BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008749
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 320 bits (819), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 194/506 (38%), Positives = 296/506 (58%), Gaps = 14/506 (2%)
Query: 48 ILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFE 107
+L + ++ P L+N A G TY + + L K + + DV + PSS E
Sbjct: 28 VLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVIMLFLPSSPE 86
Query: 108 IPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPP-----NIRT 162
+ + G +++ ANP + +E++ S+ + + K+ +++
Sbjct: 87 FVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKV 146
Query: 163 VLVDS-PEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISL 221
+ VDS P+ S Q D +P ++ D L YSSGTTG KGV+LTH+ +I+
Sbjct: 147 MCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITS 206
Query: 222 VASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRV-VAVSETAVFMERFDFETM 280
VA V+ G NP S +V L LP+FH++ +++ + V + M +F+ ++
Sbjct: 207 VA--QQVD-GDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSL 263
Query: 281 LKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPS 340
L ++KYK++ PV PP+++++ KS K+DLSSL+ + GGAPLGKE+ D + KFP
Sbjct: 264 LGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQ 323
Query: 341 VEIIQGYGLTECGG-LASSMRDSEE--TKRHGSVGRLHELMEAKVVDPVTGDALSPAQKG 397
+ QGYG+TE G LA + ++E + G+ G + E K+VDP TG +L Q G
Sbjct: 324 ARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383
Query: 398 ELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQ 457
E+ +RG IMKGY+ D +AT T+D EGWL TGD+ Y D + LFIVDRLKELIKYK +Q
Sbjct: 384 EICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQ 443
Query: 458 IPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAP 517
+ PAELE LL ++PEI+DAAV+ DE+AG++P+AFVV+ S E ++ +I+KQV
Sbjct: 444 VAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIF 503
Query: 518 YKKIRRVAFVNSIPKSEAGKILRREL 543
YK+I+RV F+ +IPK+ +GKILR+ L
Sbjct: 504 YKRIKRVFFIEAIPKAPSGKILRKNL 529
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 317 bits (811), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 201/540 (37%), Positives = 304/540 (56%), Gaps = 30/540 (5%)
Query: 23 FHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSL 82
F S P I +P LS+ + + + AT P L+N TG TY + + +
Sbjct: 48 FRSKLPDIYIP---NHLSLHDYIFQNISEFATK---PCLINGPTGHVYTYSDVHVISRQI 101
Query: 83 TLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSK 142
+ K +++NDV +L P+ E + + + G + ANP + +EI+ Q S
Sbjct: 102 AANFHK-LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160
Query: 143 PSIAFATSRTSHKLPP-----NIRTVLVDSPE----------FLSLLSTQNQNDVVISPP 187
+ +R K+ P + V +D E F L + + VI
Sbjct: 161 TKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDS- 219
Query: 188 AVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLIT 247
++ D L YSSGTTG KGV+LTH+ +++ VA V+ G NP S +V L
Sbjct: 220 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA--QQVD-GENPNLYFHSDDVILCV 276
Query: 248 LPLFHVFGFLALVRV-VAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSE 306
LP+FH++ +++ + V + M +F+ +L+ + + K+T P+ PP+V+A+ KS
Sbjct: 277 LPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS 336
Query: 307 LTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGG-LASSMRDSEET 365
T+KYDLSS++ + G APLGKE+ D KFP+ ++ QGYG+TE G LA S+ ++E
Sbjct: 337 ETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEP 396
Query: 366 --KRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDS 423
+ G+ G + E K+VDP TGD+LS Q GE+ +RG IMKGY+ + AT ET+D
Sbjct: 397 FPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDK 456
Query: 424 EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPD 483
+GWL TGD+ D + LFIVDRLKELIKYK +Q+ PAELE LL +P+I D AV+ +
Sbjct: 457 DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKE 516
Query: 484 EEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRREL 543
E AG++P+AFVV+ S ++E + F++KQV YK+I +V F SIPK+ +GKILR++L
Sbjct: 517 EAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDL 576
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/541 (36%), Positives = 293/541 (54%), Gaps = 38/541 (7%)
Query: 26 VRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLS 85
V PK P P + + TQ + + A A F NA TG +Y E+L ++ L +
Sbjct: 12 VGPK-PFYPIEEGSAGTQLR-KYMERYAKLGAIAF-TNAVTGVDYSYAEYLEKSXXLGKA 68
Query: 86 LQKHYSLSKNDVAFIL-SPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPS 144
LQ + + +A + F IPV+ + L +GV V+P N + + E+ H L +SKP+
Sbjct: 69 LQNYGLVVDGRIALCSENCEEFFIPVI--AGLFIGVGVAPTNEIYTLRELVHSLGISKPT 126
Query: 145 IAFATSR------TSHKLPPNIRTVL-----VDSPEFLSLLSTQNQNDVVISPPA----- 188
I F++ + T K I+T++ VD + L + +N +PP
Sbjct: 127 IVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN----TPPGFQASS 182
Query: 189 -----VVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEV 243
V + A+++ SSG+TG KGV LTH NI++ + YG N P G
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSP---GTA 238
Query: 244 SLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALT 303
L +P H FG + + V + +FD ET LKT+ YK TS+ + P L L
Sbjct: 239 VLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 304 KSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSE 363
KSEL KYDLS+L ++ GGAPL KEV + +F + QGYGLTE ++ + E
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET--TSAIIITPE 356
Query: 364 ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDS 423
+ G+ G++ L +AKV+D T +L P ++GE+ ++GP +MKGY+ + +AT E +D
Sbjct: 357 GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE 416
Query: 424 EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPD 483
EGWL TGD+ Y+D FIVDRLK LIKYK YQ+PPAELE +L +P I DA V PD
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 484 EEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVNSIPKSEAGKILRRE 542
AG++P A VV + G ++ E ++MD++A QV+ K++R V FV+ +PK GKI R
Sbjct: 477 PVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRA 536
Query: 543 L 543
+
Sbjct: 537 I 537
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/541 (36%), Positives = 293/541 (54%), Gaps = 38/541 (7%)
Query: 26 VRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLS 85
V PK P P + + TQ + + A A F NA TG +Y E+L ++ L +
Sbjct: 12 VGPK-PFYPIEEGSAGTQLR-KYMERYAKLGAIAF-TNAVTGVDYSYAEYLEKSCXLGKA 68
Query: 86 LQKHYSLSKNDVAFIL-SPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPS 144
LQ + + +A + F IPV+ + L +GV V+P N + + E+ H L +SKP+
Sbjct: 69 LQNYGLVVDGRIALCSENCEEFFIPVI--AGLFIGVGVAPTNEIYTLRELVHSLGISKPT 126
Query: 145 IAFATSR------TSHKLPPNIRTVL-----VDSPEFLSLLSTQNQNDVVISPPA----- 188
I F++ + T K I+T++ VD + L + +N +PP
Sbjct: 127 IVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN----TPPGFQASS 182
Query: 189 -----VVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEV 243
V + A+++ SSG+TG KGV LTH NI++ + YG N P G
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSP---GTA 238
Query: 244 SLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALT 303
L +P H FG + + V + +FD ET LKT+ YK TS+ + P L L
Sbjct: 239 VLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 304 KSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSE 363
KSEL KYDLS+L ++ GGAPL KEV + +F + QGYGLTE ++ + E
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET--TSAIIITPE 356
Query: 364 ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDS 423
+ G+ G++ L +AKV+D T +L P ++GE+ ++GP +MKGY+ + +AT E +D
Sbjct: 357 GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE 416
Query: 424 EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPD 483
EGWL TGD+ Y+D FIVDRLK LIKYK YQ+PPAELE +L +P I DA V PD
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 484 EEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVNSIPKSEAGKILRRE 542
AG++P A VV + G ++ E ++MD++A QV+ K++R V FV+ +PK GKI R
Sbjct: 477 PVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRA 536
Query: 543 L 543
+
Sbjct: 537 I 537
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 301 bits (771), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 198/541 (36%), Positives = 293/541 (54%), Gaps = 38/541 (7%)
Query: 26 VRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLS 85
V PK P P + + TQ + + A A F NA TG +Y E+L ++ L +
Sbjct: 12 VGPK-PFYPIEEGSAGTQLR-KYMERYAKLGAIAF-TNAVTGVDYSYAEYLEKSCXLGKA 68
Query: 86 LQKHYSLSKNDVAFIL-SPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPS 144
LQ + + +A + F IPV+ + L +GV V+P N + + E+ H L +SKP+
Sbjct: 69 LQNYGLVVDGRIALCSENCEEFFIPVI--AGLFIGVGVAPTNEIYTLRELVHSLGISKPT 126
Query: 145 IAFATSR------TSHKLPPNIRTVL-----VDSPEFLSLLSTQNQNDVVISPPA----- 188
I F++ + T K I+T++ VD + L + +N +PP
Sbjct: 127 IVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN----TPPGYQASS 182
Query: 189 -----VVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEV 243
V + A+++ SSG+TG KGV LTH NI++ + YG N P G
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSP---GTA 238
Query: 244 SLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALT 303
L +P H FG + + V + +FD ET LKT+ YK T++ + P L L
Sbjct: 239 VLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Query: 304 KSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSE 363
KSEL KYDLS+L ++ GGAPL KEV + +F + QGYGLTE ++ + E
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET--TSAIIITPE 356
Query: 364 ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDS 423
+ G+ G++ L +AKV+D T +L P ++GE+ ++GP +MKGY+ + +AT E +D
Sbjct: 357 GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE 416
Query: 424 EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPD 483
EGWL TGD+ Y+D FIVDRLK LIKYK YQ+PPAELE +L +P I DA V PD
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 484 EEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVNSIPKSEAGKILRRE 542
AG++P A VV + G ++ E ++MD++A QV+ K++R V FV+ +PK GKI R
Sbjct: 477 PVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRA 536
Query: 543 L 543
+
Sbjct: 537 I 537
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 180/507 (35%), Positives = 272/507 (53%), Gaps = 30/507 (5%)
Query: 70 LTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLG 129
+TY E+ L ++ K Y L + S +S + + L +GV V+P N +
Sbjct: 85 ITYSEYFEMACRLAETM-KRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIY 143
Query: 130 STSEISHQLHLSKPSIAFATSR-------TSHKLPPNIRTVLVDSPE-------FLSLLS 175
+ E+ + L +S+P+I F + R KLP + V++DS E S +
Sbjct: 144 NERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIE 203
Query: 176 TQ-----NQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEY 230
+ N+ D + P + ++ A+++ SSG+TG KGV LTH+NI F H
Sbjct: 204 SHLPAGFNEYDYI--PDSFDRETATALIMNSSGSTGLPKGVELTHKNI---CVRFSHCRD 258
Query: 231 GANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLT 290
+ P + L +P H FG + + V M RF+ E L+++ YK+
Sbjct: 259 PVFGNQIIPDTAI-LTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQ 317
Query: 291 SMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLT 350
S + P L KS L KYDLS+L ++ GGAPL KEV + ++F I QGYGLT
Sbjct: 318 SALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLT 377
Query: 351 EC-GGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKG 409
E + + R ++ + G+ G++ AK+VD TG L Q+GEL ++GP IMKG
Sbjct: 378 ETTSAIIITPRGRDD--KPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKG 435
Query: 410 YIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQS 469
Y+ + +AT +D +GWL +GD+ Y+D +G+ FIVDRLK LIKYK YQ+PPAELE +L
Sbjct: 436 YVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQ 495
Query: 470 NPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVN 528
+P I DA V PD +AG++P A VV + G ++ E ++MD++A QV K++R V FV+
Sbjct: 496 HPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVD 555
Query: 529 SIPKSEAGKILRRELVNHALSGNLSKL 555
+PK GKI R++ + G SKL
Sbjct: 556 EVPKGLTGKIDARKIREILMMGKKSKL 582
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 272/509 (53%), Gaps = 32/509 (6%)
Query: 70 LTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLG 129
+TY E+ + L ++ K Y L+ N + S +S + + L +GV V+PAN +
Sbjct: 51 ITYAEYFEMSVRLAEAM-KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 130 STSEISHQLHLSKPSIAFATSR-------TSHKLPPNIRTVLVDSPE----FLSLLSTQ- 177
+ E+ + +++S+P++ F + + KLP + +++DS F S+ +
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVT 169
Query: 178 -------NQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEY 230
N+ D V P + A+++ SSG+TG KGV L HR + F H
Sbjct: 170 SHLPPGFNEYDFV--PESFDRDKTIALIMNSSGSTGLPKGVALPHR---TACVRFSHARD 224
Query: 231 GANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLT 290
+ P + L +P H FG + + V M RF+ E L+++ YK+
Sbjct: 225 PIFGNQIIPDTAI-LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ 283
Query: 291 SMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLT 350
S + P L KS L KYDLS+L ++ GGAPL KEV + ++F I QGYGLT
Sbjct: 284 SALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 343
Query: 351 ECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGY 410
E ++ + E + G+VG++ EAKVVD TG L Q+GEL +RGP IM GY
Sbjct: 344 ET--TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY 401
Query: 411 IGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSN 470
+ + +AT +D +GWL +GD+ Y+D + FIVDRLK LIKYK YQ+ PAELE +L +
Sbjct: 402 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461
Query: 471 PEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVNS 529
P I DA V PD++AG++P A VV + G ++ E +++D++A QV KK+R V FV+
Sbjct: 462 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDE 521
Query: 530 IPKSEAGKILR---RELVNHALSGNLSKL 555
+PK GK+ RE++ A G SKL
Sbjct: 522 VPKGLTGKLDARKIREILIKAKKGGKSKL 550
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 272/509 (53%), Gaps = 32/509 (6%)
Query: 70 LTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLG 129
+TY E+ + L ++ K Y L+ N + S +S + + L +GV V+PAN +
Sbjct: 56 ITYAEYFEMSVRLAEAM-KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 114
Query: 130 STSEISHQLHLSKPSIAFATSR-------TSHKLPPNIRTVLVDSPE----FLSLLSTQ- 177
+ E+ + +++S+P++ F + + KLP + +++DS F S+ +
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVT 174
Query: 178 -------NQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEY 230
N+ D V P + A+++ SSG+TG KGV L HR + F H
Sbjct: 175 SHLPPGFNEYDFV--PESFDRDKTIALIMNSSGSTGLPKGVALPHR---TACVRFSHARD 229
Query: 231 GANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLT 290
+ P + L +P H FG + + V M RF+ E L+++ YK+
Sbjct: 230 PIFGNQIIPDTAI-LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ 288
Query: 291 SMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLT 350
S + P L KS L KYDLS+L ++ GGAPL KEV + ++F I QGYGLT
Sbjct: 289 SALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 348
Query: 351 ECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGY 410
E ++ + E + G+VG++ EAKVVD TG L Q+GEL +RGP IM GY
Sbjct: 349 ET--TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY 406
Query: 411 IGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSN 470
+ + +AT +D +GWL +GD+ Y+D + FIVDRLK LIKYK YQ+ PAELE +L +
Sbjct: 407 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 466
Query: 471 PEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVNS 529
P I DA V PD++AG++P A VV + G ++ E +++D++A QV KK+R V FV+
Sbjct: 467 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDE 526
Query: 530 IPKSEAGKILR---RELVNHALSGNLSKL 555
+PK GK+ RE++ A G SKL
Sbjct: 527 VPKGLTGKLDARKIREILIKAKKGGKSKL 555
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 279 bits (714), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 272/509 (53%), Gaps = 32/509 (6%)
Query: 70 LTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLG 129
+TY E+ + L ++ K Y L+ N + S +S + + L +GV V+PAN +
Sbjct: 51 ITYAEYFEMSVRLAEAM-KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 130 STSEISHQLHLSKPSIAFATSR-------TSHKLPPNIRTVLVDSPE----FLSLLSTQ- 177
+ E+ + +++S+P++ F + + KLP + +++DS F S+ +
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVT 169
Query: 178 -------NQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEY 230
N+ D V P + A+++ SSG+TG KGV L HR + F H
Sbjct: 170 SHLPPGFNEYDFV--PESFDRDKTIALIMNSSGSTGLPKGVALPHR---TACVRFSHARD 224
Query: 231 GANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLT 290
+ P + L +P H FG + + V M RF+ E L+++ YK+
Sbjct: 225 PIFGNQIIPDTAI-LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ 283
Query: 291 SMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLT 350
S + P L KS L KYDLS+L ++ GGAPL KEV + ++F I QGYGLT
Sbjct: 284 SALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 343
Query: 351 ECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGY 410
E ++ + E + G+VG++ EAKVVD TG L Q+GEL +RGP IM GY
Sbjct: 344 ET--TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY 401
Query: 411 IGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSN 470
+ + +AT +D +GWL +GD+ Y+D + FIVDRLK LIKYK YQ+ PAELE +L +
Sbjct: 402 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461
Query: 471 PEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVNS 529
P I DA V PD++AG++P A VV + G ++ E +++D++A QV KK+R V FV+
Sbjct: 462 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDE 521
Query: 530 IPKSEAGKILR---RELVNHALSGNLSKL 555
+PK GK+ RE++ A G SKL
Sbjct: 522 VPKGLTGKLDARKIREILIKAKKGGKSKL 550
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 275 bits (703), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 272/509 (53%), Gaps = 32/509 (6%)
Query: 70 LTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLG 129
+TY E+ + L ++ K Y L+ N + S +S + + L +GV V+PAN
Sbjct: 56 ITYAEYFEMSVRLAEAM-KRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCY 114
Query: 130 STSEISHQLHLSKPSIAFATSR-------TSHKLPPNIRTVLVDSPE----FLSLLSTQ- 177
+ E+ + +++S+P++ F + + KLP + +++DS F S+ +
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVT 174
Query: 178 -------NQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEY 230
N+ D V P + A+++ SSG+TG KGV L HR +L F H
Sbjct: 175 SHLPPGFNEYDFV--PESFDRDKTIALIMNSSGSTGLPKGVALPHR---ALAVRFSHARD 229
Query: 231 GANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLT 290
+ P + L +P H FG + + V M RF+ E L+++ YK+
Sbjct: 230 PIFGNQIAPDTAI-LSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQ 288
Query: 291 SMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLT 350
S + P L L KS L KYDLS+L ++ GGAPL KEV + ++F I QGYGLT
Sbjct: 289 SALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 348
Query: 351 ECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGY 410
E ++ + + + G+VG++ EAKVVD TG L Q+GEL +RGP IM GY
Sbjct: 349 ET--TSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGY 406
Query: 411 IGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSN 470
+ + +AT +D +GWL +GD+ Y+D + FIVDRLK LIKYK Q+ PAELE +L +
Sbjct: 407 VNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQH 466
Query: 471 PEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVNS 529
P I DA V PD++AG++P A VV + G ++ E +++D++A QV KK+R V FV+
Sbjct: 467 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDE 526
Query: 530 IPKSEAGKILR---RELVNHALSGNLSKL 555
+PK GK+ RE++ A G SKL
Sbjct: 527 VPKGLTGKLDARKIREILIKAKKGGKSKL 555
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 143/488 (29%), Positives = 224/488 (45%), Gaps = 45/488 (9%)
Query: 91 SLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATS 150
+ K + + P+S + ++L + P NP + E+ H L+ S+ + S
Sbjct: 73 GVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHS 132
Query: 151 RTSHKLPP-----NIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTT 205
P + V V E SL + V + D A++ Y+ GTT
Sbjct: 133 XLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTT 192
Query: 206 GKVKGVLLTHRNI------ISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLAL 259
G KGV LTH N+ +++ H + + P FH F +
Sbjct: 193 GXPKGVXLTHFNLAANALQLAVATGLSHXD-------------TIVGCXPXFHSAEFGLV 239
Query: 260 VRVVAVSETAVFMERFDFETMLKTVDKYKLT-SMPVSPPLVVALTKSELTKK-YDLSSLQ 317
V V V F+ E + + ++KYK T S V P L V + E + K YD S L+
Sbjct: 240 NLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLK 299
Query: 318 YLSCGGAPLGKEVTDKF------KEKFPSVEIIQGYGLTE-CGGLASS--MRDSEETKRH 368
+ G P+ + +K K P + Q +G TE C + ++ +R + T +
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDKSTTQ- 358
Query: 369 GSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIET--VDSEG- 425
G +E KV+ G L + GE+ +RGP I KGY K E D +G
Sbjct: 359 ---GVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGR 415
Query: 426 -WLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDE 484
+ +TGD+ + D GFL DR+KE+IKYK Y I P ELE LL + + D AVI PDE
Sbjct: 416 KFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDE 475
Query: 485 EAGQIPMAFVVRKPG--SSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRE 542
EAG++P AF+V KP ++E +++++ ++++ YK++R V FV +P++ +GK+LRR
Sbjct: 476 EAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRL 535
Query: 543 LVNHALSG 550
L G
Sbjct: 536 LREKEAEG 543
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 128/489 (26%), Positives = 226/489 (46%), Gaps = 36/489 (7%)
Query: 65 ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP 124
+T R+TY + N L ++K D +L P+S E L++ LG V P
Sbjct: 39 STDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP 97
Query: 125 ANPLGSTSEISHQLHLS--------KPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLST 176
N + E+S L S PS + + PP T + + L +
Sbjct: 98 INTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRS 157
Query: 177 QNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFH---HVEYGAN 233
++ P D ++Y+SGTTG KGV+ TH ++ S +S+ V Y
Sbjct: 158 AAADE----PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYR-- 211
Query: 234 PAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMP 293
+ L+ LP+FHV ++ T + M +FD + + + ++
Sbjct: 212 --------DRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGG 263
Query: 294 VSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECG 353
P ++ + + + D +Y GGAP+ + + + K ++E++QGY LTE
Sbjct: 264 AVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESC 321
Query: 354 GLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGD--ALSPAQKGELWLRGPTIMKGYI 411
G + + + ++ GS GR + V GD + +GE+ ++ ++K Y
Sbjct: 322 GGGTLLLSEDALRKAGSAGRATMFTDVAV----RGDDGVIREHGEGEVVIKSDILLKEYW 377
Query: 412 GDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
+AT + D+ GW +TGD+ D G+L+I DRLK++I + PAE+E ++ P
Sbjct: 378 NRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVP 436
Query: 472 EIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIP 531
+++ AVI PDE+ G+I A VV + ++E Q++++ ++A YK ++V F +IP
Sbjct: 437 GVSEVAVIGLPDEKWGEIAAAIVVADQ-NEVSEQQIVEYCGTRLARYKLPKKVIFAEAIP 495
Query: 532 KSEAGKILR 540
++ GKIL+
Sbjct: 496 RNPTGKILK 504
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 148/522 (28%), Positives = 239/522 (45%), Gaps = 50/522 (9%)
Query: 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVA 98
+S+ FTL+ +++ G RLT+ ++L + L L + + + VA
Sbjct: 1 MSLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 99 FILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLP- 157
ILS + E+ L ++ +G ++ P N + EI+ L PS+ A + +
Sbjct: 61 -ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119
Query: 158 --PNIRTV-----LVDS----PEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTG 206
P++ V + D F L S D S P +D V+++++ G
Sbjct: 120 VLPSLGGVKKAYAIGDGSGPFAPFKDLAS-----DTPFSAPEF-GAADGFVIIHTAAVGG 173
Query: 207 KVKGVLLTHRNII----SLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRV 262
+ +G L++ N++ SLV ++ E +V+L LPLFHV G ++ +
Sbjct: 174 RPRGALISQGNLLIAQSSLVDAWRLTE-----------ADVNLGMLPLFHVTGLGLMLTL 222
Query: 263 VAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCG 322
+V +FD + ++ +K+T M P++ + + L+SL+ ++
Sbjct: 223 QQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ--LASLRAVTGL 280
Query: 323 GAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLA--SSMRDSEETKRHGSVGRLHELMEA 380
P E ++F+ P+ +G +E GL+ + RD R S GR
Sbjct: 281 DTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-----RPKSAGRPLFWRTV 332
Query: 381 KVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGF 440
VVD L P + GE+ LRGPT+ KGY +N A + GW TGD+ FD++G+
Sbjct: 333 AVVD-AEDRPLPPGEVGEIVLRGPTVFKGYW-NNAAATQHAFRNGWHHTGDMGRFDADGY 390
Query: 441 LFIVDRL--KELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKP 498
LF R KELIK + PAE+E L+ +P IADA VI PD + + A V KP
Sbjct: 391 LFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKP 450
Query: 499 GSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILR 540
G SI L +F+A +A YKK + V FV ++PK G I R
Sbjct: 451 GESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDR 492
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 132/509 (25%), Positives = 221/509 (43%), Gaps = 46/509 (9%)
Query: 50 HKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIP 109
HK A TAA G +++Y E + + + L L D + S E
Sbjct: 17 HKLAIETAA--------GDKISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEAL 67
Query: 110 VLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKP--------------SIAFATSRTSHK 155
VLY + + G V P N + E+ + + ++P +IA T
Sbjct: 68 VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVET 127
Query: 156 LPPNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTH 215
L P+ R L D+ S D A +LY+SGTTG+ KG L+H
Sbjct: 128 LGPDGRGSLTDAAAGASEAFATIDR----------GADDLAAILYTSGTTGRSKGAXLSH 177
Query: 216 RNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSE-TAVFMER 274
N+ S S V+Y + +V + LP++H G V + + +F+ +
Sbjct: 178 DNLAS--NSLTLVDYWRFTPD-----DVLIHALPIYHTHGLFVASNVTLFARGSXIFLPK 230
Query: 275 FDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKF 334
FD + +L + T + P L +S K + G APL + ++
Sbjct: 231 FDPDKILDL--XARATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREW 288
Query: 335 KEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPA 394
K +++ YG TE S+ D + G+VG + A+V DP TG L
Sbjct: 289 SAKTGHA-VLERYGXTETNXNTSNPYDGDRVP--GAVGPALPGVSARVTDPETGKELPRG 345
Query: 395 QKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYK 454
G + ++GP + KGY + T +G+ TGDL D G++ I+ R K+L+
Sbjct: 346 DIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITG 405
Query: 455 AYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQ 514
+ + P E+E + + P + ++AVI P + G+ A VVR G++I+EAQ++ + Q
Sbjct: 406 GFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ 465
Query: 515 VAPYKKIRRVAFVNSIPKSEAGKILRREL 543
+A +K ++V FV+ +P++ GK+ + L
Sbjct: 466 LAKFKXPKKVIFVDDLPRNTXGKVQKNVL 494
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 228/507 (44%), Gaps = 55/507 (10%)
Query: 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPL 128
R TY E ++ L L + + D L + F YF++ +G V+ ANP
Sbjct: 47 RTTYAEVYQRARRLMGGL-RALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPR 105
Query: 129 GSTSEISHQLH-------LSKPSIAFATSRTSHKLPPNIRTVLVD--SPE-FLSLLSTQN 178
S EI++ L+ L P++ +L V++D +PE +L+
Sbjct: 106 LSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALG 165
Query: 179 QNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNII--SLVASFHHVEYGANPAE 236
+ + P V + A + Y++GTTG KGV+ +HR ++ SL AS G +E
Sbjct: 166 EE----ADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSE 218
Query: 237 PQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVF-MERFDFETMLKTVDKYKLTSMPVS 295
+V L +P+FHV + V V R D ++++ D +T
Sbjct: 219 K----DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGV 274
Query: 296 PPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGL 355
P + +AL + + L +L+ L GG+ + + +F+ VE+ QGYGLTE +
Sbjct: 275 PTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPV 332
Query: 356 A---------SSMRDSEETKRHGSVGRLHELMEAKVVD------PVTGDALSPAQKGELW 400
S+ + E+ G L+ +V D P G AL GE+
Sbjct: 333 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL-----GEVQ 387
Query: 401 LRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPP 460
L+GP I GY G+ +AT + +G+ +TGD+ +D G++ I DRLK+LIK I
Sbjct: 388 LKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447
Query: 461 AELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVV---RKPG-SSINEAQLMDFIAKQVA 516
+LE+ L +P++ +AAV+ P + + P+A VV KP +NE L AK
Sbjct: 448 VDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQL 507
Query: 517 PYKKIRRVAFVNSIPKSEAGKILRREL 543
P + F IP++ AGK L+R L
Sbjct: 508 PDAYV----FAEEIPRTSAGKFLKRAL 530
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 181/376 (48%), Gaps = 39/376 (10%)
Query: 180 NDVVI---SPPAVVNQS----DAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVE-YG 231
N+ V+ SP ++N S D A ++++SGTTG K V T RN H+ G
Sbjct: 143 NETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRN--------HYASAIG 194
Query: 232 ANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTS 291
+ L LP++H+ G L+R V T +++F+ E +L + ++T
Sbjct: 195 CKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITH 254
Query: 292 MPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDK-FKEKFPSVEIIQGYGLT 350
+ + P + L + L + Y+L Q + GGA L + + + P I +G+T
Sbjct: 255 ISLVPQTLNWLMQQGLHEPYNL---QKILLGGAKLSATMIETALQYNLP---IYNSFGMT 308
Query: 351 E-CGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKG 409
E C ++ + R +VG ++ K+ +P + GEL ++G +M G
Sbjct: 309 ETCSQFLTATPEMLHA-RPDTVGMPSANVDVKIKNP------NKEGHGELMIKGANVMNG 361
Query: 410 YI--GDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLL 467
Y+ D T E G+ TGD+ D G++ I DR K+LI I P ++E +
Sbjct: 362 YLYPTDLTGTFEN----GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVA 417
Query: 468 QSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRVAFV 527
+ P I+DA + +PD+ GQ+P + V + S I++AQL+ +++K +A YK + V
Sbjct: 418 KQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLSKHLAKYKVPKHFEKV 475
Query: 528 NSIPKSEAGKILRREL 543
+++P + GK+ R +L
Sbjct: 476 DTLPYTSTGKLQRNKL 491
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 121/446 (27%), Positives = 204/446 (45%), Gaps = 66/446 (14%)
Query: 124 PANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLSTQNQNDVV 183
P NP E++H L S PS+ A PP+ E L + DV
Sbjct: 97 PLNPKSGDKELAHILSDSAPSLVLA--------PPDA--------ELPPALGALERVDVD 140
Query: 184 IS-----PPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQ 238
+ P + D A+++Y+SGTTG KG ++ R + + + + Q
Sbjct: 141 VRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW--------Q 192
Query: 239 PSGEVSLIT-LPLFHVFGF-LALVRVVAVSETAVFMERF----------DFETML---KT 283
+GE L+ LPLFHV G L ++ + + + RF D TML T
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPT 252
Query: 284 VDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEI 343
+ ++P P L AL + L L G A L ++ +
Sbjct: 253 MYHRIAETLPADPELAKALAGARL-----------LVSGSAALPVHDHERIAAAT-GRRV 300
Query: 344 IQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVD----PVTGDALSPAQKGEL 399
I+ YG+TE L ++ ++ R G+VG +E ++V+ P+ AL GE+
Sbjct: 301 IERYGMTET--LMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIA--ALDGESVGEI 356
Query: 400 WLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDR-LKELIKYKAYQI 458
+RGP + Y+ AT +G+ +TGD+ D +G++ IV R +LIK Y+I
Sbjct: 357 QVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416
Query: 459 PPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINE-AQLMDFIAKQVAP 517
E+E+ L +PE+ +AAV PD + G+ +A++V ++ L D +A ++AP
Sbjct: 417 GAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAP 476
Query: 518 YKKIRRVAFVNSIPKSEAGKILRREL 543
+K+ R V +++++P+++ GKI++R L
Sbjct: 477 HKRPRVVRYLDAVPRNDMGKIMKRAL 502
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/494 (24%), Positives = 206/494 (41%), Gaps = 42/494 (8%)
Query: 62 MNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVV 121
+ A G ++Y E + + + L L D + S E VLY + + G V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 122 VSPANPLGSTSEISHQLHLSKPSIAFA--------------TSRTSHKLPPNIRTVLVDS 167
P N + E+ + + ++P I T L P+ R L D+
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDA 139
Query: 168 PEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHH 227
S D A +LY+SGTTG+ G +L+H N+ S S
Sbjct: 140 AAGASEAFATIDR----------GADDLAAILYTSGTTGRSXGAMLSHDNLAS--NSLTL 187
Query: 228 VEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSE-TAVFMERFDFETMLKTVDK 286
V+Y + +V + LP++H G V + + +F+ FD + +L +
Sbjct: 188 VDYWRFTPD-----DVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLM-- 240
Query: 287 YKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSV--EII 344
+ T + P L +S ++ G APL + D +E ++
Sbjct: 241 ARATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPL---LADTHREWSAXTGHAVL 297
Query: 345 QGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGP 404
+ YG+TE S+ D + G+VG + A+V DP TG L G + + GP
Sbjct: 298 ERYGMTETNMNTSNPYDGDRVP--GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGP 355
Query: 405 TIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELE 464
+ GY + T +G+ TGDL D G++ I+ R +L+ + + P E+E
Sbjct: 356 NVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIE 415
Query: 465 HLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRV 524
+ + P + ++AVI P + G+ A VVR G++I+EAQ++ + Q+A + V
Sbjct: 416 SEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXV 475
Query: 525 AFVNSIPKSEAGKI 538
FV+ +P++ G +
Sbjct: 476 IFVDDLPRNTMGAV 489
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 123/507 (24%), Positives = 222/507 (43%), Gaps = 42/507 (8%)
Query: 71 TYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGS 130
+Y E + + L QK + + D + P+ E + F+L LG + A P
Sbjct: 52 SYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 131 TSEISHQLHLSKPSIAF-----------ATSRTSHKLPPNIRTVLV--DSPEFLSLLSTQ 177
+SEI++ ++ + + +R P ++ ++V ++ EFL L
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPL---- 166
Query: 178 NQNDVVISPPAV--VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPA 235
D+ P + V SD A L S G+TG K + TH + I + V + +
Sbjct: 167 --EDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHST 224
Query: 236 EPQPSGEVSLITLPLFHVFGFLA--LVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMP 293
V L LP+ H + + ++ V+ V + +++ K+T
Sbjct: 225 -------VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITA 277
Query: 294 VSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECG 353
+ PPL + + +++ DLSSLQ L GGA E + K F + Q +G+ E
Sbjct: 278 LVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAE-- 334
Query: 354 GLASSMR--DSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYI 411
GL + R D EE + + E++V D D + P + G L RGP ++GY
Sbjct: 335 GLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRD-VKPGETGHLLTRGPYTIRGYY 393
Query: 412 GDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
+ + +G+ +TGD+ +G++ + R K+ I ++ E+E+ L ++P
Sbjct: 394 KAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHP 453
Query: 472 EIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQ-VAPYKKIRRVAFVNSI 530
+ DAA++ PD+ G+ F++ + + A+L F+ ++ +A YK RV FV S
Sbjct: 454 AVHDAAMVSMPDQFLGERSCVFIIPR-DEAPKAAELKAFLRERGLAAYKIPDRVEFVESF 512
Query: 531 PKSEAGKILR---RELVNHALSGNLSK 554
P++ GK+ + RE ++ L K
Sbjct: 513 PQTGVGKVSKKALREAISEKLLAGFKK 539
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/494 (23%), Positives = 203/494 (41%), Gaps = 42/494 (8%)
Query: 62 MNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVV 121
+ A G ++Y E + + + L L D + S E VLY + + G V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 122 VSPANPLGSTSEISHQLHLSKPSIAFA--------------TSRTSHKLPPNIRTVLVDS 167
P N + E+ + + ++P I T L P+ R L D+
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDA 139
Query: 168 PEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHH 227
S D A +LY+SGTTG+ G +L+H N+ S S
Sbjct: 140 AAGASEAFATIDR----------GADDLAAILYTSGTTGRSXGAMLSHDNLAS--NSLTL 187
Query: 228 VEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSE-TAVFMERFDFETMLKTVDK 286
V+Y + +V + LP++H G V + + +F+ FD + +L +
Sbjct: 188 VDYWRFTPD-----DVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLM-- 240
Query: 287 YKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSV--EII 344
+ T + P L +S ++ G APL + D +E ++
Sbjct: 241 ARATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPL---LADTHREWSAXTGHAVL 297
Query: 345 QGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGP 404
+ YG+TE S+ D + G+VG + A+V DP TG L G + + GP
Sbjct: 298 ERYGMTETNMNTSNPYDGDRVP--GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGP 355
Query: 405 TIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELE 464
+ GY + T +G+ TGDL D G++ I+ R +L+ + + P E+E
Sbjct: 356 NVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIE 415
Query: 465 HLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRV 524
+ + P + ++AVI P + G+ AFVV + +EAQ++ + Q+A + V
Sbjct: 416 SEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXV 475
Query: 525 AFVNSIPKSEAGKI 538
FV+ +P++ G +
Sbjct: 476 IFVDDLPRNTMGAV 489
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 111/488 (22%), Positives = 207/488 (42%), Gaps = 54/488 (11%)
Query: 90 YSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFAT 149
+ + K D + S ++ L LG + PA + T +I +++ K +
Sbjct: 106 HGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRI--EKAGLKMIV 163
Query: 150 SRTSHKLPPNIRTVLVDSPE---------------FLSLLSTQNQNDVVISPP---AVVN 191
+P + + + ++ ++ + P
Sbjct: 164 CIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTK 223
Query: 192 QSDAAVLLYSSGTTGKVKGVLLTHRNIISL-----VASFHHVEYGANPAEPQPSGEVSLI 246
D ++ +SSGT G K ++ H N L + +VE SG +
Sbjct: 224 NEDICLVYFSSGTAGFPK--MVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCV 281
Query: 247 TLPLFHVFGFLALVRVVAVSETAVFM---ERFDFETMLKTVDKYKLTSMPVSPPLVVALT 303
L+ + ++ AVF+ +RF+ + ML+ KY +T+ P + L
Sbjct: 282 WGKLYGQW----------IAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLI 331
Query: 304 KSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSE 363
K +L+ Y+ S+L+Y G PL EV ++F E F +++++G+G TE ++ E
Sbjct: 332 KEDLSH-YNFSTLKYAVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTETVVTIATFPWME 389
Query: 364 ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLR----GPTIMKGYIGDNKATIE 419
+ GS+G+ + +++D G ++GE+ + P + + G + E
Sbjct: 390 --PKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTE 446
Query: 420 TVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVI 479
+G+ TGD+ + D +G+L+ V R ++IK Y++ P E+E L +P + + A+
Sbjct: 447 ETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAIT 506
Query: 480 PYPDEEAGQIPMAFVV----RKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEA 535
PD GQ+ A +V P S+ +L D + APYK R + FV +PK+ +
Sbjct: 507 GVPDPVRGQVIKATIVLTKDYTPSDSLKN-ELQDHVKNVTAPYKYPRIIEFVPELPKTIS 565
Query: 536 GKILRREL 543
GKI R E+
Sbjct: 566 GKIRRVEI 573
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 127/499 (25%), Positives = 227/499 (45%), Gaps = 33/499 (6%)
Query: 65 ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP 124
A G RLT+ E + ++ L + VA +++P+S ++ + +L LG V +
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILALHRLGAVPAL 83
Query: 125 ANPLGSTSEISHQLHLSKPSIA-FATSRTSHKLPPNIRTVLVDSPE-----FLSLLSTQN 178
NP ++E++ + + + A A R + + S FL L ++
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSGARIIFLGDL-VRD 135
Query: 179 QNDVVISPPAVVNQSDAA---VLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPA 235
PP Q + A + Y+SGTTG K ++ R S V F + G
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FMSTQVGLRHG 194
Query: 236 EPQPSGEVSLITLPLFHVFGFLA-LVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPV 294
V L +PL+HV GF A LV +A+ T V +E F L+ V + ++TS+
Sbjct: 195 RHN----VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFA 250
Query: 295 SPPLVVALTKSELT--KKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352
+P + AL + L SL++++ GA + V + + P E + GYG TE
Sbjct: 251 TPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNGYGTTEA 309
Query: 353 GGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGP-TIMKGYI 411
+ S +T + G E+ ++ V + ++ ++GEL + + GY+
Sbjct: 310 --MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVD-EIVANGEEGELIVAASDSAFVGYL 366
Query: 412 GDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
+AT E + +GW +T D+ + G + I+ R+ ++I I P+E+E +L + P
Sbjct: 367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAP 425
Query: 472 EIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFI-AKQVAPYKKIRRVAFVNSI 530
+ + VI D+ GQ A VV + G +++ L F + ++A +K+ +R ++ +
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQL 485
Query: 531 PKSEAGKILRRELVNHALS 549
PK+ K+LRR+LV S
Sbjct: 486 PKNALNKVLRRQLVQQVSS 504
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 123/508 (24%), Positives = 217/508 (42%), Gaps = 42/508 (8%)
Query: 70 LTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLG 129
+Y E + + L QK + + D + P+ E + F+L LG + A P
Sbjct: 51 WSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSH 109
Query: 130 STSEISHQLHLSKPSIAF-----------ATSRTSHKLPPNIRTVLV--DSPEFLSLLST 176
+SEI++ ++ + + +R P ++ ++V ++ EFL L
Sbjct: 110 RSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPL--- 166
Query: 177 QNQNDVVISPPAV--VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANP 234
D+ P + V SD A L S G+TG K + TH + I + V + +
Sbjct: 167 ---EDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHS 223
Query: 235 AEPQPSGEVSLITLPLFHVFGFLA--LVRVVAVSETAVFMERFDFETMLKTVDKYKLTSM 292
V L LP H + + ++ V+ V + +++ K+T
Sbjct: 224 T-------VYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTIT 276
Query: 293 PVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352
+ PPL + +++ DLSSLQ L GGA E + K F + Q +G E
Sbjct: 277 ALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGXAE- 334
Query: 353 GGLASSMR--DSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGY 410
GL + R D EE + E++V D D + P + G L RGP ++GY
Sbjct: 335 -GLVNYTRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRD-VKPGETGHLLTRGPYTIRGY 392
Query: 411 IGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSN 470
+ + +G+ +TGD+ +G++ + R K+ I ++ E+E+ L ++
Sbjct: 393 YKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAH 452
Query: 471 PEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQ-VAPYKKIRRVAFVNS 529
P + DAA + PD+ G+ F++ + + A+L F+ ++ +A YK RV FV S
Sbjct: 453 PAVHDAAXVSXPDQFLGERSCVFIIPR-DEAPKAAELKAFLRERGLAAYKIPDRVEFVES 511
Query: 530 IPKSEAGKILR---RELVNHALSGNLSK 554
P++ GK+ + RE ++ L K
Sbjct: 512 FPQTGVGKVSKKALREAISEKLLAGFKK 539
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 118/497 (23%), Positives = 201/497 (40%), Gaps = 45/497 (9%)
Query: 62 MNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVV 121
+ A G ++Y E + + + L L D + S E VLY + + G V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 122 VSPANPLGSTSEISHQLHLSKPSIAFA--------------TSRTSHKLPPNIRTVLVDS 167
P N + E+ + + ++P I T L P+ R L D+
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDA 139
Query: 168 PEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHH 227
S D A +LY+SGTTG+ G +L+H N+ S S
Sbjct: 140 AAGASEAFATIDR----------GADDLAAILYTSGTTGRSXGAMLSHDNLAS--NSLTL 187
Query: 228 VEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSE-TAVFMERFDFETMLKTVDK 286
V+Y + +V + LP++H G V + + +F+ FD + +L +
Sbjct: 188 VDYWRFTPD-----DVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLM-- 240
Query: 287 YKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSV--EII 344
+ T + P L +S ++ G APL + D +E ++
Sbjct: 241 ARATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPL---LADTHREWSAXTGHAVL 297
Query: 345 QGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGP 404
+ YG+TE S+ D + G+VG + A+V DP TG L G + + GP
Sbjct: 298 ERYGMTETNMNTSNPYDGDRVP--GAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGP 355
Query: 405 TIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELE 464
+ GY + T +G+ TGDL D G++ I+ R +L+ + + P E+E
Sbjct: 356 NVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIE 415
Query: 465 HLLQSNPEIADAAVIPYPDEEAGQIPMAFVV---RKPGSSINEAQLMDFIAKQVAPYKKI 521
+ + P + ++AVI P + G+ AFVV S I +L F+ ++A +
Sbjct: 416 SEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMP 475
Query: 522 RRVAFVNSIPKSEAGKI 538
V FV+ +P++ G +
Sbjct: 476 XXVIFVDDLPRNTMGAV 492
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 123/538 (22%), Positives = 234/538 (43%), Gaps = 55/538 (10%)
Query: 67 GRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPAN 126
G +TY E L + + L + K D + P E + ++ +G + S
Sbjct: 111 GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVF 170
Query: 127 PLGSTSEISHQLHLSKPSIAFATSRTSH---------------KLPPNIRTVLV------ 165
S++ + +++ + T ++ + P +R VLV
Sbjct: 171 AGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNN 230
Query: 166 -----DSPEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIIS 220
+P L +T+ + P V+ D LLY+SG+TG KGV H
Sbjct: 231 PSVAFHAPRDLDW-ATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGV--QHSTAGY 287
Query: 221 LVASFHHVEYGANPAEPQ---PSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDF 277
L+ + + Y + + +G++ IT + V+G L V E ++
Sbjct: 288 LLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYP--NY 345
Query: 278 ETMLKTVDKYKLTSMPVSPPLVVALTKS--ELTKKYDLSSLQYLSCGGAPLGKEVTDKFK 335
+D++K+T V+P + L ++ + + L SL+ L G P+ EV + +
Sbjct: 346 SRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYS 405
Query: 336 EKFPSVEI--IQGYGLTECGG-LASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALS 392
EK EI + Y TE G L + + + GS ++A V+DP TG+ L+
Sbjct: 406 EKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELN 465
Query: 393 PAQ-KGELWLRG--PTIMKGYIGDNKATIETVDSE--GWLKTGDLCYFDSNGFLFIVDRL 447
+ +G L ++ P+ + ++ ++T + G+ TGD D +G+++I+ R+
Sbjct: 466 TSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRV 525
Query: 448 KELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEA-- 505
+++ +++ AE+E + +P +A+ AV+ + D+ GQ AFVV K SS + A
Sbjct: 526 DDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATD 585
Query: 506 -QLMDF-------IAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSGNLSKL 555
+L D + K + P+ + + V+ +PK+ +GKI+RR ++ L+G +L
Sbjct: 586 DELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRR-ILRKILAGESDQL 642
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 126/499 (25%), Positives = 226/499 (45%), Gaps = 33/499 (6%)
Query: 65 ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP 124
A G RLT+ E + ++ L + VA +++P+S ++ + +L LG V +
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILALHRLGAVPAL 83
Query: 125 ANPLGSTSEISHQLHLSKPSIA-FATSRTSHKLPPNIRTVLVDSPE-----FLSLLSTQN 178
NP ++E++ + + + A A R + + S FL L ++
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSGARIIFLGDL-VRD 135
Query: 179 QNDVVISPPAVVNQSDAA---VLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPA 235
PP Q + A + Y+SGTTG K ++ R S V F + G
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FMSTQVGLRHG 194
Query: 236 EPQPSGEVSLITLPLFHVFGFLA-LVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPV 294
V L +PL+HV GF A LV +A+ T V +E F L+ V + ++TS+
Sbjct: 195 RHN----VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFA 250
Query: 295 SPPLVVALTKSELT--KKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352
+P + AL + L SL++++ GA + V + + P E + YG TE
Sbjct: 251 TPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNAYGTTEA 309
Query: 353 GGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGP-TIMKGYI 411
+ S +T + G E+ ++ V + ++ ++GEL + + GY+
Sbjct: 310 --MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVD-EIVANGEEGELIVAASDSAFVGYL 366
Query: 412 GDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
+AT E + +GW +T D+ + G + I+ R+ ++I I P+E+E +L + P
Sbjct: 367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAP 425
Query: 472 EIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFI-AKQVAPYKKIRRVAFVNSI 530
+ + VI D+ GQ A VV + G +++ L F + ++A +K+ +R ++ +
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQL 485
Query: 531 PKSEAGKILRRELVNHALS 549
PK+ K+LRR+LV S
Sbjct: 486 PKNALNKVLRRQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/499 (25%), Positives = 226/499 (45%), Gaps = 33/499 (6%)
Query: 65 ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP 124
A G RLT+ E + ++ L + VA +++P+S ++ + +L LG V +
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILALHRLGAVPAL 83
Query: 125 ANPLGSTSEISHQLHLSKPSIA-FATSRTSHKLPPNIRTVLVDSPE-----FLSLLSTQN 178
NP ++E++ + + + A A R + + S FL L ++
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSGARIIFLGDL-VRD 135
Query: 179 QNDVVISPPAVVNQSDAA---VLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPA 235
PP Q + A + Y+SGTTG K ++ R S V F + G
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FMSTQVGLRHG 194
Query: 236 EPQPSGEVSLITLPLFHVFGFLA-LVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPV 294
V L +PL+HV GF A LV +A+ T V +E F L+ V + ++TS+
Sbjct: 195 RHN----VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFA 250
Query: 295 SPPLVVALTKSELT--KKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352
+P + AL + L SL++++ GA + V + + P E + YG TE
Sbjct: 251 TPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEA 309
Query: 353 GGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGP-TIMKGYI 411
+ S +T + G E+ ++ V + ++ ++GEL + + GY+
Sbjct: 310 --MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVD-EIVANGEEGELIVAASDSAFVGYL 366
Query: 412 GDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
+AT E + +GW +T D+ + G + I+ R+ ++I I P+E+E +L + P
Sbjct: 367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAP 425
Query: 472 EIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFI-AKQVAPYKKIRRVAFVNSI 530
+ + VI D+ GQ A VV + G +++ L F + ++A +K+ +R ++ +
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQL 485
Query: 531 PKSEAGKILRRELVNHALS 549
PK+ K+LRR+LV S
Sbjct: 486 PKNALNKVLRRQLVQQVSS 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/499 (25%), Positives = 226/499 (45%), Gaps = 33/499 (6%)
Query: 65 ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP 124
A G RLT+ E + ++ L + VA +++P+S ++ + +L LG V +
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILALHRLGAVPAL 83
Query: 125 ANPLGSTSEISHQLHLSKPSIA-FATSRTSHKLPPNIRTVLVDSPE-----FLSLLSTQN 178
NP ++E++ + + + A A R + + S FL L ++
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSGARIIFLGDL-VRD 135
Query: 179 QNDVVISPPAVVNQSDAA---VLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPA 235
PP Q + A + Y+SGTTG K ++ R S V F + G
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FMSTQVGLRHG 194
Query: 236 EPQPSGEVSLITLPLFHVFGFLA-LVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPV 294
V L +PL+HV GF A LV +A+ T V +E F L+ V + ++TS+
Sbjct: 195 RHN----VVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFA 250
Query: 295 SPPLVVALTKSELT--KKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352
+P + AL + L SL++++ GA + V + + P E + YG TE
Sbjct: 251 TPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEA 309
Query: 353 GGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGP-TIMKGYI 411
+ S +T + G E+ ++ V + ++ ++GEL + + GY+
Sbjct: 310 --MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVD-EIVANGEEGELIVAASDSAFVGYL 366
Query: 412 GDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
+AT E + +GW +T D+ + G + I+ R+ ++I I P+E+E +L + P
Sbjct: 367 NQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAP 425
Query: 472 EIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFI-AKQVAPYKKIRRVAFVNSI 530
+ + VI D+ GQ A VV + G +++ L F + ++A +K+ +R ++ +
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQL 485
Query: 531 PKSEAGKILRRELVNHALS 549
PK+ K+LRR+LV S
Sbjct: 486 PKNALNKVLRRQLVQQVSS 504
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/499 (25%), Positives = 226/499 (45%), Gaps = 33/499 (6%)
Query: 65 ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP 124
A G RLT+ E + ++ L + VA +++P+S ++ + +L LG V +
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILALHRLGAVPAL 83
Query: 125 ANPLGSTSEISHQLHLSKPSIA-FATSRTSHKLPPNIRTVLVDSPE-----FLSLLSTQN 178
NP ++E++ + + + A A R + + S FL L ++
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSGARIIFLGDL-VRD 135
Query: 179 QNDVVISPPAVVNQSDAA---VLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPA 235
PP Q + A + Y+SGTTG K ++ R S V F + G
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FMSTQVGLRHG 194
Query: 236 EPQPSGEVSLITLPLFHVFGFLA-LVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPV 294
V L +PL+HV GF A LV +A+ T V +E F L+ V + ++TS+
Sbjct: 195 RHN----VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFA 250
Query: 295 SPPLVVALTKSELT--KKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352
+P + AL + L SL++++ GA + V + + P E + YG TE
Sbjct: 251 TPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEA 309
Query: 353 GGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGP-TIMKGYI 411
+ S +T + G E+ ++ V + ++ ++GEL + + GY+
Sbjct: 310 --MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVD-EIVANGEEGELIVAASDSAFVGYL 366
Query: 412 GDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
+AT E + +GW +T D+ + G + I+ R+ ++I I P+E+E +L + P
Sbjct: 367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAP 425
Query: 472 EIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFI-AKQVAPYKKIRRVAFVNSI 530
+ + VI D+ GQ A VV + G +++ L F + ++A +K+ +R ++ +
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQL 485
Query: 531 PKSEAGKILRRELVNHALS 549
PK+ K+LRR+LV S
Sbjct: 486 PKNALNKVLRRQLVQQVSS 504
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 169/391 (43%), Gaps = 29/391 (7%)
Query: 65 ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP 124
+T R+TY + N L ++K D +L P+S E L++ LG V P
Sbjct: 25 STDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP 83
Query: 125 ANPLGSTSEISHQLHLS--------KPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLST 176
N + E+S L S PS + + PP T + + L +
Sbjct: 84 INTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRS 143
Query: 177 QNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAE 236
++ P D ++Y+SGTTG KGV+ TH ++ S +S+ A+ +
Sbjct: 144 AAADE----PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSW------ASTID 193
Query: 237 PQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSP 296
+ + L+ LP+FHV ++ T + M +FD + + + ++ P
Sbjct: 194 VRYRDRL-LLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVP 252
Query: 297 PLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLA 356
++ + + + D +Y GGAP+ + + + K ++E++QGY LTE G
Sbjct: 253 AILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGG 310
Query: 357 SSMRDSEETKRHGSVGRLHELMEAKVVDPVTGD--ALSPAQKGELWLRGPTIMKGYIGDN 414
+ + + ++ GS GR + V GD + +GE+ ++ ++K Y
Sbjct: 311 TLLLSEDALRKAGSAGRATMFTDVA----VRGDDGVIREHGEGEVVIKSDILLKEYWNRP 366
Query: 415 KATIETVDSEGWLKTGDLCYFDSNGFLFIVD 445
+AT + D+ GW +TGD+ D G+L+I D
Sbjct: 367 EATRDAFDN-GWFRTGDIGEIDDEGYLYIKD 396
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 126/499 (25%), Positives = 222/499 (44%), Gaps = 33/499 (6%)
Query: 65 ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP 124
A G RLT+ E + ++ L + VA +++P+S ++ + +L LG V +
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILALHRLGAVPAL 83
Query: 125 ANPLGSTSEISHQLHLSKPSIA-FATSRTSHKLPPNIRTVLVDSPE-----FLSLLSTQN 178
NP ++E++ + + + A A R + + S FL L ++
Sbjct: 84 LNPRLKSAELAELIKRGEXTAAVIAVGR-------QVADAIFQSGSGARIIFLGDL-VRD 135
Query: 179 QNDVVISPPAVVNQSDAA---VLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPA 235
PP Q + A + Y+SGTTG K ++ R S V F + G
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FXSTQVGLRHG 194
Query: 236 EPQPSGEVSLITLPLFHVFGFLA-LVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPV 294
V L PL+HV GF A LV +A+ T V +E F L+ V + ++TS+
Sbjct: 195 RHN----VVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFA 250
Query: 295 SPPLVVALTKSELT--KKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352
+P + AL + L SL++++ GA V + + P E + YG TE
Sbjct: 251 TPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPG-EKVNIYGTTEA 309
Query: 353 GGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGP-TIMKGYI 411
S +T + G E+ ++ V + ++ ++GEL + + GY+
Sbjct: 310 XN--SLYXRQPKTGTEXAPGFFSEVRIVRIGGGVD-EIVANGEEGELIVAASDSAFVGYL 366
Query: 412 GDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
+AT E + +GW +T D+ + G + I+ R+ + I I P+E+E +L + P
Sbjct: 367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAP 425
Query: 472 EIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFI-AKQVAPYKKIRRVAFVNSI 530
+ + VI D+ GQ A VV + G +++ L F + ++A +K+ +R ++ +
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQL 485
Query: 531 PKSEAGKILRRELVNHALS 549
PK+ K+LRR+LV S
Sbjct: 486 PKNALNKVLRRQLVQQVSS 504
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 180/438 (41%), Gaps = 60/438 (13%)
Query: 91 SLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP-ANP--LGSTSEISHQLHLSKPSIAF 147
+L K D +++ +S E +F+ G+V P A P +G S +L S
Sbjct: 69 NLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSWSAKLQGLLASCQP 128
Query: 148 ATSRTSHKLPPNIRTVLVDSPEFLSL----LSTQNQNDVVISPPAVVNQSDAAVLLYSSG 203
A T + P + D+PE L + DV + P +D A L Y+SG
Sbjct: 129 AAIITGDEWLPLVNAATHDNPELHVLSHAWFKALPEADVALQRPV---PNDIAYLQYTSG 185
Query: 204 TTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLA-LVRV 262
+T +GV++THR + + + + H P G+ + LP +H G + L+
Sbjct: 186 STRFPRGVIITHREVXANLRAISHDGIKLRP------GDRCVSWLPFYHDXGLVGFLLTP 239
Query: 263 VAVSETAVFMERFDFET----MLKTVDKYKLTSMPVSPPLVVALTKSELTKK----YDLS 314
VA + ++ DF LK + K + T + V+PP L + + +K DLS
Sbjct: 240 VATQLSVDYLRTQDFAXRPLQWLKLISKNRGT-VSVAPPFGYELCQRRVNEKDLAELDLS 298
Query: 315 SLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQ-----GYGLTECGGLASSMRDSEETKRHG 369
+ G P+ E +F E F V YGL E LA S D
Sbjct: 299 CWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAE-NALAVSFSDEASGVVVN 357
Query: 370 SVGRLHELMEAKVVDP-----------------------VTGDALSPAQK---GELWLRG 403
V R + K V P + +A P + G + + G
Sbjct: 358 EVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGXPVAERVVGHICISG 417
Query: 404 PTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAEL 463
P++ GY GD + + + + + GWL TGDL Y +G+L++ R+K+LI + I P ++
Sbjct: 418 PSLXSGYFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDI 475
Query: 464 EHLLQSNPEIADAAVIPY 481
E++ + PEI I +
Sbjct: 476 EYIAEQEPEIHSGDAIAF 493
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 165/358 (46%), Gaps = 21/358 (5%)
Query: 193 SDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFH 252
D A LYSSG+TGK KG + TH N+ + E A P +V LF
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANL------YWTAELYAKPILGIAENDVVFSAAKLFF 236
Query: 253 VFGFL-ALVRVVAVSETAVFM-ERFDFETMLKTVDKYKLTSMPVSPPLVV-ALTKSELTK 309
+G L ++V TA+ M ER + + + +++ T P L L L
Sbjct: 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA 296
Query: 310 KYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHG 369
+ D++ ++ + G L +E+ ++F F EI+ G G TE L + + +G
Sbjct: 297 RADVA-IRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEM--LHIFLSNRAGAVEYG 352
Query: 370 SVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKT 429
+ GR E ++ D G A+ + G+L+++GP+ Y + + + T E W+++
Sbjct: 353 TTGRPVPGYEIELRDE-AGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRS 410
Query: 430 GDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQI 489
GD NG R +++K + P E+E +L + + +AAV+ + G +
Sbjct: 411 GDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV--DHGGLV 468
Query: 490 PM-AFVVRK---PGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRREL 543
AFVV K S I +L F+ ++AP+K R + FV+ +PK+ GKI R +L
Sbjct: 469 KTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKL 526
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/480 (22%), Positives = 205/480 (42%), Gaps = 47/480 (9%)
Query: 92 LSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSR 151
L + D ++ P E ++ + G++ P +++I ++L +SK A
Sbjct: 96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDE 155
Query: 152 TSHKLPPNIRTVLVDSPEF-LSLLSTQNQNDVVISPPAVVNQS------------DAAVL 198
+ + TV + P + LL ++ D ++ ++N++ +A+ +
Sbjct: 156 VIQE----VDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAI 211
Query: 199 LYSSGTTGKVKGVLLTHRNI---ISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFG 255
++SGT+G K ++ ++ + A + ++ +G + I L +
Sbjct: 212 YFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWA 271
Query: 256 FLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSS 315
A V + +FD +LKT+ Y + SM +P + L + +L+ Y
Sbjct: 272 LGACTFVH-------LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSS-YKFPH 323
Query: 316 LQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLH 375
LQ G L E + ++ + ++I + YG TE G + M + G +G
Sbjct: 324 LQNCVTVGESLLPETLENWRAQ-TGLDIRESYGQTETG--LTCMVSKTMKIKPGYMGTAA 380
Query: 376 ELMEAKVVDPVTGDALSPAQKGELWLRGP-----TIMKGYIGDNKATIETVDSEGWLKTG 430
+ +++D G+ L P +G++ +R I GY+ + T + + WL G
Sbjct: 381 SCYDVQIIDD-KGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LG 438
Query: 431 DLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIP 490
D D +G+ + R ++I Y+I P+E+E+ L +P + + AVI PD G++
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
Query: 491 MAFVV-------RKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRREL 543
AFVV P E Q + APYK R++ FV ++PK+ GKI R +L
Sbjct: 499 KAFVVLASQFLSHDPEQLTKELQ--QHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKL 556
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/480 (22%), Positives = 205/480 (42%), Gaps = 47/480 (9%)
Query: 92 LSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSR 151
L + D ++ P E ++ + G++ P +++I ++L +SK A
Sbjct: 96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDE 155
Query: 152 TSHKLPPNIRTVLVDSPEF-LSLLSTQNQNDVVISPPAVVNQS------------DAAVL 198
+ + TV + P + LL ++ D ++ ++N++ +A+ +
Sbjct: 156 VIQE----VDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAI 211
Query: 199 LYSSGTTGKVKGVLLTHRNI---ISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFG 255
++SGT+G K ++ ++ + A + ++ +G + I L +
Sbjct: 212 YFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWA 271
Query: 256 FLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSS 315
A V + +FD +LKT+ Y + SM +P + L + +L+ Y
Sbjct: 272 LGACTFVH-------LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSS-YKFPH 323
Query: 316 LQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLH 375
LQ G L E + ++ + ++I + YG TE G + M + G +G
Sbjct: 324 LQNCVTVGESLLPETLENWRAQ-TGLDIRESYGQTETG--LTCMVSKTMKIKPGYMGTAA 380
Query: 376 ELMEAKVVDPVTGDALSPAQKGELWLRGP-----TIMKGYIGDNKATIETVDSEGWLKTG 430
+ +++D G+ L P +G++ +R I GY+ + T + + WL G
Sbjct: 381 SCYDVQIIDD-KGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LG 438
Query: 431 DLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIP 490
D D +G+ + R ++I Y+I P+E+E+ L +P + + AVI PD G++
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
Query: 491 MAFVV-------RKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRREL 543
AFVV P E Q + APYK R++ FV ++PK+ GKI R +L
Sbjct: 499 KAFVVLASQFLSHDPEQLTKELQ--QHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKL 556
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 100/390 (25%), Positives = 183/390 (46%), Gaps = 34/390 (8%)
Query: 187 PAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAE-PQPSGEVSL 245
P +N D +LY+SG+TGK KGVL T + A+ + +P + + +V
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 246 ITLPLFHVFGFLALVRVVAVSETAVFMERFDFET---MLKTVDKYKLTSMPVSPPLVVAL 302
+T + ++G LA + T +F ++ T M + VDK+++ + +P + AL
Sbjct: 310 VTGHSYLLYGPLA-----CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 303 TK--SELTKKYDLSSLQYLSCGGAPLGKEVTDKF-----KEKFPSVEIIQGYGLTECGGL 355
+ + D SSL+ L G P+ E + + KEK P ++ + TE GG
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCP---VVDTWWQTETGGF 421
Query: 356 ASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGEL-----WLRGPTIMKGY 410
+ + GS R ++ +VD G A +G L W P +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSW---PGQARTL 477
Query: 411 IGDNKATIETVDS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQ 468
GD++ +T S + +GD D +G+ +I R+ +++ +++ AE+E L
Sbjct: 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 537
Query: 469 SNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSIN---EAQLMDFIAKQVAPYKKIRRVA 525
++P+IA+AAV+ P GQ A+V G + A++ +++AK++ P +
Sbjct: 538 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLH 597
Query: 526 FVNSIPKSEAGKILRRELVNHALSGNLSKL 555
+ +S+PK+ +GKI+RR ++ +G+ S L
Sbjct: 598 WTDSLPKTRSGKIMRR-ILRKIAAGDTSNL 626
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 116/512 (22%), Positives = 211/512 (41%), Gaps = 39/512 (7%)
Query: 56 TAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSL 115
T A F + G R TY + R ++S+ + L+K+ V + ++++ + +L
Sbjct: 16 TQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPV-LVFGAQTYDMLATFVAL 74
Query: 116 LSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLS 175
G P + + I + ++KPS+ A + P I + + S LS +
Sbjct: 75 TKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAI----EEFPLTIEGISLVS---LSEIE 127
Query: 176 TQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPA 235
+ ++ V D ++++SGTTG+ KGV ++H N++S P
Sbjct: 128 SAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPK 187
Query: 236 EPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMER---FDFETMLKTVDKYKLTSM 292
+PQ L P + +A+ T + + DF+ + T+ + +
Sbjct: 188 QPQ-----MLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIW 242
Query: 293 PVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352
+P S+ + + +L + G L K E+FPS +II YG TE
Sbjct: 243 TSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEA 302
Query: 353 GGLASSMRDSEETKRHGS---VGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKG 409
S++ + E + + +G ++D G LS ++GE+ + GP + KG
Sbjct: 303 TVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE-DGKELSSGEQGEIIVTGPAVSKG 361
Query: 410 YIGDNKATIE---TVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHL 466
Y+ + + T E T + TGD+ + L RL IKY Y+I ++
Sbjct: 362 YLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQ 421
Query: 467 LQSNPEIADAAVIP-YPDEEAGQIPMAFVVRKPG-----------SSINEAQLMDFIAKQ 514
L +P +A A +P Y E Q +A++V K G + +A + D +
Sbjct: 422 LNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSY 481
Query: 515 VAPYKKIRRVAFVNSIPKSEAGKILRRELVNH 546
+ P K + R +S+P + GKI + L+N
Sbjct: 482 MMPSKFLYR----DSLPLTPNGKIDIKTLINE 509
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 182/390 (46%), Gaps = 34/390 (8%)
Query: 187 PAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAE-PQPSGEVSL 245
P +N D +LY+SG+TGK KGVL T + A+ + +P + + +V
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 246 ITLPLFHVFGFLALVRVVAVSETAVFMERFDFET---MLKTVDKYKLTSMPVSPPLVVAL 302
+T + ++G LA + T +F ++ T M + VDK+++ + +P + AL
Sbjct: 310 VTGHSYLLYGPLA-----CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 303 TK--SELTKKYDLSSLQYLSCGGAPLGKEVTDKF-----KEKFPSVEIIQGYGLTECGGL 355
+ + D SSL+ L G P+ E + + KEK P ++ + TE GG
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCP---VVDTWWQTETGGF 421
Query: 356 ASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGEL-----WLRGPTIMKGY 410
+ + GS R ++ +VD G A +G L W P +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSW---PGQARTL 477
Query: 411 IGDNKATIETVDS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQ 468
GD++ +T S + +GD D +G+ +I R+ +++ +++ AE+E L
Sbjct: 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 537
Query: 469 SNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSIN---EAQLMDFIAKQVAPYKKIRRVA 525
++P+IA+AAV+ P GQ A+V G + A++ +++ K++ P +
Sbjct: 538 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLH 597
Query: 526 FVNSIPKSEAGKILRRELVNHALSGNLSKL 555
+ +S+PK+ +GKI+RR ++ +G+ S L
Sbjct: 598 WTDSLPKTRSGKIMRR-ILRKIAAGDTSNL 626
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 182/390 (46%), Gaps = 34/390 (8%)
Query: 187 PAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAE-PQPSGEVSL 245
P +N D +LY+SG+TGK KGVL T + A+ + +P + + +V
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 246 ITLPLFHVFGFLALVRVVAVSETAVFMERFDFET---MLKTVDKYKLTSMPVSPPLVVAL 302
+T + ++G LA + T +F ++ T M + VDK+++ + +P + AL
Sbjct: 310 VTGHSYLLYGPLA-----CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 303 TK--SELTKKYDLSSLQYLSCGGAPLGKEVTDKF-----KEKFPSVEIIQGYGLTECGGL 355
+ + D SSL+ L G P+ E + + KEK P ++ + TE GG
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCP---VVDTWWQTETGGF 421
Query: 356 ASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGEL-----WLRGPTIMKGY 410
+ + GS R ++ +VD G A +G L W P +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSW---PGQARTL 477
Query: 411 IGDNKATIETVDS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQ 468
GD++ +T S + +GD D +G+ +I R+ +++ +++ AE+E L
Sbjct: 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 537
Query: 469 SNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSIN---EAQLMDFIAKQVAPYKKIRRVA 525
++P+IA+AAV+ P GQ A+V G + A++ +++ K++ P +
Sbjct: 538 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLH 597
Query: 526 FVNSIPKSEAGKILRRELVNHALSGNLSKL 555
+ +S+PK+ +GKI+RR ++ +G+ S L
Sbjct: 598 WTDSLPKTRSGKIMRR-ILRKIAAGDTSNL 626
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 182/390 (46%), Gaps = 34/390 (8%)
Query: 187 PAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAE-PQPSGEVSL 245
P +N D +LY+SG+TGK KGVL T + A+ + +P + + +V
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 246 ITLPLFHVFGFLALVRVVAVSETAVFMERFDFET---MLKTVDKYKLTSMPVSPPLVVAL 302
+T + ++G LA + T +F ++ T M + VDK+++ + +P + AL
Sbjct: 310 VTGHSYLLYGPLA-----CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 303 TK--SELTKKYDLSSLQYLSCGGAPLGKEVTDKF-----KEKFPSVEIIQGYGLTECGGL 355
+ + D SSL+ L G P+ E + + KEK P ++ + TE GG
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCP---VVDTWWQTETGGF 421
Query: 356 ASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGEL-----WLRGPTIMKGY 410
+ + GS R ++ +VD G A +G L W P +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSW---PGQARTL 477
Query: 411 IGDNKATIETVDS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQ 468
GD++ +T S + +GD D +G+ +I R+ +++ +++ AE+E L
Sbjct: 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 537
Query: 469 SNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSIN---EAQLMDFIAKQVAPYKKIRRVA 525
++P+IA+AAV+ P GQ A+V G + A++ +++ K++ P +
Sbjct: 538 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLH 597
Query: 526 FVNSIPKSEAGKILRRELVNHALSGNLSKL 555
+ +S+PK+ +GKI+RR ++ +G+ S L
Sbjct: 598 WTDSLPKTRSGKIMRR-ILRKIAAGDTSNL 626
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 182/390 (46%), Gaps = 34/390 (8%)
Query: 187 PAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAE-PQPSGEVSL 245
P +N D +LY+SG+TGK KGVL T + A+ + +P + + +V
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 246 ITLPLFHVFGFLALVRVVAVSETAVFMERFDFET---MLKTVDKYKLTSMPVSPPLVVAL 302
+T + ++G LA + T +F ++ T M + VDK+++ + +P + AL
Sbjct: 310 VTGHSYLLYGPLA-----CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 303 TK--SELTKKYDLSSLQYLSCGGAPLGKEVTDKF-----KEKFPSVEIIQGYGLTECGGL 355
+ + D SSL+ L G P+ E + + KEK P ++ + TE GG
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCP---VVDTWWQTETGGF 421
Query: 356 ASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGEL-----WLRGPTIMKGY 410
+ + GS R ++ +VD G A +G L W P +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSW---PGQARTL 477
Query: 411 IGDNKATIETVDS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQ 468
GD++ +T S + +GD D +G+ +I R+ +++ +++ AE+E L
Sbjct: 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 537
Query: 469 SNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSIN---EAQLMDFIAKQVAPYKKIRRVA 525
++P+IA+AAV+ P GQ A+V G + A++ +++ K++ P +
Sbjct: 538 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLH 597
Query: 526 FVNSIPKSEAGKILRRELVNHALSGNLSKL 555
+ +S+PK+ +GKI+RR ++ +G+ S L
Sbjct: 598 WTDSLPKTRSGKIMRR-ILRKIAAGDTSNL 626
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 182/390 (46%), Gaps = 34/390 (8%)
Query: 187 PAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAE-PQPSGEVSL 245
P +N D +LY+SG+TGK KGVL T + A+ + +P + + +V
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 246 ITLPLFHVFGFLALVRVVAVSETAVFMERFDFET---MLKTVDKYKLTSMPVSPPLVVAL 302
+T + ++G LA + T +F ++ T M + VDK+++ + +P + AL
Sbjct: 310 VTGHSYLLYGPLA-----CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 303 TK--SELTKKYDLSSLQYLSCGGAPLGKEVTDKF-----KEKFPSVEIIQGYGLTECGGL 355
+ + D SSL+ L G P+ E + + KEK P ++ + TE GG
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCP---VVDTWWQTETGGF 421
Query: 356 ASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGEL-----WLRGPTIMKGY 410
+ + GS R ++ +VD G A +G L W P +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSW---PGQARTL 477
Query: 411 IGDNKATIETVDS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQ 468
GD++ +T S + +GD D +G+ +I R+ +++ +++ AE+E L
Sbjct: 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 537
Query: 469 SNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSIN---EAQLMDFIAKQVAPYKKIRRVA 525
++P+IA+AAV+ P GQ A+V G + A++ +++ K++ P +
Sbjct: 538 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLH 597
Query: 526 FVNSIPKSEAGKILRRELVNHALSGNLSKL 555
+ +S+PK+ +GKI+RR ++ +G+ S L
Sbjct: 598 WTDSLPKTRSGKIMRR-ILRKIAAGDTSNL 626
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 181/390 (46%), Gaps = 34/390 (8%)
Query: 187 PAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAE-PQPSGEVSL 245
P +N D +LY+SG+TGK KGVL T + A+ + +P + + +V
Sbjct: 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW 309
Query: 246 ITLPLFHVFGFLALVRVVAVSETAVFMERFDFET---MLKTVDKYKLTSMPVSPPLVVAL 302
+T + ++G LA + T +F ++ T M + VDK+++ + +P + AL
Sbjct: 310 VTGHSYLLYGPLA-----CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 303 TK--SELTKKYDLSSLQYLSCGGAPLGKEVTDKF-----KEKFPSVEIIQGYGLTECGGL 355
+ + D SSL+ L G P+ E + + KEK P ++ + TE GG
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCP---VVDTWWQTETGGF 421
Query: 356 ASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGEL-----WLRGPTIMKGY 410
+ + GS R ++ +VD G A +G L W P +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSW---PGQARTL 477
Query: 411 IGDNKATIETVDS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQ 468
GD++ +T S + +GD D +G+ +I R+ +++ +++ AE+E L
Sbjct: 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 537
Query: 469 SNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSIN---EAQLMDFIAKQVAPYKKIRRVA 525
++P+IA+AAV+ P GQ A+V G + A++ +++ K++ P +
Sbjct: 538 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLH 597
Query: 526 FVNSIPKSEAGKILRRELVNHALSGNLSKL 555
+ +S+PK+ +G I+RR ++ +G+ S L
Sbjct: 598 WTDSLPKTRSGAIMRR-ILRKIAAGDTSNL 626
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 126/530 (23%), Positives = 215/530 (40%), Gaps = 80/530 (15%)
Query: 68 RRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANP 127
R+L+Y E + ++L SL++ + + A + + E+ + +F+LL LGV +P
Sbjct: 49 RQLSYRELNQAADNLACSLRRQ-GIKPGETALVQLGNVAELYITFFALLKLGV--APVLA 105
Query: 128 LGSTSEISHQLHLSKPSIAFATSRTSHKL-------------PPNIRTVLVDSPEFLSLL 174
L S + S+ A + H L +IR V + L+
Sbjct: 106 LFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVV-----QLLNDS 160
Query: 175 STQNQNDVVISPPAVVNQS-----DAAVLLYSSGTTGKVKGVLLTH-------RNIISLV 222
N D + P + + A S GTTG K + TH R + +
Sbjct: 161 GEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC 220
Query: 223 ASFHHVEYGANPAEPQPSGEVSLITLPLFHVFG---------FLALVRVVAVSETAVFME 273
Y L +P H + FLA VV ++ + +
Sbjct: 221 QFTQQTRY--------------LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATL- 265
Query: 274 RFDFETMLKTVDKYKLTSMPVSPPLVVALTKS--ELTKKYDLSSLQYLSCGGAPLGKEVT 331
++K+++ + PP V ++ E + L+SL+ L GGA L +
Sbjct: 266 ------CFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLA 319
Query: 332 DKFKEKFPSVEIIQGYGLTECGGLASSMR--DSEETKRHGSVGRLHELMEAKVVDPVTGD 389
+ + ++ Q +G+ E GL + R DS E H + E V D G+
Sbjct: 320 ARIPAEI-GCQLQQVFGMAE--GLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGN 375
Query: 390 ALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKE 449
L + G L RGP +GY + D+ G+ +GDL D G++ + R K+
Sbjct: 376 PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435
Query: 450 LIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAF-VVRKPGSSINEAQLM 508
I +I E+E+LL +P + AA++ DE G+ A+ VV++P + Q+
Sbjct: 436 QINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP---LRAVQVR 492
Query: 509 DFIAKQ-VAPYKKIRRVAFVNSIPKSEAGKI----LRRELVNHALSGNLS 553
F+ +Q +A +K RV V+S+P + GK+ LR+ L + A +G S
Sbjct: 493 RFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRAS 542
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 121/501 (24%), Positives = 217/501 (43%), Gaps = 45/501 (8%)
Query: 68 RRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANP 127
R+L+Y E R + +L L + L K D A + P+ E +++F+LL GVVV A
Sbjct: 54 RQLSYIELDRLSTNLATRLAEK-GLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALY 112
Query: 128 LGSTSEISHQLHLSKPSIAFATSRTSHKLPPNIRTV--LVD---SPEFLSLLSTQNQN-- 180
E++ + +P + + + H++ N + + L D SPE + +L+ Q +
Sbjct: 113 SHRQYELNAFIKQIQPKLLIGSRQ--HEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFG 170
Query: 181 --DVVISPPAVVNQ------SDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGA 232
D + +P + A S G+TG K + TH + V + + G
Sbjct: 171 LLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI-CGL 229
Query: 233 NPAEPQPSGEVSLITLPLFHVF-----GFLALVRVVAVSETAVFMERFDFETMLKTVDKY 287
N S L LP H F G L ++ A E + + ++
Sbjct: 230 N------SNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLN---CFSIIQRH 280
Query: 288 KLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGY 347
++ + P V+ + K + SL+ L GGA + + + E + ++ Q +
Sbjct: 281 QVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVF 339
Query: 348 GLTECGGLASSMR-DSEETKRHGSVGR-LHELMEAKVVDPVTGDALSPAQKGELWLRGPT 405
G+ E GL + R D + + + GR + E K+VD + + + G L RGP
Sbjct: 340 GMAE--GLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYRE-VPEGEIGMLATRGPY 396
Query: 406 IMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEH 465
GY + + D + + +GDL +G L +V R+K+ I +I E+E
Sbjct: 397 TFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEK 456
Query: 466 LLQSNPEIADAAVIPYPDEEAGQIPMAFVV-RKP--GSSINEAQLMDFIAKQVAPYKKIR 522
L+ +PE+ AA++ DE+ G+ AF+V R P + + LM+ +A YK
Sbjct: 457 LILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMEL---GIAQYKLPD 513
Query: 523 RVAFVNSIPKSEAGKILRREL 543
++ + S+P + GK+ +++L
Sbjct: 514 QIKLIESLPLTAVGKVDKKQL 534
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 173/398 (43%), Gaps = 33/398 (8%)
Query: 171 LSLLSTQNQNDVVIS-------PPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVA 223
+ ++S N D+ + P V + ++Y+SG+TG KGV +T+ ++S
Sbjct: 115 VRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFT- 173
Query: 224 SFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMER------FDF 277
++ Q +G+V L P + + + T +++ D
Sbjct: 174 -----KWAVEDFNLQ-TGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDL 227
Query: 278 ETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEK 337
L+ D TS P + L ++ ++ + +L CG L EV K E+
Sbjct: 228 FASLEQSDIQVWTSTPSFAEM--CLMEASFSESMLPNMKTFLFCGEV-LPNEVARKLIER 284
Query: 338 FPSVEIIQGYGLTECGGLASSMRDSEET-KRHGSVGRLHELMEAKVVDPVTGDALSP-AQ 395
FP I+ YG TE + + +EE ++ S+ + + +++ ++P +
Sbjct: 285 FPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGE 344
Query: 396 KGELWLRGPTIMKGYIGDNKAT---IETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIK 452
KGE+ + GP++ GY+G + T +D E KTGD Y + NG LF RL IK
Sbjct: 345 KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIK 403
Query: 453 YKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIA 512
Y++ E+EH L++ + A ++P E +A VV S E +L I
Sbjct: 404 LHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIK 463
Query: 513 KQVAP----YKKIRRVAFVNSIPKSEAGKILRRELVNH 546
K++ Y R+ + +SIP + GK+ R++L++
Sbjct: 464 KELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 173/398 (43%), Gaps = 33/398 (8%)
Query: 171 LSLLSTQNQNDVVIS-------PPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVA 223
+ ++S N D+ + P V + ++Y+SG+TG KGV +T+ ++S
Sbjct: 115 VRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFT- 173
Query: 224 SFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERF------DF 277
++ Q +G+V L P + + + T +++ D
Sbjct: 174 -----KWAVEDFNLQ-TGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDL 227
Query: 278 ETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEK 337
L+ D TS P + L ++ ++ + +L CG L EV K E+
Sbjct: 228 FASLEQSDIQVWTSTPSFAEM--CLMEASFSESMLPNMKTFLFCGEV-LPNEVARKLIER 284
Query: 338 FPSVEIIQGYGLTECGGLASSMRDSEET-KRHGSVGRLHELMEAKVVDPVTGDALSP-AQ 395
FP I+ YG TE + + +EE ++ S+ + + +++ ++P +
Sbjct: 285 FPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGE 344
Query: 396 KGELWLRGPTIMKGYIGDNKAT---IETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIK 452
KGE+ + GP++ GY+G + T +D E KTGD Y + NG LF RL IK
Sbjct: 345 KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIK 403
Query: 453 YKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIA 512
Y++ E+EH L++ + A ++P E +A VV S E +L I
Sbjct: 404 LHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIK 463
Query: 513 KQVAP----YKKIRRVAFVNSIPKSEAGKILRRELVNH 546
K++ Y R+ + +SIP + GK+ R++L++
Sbjct: 464 KELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 117/499 (23%), Positives = 203/499 (40%), Gaps = 51/499 (10%)
Query: 66 TGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPA 125
+G+ L+Y E + N + LQKH K V + + S E+ + +L G P
Sbjct: 486 SGQTLSYRELDEEANRIARRLQKH-GAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPV 544
Query: 126 NPLGSTSEISHQLHLSKPSIAFATSRTSHK---LPPNIRTVLVDSPEFLSLLSTQNQNDV 182
+P IS+ L S + + LP T+ +D Q + +
Sbjct: 545 DPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDD---------QTRFEE 595
Query: 183 VISPPAV-VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSG 241
S PA ++ +D A ++Y+SGTTGK KG + TH NI LV HV+Y A S
Sbjct: 596 QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVK---HVDYMAF------SD 646
Query: 242 EVSLITLP--LFHVFGF------LALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMP 293
+ + +++ F F F L R++ E + D E + + + + M
Sbjct: 647 QDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTL----LDTERLTDLILQENVNVMF 702
Query: 294 VSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECG 353
+ L LT + + + L+ + GG K ++I YG TE
Sbjct: 703 ATTALFNLLTDA---GEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGT 759
Query: 354 GLASS--MRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSP-AQKGELWLRGPTIMKGY 410
A++ + D ++ +G+ + A V L P GEL + G + KGY
Sbjct: 760 VFATAHVVHDLPDSISSLPIGK--PISNASVYILNEQSQLQPFGAVGELCISGMGVSKGY 817
Query: 411 IGDNKATIETV------DSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELE 464
+ T E E +TGDL + +G + R+ + +K + ++I E+E
Sbjct: 818 VNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIE 877
Query: 465 HLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRV 524
LQ P + DA V+ E A++V + + ++ + + KQ+ Y +
Sbjct: 878 KQLQEYPGVKDAVVVADRHESGDASINAYLVNR--TQLSAEDVKAHLKKQLPAYMVPQTF 935
Query: 525 AFVNSIPKSEAGKILRREL 543
F++ +P + GK+ +R L
Sbjct: 936 TFLDELPLTTNGKVNKRLL 954
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 161/359 (44%), Gaps = 25/359 (6%)
Query: 193 SDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFH 252
+D A ++Y+SGTTG KG +L H+ I +L F E N E G+ + I+
Sbjct: 182 TDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFF---ENSLNVTEKDRIGQFASISFDASV 238
Query: 253 VFGFLALVRVVAVSETAVFMERF-DFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKY 311
F+AL + S + + DF + +++ ++T + + P VV L +
Sbjct: 239 WEMFMAL--LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERIL--- 293
Query: 312 DLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHGS- 370
S+Q L G+ + +K+KEK V I YG TE A++ ++ET H
Sbjct: 294 ---SIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVP 347
Query: 371 VGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIET------VDSE 424
+G + + +VD S + GEL + G + +GY + T + V E
Sbjct: 348 IGAPIQNTQIYIVDE-NLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGE 406
Query: 425 GWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDE 484
KTGD + S+G + + R+ +K + +++ E+E +L + I++ AV + D
Sbjct: 407 KLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDH 466
Query: 485 EAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRREL 543
+ A+ V + I QL F ++++ Y ++ +P + GKI R++L
Sbjct: 467 QEQPYLCAYFVSE--KHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 155/378 (41%), Gaps = 43/378 (11%)
Query: 190 VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLP 249
V D A ++++SG+TG+ KGV+ HR + + +G + EV L P
Sbjct: 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPD--------EVFLQCSP 262
Query: 250 L-FHVFGFLALVRVVAVSETAVFM--ERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSE 306
+ + FG L L + V + D + + V ++ +T + +S L L E
Sbjct: 263 VSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLV-DE 320
Query: 307 LTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETK 366
+ + ++ ++Y GG P K + P++ + GYG E G T
Sbjct: 321 VPEAFE--GVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGF---------TT 369
Query: 367 RHGSVGRLHELMEAKVVDPVTG-------DALSPAQKG---ELWLRGPTIMKGYIGDNKA 416
H V + P+ G D L PA G EL++ G + GY+
Sbjct: 370 HHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPAL 429
Query: 417 TIETV--------DSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQ 468
T E E +TGDL ++G L V R + +K + +++ P E+E L
Sbjct: 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV 489
Query: 469 SNPEIADAAVIPYPDEEAGQIPMAFVV-RKPGSSINEAQLMDFIAKQVAPYKKIRRVAFV 527
+P + AAV+ + +A+VV + + + A+L +A+ + Y V
Sbjct: 490 GHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPV 549
Query: 528 NSIPKSEAGKILRRELVN 545
+ +P++ GK+ RR L
Sbjct: 550 DELPRTPNGKLDRRALTG 567
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 118/501 (23%), Positives = 205/501 (40%), Gaps = 37/501 (7%)
Query: 65 ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSP 124
+ G+ LTY E Q++ ++QK S K + + V + + G P
Sbjct: 22 SQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81
Query: 125 ANPLGSTSEISHQLHLSKPSIAF-ATSRTSHKLPPNIRTVLVDSPEFLSLLSTQNQNDVV 183
+ + I+ + S + A + + I+TV + LL + +
Sbjct: 82 VDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEE-----LLENEGGS--- 133
Query: 184 ISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISL---VASFHHVEYGANPAEPQP- 239
+S V + + ++Y+SG+TG KGV ++ N+ S + + V G P
Sbjct: 134 VSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPF 193
Query: 240 SGEVSLITL-PLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPL 298
S ++S++ L P G L V AV++ V E + K L +P
Sbjct: 194 SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEE---------LKKSGLNVWTSTPSF 244
Query: 299 V-VALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLAS 357
V + L ++ + ++ CG L V E+FP +I YG TE +
Sbjct: 245 VQMCLMDPGFSQDLLPHADTFMFCGEV-LPVSVAKALLERFPKAKIFNTYGPTEATVAVT 303
Query: 358 SMRDSEETKRHGS---VGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDN 414
S+ + + VG M ++D G L +KGE+ + GP++ +GY+G+
Sbjct: 304 SVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEIVIAGPSVSRGYLGEP 362
Query: 415 KATIETVDS-EG-W-LKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
+ T + S EG W +TGD F +G +F RL IK Y++ E+E ++ +
Sbjct: 363 ELTEKAFFSHEGQWAYRTGD-AGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQ 421
Query: 472 EIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVA----PYKKIRRVAFV 527
+ A VIPY + +A +V + E QL I K++A Y R+ +
Sbjct: 422 YVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQ 481
Query: 528 NSIPKSEAGKILRRELVNHAL 548
+ I + GKI R+ + L
Sbjct: 482 DHIQMTANGKIDRKRIGEEVL 502
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/463 (22%), Positives = 177/463 (38%), Gaps = 65/463 (14%)
Query: 61 LMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVL--YFSLLSL 118
+N TY + + ++ +LQ + + V + +P +P++ + L
Sbjct: 32 FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG---LPLIQAFLGCLYA 88
Query: 119 GVVVSPANPLGSTSEISHQLHL---SKPSIAFATSRTSHKLPPNIRTVLVDSPEFLSL-- 173
G + P P + + SKP I + K + L +P+FL +
Sbjct: 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTAD---ELNTNPKFLKIPA 145
Query: 174 --LSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIIS----LVASFHH 227
L + N P + +D A L Y+SG+T KGV ++H N++ + SFH
Sbjct: 146 IALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHX 205
Query: 228 VEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKY 287
+ + P + LI L ++G + + S F++ + + LK + KY
Sbjct: 206 NDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFS----FLQ--NPLSWLKHITKY 259
Query: 288 KLT---SMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEII 344
K T S + V + E + DLSS G P+ +E + F + F
Sbjct: 260 KATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFR 319
Query: 345 Q-----GYGLTEC------GGLASSMRDSEETKRHGSVGRLH-----------------E 376
+ YGL E G SS + K R+H
Sbjct: 320 KEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNP 379
Query: 377 LMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETV-----DSEG---WLK 428
+ E K++DP T Q GE+W++ ++ KGY + T D E +L+
Sbjct: 380 IQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLR 439
Query: 429 TGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNP 471
TGDL + N L++ R+K+LI P ++E L +P
Sbjct: 440 TGDLGFLHENE-LYVTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 118/530 (22%), Positives = 216/530 (40%), Gaps = 50/530 (9%)
Query: 35 SSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSK 94
+S P++ +S+ + A T ++A R ++Y ++++ +L
Sbjct: 27 TSDPIARNSDLVSLFREVAATAPERTALSAEDDR-ISYGRLDAWSDAVARTLLAEGVRPG 85
Query: 95 NDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSH 154
+ VA +SP + E V ++L G P + S L S S
Sbjct: 86 DRVALRMSPGA-EAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGC 144
Query: 155 KLPPNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLT 214
+ +RT V + V P D A ++Y+SGTTG KGV +
Sbjct: 145 AVTRVVRTAAVAE-------CKDAEPGPVTGAPGP-GAEDMAYVIYTSGTTGNPKGVPVR 196
Query: 215 HRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGF-LALVRVVAVSETAV--- 270
H N+++L+A P+ SG+ + LFH F ++ + T
Sbjct: 197 HANVLALLA--------GAPSVFDFSGDDRWL---LFHSLSFDFSVWEIWGAFSTGAELV 245
Query: 271 ----FMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGG--- 323
+ R + + +D+ +T + +P +ALT++ + D+S L+Y+ GG
Sbjct: 246 VLPHWAARTPEQYLAVIIDR-GVTVINQTPTAFLALTEAAVRGGRDVSGLRYVIFGGEKL 304
Query: 324 -APLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEE--TKRHGSVGRLHELMEA 380
AP+ + F P ++ GYG+TE + +E + +GR
Sbjct: 305 TAPMLRPWAKAFGLDRP--RLVNGYGITETTVFTTFEEITEAYLAQDASIIGRALPSFGT 362
Query: 381 KVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIE---------TVDSEGWLKTGD 431
+VV G ++P + GELWL G + +GY+ + T E T +S + +TGD
Sbjct: 363 RVVGD-DGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGD 421
Query: 432 LCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAG-QIP 490
L +G R IK + Y+I +++E ++ + ++ DA V + ++
Sbjct: 422 LVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFKPGDLRLV 481
Query: 491 MAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILR 540
A+V R+ GS+ +L + I + Y R + +P++ GK+ R
Sbjct: 482 CAYVARE-GSATTARELRNHIKTLLPAYMHPARYLPLPGLPRTVNGKVDR 530
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 51/337 (15%)
Query: 155 KLPPNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLT 214
+LPP + + + F+ LSTQ+ +D++ + P ++ A LLY+SG+TG KGV ++
Sbjct: 141 ELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENLD----AYLLYTSGSTGTPKGVRVS 196
Query: 215 HRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRV---VAVSE---- 267
N+ S ++ + G V+ +L L V FL L V + E
Sbjct: 197 RHNLSSFSDAWGKL-----------IGNVAPKSLELGGVGKFLCLASRAFDVHIGEXFLA 245
Query: 268 -----TAVFMERFD-FETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSC 321
AV ER + + +T + +T + P L L ++ L + D L YL
Sbjct: 246 WRFGLCAVTGERLSXLDDLPRTFRELGVTHAGIVPSL---LDQTGLVPE-DAPHLVYLGV 301
Query: 322 GGAPLGKEVTDKFKEKFPS---VEIIQGYGLTEC--GGLASSMRDSEETKRHGSVGRLHE 376
G G++ T + ++ + S V ++ YG TE G A + +T+ G H
Sbjct: 302 G----GEKXTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIG-----HP 352
Query: 377 LME--AKVVDPVTGDALSPAQKGELWLRGPTIMKGYIG--DNKATIETVDSEGWLKTGDL 432
L + A V+ P + + + GEL + G + GY+ D K + ++ +TGD+
Sbjct: 353 LGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCD-INGRKXYRTGDI 411
Query: 433 CYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQS 469
D++ + + R E +K + ++ E+ +++S
Sbjct: 412 VRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRS 448
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 134/362 (37%), Gaps = 29/362 (8%)
Query: 196 AVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFG 255
A + +SSGTTG+ K + TH I L + + PQ L+ PL
Sbjct: 167 AYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFA-----PQMR---FLVNSPLSFDAA 218
Query: 256 FLALVRVVAVSETAVFMER--FDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDL 313
L + + V + D + + + + S ++ L L + L
Sbjct: 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDC---L 275
Query: 314 SSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASS--MRDSEETKRHGSV 371
L+ L GG L + + P + ++ GYG TE + D + + +
Sbjct: 276 GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPI 335
Query: 372 GRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGD---NKATIETVDSEGWL- 427
G+ ++D + P + GE+ G + +GY D +A+ + G L
Sbjct: 336 GKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLL 395
Query: 428 ---KTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDE 484
+TGD +D G L + R +K Y++ LE + P I D A++
Sbjct: 396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERN 455
Query: 485 EAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELV 544
Q+ A+ + S + +Q+ +++ V ++P + GK+ R L+
Sbjct: 456 GVKQLLCAWTGKADASP-------QALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALL 508
Query: 545 NH 546
Sbjct: 509 RR 510
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 107/278 (38%), Gaps = 42/278 (15%)
Query: 190 VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLP 249
V D A ++++SG+TG+ KGV+ HR + + +G + EV L P
Sbjct: 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPD--------EVFLQCSP 262
Query: 250 L-FHVFGFLALVRVVAVSETAVFM--ERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSE 306
+ + FG L L + V + D + + V ++ +T + +S L L E
Sbjct: 263 VSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVD-E 320
Query: 307 LTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETK 366
+ + ++ ++Y GG P K + P++ + GYG E G T
Sbjct: 321 VPEAFE--GVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGF---------TT 369
Query: 367 RHGSVGRLHELMEAKVVDPVTG-------DALSPAQK---GELWLRGPTIMKGYIGDNKA 416
H V + P+ G D L PA GEL++ G + GY+
Sbjct: 370 HHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPAL 429
Query: 417 TIETV--------DSEGWLKTGDLCYFDSNGFLFIVDR 446
T E E +TGDL ++G L V R
Sbjct: 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 97/449 (21%), Positives = 158/449 (35%), Gaps = 99/449 (22%)
Query: 70 LTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLG 129
LT+ + R+T ++ L + S D I +P E V + L G + P
Sbjct: 59 LTWSQLYRRTLNVAQELSR--CGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVP----- 111
Query: 130 STSEISHQLHLSKPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLSTQNQNDVVI----- 184
LS P R+ +VL DS L ++ +DVV
Sbjct: 112 ----------LSVPQGGVTDERSD--------SVLSDSSPVAILTTSSAVDDVVQHVARR 153
Query: 185 ---SPPAVVNQS----DA--------------AVLLYSSGTTGKVKGVLLTHRNIISLVA 223
SPP+++ DA A L Y+SG+T GV+ +H+N+
Sbjct: 154 PGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFE 213
Query: 224 SFHHVEYGANPAEPQPSGEVSLITLPLFH----VFGFLA--LVRVVAVSETAV-FMERFD 276
+ P P+ + + LP +H V G A L AV + V F++R
Sbjct: 214 QLXSGYFADTDGIPPPNSAL-VSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPA 272
Query: 277 FETMLKTVDKYKLTSMP-VSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFK 335
L D + ++ P + L T + DL ++ + G + +F
Sbjct: 273 RWXHLXASDFHAFSAAPNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFA 332
Query: 336 EKFPSVEIIQ-----GYGLTECGGLASSMR----------DSEE-TKRHG---SVGRLHE 376
++F + + YGL E ++ + D+E + H + G
Sbjct: 333 DRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATS 392
Query: 377 LME--------AKVVDPVTGDALSPAQKGELWLRGPTIMKGY----------IGDNKATI 418
L+ ++VD T GE+W+ G + GY G T
Sbjct: 393 LISYXLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTP 452
Query: 419 ETVDSEG-WLKTGDLCYFDSNGFLFIVDR 446
EG WL+TGD F ++G FI+ R
Sbjct: 453 SPGTPEGPWLRTGD-SGFVTDGKXFIIGR 480
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 88/449 (19%), Positives = 155/449 (34%), Gaps = 99/449 (22%)
Query: 70 LTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLG 129
LT+ + R+T ++ L + S D I +P E V + L G + P
Sbjct: 59 LTWSQLYRRTLNVAQELSR--CGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVP----- 111
Query: 130 STSEISHQLHLSKPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLSTQNQNDVVI----- 184
LS P R+ +VL DS L ++ +DVV
Sbjct: 112 ----------LSVPQGGVTDERSD--------SVLSDSSPVAILTTSSAVDDVVQHVARR 153
Query: 185 ---SPPAVVNQS----DA--------------AVLLYSSGTTGKVKGVLLTHRNIISLVA 223
SPP+++ DA A L Y+SG+T GV+++H+N+
Sbjct: 154 PGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFE 213
Query: 224 SFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRV-------VAVSETAVFMERFD 276
+ P P+ + + LP +H G + + ++ F++R
Sbjct: 214 QLMSGYFADTDGIPPPNSAL-VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPA 272
Query: 277 FETMLKTVDKYKLTSMP-VSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFK 335
L D + ++ P + L T + DL ++ + G + +F
Sbjct: 273 RWMHLMASDFHAFSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFA 332
Query: 336 EKFPSVEIIQ-----GYGLTECGGLASSMR----------DSEE--------TKRHGSVG 372
++F + + Y L E ++ + D+E G+
Sbjct: 333 DRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATS 392
Query: 373 RLHELME----AKVVDPVTGDALSPAQKGELWLRGPTIMKGY----------IGDNKATI 418
+ ++ ++VD T GE+W+ G + GY G T
Sbjct: 393 LISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTP 452
Query: 419 ETVDSEG-WLKTGDLCYFDSNGFLFIVDR 446
EG WL+TGD F ++G +FI+ R
Sbjct: 453 SPGTPEGPWLRTGD-SGFVTDGKMFIIGR 480
>pdb|3KIH|A Chain A, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
pdb|3KIH|B Chain B, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
pdb|3KIH|C Chain C, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
pdb|3KIH|D Chain D, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
pdb|3KIH|E Chain E, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib2-D2-15)
Length = 97
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 29/85 (34%)
Query: 391 LSPAQKGELWLRGPTIMKGYIGDN--KATIETVDSEGWL----KTGD-------LCYFDS 437
LSP GEL+ G + D K T T D++ WL K GD +FD
Sbjct: 12 LSPG--GELY--------GVLNDKIYKGTPPTHDNDNWLGRAKKIGDGGWNQFQFLFFDP 61
Query: 438 NGFLFIVDRLKELIKYKAYQIPPAE 462
NG+L+ V K K Y+ PP +
Sbjct: 62 NGYLYAVS------KDKLYKAPPPQ 80
>pdb|3BG2|A Chain A, Crystal Structure Of Deoxyguanosinetriphosphate
Triphosphohydrolase From Flavobacterium Sp. Med217
pdb|3BG2|B Chain B, Crystal Structure Of Deoxyguanosinetriphosphate
Triphosphohydrolase From Flavobacterium Sp. Med217
Length = 444
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 299 VVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECG 353
V+ L+K++ SL+ +S G LG+ V K EK+P +E + GY + G
Sbjct: 53 VIPLSKTDFVHTRLTHSLE-VSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFG 106
>pdb|3U52|C Chain C, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
pdb|3U52|D Chain D, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
Length = 333
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 214 THRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVF 254
T + ++ L+ HVE GAN + +G+ + T+ H++
Sbjct: 115 TQKQLLRLLVPLRHVELGANMNNAKIAGDATATTVSQMHIY 155
>pdb|2INP|C Chain C, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
pdb|2INP|D Chain D, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 328
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 214 THRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVF 254
T + ++ L+ HVE GAN + +G+ + T+ H++
Sbjct: 112 TQKQLLRLLVPLRHVELGANMNNAKIAGDATATTVSQMHIY 152
>pdb|2INN|C Chain C, Structure Of The Phenol Hydroxyalse-Regulatory Protein
Complex
pdb|2INN|D Chain D, Structure Of The Phenol Hydroxyalse-Regulatory Protein
Complex
Length = 333
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 214 THRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVF 254
T + ++ L+ HVE GAN + +G+ + T+ H++
Sbjct: 115 TQKQLLRLLVPLRHVELGANXNNAKIAGDATATTVSQXHIY 155
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 27/210 (12%)
Query: 201 SSGTTGKVKGVLLTHRNIISL--VASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLA 258
SSGTTGK V T R+I + V + G P + L + FG+
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDT------------LHNAFGYGL 147
Query: 259 LVRVVAVSETA-------VFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKY 311
+ + A V M E ++ + ++ + V+P ++ L + +
Sbjct: 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM 207
Query: 312 D--LSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHG 369
D SSL+ G P + + ++ + + ++ + YGL+E G + + ETK
Sbjct: 208 DPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVAC-ECVETKDGP 265
Query: 370 SVGRLHELMEAKVVDPVTGDALSPAQKGEL 399
+ H E ++DPVTG+ L +GEL
Sbjct: 266 VIWEDHFYPE--IIDPVTGEVLPDGSQGEL 293
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 280 MLKTVDKYKLTSMPVSPPLVVALTKSELTKKYD--LSSLQYLSCGGAPLGKEVTDKFKEK 337
+K + +K T++ P + L + + D ++L+ L G P E K E+
Sbjct: 170 QIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKI-ER 228
Query: 338 FPSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKG 397
+V+ +G TE G + E+ H + +++DP TG+ + + G
Sbjct: 229 XLNVKAYNSFGXTEXNGPGVAFECQEQNGXHF----WEDCYLVEIIDPETGEPVPEGEIG 284
Query: 398 ELWL 401
EL L
Sbjct: 285 ELVL 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,925,352
Number of Sequences: 62578
Number of extensions: 637069
Number of successful extensions: 1859
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 95
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)