------C--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLS------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~------~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
...|+=+|+|-|-+.....+ + ++.+++-.|.++.--+-..-..-...++++..|+..++.|..+.|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 55788999999977655443 2 5667777776654332211222245789999999998866678999985 3
Q ss_pred cccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCc
Q 008748 228 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 228 ~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw 283 (555)
.+-.+.++. .+.|..+.+.|||.|..+=..-..|-..--....|.++.+.-....|
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a~~~~~~f 504 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKATNDPNAF 504 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHhcCCcccc
Confidence 233333332 45899999999999876622211111112223466776666553333
No 357
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=88.49 E-value=0.46 Score=50.01 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=59.7
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhccccc--hh-cccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIG--TV-HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl~g--~~-~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.|+|..||.|+|+.++.... .+|+=++.. ..+.. +-.-|+-. ++ .|-. .++.-+.+||+|=.+-=|..
T Consensus 185 ~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred EEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCCcC
Confidence 69999999999954332211 234444432 22221 11224433 11 2221 22222358898877533321
Q ss_pred ---cccC--CCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCc
Q 008748 474 ---IEER--GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKW 519 (555)
Q Consensus 474 ---~~~~--~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w 519 (555)
.... ..-...+|-|+-|+|+|||++++--..+ ..+++.++.-.|
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 1110 0224689999999999999887643222 144556777777
No 358
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=88.35 E-value=0.33 Score=50.17 Aligned_cols=96 Identities=21% Similarity=0.429 Sum_probs=68.4
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-Cchh----HHhhcccc----chhcccccCCCCCCCccch
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLK----IIYDRGLI----GTVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~----~i~~rgl~----g~~~~~ce~~~typrtydl 464 (555)
|+.|+ .|||++||-||.+-.+... .| ||+-++-+ +++. -|-++||- =..+||-+-=.+ ||=
T Consensus 70 L~~G~--~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~----fDr 140 (283)
T COG2230 70 LKPGM--TLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP----FDR 140 (283)
T ss_pred CCCCC--EEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc----cce
Confidence 55554 5999999999987666533 45 45555533 5555 47889997 457788655433 777
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
|=+-+.|-..... +..+.+-=+.++|+|||.+++.
T Consensus 141 IvSvgmfEhvg~~--~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 141 IVSVGMFEHVGKE--NYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred eeehhhHHHhCcc--cHHHHHHHHHhhcCCCceEEEE
Confidence 7777777755432 4788888899999999999865
No 359
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.30 E-value=1.1 Score=47.48 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=57.7
Q ss_pred CCEEEEECCC-CcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|+=+|+| .|..+..++.. +|+++| .++...+.|++.|....+...|.....--.+.||+|+..- .
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~-----~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-~-- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAIT-----RSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-G-- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEe-----CChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC-C--
Confidence 4578888877 33666666653 555554 4556667788777654443223322322123499998433 2
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
...+....+.||+||.++++.-.
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 24688899999999999997643
No 360
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=88.23 E-value=1.1 Score=44.34 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=50.3
Q ss_pred CCEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-------C-CCCC
Q 008748 156 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------Y-PSRS 219 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-------~-~d~s 219 (555)
+.+|+++|.-.|..+..+|+ +.|.++|+........+++. .-....+++.++|..... . ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 46899999999876655542 47899999554432222111 011357899999865432 1 1122
Q ss_pred ccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 220 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 220 FDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
-.+|+ -. +-|...+.-..|+-...++++|+++++-+
T Consensus 112 ~vlVi-lD-s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 112 PVLVI-LD-SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SEEEE-ES-S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ceEEE-EC-CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 33444 22 34444555667888999999999999843
No 361
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=87.89 E-value=0.31 Score=49.89 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCcceeEeeccCCcchhhhhccCCC-ceEEEecccCCC-CchhHHhhc-----c-----ccchh-cccccCCCCCCCccc
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRMS-ARLKIIYDR-----G-----LIGTV-HDWCESFSTYPRTYD 463 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~~~-~wvmnv~p~~~~-~~l~~i~~r-----g-----l~g~~-~~~ce~~~typrtyd 463 (555)
..+-++|+++++|.|+++..+.+.+ + .+|+=++.. +.+...-+. | -+-+. .|--+-....+++||
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 4455699999999999998876554 3 233333322 222211110 0 00011 121111123367999
Q ss_pred hhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 464 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 464 l~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+|=.+..........--....+-.+-|+|+|||.+++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 98655432100000011245566788999999999985
No 362
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=87.68 E-value=0.28 Score=47.91 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=71.0
Q ss_pred eEeeccCCcchhhhhccCC-CceEEEecccCCC-----CchhHHhhccccchhcccccCCCCC-----CCccchhhcccc
Q 008748 402 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKIIYDRGLIGTVHDWCESFSTY-----PRTYDLLHAWKV 470 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-----~~l~~i~~rgl~g~~~~~ce~~~ty-----prtydl~h~~~~ 470 (555)
-++|++||.|.|.++|... |= .|++=++-. ..+.-+..+||-.+.-=.|.+.... |-+.|-||- .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i--~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI--N 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE--E
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE--e
Confidence 7999999999999998522 21 355555543 3445677778855555455554311 346665552 2
Q ss_pred cccc------ccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhc
Q 008748 471 FSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL 517 (555)
Q Consensus 471 ~s~~------~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~ 517 (555)
|..- .++|=--...|-+|-|+|+|||.+.++ |..+..+.+.+.+...
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 3321 133434457888999999999999986 7778888888888875
No 363
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.67 E-value=0.29 Score=43.45 Aligned_cols=38 Identities=21% Similarity=0.572 Sum_probs=27.1
Q ss_pred CccEEEeccccccccc----c--hHHHHHHHHhhcCCCcEEEEEc
Q 008748 219 SFELAHCSRCRIDWLQ----R--DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 219 sFDlVv~s~~~l~~~~----d--~~~~L~el~RvLkPGG~lvis~ 257 (555)
.||+|.|.. +.-|+. | ...+++.+.+.|+|||.|++--
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999854 455541 2 2458999999999999999854
No 364
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=87.67 E-value=2.6 Score=42.83 Aligned_cols=130 Identities=22% Similarity=0.220 Sum_probs=72.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+.+|+|||||.=-++...... .+++.||+...+.--. .+....+.+..+.+.|...-+. ....|+.+..- +++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~~-~~~~DlaLllK-~lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDPP-KEPADLALLLK-TLP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSHT-TSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccCC-CCCcchhhHHH-HHH
Confidence 579999999999998876643 5677777765542222 3334457788888888654433 35689998544 455
Q ss_pred cccchHH-HHHHHHhhcCCCcEEEEEcCCCC--CCChhhHH-HHHHHHHHHHhcCcEEEEEe
Q 008748 232 WLQRDGI-LLLELDRLLRPGGYFVYSSPEAY--AHDPENRR-IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 232 ~~~d~~~-~L~el~RvLkPGG~lvis~P~~~--~~~~e~~~-~~~~l~~l~~~~gw~vv~~~ 289 (555)
.++.... .-.++.+.++- =.+++|.|..- .+.....+ .-..|+.++...+|.+.+.+
T Consensus 183 ~le~q~~g~g~~ll~~~~~-~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALRS-PHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp HHHHHSTTHHHHHHHHSCE-SEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred HHHHHhcchHHHHHHHhCC-CeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeee
Confidence 5433321 22333333332 26666766531 11222222 23478888999999865443
No 365
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=87.62 E-value=3.1 Score=44.49 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--------CCccccCChhhhhHHHHHHHHHcCC--CeE
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALERGI--PST 204 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--------~V~~vdis~~dls~a~i~~A~~rg~--~v~ 204 (555)
|......|++...-.+.+ ..+|||+.+-.|+=++.|.+. .+++-|+++.=+. ++....++-. ...
T Consensus 138 ~rqeavSmlPvL~L~v~p---~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~--~L~~q~~~l~~~~~~ 212 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKP---GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLN--MLVHQLKRLPSPNLL 212 (375)
T ss_pred hhhhhhhccchhhcccCC---CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHH--HHHHHHhccCCccee
Confidence 444555666544433444 358999999999988877763 3445555543222 2222223322 222
Q ss_pred EEEeCCCCCC---------CCCCCccEEEe----ccc-ccc---------cccc--------hHHHHHHHHhhcCCCcEE
Q 008748 205 LGVLGTKRLP---------YPSRSFELAHC----SRC-RID---------WLQR--------DGILLLELDRLLRPGGYF 253 (555)
Q Consensus 205 ~~~~d~~~Lp---------~~d~sFDlVv~----s~~-~l~---------~~~d--------~~~~L~el~RvLkPGG~l 253 (555)
+...++...| .....||-|+| +.. .+. |... .-.+|..-.++||+||.+
T Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~l 292 (375)
T KOG2198|consen 213 VTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRL 292 (375)
T ss_pred eecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEE
Confidence 3333333222 23346999987 111 011 1100 123788889999999999
Q ss_pred EEEcCC
Q 008748 254 VYSSPE 259 (555)
Q Consensus 254 vis~P~ 259 (555)
+.|+-.
T Consensus 293 VYSTCS 298 (375)
T KOG2198|consen 293 VYSTCS 298 (375)
T ss_pred EEeccC
Confidence 998844
No 366
>PRK00811 spermidine synthase; Provisional
Probab=87.55 E-value=0.44 Score=49.19 Aligned_cols=104 Identities=12% Similarity=0.192 Sum_probs=55.8
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc------cc-----cc-hhcccccCCCCCCC
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------GL-----IG-TVHDWCESFSTYPR 460 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r------gl-----~g-~~~~~ce~~~typr 460 (555)
+....-++|+|+++|.|+.+..+.+. ++- +|+-++-. ..+.+.-+. |+ +- +..|--+-+.+-+.
T Consensus 72 ~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~ 149 (283)
T PRK00811 72 FAHPNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETEN 149 (283)
T ss_pred hhCCCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCC
Confidence 33456789999999999999988775 343 34434322 222222110 11 00 11121111222356
Q ss_pred ccchhhccccccccccC-CCChhhhhhhhcccccCCceEEEe
Q 008748 461 TYDLLHAWKVFSEIEER-GCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 461 tydl~h~~~~~s~~~~~-~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+||+|=.+. +...... .---..++-++-|+|+|||.+++.
T Consensus 150 ~yDvIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 150 SFDVIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cccEEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 899986432 2111000 000145667889999999999985
No 367
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=87.26 E-value=2.4 Score=43.07 Aligned_cols=122 Identities=12% Similarity=0.253 Sum_probs=80.4
Q ss_pred cceeEeeccCCcchhhhhccCC-C-ceEEEecccCCCCch--------h--HHhhcc--ccchhcccccCCCCCCCccch
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMSARL--------K--IIYDRG--LIGTVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~~~l--------~--~i~~rg--l~g~~~~~ce~~~typrtydl 464 (555)
....|+|++||.|.-+=+|..+ + += ++-++-.-++ . -.-+|. +=+=..+|+.++.. .+||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~---I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~ 118 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAK---IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDL 118 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCc---EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCE
Confidence 3788999999999776666554 2 22 2222211111 1 122222 11334456666554 37888
Q ss_pred hhcccccccc--------------ccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccceecc
Q 008748 465 LHAWKVFSEI--------------EERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSE 525 (555)
Q Consensus 465 ~h~~~~~s~~--------------~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~~~ 525 (555)
|=++==|=.. +.-.|++++++-=-=++|+|+|++.+==..+-+.++-+++++++|+...+.
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEE
Confidence 8765443211 123488999998899999999999998889999999999999999986443
No 368
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=87.21 E-value=0.41 Score=44.96 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=36.0
Q ss_pred ccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 452 CESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 452 ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
++.++.-+.+||++=+...+..+ -+...+|-||-|+|+|||.++|-|-.
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNV----VDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcC----CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 45555445699999766555422 24678899999999999999987643
No 369
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.03 E-value=12 Score=37.37 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=74.0
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCC-CCCccEEEecccccc
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 231 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~ 231 (555)
++.||||-.|++..+|.+. .+++.|+++.-+..+..++.+... ..+....+|. -.++. +..+|+|+...+.=
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG- 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG- 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH-
Confidence 4999999999999999874 577889998877666655544332 2345555554 12233 34699988765311
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
.--...|.+-..-|+.=-++++ .|.. + -..+.+.+...+|.+..+.-
T Consensus 97 --~lI~~ILee~~~~l~~~~rlIL-QPn~--~-------~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 97 --TLIREILEEGKEKLKGVERLIL-QPNI--H-------TYELREWLSANSYEIKAETI 143 (226)
T ss_pred --HHHHHHHHHhhhhhcCcceEEE-CCCC--C-------HHHHHHHHHhCCceeeeeee
Confidence 1113355666666654334554 3332 1 13577888999998886543
No 370
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=86.84 E-value=0.39 Score=48.91 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=67.6
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCCCchhHHhhccccchhcccccCCCCCCCccchhhccccccccccCCCCh
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSF 481 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~ 481 (555)
-|-||+||=+-.|.. ...+|--|-+|++...=+.-=|-. .+-=.+|.|+ |--++|.+.. ++
T Consensus 183 vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~V~~cDm~~-------------vPl~d~svDv--aV~CLSLMgt---n~ 243 (325)
T KOG3045|consen 183 VIADFGCGEAKIASS-ERHKVHSFDLVAVNERVIACDMRN-------------VPLEDESVDV--AVFCLSLMGT---NL 243 (325)
T ss_pred EEEecccchhhhhhc-cccceeeeeeecCCCceeeccccC-------------CcCccCcccE--EEeeHhhhcc---cH
Confidence 488999999877652 233677777777765322111100 1223467786 4466775544 49
Q ss_pred hhhhhhhcccccCCceEEEecchhHHHHHHHHH---hhcCccce
Q 008748 482 EDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFI---TALKWDGW 522 (555)
Q Consensus 482 ~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~---~~~~w~~~ 522 (555)
.+.+.|..|||+|||.++|-+-..-...|+.++ +.|..+..
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 999999999999999999987665555555544 56777763
No 371
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=86.41 E-value=5.1 Score=39.21 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCCh
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAP 185 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~ 185 (555)
+..+|||+||..|+++....++ .|.|+|+-.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 3569999999999999887764 466666543
No 372
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=86.32 E-value=3.5 Score=41.93 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCEEEEECCCCcHHHHHHhc---CCCccccCChhh--hhHHH--HHHH-HHcCCCeEEEEeC---CCCCCCCCCC-ccEE
Q 008748 156 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPND--VHENQ--IQFA-LERGIPSTLGVLG---TKRLPYPSRS-FELA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~d--ls~a~--i~~A-~~rg~~v~~~~~d---~~~Lp~~d~s-FDlV 223 (555)
..+||++|+|+|.-+...+- .++.-.|..... +.... .+.+ .+.|..+.....+ .....+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 45799999999955544443 244444443221 11110 0111 1112233333322 1111111123 9999
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+++.+ +......+.++.-+...|-.+|.+++..+-
T Consensus 167 lasDv-vy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 167 LASDV-VYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEeee-eecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 99985 444566677899999999999977766543
No 373
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=86.17 E-value=1.5 Score=37.15 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=55.2
Q ss_pred EeeccCCcch--hhhhccCCCceEEEecccCCC-CchhHHhh----cc---ccchhcccccC-CCCCC-Cccchhhcccc
Q 008748 403 VMDMNSNLGG--FAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RG---LIGTVHDWCES-FSTYP-RTYDLLHAWKV 470 (555)
Q Consensus 403 ~~dm~~~~g~--faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rg---l~g~~~~~ce~-~~typ-rtydl~h~~~~ 470 (555)
++|.+||.|. +.+.+......+.. ++.. ..+...-. .+ +-.+..+.... ++.-. .++|++ ....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 56666654434444 3322 22222111 11 12333344432 33322 389998 5554
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
..... ....++-++-|+|+|+|.+++.+..
T Consensus 128 ~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLL----PPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcC----CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 43111 1788999999999999999987654
No 374
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=86.02 E-value=1 Score=45.95 Aligned_cols=91 Identities=20% Similarity=0.401 Sum_probs=62.5
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCCCch-hHHhhcccc-chhcccccCCCCCCCccchhhcccccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARL-KIIYDRGLI-GTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l-~~i~~rgl~-g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
+..+++|++||-|+--+.|... .=+|.-++.+-+. --.-+||.- =-..||-+. +..||+|-+-+|+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvLD---- 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVLD---- 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhhh----
Confidence 5678999999999998888531 1134444444222 234568862 123346543 56799999999887
Q ss_pred CCCCh-hhhhhhhcccccCCceEEEe
Q 008748 477 RGCSF-EDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 477 ~~c~~-~~~~~e~drilrp~g~~i~r 501 (555)
||.- ..+|-+|-+-|+|+|.+|+-
T Consensus 163 -Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 -RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 4554 57788999999999999965
No 375
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=85.98 E-value=0.72 Score=46.29 Aligned_cols=95 Identities=12% Similarity=0.196 Sum_probs=50.7
Q ss_pred CCCcceeEeeccCCcch----hhhhccCCCceEEEecccCCC-CchhH----Hhhccc---cch-hcccccCCCC----C
Q 008748 396 QKNTFRNVMDMNSNLGG----FAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGL---IGT-VHDWCESFST----Y 458 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~----faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl---~g~-~~~~ce~~~t----y 458 (555)
+...-++|+|+++|+|. +|+++... - .|+-++.. ..+.+ +-.-|+ |-+ ..|..+.++. .
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~-g---~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~ 140 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPED-G---RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND 140 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCC-C---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC
Confidence 44457799999988886 34444321 1 23333322 22222 222343 111 1233333322 1
Q ss_pred -CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 459 -PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 459 -prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
..+||++-.+.--. ...+++-++=|.|||||.+|+.
T Consensus 141 ~~~~fD~VfiDa~k~-------~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 141 PKPEFDFAFVDADKP-------NYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCCEEEECCCHH-------HHHHHHHHHHHhcCCCeEEEEE
Confidence 34899987654211 2445666778999999999964
No 376
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=85.97 E-value=0.76 Score=46.15 Aligned_cols=105 Identities=23% Similarity=0.283 Sum_probs=60.1
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH---------HhhccccchhcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI---------IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~---------i~~rgl~g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
.+|+|++||.|+|+-.|....+ -.|+-++.. +.|-- .|+.-=|- +.+|-+-.+ |+.-+|-.
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~------d~~~~Dvs 147 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFP------DFATFDVS 147 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCC------CceeeeEE
Confidence 4899999999999998887643 234444432 34432 12221122 235555432 34333333
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEE-------------------Eecc---hhHHHHHHHHHhhcCccce
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVI-------------------IRDK---SSIINYIRKFITALKWDGW 522 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i-------------------~rd~---~~~~~~~~~~~~~~~w~~~ 522 (555)
|. ++.-+|-.|.+.|+| |.+| +||. ..+++++...+..+.|++.
T Consensus 148 fi-------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 148 FI-------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred Ee-------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 32 133356666777777 6555 5564 3457777777788888873
No 377
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=85.86 E-value=1.4 Score=45.01 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCCcceeEeeccCCcchhhhhccCCCceE-----EEecccC-CCCchhHHhhccccc-hhcc----cc----cCCCCCCC
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKDKDVWV-----MNVAPVR-MSARLKIIYDRGLIG-TVHD----WC----ESFSTYPR 460 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~~~~wv-----mnv~p~~-~~~~l~~i~~rgl~g-~~~~----~c----e~~~typr 460 (555)
+.+.-=+++||.+|+|--|=.+.+.--=+ -+|+-.| .|+.|.+--.|-.=+ .+-+ |- |.+++=..
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 33444789999999998777765421000 2444444 458888866665322 2222 32 45553336
Q ss_pred ccchhhccccccccccCCC-ChhhhhhhhcccccCCceEEEecchhHH-HHHHHHHhhcCcc
Q 008748 461 TYDLLHAWKVFSEIEERGC-SFEDLLIEMDRMLRPEGFVIIRDKSSII-NYIRKFITALKWD 520 (555)
Q Consensus 461 tydl~h~~~~~s~~~~~~c-~~~~~~~e~drilrp~g~~i~rd~~~~~-~~~~~~~~~~~w~ 520 (555)
+||+.--. |+ .+.| .+.-.|=|+-|+|+|||.+.+=+-..+= ..++.+..+--.+
T Consensus 177 s~D~yTia--fG---IRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 177 SFDAYTIA--FG---IRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred cceeEEEe--cc---eecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 99986522 22 2223 4778999999999999999887766655 4555555543333
No 378
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=85.71 E-value=3.2 Score=41.03 Aligned_cols=129 Identities=20% Similarity=0.311 Sum_probs=81.8
Q ss_pred eEeeccCCcchhhhhccC-CCceEEEecccCCCCch-hH----Hhhcccc----chhcccccC-------CCCCCCccch
Q 008748 402 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARL-KI----IYDRGLI----GTVHDWCES-------FSTYPRTYDL 464 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~~~l-~~----i~~rgl~----g~~~~~ce~-------~~typrtydl 464 (555)
.|+.+++|+|-=|+.+.. .|- +---|++-...+ +- |-+-|+- .+.-|-+++ -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 899999999965444431 132 224466655333 32 4566753 333343333 2336789999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEE-------------------------------EecchhHHHHHHHH
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI-------------------------------IRDKSSIINYIRKF 513 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i-------------------------------~rd~~~~~~~~~~~ 513 (555)
|=+.+++- +..- -..+-++-+.-|+|+|||.++ ||| ++.|..+
T Consensus 106 i~~~N~lH-I~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD----~e~v~~l 179 (204)
T PF06080_consen 106 IFCINMLH-ISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRD----IEDVEAL 179 (204)
T ss_pred eeehhHHH-hcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccC----HHHHHHH
Confidence 88777664 2211 125788999999999999999 566 7788889
Q ss_pred HhhcCccceecccccccccCCCCCceEEEEEe
Q 008748 514 ITALKWDGWLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 514 ~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
+..-..+.. .++ +.| ...++||.+|
T Consensus 180 A~~~GL~l~-~~~---~MP---ANN~~Lvfrk 204 (204)
T PF06080_consen 180 AAAHGLELE-EDI---DMP---ANNLLLVFRK 204 (204)
T ss_pred HHHCCCccC-ccc---ccC---CCCeEEEEeC
Confidence 988777652 111 233 3578999887
No 379
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=85.46 E-value=0.28 Score=42.72 Aligned_cols=95 Identities=19% Similarity=0.370 Sum_probs=54.3
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhcc-------ccchhcccccCCCCCCCccchhhccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRG-------LIGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rg-------l~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
.|||++||.|.|+.++...- ..+|+=++-. ..+.+ +-..| ..|=+.+..+.++. ..||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECC
Confidence 59999999999998887532 2333333322 11111 11111 13334444444543 7899998887
Q ss_pred cccccccC----CCChhhhhhhhcccccCCceEEE
Q 008748 470 VFSEIEER----GCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 470 ~~s~~~~~----~c~~~~~~~e~drilrp~g~~i~ 500 (555)
-|...... +=....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 77632100 01345778899999999999875
No 380
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=85.32 E-value=0.81 Score=43.69 Aligned_cols=98 Identities=26% Similarity=0.407 Sum_probs=55.3
Q ss_pred CCcceeEeeccCCcc--hhhhhccCCCceEEEecccCCCCchhH---Hhhc------c-ccchhcccccCC--CC-CCCc
Q 008748 397 KNTFRNVMDMNSNLG--GFAAALKDKDVWVMNVAPVRMSARLKI---IYDR------G-LIGTVHDWCESF--ST-YPRT 461 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g--~faa~l~~~~~wvmnv~p~~~~~~l~~---i~~r------g-l~g~~~~~ce~~--~t-yprt 461 (555)
..+=++|++.+||.| |.+||... ....||-+|.+..|+. -.++ + +--.-.||-+.. .. -++.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred hcCCceEEEECCccchhHHHHHhcc---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 345579999999888 88888771 2234555555444442 1121 1 234557898743 11 2468
Q ss_pred cchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 462 YDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 462 ydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
||+|-|+.++=. .. ..+.++-=++++|.|+|.+++-
T Consensus 120 ~D~IlasDv~Y~-~~---~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 120 FDVILASDVLYD-EE---LFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp BSEEEEES--S--GG---GHHHHHHHHHHHBTT-TTEEEE
T ss_pred CCEEEEecccch-HH---HHHHHHHHHHHHhCCCCEEEEE
Confidence 999999998752 12 2567777789999999998864
No 381
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=84.14 E-value=1 Score=45.95 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=51.7
Q ss_pred eeEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhHHhh----ccc--cchhcccccCCCCCCCccchhhcc--
Q 008748 401 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIYD----RGL--IGTVHDWCESFSTYPRTYDLLHAW-- 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~i~~----rgl--~g~~~~~ce~~~typrtydl~h~~-- 468 (555)
..|+||.||.||++.+|.. ..- .|+-++.. .-|..+-+ .|+ +-+++.=...++.....||.|=.+
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3599999999999876643 111 35555543 34433322 243 112221112233223458887543
Q ss_pred ----ccccccccC--CC----------ChhhhhhhhcccccCCceEEEe
Q 008748 469 ----KVFSEIEER--GC----------SFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 469 ----~~~s~~~~~--~c----------~~~~~~~e~drilrp~g~~i~r 501 (555)
|++...... +- .-..||-++=++|||||.++..
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 332210000 00 0135888889999999999977
No 382
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=84.09 E-value=0.53 Score=45.96 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=68.3
Q ss_pred eeEeeccCCcchhhhhccC-CCceEEEecccCC-CCchhHHhhccccchhcccccCCCCCCC-ccchhhccccccccccC
Q 008748 401 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPR-TYDLLHAWKVFSEIEER 477 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~-~~~l~~i~~rgl~g~~~~~ce~~~typr-tydl~h~~~~~s~~~~~ 477 (555)
-.|||.+||-|.+.+.|.+ +.|=+.- ++- +..+.-...||+-=+-+|.-+.++.||- +||.+=.+.-+..+..
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~G---vEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~- 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYG---VEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR- 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEE---EecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence 4699999999999999986 4444433 232 3556678899999888999999998886 9999876666553322
Q ss_pred CCChhhhhhhhcccccCCceEEEe
Q 008748 478 GCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 478 ~c~~~~~~~e~drilrp~g~~i~r 501 (555)
-+.+|-||= |=|..+|+.
T Consensus 91 ---P~~vL~Eml---RVgr~~IVs 108 (193)
T PF07021_consen 91 ---PDEVLEEML---RVGRRAIVS 108 (193)
T ss_pred ---HHHHHHHHH---HhcCeEEEE
Confidence 678999995 446677765
No 383
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.06 E-value=0.91 Score=45.50 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC-------------CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------- 214 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-------------~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-------- 214 (555)
..+++|+.+..|+++..|.++ .|+++|+-+... -..+.-.++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----------I~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----------IEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----------cCceEEeecccCCHhHHHHHHHH
Confidence 468999999999999888753 155565544221 122344455543321
Q ss_pred CCCCCccEEEeccc----ccccccch------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 008748 215 YPSRSFELAHCSRC----RIDWLQRD------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 281 (555)
Q Consensus 215 ~~d~sFDlVv~s~~----~l~~~~d~------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~ 281 (555)
|.....|+|+|-.+ .+|-++.. -..|.-...+|||||.|+--.- +.....-.+.++..++++.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif----Rg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF----RGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh----ccCchHHHHHHHHHHhhce
Confidence 44457899998432 23322221 2256667789999999985221 1111223455666666543
No 384
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=82.99 E-value=7.9 Score=40.44 Aligned_cols=105 Identities=18% Similarity=0.285 Sum_probs=58.8
Q ss_pred eEeeccCCcchhhhhccCC-C--ceEEEecccCCC--CchhHHhhccccch--h-cccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDK-D--VWVMNVAPVRMS--ARLKIIYDRGLIGT--V-HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~-~--~wvmnv~p~~~~--~~l~~i~~rgl~g~--~-~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
+|+|.+||+|-.++.|.+. | -++|-=+...+- ...+ +-+-|+=++ + -|-+|+-. ..||+|=.+==|-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l~~N~~~~~~v~~s~~~~~v~---~kfd~IisNPPfh~ 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-LAANGVENTEVWASNLYEPVE---GKFDLIISNPPFHA 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-HHHcCCCccEEEEeccccccc---ccccEEEeCCCccC
Confidence 9999999999999999754 3 355532222110 1111 223344442 2 23344333 48999876666652
Q ss_pred cccCCCChh-----hhhhhhcccccCCceEEE--ecchhHHHHHHHHH
Q 008748 474 IEERGCSFE-----DLLIEMDRMLRPEGFVII--RDKSSIINYIRKFI 514 (555)
Q Consensus 474 ~~~~~c~~~-----~~~~e~drilrp~g~~i~--rd~~~~~~~~~~~~ 514 (555)
.+. .. -|+-+-=+-|++||-++| .-....-.+++++-
T Consensus 237 -G~~---v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 237 -GKA---VVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred -Ccc---hhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 111 22 466667788999997765 43333444444433
No 385
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=80.86 E-value=4.4 Score=46.81 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=45.3
Q ss_pred EEEEeCCCC-CCCCCCCccEEEecccccccccch----HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHH
Q 008748 204 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 278 (555)
Q Consensus 204 ~~~~~d~~~-Lp~~d~sFDlVv~s~~~l~~~~d~----~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~ 278 (555)
.+..+|+.. ++--...||+++.-. +.=..++ ..++..+.|+++|||.|+-.+.. ..+..-+
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD~--FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a------------~~vr~~l 215 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLDG--FAPAKNPDMWSPNLFNALARLARPGATLATFTSA------------GFVRRGL 215 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeCC--CCCccChhhccHHHHHHHHHHhCCCCEEEEeehH------------HHHHHHH
Confidence 355566432 221225699998532 1111222 56999999999999999953321 2567788
Q ss_pred HhcCcEEEEE
Q 008748 279 KSMCWKIVSK 288 (555)
Q Consensus 279 ~~~gw~vv~~ 288 (555)
...||++.+.
T Consensus 216 ~~~GF~v~~~ 225 (662)
T PRK01747 216 QEAGFTVRKV 225 (662)
T ss_pred HHcCCeeeec
Confidence 9999988754
No 386
>PRK01581 speE spermidine synthase; Validated
Probab=79.28 E-value=4.1 Score=43.83 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=75.3
Q ss_pred CCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh--------cc-c-----cchhcccccCCCCCCC
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD--------RG-L-----IGTVHDWCESFSTYPR 460 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~--------rg-l-----~g~~~~~ce~~~typr 460 (555)
...+-++|+++|+|.|+.+..+...+- |.+|+=++-. .-+.+.-+ +| + --++.|--+-...-++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 345678999999999998888876542 2334434322 22222221 11 1 0012222222222346
Q ss_pred ccchhhccccccccc--cCCCChhhhhhhhcccccCCceEEEecc-----hhHHHHHHHHHhhcCccceecccccccccC
Q 008748 461 TYDLLHAWKVFSEIE--ERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDGWLSEVEPRIDAL 533 (555)
Q Consensus 461 tydl~h~~~~~s~~~--~~~c~~~~~~~e~drilrp~g~~i~rd~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 533 (555)
+||+|=.+- +.... ..+---..++-.+-|.|+|||.+++... .+++..+.+.++..--.+..... --|-
T Consensus 226 ~YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t---~vPs 301 (374)
T PRK01581 226 LYDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHT---IVPS 301 (374)
T ss_pred CccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEE---ecCC
Confidence 799887762 21110 0001113567788999999999998744 22333344444444333321111 1111
Q ss_pred CCCCceEEEEEecccc
Q 008748 534 SSSEERVLIAKKKLWD 549 (555)
Q Consensus 534 ~~~~~~~l~~~k~~w~ 549 (555)
-.+.-.+++|.|.-..
T Consensus 302 yg~~WgF~~as~~~~~ 317 (374)
T PRK01581 302 FGTDWGFHIAANSAYV 317 (374)
T ss_pred CCCceEEEEEeCCccc
Confidence 1123678888876543
No 387
>PLN02366 spermidine synthase
Probab=78.85 E-value=1.4 Score=46.31 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=54.2
Q ss_pred CCcceeEeeccCCcchhhhhccCCC-ceEEEecccCC------CCchhHHhhccc-----cchhcccccCCCCC-CCccc
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRM------SARLKIIYDRGL-----IGTVHDWCESFSTY-PRTYD 463 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~~~-~wvmnv~p~~~------~~~l~~i~~rgl-----~g~~~~~ce~~~ty-prtyd 463 (555)
...-++|+++++|.|+.+..+.+.| +..+-+|=.+. ...++-+ ..|+ -=+..|=-+-.... .+.||
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 4557899999999999999988764 43222222221 1112211 0111 01111210011222 46899
Q ss_pred hhhcccccccccc-CCCChhhhhhhhcccccCCceEEEe
Q 008748 464 LLHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 464 l~h~~~~~s~~~~-~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+|-.+. +..... ..---..++-.+-|.|+|||.+++.
T Consensus 168 vIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 997653 221110 0000135677889999999999874
No 388
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.74 E-value=0.66 Score=43.84 Aligned_cols=47 Identities=26% Similarity=0.250 Sum_probs=37.4
Q ss_pred cccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 451 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 451 ~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
|=..|. ||+-|+|-|.|++.+++-+ +....+=|-.|+|||||++-|.
T Consensus 39 ~e~~F~--dns~d~iyaeHvlEHlt~~--Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 39 NESMFE--DNSVDAIYAEHVLEHLTYD--EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhccCC--CcchHHHHHHHHHHHHhHH--HHHHHHHHHHHHhCcCcEEEEE
Confidence 334455 5999999999998877643 4667888999999999998765
No 389
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=78.50 E-value=15 Score=37.72 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=67.3
Q ss_pred EEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC--CCCccEEEeccccccc
Q 008748 158 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP--SRSFELAHCSRCRIDW 232 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~--d~sFDlVv~s~~~l~~ 232 (555)
+++|+-||.|.++..+.+. .+.++|+++... +..+..... .+...|+..+... ...+|+++.+..--.|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-----~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-----ETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-----HHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 5999999999987777654 345566655433 333333222 2455666655422 2569999975310100
Q ss_pred --------ccch-HHHHHHH---HhhcCCCcEEEEE-cCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 --------LQRD-GILLLEL---DRLLRPGGYFVYS-SPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 --------~~d~-~~~L~el---~RvLkPGG~lvis-~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
..+. ..++.++ .+.++|. ++++- ++..... .....+..+.+.++++||.+....-.
T Consensus 76 S~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~--~~~~~~~~i~~~l~~~GY~~~~~~l~ 144 (275)
T cd00315 76 SIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTH--DNGNTLKVILNTLEELGYNVYWKLLN 144 (275)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhcc--CchHHHHHHHHHHHhCCcEEEEEEEE
Confidence 1122 2244444 4445665 33332 2332111 12246778888899999987554433
No 390
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=77.74 E-value=2.2 Score=37.93 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcCCCccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSHDIIAM 181 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~~V~~v 181 (555)
+.....|||||.|.+..-|.+....|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~ 84 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGW 84 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcc
Confidence 345799999999999888887533333
No 391
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=77.49 E-value=3.3 Score=39.97 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-cEEEEEeeceEEeecC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVSKKDQTVIWAKP 298 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-w~vv~~~~~~~iw~KP 298 (555)
|.......+.++.|+|||||.+++......... ..+..+.+..| |... ...+|.|+
T Consensus 31 y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~----~~iiW~K~ 87 (231)
T PF01555_consen 31 YLEWMEEWLKECYRVLKPGGSIFIFIDDREIAG-------FLFELALEIFGGFFLR----NEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECT-------HHHHHHHHHHTT-EEE----EEEEEE-S
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEecchhhhH-------HHHHHHHHHhhhhhee----ccceeEec
Confidence 333346689999999999999998765543221 12334455556 8666 46689887
No 392
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=77.19 E-value=8.4 Score=41.11 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=55.2
Q ss_pred CCEEEEECCCC-cHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-C-----CC-CCCCccEE
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-----PY-PSRSFELA 223 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-L-----p~-~d~sFDlV 223 (555)
..+||.+|||. |.++..+++. .+++++. ++.+.+.+++.+ ...++.....+ + .+ ..+.+|+|
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~-----~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDR-----VPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----CHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 35899999987 7777777764 1344433 344556666652 22222111111 1 11 22369988
Q ss_pred Eecccc--------------cccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 224 HCSRCR--------------IDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 224 v~s~~~--------------l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+-.-.. ++-..+....+.++.+.|+++|.+++...
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 853210 00012335578999999999999998753
No 393
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=76.96 E-value=2.2 Score=46.76 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=53.2
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhh----cccc---chhcccccCCC-CCCCccchhhcc-
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYD----RGLI---GTVHDWCESFS-TYPRTYDLLHAW- 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~----rgl~---g~~~~~ce~~~-typrtydl~h~~- 468 (555)
.+|+||+||.||.+.+|... +- -.|+-+|-. +-|..+-+ .|+- -+-.|..+ ++ ..+.+||.|=.+
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVDA 315 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEECC
Confidence 36999999999988766432 11 145555543 55554432 2441 11233332 22 123578887543
Q ss_pred -----cccccccc--CCC----------ChhhhhhhhcccccCCceEEEe
Q 008748 469 -----KVFSEIEE--RGC----------SFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 469 -----~~~s~~~~--~~c----------~~~~~~~e~drilrp~g~~i~r 501 (555)
|++...-. .+- .-..||-+.=+.|+|||.+++.
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 32221000 000 0135677888999999999976
No 394
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=76.79 E-value=13 Score=37.95 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=62.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC--------CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCC----CCCCCCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT----KRLPYPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--------~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~----~~Lp~~d~sFDl 222 (555)
+.+.+|+|+|+..=++.|.+. ..+.+|++..-++.....+.++. +.++.-..+|. ..+| .++=-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 468999999999877777642 56678888876666655555443 34444455553 2233 222233
Q ss_pred EEeccccc-ccccch-HHHHHHHHhhcCCCcEEEEEc
Q 008748 223 AHCSRCRI-DWLQRD-GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 223 Vv~s~~~l-~~~~d~-~~~L~el~RvLkPGG~lvis~ 257 (555)
++...+.+ ++.+++ ..+|..+..+|+||-+|++-+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 33222223 333333 558999999999999999854
No 395
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=76.69 E-value=1.9 Score=42.71 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=22.8
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEeccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPV 430 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~ 430 (555)
..|+|.+||.|-.|..|.++ .|.-+=++|+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~ 67 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI 67 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH
Confidence 48999999999999999876 4555444444
No 396
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.31 E-value=15 Score=34.61 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=41.3
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCC
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPS 217 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d 217 (555)
.+..+.+|+|.|.|.+-...++. .-+|+++++.-+..+....-+.. +....|..-|+....+.+
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 33468999999999887776653 56788888876655544332222 345566666665555544
No 397
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=76.14 E-value=15 Score=40.96 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCC-CeEE
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGI-PSTL 205 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~rg~-~v~~ 205 (555)
..+.+.+++.. ....+|+|-.||+|++...... ..+.|.++......-+..+....... ++..
T Consensus 174 v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 174 VSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred HHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 44555555542 2234899999999987655442 12456666655555554444433221 2455
Q ss_pred EEeCCCCCCC-----CCCCccEEEecccc--ccccc---------------------c-hHHHHHHHHhhcCCCcEEEEE
Q 008748 206 GVLGTKRLPY-----PSRSFELAHCSRCR--IDWLQ---------------------R-DGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 206 ~~~d~~~Lp~-----~d~sFDlVv~s~~~--l~~~~---------------------d-~~~~L~el~RvLkPGG~lvis 256 (555)
..+|...-|. ..+.||.|+++--. ..|.. . ...+++.+...|+|||+..|+
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 5565433332 33679999974210 11111 0 145899999999999988887
Q ss_pred cCCC
Q 008748 257 SPEA 260 (555)
Q Consensus 257 ~P~~ 260 (555)
.|..
T Consensus 326 l~~g 329 (489)
T COG0286 326 LPDG 329 (489)
T ss_pred ecCC
Confidence 7764
No 398
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=75.18 E-value=2.5 Score=42.06 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=54.4
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-Cchh-HHhhccccchh--------------cccccCCCCC---C-Cc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLK-IIYDRGLIGTV--------------HDWCESFSTY---P-RT 461 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~-~i~~rgl~g~~--------------~~~ce~~~ty---p-rt 461 (555)
.|+|.+||.|--|..|.++.. +|+-++-. .-+. ..-++|+-... +-+|.-|..+ + -+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 799999999999999987632 45555533 2222 23466664321 1122222221 1 14
Q ss_pred cchhhccccccccccCCCChhhhhhhhcccccCCceEEE
Q 008748 462 YDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 462 ydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
||++-...+|..+.. ..-..++-.|.++|+|||.+++
T Consensus 117 fd~v~D~~~~~~l~~--~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIALPE--EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhCCH--HHHHHHHHHHHHHcCCCCeEEE
Confidence 566655555443211 1235778899999999986443
No 399
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=75.13 E-value=1.8 Score=45.66 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=46.1
Q ss_pred eeEeeccCCcchhhhhccCC---CceEEEecccCCC-CchhH----Hhhccccc---hhcccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARLKI----IYDRGLIG---TVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~---~~wvmnv~p~~~~-~~l~~----i~~rgl~g---~~~~~ce~~~typrtydl~h~~~ 469 (555)
.+|+|++||.|.+++.|.+. .-- |+-++.. .-+.. +-..|+-. +..|..+.... ...||+|..+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~---VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~~~ 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGL---VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFVTV 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCE---EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEECC
Confidence 47999999999999888642 112 2323322 22211 22223311 11232222211 24688887543
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
- +..+.-.+-|.|+|||.+++-.
T Consensus 158 g----------~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 G----------VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred c----------hHHhHHHHHHhcCCCCEEEEEe
Confidence 2 2223334567899999988743
No 400
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=74.35 E-value=5.4 Score=41.77 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=65.7
Q ss_pred hccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhhccccchhc--c----cccCCCCCCCccchh
Q 008748 393 TVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDRGLIGTVH--D----WCESFSTYPRTYDLL 465 (555)
Q Consensus 393 ~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~rgl~g~~~--~----~ce~~~typrtydl~ 465 (555)
+.|..=+=|.|+|++||-|-|.=.|... +--|.-+=|..- -.+++-+-+-++|.-. - --|.++. ..+||++
T Consensus 109 p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 109 PHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred hhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEE
Confidence 3343444578999999999998777543 445555544322 2333333333443211 0 1234455 6899999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
=+.|||=+ +=+-.+.|.++=..|||||-+|+.
T Consensus 187 F~MGVLYH----rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 187 FSMGVLYH----RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred EEeeehhc----cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 99998763 234667888999999999999965
No 401
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=74.07 E-value=15 Score=37.39 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=61.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC----CCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp----~~d~sFDlVv~s 226 (555)
..+||=+|+++|..-.+..+- -|.+++++...- ...++.|.+| .++.-++-|+. .| ..-+-.|+|++-
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkR-tNiiPIiEDAr-hP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKR-TNIIPIIEDAR-HPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred CceEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhcc-CCceeeeccCC-CchheeeeeeeEEEEecc
Confidence 358999999999877666642 466777776432 3345666665 45544455543 22 112356777642
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+...+....+..+..-.||+||.|+++...
T Consensus 234 ---vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 234 ---VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred ---CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 222222244677888999999999998754
No 402
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=73.98 E-value=27 Score=37.63 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=59.9
Q ss_pred CCCEEEEECCCCc----HHHHHHhcC-------CCccccC----ChhhhhH---HHHHHHHHcCCCeEEEEe---CCCCC
Q 008748 155 NIRNVLDVGCGVA----SFGAYLLSH-------DIIAMSL----APNDVHE---NQIQFALERGIPSTLGVL---GTKRL 213 (555)
Q Consensus 155 ~~~~VLDIGCGtG----~~a~~La~~-------~V~~vdi----s~~dls~---a~i~~A~~rg~~v~~~~~---d~~~L 213 (555)
+.-.|+|+|.|.| .+...|+.+ +||+++. +...+.+ ...++|+..|.+..|... +.+.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 3458999999999 455666653 6888877 4333333 334567777888777663 23333
Q ss_pred C-----CCCCCccEEEecccccccccc-------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 214 P-----YPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 214 p-----~~d~sFDlVv~s~~~l~~~~d-------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
. ..++..=+|-|.+ .+|+..+ +...+-...|-|+|.- ++++.+..
T Consensus 190 ~~~~l~~~~~E~laVn~~~-~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v-vv~~E~ea 246 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMF-QLHHLLDESGALENPRDAFLRVIRSLNPKV-VVLVEQEA 246 (374)
T ss_pred CHHHhCccCCcEEEEEeeh-hhhhhccccccccchHHHHHHHHHhcCCCE-EEEEeecC
Confidence 1 2223222333333 4566542 2345667777899984 44444444
No 403
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=73.93 E-value=7.7 Score=40.45 Aligned_cols=104 Identities=15% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH-----HcCCCeEEEEeCCCCC-C-CCCCCccE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL-----ERGIPSTLGVLGTKRL-P-YPSRSFEL 222 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~-----~rg~~v~~~~~d~~~L-p-~~d~sFDl 222 (555)
.+++++|=||-|.|.+.+..+.+ +++-+|+...-+ +...++.. -.+..+.+..+|.-.+ . ...++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vi-e~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVI-ESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHH-HHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 35678999999999998887765 333333332111 11111111 1145677777773222 1 33688999
Q ss_pred EEecccccccccc----hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 223 AHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 223 Vv~s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
|+.-.+ -.-.+. .+.++..+.+.||+||+++...-.
T Consensus 199 ii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 199 IITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 985321 111111 144788899999999999986633
No 404
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=73.87 E-value=4.3 Score=44.41 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=53.3
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh---hc-cc-cc-hhcccccCCCCC-CCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY---DR-GL-IG-TVHDWCESFSTY-PRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~---~r-gl-~g-~~~~~ce~~~ty-prtydl~h~~~~~ 471 (555)
..|+|++||.|+++.+|... +- -.|+-++.. ..+..+- +| |+ +- +-+|-.+....+ +.+||+|=.+-=+
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~--~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ--AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 46999999999999887643 11 134444532 3443332 22 32 11 122333321112 3578988643322
Q ss_pred ccc---ccC------C---------CChhhhhhhhcccccCCceEEEe
Q 008748 472 SEI---EER------G---------CSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 472 s~~---~~~------~---------c~~~~~~~e~drilrp~g~~i~r 501 (555)
|.. ..+ + .....+|-+.=++|+|||.+++.
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 210 000 0 01236788999999999999975
No 405
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=73.53 E-value=1.7 Score=44.75 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=25.9
Q ss_pred CccEEEecccccccccchHHH-HHHHHhhcCCCcEEEEEcCCCC
Q 008748 219 SFELAHCSRCRIDWLQRDGIL-LLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 219 sFDlVv~s~~~l~~~~d~~~~-L~el~RvLkPGG~lvis~P~~~ 261 (555)
.||+|.++.. +.-......+ ......+++++|.++++....|
T Consensus 196 ~ydlIlsSet-iy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~y 238 (282)
T KOG2920|consen 196 HYDLILSSET-IYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLY 238 (282)
T ss_pred chhhhhhhhh-hhCcchhhhhHhhhhhhcCCccchhhhhhHhhc
Confidence 6899988763 2222222333 5566778888998887654433
No 406
>KOG2730 consensus Methylase [General function prediction only]
Probab=73.34 E-value=2.6 Score=42.11 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=43.7
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC----CCCCCCCccEEEec
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR----LPYPSRSFELAHCS 226 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~----Lp~~d~sFDlVv~s 226 (555)
..|+|.-||.|..+...+-+ .|+++|++|.-+.-+. ..++--|. .+.|.++|..+ +.+....+|+|.-+
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak-hNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR-HNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh-ccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 47999999999888777653 7889999987663333 22222243 47888888543 33433335566543
No 407
>PRK10742 putative methyltransferase; Provisional
Probab=72.65 E-value=14 Score=37.77 Aligned_cols=70 Identities=13% Similarity=-0.025 Sum_probs=43.1
Q ss_pred EEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-----C----CCeEEEEeCCCCC-CCCCCCccEEEe
Q 008748 158 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-----G----IPSTLGVLGTKRL-PYPSRSFELAHC 225 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-----g----~~v~~~~~d~~~L-p~~d~sFDlVv~ 225 (555)
+|||+=+|.|..+..++.+ .|+.++-++....--.....+-. + .++++..+|...+ .-...+||+|+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence 8999999999999998864 68888888764322221111100 1 2356666664322 212247999996
Q ss_pred cc
Q 008748 226 SR 227 (555)
Q Consensus 226 s~ 227 (555)
--
T Consensus 171 DP 172 (250)
T PRK10742 171 DP 172 (250)
T ss_pred CC
Confidence 44
No 408
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=72.63 E-value=7.2 Score=40.59 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=44.8
Q ss_pred CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCC-CCCChhhHH-HHHHHHHHHHhcCcEEE
Q 008748 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRR-IWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~-~~~~~e~~~-~~~~l~~l~~~~gw~vv 286 (555)
+-||+|+.+....|++.+ ++.++++|||.|++-+... .....+..+ .-.++.++++.+||+.+
T Consensus 221 ~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred CCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 679999987765554332 4888999999999977532 223344444 44589999999999754
No 409
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=72.46 E-value=4.1 Score=44.65 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=60.3
Q ss_pred eeEeeccCCcchhhhhccCC---CceEEEecccCCC-CchhHHhh----ccccchhcccccCCCCC-------CCccchh
Q 008748 401 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARLKIIYD----RGLIGTVHDWCESFSTY-------PRTYDLL 465 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~---~~wvmnv~p~~~~-~~l~~i~~----rgl~g~~~~~ce~~~ty-------prtydl~ 465 (555)
-.|+||+||.||++.+|... .. .|+-++-. .-|..+-+ -|+-. ..--|.-...+ +.+||.|
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQG---EIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEE
Confidence 36999999999998877542 11 24444432 44443322 23311 11112222222 3477876
Q ss_pred hcc------ccccccc-----cCCCC-------hhhhhhhhcccccCCceEEEec----chhHHHHHHHHHhhc-Ccc
Q 008748 466 HAW------KVFSEIE-----ERGCS-------FEDLLIEMDRMLRPEGFVIIRD----KSSIINYIRKFITAL-KWD 520 (555)
Q Consensus 466 h~~------~~~s~~~-----~~~c~-------~~~~~~e~drilrp~g~~i~rd----~~~~~~~~~~~~~~~-~w~ 520 (555)
=.+ |.+.... ...-. ...||-++=|.|||||.+++.. ..+-...|+.++..- .|+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 533 2222100 00001 2578899999999999998662 223445555555543 344
No 410
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=72.31 E-value=12 Score=40.41 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=51.8
Q ss_pred cCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 182 SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 182 dis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
+..|.-+.+..-...+++...+.++..++.+.- .++++||.++-+. ...|+++. ...++++.|.++|||++++-+
T Consensus 256 ~~~P~YL~~e~f~~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D-~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 256 DCCPPYLRPENFEALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSD-HMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCCChhhcHhHHHHHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecc-hhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 344444444443333444456777777754432 4578999999777 68888664 558999999999999999854
No 411
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=70.80 E-value=14 Score=37.72 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=51.3
Q ss_pred CCEEEEECCC-CcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC------CCCCCCccEEEe
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL------PYPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L------p~~d~sFDlVv~ 225 (555)
..+||..|+| .|..+..+++. .+++++. ++...+.+++.+....+ ...... ....+.+|+|+.
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~-----s~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDI-----KEEKLELAKELGADEVL--NSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHHhCCCEEE--cCCCcCHHHHHHHhcCCCceEEEE
Confidence 3578888876 46777777764 3333333 33444555555543211 111110 123457998884
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
... . ...+.++.+.|+++|.++....
T Consensus 239 ~~g-~------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 239 FVG-T------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCC-C------HHHHHHHHHHhhcCCEEEEECC
Confidence 321 1 3478899999999999997653
No 412
>PRK03612 spermidine synthase; Provisional
Probab=70.18 E-value=4.2 Score=45.77 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=63.1
Q ss_pred CcceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhc-cc------------cchh-cccccCCCCCCCcc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR-GL------------IGTV-HDWCESFSTYPRTY 462 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~r-gl------------~g~~-~~~ce~~~typrty 462 (555)
.+-++|+|+++|.|+.+..+.+.+. |-.|+=++- +.-+.+.-+. .+ +-++ .|=-+-....+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4568899999999999977765531 112222222 1122221110 00 0011 11111122346799
Q ss_pred chhhccccccccccCCCC--hhhhhhhhcccccCCceEEEec-----chhHHHHHHHHHhhcCcc
Q 008748 463 DLLHAWKVFSEIEERGCS--FEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWD 520 (555)
Q Consensus 463 dl~h~~~~~s~~~~~~c~--~~~~~~e~drilrp~g~~i~rd-----~~~~~~~~~~~~~~~~w~ 520 (555)
|+|-.|--.. ....... -.+++-++=|+|+|||.+++.- ..+.+.++.+.++.....
T Consensus 375 DvIi~D~~~~-~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 375 DVIIVDLPDP-SNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred CEEEEeCCCC-CCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 9998762111 1000000 1245567789999999999842 355666677777766443
No 413
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=70.11 E-value=3.1 Score=45.74 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=52.5
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHH----hhcccc---chhcccccCCCCCCCccchhhc---
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKII----YDRGLI---GTVHDWCESFSTYPRTYDLLHA--- 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i----~~rgl~---g~~~~~ce~~~typrtydl~h~--- 467 (555)
..|+|++||.||++.+|.+. +. -.|+-++.. .-+..+ -..|+- -+-+|..+.. -+.+||.|=.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcCC
Confidence 57999999999987655421 10 134444433 333332 223441 1222332221 1347888753
Q ss_pred ---ccccccc-----ccCCCCh-------hhhhhhhcccccCCceEEEec
Q 008748 468 ---WKVFSEI-----EERGCSF-------EDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 468 ---~~~~s~~-----~~~~c~~-------~~~~~e~drilrp~g~~i~rd 502 (555)
.|+|... ....-.+ ..||-++=|+|||||.+++..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2333210 0000011 258899999999999999874
No 414
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=69.79 E-value=10 Score=41.63 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 201 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~ 201 (555)
+|...|...+......+.. ....|||||+|||.++.+.+.. .|+++++.-.|.. ++.++..+.|-
T Consensus 47 ky~~gi~~tIte~kh~~~~--gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d-~arkI~~kng~ 114 (636)
T KOG1501|consen 47 KYRLGIEKTITEPKHVLDI--GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVD-LARKIMHKNGM 114 (636)
T ss_pred HHHHHHHHHhcccceeccC--ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHH-HHHHHHhcCCC
Confidence 4555555555544332222 2247999999999998877653 6788877766653 33355555544
No 415
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=69.08 E-value=14 Score=38.56 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=50.5
Q ss_pred CCEEEEECCC-CcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEe--CCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL--GTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~--d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+||=+||| .|.++..+++. .|++++. ++...+.+++.|....+... +...+....+.||+|+-...
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV-----SPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC-----CHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 3578888875 33444445542 2344443 44555677776643222111 11111111235898884431
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
. ...+....++|++||.+++...
T Consensus 245 ------~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ------H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ------C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467888999999999998763
No 416
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=68.12 E-value=5.7 Score=40.17 Aligned_cols=94 Identities=16% Similarity=0.324 Sum_probs=61.2
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcccc-chhcccccC----CCCCCCccchhhccccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLI-GTVHDWCES----FSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~-g~~~~~ce~----~~typrtydl~h~~~~~s~~~ 475 (555)
-|+|.+||-|-++-.|...- -+|+-+|.. ..+.+.-.+.+. |+.-||-.. +-.==-+||.|=+..+.-+..
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred eEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 39999999999998887655 578877765 566665544332 233233111 000003566666666555433
Q ss_pred cCCCChhhhhhhhcccccCCceEEEec
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+...++-+..+.|||||.+.++.
T Consensus 139 ----dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 139 ----DPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred ----CHHHHHHHHHHHcCCCcEEEEec
Confidence 36789999999999999999874
No 417
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=67.92 E-value=2.7 Score=42.56 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=36.5
Q ss_pred CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 459 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 459 prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+-+.|++-+-.+||.+.. -.|...+=.+-|+|+|||.+++||=
T Consensus 142 ~~svD~it~IFvLSAi~p--ek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 142 EGSVDIITLIFVLSAIHP--EKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred cCccceEEEEEEEeccCh--HHHHHHHHHHHHHhCCCcEEEEeec
Confidence 469999999999997643 3588888899999999999999973
No 418
>PLN03075 nicotianamine synthase; Provisional
Probab=64.58 E-value=7.5 Score=40.62 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=73.3
Q ss_pred cceeEeeccCCcchhhhhccC----CCceEEEecccCCCCchh-HHh--hccccc----hhcccccCCCCCCCccchhhc
Q 008748 399 TFRNVMDMNSNLGGFAAALKD----KDVWVMNVAPVRMSARLK-IIY--DRGLIG----TVHDWCESFSTYPRTYDLLHA 467 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~----~~~wvmnv~p~~~~~~l~-~i~--~rgl~g----~~~~~ce~~~typrtydl~h~ 467 (555)
.-+.|+|++||-|++.|.+.- ...-+.|+=.....+.+. -.+ +.||=. ..+|--+..+ -...||+|=+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEE
Confidence 568999999999988554432 223344432221111111 111 234311 1233333211 1257999887
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEEecch---hHHHHHHHHHhhcCccceecccccccccCCCCCceEEEEE
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAK 544 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~---~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~ 544 (555)
. .+- +..+=.-..++-.+=|.|||||++++|--- .++-.+=+...-=.|+.-. .+.++++ --+.++|++
T Consensus 202 ~-ALi--~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~-~~~P~~~----v~Nsvi~~r 273 (296)
T PLN03075 202 A-ALV--GMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLS-VFHPTDE----VINSVIIAR 273 (296)
T ss_pred e-ccc--ccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEE-EECCCCC----ceeeEEEEE
Confidence 7 322 111223578899999999999999999421 1111111111111777743 3444432 246799999
Q ss_pred ecc
Q 008748 545 KKL 547 (555)
Q Consensus 545 k~~ 547 (555)
|.-
T Consensus 274 ~~~ 276 (296)
T PLN03075 274 KPG 276 (296)
T ss_pred eec
Confidence 964
No 419
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=64.12 E-value=17 Score=35.32 Aligned_cols=131 Identities=22% Similarity=0.356 Sum_probs=73.4
Q ss_pred HhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcc--hhhhhccCCCceEEEecccCCC----Cchh-HHhhccc--cch
Q 008748 377 IGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG--GFAAALKDKDVWVMNVAPVRMS----ARLK-IIYDRGL--IGT 447 (555)
Q Consensus 377 ~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g--~faa~l~~~~~wvmnv~p~~~~----~~l~-~i~~rgl--~g~ 447 (555)
.+.|.+++-.=...+. .+..... +++|+|+|-| |..-|+..... +|+=+++. +=|. ++-+=|| +=+
T Consensus 28 ~~~~~~Hi~DSL~~~~-~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~---~~~LvEs~~KK~~FL~~~~~~L~L~nv~v 102 (184)
T PF02527_consen 28 EEIWERHILDSLALLP-FLPDFGK-KVLDIGSGAGFPGIPLAIARPDL---QVTLVESVGKKVAFLKEVVRELGLSNVEV 102 (184)
T ss_dssp HHHHHHHHHHHHGGGG-CS-CCCS-EEEEETSTTTTTHHHHHHH-TTS---EEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred HHHHHHHHHHHHHhhh-hhccCCc-eEEecCCCCCChhHHHHHhCCCC---cEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence 5788877765334332 3333333 6999999855 33333332211 23333332 2333 5666677 457
Q ss_pred hcccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHH---HHHhhcCccc
Q 008748 448 VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIR---KFITALKWDG 521 (555)
Q Consensus 448 ~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~---~~~~~~~w~~ 521 (555)
+|.-.|. ..++..||++=|--+ .++..++--+-+.|+|||.++.--.....++++ ...+.+.++.
T Consensus 103 ~~~R~E~-~~~~~~fd~v~aRAv--------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 103 INGRAEE-PEYRESFDVVTARAV--------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp EES-HHH-TTTTT-EEEEEEESS--------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred EEeeecc-cccCCCccEEEeehh--------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 7777777 678899999864433 346777767788999999999865554444444 4444444443
No 420
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=63.57 E-value=18 Score=37.95 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=59.2
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhh----ccccchhcccccCCCCCC--Cccchhhccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCESFSTYP--RTYDLLHAWKVF 471 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~----rgl~g~~~~~ce~~~typ--rtydl~h~~~~~ 471 (555)
.-+||+|.+||+|=+|-|..+.-. --|+-+|- |-.+.+..| -|+--+-|.=+-..++-| +.||+|=|+=|=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 578999999999987655543100 00222221 122222222 111000011111112222 478888765421
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEecchh-HHHHHHHHHhhcCccc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS-IINYIRKFITALKWDG 521 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~-~~~~~~~~~~~~~w~~ 521 (555)
. .+..+.=++=|.|+|||++|+.--.+ -.+.|.+.+.+=.|++
T Consensus 240 ~-------vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v 283 (300)
T COG2264 240 E-------VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEV 283 (300)
T ss_pred H-------HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeE
Confidence 1 13344456789999999999774211 1566777777778876
No 421
>PHA01634 hypothetical protein
Probab=63.39 E-value=28 Score=32.15 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc---CCCccccCChhhh
Q 008748 155 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDV 188 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dl 188 (555)
..++|+|||++.|..+.+++- +.|.+++.++.-.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~ 64 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR 64 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH
Confidence 346999999999988888764 2678887766543
No 422
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=62.41 E-value=10 Score=37.22 Aligned_cols=99 Identities=9% Similarity=0.037 Sum_probs=63.3
Q ss_pred CCCEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC------CCCCc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY------PSRSF 220 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~------~d~sF 220 (555)
.++.|+++|.-.|..+.+.|. .+|+++|++-..+..+++ +.+.+.|+.++...... ..+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-----e~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-----EVPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-----cCCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 356899999988876666553 267788887666544443 25678888887544321 11223
Q ss_pred cEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 221 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
--|+.....-|..+..-+.|+-..++|..|-++++-+.
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 33433333455555555567778899999999998653
No 423
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=62.21 E-value=21 Score=37.53 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHH
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQ 192 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~ 192 (555)
...++|.=+|.|..+..++++ .++|+|.++..+..+.
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak 61 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAK 61 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 358999999999999988864 5778888776664443
No 424
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=62.08 E-value=26 Score=39.48 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=56.1
Q ss_pred CCCEEEEECCCCcHHHH-HHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-----------CC--------
Q 008748 155 NIRNVLDVGCGVASFGA-YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-----------LP-------- 214 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~-~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-----------Lp-------- 214 (555)
.+.+|+=+|||.-.++. ..+.. .|.++...|.+....+.+++.|.. +...+..+ +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcchhHHHHHH
Confidence 46799999999765444 33432 122333344555566666665543 22222111 10
Q ss_pred --CCC--CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 215 --YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 215 --~~d--~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+.+ +.+|+|+..- ...-...+..+.+++.+.+||||.++...-
T Consensus 240 ~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3599999654 232222343346999999999999987653
No 425
>PLN02476 O-methyltransferase
Probab=60.51 E-value=13 Score=38.42 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=52.0
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-Cchh----HHhhcccc-------chhcccccCC--CCCC
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLK----IIYDRGLI-------GTVHDWCESF--STYP 459 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~----~i~~rgl~-------g~~~~~ce~~--~typ 459 (555)
++..+-++|+++++++|..+.+|..- |-- --|+-++.. ..+. .+-.-|+- |-..+.-..+ ....
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 44556789999999999988877531 100 013333322 1122 23333431 2111211111 1123
Q ss_pred CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 460 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.+||++=.++= + =+...++-..=+.|||||.+|+.
T Consensus 193 ~~FD~VFIDa~-----K--~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 193 SSYDFAFVDAD-----K--RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCEEEECCC-----H--HHHHHHHHHHHHhcCCCcEEEEe
Confidence 57888765441 1 13455555556899999999965
No 426
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=60.34 E-value=19 Score=38.61 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=64.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC-CCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l 230 (555)
..+|||.=+|+|.=+...+.. .++.-|+++..+.....+.....+........|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-----
Confidence 468999999999777666632 4566677777665555444444344555555565443222 267887752
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.=...+..++....+.++.||++.++..
T Consensus 128 DPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 128 DPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 1123456689999999999999999764
No 427
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=60.20 E-value=30 Score=35.47 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=48.2
Q ss_pred CCEEEEECCC-CcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 156 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
..+||-+|+| .|..+..+++. .++.+.....+....+.+.+.+....+...+.....-..+.+|+|+... ..
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~--~~--- 235 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV--VS--- 235 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--Cc---
Confidence 3578888886 55555555553 1222222223334445554444322211111000000124689888432 11
Q ss_pred chHHHHHHHHhhcCCCcEEEEEc
Q 008748 235 RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~ 257 (555)
...+.++.+.|+++|.++...
T Consensus 236 --~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 236 --GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --HHHHHHHHHhcccCCEEEEEC
Confidence 246788899999999999765
No 428
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=60.04 E-value=11 Score=41.70 Aligned_cols=146 Identities=19% Similarity=0.326 Sum_probs=72.5
Q ss_pred CChhhHhHhHhhHHHHHHHHHHhhhhccCCCcc----eeEeeccCCcchhh------hhccCCCceEEEecccCCC----
Q 008748 368 VTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTF----RNVMDMNSNLGGFA------AALKDKDVWVMNVAPVRMS---- 433 (555)
Q Consensus 368 ~~~~~~~~d~~~w~~~v~~y~~~~~~~~~~~~~----rn~~dm~~~~g~fa------a~l~~~~~wvmnv~p~~~~---- 433 (555)
.+-|.|+.|.-+-..--++=...|...+...+. -.|||.|||.|-.. +|-....+ -|..++..
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~---~VyAVEkn~~A~ 227 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAV---KVYAVEKNPNAV 227 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCES---EEEEEESSTHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCe---EEEEEcCCHhHH
Confidence 367899999776554333322333333344443 45999999999873 11112111 23333332
Q ss_pred Cchh-HHhhccc---cchhcccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEE----------
Q 008748 434 ARLK-IIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI---------- 499 (555)
Q Consensus 434 ~~l~-~i~~rgl---~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i---------- 499 (555)
-+|. .|-..|+ |=++|.=-+.+.. |--.|+|=. -++-....+ -.+-.+|.-.||.|+|+|..|
T Consensus 228 ~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVS-ElLGsfg~n-El~pE~Lda~~rfLkp~Gi~IP~~~t~ylaP 304 (448)
T PF05185_consen 228 VTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVS-ELLGSFGDN-ELSPECLDAADRFLKPDGIMIPSSYTSYLAP 304 (448)
T ss_dssp HHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE----BTTBTT-TSHHHHHHHGGGGEEEEEEEESSEEEEEEEE
T ss_pred HHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEE-eccCCcccc-ccCHHHHHHHHhhcCCCCEEeCcchhhEEEE
Confidence 2442 2344444 5555554444444 556666531 111101111 134467888999999999998
Q ss_pred EecchhHHHHHHHHHhhcCcc
Q 008748 500 IRDKSSIINYIRKFITALKWD 520 (555)
Q Consensus 500 ~rd~~~~~~~~~~~~~~~~w~ 520 (555)
|.+ ..+..+++.......++
T Consensus 305 iss-~~l~~~~~~~~~~~~~e 324 (448)
T PF05185_consen 305 ISS-PKLYQEVRNWWNPSSFE 324 (448)
T ss_dssp EE--HHHHHHHHHHHGHHHHT
T ss_pred eeC-HHHHHHHHhhcchhhcC
Confidence 444 45677766554433333
No 429
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=59.85 E-value=25 Score=34.31 Aligned_cols=89 Identities=22% Similarity=0.206 Sum_probs=50.3
Q ss_pred CCEEEEECCCC-cHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-------CCCCCccEEE
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------YPSRSFELAH 224 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-------~~d~sFDlVv 224 (555)
..+||-.|+|. |..+..++.. .+++++.++ ...+.+++.+....+ +..... ...+.+|+|+
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD-----EKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEE
Confidence 46899999985 5555555543 444444433 333444444422111 111111 1235699998
Q ss_pred ecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 225 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 225 ~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.... . ...+..+.+.|+++|.++.....
T Consensus 207 ~~~~-~------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 207 DAVG-G------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred ECCC-C------HHHHHHHHHhcccCCEEEEEccC
Confidence 5431 1 14577788999999999986543
No 430
>PHA03412 putative methyltransferase; Provisional
Probab=59.33 E-value=7.3 Score=39.46 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=50.4
Q ss_pred eEeeccCCcchhhhhccCC----CceEEEecccCCC-CchhHHhhccccchhcccccCCCCC--CCccchhhcccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDK----DVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTY--PRTYDLLHAWKVFSEI 474 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~----~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~ty--prtydl~h~~~~~s~~ 474 (555)
.|+|++||.|.|+.++... + ..+|+-++-. +.+.+.- +.+.. .+=.+.-|-.+ +.+||+|=++==|...
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~--~~~V~aVEID~~Al~~Ar-~n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAK--PREIVCVELNHTYYKLGK-RIVPE-ATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCC--CcEEEEEECCHHHHHHHH-hhccC-CEEEEcchhcccccCCccEEEECCCCCCc
Confidence 7999999999999987542 2 1245444432 3333222 22211 11112222222 3479998877666532
Q ss_pred cc----C---CCChhh-hhhhhcccccCCceEE
Q 008748 475 EE----R---GCSFED-LLIEMDRMLRPEGFVI 499 (555)
Q Consensus 475 ~~----~---~c~~~~-~~~e~drilrp~g~~i 499 (555)
.. . ...+.. ++-..-|+||||++|+
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 21 1 122233 5555567999999855
No 431
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=58.31 E-value=28 Score=38.49 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=55.4
Q ss_pred CCCEEEEECCCCcH--HHHHHhcC----CCccccCChhhhhHHHHHHHH--HcCCCeEEE--EeCCCCCCCCC-CCccEE
Q 008748 155 NIRNVLDVGCGVAS--FGAYLLSH----DIIAMSLAPNDVHENQIQFAL--ERGIPSTLG--VLGTKRLPYPS-RSFELA 223 (555)
Q Consensus 155 ~~~~VLDIGCGtG~--~a~~La~~----~V~~vdis~~dls~a~i~~A~--~rg~~v~~~--~~d~~~Lp~~d-~sFDlV 223 (555)
.+..++|+|.|.|. +++.+.-+ .+..||-+-.+......+.-. +.+. .... +.--..+|... +.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~-~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGE-PIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCc-hhccccchhcccCCCCcccceeeE
Confidence 34578899888663 44444322 455566555544322211111 1111 1111 11124556543 459999
Q ss_pred EecccccccccchHH---HHH-HHHhhcCCCcEEEEEcCCC
Q 008748 224 HCSRCRIDWLQRDGI---LLL-ELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 224 v~s~~~l~~~~d~~~---~L~-el~RvLkPGG~lvis~P~~ 260 (555)
+|++. +++..+... ..+ -..+..++||+++++.+..
T Consensus 279 i~ah~-l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 279 ICAHK-LHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred Eeeee-eeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99994 555544422 333 3455788999999987664
No 432
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=57.96 E-value=15 Score=36.85 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=78.5
Q ss_pred hccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhccc-----cchhcccccCCCCCCCccchh
Q 008748 393 TVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRGL-----IGTVHDWCESFSTYPRTYDLL 465 (555)
Q Consensus 393 ~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rgl-----~g~~~~~ce~~~typrtydl~ 465 (555)
..|.....|+|.|.+||-|---+-|..+ |.=+ +.=++++ .-|--..+|+. .|=.++||-.-+ .|||
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~--i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~-----~dll 96 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTELLARRWPDAV--ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQP-----TDLL 96 (257)
T ss_pred hhCCccccceeeecCCCCCHHHHHHHHhCCCCe--EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCc-----cchh
Confidence 3577789999999999999877777643 3322 3334443 55555566663 578899998755 5999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEe--cchh--HHHHHHHHHhhcCccc
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR--DKSS--IINYIRKFITALKWDG 521 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r--d~~~--~~~~~~~~~~~~~w~~ 521 (555)
-|+-+|--+..+ ..+|--.=--|+|||++-++ |+.+ .-.-+++.++..-|..
T Consensus 97 faNAvlqWlpdH----~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~ 152 (257)
T COG4106 97 FANAVLQWLPDH----PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQ 152 (257)
T ss_pred hhhhhhhhcccc----HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhh
Confidence 999999844333 23333333358999999987 3322 2345677777777765
No 433
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=56.86 E-value=6.4 Score=42.79 Aligned_cols=120 Identities=20% Similarity=0.180 Sum_probs=64.2
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hcccc-c---hh-cccccCCCCC---CCccchhhc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGLI-G---TV-HDWCESFSTY---PRTYDLLHA 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl~-g---~~-~~~ce~~~ty---prtydl~h~ 467 (555)
++|+|+.||.|+|+.+...... -.|+-++.. ..+...- .-|+= . ++ .|.-+.+..+ .++||+|=.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999754322221 134555543 3333211 12331 0 11 1222222222 247898876
Q ss_pred cccc-cccc----cCCCChhhhhhhhcccccCCceEEEe------cchhHHHHHHHHHhhcCccce
Q 008748 468 WKVF-SEIE----ERGCSFEDLLIEMDRMLRPEGFVIIR------DKSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 468 ~~~~-s~~~----~~~c~~~~~~~e~drilrp~g~~i~r------d~~~~~~~~~~~~~~~~w~~~ 522 (555)
+--+ +.-. .....+.+++.-.=++|+|||.++.- +..++.+-|.+-+..-..+++
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~ 365 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 6332 1100 01124566666677999999999973 234566666666666655554
No 434
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=56.64 E-value=54 Score=34.15 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=77.2
Q ss_pred CCEEEEECCCCcHH--HHHHhc--CCCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCC-CC-CCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASF--GAYLLS--HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR-LP-YPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~--a~~La~--~~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~-Lp-~~d~sFDlVv~s~~ 228 (555)
++.|+=+| -.-.. +.+|.. .+|..+|++..-+. -..++|.+.|.+ +...+.|.++ +| .-.+.||+.+.-
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~-fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTD-- 228 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIK-FIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITD-- 228 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHH-HHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecC--
Confidence 45799998 33333 333333 36778888765442 223456666765 7777888643 33 113679988732
Q ss_pred ccccccchHHHHHHHHhhcCCC---cEEEEEcCCCCCCChhhHHHHHHHHH-HHHhcCcEEEEEee
Q 008748 229 RIDWLQRDGILLLELDRLLRPG---GYFVYSSPEAYAHDPENRRIWNAMYD-LLKSMCWKIVSKKD 290 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPG---G~lvis~P~~~~~~~e~~~~~~~l~~-l~~~~gw~vv~~~~ 290 (555)
..+-+.....++..=...||-- |+|-++.. ......|.++++ +..++||.+.....
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r------essidkW~eiQr~lIn~~gvVITdiir 288 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGITRR------ESSIDKWREIQRILINEMGVVITDIIR 288 (354)
T ss_pred chhhHHHHHHHHhccHHHhcCCCccceEeeeec------cccHHHHHHHHHHHHHhcCeeeHhhhh
Confidence 2222333344666656667765 88888643 345678999999 88999997765443
No 435
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=56.61 E-value=7 Score=39.55 Aligned_cols=150 Identities=16% Similarity=0.217 Sum_probs=82.0
Q ss_pred CCccccCCChhhHhHhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCc-eEEEecccC-CCCchhH
Q 008748 361 PRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDV-WVMNVAPVR-MSARLKI 438 (555)
Q Consensus 361 ~~~~~~~~~~~~~~~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~-wvmnv~p~~-~~~~l~~ 438 (555)
|-|..-||.--- ...+.-|......- . .++..+=-+|+|...|+|=+|+.-...-. -|..| + .+|-|.+
T Consensus 102 PTiEIdGIrMhr-t~~tdP~~Dt~~Kv-~----~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv---Ekdp~VLeL 172 (287)
T COG2521 102 PTIEIDGIRMHR-TKGTDPLEDTLAKV-E----LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITV---EKDPNVLEL 172 (287)
T ss_pred CeEEEccEEEec-ccCcCcHHHHHhhh-h----eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEE---eeCCCeEEe
Confidence 445555542110 13455566654322 1 13334456899999999999876554432 33221 1 1222221
Q ss_pred ----Hhhccccc-----hhcccccCCCCCCC-ccch-hhccccccccccCCCChhhhhhhhcccccCCceEEE-------
Q 008748 439 ----IYDRGLIG-----TVHDWCESFSTYPR-TYDL-LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII------- 500 (555)
Q Consensus 439 ----i~~rgl~g-----~~~~~ce~~~typr-tydl-~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~------- 500 (555)
=+.|||.- +..|--|...+++- +||. ||---=||... . ==-+.+--|+-|||||||-+.-
T Consensus 173 a~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~Ag-e-LYseefY~El~RiLkrgGrlFHYvG~Pg~ 250 (287)
T COG2521 173 AKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAG-E-LYSEEFYRELYRILKRGGRLFHYVGNPGK 250 (287)
T ss_pred eccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCCccchhh-h-HhHHHHHHHHHHHcCcCCcEEEEeCCCCc
Confidence 13444422 23455555555555 5885 57555566321 1 0013566799999999998871
Q ss_pred -ecchhHHHHHHHHHhhcCccc
Q 008748 501 -RDKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 501 -rd~~~~~~~~~~~~~~~~w~~ 521 (555)
---.++...|.+-+++.....
T Consensus 251 ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 251 RYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred ccccCChhHHHHHHHHhcCcee
Confidence 123456778888888888874
No 436
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=56.58 E-value=4.9 Score=41.91 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=80.3
Q ss_pred cccchhhh--hcCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHH-HHhc---CCCc
Q 008748 106 KSDQHWMV--VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA-YLLS---HDII 179 (555)
Q Consensus 106 k~~~~W~~--~~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~-~La~---~~V~ 179 (555)
-|+..|+. +.|-++.|...-++|..|-..-...+..+.- .+..|.|+=+|.|+|+. .+.. +.|.
T Consensus 153 ~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc----------~~eviVDLYAGIGYFTlpflV~agAk~V~ 222 (351)
T KOG1227|consen 153 YGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC----------DGEVIVDLYAGIGYFTLPFLVTAGAKTVF 222 (351)
T ss_pred cccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc----------ccchhhhhhcccceEEeehhhccCccEEE
Confidence 36777876 4566777777777887775433333332221 12579999999999998 5544 3688
Q ss_pred cccCChhhhhHHHHHHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcE-EEE
Q 008748 180 AMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGY-FVY 255 (555)
Q Consensus 180 ~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~-lvi 255 (555)
+.+..|-.+ ++..+.+...+.. ..+..+| .+.+-++...|-|.- ..++.-++-..-+-++|||.|- ++-
T Consensus 223 A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd-~R~~~~~~~AdrVnL-----GLlPSse~~W~~A~k~Lk~eggsilH 294 (351)
T KOG1227|consen 223 ACEWNPWSV-EALRRNAEANNVMDRCRITEGD-NRNPKPRLRADRVNL-----GLLPSSEQGWPTAIKALKPEGGSILH 294 (351)
T ss_pred EEecCHHHH-HHHHHHHHhcchHHHHHhhhcc-ccccCccccchheee-----ccccccccchHHHHHHhhhcCCcEEE
Confidence 999998765 4443444433321 1223333 344455677787763 2344445556667788888654 443
No 437
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=56.52 E-value=7.6 Score=40.05 Aligned_cols=69 Identities=17% Similarity=0.429 Sum_probs=49.0
Q ss_pred cccccCCCCCC---CccchhhccccccccccCCCChhhhhhhhcccccCCceEE--------Eecc-------hhH-HHH
Q 008748 449 HDWCESFSTYP---RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI--------IRDK-------SSI-INY 509 (555)
Q Consensus 449 ~~~ce~~~typ---rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i--------~rd~-------~~~-~~~ 509 (555)
.|++|-+.. + .+||-|=.. .|.+.-. +|.+.+-.|-++|+|||++| ..+. ++. +++
T Consensus 151 GDF~e~y~~-~~~~~~~d~VvT~-FFIDTA~---Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eE 225 (270)
T PF07942_consen 151 GDFLEVYGP-DENKGSFDVVVTC-FFIDTAE---NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEE 225 (270)
T ss_pred CccEEecCC-cccCCcccEEEEE-EEeechH---HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHH
Confidence 455555543 3 588876433 4543323 48899999999999999888 3343 333 899
Q ss_pred HHHHHhhcCccce
Q 008748 510 IRKFITALKWDGW 522 (555)
Q Consensus 510 ~~~~~~~~~w~~~ 522 (555)
|+.+++.+.|+..
T Consensus 226 i~~l~~~~GF~~~ 238 (270)
T PF07942_consen 226 IKELIEKLGFEIE 238 (270)
T ss_pred HHHHHHHCCCEEE
Confidence 9999999999973
No 438
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=55.73 E-value=23 Score=26.91 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCcEEEEEeeceEEeecCCCc
Q 008748 271 WNAMYDLLKSMCWKIVSKKDQTVIWAKPISN 301 (555)
Q Consensus 271 ~~~l~~l~~~~gw~vv~~~~~~~iw~KPl~~ 301 (555)
|+++..++++.||..........+|.+|...
T Consensus 1 ~~el~k~L~~~G~~~~r~~GSH~~~~~~~~~ 31 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQKGSHHIFRHPGGR 31 (56)
T ss_dssp -HHHHHHHHHTT-EEEEEETTEEEEE-TTS-
T ss_pred ChHHHHHHHHCCCEEecCCCCEEEEEeCCCC
Confidence 6789999999999999877788889888755
No 439
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=55.56 E-value=33 Score=35.08 Aligned_cols=134 Identities=13% Similarity=0.199 Sum_probs=72.8
Q ss_pred EEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC---CCCCCccEEEeccc---
Q 008748 158 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRC--- 228 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp---~~d~sFDlVv~s~~--- 228 (555)
+++|+=||-|.+..-|.+. -+.++|+++... +.-+.... .....|+..+. ++. .+|+++.+.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-----~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-----ETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-----HHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-----Hhhhhccc--ccccccccccccccccc-cceEEEeccCCce
Confidence 6999999999988888765 355667665433 22222222 66677776664 443 5999987421
Q ss_pred --ccc---cccch-HHH---HHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 229 --RID---WLQRD-GIL---LLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 229 --~l~---~~~d~-~~~---L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
... -..|. ..+ +.++.+.++|.-.++=-++.... ......+..+.+.++++||.+....-...-|.-|.
T Consensus 74 fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~--~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ 151 (335)
T PF00145_consen 74 FSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLS--SKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQ 151 (335)
T ss_dssp TSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGT--GGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSB
T ss_pred EeccccccccccccchhhHHHHHHHhhccceEEEecccceeec--cccccccccccccccccceeehhccccHhhCCCCC
Confidence 000 11122 113 34445566886444422333221 22235688888999999998775554444444444
Q ss_pred Cc
Q 008748 300 SN 301 (555)
Q Consensus 300 ~~ 301 (555)
++
T Consensus 152 ~R 153 (335)
T PF00145_consen 152 NR 153 (335)
T ss_dssp E-
T ss_pred ce
Confidence 43
No 440
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=55.28 E-value=2.4e+02 Score=28.67 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=62.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHHHHHHc----CCCeEEEEeCCCC-CC--CCCCCcc----EE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKR-LP--YPSRSFE----LA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~~A~~r----g~~v~~~~~d~~~-Lp--~~d~sFD----lV 223 (555)
...|+.+|||-=.-...|... .+...+++-.++.+...+...+. ..+..++..|+.. +. +....|| .+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 357999999998777777543 35566665555444443444432 2345666666531 10 1111232 34
Q ss_pred Eecccccccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 224 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 224 v~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
+...+++.|.+.. ..+|..+.+...||+.+++..
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4456678887654 458999998888999999854
No 441
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=54.04 E-value=24 Score=32.05 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=39.0
Q ss_pred CCccEEEecccccccccch----HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 218 RSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~----~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..||+|+--. +.-..++ ..++..+.|+++|||.+.-.+-. ..+..-+.+.||.+.+..+
T Consensus 49 ~~~Da~ylDg--FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a------------~~Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 49 ARFDAWYLDG--FSPAKNPELWSEELFKKLARLSKPGGTLATYSSA------------GAVRRALQQAGFEVEKVPG 111 (124)
T ss_dssp T-EEEEEE-S--S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B------------HHHHHHHHHCTEEEEEEE-
T ss_pred ccCCEEEecC--CCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech------------HHHHHHHHHcCCEEEEcCC
Confidence 5688888432 2222233 56999999999999998863221 2577889999999876554
No 442
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=53.99 E-value=14 Score=34.79 Aligned_cols=95 Identities=11% Similarity=0.168 Sum_probs=51.0
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc----ccchhcccccCCCCCCC-ccchhhccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG----LIGTVHDWCESFSTYPR-TYDLLHAWKVFSE 473 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg----l~g~~~~~ce~~~typr-tydl~h~~~~~s~ 473 (555)
-.+|+|++||.|.++..|.+.. -.|+-++-. ..+...-++- =+-+++.=.+.+. ++. .||.+=++--|.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~- 88 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN- 88 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcc-
Confidence 3479999999999999998762 345555543 3333333321 0112222122222 222 467664443333
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+.. .+..-+++... +.++|.++++..
T Consensus 89 ~~~---~~i~~~l~~~~-~~~~~~l~~q~e 114 (169)
T smart00650 89 IST---PILFKLLEEPP-AFRDAVLMVQKE 114 (169)
T ss_pred cHH---HHHHHHHhcCC-CcceEEEEEEHH
Confidence 111 23444555433 669999999863
No 443
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=53.88 E-value=7.3 Score=38.78 Aligned_cols=39 Identities=31% Similarity=0.380 Sum_probs=28.1
Q ss_pred ccchhhccccc-cccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 461 TYDLLHAWKVF-SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 461 tydl~h~~~~~-s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
+||-|-..-++ |. -+-+-+|=|+-|+|||||.+|+=+.+
T Consensus 145 s~DtVV~TlvLCSv-----e~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 145 SYDTVVCTLVLCSV-----EDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred CeeeEEEEEEEecc-----CCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 78877654433 31 23567899999999999999976543
No 444
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=53.76 E-value=12 Score=40.42 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=57.3
Q ss_pred CEEEEECCCCcHHHHHHh-c----CCCccccCChhhhhHHHHHHHHHcCCC---eEEEEeCCCCCC-CCCCCccEEEecc
Q 008748 157 RNVLDVGCGVASFGAYLL-S----HDIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLP-YPSRSFELAHCSR 227 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La-~----~~V~~vdis~~dls~a~i~~A~~rg~~---v~~~~~d~~~Lp-~~d~sFDlVv~s~ 227 (555)
-+|||.=+|+|.=+...+ + ..|+.-|+++..+.....+ +.-++.. +.+...|+..+- .....||+|=.-
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N-~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRN-LELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHH-HHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHh-HhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 489999999995554443 3 2566677777665443333 2233333 466666755442 245779998731
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
. ...+..+|..+.+.++.||++.++..+
T Consensus 129 ---P-fGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 ---P-FGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred ---C-CCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 1 234566899999999999999997643
No 445
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=52.60 E-value=17 Score=36.53 Aligned_cols=117 Identities=20% Similarity=0.323 Sum_probs=72.3
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-----CchhHHhhccc--cchh-cccccCCCCCCC--ccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKIIYDRGL--IGTV-HDWCESFSTYPR--TYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-----~~l~~i~~rgl--~g~~-~~~ce~~~typr--tydl~h~~~ 469 (555)
..++++++|.|.|-++|... |-+ |++=++-. .-|.-|-+.|| |-++ ||=-+-+..++. +.|-|+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~--nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i-- 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK--NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI-- 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC--CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--
Confidence 46999999999999999643 332 44444322 33445777787 4444 232233333332 6666552
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCceEEEe-cchhHHHH-HHHHHhh---cCccc
Q 008748 470 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINY-IRKFITA---LKWDG 521 (555)
Q Consensus 470 ~~s~~------~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~-~~~~~~~---~~w~~ 521 (555)
.|++- .++|=-=...|-++-|+|+|||.+-+. |..+..+. +...+.. +.+..
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~ 188 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFES 188 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccc
Confidence 24432 134555568888999999999999986 66666666 5555554 55544
No 446
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.29 E-value=46 Score=35.38 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=57.1
Q ss_pred CCCEEEEECCCCc-HHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC---------CCCCCccEEE
Q 008748 155 NIRNVLDVGCGVA-SFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------YPSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG-~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp---------~~d~sFDlVv 224 (555)
.+.+||=+|+|.= .++...++. +-+.++.-.|+.+.+++.|++-|..+........... +....||+.+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka-~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKA-MGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHH-cCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 3468999999964 444444442 2233444445566677888886655444333222111 2234588877
Q ss_pred ecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 225 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 225 ~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
-.. .+ +..++-....||+||.++++.-.
T Consensus 248 dCs-G~------~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 248 DCS-GA------EVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred Ecc-Cc------hHHHHHHHHHhccCCEEEEeccC
Confidence 332 12 34677788899999998887643
No 447
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=51.60 E-value=52 Score=34.23 Aligned_cols=86 Identities=20% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCEEEEECCC-CcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+||=.|+| .|.++..+++. .+++++ .++...+.+++.|....+ +.... ..+.+|+++-... .
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~-----~~~~~~~~a~~~Ga~~vi---~~~~~--~~~~~d~~i~~~~-~- 233 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMT-----RGAAARRLALALGAASAG---GAYDT--PPEPLDAAILFAP-A- 233 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEe-----CChHHHHHHHHhCCceec---ccccc--CcccceEEEECCC-c-
Confidence 4689988875 33444445543 233333 334455777777654322 11111 1235887653221 1
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
...+....+.|++||.+++...
T Consensus 234 -----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----HHHHHHHHHhhCCCcEEEEEec
Confidence 2368889999999999988653
No 448
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=50.85 E-value=24 Score=39.66 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=54.0
Q ss_pred CCCEEEEECCCCcHH-HHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC------------------
Q 008748 155 NIRNVLDVGCGVASF-GAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR------------------ 212 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~-a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~------------------ 212 (555)
.+.+||=+|+|.-.. +..++.. .|+++|..+ ...+.+++.+. .++..+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~-----~rle~a~~lGa--~~v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP-----EVKEQVQSMGA--EFLELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHcCC--eEEeccccccccccccceeecCHHHHH
Confidence 357999999997643 3334432 455555544 33445554432 232222110
Q ss_pred -----CCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 213 -----LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 213 -----Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
++-.-..+|+|++.- .+.-.+.+..+.+++.+.+|||+.++-
T Consensus 236 ~~~~~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111124599998654 455545555578999999999999883
No 449
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=50.73 E-value=15 Score=36.74 Aligned_cols=144 Identities=14% Similarity=0.197 Sum_probs=81.2
Q ss_pred HHHHhhhhccCCCcceeEeeccCCcchhhhhccC-CCceEEEecccCC-C----CchhHHhhccccc---hh--cccccC
Q 008748 386 DYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-S----ARLKIIYDRGLIG---TV--HDWCES 454 (555)
Q Consensus 386 ~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~-~----~~l~~i~~rgl~g---~~--~~~ce~ 454 (555)
.|...| +....-++|+.++.+.|==|..|.. .|- ---++-++- + ..-..+-+-|+-. ++ .|+=|-
T Consensus 49 ~~L~~L---~~~~~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 49 ALLRLL---ARLSGPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHH---HHhcCCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 455554 5566899999999887744433321 010 001222221 1 1222344444322 22 488888
Q ss_pred CC-CCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe--------------cchhHHHHHHHHHhhcCc
Q 008748 455 FS-TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR--------------DKSSIINYIRKFITALKW 519 (555)
Q Consensus 455 ~~-typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r--------------d~~~~~~~~~~~~~~~~w 519 (555)
++ ...=+||||=.+. .+-.....+=+.=+.|||||.+|+. +....+.+|+....-+.+
T Consensus 125 l~~~~~~~fDliFIDa-------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~ 197 (219)
T COG4122 125 LSRLLDGSFDLVFIDA-------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLE 197 (219)
T ss_pred HHhccCCCccEEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhh
Confidence 88 4677999986443 2234556666666779999999954 333556667777777766
Q ss_pred cceecccccccccCCCCCceEEEEEec
Q 008748 520 DGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
+-+..+ .-=| -.+.++++.|.
T Consensus 198 ~~~~~t---~~lP---~gDGl~v~~k~ 218 (219)
T COG4122 198 DPRYDT---VLLP---LGDGLLLSRKR 218 (219)
T ss_pred CcCcee---EEEe---cCCceEEEeec
Confidence 642111 1112 23789999885
No 450
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=50.42 E-value=50 Score=34.00 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=48.0
Q ss_pred CCEEEEECCCC-cHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeC---CCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG---TKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d---~~~Lp~~d~sFDlVv~s~ 227 (555)
..+||-.|||. |..+..+++. .+++++- ++.+...+.+.+... +.... ...+....+.+|+|+...
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~-----s~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDL-----ADAPLAVARAMGADE-TVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC-----CHHHHHHHHHcCCCE-EEcCCchhhhhhhccCCCccEEEECC
Confidence 46788888764 5555556653 2333332 333334444444321 11111 111221224599998432
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
. . ...+.++.+.|+++|.++...
T Consensus 240 g-~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 G-A------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C-C------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 1 246888999999999999764
No 451
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=50.39 E-value=64 Score=33.00 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=48.1
Q ss_pred CCEEEEECCC-CcHHHHHHhcC---C-CccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC----CCCCCCccEEEec
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~---~-V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L----p~~d~sFDlVv~s 226 (555)
..+||-+|+| .|..+..+++. . +..++-+ ......+.+.+.. .+...+.... ....+.+|+|+..
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPN-----EEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 3588988864 24455555543 2 3333332 3333444444533 1211111110 1133569999853
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.. ....+.++.+.|+++|.++....
T Consensus 234 ~~-------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 234 TG-------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CC-------ChHHHHHHHHHHhcCCEEEEEec
Confidence 21 13468888999999999987653
No 452
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=50.35 E-value=30 Score=36.99 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=45.5
Q ss_pred CCCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhH---HHHHH---HHHcC---CCeEEEEeCCCCCCCC-CCCccE
Q 008748 155 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHE---NQIQF---ALERG---IPSTLGVLGTKRLPYP-SRSFEL 222 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~---a~i~~---A~~rg---~~v~~~~~d~~~Lp~~-d~sFDl 222 (555)
++..|+|==.|||++....+. +-|.|.||+..++.. ....+ -++-+ ..+.+..+|...-|+- ...||.
T Consensus 208 pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDa 287 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDA 287 (421)
T ss_pred CCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeE
Confidence 346899999999987665553 578899998877651 11111 11112 1245667777766653 357999
Q ss_pred EEe
Q 008748 223 AHC 225 (555)
Q Consensus 223 Vv~ 225 (555)
|+|
T Consensus 288 Ivc 290 (421)
T KOG2671|consen 288 IVC 290 (421)
T ss_pred EEe
Confidence 999
No 453
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.28 E-value=44 Score=35.00 Aligned_cols=133 Identities=14% Similarity=0.211 Sum_probs=66.8
Q ss_pred EEEECCCCcHHHHHHhcCC---CccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC-CCCccEEEeccccccc--
Q 008748 159 VLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDW-- 232 (555)
Q Consensus 159 VLDIGCGtG~~a~~La~~~---V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~~-- 232 (555)
|+|+-||.|.++.-|.+.. +.++|+.... .+.-+..... .+...|+..+... -..+|+++.+.---.|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a-----~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ 74 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYA-----QKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSI 74 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHH-----HHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccch
Confidence 5899999998888877652 3345554433 2332222222 3445666555421 1248998864210001
Q ss_pred ------ccch-HHHHHHHHhhc---CCCcEEEEE-cCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeeceEEeecCCC
Q 008748 233 ------LQRD-GILLLELDRLL---RPGGYFVYS-SPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 300 (555)
Q Consensus 233 ------~~d~-~~~L~el~RvL---kPGG~lvis-~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl~ 300 (555)
..+. ..++.++.|++ +|. ++++- ++...... ....+..+...++.+||.+....-...-|.-|.+
T Consensus 75 ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~--~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~ 150 (315)
T TIGR00675 75 AGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHD--KGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQN 150 (315)
T ss_pred hcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcc--cchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCC
Confidence 1222 23555555554 775 33331 12211111 1245677888889999987654433333333433
No 454
>PTZ00357 methyltransferase; Provisional
Probab=50.02 E-value=42 Score=39.08 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=60.9
Q ss_pred CEEEEECCCCcHHHHHHhcC--------CCccccCChhhhhHHHHHHHHH-c--------CCCeEEEEeCCCCCCCC---
Q 008748 157 RNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALE-R--------GIPSTLGVLGTKRLPYP--- 216 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--------~V~~vdis~~dls~a~i~~A~~-r--------g~~v~~~~~d~~~Lp~~--- 216 (555)
..|+=+|+|-|-+....++. +|.+++-++........+.... . +..+.++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999765554431 4666666643222222221111 1 23478888898776432
Q ss_pred --------CCCccEEEecccccccccch--HHHHHHHHhhcCC----CcEE----EEEcCCCC
Q 008748 217 --------SRSFELAHCSRCRIDWLQRD--GILLLELDRLLRP----GGYF----VYSSPEAY 261 (555)
Q Consensus 217 --------d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkP----GG~l----vis~P~~~ 261 (555)
-+.+|+||+ ..+=.|.++. .+.|..+.+.||+ +|++ .|++|..|
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSY 843 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQY 843 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhccccccccCCcceecchhh
Confidence 136999995 3233344443 3588888999987 7863 24556543
No 455
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=49.99 E-value=10 Score=33.29 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=49.6
Q ss_pred CCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-----C-CCCCCccEEEecccccccccc
Q 008748 165 GVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCSRCRIDWLQR 235 (555)
Q Consensus 165 GtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-----p-~~d~sFDlVv~s~~~l~~~~d 235 (555)
|.|.++..++.. +|++++ .++...+.+++.|....+. .+..++ . ...+.+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~-----~~~~k~~~~~~~Ga~~~~~-~~~~~~~~~i~~~~~~~~~d~vid~~g------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATD-----RSEEKLELAKELGADHVID-YSDDDFVEQIRELTGGRGVDVVIDCVG------- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE-----SSHHHHHHHHHTTESEEEE-TTTSSHHHHHHHHTTTSSEEEEEESSS-------
T ss_pred ChHHHHHHHHHHcCCEEEEEE-----CCHHHHHHHHhhccccccc-ccccccccccccccccccceEEEEecC-------
Confidence 457777777753 444444 4555667777776332221 111111 1 23357999883321
Q ss_pred hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 236 DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 236 ~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
-...+.+...+|++||.+++..-.
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 145899999999999999997644
No 456
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=49.80 E-value=57 Score=31.88 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCChhhHhHh--HhhHHHHHHH-HHHhhhhccCCCcceeEeeccCCcchhhhhcc--CCCceEEEecccCCCCchhHHhh
Q 008748 367 GVTTEEFHED--IGIWQVRVVD-YWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK--DKDVWVMNVAPVRMSARLKIIYD 441 (555)
Q Consensus 367 ~~~~~~~~~d--~~~w~~~v~~-y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~--~~~~wvmnv~p~~~~~~l~~i~~ 441 (555)
|+..+.|..| ...=|+-|.. -...|. +..+. -++|++||.|+-+--+. ... .-|+-++...
T Consensus 3 gipD~~F~~~~~~p~TK~EIRal~ls~L~--~~~g~--~l~DIGaGtGsi~iE~a~~~p~---~~v~AIe~~~------- 68 (187)
T COG2242 3 GIPDELFERDEGGPMTKEEIRALTLSKLR--PRPGD--RLWDIGAGTGSITIEWALAGPS---GRVIAIERDE------- 68 (187)
T ss_pred CCCchhhccCCCCCCcHHHHHHHHHHhhC--CCCCC--EEEEeCCCccHHHHHHHHhCCC---ceEEEEecCH-------
Confidence 4556667666 2223444443 234453 55666 69999999999763332 211 2333344321
Q ss_pred ccccchhcccccCCCCCCC-------cc----chhhccccccccccCCCChhhhhhhhcccccCCceEEEe-cchhHHHH
Q 008748 442 RGLIGTVHDWCESFSTYPR-------TY----DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINY 509 (555)
Q Consensus 442 rgl~g~~~~~ce~~~typr-------ty----dl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~ 509 (555)
.-+.+...=|++|. +++ .+ |+-+.+.+|--- .=+++.||--....|||||.+|.- =+.+.+.+
T Consensus 69 -~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~~~daiFIGG---g~~i~~ile~~~~~l~~ggrlV~naitlE~~~~ 143 (187)
T COG2242 69 -EALELIERNAARFG-VDNLEVVEGDAPEALPDLPSPDAIFIGG---GGNIEEILEAAWERLKPGGRLVANAITLETLAK 143 (187)
T ss_pred -HHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCCCCCEEEECC---CCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHH
Confidence 11222333455555 443 11 222344556511 246889999999999999999975 56677777
Q ss_pred HHHHHhhcCc-cc
Q 008748 510 IRKFITALKW-DG 521 (555)
Q Consensus 510 ~~~~~~~~~w-~~ 521 (555)
+-+..+.+.+ ++
T Consensus 144 a~~~~~~~g~~ei 156 (187)
T COG2242 144 ALEALEQLGGREI 156 (187)
T ss_pred HHHHHHHcCCceE
Confidence 7777788888 55
No 457
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=49.28 E-value=10 Score=37.80 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=54.6
Q ss_pred CcceeEeeccCCcchhhhhccCCCc-eEEEecccCCC-CchhHHh--hccccchhc-ccccCCCCCCCccchhhcccccc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDKDV-WVMNVAPVRMS-ARLKIIY--DRGLIGTVH-DWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~~~-wvmnv~p~~~~-~~l~~i~--~rgl~g~~~-~~ce~~~typrtydl~h~~~~~s 472 (555)
......+|.+||.|-..-.|+-+-. .|==|=|+..- ++..--. +.+-+|.+. -==|.|..=+.+||+|=.-=+..
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 4688999999999999887754311 22222233221 2222111 222233222 11223332256999997655555
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecchhH
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSI 506 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~ 506 (555)
+++. -++...|--.=.-|+|+|.+||.|++..
T Consensus 134 hLTD--~dlv~fL~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 134 HLTD--EDLVAFLKRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp GS-H--HHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred cCCH--HHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence 4442 2466677777778999999999977543
No 458
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=48.94 E-value=54 Score=36.02 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=60.4
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc---hhcccccCCCC--C-CCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG---TVHDWCESFST--Y-PRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g---~~~~~ce~~~t--y-prtydl~h~~~ 469 (555)
..|+|++||.|.|+.+|...- ..|+-++.. ..+...-+ .|+-. +-.|+-+.+.. + +.+||+|-.+-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 479999999999999997653 345556543 34433221 23211 11233222222 2 24688774322
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccc
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~ 521 (555)
.+..+..++-.+-+ |.|++.+++.=++.++.+=-..+..-.|++
T Consensus 376 -------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l 419 (443)
T PRK13168 376 -------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEAGYRL 419 (443)
T ss_pred -------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhCCcEE
Confidence 23334555544444 589999999966666554333333334665
No 459
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=48.89 E-value=21 Score=39.80 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=56.2
Q ss_pred eEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhH---Hhhc-cccc--hh-cccccCCCCCCCccchhh----
Q 008748 402 NVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKI---IYDR-GLIG--TV-HDWCESFSTYPRTYDLLH---- 466 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~---i~~r-gl~g--~~-~~~ce~~~typrtydl~h---- 466 (555)
.|+||.|+-||=..+|.. ..- .|+-.+-. +-+.+ -.+| |+-- +. .|=...-..+|.+||.|-
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g---~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQG---AIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 699999999997665532 111 24444432 33443 3444 4321 11 121111124466789887
Q ss_pred c--ccccccccc--CCCCh----------hhhhhhhcccccCCceEEEe-------cchhHHHHH
Q 008748 467 A--WKVFSEIEE--RGCSF----------EDLLIEMDRMLRPEGFVIIR-------DKSSIINYI 510 (555)
Q Consensus 467 ~--~~~~s~~~~--~~c~~----------~~~~~e~drilrp~g~~i~r-------d~~~~~~~~ 510 (555)
+ .|+|...-. .+-+. ..||-..=+.|||||.+|.. ++.+++..+
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~ 257 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWL 257 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 2 244442100 00011 26777778999999999976 555555443
No 460
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=48.48 E-value=50 Score=34.56 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=50.4
Q ss_pred CCEEEEECCCC-cHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC--CCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L--p~~d~sFDlVv~s~~~ 229 (555)
..+||=+|+|. |.++..+++. .+++++.+ +.++...+++++.|.. .+......+ ....+.||+|+-...
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~--~~~~~~~~~~~~~Ga~--~v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR--DPPDPKADIVEELGAT--YVNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCE--EecCCccchhhhhhcCCCCEEEECcC-
Confidence 35788888763 4555555543 34444332 1234555667666543 211111110 001246898884331
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
. ...+.+..++|++||.+++..
T Consensus 248 -----~-~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 -----V-PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred -----C-HHHHHHHHHHccCCcEEEEEe
Confidence 1 236888999999999998765
No 461
>PHA03411 putative methyltransferase; Provisional
Probab=48.03 E-value=16 Score=37.84 Aligned_cols=97 Identities=11% Similarity=0.194 Sum_probs=55.9
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhccccchhcccccCCCCC--CCccchhhccccccccc-
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTY--PRTYDLLHAWKVFSEIE- 475 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~ty--prtydl~h~~~~~s~~~- 475 (555)
..|+|++||.|.|+.++... +. .+|+=++.. ..+...-++ +-. ..=.+..+..+ +++||+|=++-=|-...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 46999999999998777542 11 245555543 444433222 111 11012222333 35899988876665311
Q ss_pred ---cC-----------CC-ChhhhhhhhcccccCCceEEEe
Q 008748 476 ---ER-----------GC-SFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 476 ---~~-----------~c-~~~~~~~e~drilrp~g~~i~r 501 (555)
.. .| .+...+-..-++|.|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 00 11 2567888889999999988765
No 462
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=47.06 E-value=27 Score=36.85 Aligned_cols=93 Identities=14% Similarity=0.233 Sum_probs=51.2
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccc-c------chhccc-ccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGL-I------GTVHDW-CESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl-~------g~~~~~-ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++..|.... -+|+-+|-. +-|.+.-+|.- . +.--+| +..+...+.+||+|=+.+++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 479999999999999998653 356667654 56655444421 0 111112 11122336789988766665
Q ss_pred cccccCCCChhhhhhhhcccccCCceEE
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVI 499 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i 499 (555)
.++... .+..++-.+-++ .++|.+|
T Consensus 223 ~H~p~~--~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 223 IHYPQD--KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EecCHH--HHHHHHHHHHhh-cCCEEEE
Confidence 432221 123344455543 4555544
No 463
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=46.90 E-value=70 Score=32.86 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=49.9
Q ss_pred CCEEEEECC--CCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-----CCCCCCccEEEeccc
Q 008748 156 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGC--GtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-----p~~d~sFDlVv~s~~ 228 (555)
..+||=.|+ |.|.++..+++.. +..+.....+....+++++.|....+...+...+ ....+.+|+|+-...
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 457888884 4667777777641 2222222223444566666554322211111111 011246898884321
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
...+....++|++||.++...
T Consensus 217 --------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 217 --------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred --------HHHHHHHHHHhCcCcEEEEec
Confidence 235688899999999999754
No 464
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=45.24 E-value=17 Score=39.65 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=61.6
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhcccc---chhcccccCCCCCC---Cccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLI---GTVHDWCESFSTYP---RTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl~---g~~~~~ce~~~typ---rtydl~h~~~ 469 (555)
..|+|+.||+|.|+..|.+.-- .|+-++.. .-+... -..|+- =+.-|..+.++.++ .+||+|=.+-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 4699999999999999875421 34444432 222211 112321 12223333223222 3567664222
Q ss_pred cccccccCCCC-hhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccc
Q 008748 470 VFSEIEERGCS-FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 470 ~~s~~~~~~c~-~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~ 521 (555)
.|-. ...++-++.+ |+|+|.+++.-++.++.+--+.+..-.|++
T Consensus 371 -------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 371 -------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGI 415 (431)
T ss_pred -------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeE
Confidence 1223 2344444444 889999999988888877666666666765
No 465
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=45.17 E-value=8.4 Score=38.01 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=69.6
Q ss_pred ccCCCcceeEeeccCCcchhhhhcc-----CCCceEEEecccCCCCchhHHhhccccc---h-hcccccCCCCC-----C
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALK-----DKDVWVMNVAPVRMSARLKIIYDRGLIG---T-VHDWCESFSTY-----P 459 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~-----~~~~wvmnv~p~~~~~~l~~i~~rgl~g---~-~~~~ce~~~ty-----p 459 (555)
.+...+-++|+.++++.|==|.+|. +-.|+.+-.-|....-.-..+-.-|+-. + ..|..|.+++. +
T Consensus 40 l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 40 LVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp HHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTT
T ss_pred HHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCC
Confidence 3455678999999999886555443 2244554443322211122334445421 1 12344433332 3
Q ss_pred CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecch----------------hHHHHHHHHHhhcCcccee
Q 008748 460 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDGWL 523 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~----------------~~~~~~~~~~~~~~w~~~~ 523 (555)
.+||+|=-++==+ .....+-..=+.|||||.+|+.+.. .+-+-.+.|.+-=+.++.
T Consensus 120 ~~fD~VFiDa~K~-------~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~- 191 (205)
T PF01596_consen 120 GQFDFVFIDADKR-------NYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETV- 191 (205)
T ss_dssp TSEEEEEEESTGG-------GHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEE-
T ss_pred CceeEEEEccccc-------chhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEE-
Confidence 5899986555211 2333333444899999999987432 122233334444455542
Q ss_pred cccccccccCCCCCceEEEEEec
Q 008748 524 SEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 524 ~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
.+ | -.+.|++++|+
T Consensus 192 -ll-----p---igdGl~l~~K~ 205 (205)
T PF01596_consen 192 -LL-----P---IGDGLTLARKR 205 (205)
T ss_dssp -EE-----C---STTEEEEEEE-
T ss_pred -EE-----E---eCCeeEEEEEC
Confidence 22 1 24789999985
No 466
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=44.79 E-value=92 Score=31.78 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=43.0
Q ss_pred CeEEEEeCC-CCCC-CCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHH
Q 008748 202 PSTLGVLGT-KRLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 279 (555)
Q Consensus 202 ~v~~~~~d~-~~Lp-~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~ 279 (555)
++.++.+.+ +.+| .+...+-+++.- ..+-+.....|..++..|.|||+++|-+-. . +. .-+.+.+..+
T Consensus 158 ~v~~vkG~F~dTLp~~p~~~IAll~lD---~DlYesT~~aLe~lyprl~~GGiIi~DDY~---~-~g---cr~AvdeF~~ 227 (248)
T PF05711_consen 158 NVRFVKGWFPDTLPDAPIERIALLHLD---CDLYESTKDALEFLYPRLSPGGIIIFDDYG---H-PG---CRKAVDEFRA 227 (248)
T ss_dssp TEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESSTT---T-HH---HHHHHHHHHH
T ss_pred cEEEECCcchhhhccCCCccEEEEEEe---ccchHHHHHHHHHHHhhcCCCeEEEEeCCC---C-hH---HHHHHHHHHH
Confidence 577877774 3344 233344444321 122233456899999999999999995422 2 22 2334555666
Q ss_pred hcCcE--EEEEeeceEEeec
Q 008748 280 SMCWK--IVSKKDQTVIWAK 297 (555)
Q Consensus 280 ~~gw~--vv~~~~~~~iw~K 297 (555)
+.|.. +.......+.|+|
T Consensus 228 ~~gi~~~l~~id~~~v~w~k 247 (248)
T PF05711_consen 228 EHGITDPLHPIDWTGVYWRK 247 (248)
T ss_dssp HTT--S--EE-SSS-EEEE-
T ss_pred HcCCCCccEEecCceEEEec
Confidence 66653 3333333456776
No 467
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=44.75 E-value=46 Score=35.09 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=38.8
Q ss_pred CeEEEEeCCCCCCCCC-------CCccEEEeccccccc----ccchHHHHHHHHhhcCCCcEEEEEc-CCCCCCC
Q 008748 202 PSTLGVLGTKRLPYPS-------RSFELAHCSRCRIDW----LQRDGILLLELDRLLRPGGYFVYSS-PEAYAHD 264 (555)
Q Consensus 202 ~v~~~~~d~~~Lp~~d-------~sFDlVv~s~~~l~~----~~d~~~~L~el~RvLkPGG~lvis~-P~~~~~~ 264 (555)
.+.|.+.|+..+..++ .+.|+|...|..-+. ....-++|..+...++||-+|+|++ |+.|.+.
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSYS~~ 250 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSYSEI 250 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCchhe
Confidence 4567777766554321 245666644321111 1223558999999999999999876 6666543
No 468
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=42.17 E-value=29 Score=37.55 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC---CCccccCCh
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAP 185 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~ 185 (555)
.+...|.|+|+|.|+++..|.=. .|.++|-+.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 34568999999999999998742 566776663
No 469
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=42.12 E-value=82 Score=33.10 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=49.8
Q ss_pred CCEEEEECC--CCcHHHHHHhcCCCccccCChhhhhHHHHHHHH-HcCCCeEEEEeCCCCC-----CCCCCCccEEEecc
Q 008748 156 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRL-----PYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGC--GtG~~a~~La~~~V~~vdis~~dls~a~i~~A~-~rg~~v~~~~~d~~~L-----p~~d~sFDlVv~s~ 227 (555)
..+||=.|+ |.|.++..+++.. +..+...+.+....+.++ +.|....+...+...+ ....+.+|+|+-..
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 468888887 4677777777641 222222222333445544 3454322211100011 01124689888432
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
. ...+....+.|++||.+++..
T Consensus 237 G--------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 237 G--------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred C--------HHHHHHHHHHhccCCEEEEEC
Confidence 1 236788899999999999765
No 470
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=41.88 E-value=16 Score=38.75 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=37.6
Q ss_pred CCccchhhcccccc----ccccCCCChhhhhhhhcccccCCceEE--EecchhHHHHHHHHHhhcCccc
Q 008748 459 PRTYDLLHAWKVFS----EIEERGCSFEDLLIEMDRMLRPEGFVI--IRDKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 459 prtydl~h~~~~~s----~~~~~~c~~~~~~~e~drilrp~g~~i--~rd~~~~~~~~~~~~~~~~w~~ 521 (555)
|| +|++-+-..|- ...+ ....|.-+=+-|||||++| +=|.-.++.+++.. ...+|--
T Consensus 195 p~-fDivScQF~~HYaFetee~----ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gN 257 (389)
T KOG1975|consen 195 PR-FDIVSCQFAFHYAFETEES----ARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGN 257 (389)
T ss_pred CC-cceeeeeeeEeeeeccHHH----HHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhcc
Confidence 44 88877655542 1222 2345556778999999999 56888888888876 4445543
No 471
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=41.86 E-value=25 Score=36.51 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=64.0
Q ss_pred hccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCCCchhHHhhccccchhccccc-------------CCCCCC
Q 008748 393 TVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCE-------------SFSTYP 459 (555)
Q Consensus 393 ~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce-------------~~~typ 459 (555)
+.+..++-|.|+=++.|-||.+-.+.+.+- |=.++=++- |-=-|-+-|..++..|.++. -.-.++
T Consensus 70 ~~~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEI-D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 70 PLLAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEI-DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEc-CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 345667779999999999999999887652 111211111 22235667777777775544 122355
Q ss_pred Cccchhh---------ccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 460 RTYDLLH---------AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 460 rtydl~h---------~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.+||+|= |-+|||. ...=...|+|+|+|.++.+
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~---------eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTE---------EFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCH---------HHHHHHHHhcCCCcEEEEe
Confidence 6899885 3444552 3344568999999999998
No 472
>PRK10458 DNA cytosine methylase; Provisional
Probab=41.38 E-value=3.1e+02 Score=30.62 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcCC---CccccCCh
Q 008748 132 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHD---IIAMSLAP 185 (555)
Q Consensus 132 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~---V~~vdis~ 185 (555)
.......+.++++..... .....-+++|+=||.|.+..-+-... |.++|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~--~~~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~ 120 (467)
T PRK10458 66 SEAEFAHLQTLLPKPPAH--HPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK 120 (467)
T ss_pred cHHHHHHHHHhcccCccc--CcCCCceEEEeCcCccHHHHHHHHcCCEEEEEEechH
Confidence 333445666666543221 11224589999999999888876542 33445543
No 473
>PF14881 Tubulin_3: Tubulin domain
Probab=41.03 E-value=60 Score=31.39 Aligned_cols=63 Identities=22% Similarity=0.452 Sum_probs=38.2
Q ss_pred cCCChhhHhH---hHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhcc--------CCCc-eEEEecccC
Q 008748 366 VGVTTEEFHE---DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK--------DKDV-WVMNVAPVR 431 (555)
Q Consensus 366 ~~~~~~~~~~---d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~--------~~~~-wvmnv~p~~ 431 (555)
.++..+.|++ ......+.+..|..-=- .-..+.-+.|+..|+||||+.++ ++++ |+.++-+..
T Consensus 43 f~~G~~~f~~~~~~~d~~D~~lR~f~EECD---~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~ 117 (180)
T PF14881_consen 43 FGVGQELFKSLDYEEDFFDRDLRFFLEECD---SLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPS 117 (180)
T ss_pred ccchHHHHhhhhhhhHHHHHHHHHHHHHcc---cccceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcc
Confidence 3455566653 22344444555543111 11357789999999999999996 4464 887765443
No 474
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=40.81 E-value=42 Score=33.96 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=37.3
Q ss_pred CEEEEECCCCcHHHHHHh--cCCCccccCChhhhh--HHHHHHHHHcC-C------CeEEEEeCCCC-CCCCCCCccEEE
Q 008748 157 RNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVH--ENQIQFALERG-I------PSTLGVLGTKR-LPYPSRSFELAH 224 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La--~~~V~~vdis~~dls--~a~i~~A~~rg-~------~v~~~~~d~~~-Lp~~d~sFDlVv 224 (555)
.+|||.=+|-|.=+..++ ..+|++++-++.... ...++.+.+.. . ++++..+|... |..++++||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 489999999997666555 457999988886321 12222232221 1 46778888544 556678999999
Q ss_pred ecc
Q 008748 225 CSR 227 (555)
Q Consensus 225 ~s~ 227 (555)
.--
T Consensus 157 ~DP 159 (234)
T PF04445_consen 157 FDP 159 (234)
T ss_dssp E--
T ss_pred ECC
Confidence 754
No 475
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=40.69 E-value=93 Score=30.86 Aligned_cols=88 Identities=18% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCEEEEECCCC-cHHHHHHhcC---C-CccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~---~-V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+||=.|+|. |..+..+++. . +++++. +....+.+.+.+....+.. ...-....+.+|+|+... .
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~-----~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~d~vl~~~--~ 168 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDP-----DAARRELAEALGPADPVAA--DTADEIGGRGADVVIEAS--G 168 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECC-----CHHHHHHHHHcCCCccccc--cchhhhcCCCCCEEEEcc--C
Confidence 35788788753 4444445543 2 444433 3334455555551111111 110011234689888432 1
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
. ...+.+..+.|+++|.++...
T Consensus 169 ~-----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 S-----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred C-----hHHHHHHHHHhcCCcEEEEEe
Confidence 1 246788899999999998754
No 476
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=40.53 E-value=72 Score=32.92 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=47.2
Q ss_pred CCEEEEECCC-CcHHHHHHhcC---C-CccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC--CC-C-CCCCCccEEEec
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK--RL-P-YPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~---~-V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~--~L-p-~~d~sFDlVv~s 226 (555)
..+||=+|+| .|.++..+++. . |++++ .++...+.+++.+....+...+.. .+ . .....+|+|+-.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~-----~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVD-----PSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC-----CCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 3577778764 22344444442 2 44443 334455666665543221111100 01 0 122369999843
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.. ....+....+.|+++|.+++...
T Consensus 239 ~g-------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 SG-------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 21 12356778899999999997653
No 477
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.34 E-value=62 Score=27.83 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=45.1
Q ss_pred CEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccch
Q 008748 157 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 236 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~ 236 (555)
.+|| +-||+|.-+..++. ...+.+.+++.++.+...+..+++-....+|+|+..-- +
T Consensus 4 ~~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pq-i------ 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQ-V------ 60 (95)
T ss_pred cEEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECch-H------
Confidence 3566 56999965554443 23356678888888887776555422346899986531 2
Q ss_pred HHHHHHHHhhcCCCcE
Q 008748 237 GILLLELDRLLRPGGY 252 (555)
Q Consensus 237 ~~~L~el~RvLkPGG~ 252 (555)
...+.++...+.+-|.
T Consensus 61 ~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 61 AYMLPDLKKETDKKGI 76 (95)
T ss_pred HHHHHHHHHHhhhcCC
Confidence 2246667766665443
No 478
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=39.38 E-value=87 Score=32.82 Aligned_cols=90 Identities=16% Similarity=0.083 Sum_probs=48.6
Q ss_pred CCEEEEECCCC-cHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-----C-CCCCCccEEE
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAH 224 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-----p-~~d~sFDlVv 224 (555)
..+||=.|+|. |.++..+++. .|++++ .+....+++++.|....+. ....+. . .....+|+|+
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~-----~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVD-----IDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc-----CCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEE
Confidence 45788888742 3444555543 244443 3445556666665432221 111111 0 1223589888
Q ss_pred ecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 225 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 225 ~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
-.- - . ...+.+..+.|++||.+++...
T Consensus 251 d~~--g----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 251 DAV--G----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ECC--C----C-HHHHHHHHHHhccCCEEEEECC
Confidence 332 1 1 2367788899999999998653
No 479
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=39.17 E-value=68 Score=33.86 Aligned_cols=88 Identities=19% Similarity=0.182 Sum_probs=47.7
Q ss_pred CEEEEECCC-CcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-----CCCCCCccEEEec
Q 008748 157 RNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCS 226 (555)
Q Consensus 157 ~~VLDIGCG-tG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-----p~~d~sFDlVv~s 226 (555)
.+||=.|+| .|.++..+++. .|++++ .++...+++++.|....+...+ ..+ ....+.+|+|+-.
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~-----~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vid~ 266 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVD-----LNEDKLALARELGATATVNAGD-PNAVEQVRELTGGGVDYAFEM 266 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEc-----CCHHHHHHHHHcCCceEeCCCc-hhHHHHHHHHhCCCCCEEEEC
Confidence 467778875 23444445542 244443 3455556666666432221111 110 0112358988843
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.. . ...+....+.|++||.+++..
T Consensus 267 ~G--~-----~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 267 AG--S-----VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CC--C-----hHHHHHHHHHHhcCCEEEEEc
Confidence 21 0 246788889999999998765
No 480
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=38.94 E-value=11 Score=36.93 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=30.6
Q ss_pred hcccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 448 VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 448 ~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
.||-++ ....+.-||+|=+-+|+.-... =.-..|+=-+-+.|+|||++++-.+.
T Consensus 124 ~~NL~~-~~~~~~~fD~I~CRNVlIYF~~--~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 124 RHNLLD-PDPPFGRFDLIFCRNVLIYFDP--ETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp E--TT--S------EEEEEE-SSGGGS-H--HHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred ecccCC-CCcccCCccEEEecCEEEEeCH--HHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 456666 4455679999999999873321 12346777788999999999997653
No 481
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=38.55 E-value=31 Score=38.42 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=59.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCC--eEEEEeCCC----CCCCCCCCccEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTK----RLPYPSRSFELA 223 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~----~Lp~~d~sFDlV 223 (555)
+.-+|||.=|++|.-+...+.. .|++-|.++..+..-+.+.-. .+.. +.....|+. ..+-.+..||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~-N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL-NGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhh-cCchhhcccccchHHHHHHhccccccccceE
Confidence 3458999999999766666542 455556655544333322211 1111 223334432 223345789999
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.. -.| ..+..+|..+.+.++.||.|.++..+
T Consensus 188 DL----DPy-Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DL----DPY-GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ec----CCC-CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 83 222 23456899999999999999997643
No 482
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=37.67 E-value=15 Score=38.29 Aligned_cols=45 Identities=18% Similarity=0.434 Sum_probs=34.5
Q ss_pred CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchh
Q 008748 459 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS 505 (555)
Q Consensus 459 prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~ 505 (555)
+..||+|-+-++|..... =.-..|+-.+-+.|+|||++++--+..
T Consensus 221 ~~~fD~I~cRNvliyF~~--~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDK--TTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred CCCcceeeHhhHHhcCCH--HHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 478999999998863321 235678999999999999999876433
No 483
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=36.70 E-value=88 Score=31.59 Aligned_cols=89 Identities=20% Similarity=0.133 Sum_probs=48.1
Q ss_pred CCEEEEECCC-CcHHHHHHhcC---C-CccccCChhhhhHHHHHHHHHcCCCeEEEEeCC----CCCCCCCCCccEEEec
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGT----KRLPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~---~-V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~----~~Lp~~d~sFDlVv~s 226 (555)
..+||=+|+| .|.++..+++. . |++++. ++...+.+++.+....+...+. ..+. ....+|+|+-.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~ 194 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP-----SPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEF 194 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEEC
Confidence 3578888874 23344444442 2 444433 3445566666654322211110 0111 12358988843
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.. ....+.++.+.|+++|.+++..
T Consensus 195 ~G-------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 195 SG-------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CC-------ChHHHHHHHHHhcCCCEEEEec
Confidence 21 1346888899999999999765
No 484
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=36.67 E-value=35 Score=36.68 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=17.1
Q ss_pred CCEEEEECCCCcHHHHHHhc
Q 008748 156 IRNVLDVGCGVASFGAYLLS 175 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~ 175 (555)
+..+++||.|+|.++..++.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~ 97 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILR 97 (370)
T ss_pred CceEEEeCCCcChHHHHHHH
Confidence 45799999999999888775
No 485
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=35.84 E-value=97 Score=32.34 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=46.3
Q ss_pred CCEEEEECCCC-cHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC--CCCC-----C-CCCCcc--
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT--KRLP-----Y-PSRSFE-- 221 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~--~~Lp-----~-~d~sFD-- 221 (555)
..+||=+|+|. |.++..++.. .+++++. ++...+++++.+....+...+. ..+. + ....+|
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~-----~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDI-----DPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC-----CHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 46899999853 4555555543 3444433 3445566666554322211110 0000 0 112354
Q ss_pred --EEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 222 --LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 222 --lVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+|+-.. - . ...+....++|++||.+++..
T Consensus 242 ~d~v~d~~--g----~-~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 242 GWKIFECS--G----S-KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred cCEEEECC--C----C-hHHHHHHHHHHhcCCeEEEEC
Confidence 454111 1 1 246777888999999999865
No 486
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=35.26 E-value=10 Score=29.62 Aligned_cols=10 Identities=50% Similarity=1.597 Sum_probs=8.6
Q ss_pred cchhcccccC
Q 008748 445 IGTVHDWCES 454 (555)
Q Consensus 445 ~g~~~~~ce~ 454 (555)
+|.+|.|||.
T Consensus 57 vgqfh~wceq 66 (68)
T PF13051_consen 57 VGQFHEWCEQ 66 (68)
T ss_pred HHHHHHHHhh
Confidence 6889999984
No 487
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=33.96 E-value=1.3e+02 Score=31.06 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=24.4
Q ss_pred CCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 217 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 217 d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.+.+|+|+-... . ...+.+..+.|+++|.++...
T Consensus 232 ~~~~d~vld~~g-~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 232 GKGPDVVIECTG-A------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCEEEECCC-C------HHHHHHHHHHhhcCCEEEEEc
Confidence 345999984321 1 236888999999999998765
No 488
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=33.62 E-value=32 Score=34.30 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccC
Q 008748 379 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD 419 (555)
Q Consensus 379 ~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~ 419 (555)
-|.+.--.|...++.. =-.-|++|||||+--.|..
T Consensus 46 DWS~~yp~f~~~~~~k------vefaDIGCGyGGLlv~Lsp 80 (249)
T KOG3115|consen 46 DWSKYYPDFRRALNKK------VEFADIGCGYGGLLMKLAP 80 (249)
T ss_pred cHHHhhhhhhhhcccc------ceEEeeccCccchhhhccc
Confidence 4777555555544422 2378999999999877753
No 489
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=33.47 E-value=13 Score=37.30 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=39.9
Q ss_pred EEEecccCCC--CchhHHhhccccchhcccccCCCCC-CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEE
Q 008748 424 VMNVAPVRMS--ARLKIIYDRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 424 vmnv~p~~~~--~~l~~i~~rgl~g~~~~~ce~~~ty-prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
.-||+|..+. |+|+-+-|-++=|+|.| || |-.=|+.| ..+ -+=|+|+|||.+-.
T Consensus 148 k~nViil~g~WeDvl~~L~d~~FDGI~yD------Ty~e~yEdl~~-------~hq----------h~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 148 KENVIILEGRWEDVLNTLPDKHFDGIYYD------TYSELYEDLRH-------FHQ----------HVVRLLKPEGVFSY 204 (271)
T ss_pred ccceEEEecchHhhhccccccCcceeEee------chhhHHHHHHH-------HHH----------HHhhhcCCCceEEE
Confidence 4699999986 99999999999999964 77 55557777 222 13377888877653
No 490
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=33.46 E-value=1e+02 Score=31.61 Aligned_cols=81 Identities=23% Similarity=0.178 Sum_probs=44.5
Q ss_pred CEEEEECCC-CcHHHHHHhcC---C-CccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 157 RNVLDVGCG-VASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 157 ~~VLDIGCG-tG~~a~~La~~---~-V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
.++|=+||| .|.++..++.. . |.++|.. ....+.+.... ..+.... ....||+|+-... .
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~-----~~rl~~a~~~~------~i~~~~~--~~~g~Dvvid~~G--~ 210 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN-----PRRRDGATGYE------VLDPEKD--PRRDYRAIYDASG--D 210 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-----HHHHHhhhhcc------ccChhhc--cCCCCCEEEECCC--C
Confidence 467877875 45566666643 2 3333332 23333333211 1121111 2246898884431 1
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
...+..+.+.|++||.+++..
T Consensus 211 -----~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 211 -----PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -----HHHHHHHHHhhhcCcEEEEEe
Confidence 246788899999999999865
No 491
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=33.19 E-value=31 Score=33.92 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=38.8
Q ss_pred eeEeeccCCcchhhhhccC--CCceEEEe--cccCCCCchh-HHhhccc---cchhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKD--KDVWVMNV--APVRMSARLK-IIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~--~~~wvmnv--~p~~~~~~l~-~i~~rgl---~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
.+|+||-||.|.|+-.+.. +..-|.-+ -|..- .-|. -|.--++ |=+++.=|..|.. ..++|-+...-
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--- 177 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--- 177 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-----
T ss_pred eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC---
Confidence 4899999999999876654 44333322 12111 1111 0111122 3222333444443 45667443221
Q ss_pred ccccCCCChhhhhhhhcccccCCceE
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFV 498 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~ 498 (555)
-.. ....|=+.-+++|+||.+
T Consensus 178 --p~~---~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 --PES---SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TSS---GGGGHHHHHHHEEEEEEE
T ss_pred --hHH---HHHHHHHHHHHhcCCcEE
Confidence 111 224555677788888875
No 492
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=33.06 E-value=1e+02 Score=32.10 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=46.2
Q ss_pred CCEEEEECCCC-cHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGV-ASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+||=+|||. |.++..++. ..|++++.+ +...+.+++.+. ... . ..+. .+..+|+|+-.-.
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~-----~~k~~~a~~~~~--~~~-~--~~~~-~~~g~d~viD~~G- 231 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKH-----QEKLDLFSFADE--TYL-I--DDIP-EDLAVDHAFECVG- 231 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCc-----HhHHHHHhhcCc--eee-h--hhhh-hccCCcEEEECCC-
Confidence 46899999863 334444433 135555544 334455543221 111 1 1111 1124898883221
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
. ......+.+..++|++||.+++..
T Consensus 232 --~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 232 --G-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred --C-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 0 001346888999999999999765
No 493
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=33.04 E-value=1.3e+02 Score=30.54 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=49.6
Q ss_pred CCEEEEECC--CCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-----CCCCCCccEEEeccc
Q 008748 156 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGC--GtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-----p~~d~sFDlVv~s~~ 228 (555)
..+||=.|+ |.|.++..+++. .++.+.....+....+++++.|....+. .....+ ....+.+|+|+-...
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~~~~gvd~vld~~g 220 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKELGFDAVFN-YKTVSLEEALKEAAPDGIDCYFDNVG 220 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCCEEEe-CCCccHHHHHHHHCCCCcEEEEECCC
Confidence 357887774 556666666653 1222222223344445666655432221 111111 011246898884321
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
...+.+..+.|+++|.++...
T Consensus 221 --------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 --------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred --------HHHHHHHHHhhccCCEEEEEc
Confidence 246788999999999998754
No 494
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=33.00 E-value=50 Score=36.30 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=59.8
Q ss_pred cCCChhhHhHh---HhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhcc--------CC--CceEEEecccCC
Q 008748 366 VGVTTEEFHED---IGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK--------DK--DVWVMNVAPVRM 432 (555)
Q Consensus 366 ~~~~~~~~~~d---~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~--------~~--~~wvmnv~p~~~ 432 (555)
.|+..+.|.|- -+.|-+ +.-|..--. .-..+.-+.||-.|+|||||++. +. +.|+.|-=|.+.
T Consensus 174 y~iG~d~f~E~s~~eE~~Dr-Lr~~VEECD---~lQGFq~l~Did~GfgG~as~~le~l~DEys~~~v~tw~~~~~p~s~ 249 (483)
T KOG2530|consen 174 YSIGYDVFTENSYQEEFCDR-LRFYVEECD---TLQGFQLLSDIDDGFGGFASKLLEELQDEYSKKAVFTWGHNPRPFSQ 249 (483)
T ss_pred cccchhhhhccchhHHHHHH-HHHHHHhcc---cccceEEEEecCCCchhHHHHHHHHHHHhhcCCceeccccCCCCCCc
Confidence 46666777654 356665 666654221 11357889999999999999985 22 459999866654
Q ss_pred C---CchhH---H--hhccccchhccc--ccCCCCCCCccchhhcccccc
Q 008748 433 S---ARLKI---I--YDRGLIGTVHDW--CESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 433 ~---~~l~~---i--~~rgl~g~~~~~--ce~~~typrtydl~h~~~~~s 472 (555)
. .||.- + -.+||+-+-... --|++|=+-+=|+.|++.+..
T Consensus 250 ~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~~~~~~~tsA~~a 299 (483)
T KOG2530|consen 250 DFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASGLGDLWETSAKLA 299 (483)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccccccHHHHHHHHH
Confidence 3 33331 1 123433322211 124455455557888777654
No 495
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=32.39 E-value=39 Score=35.21 Aligned_cols=56 Identities=21% Similarity=0.494 Sum_probs=43.1
Q ss_pred CCCCCccchhhccccccccccCCCChhhhhh-hhcccccCCceEEEe-----------cchhHHHHHHHHHhhcCccc
Q 008748 456 STYPRTYDLLHAWKVFSEIEERGCSFEDLLI-EMDRMLRPEGFVIIR-----------DKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 456 ~typrtydl~h~~~~~s~~~~~~c~~~~~~~-e~drilrp~g~~i~r-----------d~~~~~~~~~~~~~~~~w~~ 521 (555)
+-|-.-||+|. || |++...|- |+.++|+|+|.+|+- ....+.++|+++|++-.|+-
T Consensus 217 ~ky~~~Fd~if----vs------~s~vh~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p 284 (289)
T PF14740_consen 217 SKYQNFFDLIF----VS------CSMVHFLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKP 284 (289)
T ss_pred HhhcCCCCEEE----Eh------hhhHhhcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 44556677766 22 66777777 899999999999976 33567899999999999985
No 496
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=32.22 E-value=1.3e+02 Score=31.12 Aligned_cols=20 Identities=5% Similarity=-0.066 Sum_probs=17.4
Q ss_pred HHHHHHHhhcCCCcEEEEEc
Q 008748 238 ILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 238 ~~L~el~RvLkPGG~lvis~ 257 (555)
..+.+..+.|++||.+++..
T Consensus 241 ~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 241 QTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred HHHHHHHHHhhcCCEEEEEc
Confidence 47888999999999999875
No 497
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=32.08 E-value=1.4e+02 Score=30.56 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=47.9
Q ss_pred CCEEEEECCCC-cHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC----C--CCCCCCccEEEe
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----L--PYPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~----L--p~~d~sFDlVv~ 225 (555)
..+||-.|+|. |..+..+++. .++++.- +.......++.+.. .+....... + ..+...+|+|+.
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~-----s~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDI-----DDERLEFARELGAD-DTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECC-----CHHHHHHHHHhCCC-EEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 35788888763 5666666654 3333322 23333444444422 111111111 1 013345899985
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
... ....+.++.+.|+++|.++...
T Consensus 234 ~~g-------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 234 ATG-------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCC-------CHHHHHHHHHHHhcCCEEEEEc
Confidence 321 0246888999999999998754
No 498
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=31.89 E-value=74 Score=33.51 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=53.0
Q ss_pred CCEEEEECC--CCcHHHHHHhcCC---CccccCChhhhhHHHHHHHHHcCCCeEEE--EeCC-CCC-C-CCCCCccEEEe
Q 008748 156 IRNVLDVGC--GVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLG--VLGT-KRL-P-YPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGC--GtG~~a~~La~~~---V~~vdis~~dls~a~i~~A~~rg~~v~~~--~~d~-~~L-p-~~d~sFDlVv~ 225 (555)
..+||=.|+ |.|.++..|++.. +.++. .+.+..+++++.|....+. ..|. +.. . .....+|+|+.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~-----~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVV-----SSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEe-----cCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 468888884 5678888888752 22222 2233334666666543322 1111 111 1 12246999996
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.-. ...+.+..+.|+++|.++....
T Consensus 218 ~vG--------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 218 TVG--------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCC--------HHHHHHHHHHhccCCEEEEEec
Confidence 542 4568889999999999998553
No 499
>PRK11524 putative methyltransferase; Provisional
Probab=31.67 E-value=1.3e+02 Score=30.83 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCcHHHHHHh--cCCCccccCChhhhhHHH
Q 008748 155 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQ 192 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La--~~~V~~vdis~~dls~a~ 192 (555)
.+..|||-=||+|+.+.+.. +++.+|+|+++.-...+.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGL 247 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHH
Confidence 34689999999997665543 578999999886554443
No 500
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=31.58 E-value=1.3e+02 Score=31.40 Aligned_cols=157 Identities=18% Similarity=0.288 Sum_probs=85.5
Q ss_pred hHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH-------Hhhccccc
Q 008748 376 DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI-------IYDRGLIG 446 (555)
Q Consensus 376 d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~-------i~~rgl~g 446 (555)
.|+.|-+.|-.=.+-. ....+. -++|.+||+|..+-+|... | ---|.-++-+ .-+.+ .---|-|+
T Consensus 129 ETEE~V~~Vid~~~~~--~~~~~~--~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNS--EHSKHT--HILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred cHHHHHHHHHHHHhhh--hhcccc--eEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 3788888876432211 122222 7999999999998888642 3 1112222221 22222 22246688
Q ss_pred hhcc--cccCCCCCC---Cccchhhccccc--cc----------cc--------cCCC--ChhhhhhhhcccccCCceEE
Q 008748 447 TVHD--WCESFSTYP---RTYDLLHAWKVF--SE----------IE--------ERGC--SFEDLLIEMDRMLRPEGFVI 499 (555)
Q Consensus 447 ~~~~--~ce~~~typ---rtydl~h~~~~~--s~----------~~--------~~~c--~~~~~~~e~drilrp~g~~i 499 (555)
+.|. =-+.|.+|| -+||+|=++-=. ++ .+ ...| .+..+..=.=|.|+|||++.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 8887 566778887 688887655321 10 00 0001 12245556679999999999
Q ss_pred Ee-----cchhHHHHHHH-HHhhcCccceecccccccccCCCCCceEEEEEe
Q 008748 500 IR-----DKSSIINYIRK-FITALKWDGWLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 500 ~r-----d~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
+. +...++..+-. ..+.--|.+.+. .| ..+.+++++..+
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~-----~D--f~~~~Rfv~i~r 327 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVV-----SD--FAGRPRFVIIHR 327 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhhee-----ec--ccCCcceEEEEe
Confidence 75 33444333322 222334555321 11 146788887665
Done!