Query 008749
Match_columns 555
No_of_seqs 205 out of 2803
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 10:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 5.7E-85 1.9E-89 687.0 52.7 518 18-549 4-535 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 5.6E-82 1.9E-86 665.2 51.7 513 19-549 8-543 (548)
3 4fuq_A Malonyl COA synthetase; 100.0 5.4E-82 1.9E-86 658.7 47.8 487 43-549 4-500 (503)
4 3rix_A Luciferase, luciferin 4 100.0 1.1E-82 3.8E-87 671.6 41.1 522 19-551 4-543 (550)
5 3g7s_A Long-chain-fatty-acid-- 100.0 2E-82 7E-87 669.5 43.0 509 23-551 7-544 (549)
6 3r44_A Fatty acyl COA syntheta 100.0 9.9E-82 3.4E-86 659.0 44.1 492 38-550 15-514 (517)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.2E-80 4.2E-85 654.1 49.3 490 39-549 25-531 (539)
8 3fce_A D-alanine--poly(phospho 100.0 2.1E-80 7.2E-85 649.3 46.6 496 39-554 1-509 (512)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.5E-79 5.2E-84 641.1 49.9 487 39-548 2-503 (504)
10 1pg4_A Acetyl-COA synthetase; 100.0 1.9E-79 6.3E-84 657.8 50.5 496 40-550 77-622 (652)
11 3etc_A AMP-binding protein; ad 100.0 9.3E-80 3.2E-84 651.2 44.2 510 22-549 39-579 (580)
12 3e7w_A D-alanine--poly(phospho 100.0 6E-79 2.1E-83 637.7 48.7 493 39-553 1-507 (511)
13 3tsy_A Fusion protein 4-coumar 100.0 5.6E-80 1.9E-84 692.6 42.6 524 16-550 41-583 (979)
14 3o83_A Peptide arylation enzym 100.0 1.7E-80 6E-85 653.6 36.1 493 39-551 30-542 (544)
15 3l8c_A D-alanine--poly(phospho 100.0 1.1E-78 3.8E-83 637.9 45.0 495 39-553 4-516 (521)
16 1ry2_A Acetyl-coenzyme A synth 100.0 2.5E-78 8.6E-83 649.2 48.5 497 40-550 83-638 (663)
17 1v25_A Long-chain-fatty-acid-C 100.0 3.2E-79 1.1E-83 643.6 40.6 490 38-549 17-536 (541)
18 3rg2_A Enterobactin synthase c 100.0 1.2E-77 4.1E-82 641.2 53.1 488 38-549 26-534 (617)
19 3ivr_A Putative long-chain-fat 100.0 1E-79 3.4E-84 643.6 34.9 488 38-551 5-503 (509)
20 4gr5_A Non-ribosomal peptide s 100.0 2.6E-79 8.9E-84 648.4 36.5 482 38-546 74-568 (570)
21 3c5e_A Acyl-coenzyme A synthet 100.0 1.9E-77 6.5E-82 632.8 49.3 492 40-554 39-569 (570)
22 4dg8_A PA1221; ANL superfamily 100.0 9.1E-78 3.1E-82 639.4 45.0 478 38-550 26-514 (620)
23 1amu_A GRSA, gramicidin synthe 100.0 8E-78 2.7E-82 634.7 43.6 478 38-548 38-528 (563)
24 2v7b_A Benzoate-coenzyme A lig 100.0 2.2E-77 7.6E-82 628.9 46.6 483 39-545 23-528 (529)
25 3ipl_A 2-succinylbenzoate--COA 100.0 3.9E-77 1.3E-81 623.1 44.3 482 39-551 1-499 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 4.2E-77 1.4E-81 621.7 38.2 473 39-545 22-504 (505)
27 3ite_A SIDN siderophore synthe 100.0 2.4E-75 8E-80 618.1 35.3 501 38-553 19-547 (562)
28 2vsq_A Surfactin synthetase su 100.0 3.2E-74 1.1E-78 661.4 45.9 480 39-546 464-957 (1304)
29 3kxw_A Saframycin MX1 syntheta 100.0 3.6E-75 1.2E-79 621.2 31.3 495 38-554 10-572 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 9.7E-73 3.3E-77 601.1 35.8 488 38-549 20-563 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.6E-60 8.9E-65 493.9 26.7 390 39-446 24-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 2.5E-54 8.4E-59 428.8 22.5 316 192-550 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 2.3E-50 8E-55 413.0 26.0 330 189-542 81-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.3E-50 7.8E-55 414.0 20.1 332 190-544 89-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 2.1E-49 7.3E-54 406.0 24.3 327 190-542 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 3.6E-32 1.2E-36 271.8 17.4 242 189-456 87-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.5 6E-15 2.1E-19 118.2 7.0 95 445-541 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.5 6.8E-15 2.3E-19 118.2 7.3 95 445-540 1-101 (109)
39 4eql_A 4-substituted benzoates 99.0 2.3E-09 7.9E-14 109.8 14.8 134 313-470 296-447 (581)
40 4b2g_A GH3-1 auxin conjugating 99.0 4.3E-09 1.5E-13 107.9 14.9 133 313-469 301-458 (609)
41 4epl_A Jasmonic acid-amido syn 99.0 1.1E-08 3.7E-13 104.5 17.0 161 313-497 301-488 (581)
42 2y4o_A Phenylacetate-coenzyme 91.2 1.3 4.6E-05 44.0 11.5 81 69-151 111-193 (443)
43 2y27_A Phenylacetate-coenzyme 90.9 0.95 3.2E-05 45.0 10.0 81 69-151 109-191 (437)
44 3qov_A Phenylacetate-coenzyme 87.8 1.8 6E-05 43.0 9.2 81 69-151 105-187 (436)
45 3hgu_A EHPF; phenazine, antibi 76.2 6.4 0.00022 37.8 7.8 82 69-153 110-216 (369)
46 4gs5_A Acyl-COA synthetase (AM 75.5 4 0.00014 39.2 6.1 84 58-148 41-129 (358)
47 3ipl_A 2-succinylbenzoate--COA 67.6 18 0.00061 36.4 9.1 78 69-151 182-260 (501)
48 1v25_A Long-chain-fatty-acid-C 64.3 1E+02 0.0035 31.0 14.2 102 191-302 31-133 (541)
49 2d1s_A Luciferase, luciferin 4 64.1 21 0.0007 36.5 8.8 91 58-151 193-292 (548)
50 1mdb_A 2,3-dihydroxybenzoate-A 63.7 22 0.00076 36.1 9.0 78 69-151 201-281 (539)
51 3r44_A Fatty acyl COA syntheta 63.2 27 0.00094 35.2 9.5 77 69-151 189-267 (517)
52 3o83_A Peptide arylation enzym 62.8 24 0.00084 35.8 9.1 78 69-151 210-290 (544)
53 3g7s_A Long-chain-fatty-acid-- 62.4 76 0.0026 32.1 12.8 105 191-302 32-138 (549)
54 3ivr_A Putative long-chain-fat 62.3 71 0.0024 31.9 12.5 97 191-301 19-116 (509)
55 3rix_A Luciferase, luciferin 4 61.0 15 0.00052 37.5 7.2 81 69-151 209-290 (550)
56 3ni2_A 4-coumarate:COA ligase; 59.3 57 0.0019 33.0 11.1 98 190-299 34-132 (536)
57 3e7w_A D-alanine--poly(phospho 58.4 20 0.0007 36.0 7.5 79 69-151 162-243 (511)
58 3c5e_A Acyl-coenzyme A synthet 56.1 1.8E+02 0.006 29.6 14.5 103 191-302 56-160 (570)
59 3kxw_A Saframycin MX1 syntheta 55.3 21 0.00071 36.7 7.1 78 69-150 186-268 (590)
60 3fce_A D-alanine--poly(phospho 54.7 19 0.00064 36.3 6.5 79 69-151 163-244 (512)
61 1t5h_X 4-chlorobenzoyl COA lig 54.5 1.1E+02 0.0039 30.3 12.4 100 191-302 15-117 (504)
62 3t5a_A Long-chain-fatty-acid-- 54.2 91 0.0031 30.7 11.5 107 191-305 37-149 (480)
63 3ezx_A MMCP 1, monomethylamine 50.8 91 0.0031 27.1 9.4 83 250-334 103-195 (215)
64 2v7b_A Benzoate-coenzyme A lig 50.5 89 0.0031 31.4 10.9 96 191-300 36-132 (529)
65 3rg2_A Enterobactin synthase c 49.1 58 0.002 33.6 9.4 78 69-151 203-283 (617)
66 1ry2_A Acetyl-coenzyme A synth 48.4 1.5E+02 0.0051 30.8 12.5 98 191-296 95-194 (663)
67 4dg8_A PA1221; ANL superfamily 47.1 43 0.0015 34.7 7.9 79 69-152 183-263 (620)
68 1amu_A GRSA, gramicidin synthe 46.3 1.5E+02 0.0051 30.1 11.8 97 191-301 52-149 (563)
69 3etc_A AMP-binding protein; ad 46.3 1.1E+02 0.0039 31.1 10.9 97 191-296 69-166 (580)
70 3tbh_A O-acetyl serine sulfhyd 45.2 47 0.0016 31.3 7.2 90 58-150 36-126 (334)
71 2cvi_A 75AA long hypothetical 45.0 60 0.0021 22.9 6.2 49 460-518 15-63 (83)
72 3nyq_A Malonyl-COA ligase; A/B 44.5 85 0.0029 31.3 9.5 77 69-151 174-252 (505)
73 4gr5_A Non-ribosomal peptide s 42.1 1.7E+02 0.0058 29.7 11.5 94 191-298 88-182 (570)
74 3tsy_A Fusion protein 4-coumar 38.4 1.5E+02 0.0053 32.5 11.1 97 190-298 73-170 (979)
75 1pg4_A Acetyl-COA synthetase; 38.3 1.8E+02 0.006 30.2 11.0 98 191-296 89-187 (652)
76 1wrj_A Methylated-DNA--protein 37.8 34 0.0012 28.1 4.2 54 23-88 53-111 (156)
77 3vc3_A Beta-cyanoalnine syntha 37.6 72 0.0025 30.1 7.2 91 58-150 51-141 (344)
78 4fuq_A Malonyl COA synthetase; 37.3 1.3E+02 0.0045 29.9 9.6 82 211-297 27-109 (503)
79 2zbc_A 83AA long hypothetical 35.2 98 0.0034 21.5 6.1 49 460-518 15-63 (83)
80 4hlb_A Uncharacterized protein 32.2 1.1E+02 0.0038 21.4 5.3 36 67-102 61-96 (115)
81 3ite_A SIDN siderophore synthe 32.2 72 0.0025 32.4 6.7 82 69-150 194-280 (562)
82 3l8c_A D-alanine--poly(phospho 28.4 1.7E+02 0.0059 29.1 8.8 81 211-296 28-109 (521)
83 4h1h_A LMO1638 protein; MCCF-l 28.3 1.4E+02 0.0047 27.9 7.3 60 91-150 8-86 (327)
84 2djw_A Probable transcriptiona 27.8 1.2E+02 0.0041 21.8 5.5 49 460-518 15-63 (92)
85 3ju7_A Putative PLP-dependent 27.2 1.1E+02 0.0039 29.0 6.8 62 84-149 68-136 (377)
86 3sr3_A Microcin immunity prote 25.7 1.2E+02 0.0042 28.4 6.5 61 91-151 9-88 (336)
87 4e5s_A MCCFLIKE protein (BA_56 25.6 1.5E+02 0.0052 27.7 7.0 61 91-151 8-87 (331)
88 3gqw_A Fatty acid AMP ligase; 25.4 3.1E+02 0.011 27.5 10.2 87 211-302 48-142 (576)
89 3tla_A MCCF; serine protease, 25.1 1.5E+02 0.005 28.3 6.9 62 90-151 38-118 (371)
90 2q3b_A Cysteine synthase A; py 24.5 1.9E+02 0.0065 26.6 7.6 89 58-150 32-121 (313)
91 4eez_A Alcohol dehydrogenase 1 23.5 2E+02 0.0068 26.8 7.7 77 69-149 136-215 (348)
92 2vsq_A Surfactin synthetase su 23.4 1.1E+02 0.0036 35.1 6.6 80 69-153 626-708 (1304)
93 1sfe_A ADA O6-methylguanine-DN 23.0 45 0.0015 28.1 2.5 54 23-88 79-138 (180)
94 1zsy_A Mitochondrial 2-enoyl t 23.0 1.8E+02 0.006 27.4 7.2 79 69-148 139-222 (357)
95 2l66_A SSO7C4, transcriptional 22.7 83 0.0028 20.1 3.3 21 85-105 19-39 (53)
96 3tqh_A Quinone oxidoreductase; 22.6 2.3E+02 0.008 25.9 7.9 74 69-148 125-202 (321)
97 4aec_A Cysteine synthase, mito 22.4 1.9E+02 0.0063 28.3 7.2 61 90-150 168-229 (430)
98 2pqm_A Cysteine synthase; OASS 21.0 2.3E+02 0.0077 26.5 7.4 89 58-150 43-132 (343)
99 2egu_A Cysteine synthase; O-ac 20.9 2.1E+02 0.0071 26.3 7.0 89 58-150 30-119 (308)
100 1o69_A Aminotransferase; struc 20.6 2.9E+02 0.0098 26.1 8.3 62 85-150 63-130 (394)
101 3d1p_A Putative thiosulfate su 20.5 62 0.0021 25.6 2.9 100 17-121 3-117 (139)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.7e-85 Score=686.97 Aligned_cols=518 Identities=37% Similarity=0.628 Sum_probs=453.0
Q ss_pred CCCceeecCCCCCCCCCCCCCCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCE
Q 008749 18 SQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDV 97 (555)
Q Consensus 18 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~ 97 (555)
.+..+|.+..++.++|. .+|+.++|.++++++|+ ++|+++...++++||+||.++++++|+.|.+ .|+++||+
T Consensus 4 ~~~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~p~---~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~ 76 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPK---NLPLHSYVLENLSNHSS---KPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDV 76 (536)
T ss_dssp -CCCCBCCSSCCCCCCS---SCCHHHHHTTTGGGSTT---SEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCE
T ss_pred ccceEEecCCCCCCCCC---CCcHHHHHHHHhhcCCC---ceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCE
Confidence 34567777777777765 38999999999999999 9999997667899999999999999999998 89999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCC-----CCeEEEeCCc----
Q 008749 98 AFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPP-----NIRTVLVDSP---- 168 (555)
Q Consensus 98 V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-----~~~~~~~~~~---- 168 (555)
|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+.. ....+.++..
T Consensus 77 V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (536)
T 3ni2_A 77 IMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGC 156 (536)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTC
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCc
Confidence 9999999999999999999999999999999999999999999999999998765443321 3345555431
Q ss_pred -hhHHhhhccCCCCcccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEe
Q 008749 169 -EFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLIT 247 (555)
Q Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (555)
.+.++...... ..+.....++++++|+|||||||.||+|+++|+++.+.+......... .....+++++++.
T Consensus 157 ~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~---~~~~~~~d~~l~~ 229 (536)
T 3ni2_A 157 LHFSELTQADEN----EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP---NLYFHSEDVILCV 229 (536)
T ss_dssp EETHHHHTSCGG----GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSC---SSCCCTTCCEEEC
T ss_pred cCHHHHhhcccc----ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccc---cccCCCCCEEEEe
Confidence 23333332221 223345678999999999999999999999999998887665432110 0001178999999
Q ss_pred cChhHHHHH-HHHHHHHHcCCeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCC
Q 008749 248 LPLFHVFGF-LALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPL 326 (555)
Q Consensus 248 ~p~~~~~g~-~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l 326 (555)
+|++|.+++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......+++++|.+++||+++
T Consensus 230 ~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l 309 (536)
T 3ni2_A 230 LPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPL 309 (536)
T ss_dssp SCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCC
T ss_pred cChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCC
Confidence 999999999 5678999999999999999999999999999999999999999999998877777889999999999999
Q ss_pred CHHHHHHHHHHCCCCcEEcccCccccccccccCC---CCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeC
Q 008749 327 GKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMR---DSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRG 403 (555)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~ 403 (555)
++++.+++++.||++++++.||+||++.+++.+. ........+++|+|+++++++|+|++++++++.|+.|||+++|
T Consensus 310 ~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g 389 (536)
T 3ni2_A 310 GKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRG 389 (536)
T ss_dssp CHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEES
T ss_pred CHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeC
Confidence 9999999999999999999999999987655432 2223345788999999999999998899999999999999999
Q ss_pred CcccccccCCchhhhcccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeC
Q 008749 404 PTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPD 483 (555)
Q Consensus 404 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~ 483 (555)
++++.||+++++.|.+.|+.++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.++
T Consensus 390 ~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 390 DQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKD 469 (536)
T ss_dssp TTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred cccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeec
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhc
Q 008749 484 EEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALS 549 (555)
Q Consensus 484 ~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 549 (555)
+..++.++++|+..++...+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 470 ~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 470 EDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 988999999999998888999999999999999999999999999999999999999999998753
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=5.6e-82 Score=665.18 Aligned_cols=513 Identities=35% Similarity=0.543 Sum_probs=444.0
Q ss_pred CCceeecCCCCCCCCCCCCCCCHHH-HhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCE
Q 008749 19 QTKTFHSVRPKIPLPPSSQPLSVTQ-FTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDV 97 (555)
Q Consensus 19 ~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~ 97 (555)
+.|.|.+..+..++|. ..|+.+ ++.++++++ + ++|+++...++++||+||.++++++|+.|++ .|+++||+
T Consensus 8 ~~~~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~-~---~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~ 79 (548)
T 2d1s_A 8 ENIVVGPKPFYPIEEG---SAGTQLRKYMERYAKL-G---AIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGR 79 (548)
T ss_dssp TTSEECCCCSSCCCSS---CHHHHHHHHHHHHHHH-T---CEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCE
T ss_pred cceEecCCCCCCCCCC---cCcHHHHHHHhhhccc-C---CceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCE
Confidence 4467777766655554 368999 899999988 8 9999985446899999999999999999998 89999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCC-------CCeEEEeCCc--
Q 008749 98 AFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPP-------NIRTVLVDSP-- 168 (555)
Q Consensus 98 V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-------~~~~~~~~~~-- 168 (555)
|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.....+.. ...++.++..
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 9999999999999999999999999999999999999999999999999998865433211 2234444432
Q ss_pred -----hhHHhhhccCCCCcccCCCCcC------CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCC
Q 008749 169 -----EFLSLLSTQNQNDVVISPPAVV------NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEP 237 (555)
Q Consensus 169 -----~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~ 237 (555)
.+.++........ ...... .++++++++|||||||.||+|+++|+++.+.+............
T Consensus 160 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~--- 233 (548)
T 2d1s_A 160 YRGYQCLDTFIKRNTPPG---FQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV--- 233 (548)
T ss_dssp BTTBCBHHHHHHHTSCTT---CCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCC---
T ss_pred ccccccHHHHHhcCcccc---CCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCC---
Confidence 2444443321110 011111 23899999999999999999999999999888776554211111
Q ss_pred CCCCCEEEEecChhHHHHHHH-HHHHHHcCCeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCc
Q 008749 238 QPSGEVSLITLPLFHVFGFLA-LVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSL 316 (555)
Q Consensus 238 ~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 316 (555)
.+++++++.+|++|.+|+.. ++.++ .|+++++.+.+++..+++.++++++|+++++|+++..+.+.......+++++
T Consensus 234 -~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 311 (548)
T 2d1s_A 234 -SPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNL 311 (548)
T ss_dssp -CTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTC
T ss_pred -CccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccce
Confidence 17899999999999999965 56666 9999999998999999999999999999999999999998776666678999
Q ss_pred eEEEEccCCCCHHHHHHHHHHCCCCcEEcccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCc
Q 008749 317 QYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQK 396 (555)
Q Consensus 317 r~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 396 (555)
|.+++||+++++++.+++.+.|+++++++.||+||++.+++... ......+++|+|+++++++|+|++++++++.|+.
T Consensus 312 r~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 389 (548)
T 2d1s_A 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP--EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR 389 (548)
T ss_dssp CEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC--TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC
T ss_pred eEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecC--cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC
Confidence 99999999999999999999998899999999999987666532 2234578999999999999999888999999999
Q ss_pred cEEEEeCCcccccccCCchhhhcccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceE
Q 008749 397 GELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADA 476 (555)
Q Consensus 397 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~ 476 (555)
|||+++|++++.||+++++.|.+.|+.++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.++
T Consensus 390 GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a 469 (548)
T 2d1s_A 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDA 469 (548)
T ss_dssp EEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEE
T ss_pred eEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEE
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCccc-eEEEccccCCCCCCcccHHHHHHHHhc
Q 008749 477 AVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVNSIPKSEAGKILRRELVNHALS 549 (555)
Q Consensus 477 ~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~lP~t~~GKv~r~~l~~~~~~ 549 (555)
+|++.+++..++.++++|++.++...+.++|+++++++|+.|++|. .++++++||+|++||++|++|++.+.+
T Consensus 470 ~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 470 GVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp EEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred EEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 9999999888899999999988777889999999999999999999 999999999999999999999998864
No 3
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.4e-82 Score=658.68 Aligned_cols=487 Identities=24% Similarity=0.383 Sum_probs=427.1
Q ss_pred HHhhcccccCCCCCCCcEEEE-CCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 008749 43 QFTLSILHKSATTTAAPFLMN-AATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVV 121 (555)
Q Consensus 43 ~~~~~~~~~~p~~~~~~a~~~-~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 121 (555)
++|.++++++|+ ++++.. ...++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus 4 ~l~~~~a~~~p~---~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARLFDKLDD---PHKLAIETAAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHHHSCCSC---TTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHhCCC---CceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 467888899998 555552 1236899999999999999999998 89999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCC-----CCeEEEeCCch---hHHhhhccCCCCcccCCCCcCCCC
Q 008749 122 VSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPP-----NIRTVLVDSPE---FLSLLSTQNQNDVVISPPAVVNQS 193 (555)
Q Consensus 122 ~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 193 (555)
++|+++.++.+++.++++.++++++|++......+.. ......++... +......... ........++
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 155 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASE----AFATIDRGAD 155 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCS----CCCCCCCCTT
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCC----CcCcCCCCCC
Confidence 9999999999999999999999999998766544321 12233333221 1111111111 2223456789
Q ss_pred CEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHH-HHHHHHHHcCCeEEEe
Q 008749 194 DAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGF-LALVRVVAVSETAVFM 272 (555)
Q Consensus 194 ~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~ 272 (555)
++++|+|||||||.||+|+++|+++.+.+......+... ++++++..+|++|.+|+ ...+.++..|+++++.
T Consensus 156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-------~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 228 (503)
T 4fuq_A 156 DLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFT-------PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFL 228 (503)
T ss_dssp SEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCC-------TTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC
T ss_pred CeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCC-------CCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc
Confidence 999999999999999999999999999888777665532 88999999999999997 5677899999999999
Q ss_pred CCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCcccc
Q 008749 273 ERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352 (555)
Q Consensus 273 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 352 (555)
+.+++..+++.++ ++|+++++|+++..+.+........++++|.+++||+++++++.++|.+.+ ++++++.||+||+
T Consensus 229 ~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 305 (503)
T 4fuq_A 229 PKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTET 305 (503)
T ss_dssp SSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTT
T ss_pred CCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEccccc
Confidence 9999999999998 899999999999999998777777789999999999999999999999998 8999999999999
Q ss_pred ccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCCCCeeecCce
Q 008749 353 GGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDL 432 (555)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~ 432 (555)
+..... ........+++|+|+++++++|+|++++++++.|+.|||+++|++++.||+++++.+.+.|..++||+|||+
T Consensus 306 ~~~~~~--~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl 383 (503)
T 4fuq_A 306 NMNTSN--PYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDL 383 (503)
T ss_dssp EECBCC--CSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEE
T ss_pred Cccccc--CCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEccee
Confidence 876543 223344578899999999999999999999999999999999999999999999999999988999999999
Q ss_pred EEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q 008749 433 CYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIA 512 (555)
Q Consensus 433 ~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~ 512 (555)
|++++||++++.||+||+||++|++|+|.|||++|.++|+|.+++|++++++..++.++++|++.++...+.++++++++
T Consensus 384 ~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~ 463 (503)
T 4fuq_A 384 GKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLD 463 (503)
T ss_dssp EEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHB
T ss_pred EEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999888899999999999
Q ss_pred hcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhc
Q 008749 513 KQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALS 549 (555)
Q Consensus 513 ~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 549 (555)
++|+.|++|..++++++||+|++||+||++|++++.+
T Consensus 464 ~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 464 GQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp TTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred hhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 9999999999999999999999999999999999865
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.1e-82 Score=671.63 Aligned_cols=522 Identities=32% Similarity=0.544 Sum_probs=346.4
Q ss_pred CCceeecCCCCCCCCCCCCCCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEE
Q 008749 19 QTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVA 98 (555)
Q Consensus 19 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V 98 (555)
...+|+++.+..++|. .|+.++|.++++++|++++.+++.+...++++||+||.++++++|++|++ .|+++||+|
T Consensus 4 ~~~~~~~~~~~~~~~~----~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 78 (550)
T 3rix_A 4 AKNIKKGPAPFYPLED----GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRI 78 (550)
T ss_dssp GGGSEECCCCSSCCCC----SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEE
T ss_pred ccceeeCCCCCCCccc----CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCCCCEE
Confidence 4567888888888888 99999999999999996555555676567899999999999999999998 899999999
Q ss_pred EEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCC-------CCCeEEEeCCc---
Q 008749 99 FILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLP-------PNIRTVLVDSP--- 168 (555)
Q Consensus 99 ~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-------~~~~~~~~~~~--- 168 (555)
+++++|++++++++|||+++|++++|+++.++.+++.++++.+++++++++......+. .....+.++..
T Consensus 79 ~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (550)
T 3rix_A 79 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY 158 (550)
T ss_dssp EEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB
T ss_pred EEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc
Confidence 99999999999999999999999999999999999999999999999999876543321 11223333321
Q ss_pred ----hhHHhhhccCCCCc---ccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCC
Q 008749 169 ----EFLSLLSTQNQNDV---VISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSG 241 (555)
Q Consensus 169 ----~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.+.++......... ...+.....++++++|+|||||||.||+|+++|+++.+.+............. ++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~----~~ 234 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII----PD 234 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCC----TT
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCC----CC
Confidence 23333322211100 01112223457899999999999999999999999988877665442211111 78
Q ss_pred CEEEEecChhHHHHHHHHHHHHHcCCeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEE
Q 008749 242 EVSLITLPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSC 321 (555)
Q Consensus 242 ~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~ 321 (555)
+++++.+|++|.+|+..++.++..|+++++.+.+++..+++.++++++|+++++|+++..+++.......+++++|.+++
T Consensus 235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~ 314 (550)
T 3rix_A 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314 (550)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEE
T ss_pred cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEE
Confidence 99999999999999988899999999999999999999999999999999999999999999988777778899999999
Q ss_pred ccCCCCHHHHHHHHHHCCCCcEEcccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEE
Q 008749 322 GGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWL 401 (555)
Q Consensus 322 ~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v 401 (555)
||+++++++.+++.+.|+...+++.||+||++..++.... .....+++|+|+++++++|+|++++++++.|+.|||+|
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v 392 (550)
T 3rix_A 315 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCV 392 (550)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT--TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEE
T ss_pred ecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC--CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEE
Confidence 9999999999999999954569999999999977765433 33467899999999999999988999999999999999
Q ss_pred eCCcccccccCCchhhhcccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEee
Q 008749 402 RGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPY 481 (555)
Q Consensus 402 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~ 481 (555)
+|++++.||+++++.|.+.|+.++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus 393 ~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~ 472 (550)
T 3rix_A 393 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGL 472 (550)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------------------
T ss_pred eCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCccc-eEEEccccCCCCCCcccHHHHHHHHhcCC
Q 008749 482 PDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIR-RVAFVNSIPKSEAGKILRRELVNHALSGN 551 (555)
Q Consensus 482 ~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 551 (555)
+++..++.++++|++.++...+.++++++++++|+.++.|. .++++++||+|++||+||++|++++.+..
T Consensus 473 ~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 473 PDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 99988999999999988878888999999999999987665 68999999999999999999999987643
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2e-82 Score=669.50 Aligned_cols=509 Identities=28% Similarity=0.456 Sum_probs=402.2
Q ss_pred eecCCCCCCCCCCCCCCCHHHHhhcccccCCCCCCCcEEEECCC------CceecHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008749 23 FHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAAT------GRRLTYPEFLRQTNSLTLSLQKHYSLSKND 96 (555)
Q Consensus 23 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~------~~~~Ty~el~~~v~~la~~L~~~~g~~~gd 96 (555)
|....++.++|. .|+.++|.++++++|+ ++|+++.+. .+++||+||.++++++|+.|.+ .|+++||
T Consensus 7 ~~~~~p~~~~~~----~~l~~~l~~~a~~~p~---~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd 78 (549)
T 3g7s_A 7 YKIGFPSLYYPK----ISLADRIDAAAEKFGE---KTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKGE 78 (549)
T ss_dssp SCCCCCCCCCCC----CCTTHHHHHHHHHHTT---SEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTTC
T ss_pred eccCCCCCCcCC----CCHHHHHHHHHHhCCC---ceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCCC
Confidence 444455556666 8999999999999999 999998731 1899999999999999999998 8999999
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCC-----CC-eEEEeC--Cc
Q 008749 97 VAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPP-----NI-RTVLVD--SP 168 (555)
Q Consensus 97 ~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-----~~-~~~~~~--~~ 168 (555)
+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.. .. ..+..+ ..
T Consensus 79 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (549)
T 3g7s_A 79 HVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVN 158 (549)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSS
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCc
Confidence 99999999999999999999999999999999999999999999999999998765433211 12 233332 22
Q ss_pred hhHHhhhccCCCCcccCCCCcCC-CCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEe
Q 008749 169 EFLSLLSTQNQNDVVISPPAVVN-QSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLIT 247 (555)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (555)
.+.++....... ....... ++++++|+|||||||.||+|+++|+++.+.+......+... ++++++..
T Consensus 159 ~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-------~~d~~~~~ 227 (549)
T 3g7s_A 159 SLSEVMDSGSED----FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLS-------HMDTIVGC 227 (549)
T ss_dssp CHHHHHHHSCSC----CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCC-------TTCEEECC
T ss_pred CHHHHHhcCccc----cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCC-------CCCEEEEe
Confidence 344544433221 1122233 38999999999999999999999999999888877766533 78999999
Q ss_pred cChhHHHHHHHHHHHHHcCCeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCC--CCCCCceEEEEccCC
Q 008749 248 LPLFHVFGFLALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKK--YDLSSLQYLSCGGAP 325 (555)
Q Consensus 248 ~p~~~~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~~~G~~ 325 (555)
+|++|.+++..++.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+...... .+++++|.+++||++
T Consensus 228 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~ 307 (549)
T 3g7s_A 228 MPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWP 307 (549)
T ss_dssp SCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSC
T ss_pred CcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCcc
Confidence 999999999778899999999999999999999999999999999999999999988765444 568899999999999
Q ss_pred CCHHHHHHHHHH----C--CCCcEEcccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEE
Q 008749 326 LGKEVTDKFKEK----F--PSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGEL 399 (555)
Q Consensus 326 l~~~~~~~~~~~----~--~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel 399 (555)
+++++.+++.+. + +++++++.||+||++.+++..... .....+++|+|+++++++|+|++++++++.|+.|||
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl 386 (549)
T 3g7s_A 308 VAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL-RLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEI 386 (549)
T ss_dssp CCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGG-GGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEE
T ss_pred CCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCcc-ccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEE
Confidence 999999999988 5 238999999999998877654322 224578899999999999999889999999999999
Q ss_pred EEeCCcccccccCCchhhhcccC--CCC--eeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcce
Q 008749 400 WLRGPTIMKGYIGDNKATIETVD--SEG--WLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIAD 475 (555)
Q Consensus 400 ~v~~~~~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~ 475 (555)
+|+|++++.||+++++.+.+.|. .+| ||+|||+|++++||++++.||+||+||++|++|+|.|||++|.++|+|.+
T Consensus 387 ~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 466 (549)
T 3g7s_A 387 VIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMD 466 (549)
T ss_dssp EEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEE
T ss_pred EEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeee
Confidence 99999999999999999999873 456 99999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCCCCCceEEEEEEeCCC--CCCCHHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcCC
Q 008749 476 AAVIPYPDEEAGQIPMAFVVRKPG--SSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSGN 551 (555)
Q Consensus 476 ~~v~~~~~~~~~~~l~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 551 (555)
++|++.+++..++.++++|++.++ ...+.++|+++++++|+.|++|..++++++||+|++||++|++|++.+.+.+
T Consensus 467 a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 544 (549)
T 3g7s_A 467 VAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGH 544 (549)
T ss_dssp EEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC--------------------
T ss_pred EEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccc
Confidence 999999998889999999999877 5688999999999999999999999999999999999999999999987764
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=9.9e-82 Score=658.98 Aligned_cols=492 Identities=25% Similarity=0.403 Sum_probs=430.2
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLS 117 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 117 (555)
..|+.++|.++++++|+ ++|+++.+.++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus 15 ~~~l~~~l~~~a~~~p~---~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 90 (517)
T 3r44_A 15 MKNIGWMLRQRATVSPR---LQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAAK 90 (517)
T ss_dssp GGCHHHHHHHHHHHSTT---SEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCC---CeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHHHH
Confidence 48999999999999999 9999998445599999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCC-------CCCeEE-EeCCchhHHhhhccCCCCcccCCCCc
Q 008749 118 LGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLP-------PNIRTV-LVDSPEFLSLLSTQNQNDVVISPPAV 189 (555)
Q Consensus 118 ~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (555)
+|++++|+++.++.+++.++++.++++++|++......+. .....+ ......+.+....... ..+...
T Consensus 91 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 166 (517)
T 3r44_A 91 LGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA----DEPAVE 166 (517)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCC----CCCCCC
T ss_pred hCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCc----CCCCCC
Confidence 9999999999999999999999999999999875433211 000111 1112233333333222 223345
Q ss_pred CCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeE
Q 008749 190 VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETA 269 (555)
Q Consensus 190 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~ 269 (555)
..++++++|+|||||||.||+|+++|+++.+.+......+.. . ++++++..+|++|.+++...+.++..|+++
T Consensus 167 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~------~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~ 239 (517)
T 3r44_A 167 CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDV-R------YRDRLLLPLPMFHVAALTTVIFSAMRGVTL 239 (517)
T ss_dssp CCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCC-C------TTCEEEECSCTTSHHHHHHHHHHHHHTCEE
T ss_pred CCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCC-C------CCCEEEEeCchHHHHHHHHHHHHHhcCeEE
Confidence 678999999999999999999999999999988887766543 2 789999999999999997766666699999
Q ss_pred EEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCc
Q 008749 270 VFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGL 349 (555)
Q Consensus 270 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~ 349 (555)
++.+.+++..+++.+.++++|++.++|+++..+.+.......+++++|.+++||+++++++.+.+.+. ++++++.||+
T Consensus 240 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~ 317 (517)
T 3r44_A 240 ISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYAL 317 (517)
T ss_dssp EECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEEC
T ss_pred EEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecc
Confidence 99999999999999999999999999999999998876666678999999999999999999999886 8999999999
Q ss_pred cccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCCCCeeec
Q 008749 350 TECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKT 429 (555)
Q Consensus 350 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~T 429 (555)
||++..++...........+++|+|.++++++|+| +++.+++.| .|||+++|++++.||+++++.+.+.| .++||+|
T Consensus 318 TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~T 394 (517)
T 3r44_A 318 TESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRT 394 (517)
T ss_dssp GGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEE
T ss_pred cccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEec
Confidence 99987666544433345678999999999999999 678888888 89999999999999999999999999 7899999
Q ss_pred CceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q 008749 430 GDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMD 509 (555)
Q Consensus 430 GD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~ 509 (555)
||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++ ..++...++++|++
T Consensus 395 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~ 473 (517)
T 3r44_A 395 GDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVE 473 (517)
T ss_dssp EEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHHH
T ss_pred ceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888 55666788999999
Q ss_pred HHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcC
Q 008749 510 FIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSG 550 (555)
Q Consensus 510 ~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 550 (555)
+++++|+.|++|..++++++||+|++||++|++|++.+.+.
T Consensus 474 ~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 474 YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp HHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred HHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999764
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.2e-80 Score=654.07 Aligned_cols=490 Identities=23% Similarity=0.359 Sum_probs=427.4
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSL 118 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 118 (555)
.|+.++|.++++++|+ ++|+++. ++++||+||+++++++|+.|.+ +|+++||+|+++++|++++++++|||+++
T Consensus 25 ~tl~~~l~~~a~~~p~---~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGD---RIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp CCHHHHHHHHHHHHTT---SEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC---CEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 7999999999999999 9999997 7899999999999999999998 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccc--------cC---CCCCe-EEEeCC-chhHHhhhccCCCCcccC
Q 008749 119 GVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSH--------KL---PPNIR-TVLVDS-PEFLSLLSTQNQNDVVIS 185 (555)
Q Consensus 119 G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~--------~~---~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 185 (555)
|++++|+++.++.+++.++++.++++++++++.... .+ ..... ++..+. ..+.++...... ..
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 174 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE----PV 174 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCC----CC
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcccc----cc
Confidence 999999999999999999999999999999875321 00 01122 222222 122222211111 11
Q ss_pred CCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHH--HHHHHH
Q 008749 186 PPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFL--ALVRVV 263 (555)
Q Consensus 186 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~~~l 263 (555)
......++++++++|||||||.||+|+++|+++.+.+......+.. . +++++++.+|++|.+++. .++.++
T Consensus 175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~-~------~~d~~l~~~p~~h~~~~~~~~~~~~l 247 (539)
T 1mdb_A 175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWL-D------HSTVYLAALPMAHNYPLSSPGVLGVL 247 (539)
T ss_dssp CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTC-C------TTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred ccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCC-C------CCCEEEEeecccccchhhHHHHHHHH
Confidence 1234567999999999999999999999999999888777665543 2 789999999999999995 689999
Q ss_pred HcCCeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcE
Q 008749 264 AVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEI 343 (555)
Q Consensus 264 ~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l 343 (555)
..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......+++++|.+++||+++++++.+++.+.+ ++++
T Consensus 248 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~ 326 (539)
T 1mdb_A 248 YAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTL 326 (539)
T ss_dssp HTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEE
T ss_pred HhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999999999999999999999999999999999999887666666789999999999999999999999999 8999
Q ss_pred EcccCccccccccccCCCCcccCCCCCcccccCC-cEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccC
Q 008749 344 IQGYGLTECGGLASSMRDSEETKRHGSVGRLHEL-MEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVD 422 (555)
Q Consensus 344 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 422 (555)
++.||+||++..+.. .........+++|+|+++ .+++|+| +++++++.|+.|||+++||+++.||+++++.|.+.|.
T Consensus 327 ~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 404 (539)
T 1mdb_A 327 QQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFT 404 (539)
T ss_dssp EEEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBC
T ss_pred EEEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhcc
Confidence 999999997544332 222222345789999975 5899999 7799999999999999999999999999999999998
Q ss_pred CCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCC
Q 008749 423 SEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSI 502 (555)
Q Consensus 423 ~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~ 502 (555)
.++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++. +...
T Consensus 405 ~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~-~~~~ 483 (539)
T 1mdb_A 405 EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR-DEAP 483 (539)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-SSCC
T ss_pred CCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEEC-CCCC
Confidence 899999999999999999999999999999999999999999999999999999999999988889999999987 3467
Q ss_pred CHHHHHHHHHhc-CCCCCccceEEEccccCCCCCCcccHHHHHHHHhc
Q 008749 503 NEAQLMDFIAKQ-VAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALS 549 (555)
Q Consensus 503 ~~~~l~~~l~~~-l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 549 (555)
+.++|+++++++ |+.|++|..++++++||+|++||++|++|++.+.+
T Consensus 484 ~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 484 KAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp CHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 889999999998 99999999999999999999999999999998764
No 8
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.1e-80 Score=649.25 Aligned_cols=496 Identities=19% Similarity=0.277 Sum_probs=428.7
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSL 118 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 118 (555)
||+.++|.++++++|+ ++|+++. ++++||+||+++++++|++|.+ .|+++||+|+++++|++++++++|||+++
T Consensus 1 m~l~~~l~~~a~~~p~---~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~~ 74 (512)
T 3fce_A 1 MKLLEQIEKWAAETPD---QTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVKA 74 (512)
T ss_dssp CCHHHHHHHHHHHSTT---SEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHCCC---ceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 5899999999999999 9999998 7899999999999999999998 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCCCCeEEEeCCchhHHhhhccCCCCcccCCCCcCCCCCEEEE
Q 008749 119 GVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAVL 198 (555)
Q Consensus 119 G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 198 (555)
|++++|+++.++.+++.++++.+++++++++....... .....+....+..+........ ..+.....+++++++
T Consensus 75 G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i 149 (512)
T 3fce_A 75 GHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD---LPVRIVSEDNLKDIFFTHKGNT--PNPEHAVKGDENFYI 149 (512)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC---CSSEEEETHHHHHHHHHTTTCC--CCGGGSCCTTSEEEE
T ss_pred CCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc---cccceechhhhhhhcccccccC--CCccccCCCCCeEEE
Confidence 99999999999999999999999999999985443221 1122223333433332222111 122334678999999
Q ss_pred EcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeCC---C
Q 008749 199 LYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMER---F 275 (555)
Q Consensus 199 ~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~---~ 275 (555)
+|||||||.||+|+++|+++.+.+......+... +++++++.+|++|..++..++.++..|+++++.+. +
T Consensus 150 ~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~-------~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 222 (512)
T 3fce_A 150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQ-------TGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIA 222 (512)
T ss_dssp EEECC----CEEEEEEHHHHHHHHHHHHHHTTCC-------SSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHH
T ss_pred EECCCCCCCCceEEEehHHHHHHHHHHHHhcCCC-------CCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhh
Confidence 9999999999999999999999888777665532 78999999999999999889999999999999876 6
Q ss_pred CHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCccccccc
Q 008749 276 DFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGL 355 (555)
Q Consensus 276 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 355 (555)
++..+++.++++++|++.++|+++..+.........+++++|.+++||+++++++.+++.+.|+++++++.||+||++..
T Consensus 223 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~ 302 (512)
T 3fce_A 223 RPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVA 302 (512)
T ss_dssp SHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSC
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhh
Confidence 89999999999999999999999999988877777778999999999999999999999999999999999999999876
Q ss_pred cccCCCCc---ccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhccc---CCCCeeec
Q 008749 356 ASSMRDSE---ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETV---DSEGWLKT 429 (555)
Q Consensus 356 ~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~T 429 (555)
++...... ......++|+|.++++++|+| +++++++.|+.|||+++||+++.||+++++.+.+.| +.++||+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~T 381 (512)
T 3fce_A 303 VTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKT 381 (512)
T ss_dssp SEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEE
T ss_pred eeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeC
Confidence 65433222 123457899999999999999 789999999999999999999999999999999887 45779999
Q ss_pred CceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH----H
Q 008749 430 GDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINE----A 505 (555)
Q Consensus 430 GD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~----~ 505 (555)
||+|++ +||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++++|++.+....+. +
T Consensus 382 GDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~ 460 (512)
T 3fce_A 382 GDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTS 460 (512)
T ss_dssp EEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHH
T ss_pred CceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHH
Confidence 999999 89999999999999999999999999999999999999999999998888889999999877654443 5
Q ss_pred HHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcCCCCC
Q 008749 506 QLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSGNLSK 554 (555)
Q Consensus 506 ~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~~ 554 (555)
+++++++++|+.|++|..++++++||+|++||++|++|++.+.+.+-|+
T Consensus 461 ~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~ 509 (512)
T 3fce_A 461 AIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHH 509 (512)
T ss_dssp HHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-----
T ss_pred HHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccccc
Confidence 7999999999999999999999999999999999999999999887664
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.5e-79 Score=641.14 Aligned_cols=487 Identities=24% Similarity=0.358 Sum_probs=419.4
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSL 118 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 118 (555)
.|+.++|.++++++|+ ++|+.+...++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+++
T Consensus 2 ~tl~~~l~~~a~~~p~---~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPD---HCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CCHHHHHHHHHHHCTT---SEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCC---ceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 5799999999999999 9999987556899999999999999999998 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEE--cCCccccC-C--CCCeEEEeCCchhHHhhhccCCCC-cccCCCCcCCC
Q 008749 119 GVVVSPANPLGSTSEISHQLHLSKPSIAFA--TSRTSHKL-P--PNIRTVLVDSPEFLSLLSTQNQND-VVISPPAVVNQ 192 (555)
Q Consensus 119 G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 192 (555)
|++++|+++.++.+++.++++.++++++++ +....+.+ . ...+.+. +.++........ ..........+
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 152 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-----LGDLVRDGEPYSYGPPIEDPQREP 152 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE-----GGGTEETTEECCCSCCCCCCCCCT
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE-----ecchhhcCcccccCCccCCCCCCC
Confidence 999999999999999999999999999999 55432221 0 1222221 222222210000 00111134567
Q ss_pred CCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCC-CCCCCCCCCCEEEEecChhHHHHH-HHHHHHHHcCCeEE
Q 008749 193 SDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGA-NPAEPQPSGEVSLITLPLFHVFGF-LALVRVVAVSETAV 270 (555)
Q Consensus 193 ~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v 270 (555)
+++++++|||||||.||+|+++|+++.+.+......+... . +.+++++.+|++|.+|+ ..++.++..|++++
T Consensus 153 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~------~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 226 (504)
T 1t5h_X 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG------RHNVVLGLMPLYHVVGFFAVLVAALALDGTYV 226 (504)
T ss_dssp TSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSS------TTCEEEECSCTTSHHHHTTTHHHHHHTTCEEE
T ss_pred CCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCC------CCceEEeecchhhcchHHHHHHHHHHcCceEE
Confidence 9999999999999999999999999998887766544321 2 78999999999999998 67889999999999
Q ss_pred EeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCccc--CCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccC
Q 008749 271 FMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELT--KKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYG 348 (555)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG 348 (555)
+.+.+++..+++.++++++|+++++|+++..+.+.... ...+++++|.+++||+++++++.++|.+.+ ++.+++.||
T Consensus 227 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG 305 (504)
T 1t5h_X 227 VVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYG 305 (504)
T ss_dssp ECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeec
Confidence 99999999999999999999999999999999886522 345688999999999999999999999999 789999999
Q ss_pred ccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCC---cccCCCCccEEEEe-CCcccccccCCchhhhcccCCC
Q 008749 349 LTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTG---DALSPAQKGELWLR-GPTIMKGYIGDNKATIETVDSE 424 (555)
Q Consensus 349 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~---~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~ 424 (555)
+||++..... . ....+++|+|.++++++|+|+ ++ ++++.|+.|||+++ |+.++.||+++++.+.+.| .+
T Consensus 306 ~TE~~~~~~~-~----~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~ 378 (504)
T 1t5h_X 306 TTEAMNSLYM-R----QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QD 378 (504)
T ss_dssp ETTTEEEEEE-E----SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ET
T ss_pred cccccccccc-c----CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cC
Confidence 9999432221 1 235678999999999999994 45 89999999999999 8999999999999999999 68
Q ss_pred CeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH
Q 008749 425 GWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINE 504 (555)
Q Consensus 425 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~ 504 (555)
|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.
T Consensus 379 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~ 458 (504)
T 1t5h_X 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458 (504)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCH
T ss_pred CccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999988877889
Q ss_pred HHHHHHHHh-cCCCCCccceEEEccccCCCCCCcccHHHHHHHHh
Q 008749 505 AQLMDFIAK-QVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHAL 548 (555)
Q Consensus 505 ~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~ 548 (555)
+++++++++ +|+.|++|+.++++++||+|++||++|++|++.+.
T Consensus 459 ~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 459 DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred HHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 999999998 99999999999999999999999999999999875
No 10
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.9e-79 Score=657.84 Aligned_cols=496 Identities=22% Similarity=0.300 Sum_probs=424.4
Q ss_pred CHHHHhhcccccCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 008749 40 SVTQFTLSILHKSATTTAAPFLMNA----ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSL 115 (555)
Q Consensus 40 ~~~~~~~~~~~~~p~~~~~~a~~~~----~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 115 (555)
++.++|.++++++|+ ++|+++. +.++++||+||+++++++|+.|++ +|+++||+|+++++|++++++++|||
T Consensus 77 ~~~~~l~~~a~~~pd---~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~ 152 (652)
T 1pg4_A 77 LAANCLDRHLQENGD---RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLAC 152 (652)
T ss_dssp HHHHHTGGGHHHHTT---SEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC---ceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 456788889999999 9999973 235789999999999999999998 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCcccc----------------CC--CCCeEEEeCCc---------
Q 008749 116 LSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHK----------------LP--PNIRTVLVDSP--------- 168 (555)
Q Consensus 116 ~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~----------------~~--~~~~~~~~~~~--------- 168 (555)
+++|++++|+++.++.+++.+++++++++++|+++..... .. ....++.++..
T Consensus 153 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 232 (652)
T 1pg4_A 153 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG 232 (652)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBT
T ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCC
Confidence 9999999999999999999999999999999998754321 00 11124444321
Q ss_pred ---hhHHhhhccCCCCcccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEE
Q 008749 169 ---EFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSL 245 (555)
Q Consensus 169 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (555)
.|.++...... ........++++++|+|||||||.||||+++|++++.............. ++|+++
T Consensus 233 ~~~~~~~~~~~~~~----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~------~~d~~l 302 (652)
T 1pg4_A 233 RDLWWRDLIEKASP----EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH------PGDIYW 302 (652)
T ss_dssp TEEEHHHHHTTSCS----CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCC------TTCEEE
T ss_pred CceeHHHHHhhcCC----CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCC------CCCEEE
Confidence 23444332211 12233456799999999999999999999999998876643332222233 789999
Q ss_pred EecChhHHHHH-HHHHHHHHcCCeEEEeCC----CCHHHHHHHHhhcCCceEecchHHHHHHHhCcc--cCCCCCCCceE
Q 008749 246 ITLPLFHVFGF-LALVRVVAVSETAVFMER----FDFETMLKTVDKYKLTSMPVSPPLVVALTKSEL--TKKYDLSSLQY 318 (555)
Q Consensus 246 ~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~ 318 (555)
+..|++|++|+ +.++.++..|+++++.+. +++..+++.++++++|+++++|++++.|.+... ....++++||.
T Consensus 303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~ 382 (652)
T 1pg4_A 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRI 382 (652)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCE
T ss_pred EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEE
Confidence 99999999999 778899999999999874 588999999999999999999999999988764 33456899999
Q ss_pred EEEccCCCCHHHHHHHHHHCC--CCcEEcccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCc
Q 008749 319 LSCGGAPLGKEVTDKFKEKFP--SVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQK 396 (555)
Q Consensus 319 v~~~G~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 396 (555)
+++|||++++++.+++.+.++ ++++++.||+||++..++...........+++|+|++|++++|+| +++++++.|+.
T Consensus 383 i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~ 461 (652)
T 1pg4_A 383 LGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATE 461 (652)
T ss_dssp EEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEE
T ss_pred EEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCce
Confidence 999999999999999999883 289999999999987666533222334678999999999999999 67999999999
Q ss_pred cEEEEeC--CcccccccCCchhhhcccC--CCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCC
Q 008749 397 GELWLRG--PTIMKGYIGDNKATIETVD--SEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPE 472 (555)
Q Consensus 397 Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~ 472 (555)
|||+++| |+++.||+++++.+...+. .+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.++|+
T Consensus 462 GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~ 541 (652)
T 1pg4_A 462 GNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPK 541 (652)
T ss_dssp EEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTT
T ss_pred EEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCC
Confidence 9999999 7999999999988877652 37899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeeeCCCCCceEEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhc
Q 008749 473 IADAAVIPYPDEEAGQIPMAFVVRKPGSSIN---EAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALS 549 (555)
Q Consensus 473 i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 549 (555)
|.+++|++.+++..++.++++|++.++...+ .++|+++++++|+.|++|..++++++||+|++||++|++|++.+.+
T Consensus 542 V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 621 (652)
T 1pg4_A 542 IAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 621 (652)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred cceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence 9999999999988889999999998775554 4789999999999999999999999999999999999999999987
Q ss_pred C
Q 008749 550 G 550 (555)
Q Consensus 550 ~ 550 (555)
.
T Consensus 622 ~ 622 (652)
T 1pg4_A 622 D 622 (652)
T ss_dssp C
T ss_pred C
Confidence 6
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=9.3e-80 Score=651.24 Aligned_cols=510 Identities=20% Similarity=0.311 Sum_probs=411.4
Q ss_pred eeecCCCCCCCCCCCCCCCHH-HHhhcccccCCCCCCCcEEEEC---CCCceecHHHHHHHHHHHHHHHHhhcCCCCCCE
Q 008749 22 TFHSVRPKIPLPPSSQPLSVT-QFTLSILHKSATTTAAPFLMNA---ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDV 97 (555)
Q Consensus 22 ~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~p~~~~~~a~~~~---~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~ 97 (555)
.|......+.++.+ ...|+. ++|.++++++|+ ++|+++. +.++++||+||.++++++|++|++ +|+++||+
T Consensus 39 ~~~~~~~~~~~~~~-~~~n~~~~~l~~~a~~~pd---~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~ 113 (580)
T 3etc_A 39 SYEDFQENFKILVP-ENFNFAYDVVDVYARDSPE---KLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDY 113 (580)
T ss_dssp SHHHHHHHCCBCCC-SSCCHHHHTHHHHHHHCTT---CEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCE
T ss_pred CHHHHHhcCCCCCc-ccchHHHHHHHHHHhhCCC---CEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCE
Confidence 34444444555543 346776 999999999999 8999852 335799999999999999999998 89999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCcc--ccCC-------CC-CeEEEeCC
Q 008749 98 AFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTS--HKLP-------PN-IRTVLVDS 167 (555)
Q Consensus 98 V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~-------~~-~~~~~~~~ 167 (555)
|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+.. ..+. .. ...+.++.
T Consensus 114 V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (580)
T 3etc_A 114 VMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGG 193 (580)
T ss_dssp EEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESS
T ss_pred EEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999987653 2111 11 23444432
Q ss_pred c------hhHHhhhccCCCCcccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCC
Q 008749 168 P------EFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSG 241 (555)
Q Consensus 168 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
. ++.+...................++++++|+|||||||.||+|.++|.++...+........ .. ++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-~~------~~ 266 (580)
T 3etc_A 194 DVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQN-VE------DD 266 (580)
T ss_dssp SCCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSC-CC------TT
T ss_pred ccccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhC-CC------CC
Confidence 2 23333333222110001112467899999999999999999999999998877665444333 22 78
Q ss_pred CEEEEecChhHHHHHH-HHHHHHHcCCeEEEe--CCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceE
Q 008749 242 EVSLITLPLFHVFGFL-ALVRVVAVSETAVFM--ERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQY 318 (555)
Q Consensus 242 ~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~ 318 (555)
+++++..|++|..+++ .++.++..|+++++. ..+++..+++.++++++|+++++|++++.|.+.. ....++++||.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~ 345 (580)
T 3etc_A 267 GLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKY 345 (580)
T ss_dssp CEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCE
T ss_pred ceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceE
Confidence 9999999999988875 577889999999887 4689999999999999999999999999998863 34456899999
Q ss_pred EEEccCCCCHHHHHHHHHHCCCCcEEcccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccE
Q 008749 319 LSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGE 398 (555)
Q Consensus 319 v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Ge 398 (555)
+++|||++++++.++|.+.+ ++++++.||+||++..++.... .....+++|+|+++++++|+| +++++++.|+.||
T Consensus 346 i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GE 421 (580)
T 3etc_A 346 AVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGE 421 (580)
T ss_dssp EEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEE
T ss_pred EEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCCC--CCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceE
Confidence 99999999999999999988 8999999999999876655332 244678999999999999999 6799999999999
Q ss_pred EEEeC-----CcccccccCCchhhhcccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCc
Q 008749 399 LWLRG-----PTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEI 473 (555)
Q Consensus 399 l~v~~-----~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i 473 (555)
|+++| ++++.||+++++.|.+.| .+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|
T Consensus 422 l~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V 500 (580)
T 3etc_A 422 IVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAV 500 (580)
T ss_dssp EEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTE
T ss_pred EEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCe
Confidence 99997 789999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeCCCCCceEEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhc
Q 008749 474 ADAAVIPYPDEEAGQIPMAFVVRKPGSSIN---EAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALS 549 (555)
Q Consensus 474 ~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 549 (555)
.+++|++++++..++.+.++|++.++...+ .++|+++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 501 ~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 501 LECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred eeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 999999999999999999999998775544 3689999999999999999999999999999999999999998765
No 12
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=6e-79 Score=637.73 Aligned_cols=493 Identities=20% Similarity=0.278 Sum_probs=430.1
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSL 118 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 118 (555)
+|+.++|.++++++|+ ++|+++. ++++||+||+++++++|++|.++.|.++||+|+++++|++++++++|||+++
T Consensus 1 m~l~~~l~~~a~~~p~---~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQ---TDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp CCHHHHHHHHHHHSTT---SEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCC---CeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 5899999999999999 9999998 7899999999999999999998458899999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCcccc-CCCCCeEEEeCCchhHHhhhccCCCCcccCCCCcCCCCCEEE
Q 008749 119 GVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHK-LPPNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAV 197 (555)
Q Consensus 119 G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 197 (555)
|++++|+++.++.+++.++++.++++++|++...... .......+ .+.++....... ........++++++
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~a~ 147 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV-----SAEELLENEGGS---VSQDQWVKEHETFY 147 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEE-----EHHHHHTSCSCC---CCGGGSCCTTSEEE
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccccccee-----cHhhhhccccCC---ccccccCCCCCeEE
Confidence 9999999999999999999999999999997654322 22222222 223333322211 11223456789999
Q ss_pred EEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeCC---
Q 008749 198 LLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMER--- 274 (555)
Q Consensus 198 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~--- 274 (555)
|+|||||||.||+|+++|+++.+.+.+....+... +++++++.+|++|.+++..++.++..|+++++.+.
T Consensus 148 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-------~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~ 220 (511)
T 3e7w_A 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS-------GGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAV 220 (511)
T ss_dssp EEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTT-------TTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHH
T ss_pred EEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCC-------ccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhh
Confidence 99999999999999999999999888776665432 78999999999999999889999999999999875
Q ss_pred CCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCcccccc
Q 008749 275 FDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGG 354 (555)
Q Consensus 275 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~ 354 (555)
+++..+++.++++++|++.++|+++..+..........++++|.+++||+++++++.+++.+.|+++++++.||+||++.
T Consensus 221 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~ 300 (511)
T 3e7w_A 221 NKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATV 300 (511)
T ss_dssp HSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSS
T ss_pred cCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchhee
Confidence 68999999999999999999999999999887766777899999999999999999999999999999999999999987
Q ss_pred ccccCCCCc---ccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccC---CCCeee
Q 008749 355 LASSMRDSE---ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVD---SEGWLK 428 (555)
Q Consensus 355 ~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~~~~~ 428 (555)
.++...... ......++|+|+++++++|+| +++++++.|+.|||+++|+.++.||+++++.+.+.|. ...||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~ 379 (511)
T 3e7w_A 301 AVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYR 379 (511)
T ss_dssp CSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEE
T ss_pred eeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEe
Confidence 766432221 123456799999999999999 6799999999999999999999999999999998882 223799
Q ss_pred cCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH----
Q 008749 429 TGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINE---- 504 (555)
Q Consensus 429 TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~---- 504 (555)
|||+|++ +||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++...+.
T Consensus 380 TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~ 458 (511)
T 3e7w_A 380 TGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLT 458 (511)
T ss_dssp EEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHH
T ss_pred CCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHH
Confidence 9999999 69999999999999999999999999999999999999999999998888899999999987655443
Q ss_pred HHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcCCCC
Q 008749 505 AQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSGNLS 553 (555)
Q Consensus 505 ~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~ 553 (555)
++++++++++|+.|++|..++++++||+|++||++|++|++.+.+.+-+
T Consensus 459 ~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 507 (511)
T 3e7w_A 459 SAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHH 507 (511)
T ss_dssp HHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhccc
Confidence 6799999999999999999999999999999999999999998765433
No 13
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.6e-80 Score=692.58 Aligned_cols=524 Identities=37% Similarity=0.613 Sum_probs=358.5
Q ss_pred CCCCCceeecCCCCCCCCCCCCCCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCC
Q 008749 16 FCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKN 95 (555)
Q Consensus 16 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~g 95 (555)
.+.....|.+..++.++|. ..|+.++|.++++++|+ ++|+++..+++++||+||.++++++|+.|++ +|+++|
T Consensus 41 ~~~~~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~pd---~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~g 113 (979)
T 3tsy_A 41 NNNSDVIFRSKLPDIYIPN---HLSLHDYIFQNISEFAT---KPCLINGPTGHVYTYSDVHVISRQIAANFHK-LGVNQN 113 (979)
T ss_dssp ----CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGTTT---SEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTT
T ss_pred CCCCCceeecCCCCCCCCC---CCCHHHHHHHHHHhCCC---CeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCc
Confidence 3445667777767666664 48999999999999999 9999997667899999999999999999999 899999
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCC-----CCeEEEeCCc--
Q 008749 96 DVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPP-----NIRTVLVDSP-- 168 (555)
Q Consensus 96 d~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-----~~~~~~~~~~-- 168 (555)
|+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++....+.+.. ....+.++..
T Consensus 114 d~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (979)
T 3tsy_A 114 DVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNES 193 (979)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCccc
Confidence 999999999999999999999999999999999999999999999999999999876655432 3334444432
Q ss_pred --------hhHHhhhccCCCCcccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCC
Q 008749 169 --------EFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPS 240 (555)
Q Consensus 169 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.+.++....... ..........++++++|+|||||||.||+|+++|+++.+.+......... .....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~---~~~~~~ 269 (979)
T 3tsy_A 194 VPIPEGCLRFTELTQSTTEA-SEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP---NLYFHS 269 (979)
T ss_dssp SCCCTTEEEGGGTSSCCSGG-GGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSC---SSCCCS
T ss_pred ccCCcccccHHHHhhccccc-cccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcc---cccCCC
Confidence 122222211110 01223345678999999999999999999999999999887665432110 000117
Q ss_pred CCEEEEecChhHHHHH-HHHHHHHHcCCeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEE
Q 008749 241 GEVSLITLPLFHVFGF-LALVRVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYL 319 (555)
Q Consensus 241 ~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v 319 (555)
++++++.+|++|.+++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......+++++|.+
T Consensus 270 ~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 349 (979)
T 3tsy_A 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVV 349 (979)
T ss_dssp SCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEE
T ss_pred CCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEE
Confidence 8999999999999999 567889999999999999999999999999999999999999999999887777789999999
Q ss_pred EEccCCCCHHHHHHHHHHCCCCcEEcccCccccccccccCC---CCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCc
Q 008749 320 SCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGLASSMR---DSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQK 396 (555)
Q Consensus 320 ~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 396 (555)
++||+++++++.+++.+.||++++++.||+||++.+++.+. ........+++|+|+++++++|+|++++++++.|+.
T Consensus 350 ~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~ 429 (979)
T 3tsy_A 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP 429 (979)
T ss_dssp EESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC
T ss_pred EEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc
Confidence 99999999999999999999999999999999987655432 222334567899999999999999889999999999
Q ss_pred cEEEEeCCcccccccCCchhhhcccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceE
Q 008749 397 GELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADA 476 (555)
Q Consensus 397 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~ 476 (555)
|||+|+|+.++.||+++++.|.+.|+.++||+|||+|++++||++++.||+||+||++|++|+|.|||++|.++|+|.++
T Consensus 430 GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~ 509 (979)
T 3tsy_A 430 GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDV 509 (979)
T ss_dssp EEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------
T ss_pred cEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceE
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcC
Q 008749 477 AVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSG 550 (555)
Q Consensus 477 ~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 550 (555)
+|++.+++..++.++++|+..++...+.++++++++++|+.|++|..++++++||+|++||++|++|++.+.++
T Consensus 510 ~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 510 AVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 99999988888999999998887778889999999999999999999999999999999999999999998765
No 14
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.7e-80 Score=653.64 Aligned_cols=493 Identities=21% Similarity=0.291 Sum_probs=336.2
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSL 118 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 118 (555)
.|+.++|.++++++|+ ++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+++
T Consensus 30 ~tl~~~l~~~a~~~p~---~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 30 QPLTRILTVGVQSHPH---SLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp CCTTHHHHHHHHHCTT---SEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCC---ceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 7999999999999999 9999998 8899999999999999999998 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCcccc------------CCCCCeEEEeCCc----hhHHhhhccCCCCc
Q 008749 119 GVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHK------------LPPNIRTVLVDSP----EFLSLLSTQNQNDV 182 (555)
Q Consensus 119 G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 182 (555)
|++++|+++.++.+++.++++.+++++++++...... .......+..+.. .+.++.......
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 181 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAET-- 181 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSS--
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccccc--
Confidence 9999999999999999999999999999998765311 1111123333321 233333222211
Q ss_pred ccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHH--HHH
Q 008749 183 VISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFL--ALV 260 (555)
Q Consensus 183 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~ 260 (555)
........++++++++|||||||.||+|+++|+++.+.+......+... +++++++.+|++|.+++. .++
T Consensus 182 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-------~~d~~l~~~p~~h~~~~~~~~~~ 253 (544)
T 3o83_A 182 -FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN-------SNTRLLCALPAPHNFMLSSPGAL 253 (544)
T ss_dssp -CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCC-------TTCEEEECSCTTSHHHHHSSHHH
T ss_pred -ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCC-------CCCeEEEecCcceEeecchHHHH
Confidence 1122345689999999999999999999999999999988877765532 789999999999999984 588
Q ss_pred HHHHcCCeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCC
Q 008749 261 RVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPS 340 (555)
Q Consensus 261 ~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~ 340 (555)
.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......+++++|.+++||+++++++.+++.+.+ +
T Consensus 254 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~ 332 (544)
T 3o83_A 254 GVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-N 332 (544)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-C
T ss_pred HHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-C
Confidence 999999999999999999999999999999999999999999887765555678999999999999999999999998 8
Q ss_pred CcEEcccCccccccccccCCCCcccCCCCCccccc-CCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhc
Q 008749 341 VEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLH-ELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIE 419 (555)
Q Consensus 341 ~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 419 (555)
+++++.||+||++..+... ........+++|+|+ ++.+++|+| +++++++.|+.|||+++||+++.||+++++.+.+
T Consensus 333 ~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 410 (544)
T 3o83_A 333 CKLQQVFGMAEGLVNYTRL-DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQ 410 (544)
T ss_dssp SEEEEEEECTTSCEEECCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHH
T ss_pred CcEEeeeccccccceeecC-CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhh
Confidence 9999999999987654432 222223456889996 899999999 8899999999999999999999999999999999
Q ss_pred ccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC
Q 008749 420 TVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPG 499 (555)
Q Consensus 420 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~ 499 (555)
.|+.++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++++++..+
T Consensus 411 ~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~- 489 (544)
T 3o83_A 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN- 489 (544)
T ss_dssp HBCTTCCEEEEEEEEECTTSCEEEEEEEC---------------------------------------------------
T ss_pred hCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-
Confidence 9988999999999999999999999999999999999999999999999999999999999999888999999999875
Q ss_pred CCCCHHHHHHHHHh-cCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcCC
Q 008749 500 SSINEAQLMDFIAK-QVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSGN 551 (555)
Q Consensus 500 ~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 551 (555)
...+.+++++++++ +|+.|++|..++++++||+|++||++|++|++++.+..
T Consensus 490 ~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 490 PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp -----------------------------------------------------
T ss_pred CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 45677889999998 79999999999999999999999999999999987754
No 15
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.1e-78 Score=637.88 Aligned_cols=495 Identities=21% Similarity=0.321 Sum_probs=416.0
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSL 118 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 118 (555)
.|+.++|.++++++|+ ++|+.+. ++++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||+++
T Consensus 4 ~~l~~~l~~~a~~~p~---~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQAD---FPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CCHHHHHHHHHHHSTT---SEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCC---CcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 6899999999999999 9999998 7899999999999999999998 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCCCCeEEEeCCchhHHhhhccCCCCcccCCCCcCCCCCEEEE
Q 008749 119 GVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAVL 198 (555)
Q Consensus 119 G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 198 (555)
|++++|+++.++.+++.++++.+++++++++++....+. ....+.+. ++......... ........+++++++
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~d~a~i 150 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE-GISLVSLS--EIESAKLAEMP----YERTHSVKGDDNYYI 150 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-TSEEEEHH--HHHHHHHHTCC----CCCSSCCCTTSEEEE
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc-cCcccchh--hhhhcccccCC----cccCCCCCCCCcEEE
Confidence 999999999999999999999999999999877654432 22232221 12111111111 222345678999999
Q ss_pred EcCCCCCCccceeeechHHHHHHHHHHhhhh-cCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeCC---
Q 008749 199 LYSSGTTGKVKGVLLTHRNIISLVASFHHVE-YGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMER--- 274 (555)
Q Consensus 199 ~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~--- 274 (555)
+|||||||.||+|+++|+++.+.+.+..... .... +.++++...|++|..++..++.++..|+++++.+.
T Consensus 151 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~ 224 (521)
T 3l8c_A 151 IFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVP------KQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELV 224 (521)
T ss_dssp EECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCC------SSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGT
T ss_pred EEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCC------CCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHh
Confidence 9999999999999999999998777655431 1122 78899999999999999888999999999999875
Q ss_pred CCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCcccccc
Q 008749 275 FDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGG 354 (555)
Q Consensus 275 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~ 354 (555)
.++..+++.+.+++++++.++|+++..+.........+++++|.+++||+++++++.+++.+.|+++++++.||+||++.
T Consensus 225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~ 304 (521)
T 3l8c_A 225 ADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV 304 (521)
T ss_dssp TCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred hCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhh
Confidence 38999999999999999999999999998887666677899999999999999999999999999999999999999987
Q ss_pred ccccCCCCc---ccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhccc---CCCCeee
Q 008749 355 LASSMRDSE---ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETV---DSEGWLK 428 (555)
Q Consensus 355 ~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~ 428 (555)
+++.+.... .....+++|+|+++++++|+| +++++++.|+.|||+++||+++.||+++++.+.+.| +.++||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~ 383 (521)
T 3l8c_A 305 ALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYH 383 (521)
T ss_dssp CSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEE
T ss_pred hhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeee
Confidence 665432221 123456899999999999999 779999999999999999999999999999999887 5678999
Q ss_pred cCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCC-CCceEEEEEEeCCCCCCC----
Q 008749 429 TGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEE-AGQIPMAFVVRKPGSSIN---- 503 (555)
Q Consensus 429 TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~-~~~~l~~~v~~~~~~~~~---- 503 (555)
|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++..++. .++.++++|++.++....
T Consensus 384 TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 463 (521)
T 3l8c_A 384 TGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRE 463 (521)
T ss_dssp EEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSH
T ss_pred CCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccc
Confidence 999999999999999999999999999999999999999999999999999887544 357889999988764321
Q ss_pred ---HHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcCCCC
Q 008749 504 ---EAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSGNLS 553 (555)
Q Consensus 504 ---~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~ 553 (555)
.++|+++++++|+.|++|..++++++||+|++||+||++|++.+.+..-+
T Consensus 464 ~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~ 516 (521)
T 3l8c_A 464 LELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGH 516 (521)
T ss_dssp HHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-----
T ss_pred hhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcc
Confidence 57899999999999999999999999999999999999999999876543
No 16
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.5e-78 Score=649.16 Aligned_cols=497 Identities=21% Similarity=0.322 Sum_probs=418.7
Q ss_pred CHHHHhhcccccCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHHH-hhcCCCCCCEEEEEcCCCCcHHHHHHH
Q 008749 40 SVTQFTLSILHKSATTTAAPFLMNA----ATGRRLTYPEFLRQTNSLTLSLQ-KHYSLSKNDVAFILSPSSFEIPVLYFS 114 (555)
Q Consensus 40 ~~~~~~~~~~~~~p~~~~~~a~~~~----~~~~~~Ty~el~~~v~~la~~L~-~~~g~~~gd~V~l~~~~~~~~~~~~lA 114 (555)
++.++|.++++++|+ ++|+++. +.++++||+||+++++++|+.|+ + +|+++||+|+++++|++++++++||
T Consensus 83 ~~~~~l~~~a~~~pd---~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~e~v~a~lA 158 (663)
T 1ry2_A 83 ACYNCVDRHALKTPN---KKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVPEAIITLLA 158 (663)
T ss_dssp HHHHHTHHHHTTCTT---SEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC---ceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 466788888899999 9999973 24579999999999999999999 8 8999999999999999999999999
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCcccc-------------CC--CCC-eEEEeCCc----------
Q 008749 115 LLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHK-------------LP--PNI-RTVLVDSP---------- 168 (555)
Q Consensus 115 ~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-------------~~--~~~-~~~~~~~~---------- 168 (555)
|+++|++++|+++.++.+++.+++++++++++|+++..... +. ... .++.++..
T Consensus 159 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 238 (663)
T 1ry2_A 159 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAP 238 (663)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSS
T ss_pred HHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCC
Confidence 99999999999999999999999999999999998764321 10 112 23433321
Q ss_pred ---hhHHhhhccCCCCcccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEE
Q 008749 169 ---EFLSLLSTQNQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSL 245 (555)
Q Consensus 169 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (555)
.|.++...... ........++++++|+|||||||.||||+++|.+++.............. ++|+++
T Consensus 239 ~~~~~~~~~~~~~~----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~------~~d~~~ 308 (663)
T 1ry2_A 239 RDLDWATEKKKYKT----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTH------QEDVFF 308 (663)
T ss_dssp SEEEHHHHHTTSCS----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCC------SSCEEE
T ss_pred ccccHHHHHhhcCC----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCC------CCcEEE
Confidence 13333322111 12233456799999999999999999999999998766644333222233 789999
Q ss_pred EecChhHHHHH-HHHHHHHHcCCeEEEeCC----CCHHHHHHHHhhcCCceEecchHHHHHHHhCcc--cCCCCCCCceE
Q 008749 246 ITLPLFHVFGF-LALVRVVAVSETAVFMER----FDFETMLKTVDKYKLTSMPVSPPLVVALTKSEL--TKKYDLSSLQY 318 (555)
Q Consensus 246 ~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~ 318 (555)
+..|++|+.|. +.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.+.+... ....++++||.
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~ 388 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRC 388 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCE
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEE
Confidence 99999999999 778899999999999864 588999999999999999999999999988754 23456899999
Q ss_pred EEEccCCCCHHHHHHHHHHCC--CCcEEcccCccccccccccCCC-CcccCCCCCcccccCCcEEEEEcCCCCcccCC-C
Q 008749 319 LSCGGAPLGKEVTDKFKEKFP--SVEIIQGYGLTECGGLASSMRD-SEETKRHGSVGRLHELMEAKVVDPVTGDALSP-A 394 (555)
Q Consensus 319 v~~~G~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g 394 (555)
+++|||++++++.+++.+.++ ++++++.||+||++..++.... .......+++|+|++|++++|+|++++++++. |
T Consensus 389 i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g 468 (663)
T 1ry2_A 389 LGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH 468 (663)
T ss_dssp EEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS
T ss_pred EEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCC
Confidence 999999999999999999883 3899999999999876655332 22234678999999999999999658999988 9
Q ss_pred CccEEEEeC--CcccccccCCchhhhcccC--CCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcC
Q 008749 395 QKGELWLRG--PTIMKGYIGDNKATIETVD--SEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSN 470 (555)
Q Consensus 395 ~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~ 470 (555)
+.|||+++| |+++.||+++++.+.+.+. .+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.++
T Consensus 469 ~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~ 548 (663)
T 1ry2_A 469 AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIED 548 (663)
T ss_dssp CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSS
T ss_pred cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhC
Confidence 999999999 5899999999998887763 378999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEeeeCCCCCceEEEEEEeCCCCC---C-C------HHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccH
Q 008749 471 PEIADAAVIPYPDEEAGQIPMAFVVRKPGSS---I-N------EAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILR 540 (555)
Q Consensus 471 ~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r 540 (555)
|.|.+++|++.+++..++.++++|+++++.. . + .++|+++++++|++|++|..|+++++||+|++||++|
T Consensus 549 p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R 628 (663)
T 1ry2_A 549 PIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMR 628 (663)
T ss_dssp TTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCH
T ss_pred CCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchH
Confidence 9999999999998888899999999986643 2 2 5789999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 008749 541 RELVNHALSG 550 (555)
Q Consensus 541 ~~l~~~~~~~ 550 (555)
++|++.+.+.
T Consensus 629 ~~L~~~~~~~ 638 (663)
T 1ry2_A 629 RILRKILAGE 638 (663)
T ss_dssp HHHHHSCC--
T ss_pred HHHHHHHcCC
Confidence 9999988765
No 17
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.2e-79 Score=643.58 Aligned_cols=490 Identities=25% Similarity=0.380 Sum_probs=383.4
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEEC--CCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNA--ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSL 115 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~--~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 115 (555)
+.|+.++|.++++++|+ ++|++.. +.++++||+||+++++++|+.|++ +|+++||+|+++++|++++++++|||
T Consensus 17 ~~~l~~~l~~~a~~~p~---~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 17 ELNLWDFLERAAALFGR---KEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCCTHHHHHHHHHHSTT---CEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC---ceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 37999999999999999 8999852 235799999999999999999998 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCC------CCC-eEEEeCCc------hhHHhhhccCCCCc
Q 008749 116 LSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLP------PNI-RTVLVDSP------EFLSLLSTQNQNDV 182 (555)
Q Consensus 116 ~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~------~~~-~~~~~~~~------~~~~~~~~~~~~~~ 182 (555)
+++|++++|+++.++.+++.++++.++++++|+++.....+. ... ..+.++.. .+.++......
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 169 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD--- 169 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCC---
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCC---
Confidence 999999999999999999999999999999999876432211 112 23333321 23333222111
Q ss_pred ccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHh--hhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHH
Q 008749 183 VISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFH--HVEYGANPAEPQPSGEVSLITLPLFHVFGFLALV 260 (555)
Q Consensus 183 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~ 260 (555)
.....++++++|+|||||||.||+|+++|+++.+...... ..+. .. +++++++.+|++|.+++..++
T Consensus 170 ----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~------~~d~~l~~~p~~h~~~~~~~~ 238 (541)
T 1v25_A 170 ----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA-LS------EKDVVLPVVPMFHVNAWCLPY 238 (541)
T ss_dssp ----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTC-CC------TTCEEEECSCTTSHHHHTHHH
T ss_pred ----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhccccc-CC------CCCEEEEeccchhhhHHHHHH
Confidence 1345678999999999999999999999999987765432 1111 22 789999999999999997778
Q ss_pred HHHHcCCeEEEeCC-CCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCC
Q 008749 261 RVVAVSETAVFMER-FDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFP 339 (555)
Q Consensus 261 ~~l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~ 339 (555)
.++..|+++++.+. +++..+++.++++++|+++++|+++..|.+.......+++++|.+++||+++++++.+++ +.+
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~- 316 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM- 316 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-
T ss_pred HHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-
Confidence 89999999999874 799999999999999999999999999988766555668999999999999999999999 667
Q ss_pred CCcEEcccCccccccccccCCCCcc---------cCCCCCcccccCCcEEEEEcCCCCcccCC--CCccEEEEeCCcccc
Q 008749 340 SVEIIQGYGLTECGGLASSMRDSEE---------TKRHGSVGRLHELMEAKVVDPVTGDALSP--AQKGELWLRGPTIMK 408 (555)
Q Consensus 340 ~~~l~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~ 408 (555)
++++++.||+||++.+++....... ....+++|+|+++++++|+| +++++++. ++.|||+++||.++.
T Consensus 317 g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~ 395 (541)
T 1v25_A 317 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITG 395 (541)
T ss_dssp TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBS
T ss_pred CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhc
Confidence 8999999999999877665432210 12357899999999999999 66888874 368999999999999
Q ss_pred cccCCchhhhcccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCc
Q 008749 409 GYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQ 488 (555)
Q Consensus 409 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~ 488 (555)
||+++++.|.+.|..+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++
T Consensus 396 GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~ 475 (541)
T 1v25_A 396 GYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 475 (541)
T ss_dssp SCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSE
T ss_pred cccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCc
Confidence 99999999999998799999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eEEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCccceEEEccccCCCCCCcccHHHHHHHHhc
Q 008749 489 IPMAFVVRKPGSSINEAQLMDFIAK-QVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALS 549 (555)
Q Consensus 489 ~l~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 549 (555)
.++++|++. +...+.+++++++++ +|+.|++|..++++++||+|++||++|++|++.+.+
T Consensus 476 ~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 476 RPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp EEEECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred eEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 999999876 445677889999999 899999999999999999999999999999998765
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.2e-77 Score=641.15 Aligned_cols=488 Identities=22% Similarity=0.316 Sum_probs=426.3
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLS 117 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 117 (555)
..|+.++|.++++ |+ ++|+++. ++++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||++
T Consensus 26 ~~~l~~~~~~~a~--pd---~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~ 97 (617)
T 3rg2_A 26 DLPLTDILTRHAA--SD---SIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLK 97 (617)
T ss_dssp CCCTTHHHHTTTT--CC---SEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhhC--CC---CeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 3899999999998 88 9999998 8899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccC-----------CCCCeE-EEeCCc---hhHHhhhccCCCCc
Q 008749 118 LGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKL-----------PPNIRT-VLVDSP---EFLSLLSTQNQNDV 182 (555)
Q Consensus 118 ~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~-----------~~~~~~-~~~~~~---~~~~~~~~~~~~~~ 182 (555)
+|+++||+++.++.+++.++++.+++++++++....... ...... ...+.. .+.+.......
T Consensus 98 aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 174 (617)
T 3rg2_A 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAE--- 174 (617)
T ss_dssp HTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCS---
T ss_pred cCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhccccc---
Confidence 999999999999999999999999999999987653111 012222 222222 12333222221
Q ss_pred ccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHH--HHH
Q 008749 183 VISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFL--ALV 260 (555)
Q Consensus 183 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~ 260 (555)
........++++++++|||||||.||+|+++|+++.+.+......+... +++++++.+|++|.+++. .++
T Consensus 175 -~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~ 246 (617)
T 3rg2_A 175 -DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFT-------QQTRYLCAIPAAHNYAMSSPGSL 246 (617)
T ss_dssp -SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCC-------TTCEEEECSCTTSHHHHHSSHHH
T ss_pred -ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCC-------CcceEEEeccchhhhhhhHHHHH
Confidence 1223345679999999999999999999999999999988877766533 789999999999999884 689
Q ss_pred HHHHcCCeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCC--CCCCCceEEEEccCCCCHHHHHHHHHHC
Q 008749 261 RVVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKK--YDLSSLQYLSCGGAPLGKEVTDKFKEKF 338 (555)
Q Consensus 261 ~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~~~G~~l~~~~~~~~~~~~ 338 (555)
.++..|+++++.+..++..+++.++++++|++.++|+++..+.+...... .+++++|.+++|||++++++.+++.+.+
T Consensus 247 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 326 (617)
T 3rg2_A 247 GVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI 326 (617)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred HHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh
Confidence 99999999999998999999999999999999999999999887654332 3688999999999999999999999998
Q ss_pred CCCcEEcccCccccccccccCCCCcccCCCCCccccc-CCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhh
Q 008749 339 PSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLH-ELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKAT 417 (555)
Q Consensus 339 ~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~ 417 (555)
+++++|.||+||++..+..... .......++|+|+ ++.+++|+| +++++++.|+.|||+|+|+++++||+++++.|
T Consensus 327 -~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t 403 (617)
T 3rg2_A 327 -GCQLQQVFGMAEGLVNYTRLDD-SAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 403 (617)
T ss_dssp -CSEEEEEEEETTEEEEECCTTS-CHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHH
T ss_pred -CCcEEEEeccCcceeecccCCC-cccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhh
Confidence 8999999999999865544222 2222345789997 788999999 78999999999999999999999999999999
Q ss_pred hcccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeC
Q 008749 418 IETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRK 497 (555)
Q Consensus 418 ~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~ 497 (555)
.+.|..++||+|||+|++++||.++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++++..
T Consensus 404 ~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~ 483 (617)
T 3rg2_A 404 ASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK 483 (617)
T ss_dssp HHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES
T ss_pred hhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888999999987
Q ss_pred CCCCCCHHHHHHHHHh-cCCCCCccceEEEccccCCCCCCcccHHHHHHHHhc
Q 008749 498 PGSSINEAQLMDFIAK-QVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALS 549 (555)
Q Consensus 498 ~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~ 549 (555)
+ ..+.+++++++++ +||.|++|..++++++||+|++||+||++|++.+.+
T Consensus 484 ~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 484 E--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp S--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 5 4778899999998 699999999999999999999999999999988754
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1e-79 Score=643.64 Aligned_cols=488 Identities=27% Similarity=0.394 Sum_probs=326.7
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLS 117 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 117 (555)
++|+.++|.++++++|+ ++|+++. ++++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||++
T Consensus 5 ~~tl~~~l~~~a~~~pd---~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 78 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPD---RTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVAL 78 (509)
T ss_dssp CCCHHHHHHHHHHHSTT---SEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCC---ceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 38999999999999999 9999997 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccC-------CCCCeEEEeCCc--hhHHhhhccCCCCcccCCCC
Q 008749 118 LGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKL-------PPNIRTVLVDSP--EFLSLLSTQNQNDVVISPPA 188 (555)
Q Consensus 118 ~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 188 (555)
+|++++|+++.++.+++.++++.++++++|++......+ ......+.++.. .+..+...... ......
T Consensus 79 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 155 (509)
T 3ivr_A 79 IGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASD---TPFSAP 155 (509)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCCC---SCCCCC
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccCC---CCCCcC
Confidence 999999999999999999999999999999987654331 111223333221 12222211111 012234
Q ss_pred cCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCe
Q 008749 189 VVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSET 268 (555)
Q Consensus 189 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~ 268 (555)
...++++++|+|||||||.||+|+++|+++.+.+......+... ++++++..+|++|.+|+...+.++..|+.
T Consensus 156 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-------~~d~~l~~~p~~~~~g~~~~~~~~~~~g~ 228 (509)
T 3ivr_A 156 EFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLT-------EADVNLGMLPLFHVTGLGLMLTLQQAGGA 228 (509)
T ss_dssp CCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCC-------TTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred CCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCC-------CCcEEEEeCCCcchhHHHHHHHHHHhCCc
Confidence 56789999999999999999999999999999888877765532 78999999999999999877777777777
Q ss_pred EEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccC
Q 008749 269 AVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYG 348 (555)
Q Consensus 269 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG 348 (555)
.++...+++..+++.++++++|++.++|+++..+.+.. ...+++++|.++.+|++ ++.+++.+.++++++++.||
T Consensus 229 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG 303 (509)
T 3ivr_A 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFG 303 (509)
T ss_dssp EEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEE
T ss_pred EEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccC
Confidence 77777889999999999999999999999999998875 33457899999999987 88999999999999999999
Q ss_pred ccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCCCCeee
Q 008749 349 LTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLK 428 (555)
Q Consensus 349 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 428 (555)
+||++.+++..... .....+|+|+++++++|+| +++++++.|+.|||+++|++++.||+++++.+.+.| .++||+
T Consensus 304 ~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~ 378 (509)
T 3ivr_A 304 QSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHH 378 (509)
T ss_dssp EGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEE
T ss_pred ccccccccccCccc---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcc
Confidence 99998876653322 2334599999999999999 669999999999999999999999999999999999 589999
Q ss_pred cCceEEEecCCcEEEEccc--CCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q 008749 429 TGDLCYFDSNGFLFIVDRL--KELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQ 506 (555)
Q Consensus 429 TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~ 506 (555)
|||+|++++||++++.||. ||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++...+.++
T Consensus 379 TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 458 (509)
T 3ivr_A 379 TGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADA 458 (509)
T ss_dssp EEEEEEECTTSCEEEEEEC-------------------------------------------------------------
T ss_pred cccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHH
Confidence 9999999999999999999 99999999999999999999999999999999999988889999999998887788899
Q ss_pred HHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcCC
Q 008749 507 LMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSGN 551 (555)
Q Consensus 507 l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 551 (555)
|+++++++|+.|++|..++++++||+|++||+||++|++.+.+..
T Consensus 459 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~ 503 (509)
T 3ivr_A 459 LAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEG 503 (509)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999987754
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.6e-79 Score=648.37 Aligned_cols=482 Identities=21% Similarity=0.279 Sum_probs=325.7
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLS 117 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 117 (555)
..++.++|.++++++|+ ++|+++. ++++||+||.++++++|++|.+ +|+++||+|+++++|++++++++|||++
T Consensus 74 ~~~l~~~l~~~a~~~pd---~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 147 (570)
T 4gr5_A 74 GACVHELFEAQAARAPD---AVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVLK 147 (570)
T ss_dssp SCCHHHHHHHHHHHCTT---SEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCC---CeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 47999999999999999 9999998 7899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCCCCeEEEeCCchhHHhhhccCCCCcccCCCCcCCCCCEEE
Q 008749 118 LGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAV 197 (555)
Q Consensus 118 ~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 197 (555)
+|++++|+++.++.+++.++++.+++++++++......+... ..+.+..... ..... ........++++++
T Consensus 148 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~----~~~~~----~~~~~~~~~~d~a~ 218 (570)
T 4gr5_A 148 AGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT-TTLYVEDEAA----SDAPA----GNLATGVGPEDVAC 218 (570)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS-EEEECCC-----------C----CCCCCCCCTTSEEE
T ss_pred HCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC-cceeeecccc----ccccc----cccCCCCCCCCeEE
Confidence 999999999999999999999999999999998766555432 2222221110 00000 12234567899999
Q ss_pred EEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeC--CC
Q 008749 198 LLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFME--RF 275 (555)
Q Consensus 198 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~--~~ 275 (555)
|+|||||||.||+|+++|+++.+..... ... ... ++++++..+|++|..+...++.++..|+++++.+ .+
T Consensus 219 i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-~~~------~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~ 290 (570)
T 4gr5_A 219 VMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-GFG------PDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNP 290 (570)
T ss_dssp EECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-CCS------TTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSC
T ss_pred EEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-CCC------CCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccC
Confidence 9999999999999999999997655431 111 122 7899999999999877788899999999999986 47
Q ss_pred CHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCccccccc
Q 008749 276 DFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGL 355 (555)
Q Consensus 276 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 355 (555)
++..+++.++++++|++.++|+++..+.+.... .++++|.+++||+++++++.+++.+.++++++++.||+||++.+
T Consensus 291 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~ 367 (570)
T 4gr5_A 291 DPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGF 367 (570)
T ss_dssp CHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSC
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheee
Confidence 899999999999999999999999999876433 37899999999999999999999999989999999999999876
Q ss_pred cccCCCCc--ccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCC--------CC
Q 008749 356 ASSMRDSE--ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDS--------EG 425 (555)
Q Consensus 356 ~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------~~ 425 (555)
++...... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.|.+.|.. ++
T Consensus 368 ~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~ 446 (570)
T 4gr5_A 368 TTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGER 446 (570)
T ss_dssp SEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCE
T ss_pred eeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCE
Confidence 65433222 123356799999999999999 77999999999999999999999999999999988843 37
Q ss_pred eeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC-CCCCH
Q 008749 426 WLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPG-SSINE 504 (555)
Q Consensus 426 ~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~-~~~~~ 504 (555)
||+|||+|++++||++++.||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|++.+. ...+.
T Consensus 447 w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~ 526 (570)
T 4gr5_A 447 MYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDA 526 (570)
T ss_dssp EEEEEEEEEECTTSCEEEEEC-----------------------------------------------------------
T ss_pred EEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999888888899999987654 35677
Q ss_pred HHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHH
Q 008749 505 AQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNH 546 (555)
Q Consensus 505 ~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~ 546 (555)
++|+++++++|+.|++|..++++++||+|++||++|++|++.
T Consensus 527 ~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 527 AELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 899999999999999999999999999999999999999875
No 21
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.9e-77 Score=632.75 Aligned_cols=492 Identities=21% Similarity=0.324 Sum_probs=415.7
Q ss_pred CHHHHhhccccc-----CCCCCCCcEEEEC---CCCceecHHHHHHHHHHHHHHHHhhc-CCCCCCEEEEEcCCCCcHHH
Q 008749 40 SVTQFTLSILHK-----SATTTAAPFLMNA---ATGRRLTYPEFLRQTNSLTLSLQKHY-SLSKNDVAFILSPSSFEIPV 110 (555)
Q Consensus 40 ~~~~~~~~~~~~-----~p~~~~~~a~~~~---~~~~~~Ty~el~~~v~~la~~L~~~~-g~~~gd~V~l~~~~~~~~~~ 110 (555)
++.++|.+++++ +|+ ++|+++. +.++++||+||.++++++|++|.+ . |+++||+|+++++|++++++
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~---~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e~~~ 114 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPP---SPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPEWWL 114 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCC---CEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHHHHH
T ss_pred HHHHHHHHHHhhccccCCCC---ceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHHHHH
Confidence 356888888888 999 8999873 224789999999999999999998 7 99999999999999999999
Q ss_pred HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCC------CCC-eEEEeCC------chhHHhhhcc
Q 008749 111 LYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLP------PNI-RTVLVDS------PEFLSLLSTQ 177 (555)
Q Consensus 111 ~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~------~~~-~~~~~~~------~~~~~~~~~~ 177 (555)
++|||+++|++++|+++.++.+++.++++.++++++|+++.....+. ... ..+.++. ..+.++....
T Consensus 115 ~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (570)
T 3c5e_A 115 VILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEA 194 (570)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHS
T ss_pred HHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhcc
Confidence 99999999999999999999999999999999999999876543221 112 2344432 1244444332
Q ss_pred CCCCcccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHH--HHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHH
Q 008749 178 NQNDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIIS--LVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFG 255 (555)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 255 (555)
.. ........++++++|+|||||||.||+|+++|+ ++. ..... ..+. .. ++++++..+|++|.++
T Consensus 195 ~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~-~~------~~d~~~~~~p~~~~~~ 261 (570)
T 3c5e_A 195 ST----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTG-LQ------ASDIMWTISDTGWILN 261 (570)
T ss_dssp CS----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTS-CC------TTCEEEECCCTTSHHH
T ss_pred cc----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcC-CC------CCceEEEcCchHHHHH
Confidence 21 112234567999999999999999999999999 444 33222 2222 22 7899999999999999
Q ss_pred HH-HHHHHHHcCCeEEEeC--CCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHH
Q 008749 256 FL-ALVRVVAVSETAVFME--RFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTD 332 (555)
Q Consensus 256 ~~-~~~~~l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~ 332 (555)
+. .++.++..|+++++.+ .+++..+++.++++++|+++++|+++..+.+.. ....+++++|.+++||+++++++.+
T Consensus 262 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~ 340 (570)
T 3c5e_A 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLE 340 (570)
T ss_dssp HHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHH
Confidence 85 7889999999999886 689999999999999999999999999998863 3344578999999999999999999
Q ss_pred HHHHHCCCCcEEcccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEe-----CCccc
Q 008749 333 KFKEKFPSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLR-----GPTIM 407 (555)
Q Consensus 333 ~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~-----~~~~~ 407 (555)
+|.+.+ ++++++.||+||++.+++... ......+++|+|+++++++|+| +++++++.|+.|||+++ |++++
T Consensus 341 ~~~~~~-g~~i~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~ 416 (570)
T 3c5e_A 341 NWRAQT-GLDIRESYGQTETGLTCMVSK--TMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIF 416 (570)
T ss_dssp HHHHHH-SCCCEEEEEETTTEEEEECCT--TSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCC
T ss_pred HHHHHh-CCchhhccchhhcccceecCc--ccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhh
Confidence 999988 899999999999987655432 2234568999999999999999 67999999999999999 99999
Q ss_pred ccccCCchhhhcccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCC
Q 008749 408 KGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAG 487 (555)
Q Consensus 408 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~ 487 (555)
.||+++++.|.+.| .++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..+
T Consensus 417 ~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 495 (570)
T 3c5e_A 417 SGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRG 495 (570)
T ss_dssp CEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred ccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCC
Confidence 99999999999998 58999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceEEEEEEeCCCC--CC---CHHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHH--hcCCCCC
Q 008749 488 QIPMAFVVRKPGS--SI---NEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHA--LSGNLSK 554 (555)
Q Consensus 488 ~~l~~~v~~~~~~--~~---~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~--~~~~~~~ 554 (555)
+.++++|++.++. .. ..++|+++++++|+.|++|..++++++||+|++||++|++|++.+ .++++++
T Consensus 496 ~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s~~~~~ 569 (570)
T 3c5e_A 496 EVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGKARA 569 (570)
T ss_dssp EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-------
T ss_pred eEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhhhcccc
Confidence 9999999987653 11 257899999999999999999999999999999999999999988 4444443
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=9.1e-78 Score=639.36 Aligned_cols=478 Identities=17% Similarity=0.165 Sum_probs=401.4
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLS 117 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 117 (555)
..|+.++|.++++++|+ ++|+++. ++++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||++
T Consensus 26 ~~tl~~~~~~~a~~~Pd---~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lailk 99 (620)
T 4dg8_A 26 HPTVVARFSEMAALHPH---REAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAILL 99 (620)
T ss_dssp SCCHHHHHHHHHHHCTT---SEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC---CeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 47999999999999999 9999998 7899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCCCCeEEEeCCchhHHhhhccCCCCcccCCCCcCCCCCEEE
Q 008749 118 LGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPPNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAV 197 (555)
Q Consensus 118 ~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 197 (555)
+|+++||++|.++.+++.++++.+++++++++........ ......+. . .... ..........++++++
T Consensus 100 aGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~-~~~~~~~~-----~---~~~~--~~~~~~~~~~~~d~a~ 168 (620)
T 4dg8_A 100 SGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN-GLPCVPVR-----H---LPAA--PASVARPCFAADQIAY 168 (620)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT-TSCEEEGG-----G---CCCC--CCCSSCCCCCTTSEEE
T ss_pred hCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc-CCceeeec-----c---CCcC--CccccCCCCCCCCeEE
Confidence 9999999999999999999999999999997665443322 12222111 0 0000 0012223456899999
Q ss_pred EEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeC--CC
Q 008749 198 LLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFME--RF 275 (555)
Q Consensus 198 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~--~~ 275 (555)
|+|||||||.||+|+++|+++.+.+.. ...+. .. ++++++..+|++|..++..++.++..|+++++.+ .+
T Consensus 169 iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~-~~------~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~ 240 (620)
T 4dg8_A 169 INFSSGTTGRPKAIACTHAGITRLCLG-QSFLA-FA------PQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPL 240 (620)
T ss_dssp EEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGT-TC------TTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSC
T ss_pred EEECCCccccCeEEEEchHHHHHHHHH-HHhhC-CC------CCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccC
Confidence 999999999999999999999876654 22222 22 7899999999999999999999999999999964 57
Q ss_pred CHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCccccccc
Q 008749 276 DFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECGGL 355 (555)
Q Consensus 276 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 355 (555)
++..+++.++++++|++.++|+++..+.+... ..++++|.+++|||++++++.+++.+.+++++++|.||+||++.+
T Consensus 241 ~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 317 (620)
T 4dg8_A 241 DPGVLRQLIGERGADSAWLTASLFNTLVDLDP---DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTF 317 (620)
T ss_dssp CHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSC
T ss_pred CHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh---hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhh
Confidence 99999999999999999999999999987532 247899999999999999999999988889999999999999877
Q ss_pred cccCCCCc--ccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCCC-------Ce
Q 008749 356 ASSMRDSE--ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSE-------GW 426 (555)
Q Consensus 356 ~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-------~~ 426 (555)
++...... ......++|+|+++++++|+|++....++.|+.|||+|+|+++++||+++++.|.+.|..+ +|
T Consensus 318 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~ 397 (620)
T 4dg8_A 318 TCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRA 397 (620)
T ss_dssp SEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEE
T ss_pred eEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceE
Confidence 65433222 2345678999999999999995444448999999999999999999999999999998543 79
Q ss_pred eecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q 008749 427 LKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQ 506 (555)
Q Consensus 427 ~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~ 506 (555)
|+|||+|++++||++++.||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..+.. +++++... ++
T Consensus 398 yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~l-v~~~~~~~------~~ 470 (620)
T 4dg8_A 398 YRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQL-LCAWTGKA------DA 470 (620)
T ss_dssp EEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEE-EEEEEECT------TC
T ss_pred EeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEE-EEEEecCh------HH
Confidence 999999999999999999999999999999999999999999999999999999887754444 44444321 23
Q ss_pred HHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcC
Q 008749 507 LMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSG 550 (555)
Q Consensus 507 l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 550 (555)
++++++++||.|++|..++++++||+|++||+||++|++.+.+.
T Consensus 471 ~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 471 SPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp CCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred HHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 44567788999999999999999999999999999999887654
No 23
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8e-78 Score=634.68 Aligned_cols=478 Identities=20% Similarity=0.257 Sum_probs=409.8
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLS 117 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 117 (555)
..|+.++|.++++++|+ ++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus 38 ~~~l~~~l~~~a~~~p~---~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPN---NVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp TCCHHHHHHHHHHHCTT---SEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCC---CeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 37999999999999999 9999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCC---CCCeEEEeCCchhHHhhhccCCCCcccCCCCcCCCCC
Q 008749 118 LGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLP---PNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSD 194 (555)
Q Consensus 118 ~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (555)
+|++++|+++.++.+++.++++.++++++|++......+. .......++...+. .... ........+++
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~d 183 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIK----IREG----TNLHVPSKSTD 183 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTT----TSCC----SCCCCCCCTTS
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhc----cccC----ccCCCCCCCCC
Confidence 9999999999999999999999999999999875432221 12223333321111 0000 11123456789
Q ss_pred EEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeCC
Q 008749 195 AAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMER 274 (555)
Q Consensus 195 ~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~ 274 (555)
+++++|||||||.||+|+++|+++.+.+......+.. . +++++++.+|++|..+++.++.++..|+++++.+.
T Consensus 184 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~------~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 184 LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNV-T------EKDRIGQFASISFDASVWEMFMALLTGASLYIILK 256 (563)
T ss_dssp EEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCC-C------TTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCH
T ss_pred eEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCC-C------CCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcCh
Confidence 9999999999999999999999998888776655442 2 78999999999999999888999999999999875
Q ss_pred ---CCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCccc
Q 008749 275 ---FDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTE 351 (555)
Q Consensus 275 ---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE 351 (555)
+++..+++.++++++|++.++|+++..+... .++++|.+++||+++++++.++|.+ .+++++.||+||
T Consensus 257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~YG~TE 327 (563)
T 1amu_A 257 DTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTE 327 (563)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGG
T ss_pred HhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh---CCeEEEEECcCH
Confidence 6899999999999999999999998776432 3678999999999999999999876 478999999999
Q ss_pred cccccccCCCCc-ccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCC------C
Q 008749 352 CGGLASSMRDSE-ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDS------E 424 (555)
Q Consensus 352 ~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~ 424 (555)
++.+++...... ......++|+|+++++++|+| +++++++.|+.|||+++|++++.||+++++.|.+.|.. +
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~ 406 (563)
T 1amu_A 328 TTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGE 406 (563)
T ss_dssp GSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTS
T ss_pred HhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCC
Confidence 987665433222 123457899999999999999 77899999999999999999999999999999988742 4
Q ss_pred CeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH
Q 008749 425 GWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINE 504 (555)
Q Consensus 425 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~ 504 (555)
+||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.. ..+.
T Consensus 407 ~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~ 484 (563)
T 1amu_A 407 KLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPL 484 (563)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCH
T ss_pred EEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCH
Confidence 69999999999999999999999999999999999999999999999999999999999888889999999763 4678
Q ss_pred HHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHh
Q 008749 505 AQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHAL 548 (555)
Q Consensus 505 ~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~ 548 (555)
++|+++++++|+.|++|..++++++||+|++||++|++|++...
T Consensus 485 ~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 485 EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp HHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred HHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 99999999999999999999999999999999999999987654
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.2e-77 Score=628.88 Aligned_cols=483 Identities=23% Similarity=0.326 Sum_probs=402.2
Q ss_pred CC-HHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 008749 39 LS-VTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLS 117 (555)
Q Consensus 39 ~~-~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 117 (555)
++ +.+++.++++ +|+ ++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||++
T Consensus 23 ~~~~~~~l~~~~~-~p~---~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 95 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAG---KTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGALY 95 (529)
T ss_dssp CCHHHHHHHHTGG-GTT---SEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHHH
T ss_pred eeHHHHHHHhhhc-cCC---ceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 55 8888888888 999 9999987 6899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCC------CC--CeEEEeCCc--------hhHHhhhccCCCC
Q 008749 118 LGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLP------PN--IRTVLVDSP--------EFLSLLSTQNQND 181 (555)
Q Consensus 118 ~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~------~~--~~~~~~~~~--------~~~~~~~~~~~~~ 181 (555)
+|++++|+++.++.+++.++++.++++++|++......+. .. ...+..+.. .+.++......
T Consensus 96 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (529)
T 2v7b_A 96 AGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAP-- 173 (529)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCC--
T ss_pred cCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCC--
Confidence 9999999999999999999999999999999876432211 11 223332321 24444332211
Q ss_pred cccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHH-HHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHH-HH
Q 008749 182 VVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNI-ISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFL-AL 259 (555)
Q Consensus 182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~ 259 (555)
........++++++++|||||||.||+|+++|+++ .+........+. .. +++++++.+|++|.+|+. .+
T Consensus 174 --~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~-~~------~~d~~~~~~p~~~~~g~~~~~ 244 (529)
T 2v7b_A 174 --AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILG-IA------ENDVVFSAAKLFFAYGLGNGL 244 (529)
T ss_dssp --CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCC-CC------TTCEEEESSCTTSHHHHHHHT
T ss_pred --cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccC-CC------CCcEEEEeecHHHHHHHHHHH
Confidence 11223456799999999999999999999999999 444433322222 22 789999999999999984 56
Q ss_pred HHHHHcCCeEEEe-CCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHC
Q 008749 260 VRVVAVSETAVFM-ERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKF 338 (555)
Q Consensus 260 ~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~ 338 (555)
+.++..|+++++. +.+++..+++.+.++++|++.++|+++..+.+..........++|.+++||+++++++.+++.+.+
T Consensus 245 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~ 324 (529)
T 2v7b_A 245 TFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF 324 (529)
T ss_dssp HHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 7899999999987 568999999999999999999999999999876543332124899999999999999999999988
Q ss_pred CCCcEEcccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhh
Q 008749 339 PSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATI 418 (555)
Q Consensus 339 ~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 418 (555)
++++++.||+||++.+++.... .....+++|+|+++++++|+| +++++++.|+.|||+++|++++.||+++++.+.
T Consensus 325 -g~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~ 400 (529)
T 2v7b_A 325 -GCEILDGIGSTEMLHIFLSNRA--GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSR 400 (529)
T ss_dssp -SCCEEEEEECTTTSSEEEECCT--TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHH
T ss_pred -CCceeeeEchhhcCceeecccc--CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHH
Confidence 8999999999999765554322 224668899999999999999 779999999999999999999999999999999
Q ss_pred cccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCC
Q 008749 419 ETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKP 498 (555)
Q Consensus 419 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~ 498 (555)
..| .++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..++.+++++++.+
T Consensus 401 ~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~ 478 (529)
T 2v7b_A 401 ATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKR 478 (529)
T ss_dssp HHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECT
T ss_pred Hhh-hcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecC
Confidence 998 58999999999999999999999999999999999999999999999999999999998 5566778899999876
Q ss_pred CCCC---CHHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHH
Q 008749 499 GSSI---NEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVN 545 (555)
Q Consensus 499 ~~~~---~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~ 545 (555)
+... ..++|+++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 479 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 479 EFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp TCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred CCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 6432 2468999999999999999999999999999999999999986
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.9e-77 Score=623.08 Aligned_cols=482 Identities=22% Similarity=0.335 Sum_probs=392.7
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSL 118 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 118 (555)
+|+.++|.++++++|+ ++|+++. ++++||+||.++++++|+.|++ . +||+|+++++|++++++++|||+++
T Consensus 1 mtl~~~l~~~a~~~pd---~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~~ 71 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGH---HIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWLA 71 (501)
T ss_dssp --CCCHHHHHHHHHTT---SEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCC---ceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 4788899999999999 9999998 7899999999999999999998 4 8999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCC-----CCeEEEeCC--ch---------hHHhhhccC-CCC
Q 008749 119 GVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPP-----NIRTVLVDS--PE---------FLSLLSTQN-QND 181 (555)
Q Consensus 119 G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-----~~~~~~~~~--~~---------~~~~~~~~~-~~~ 181 (555)
|++++|+++.++.+++.++++.+++++++++......... ....+.... .. +........ ...
T Consensus 72 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (501)
T 3ipl_A 72 NIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKES 151 (501)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CC
T ss_pred CCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCC
Confidence 9999999999999999999999999999998766544321 000000000 00 000000000 000
Q ss_pred cccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHH
Q 008749 182 VVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVR 261 (555)
Q Consensus 182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 261 (555)
..........++++++++|||||||.||+|+++|+++.+.+......+... +++++++.+|++|.+|+..++.
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~-------~~d~~l~~~p~~~~~g~~~~~~ 224 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFD-------RDTNWLSVLPIYHISGLSVLLR 224 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCC-------TTCEEEECSCTTSHHHHHHHHH
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCC-------ccCEEEEeCcHHHHHHHHHHHH
Confidence 001122345789999999999999999999999999998888777665432 7899999999999999988899
Q ss_pred HHHcCCeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCC
Q 008749 262 VVAVSETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSV 341 (555)
Q Consensus 262 ~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~ 341 (555)
++..|+++++.+.+++..+++.++++++|++.++|+++..|.+...... .++|.+++||+++++++.+++.+ + ++
T Consensus 225 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~ 299 (501)
T 3ipl_A 225 AVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NL 299 (501)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TC
T ss_pred HHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CC
Confidence 9999999999999999999999999999999999999999988764433 38999999999999999999988 4 89
Q ss_pred cEEcccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhccc
Q 008749 342 EIIQGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETV 421 (555)
Q Consensus 342 ~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 421 (555)
++++.||+||++..+............+++|+|+++++++|+|++ .|+.|||+++|+.++.||+++++.+.. +
T Consensus 300 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~ 372 (501)
T 3ipl_A 300 PIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F 372 (501)
T ss_dssp CEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E
T ss_pred CEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h
Confidence 999999999998765543332233457789999999999999954 467899999999999999999998887 5
Q ss_pred CCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC
Q 008749 422 DSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSS 501 (555)
Q Consensus 422 ~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~ 501 (555)
.++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++.. ..
T Consensus 373 -~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~ 449 (501)
T 3ipl_A 373 -ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SD 449 (501)
T ss_dssp -ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SC
T ss_pred -cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CC
Confidence 689999999999999999999999999999999999999999999999999999999999998889999999874 45
Q ss_pred CCHHHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcCC
Q 008749 502 INEAQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSGN 551 (555)
Q Consensus 502 ~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~ 551 (555)
.+.++|+++++++|+.|++|..++++++||+|++||++|++|++...+.+
T Consensus 450 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~ 499 (501)
T 3ipl_A 450 ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHH 499 (501)
T ss_dssp CCHHHHHHHHHHHSCGGGSCSEEEECSSCC--------------------
T ss_pred CCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccccc
Confidence 78899999999999999999999999999999999999999999876543
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=4.2e-77 Score=621.73 Aligned_cols=473 Identities=25% Similarity=0.390 Sum_probs=393.5
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSL 118 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 118 (555)
.|+.+.|.++++++|++ ++|+++. ++++||+||.++++++|+.|.. |++|+++++|++++++++|||+++
T Consensus 22 ~tl~~~l~~~a~~~p~d--~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~------~~~V~i~~~~~~~~~~~~la~~~~ 91 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPAD--RPALRFG--ERSLTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAALLA 91 (505)
T ss_dssp --CCTTTSSCCCSGGGG--SEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCC--CeEEEEC--CeeeeHHHHHHHHHHHHhhccC------CCEEEEEcCCCHHHHHHHHHHHHh
Confidence 67888899999988753 8999998 7899999999999999987753 889999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccc-cCCCCCeEEEeCCchhHHhhhccCCCCcccCCCCcCCCCCEEE
Q 008749 119 GVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSH-KLPPNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDAAV 197 (555)
Q Consensus 119 G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 197 (555)
|++++|+++.++.+++.++++.++++++|++..... ........+.++.. ... ........++++++
T Consensus 92 Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~--------~~~----~~~~~~~~~~d~a~ 159 (505)
T 3nyq_A 92 GVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVR--------ARG----AVPEDGADDGDPAL 159 (505)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTT--------CCC----CCCCCCCCTTSEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccc--------ccc----CCCCCCCCCCCeEE
Confidence 999999999999999999999999999999865321 11112233322211 000 12234457799999
Q ss_pred EEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHH-HHHHHHHHcCCeEEEeCCCC
Q 008749 198 LLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGF-LALVRVVAVSETAVFMERFD 276 (555)
Q Consensus 198 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~~~ 276 (555)
++|||||||.||+|+++|+++.+.+......+... +++++++.+|++|..|+ ..++.++..|+++++.+.++
T Consensus 160 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-------~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~ 232 (505)
T 3nyq_A 160 VVYTSGTTGPPKGAVIPRRALATTLDALADAWQWT-------GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFS 232 (505)
T ss_dssp EEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCC-------TTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCC
T ss_pred EEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCC-------CCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 99999999999999999999999988877766533 78999999999999998 57899999999999999999
Q ss_pred HHHHHHHHhhcCCceEecchHHHHHHHhCcccC---CCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCccccc
Q 008749 277 FETMLKTVDKYKLTSMPVSPPLVVALTKSELTK---KYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTECG 353 (555)
Q Consensus 277 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~ 353 (555)
+..+++.+ ++++|+++++|+++..+.+..... ...++++|.+++||+++++++.+++.+.+ ++++++.||+||++
T Consensus 233 ~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~ 310 (505)
T 3nyq_A 233 TEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETL 310 (505)
T ss_dssp HHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTE
T ss_pred hHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcc
Confidence 99999999 889999999999999988743221 12357889999999999999999999988 89999999999998
Q ss_pred cccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCC---CCccEEEEeCCcccccccCCchhhhcccCCCCeeecC
Q 008749 354 GLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSP---AQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTG 430 (555)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TG 430 (555)
..+.... ......+++|+|+++++++|+| +++++++. |+.|||+++|++++.||+++++.|.+.|..++||+||
T Consensus 311 ~~~~~~~--~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TG 387 (505)
T 3nyq_A 311 MNTSVRA--DGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG 387 (505)
T ss_dssp EEEECCT--TSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEE
T ss_pred cccccCC--CCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccC
Confidence 7665532 3344578899999999999999 66888775 8999999999999999999999999999889999999
Q ss_pred ceEEEecCCcEEEEccc-CCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCC-CCCCCHHHHH
Q 008749 431 DLCYFDSNGFLFIVDRL-KELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKP-GSSINEAQLM 508 (555)
Q Consensus 431 D~~~~~~~g~l~~~GR~-~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~-~~~~~~~~l~ 508 (555)
|+|++++||++++.||+ ||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|++.+ ....+.++|+
T Consensus 388 Dl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~ 467 (505)
T 3nyq_A 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLA 467 (505)
T ss_dssp EEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHH
T ss_pred CeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHH
Confidence 99999999999999997 689999999999999999999999999999999999988999999999876 4567889999
Q ss_pred HHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHH
Q 008749 509 DFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVN 545 (555)
Q Consensus 509 ~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~ 545 (555)
++++++|+.|++|..++++++||+|++||+||++|++
T Consensus 468 ~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 468 DHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp HHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred HHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999999999999999999999999999986
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2.4e-75 Score=618.07 Aligned_cols=501 Identities=17% Similarity=0.190 Sum_probs=322.2
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEECC--------CCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNAA--------TGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIP 109 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~~--------~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~ 109 (555)
.+|+.++|.++++++|+ ++|+++.. .++++||+||.++++++|+.|.+ .|+ +||+|+++++|+++++
T Consensus 19 ~~tl~~~l~~~a~~~p~---~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 19 TVPPSHYIETWAKTHPE---WKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp CCCTTHHHHHHHHHCTT---SEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHHH
T ss_pred cCCHHHHHHHHHHHCCC---chhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHHH
Confidence 48999999999999999 99998642 12789999999999999999998 899 7999999999999999
Q ss_pred HHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCCC--CCeEEEeCCchhHHhhhccCCCCcccCCC
Q 008749 110 VLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLPP--NIRTVLVDSPEFLSLLSTQNQNDVVISPP 187 (555)
Q Consensus 110 ~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (555)
+++|||+++|++++|+++.++.+++.++++.++++++|+++........ ....+......+......... ....
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 169 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDT----SDIL 169 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCC----SCCC
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccc----cccc
Confidence 9999999999999999999999999999999999999998766544322 233444444444443333322 1222
Q ss_pred CcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCC-CCCCCCCEEEEecChhHHHHHHHHHHHHHcC
Q 008749 188 AVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPA-EPQPSGEVSLITLPLFHVFGFLALVRVVAVS 266 (555)
Q Consensus 188 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g 266 (555)
....++++++|+|||||||.||+|+++|+++.+.+..+...+...... ......+++++..|++|..++..++.++..|
T Consensus 170 ~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 249 (562)
T 3ite_A 170 NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFG 249 (562)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTT
T ss_pred cCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcc
Confidence 345578899999999999999999999999988877655432100000 0001678999999999998888889999999
Q ss_pred CeEEEeCCCC-HHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEc
Q 008749 267 ETAVFMERFD-FETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQ 345 (555)
Q Consensus 267 ~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~ 345 (555)
+++++.+.+. +..+.+.++++++|++.++|++++.+.... .+++++|.+++||+++++++.++|.+.+ ++.+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~ 324 (562)
T 3ite_A 250 LCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVN 324 (562)
T ss_dssp CEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEE
T ss_pred cEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEE
Confidence 9999887543 577889999999999999999988775443 2478999999999999999999999877 899999
Q ss_pred ccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhccc-CCC
Q 008749 346 GYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETV-DSE 424 (555)
Q Consensus 346 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~ 424 (555)
.||+||++..++...... ....+++|+|+++++++|+|++++++++.|+.|||+++|+.++.||+++++.+...+ +.+
T Consensus 325 ~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~ 403 (562)
T 3ite_A 325 VYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGR 403 (562)
T ss_dssp EECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTE
T ss_pred eeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCC
Confidence 999999987665433222 335678999999999999998889999999999999999999999999999887665 223
Q ss_pred CeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcC-CCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q 008749 425 GWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSN-PEIADAAVIPYPDEEAGQIPMAFVVRKPGSSIN 503 (555)
Q Consensus 425 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~-~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~ 503 (555)
+||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.++ +.+.+++|++..++..++..+++++..++....
T Consensus 404 ~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~ 483 (562)
T 3ite_A 404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR 483 (562)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEC---------------------------------------------------------
T ss_pred EEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc
Confidence 4999999999999999999999999999999999999999999998 788888888888777666655555544332222
Q ss_pred -------------HHHHHHHHHhcCCCCCccceEEEccccCCC-CCCcccHHHHHHHHhcCCCC
Q 008749 504 -------------EAQLMDFIAKQVAPYKKIRRVAFVNSIPKS-EAGKILRRELVNHALSGNLS 553 (555)
Q Consensus 504 -------------~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t-~~GKv~r~~l~~~~~~~~~~ 553 (555)
.++|+++++++|+.|++|+.++++++||+| ++||+||++|++++.+..+.
T Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~~~ 547 (562)
T 3ite_A 484 GELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLSLG 547 (562)
T ss_dssp ----------------------------------------------------------------
T ss_pred ccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccCHH
Confidence 358999999999999999999999999998 89999999999999876543
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.2e-74 Score=661.43 Aligned_cols=480 Identities=21% Similarity=0.279 Sum_probs=417.9
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSL 118 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 118 (555)
.++.++|.++++++|+ ++|+++. ++++||+||.++++++|+.|.+ .|+++|++|+|+++|+++++++++||+++
T Consensus 464 ~~l~~~~~~~~~~~p~---~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailka 537 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPD---APALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLKA 537 (1304)
T ss_dssp CCHHHHHHHHHHHCTT---SEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCC---CeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHHH
Confidence 7899999999999999 9999987 7899999999999999999999 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEcCCccccCC---CCCeEEEeCCchhHHhhhccCCCCcccCCCCcCCCCCE
Q 008749 119 GVVVSPANPLGSTSEISHQLHLSKPSIAFATSRTSHKLP---PNIRTVLVDSPEFLSLLSTQNQNDVVISPPAVVNQSDA 195 (555)
Q Consensus 119 G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (555)
|+++||++|.++.+++.++++.+++++++++......+. .....+.++... ... . .. ..+.....++++
T Consensus 538 G~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~----~~~~~~~~~~~~ 609 (1304)
T 2vsq_A 538 GAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQT--RFE-E-QA----SDPATAIDPNDP 609 (1304)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGG--GGG-S-CS----SCCCCCCCTTSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEecccc--ccc-c-cc----CCCCCCCCCCCe
Confidence 999999999999999999999999999999987655432 222334343221 111 1 11 122334678999
Q ss_pred EEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeCC-
Q 008749 196 AVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMER- 274 (555)
Q Consensus 196 a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~- 274 (555)
+||+|||||||.||||+++|+++.+.. +....+. .. ++++++...|++|..+.+.++.++..|+++++.+.
T Consensus 610 ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~~-~~------~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~ 681 (1304)
T 2vsq_A 610 AYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYMA-FS------DQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEH 681 (1304)
T ss_dssp EEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSSC-CC------TTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGG
T ss_pred EEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhcC-CC------CCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChh
Confidence 999999999999999999999998652 2222222 22 78999999999999988999999999999999874
Q ss_pred --CCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCcccc
Q 008749 275 --FDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTEC 352 (555)
Q Consensus 275 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 352 (555)
.++..+.+.+.++++|+++++|+++..+.+... ..++++|.+++|||+++.++.++|.+.+++++++|.||+||+
T Consensus 682 ~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 758 (1304)
T 2vsq_A 682 TLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEG 758 (1304)
T ss_dssp GTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGG
T ss_pred hcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHH
Confidence 689999999999999999999999999876532 125789999999999999999999998877899999999999
Q ss_pred ccccccCCCCc--ccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccC------CC
Q 008749 353 GGLASSMRDSE--ETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVD------SE 424 (555)
Q Consensus 353 ~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~------~~ 424 (555)
+.+++...... ......++|+|++|++++|+| +++++++.|+.|||+|+|+++++||+++++.|.++|. .+
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~ 837 (1304)
T 2vsq_A 759 TVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGE 837 (1304)
T ss_dssp SSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTC
T ss_pred hHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCC
Confidence 88766543222 233456899999999999999 7789999999999999999999999999999999883 34
Q ss_pred CeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH
Q 008749 425 GWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINE 504 (555)
Q Consensus 425 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~ 504 (555)
+||+|||+|++++||.++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..+..++++++... ..+.
T Consensus 838 ~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~ 915 (1304)
T 2vsq_A 838 TLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSA 915 (1304)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCH
T ss_pred eeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCH
Confidence 69999999999999999999999999999999999999999999999999999999988888889999999764 5778
Q ss_pred HHHHHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHH
Q 008749 505 AQLMDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNH 546 (555)
Q Consensus 505 ~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~ 546 (555)
++++++++++||.|++|..++++++||+|++||+||++|.+.
T Consensus 916 ~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 916 EDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp HHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred HHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCc
Confidence 999999999999999999999999999999999999998654
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.6e-75 Score=621.15 Aligned_cols=495 Identities=21% Similarity=0.271 Sum_probs=413.1
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEEC--CCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNA--ATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSL 115 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~--~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 115 (555)
..|+.++|.++++++|+ ++|+++. +.++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||
T Consensus 10 ~~tl~~~l~~~a~~~p~---~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~ 85 (590)
T 3kxw_A 10 CQSLVDVVRLRALHSPN---KKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLGC 85 (590)
T ss_dssp CSSHHHHHHHHHHHCTT---SEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCC---CeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 48999999999999999 8998763 235799999999999999999998 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCC---HHHHHHHhhhcCCeEEEEcCCccccCCCC--------CeEEEeCCchhHHhhhccCCCCccc
Q 008749 116 LSLGVVVSPANPLGS---TSEISHQLHLSKPSIAFATSRTSHKLPPN--------IRTVLVDSPEFLSLLSTQNQNDVVI 184 (555)
Q Consensus 116 ~~~G~~~v~v~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (555)
+++|++++|+++.++ .+++.++++.+++++++++......+... .....+.. ..+..... ..
T Consensus 86 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~ 158 (590)
T 3kxw_A 86 LYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIAL---ESIELNRS----SS 158 (590)
T ss_dssp HHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEG---GGCCGGGG----GG
T ss_pred HHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeec---hhcccccc----cc
Confidence 999999999999884 57899999999999999986544332210 01111111 11111100 02
Q ss_pred CCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHH-HHHHH
Q 008749 185 SPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLA-LVRVV 263 (555)
Q Consensus 185 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l 263 (555)
..+....++++++|+|||||||.||+|+++|+++.+.+......+... +++++++.+|++|.+|+.. ++.++
T Consensus 159 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-------~~d~~l~~~p~~h~~g~~~~~~~~l 231 (590)
T 3kxw_A 159 WQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMN-------DETIIFSWLPPHHDMGLIGCILTPI 231 (590)
T ss_dssp CCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCC-------TTCEEEECSCTTSHHHHHTTTHHHH
T ss_pred CCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCC-------CcCeEEEecCCCcchhhHHHHHHHH
Confidence 233456789999999999999999999999999999988877765532 7899999999999999965 88999
Q ss_pred HcCCeEEEeCCC----CHHHHHHHHhhcCCceEecchHHHHHHHhC---cccCCCCCCCceEEEEccCCCCHHHHHHHHH
Q 008749 264 AVSETAVFMERF----DFETMLKTVDKYKLTSMPVSPPLVVALTKS---ELTKKYDLSSLQYLSCGGAPLGKEVTDKFKE 336 (555)
Q Consensus 264 ~~g~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~ 336 (555)
+.|+++++.+++ ++..+++.++++++|++.++|.++..+.+. ......+++++|.+++||+++++++.++|.+
T Consensus 232 ~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~ 311 (590)
T 3kxw_A 232 YGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ 311 (590)
T ss_dssp HHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred hcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHH
Confidence 999999998765 789999999999999999999999888775 3344567899999999999999999999999
Q ss_pred HCC-----CCcEEcccCccccccccccCCCC-------------------------cccCCCCCcccccCCcEEEEEcCC
Q 008749 337 KFP-----SVEIIQGYGLTECGGLASSMRDS-------------------------EETKRHGSVGRLHELMEAKVVDPV 386 (555)
Q Consensus 337 ~~~-----~~~l~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~~~~~~~~~i~d~~ 386 (555)
.|+ ++++++.||+||++.+++..... +.....+++|+|+++ ++|+|++
T Consensus 312 ~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~ 389 (590)
T 3kxw_A 312 AFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPD 389 (590)
T ss_dssp HHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTT
T ss_pred HHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCC
Confidence 873 45799999999998876643211 112234678999998 8899988
Q ss_pred CCcccCCCCccEEEEeCCcccccccCCchhhhcccCC------CC--eeecCceEEEecCCcEEEEcccCCeeeeCCeee
Q 008749 387 TGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDS------EG--WLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQI 458 (555)
Q Consensus 387 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i 458 (555)
++++++.|+.|||+|+||+++.||+++++.|.+.|.. ++ ||+|||+|+++ ||.+++.||+||+||++|++|
T Consensus 390 ~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v 468 (590)
T 3kxw_A 390 TLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNH 468 (590)
T ss_dssp TCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTT
T ss_pred CCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEec
Confidence 8999999999999999999999999999999999853 24 99999999998 999999999999999999999
Q ss_pred ChHHHHHHH-hcCCCcc--eEEEEeeeCCCCCceEEEEEEeCCCC--CCCHHHHHHHHHhcCCC-CCccc-eEEEc--cc
Q 008749 459 PPAELEHLL-QSNPEIA--DAAVIPYPDEEAGQIPMAFVVRKPGS--SINEAQLMDFIAKQVAP-YKKIR-RVAFV--NS 529 (555)
Q Consensus 459 ~~~~Ie~~l-~~~~~i~--~~~v~~~~~~~~~~~l~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~~~~~--~~ 529 (555)
+|.+||++| ..+|.|. +++|++++++. ++.++++++..++. ..+.++++++++++|+. ++.|. .++++ ++
T Consensus 469 ~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~ 547 (590)
T 3kxw_A 469 YPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKA 547 (590)
T ss_dssp HHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTC
T ss_pred CHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCc
Confidence 999999999 7889998 79999988775 67788888887653 34567899999998875 67775 44444 89
Q ss_pred cCCCCCCcccHHHHHHHHhcCCCCC
Q 008749 530 IPKSEAGKILRRELVNHALSGNLSK 554 (555)
Q Consensus 530 lP~t~~GKv~r~~l~~~~~~~~~~~ 554 (555)
||+|++||++|++|++++.++++..
T Consensus 548 lP~t~sGKi~R~~L~~~~~~~~~~~ 572 (590)
T 3kxw_A 548 MPHTTSGKIRRNFCRKHLLDKTLPI 572 (590)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTCSCC
T ss_pred cCcCCCcHHHHHHHHHHHHcCCCce
Confidence 9999999999999999999998764
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=9.7e-73 Score=601.06 Aligned_cols=488 Identities=20% Similarity=0.307 Sum_probs=405.0
Q ss_pred CCCHHHHhhcccccCCCCCCCcEEEECC-CCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 008749 38 PLSVTQFTLSILHKSATTTAAPFLMNAA-TGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLL 116 (555)
Q Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~a~~~~~-~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~ 116 (555)
..|+.++|.++++++|+ .+++.+.. .++++||+||+++++++|+.|++ +|+++||+|+++++|+++++++++||+
T Consensus 20 ~~tl~~~l~~~a~~~p~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 95 (576)
T 3gqw_A 20 FPTLVDALDYAALSSAG---MNFYDRRCQLEDQLEYQTLKARAEAGAKRLLS-LNLKKGDRVALIAETSSEFVEAFFACQ 95 (576)
T ss_dssp CSSHHHHHHHHTTSSCE---EEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH-TCCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCCCC---eEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 36999999999999998 78876532 34799999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCC-------HHHHHHHhhhcCCeEEEEcCCccccCCC------CCeEEEeCCchhHHhhhccCCCCcc
Q 008749 117 SLGVVVSPANPLGS-------TSEISHQLHLSKPSIAFATSRTSHKLPP------NIRTVLVDSPEFLSLLSTQNQNDVV 183 (555)
Q Consensus 117 ~~G~~~v~v~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (555)
++|++++|+++.++ .+++.++++.+++++++++.+....+.. ....+. ..+.. .....
T Consensus 96 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~--- 166 (576)
T 3gqw_A 96 YAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLS---HAWFK---ALPEA--- 166 (576)
T ss_dssp HTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEE---HHHHH---TSCCC---
T ss_pred HhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecc---hhhhh---ccccc---
Confidence 99999999999998 7999999999999999998764332211 111111 11111 11110
Q ss_pred cCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHH-HHHHH
Q 008749 184 ISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFL-ALVRV 262 (555)
Q Consensus 184 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~ 262 (555)
........++++++|+|||||||.||+|+++|+++.+.+........... +++++++.+|++|.+|+. .++.+
T Consensus 167 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~------~~d~~l~~~p~~h~~g~~~~~~~~ 240 (576)
T 3gqw_A 167 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLR------PGDRCVSWLPFYHDMGLVGFLLTP 240 (576)
T ss_dssp CCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCC------TTCCEEECCCTTSHHHHHHHTHHH
T ss_pred ccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCC------CcceEEEcCCccccccHHHHHHHH
Confidence 12233456799999999999999999999999999988877655422233 789999999999999995 56778
Q ss_pred HHcCCeEEEeCC----CCHHHHHHHHhhcCCceEecchHHHHHHHhCcc---cCCCCCCCceEEEEccCCCCHHHHHHHH
Q 008749 263 VAVSETAVFMER----FDFETMLKTVDKYKLTSMPVSPPLVVALTKSEL---TKKYDLSSLQYLSCGGAPLGKEVTDKFK 335 (555)
Q Consensus 263 l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~l~~lr~v~~~G~~l~~~~~~~~~ 335 (555)
+..|+++++.+. +++..+++.++++++|++.++|+++..+.+... ....+++++|.+++||+++++++.++|.
T Consensus 241 l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~ 320 (576)
T 3gqw_A 241 VATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFA 320 (576)
T ss_dssp HHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHH
Confidence 889999888764 578899999999999999999999988766533 3345689999999999999999999999
Q ss_pred HHCC-----CCcEEcccCccccccccccCCCCccc--------------------------CCCCCcccccCCcEEEEEc
Q 008749 336 EKFP-----SVEIIQGYGLTECGGLASSMRDSEET--------------------------KRHGSVGRLHELMEAKVVD 384 (555)
Q Consensus 336 ~~~~-----~~~l~~~yG~tE~~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~~~i~d 384 (555)
+.|+ ++++++.||+||++.+++........ ....++|+|+++++++|+|
T Consensus 321 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 400 (576)
T 3gqw_A 321 ECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN 400 (576)
T ss_dssp HHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC
T ss_pred HHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC
Confidence 9874 78999999999998877654321110 0123789999999999999
Q ss_pred CCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCCCCeeecCceEEEecCCcEEEEcccCCeeeeCCeeeChHHHH
Q 008749 385 PVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQIPPAELE 464 (555)
Q Consensus 385 ~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie 464 (555)
+++++++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||+|++ +||++++.||+||+||++|++|+|.+||
T Consensus 401 -~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE 477 (576)
T 3gqw_A 401 -EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIE 477 (576)
T ss_dssp -TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHH
T ss_pred -CCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHH
Confidence 889999999999999999999999999998887765 7899999999999 7999999999999999999999999999
Q ss_pred HHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcC-CCCCccceEEEcc--ccCCCCCCcccHH
Q 008749 465 HLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQV-APYKKIRRVAFVN--SIPKSEAGKILRR 541 (555)
Q Consensus 465 ~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~~~~~~--~lP~t~~GKv~r~ 541 (555)
++|.++|+|.+++|++...+.. .+.++++.........+++++++++++ +.|+.|..+.+++ +||+|++||++|+
T Consensus 478 ~~l~~~p~V~~~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~ 555 (576)
T 3gqw_A 478 YIAEQEPEIHSGDAIAFVTAQE--KIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARA 555 (576)
T ss_dssp HHHTTSSSCCTTSEEEEECTTS--CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHH
T ss_pred HHHHhCcccccccEEEEEcCCc--cEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHH
Confidence 9999999999988888876643 344555544444445578999999988 7899999888876 9999999999999
Q ss_pred HHHHHHhc
Q 008749 542 ELVNHALS 549 (555)
Q Consensus 542 ~l~~~~~~ 549 (555)
+|++.+.+
T Consensus 556 ~l~~~~~~ 563 (576)
T 3gqw_A 556 EAKKRYQK 563 (576)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.6e-60 Score=493.95 Aligned_cols=390 Identities=18% Similarity=0.252 Sum_probs=316.4
Q ss_pred CCHHHHhhcccccCCCCCCCcEEEECC-----CC--ceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHH
Q 008749 39 LSVTQFTLSILHKSATTTAAPFLMNAA-----TG--RRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVL 111 (555)
Q Consensus 39 ~~~~~~~~~~~~~~p~~~~~~a~~~~~-----~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~ 111 (555)
.|+.++|.++++++|+ ++|+++.+ ++ +++||+||.++++++|+.|.+ .|+ +||+|+++++|+++++++
T Consensus 24 ~tl~~~l~~~a~~~pd---~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~~ 98 (480)
T 3t5a_A 24 RSLPAALRACARLQPH---DPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVVA 98 (480)
T ss_dssp CCHHHHHHHHHHHSTT---SEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHHH
T ss_pred ccHHHHHHHHHHhCCC---CceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHHH
Confidence 8999999999999999 99998752 12 799999999999999999998 896 999999999999999999
Q ss_pred HHHHHHhCCeEecCCC---CCCHHHHHHHhhhcCCeEEEEcCCccccCCC---------CCeEEEeCCchhHHhhhccCC
Q 008749 112 YFSLLSLGVVVSPANP---LGSTSEISHQLHLSKPSIAFATSRTSHKLPP---------NIRTVLVDSPEFLSLLSTQNQ 179 (555)
Q Consensus 112 ~lA~~~~G~~~v~v~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 179 (555)
+|||+++|+++||+++ .++.+++.++++.++++++|++......+.. ....+.++. .....
T Consensus 99 ~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-- 171 (480)
T 3t5a_A 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL-----LDLDA-- 171 (480)
T ss_dssp HHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG-----SCTTC--
T ss_pred HHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc-----ccccc--
Confidence 9999999999999999 7788999999999999999999865433211 011222211 00000
Q ss_pred CCcccCCCCcCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHH-HH
Q 008749 180 NDVVISPPAVVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGF-LA 258 (555)
Q Consensus 180 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~ 258 (555)
..........++++++|+|||||||.||+|+++|+++.+.+......+.... .....+++++++.+|++|.+|+ ..
T Consensus 172 --~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~pl~h~~g~~~~ 248 (480)
T 3t5a_A 172 --PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADT-DGIPPPNSALVSWLPFYHDMGLVIG 248 (480)
T ss_dssp --C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTT-TTCCCTTEEEEECCCTTSTTHHHHH
T ss_pred --ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcccc-ccCCCCCCeEEEeCCCcCccHHHHH
Confidence 0022334567789999999999999999999999999988887766654321 1111138999999999999997 67
Q ss_pred HHHHHHcCCeEEEeCCC----CHHHHHHHHhhcCCceEecchHHHHHHHhC----cccCCCCCCCceEEEEccCCCCHHH
Q 008749 259 LVRVVAVSETAVFMERF----DFETMLKTVDKYKLTSMPVSPPLVVALTKS----ELTKKYDLSSLQYLSCGGAPLGKEV 330 (555)
Q Consensus 259 ~~~~l~~g~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~~l~~lr~v~~~G~~l~~~~ 330 (555)
++.++..|+++++.++. ++..+++.++++++| +.++|+++..++.. ......++++||.+++||+++++++
T Consensus 249 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~ 327 (480)
T 3t5a_A 249 ICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAAT 327 (480)
T ss_dssp THHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHH
T ss_pred HHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHH
Confidence 89999999999998753 899999999999999 88999988877763 3344567899999999999999999
Q ss_pred HHHHHHHC-----CCCcEEcccCccccccccccCCCCcc-----------------------cCCCCCcccccCCcEEEE
Q 008749 331 TDKFKEKF-----PSVEIIQGYGLTECGGLASSMRDSEE-----------------------TKRHGSVGRLHELMEAKV 382 (555)
Q Consensus 331 ~~~~~~~~-----~~~~l~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~~~~~~~~~i 382 (555)
.++|.+.| +++.+++.||+||++.+++....... ....+++|+|++ ++++|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~i 406 (480)
T 3t5a_A 328 IKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRI 406 (480)
T ss_dssp HHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEE
T ss_pred HHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEE
Confidence 99999998 35689999999999987765432211 123458999999 99999
Q ss_pred EcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccC-----------CCCeeecCceEEEecCCcEEEEcc
Q 008749 383 VDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVD-----------SEGWLKTGDLCYFDSNGFLFIVDR 446 (555)
Q Consensus 383 ~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~l~~~GR 446 (555)
+|++++++++.|+.|||+|+|++++.||+++++.|.+.|+ .++||+|||+|+++ ||+|+++||
T Consensus 407 vd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 407 VDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred EcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 9987799999999999999999999999999999999985 56799999999996 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.5e-54 Score=428.75 Aligned_cols=316 Identities=18% Similarity=0.226 Sum_probs=269.0
Q ss_pred CCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEE
Q 008749 192 QSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVF 271 (555)
Q Consensus 192 ~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~ 271 (555)
.+++++|+|||||||.||+|++||+++.+.+......+... ++|++++.+|++|++|+..++.++..|+++++
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-------~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~ 108 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLG-------PGTRALVCLNVGYIAGLMMLVRGMELDWELTV 108 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCC-------TTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCC-------CCCEEEEECChHHHHHHHHHHHHHHhCcEEEe
Confidence 47899999999999999999999999999888877766533 78999999999999999889999999999998
Q ss_pred eCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcccCccc
Q 008749 272 MERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQGYGLTE 351 (555)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE 351 (555)
.++. ...++.++++++|++.++|+++..+++.... ..+++++|.+++||+++++++.+++++. ++++++.||+||
T Consensus 109 ~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE 183 (358)
T 4gs5_A 109 TEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTE 183 (358)
T ss_dssp ECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGG
T ss_pred cCcc--ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEecccccc
Confidence 8642 1346778999999999999999999887643 3357899999999999999999999874 899999999999
Q ss_pred cccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCCCCeeecCc
Q 008749 352 CGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGD 431 (555)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD 431 (555)
++..++.... .....+.+|.+.||+.+.+.+ .||++++|+.. .++||+|||
T Consensus 184 t~~~~~~~~~--~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGD 234 (358)
T 4gs5_A 184 TVSHVALKAL--NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTND 234 (358)
T ss_dssp GSSEEEEEEC--SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEE
T ss_pred ccceeecccc--cccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCC
Confidence 9876665322 223467889999998887744 49999998642 578999999
Q ss_pred eEEEecCCcEEEEcccCCeeeeCCeeeChHHHHHHHh---cCCCcceEEEE-eeeCCCCCceEEEEEEeCCCCCCCHHHH
Q 008749 432 LCYFDSNGFLFIVDRLKELIKYKAYQIPPAELEHLLQ---SNPEIADAAVI-PYPDEEAGQIPMAFVVRKPGSSINEAQL 507 (555)
Q Consensus 432 ~~~~~~~g~l~~~GR~~d~i~~~G~~i~~~~Ie~~l~---~~~~i~~~~v~-~~~~~~~~~~l~~~v~~~~~~~~~~~~l 507 (555)
+|++++|| +.++||+||+||++|++|+|.+||++|. ++|.|.+++|+ +.+++..++.++++|+.... ....++|
T Consensus 235 lg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l 312 (358)
T 4gs5_A 235 LVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERL 312 (358)
T ss_dssp EEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHH
T ss_pred ccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHH
Confidence 99999988 6677999999999999999999998774 57999998876 56777788888888875433 4456789
Q ss_pred HHHHHhcCCCCCccceEEEccccCCCCCCcccHHHHHHHHhcC
Q 008749 508 MDFIAKQVAPYKKIRRVAFVNSIPKSEAGKILRRELVNHALSG 550 (555)
Q Consensus 508 ~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKv~r~~l~~~~~~~ 550 (555)
+++++++|+.|++|+.++++++||+|++||++|++|++++.+.
T Consensus 313 ~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 313 TAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred HHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999998765
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.3e-50 Score=413.05 Aligned_cols=330 Identities=19% Similarity=0.200 Sum_probs=272.4
Q ss_pred cCCC-CCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHH-HHHHHHHHcC
Q 008749 189 VVNQ-SDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGF-LALVRVVAVS 266 (555)
Q Consensus 189 ~~~~-~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~g 266 (555)
...+ +++++++|||||||.||+|+++|+++.+........+...+.. ++++++..+|+.|..+. ..++.++..|
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~~l~~G 156 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIR----KTDVFQNSSGYGMFTGGLGFQYGAERLG 156 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCC----TTSEEEECSCCTTCHHHHHHHHHHHHHT
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCC----CCCEEEECcccccchhHHHHHHHHHHcC
Confidence 3455 8999999999999999999999999987776654433211111 78999999998655555 6778889999
Q ss_pred CeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCC--CCCceEEEEccCCCCHHHHHHHHHHCCCCcEE
Q 008749 267 ETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYD--LSSLQYLSCGGAPLGKEVTDKFKEKFPSVEII 344 (555)
Q Consensus 267 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~ 344 (555)
+++++.+..++..+++.|+++++|+++++|+++..|++.......+ ++++|.+++|||++++++.+++.+.| +++++
T Consensus 157 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~ 235 (436)
T 3qov_A 157 CLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAY 235 (436)
T ss_dssp CEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEE
T ss_pred CEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEE
Confidence 9999988889999999999999999999999999998876555544 78999999999999999999999999 89999
Q ss_pred cccCccccccccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCCC
Q 008749 345 QGYGLTECGGLASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSE 424 (555)
Q Consensus 345 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 424 (555)
+.||+||+++.+...... .....|.+.+++.++|+|++++++++.|+.|||+++|.. ...+ ..
T Consensus 236 ~~YG~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~ 298 (436)
T 3qov_A 236 NSFGMTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PL 298 (436)
T ss_dssp EEEEEGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CC
T ss_pred ecCcchhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eE
Confidence 999999995432221111 122367778899999999999999999999999999842 2233 67
Q ss_pred CeeecCceEEEecCC------c---EEEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEE
Q 008749 425 GWLKTGDLCYFDSNG------F---LFIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVV 495 (555)
Q Consensus 425 ~~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~ 495 (555)
+||+|||+|+++++| + +++.||.||+||++|++|+|.+||++|.++|+|.+++|++..++..++.++++|+
T Consensus 299 ~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~ 378 (436)
T 3qov_A 299 IRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVE 378 (436)
T ss_dssp CSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 899999999999998 5 6999999999999999999999999999999999999999988877889999999
Q ss_pred eCCCCCCC----HHHHHHHHHhcCCCC-CccceEEEcc--ccCCCCCCcccHHH
Q 008749 496 RKPGSSIN----EAQLMDFIAKQVAPY-KKIRRVAFVN--SIPKSEAGKILRRE 542 (555)
Q Consensus 496 ~~~~~~~~----~~~l~~~l~~~l~~~-~~p~~~~~~~--~lP~t~~GKv~r~~ 542 (555)
+. +...+ .++++++++++|+.+ +.|..+++++ +||+|+ ||++|..
T Consensus 379 ~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 379 LS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred Ec-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 98 55554 678999999999988 8999998988 999999 9999853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.3e-50 Score=414.03 Aligned_cols=332 Identities=19% Similarity=0.212 Sum_probs=275.3
Q ss_pred CCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecCh-hHHHHHHHHHHHHHcCCe
Q 008749 190 VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPL-FHVFGFLALVRVVAVSET 268 (555)
Q Consensus 190 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~ 268 (555)
..++++++++|||||||.||+|+++|+++.+........+...+.. ++++++..+|+ +|..++...+.++..|++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~----~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~ 164 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGR----PGDTLHNAFGYGLFTGGLGIHYGAERLGCM 164 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCC----TTCEEEECSCCSSSHHHHHHHHHHHHHTCE
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCC----CCCEEEEeccCcccccHHHHHHHHHHcCCE
Confidence 4668899999999999999999999999987665544321111111 78999999998 577777778889999999
Q ss_pred EEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCC--CCCceEEEEccCCCCHHHHHHHHHHCCCCcEEcc
Q 008749 269 AVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYD--LSSLQYLSCGGAPLGKEVTDKFKEKFPSVEIIQG 346 (555)
Q Consensus 269 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~~~ 346 (555)
+++.+.++++.+++.|+++++|++.++|+++..|++.....+.+ ++++|.+++||+++++++.+++.+.| ++++++.
T Consensus 165 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~ 243 (443)
T 2y4o_A 165 VVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDI 243 (443)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEE
T ss_pred EEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEec
Confidence 99888889999999999999999999999999998865544433 47999999999999999999999998 8999999
Q ss_pred cCcccc-cc-ccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccCCC
Q 008749 347 YGLTEC-GG-LASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSE 424 (555)
Q Consensus 347 yG~tE~-~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 424 (555)
||+||+ +. ++..+.. .....+.+.+++.++|+|++++++++.|+.|||+++|. +.+.+ +.
T Consensus 244 YG~TE~~g~~~~~~~~~-----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~ 305 (443)
T 2y4o_A 244 YGLSEVMGPGVACECVE-----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PV 305 (443)
T ss_dssp EEETTTTEEEEEEECTT-----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CC
T ss_pred cCchhhcCCeEEeccCC-----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hh
Confidence 999997 43 3332211 11125567789999999988899999999999999973 22334 57
Q ss_pred CeeecCceEEEecC-CcE-----EEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCC
Q 008749 425 GWLKTGDLCYFDSN-GFL-----FIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKP 498 (555)
Q Consensus 425 ~~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~ 498 (555)
+||+|||+|+++++ |++ ++.||.||+||++|++|+|.+||++|.++|+|.+++|+++.++..++.++++|++.+
T Consensus 306 ~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~ 385 (443)
T 2y4o_A 306 IRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRS 385 (443)
T ss_dssp SSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECH
T ss_pred heeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECC
Confidence 89999999999999 986 899999999999999999999999999999999999998877666788899999875
Q ss_pred --C---CCCCHHHHHHHHHhcCCCC-CccceEEEc--cccCCCCCCcccHHHHH
Q 008749 499 --G---SSINEAQLMDFIAKQVAPY-KKIRRVAFV--NSIPKSEAGKILRRELV 544 (555)
Q Consensus 499 --~---~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GKv~r~~l~ 544 (555)
+ ...+.++++++|+++|+.| ..|..+.++ ++||+|++||++|+..+
T Consensus 386 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 386 EAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 2 2234578999999999887 488877777 69999999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2.1e-49 Score=406.04 Aligned_cols=327 Identities=20% Similarity=0.220 Sum_probs=275.0
Q ss_pred CCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhh--cCCCCCCCCCCCCEEEEecCh-hHHHHHHHHHHHHHcC
Q 008749 190 VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVE--YGANPAEPQPSGEVSLITLPL-FHVFGFLALVRVVAVS 266 (555)
Q Consensus 190 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g 266 (555)
..++++++++|||||||.||+|+++|+++........... .... ++++++..+|+ +|..++...+.++..|
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~------~~d~~~~~~~~~~~~~~~~~~~~~~~~G 160 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGAR------RGDKVHVSYGYGLFTGGLGAHYGAERAG 160 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCC------TTCEEEECSCCSSSHHHHHHHHHHHHTT
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCC------CCCEEEEcccccccccchHHHHHHHHcC
Confidence 4568999999999999999999999999987765444321 1122 78999999998 7888887788999999
Q ss_pred CeEEEeCCCCHHHHHHHHhhcCCceEecchHHHHHHHhCcccCCCC--CCCceEEEEccCCCCHHHHHHHHHHCCCCcEE
Q 008749 267 ETAVFMERFDFETMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYD--LSSLQYLSCGGAPLGKEVTDKFKEKFPSVEII 344 (555)
Q Consensus 267 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~l~ 344 (555)
+++++.+.++++.+++.|+++++|+++++|+++..|++.....+.+ ++++|.+++||+++++++.+++.+.| +++++
T Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~ 239 (437)
T 2y27_A 161 LTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAV 239 (437)
T ss_dssp CEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEE
T ss_pred CEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEE
Confidence 9999888889999999999999999999999999998865544433 47899999999999999999999988 89999
Q ss_pred cccCcccc-cc-ccccCCCCcccCCCCCcccccCCcEEEEEcCCCCcccCCCCccEEEEeCCcccccccCCchhhhcccC
Q 008749 345 QGYGLTEC-GG-LASSMRDSEETKRHGSVGRLHELMEAKVVDPVTGDALSPAQKGELWLRGPTIMKGYIGDNKATIETVD 422 (555)
Q Consensus 345 ~~yG~tE~-~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 422 (555)
+.||+||+ +. ++..+.. .....+.+.+++.++|+|++++++++.|+.|||+++|. +.+.+
T Consensus 240 ~~YG~TE~~g~~~~~~~~~-----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~- 301 (437)
T 2y27_A 240 DIYGLSEVMGPGVASECVE-----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL- 301 (437)
T ss_dssp EEEEETTTTEEEEEECCTT-----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-
T ss_pred ecCCchhhcCCeeEEecCC-----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-
Confidence 99999997 43 3333211 11125667789999999988899999999999999973 22334
Q ss_pred CCCeeecCceEEEec-CCcE-----EEEcccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEe
Q 008749 423 SEGWLKTGDLCYFDS-NGFL-----FIVDRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVR 496 (555)
Q Consensus 423 ~~~~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~ 496 (555)
+++||+|||+|++++ +|++ ++.||.||+||++|++|+|.+||++|.++|+|.+++|+++.++..++.++++|++
T Consensus 302 ~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~ 381 (437)
T 2y27_A 302 PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEP 381 (437)
T ss_dssp CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECB
T ss_pred hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEE
Confidence 578999999999999 6985 8999999999999999999999999999999999999988777677889999998
Q ss_pred CCCCC---CCHHHHHHHHHhcCCCC-CccceEEEc--cccCCCCCCcccHHH
Q 008749 497 KPGSS---INEAQLMDFIAKQVAPY-KKIRRVAFV--NSIPKSEAGKILRRE 542 (555)
Q Consensus 497 ~~~~~---~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GKv~r~~ 542 (555)
.++.. .+.++++++|+++|+.| .+|..+.++ ++||+|+ ||++|+.
T Consensus 382 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 382 CPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp CTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred CCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 76643 34578999999999988 588888887 6999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.98 E-value=3.6e-32 Score=271.78 Aligned_cols=242 Identities=17% Similarity=0.154 Sum_probs=185.1
Q ss_pred cCCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecCh-hHHHHHHHHHHHHHcCC
Q 008749 189 VVNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPL-FHVFGFLALVRVVAVSE 267 (555)
Q Consensus 189 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~ 267 (555)
...++++++++|||||||.||+|+++|+++.+...+........+.. +++++++.+|+ +|..|+...+.++..|+
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~----~~d~~l~~~p~g~~~~g~~~~~~~~~~G~ 162 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGR----PSGNTLAAIPTGPHIVGAINKERALRLGG 162 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTC----CCCEEEECSCCTTCHHHHHHHHHHHHTTS
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCC----CcceEEEecCCCchhhhHHHHHHHHHcCC
Confidence 34778999999999999999999999999998887654433222111 78999999999 99999987777788998
Q ss_pred eEEEeCCCCHH-----------------------HHHHHHhhcCCceEecchHHHHHHHhCcccCCCCCCCceEEEEccC
Q 008749 268 TAVFMERFDFE-----------------------TMLKTVDKYKLTSMPVSPPLVVALTKSELTKKYDLSSLQYLSCGGA 324 (555)
Q Consensus 268 ~~v~~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~G~ 324 (555)
+++...+++. .+++.++++++|++.++|+++..|++.......+++++|.+++|||
T Consensus 163 -~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe 241 (369)
T 3hgu_A 163 -MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGT 241 (369)
T ss_dssp -CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESS
T ss_pred -EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCc
Confidence 6666677777 8888999999999999999999998875433344678999999999
Q ss_pred CCCHHHHHHHH-HHCCCCcEEcccCccccccccccCCCCcccCCCCCcccc------cCCcEEEEEcCCCCcccCCCCcc
Q 008749 325 PLGKEVTDKFK-EKFPSVEIIQGYGLTECGGLASSMRDSEETKRHGSVGRL------HELMEAKVVDPVTGDALSPAQKG 397 (555)
Q Consensus 325 ~l~~~~~~~~~-~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~G 397 (555)
++++++++++. +.||++++++.||+||+++++..+.. .++|++ +++++++|+|++++++++.|+.|
T Consensus 242 ~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~G 314 (369)
T 3hgu_A 242 ELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERG 314 (369)
T ss_dssp CCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEE
T ss_pred cCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCce
Confidence 99999999999 99989999999999999876644221 147888 99999999997799999999999
Q ss_pred EEEEeCCcccccccCCchhhhcccCCCCeeecCceEEEecC--C-------cEEEEcccCCeeeeCCe
Q 008749 398 ELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSN--G-------FLFIVDRLKELIKYKAY 456 (555)
Q Consensus 398 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 456 (555)
||+|++..... + -..|+|||++.+.+. | .+..++|.++..|+.|.
T Consensus 315 El~vt~l~~~~------------~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 315 NVIVTHLSPWA------------F--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEETTE------------E--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEEcCccc------------c--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 99999743111 1 124899999998653 3 35677888888888774
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.55 E-value=6e-15 Score=118.18 Aligned_cols=95 Identities=23% Similarity=0.251 Sum_probs=71.8
Q ss_pred cccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCC----CHHHHHHHHHhcCC-CCC
Q 008749 445 DRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSI----NEAQLMDFIAKQVA-PYK 519 (555)
Q Consensus 445 GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~----~~~~l~~~l~~~l~-~~~ 519 (555)
||.||+|+++|.+|+|.+||++|.++|+|.+++++++.++..++.+++++++ ++... +.+++.++|++++. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999988888877777889999988 55322 33455555555543 223
Q ss_pred ccceEEEcc--ccCCCCCCcccHH
Q 008749 520 KIRRVAFVN--SIPKSEAGKILRR 541 (555)
Q Consensus 520 ~p~~~~~~~--~lP~t~~GKv~r~ 541 (555)
.+..+.+++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 444677776 99999 9999873
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.55 E-value=6.8e-15 Score=118.19 Aligned_cols=95 Identities=23% Similarity=0.250 Sum_probs=72.6
Q ss_pred cccCCeeeeCCeeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---HHHHHHHHhcCCCC-Cc
Q 008749 445 DRLKELIKYKAYQIPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINE---AQLMDFIAKQVAPY-KK 520 (555)
Q Consensus 445 GR~~d~i~~~G~~i~~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~---~~l~~~l~~~l~~~-~~ 520 (555)
.|.||||+++|.+|+|.+||++|.++|+|.+++++++.++..++.+.++|+..++...+. +++.+.+++++..+ .+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 499999999999999999999999999999999999999988999999999887765554 34445555544322 23
Q ss_pred cceEEEc--cccCCCCCCcccH
Q 008749 521 IRRVAFV--NSIPKSEAGKILR 540 (555)
Q Consensus 521 p~~~~~~--~~lP~t~~GKv~r 540 (555)
+..+.++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 3345555 689998 699987
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=99.03 E-value=2.3e-09 Score=109.78 Aligned_cols=134 Identities=10% Similarity=0.139 Sum_probs=88.3
Q ss_pred CCC---ceEEEEccCCCCHHHHHHHHHHCCCCcEE-cccCccccccccccCCCCcccCCCCCccc-cc-CCcEEEEEcCC
Q 008749 313 LSS---LQYLSCGGAPLGKEVTDKFKEKFPSVEII-QGYGLTECGGLASSMRDSEETKRHGSVGR-LH-ELMEAKVVDPV 386 (555)
Q Consensus 313 l~~---lr~v~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~-~~~~~~i~d~~ 386 (555)
+++ +.+++.||- ..-++.++..+++..++ ..|++||+- ++... .+ ...+...+. .+ ..+-.+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~--~p-~~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINL--DP-LCKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECS--CT-TSCGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeecc--CC-CCCcccCceeecCCcEEEEEEecc
Confidence 466 555555663 33334455555678888 999999953 23221 11 111122222 12 23555677632
Q ss_pred CC--------cccCCCCccEEEEeCCcccccccCCchhhhcccCCCCeeecCceEEEec----CCcEEEEcccCCeeeeC
Q 008749 387 TG--------DALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDS----NGFLFIVDRLKELIKYK 454 (555)
Q Consensus 387 ~~--------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~ 454 (555)
+. ..+..|+.+||+++..+ |.+ .|++||+++... ...+.+.||.++++.+.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 21 34578999999999742 322 299999999975 35799999999999999
Q ss_pred CeeeChHHHHHHHhcC
Q 008749 455 AYQIPPAELEHLLQSN 470 (555)
Q Consensus 455 G~~i~~~~Ie~~l~~~ 470 (555)
|++++..+||.+|.+.
T Consensus 432 Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 432 SDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SCCEEHHHHHHHHHHC
T ss_pred eeECCHHHHHHHHHHH
Confidence 9999999999999854
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.99 E-value=4.3e-09 Score=107.90 Aligned_cols=133 Identities=12% Similarity=0.173 Sum_probs=87.0
Q ss_pred CCCce---EEEEccCCCCHHHHHHHHHHCCCCcEE-cccCccccccccccCCCCcccCCCCCccc-ccC-CcEEEEEcCC
Q 008749 313 LSSLQ---YLSCGGAPLGKEVTDKFKEKFPSVEII-QGYGLTECGGLASSMRDSEETKRHGSVGR-LHE-LMEAKVVDPV 386 (555)
Q Consensus 313 l~~lr---~v~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~i~d~~ 386 (555)
++++| +++.||- ..-++.++..+++..++ ..|++||+- ++... .+ ...++..+. .+| ..-++.++.+
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~--~p-~~~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNL--NP-MSKPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECS--CT-TSCGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeec--CC-CCCcccCceeecCCcEEEEEEecc
Confidence 46644 4555553 33334455555577777 899999963 33321 11 111122222 222 3455566533
Q ss_pred CC---------------cccCCCCccEEEEeCCcccccccCCchhhhcccCCCCeeecCceEEEec----CCcEEEEccc
Q 008749 387 TG---------------DALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDS----NGFLFIVDRL 447 (555)
Q Consensus 387 ~~---------------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~ 447 (555)
+. ..++.|+.+||+++... |+++ |++||++++.. ...+.+.||.
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~ 436 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRK 436 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEec
Confidence 21 35678999999998632 4433 99999999974 4679999999
Q ss_pred CCeeeeCCeeeChHHHHHHHhc
Q 008749 448 KELIKYKAYQIPPAELEHLLQS 469 (555)
Q Consensus 448 ~d~i~~~G~~i~~~~Ie~~l~~ 469 (555)
++++.+.|++++..+||.+|.+
T Consensus 437 ~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 437 NVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp TCCBCSSSCCBCHHHHHHHHHH
T ss_pred CCeEEccccCCCHHHHHHHHHH
Confidence 9999999999999999999873
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.98 E-value=1.1e-08 Score=104.54 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=97.5
Q ss_pred CCCceE--EEEccCCCCHHHHHHHHHHCCCCcEE-cccCccccccccccCCCCcccCCCCCccc-ccCC-cEEEEEcCCC
Q 008749 313 LSSLQY--LSCGGAPLGKEVTDKFKEKFPSVEII-QGYGLTECGGLASSMRDSEETKRHGSVGR-LHEL-MEAKVVDPVT 387 (555)
Q Consensus 313 l~~lr~--v~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~~ 387 (555)
+++++. ++++|.. ..-++.+++.+++..++ ..|++||+ .++.. ..+ ...++..+. .+|+ .-++.++.++
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~--~~p-~~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAAN--VTP-RLSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEEC--CCT-TSCTTTCCEEECTTSCEEEEEEC--
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeee--cCC-CCCccccceeecCCcEEEEEEeccc
Confidence 567753 3334422 23334555555678887 99999996 33332 111 112222222 2233 4445664222
Q ss_pred C----------cccCCCCccEEEEeCCcccccccCCchhhhcccCCCCeeecCceEEEecC----CcEEEEcccCCeeee
Q 008749 388 G----------DALSPAQKGELWLRGPTIMKGYIGDNKATIETVDSEGWLKTGDLCYFDSN----GFLFIVDRLKELIKY 453 (555)
Q Consensus 388 ~----------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~l~~~GR~~d~i~~ 453 (555)
. ..++.|+.+||+++... |.+ .|++||+++...- ..+.+.||.++++.+
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 1 35678999999999742 322 2999999999642 579999999999999
Q ss_pred CCeeeChHHHHHHHhc------C--CCcceEEEEeeeCCCCCceEEEEEEeC
Q 008749 454 KAYQIPPAELEHLLQS------N--PEIADAAVIPYPDEEAGQIPMAFVVRK 497 (555)
Q Consensus 454 ~G~~i~~~~Ie~~l~~------~--~~i~~~~v~~~~~~~~~~~l~~~v~~~ 497 (555)
.|++++..+||.++.+ . -.|.+..+....... ...-+.+++..
T Consensus 438 ~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~-p~hyv~~wE~~ 488 (581)
T 4epl_A 438 NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTD-PGHYAIFWEIS 488 (581)
T ss_dssp SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSS-SCEEEEEEEES
T ss_pred eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCC-CCcEEEEEeec
Confidence 9999999999998874 1 245666665432222 22334455654
No 42
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.22 E-value=1.3 Score=44.00 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=66.2
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCc--HHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFE--IPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIA 146 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~i 146 (555)
.+|.+.+...+..+++.+.. .|+.++|++...++-+.. .....++++..|+.+++++.. ..+.+...+++.++.++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 58999999888888888887 899999999998886433 244568888899999887654 78888999999999988
Q ss_pred EEcCC
Q 008749 147 FATSR 151 (555)
Q Consensus 147 i~~~~ 151 (555)
+..+.
T Consensus 189 ~~~Ps 193 (443)
T 2y4o_A 189 LVTPS 193 (443)
T ss_dssp EECHH
T ss_pred EECHH
Confidence 87543
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=90.94 E-value=0.95 Score=45.04 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=66.0
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCc--HHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFE--IPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIA 146 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~i 146 (555)
.+|.+.+...+..+++.+.. .|+.++|++...++.+.. .....++++..|+.+++++. .+.+.+...++..++.++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 58999999888888888887 899999999998886433 23456888899999988765 478889999999999988
Q ss_pred EEcCC
Q 008749 147 FATSR 151 (555)
Q Consensus 147 i~~~~ 151 (555)
+..+.
T Consensus 187 ~~~Ps 191 (437)
T 2y27_A 187 MVTPS 191 (437)
T ss_dssp EECHH
T ss_pred EECHH
Confidence 87553
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=87.80 E-value=1.8 Score=43.02 Aligned_cols=81 Identities=16% Similarity=0.073 Sum_probs=66.1
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSF--EIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIA 146 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~i 146 (555)
.+|.+.+...+..+++.+.. .++.++|++...++-+. ..+..+++++..|+.+++.+. ...+.+...++..++.++
T Consensus 105 ~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 105 VHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 58999999999889888887 89999999999887543 334467888999999988764 467888899999999988
Q ss_pred EEcCC
Q 008749 147 FATSR 151 (555)
Q Consensus 147 i~~~~ 151 (555)
+..+.
T Consensus 183 ~~~P~ 187 (436)
T 3qov_A 183 HAIPS 187 (436)
T ss_dssp ECCHH
T ss_pred EECHH
Confidence 86543
No 45
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=76.18 E-value=6.4 Score=37.83 Aligned_cols=82 Identities=9% Similarity=-0.089 Sum_probs=59.3
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCc--HHHHHHHHHHhCCeEecCCCCCCHH--------------
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFE--IPVLYFSLLSLGVVVSPANPLGSTS-------------- 132 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~v~~~~~~~-------------- 132 (555)
.+|.+.+...+..+++.+.. .|+.++|++...++-+.. -....++++..|+.+++.+ ..+.
T Consensus 110 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 110 VAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 58999999888877777777 899999999999887433 2334455588898665543 3444
Q ss_pred ---------HHHHHhhhcCCeEEEEcCCcc
Q 008749 133 ---------EISHQLHLSKPSIAFATSRTS 153 (555)
Q Consensus 133 ---------~l~~~l~~~~~~~ii~~~~~~ 153 (555)
.+...+++.++.+++..+...
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~ 216 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVL 216 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHH
Confidence 666688888988888765443
No 46
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=75.52 E-value=4 Score=39.22 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=52.6
Q ss_pred CcEEEECCCCc----eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCCCCCHH
Q 008749 58 APFLMNAATGR----RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEI-PVLYFSLLSLGVVVSPANPLGSTS 132 (555)
Q Consensus 58 ~~a~~~~~~~~----~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~v~~~~~~~ 132 (555)
.+.+..++++. .+|++.+...+..++. .++++++|++...+|-+..+ +..++..+..|+..+..++....
T Consensus 41 ~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~- 115 (358)
T 4gs5_A 41 FVLHTSGSTGMPKPITVTRAQLAASAAMTGK----ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP- 115 (358)
T ss_dssp EEEEEECTTSSEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT-
T ss_pred EEEECCcccccCcEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH-
Confidence 55555666663 6999998776655443 36889999999888766433 33445566778777766654322
Q ss_pred HHHHHhhhcCCeEEEE
Q 008749 133 EISHQLHLSKPSIAFA 148 (555)
Q Consensus 133 ~l~~~l~~~~~~~ii~ 148 (555)
...++..++.++..
T Consensus 116 --~~~i~~~~~t~~~~ 129 (358)
T 4gs5_A 116 --LAGLDHADFDFVAM 129 (358)
T ss_dssp --TTTCSSCCCSEEEE
T ss_pred --HHHHHHhCCeEEEc
Confidence 23445555555544
No 47
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=67.60 E-value=18 Score=36.36 Aligned_cols=78 Identities=6% Similarity=0.020 Sum_probs=59.4
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEI-PVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAF 147 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii 147 (555)
.+|++.+...+.... .. +++.++|++...+|-...+ +..+++++..|+..+..+ ..+++.+...+++.++.++.
T Consensus 182 ~~th~~~~~~~~~~~---~~-~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 256 (501)
T 3ipl_A 182 PQTFRNHYASAIGCK---ES-LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHIS 256 (501)
T ss_dssp EEEHHHHHHHHHHHH---HH-TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEE
T ss_pred EEeHHHHHHHHHHHH---Hh-hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEE
Confidence 689998877665543 33 6889999999888776433 234677888899988775 57889999999999999888
Q ss_pred EcCC
Q 008749 148 ATSR 151 (555)
Q Consensus 148 ~~~~ 151 (555)
..+.
T Consensus 257 ~~P~ 260 (501)
T 3ipl_A 257 LVPQ 260 (501)
T ss_dssp ECHH
T ss_pred chHH
Confidence 7543
No 48
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=64.34 E-value=1e+02 Score=31.04 Aligned_cols=102 Identities=9% Similarity=-0.039 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAV 270 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 270 (555)
.++.+|++....+ ....+|.+.+...+..++..+...+.. +++++...++-..- .+..++.++..|+..+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~----~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~v 100 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVG----VGDRVATLGFNHFR-HLEAYFAVPGMGAVLH 100 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECCSSHH-HHHHHHHHHHTTCEEE
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCcHH-HHHHHHHHHhcCcEEE
Confidence 3566676643221 235689999988777776655433222 78999988886542 3467788889999888
Q ss_pred EeC-CCCHHHHHHHHhhcCCceEecchHHHHHH
Q 008749 271 FME-RFDFETMLKTVDKYKLTSMPVSPPLVVAL 302 (555)
Q Consensus 271 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 302 (555)
.++ ....+.+...++..++..+++.+.....+
T Consensus 101 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 101 TANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ecCcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 876 47789999999999999999887655443
No 49
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=64.06 E-value=21 Score=36.46 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=65.9
Q ss_pred CcEEEEC---CCC----ceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEecCCCC
Q 008749 58 APFLMNA---ATG----RRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIP--VLYFSLLSLGVVVSPANPL 128 (555)
Q Consensus 58 ~~a~~~~---~~~----~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~--~~~lA~~~~G~~~v~v~~~ 128 (555)
.++++-- +++ -.+|.+.+...+......+.. .++.++|++...+|-...+- ..+++++ .|+..+..+ .
T Consensus 193 d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp CEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 5666643 233 369999988777666554443 68899999988887765443 3356777 999988775 5
Q ss_pred CCHHHHHHHhhhcCCeEEEEcCC
Q 008749 129 GSTSEISHQLHLSKPSIAFATSR 151 (555)
Q Consensus 129 ~~~~~l~~~l~~~~~~~ii~~~~ 151 (555)
..++.+...+++.++.+++..+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~ 292 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPT 292 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHH
Confidence 78899999999999998887553
No 50
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=63.71 E-value=22 Score=36.10 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=59.9
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPV---LYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSI 145 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~---~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ 145 (555)
.+|.+.+...+..... . .++.++|++...+|-+..+-. .+++++..|+..+..+ ...++.+...+++.++.+
T Consensus 201 ~~th~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 275 (539)
T 1mdb_A 201 PRTHDDYIYSLKRSVE---V-CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTI 275 (539)
T ss_dssp EEEHHHHHHHHHHHHH---H-HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSE
T ss_pred EEehHHHHHHHHHHHH---h-hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeE
Confidence 6999988777655433 3 578899999988886654433 4788899999988765 567889999999999998
Q ss_pred EEEcCC
Q 008749 146 AFATSR 151 (555)
Q Consensus 146 ii~~~~ 151 (555)
+...+.
T Consensus 276 ~~~~P~ 281 (539)
T 1mdb_A 276 TALVPP 281 (539)
T ss_dssp EEECHH
T ss_pred EEccHH
Confidence 887553
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=63.24 E-value=27 Score=35.16 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=57.6
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHH--HHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVL--YFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIA 146 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~--~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~i 146 (555)
.+|.+.+...+...+. . +++.++|++...+|-...+-.. +++++ .|+..+..+ ......+...++..++.++
T Consensus 189 ~~sh~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 189 VHTHESVHSAASSWAS---T-IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEHHHHHHHHHHHHH---H-SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCEE
T ss_pred eeeHHHHHHHHHHHHH---h-cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeEE
Confidence 6999988777655443 2 6889999999988876554333 45555 898888774 6788999999999999988
Q ss_pred EEcCC
Q 008749 147 FATSR 151 (555)
Q Consensus 147 i~~~~ 151 (555)
...+.
T Consensus 263 ~~~P~ 267 (517)
T 3r44_A 263 GAVPA 267 (517)
T ss_dssp EECHH
T ss_pred EeHHH
Confidence 87553
No 52
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=62.83 E-value=24 Score=35.83 Aligned_cols=78 Identities=12% Similarity=0.018 Sum_probs=60.0
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPV---LYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSI 145 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~---~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ 145 (555)
.+|.+.+...+...+. . .++.++|++...+|.+..+-. .+++++..|+..+..+ ...+..+...++..++.+
T Consensus 210 ~~sh~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 284 (544)
T 3o83_A 210 PRTHNDYDYSVRASAE---I-CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNM 284 (544)
T ss_dssp EEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred EechHHHHHHHHHHHH---H-hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCE
Confidence 6899998877665543 2 688999999999886654433 3788888999888765 467888889999999998
Q ss_pred EEEcCC
Q 008749 146 AFATSR 151 (555)
Q Consensus 146 ii~~~~ 151 (555)
+...+.
T Consensus 285 ~~~~P~ 290 (544)
T 3o83_A 285 ASLVPS 290 (544)
T ss_dssp EEECHH
T ss_pred EEechH
Confidence 887553
No 53
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=62.38 E-value=76 Score=32.11 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCC-CCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeE
Q 008749 191 NQSDAAVLLYSSGT-TGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETA 269 (555)
Q Consensus 191 ~~~~~a~i~~TSGT-TG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~ 269 (555)
.++.+|++....+. .+ ..-.+|.+.+...+..++..+...+.. +++++...++-... -+..++.++..|+..
T Consensus 32 ~p~~~A~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~Gv~----~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~ 104 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSE--FPESMNFLEICEVTKKLASGISRKGVR----KGEHVGVCIPNSID-YVMTIYALWRVAATP 104 (549)
T ss_dssp HTTSEEEEEESSCCCCS--SCSEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECCSSHH-HHHHHHHHHHTTCEE
T ss_pred CCCceEEEeCCCccccc--ccceeeHHHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCHH-HHHHHHHHHHhCCEE
Confidence 45777776553221 12 124689999988877777665433322 78999988876543 346778889999998
Q ss_pred EEeC-CCCHHHHHHHHhhcCCceEecchHHHHHH
Q 008749 270 VFME-RFDFETMLKTVDKYKLTSMPVSPPLVVAL 302 (555)
Q Consensus 270 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 302 (555)
+.++ ....+.+...++..++..++..+.....+
T Consensus 105 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 105 VPINPMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred EccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 8876 47789999999999999998887655444
No 54
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=62.35 E-value=71 Score=31.89 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAV 270 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 270 (555)
.++.+|++.. ...+|.+.+...+..++..+...+.. +++++...++-... -+..++.++..|+..+
T Consensus 19 ~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~----~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~v 84 (509)
T 3ivr_A 19 FPDRTAFMVD---------GVRLTHRDYLARAERLASGLLRDGVH----TGDRVAILSQNCSE-MIELIGAVALIGAILL 84 (509)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECCSCHH-HHHHHHHHHHTTCEEE
T ss_pred CCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCCHH-HHHHHHHHHHhCCEEE
Confidence 4677777641 24689999988887777665433222 78999988876543 3467788889999988
Q ss_pred EeC-CCCHHHHHHHHhhcCCceEecchHHHHH
Q 008749 271 FME-RFDFETMLKTVDKYKLTSMPVSPPLVVA 301 (555)
Q Consensus 271 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 301 (555)
.++ ....+.+...++..++..++..+.....
T Consensus 85 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 85 PVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp ECCTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred ecCCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 876 4788999999999999999987765544
No 55
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=60.98 E-value=15 Score=37.46 Aligned_cols=81 Identities=10% Similarity=-0.052 Sum_probs=61.4
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEI-PVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAF 147 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii 147 (555)
.+|.+.+...+......+.. .++.++|++...+|-...+ +...++++..|+..+.++ ...++.+...+++.++.++.
T Consensus 209 ~~th~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 209 ALPHRTACVRFSHARDPIFG-NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEE
T ss_pred hhhHHHHHHHHHHhhhhhcc-ccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEE
Confidence 68999887776655554444 5788999999888876433 345567788899988774 57888999999999999888
Q ss_pred EcCC
Q 008749 148 ATSR 151 (555)
Q Consensus 148 ~~~~ 151 (555)
..+.
T Consensus 287 ~~P~ 290 (550)
T 3rix_A 287 LVPT 290 (550)
T ss_dssp ECHH
T ss_pred eCcH
Confidence 7553
No 56
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=59.32 E-value=57 Score=32.96 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=71.2
Q ss_pred CCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeE
Q 008749 190 VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETA 269 (555)
Q Consensus 190 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~ 269 (555)
..++.+|++....| -.+|.+.+...+..++..+...+.. +++++...++-... .+..++.++..|+..
T Consensus 34 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~----~gd~V~i~~~~~~~-~~~~~la~~~~Gav~ 101 (536)
T 3ni2_A 34 NHSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQ----QGDVIMLFLPSSPE-FVLAFLGASHRGAII 101 (536)
T ss_dssp GSTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECCSSHH-HHHHHHHHHHHTCEE
T ss_pred cCCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCcHH-HHHHHHHHHHhCCEE
Confidence 34677777653222 4689999988877777665433322 78999988887543 346778888999988
Q ss_pred EEeC-CCCHHHHHHHHhhcCCceEecchHHH
Q 008749 270 VFME-RFDFETMLKTVDKYKLTSMPVSPPLV 299 (555)
Q Consensus 270 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~ 299 (555)
+.++ ....+.+...++..++..++......
T Consensus 102 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~ 132 (536)
T 3ni2_A 102 TAANPFSTPAELAKHAKASRAKLLITQACYY 132 (536)
T ss_dssp EECCTTCCHHHHHHHHHHHTEEEEEECGGGT
T ss_pred eccCCCCCHHHHHHHHHhcCCEEEEEChHHH
Confidence 8776 46789999999999999988876543
No 57
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=58.36 E-value=20 Score=36.04 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=59.7
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHH-HHHHHHHHhCCeEecCCCC--CCHHHHHHHhhhcCCeE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIP-VLYFSLLSLGVVVSPANPL--GSTSEISHQLHLSKPSI 145 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~-~~~lA~~~~G~~~v~v~~~--~~~~~l~~~l~~~~~~~ 145 (555)
.+|.+.+...+..++. .+++.++|++...+|-+..+- ..+++++..|+..+.++.. ..+..+...+++.++.+
T Consensus 162 ~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 162 QISAANLQSFTDWICA----DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEHHHHHHHHHHHHH----HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEcHHHHHHHHHHHHH----hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 6899888776654433 367889999999988775543 4578889999998877643 46778888999999998
Q ss_pred EEEcCC
Q 008749 146 AFATSR 151 (555)
Q Consensus 146 ii~~~~ 151 (555)
+...+.
T Consensus 238 ~~~~P~ 243 (511)
T 3e7w_A 238 WTSTPS 243 (511)
T ss_dssp EEECHH
T ss_pred EEecHH
Confidence 887543
No 58
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=56.12 E-value=1.8e+02 Score=29.56 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCC-CCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGA-NPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETA 269 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~ 269 (555)
.++.+|++.... .| ....+|.+.+...+..++..+... +.. +++++...++-... -+..++.++..|+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~----~gd~V~i~~~n~~e-~~~~~lA~~~~Ga~~ 126 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQ----RGDRVAVVLPRVPE-WWLVILGCIRAGLIF 126 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCC----TTCEEEEECCSCHH-HHHHHHHHHHHTCEE
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCC----CCCEEEEEcCCCHH-HHHHHHHHHHcCeEE
Confidence 457777765421 12 235789999988887777665432 222 78999888876543 246778888999988
Q ss_pred EEeCC-CCHHHHHHHHhhcCCceEecchHHHHHH
Q 008749 270 VFMER-FDFETMLKTVDKYKLTSMPVSPPLVVAL 302 (555)
Q Consensus 270 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 302 (555)
+.+++ ...+.+...++..++..+++.+.....+
T Consensus 127 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 127 MPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred EecCCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 87764 6789999999999999998877665544
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=55.31 E-value=21 Score=36.74 Aligned_cols=78 Identities=10% Similarity=0.206 Sum_probs=59.1
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHH--HHHHHHHhCCeEecCCCCC---CHHHHHHHhhhcCC
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPV--LYFSLLSLGVVVSPANPLG---STSEISHQLHLSKP 143 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~--~~lA~~~~G~~~v~v~~~~---~~~~l~~~l~~~~~ 143 (555)
.+|.+.+...+..... . +++.++|++...+|-...+-. .+++++..|+..+..++.. .+..+...+++.++
T Consensus 186 ~~th~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~ 261 (590)
T 3kxw_A 186 MVSHHNLLDNLNKIFT---S-FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKA 261 (590)
T ss_dssp EEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTC
T ss_pred EeeHHHHHHHHHHHHH---h-hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCC
Confidence 6999998877665543 3 688999999999888765543 3688889999988876532 56678888899998
Q ss_pred eEEEEcC
Q 008749 144 SIAFATS 150 (555)
Q Consensus 144 ~~ii~~~ 150 (555)
.++...+
T Consensus 262 t~~~~~p 268 (590)
T 3kxw_A 262 TISGSPN 268 (590)
T ss_dssp SEEEECT
T ss_pred eeecCCh
Confidence 8876543
No 60
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=54.68 E-value=19 Score=36.33 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=59.9
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCCC--CCHHHHHHHhhhcCCeE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEI-PVLYFSLLSLGVVVSPANPL--GSTSEISHQLHLSKPSI 145 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~v~~~--~~~~~l~~~l~~~~~~~ 145 (555)
.+|++.+...+.... . .+++.++|++...+|-+..+ +..+++++..|+..+.++.. ..++.+...+++.++.+
T Consensus 163 ~~th~~l~~~~~~~~---~-~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 163 QITYNCLVSFTKWAV---E-DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEHHHHHHHHHHHH---H-HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEehHHHHHHHHHHH---H-hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 589988876655433 2 36889999999998876543 34578888999998888653 56788888999999998
Q ss_pred EEEcCC
Q 008749 146 AFATSR 151 (555)
Q Consensus 146 ii~~~~ 151 (555)
+...+.
T Consensus 239 ~~~~P~ 244 (512)
T 3fce_A 239 WTSTPS 244 (512)
T ss_dssp EEECHH
T ss_pred EEecHH
Confidence 887543
No 61
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=54.46 E-value=1.1e+02 Score=30.31 Aligned_cols=100 Identities=11% Similarity=0.154 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAV 270 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 270 (555)
.++.+|++... . +..+|.+.+...+..++..+...+.. +++++...++-... -+..++.++..|+..+
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~Gv~----~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v 82 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHADGLR----PQQRVAVVAPNSAD-VVIAILALHRLGAVPA 82 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECCSCHH-HHHHHHHHHHHTCEEE
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCCHH-HHHHHHHHHHhCcEEE
Confidence 45667776432 1 24689999988777776655433222 78999888886643 2467788889999888
Q ss_pred EeC-CCCHHHHHHHHhhcCCceEec--chHHHHHH
Q 008749 271 FME-RFDFETMLKTVDKYKLTSMPV--SPPLVVAL 302 (555)
Q Consensus 271 ~~~-~~~~~~~~~~i~~~~~t~~~~--~P~~~~~l 302 (555)
.++ ....+++...++..++..++. .+.....+
T Consensus 83 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ecCCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 776 467899999999999998887 55444433
No 62
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=54.19 E-value=91 Score=30.69 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCC--CCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCe
Q 008749 191 NQSDAAVLLYSS--GTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSET 268 (555)
Q Consensus 191 ~~~~~a~i~~TS--GTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~ 268 (555)
.++.+|++.... +.+| ....+|.+.+...+..++..+...+ . +++++...++-..- -+..++.++..|+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g----~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v 108 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCG----S-TGDRVVISAPQGLE-YVVAFLGALQAGRI 108 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSS----C-TTCEEEEECCSSHH-HHHHHHHHHHTTCE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcC----C-CCCEEEEEcCCcHH-HHHHHHHHHHhCcE
Confidence 467778776542 2223 2367999999988888887765432 1 78898888776543 24677888999998
Q ss_pred EEEeCC----CCHHHHHHHHhhcCCceEecchHHHHHHHhC
Q 008749 269 AVFMER----FDFETMLKTVDKYKLTSMPVSPPLVVALTKS 305 (555)
Q Consensus 269 ~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 305 (555)
.+.++. ...+++...++..++..++........+...
T Consensus 109 ~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 109 AVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp EEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred EEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 887753 3567899999999999999888776665543
No 63
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=50.78 E-value=91 Score=27.07 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=51.2
Q ss_pred hhHHHHHHHHH-HHHHcCCeEEEeC-CCCHHHHHHHHhhcCCceEec--c----hHH--HHHHHhCcccCCCCCCCceEE
Q 008749 250 LFHVFGFLALV-RVVAVSETAVFME-RFDFETMLKTVDKYKLTSMPV--S----PPL--VVALTKSELTKKYDLSSLQYL 319 (555)
Q Consensus 250 ~~~~~g~~~~~-~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~--~----P~~--~~~l~~~~~~~~~~l~~lr~v 319 (555)
-.|..|...+- ..-..|..++... ...++.+.+.+.+++++++.. + +++ +..+.+...+.+.. ..+ .+
T Consensus 103 d~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~-~~v-~v 180 (215)
T 3ezx_A 103 DIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLR-DSV-KC 180 (215)
T ss_dssp CCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCG-GGS-EE
T ss_pred ChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCC-CCC-EE
Confidence 46777774444 4446666776664 578999999999999997666 2 222 33333333232210 123 37
Q ss_pred EEccCCCCHHHHHHH
Q 008749 320 SCGGAPLGKEVTDKF 334 (555)
Q Consensus 320 ~~~G~~l~~~~~~~~ 334 (555)
++||.+++++..+.+
T Consensus 181 ~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 181 MFGGAPVSDKWIEEI 195 (215)
T ss_dssp EEESSSCCHHHHHHH
T ss_pred EEECCCCCHHHHHHh
Confidence 889999998765543
No 64
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=50.53 E-value=89 Score=31.35 Aligned_cols=96 Identities=10% Similarity=-0.042 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAV 270 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 270 (555)
.++.+|++.. | ..+|.+.+...+..+...+...+.. +++++...++-... .+..++.++..|+..+
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~----~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVH----PEERILLVMLDTVA-LPVAFLGALYAGVVPV 101 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECCSSTH-HHHHHHHHHHHTCEEE
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCcHH-HHHHHHHHHHcCceEE
Confidence 4567776532 1 3589999988877777655433222 78999888876543 2456778888999888
Q ss_pred EeC-CCCHHHHHHHHhhcCCceEecchHHHH
Q 008749 271 FME-RFDFETMLKTVDKYKLTSMPVSPPLVV 300 (555)
Q Consensus 271 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~ 300 (555)
.++ ....+++...++..++..++..+....
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 132 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQ 132 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHH
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhh
Confidence 776 467899999999999999888765543
No 65
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=49.08 E-value=58 Score=33.61 Aligned_cols=78 Identities=8% Similarity=-0.001 Sum_probs=58.5
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPV---LYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSI 145 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~---~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ 145 (555)
.+|.+.+...+..... . .++.++|++...+|-+..+-. .+++++..|+..+..+ ......+...++..++.+
T Consensus 203 ~~th~~~~~~~~~~~~---~-~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 203 PRTHNDYYYSVRRSVE---I-CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVNV 277 (617)
T ss_dssp EEEHHHHHHHHHHHHH---H-HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred ehhHHHHHHHHHHHHH---h-cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCcE
Confidence 6899988776655443 2 577899999999886554433 3788888999888765 457788888999999998
Q ss_pred EEEcCC
Q 008749 146 AFATSR 151 (555)
Q Consensus 146 ii~~~~ 151 (555)
+...+.
T Consensus 278 ~~~~P~ 283 (617)
T 3rg2_A 278 TALVPP 283 (617)
T ss_dssp EEECHH
T ss_pred EEcchH
Confidence 887543
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=48.42 E-value=1.5e+02 Score=30.83 Aligned_cols=98 Identities=10% Similarity=0.231 Sum_probs=71.5
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhc-CCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEY-GANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETA 269 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~ 269 (555)
.++.+|++.... .+| ....+|.+.+...+..++..+. ..+.. ++|++...+|...- ....++.++..|+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~----~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~ 166 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVR----KGDTVAVYMPMVPE-AIITLLAISRIGAIH 166 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCC----TTCEEEECCCSSHH-HHHHHHHHHHTTCEE
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCC----CCCEEEEEcCCCHH-HHHHHHHHHHcCCEE
Confidence 456777765422 122 2346899999888888777665 43322 89999999987643 346778889999988
Q ss_pred EEeC-CCCHHHHHHHHhhcCCceEecch
Q 008749 270 VFME-RFDFETMLKTVDKYKLTSMPVSP 296 (555)
Q Consensus 270 v~~~-~~~~~~~~~~i~~~~~t~~~~~P 296 (555)
+.+. .+..+.+...++..++.++++..
T Consensus 167 vpl~~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 167 SVVFAGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred EeeCCCCCHHHHHHHHHhcCCeEEEEcc
Confidence 8775 57899999999999999888754
No 67
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=47.09 E-value=43 Score=34.69 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=59.3
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHH-HHHHHHHHhCCeEecCC-CCCCHHHHHHHhhhcCCeEE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIP-VLYFSLLSLGVVVSPAN-PLGSTSEISHQLHLSKPSIA 146 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~-~~~lA~~~~G~~~v~v~-~~~~~~~l~~~l~~~~~~~i 146 (555)
.+|.+.+...+. .... .++.++|++...++-+.+.- ..+++.+..|+..+..+ ....++.+...+++.++.++
T Consensus 183 ~~th~~l~~~~~----~~~~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 257 (620)
T 4dg8_A 183 ACTHAGITRLCL----GQSF-LAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSA 257 (620)
T ss_dssp EEEHHHHHHHHS----SCGG-GTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEE
T ss_pred EEchHHHHHHHH----HHHh-hCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEE
Confidence 689888754332 2233 68899999999988876654 34678888898887764 35688899999999999998
Q ss_pred EEcCCc
Q 008749 147 FATSRT 152 (555)
Q Consensus 147 i~~~~~ 152 (555)
...+..
T Consensus 258 ~~~Ps~ 263 (620)
T 4dg8_A 258 WLTASL 263 (620)
T ss_dssp EEEHHH
T ss_pred EccHHH
Confidence 877643
No 68
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=46.31 E-value=1.5e+02 Score=30.06 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAV 270 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 270 (555)
.++.+|++.. .-.+|.+.+...+..++..+...+.. +++++...++-... .+..++.++..|+..+
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~----~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIG----KDTLVGIMMEKSID-LFIGILAVLKAGGAYV 117 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECCSSHH-HHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEeCCCHH-HHHHHHHHHHhCCEEE
Confidence 4567776631 13689999987777766655432222 78999888876542 2467788889999888
Q ss_pred EeC-CCCHHHHHHHHhhcCCceEecchHHHHH
Q 008749 271 FME-RFDFETMLKTVDKYKLTSMPVSPPLVVA 301 (555)
Q Consensus 271 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 301 (555)
.++ ....+.+...++..++..++..+.....
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 876 4678999999999999999888765443
No 69
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=46.31 E-value=1.1e+02 Score=31.14 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAV 270 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 270 (555)
.++.+|++..... | ....+|.+.+...+..++..+...+.. ++|++...++-..- -+..++.++..|+..+
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~----~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~v 139 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIG----KGDYVMLTLKSRYD-FWYCMLGLHKLGAIAV 139 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECTTCTH-HHHHHHHHHHHTCEEE
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCCHH-HHHHHHHHHhCCEEEE
Confidence 5688887765321 2 245789999988777777665433322 88999988886543 2467778889999888
Q ss_pred EeC-CCCHHHHHHHHhhcCCceEecch
Q 008749 271 FME-RFDFETMLKTVDKYKLTSMPVSP 296 (555)
Q Consensus 271 ~~~-~~~~~~~~~~i~~~~~t~~~~~P 296 (555)
.++ ....+.+...++..++..+++..
T Consensus 140 pl~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 140 PATHMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp ECCTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred eCCccCCHHHHHHHHHhcCCCEEEEec
Confidence 775 47889999999999999888754
No 70
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=45.18 E-value=47 Score=31.28 Aligned_cols=90 Identities=13% Similarity=-0.031 Sum_probs=56.6
Q ss_pred CcEEEECCCCceecHHHHHHHHHHHHHHHHhhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHH
Q 008749 58 APFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYS-LSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISH 136 (555)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~ 136 (555)
++.+....-..+-|++.--. ...+.. +.+ .| +++|+.|.+....+-.-..+.++|.+.|..++.+-|...+.....
T Consensus 36 ~i~~K~E~~~ptGSfK~R~a-~~~i~~-a~~-~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 112 (334)
T 3tbh_A 36 KVVLKMECENPMASVKDRLG-FAIYDK-AEK-EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRC 112 (334)
T ss_dssp EEEEEEGGGSTTSBTHHHHH-HHHHHH-HHH-TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred EEEEEeCCCCCccCcHHHHH-HHHHHH-HHH-cCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 45665543233445554321 122333 333 35 488888655555566677778888888988777666655556677
Q ss_pred HhhhcCCeEEEEcC
Q 008749 137 QLHLSKPSIAFATS 150 (555)
Q Consensus 137 ~l~~~~~~~ii~~~ 150 (555)
.++..++.++++..
T Consensus 113 ~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 113 LLRIFGAEVILTPA 126 (334)
T ss_dssp HHHHTTCEEEEECG
T ss_pred HHHHCCCEEEEECC
Confidence 78899999998754
No 71
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=45.02 E-value=60 Score=22.91 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=34.2
Q ss_pred hHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 008749 460 PAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPY 518 (555)
Q Consensus 460 ~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 518 (555)
..++++.|.+.|+|.+|..+.- .....+.+.. .+.+++.+.+.+++...
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG-----~~D~ll~v~~-----~d~~~l~~~i~~~l~~~ 63 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYG-----EYDLIVKVET-----DTLKDLDQFITEKIRKM 63 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBS-----SCSEEEEEEE-----SSHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHhCCCCeeEEEEEcc-----cCCEEEEEEE-----CCHHHHHHHHHHHhccC
Confidence 4789999999999999988732 2223444443 47788888887666544
No 72
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=44.48 E-value=85 Score=31.33 Aligned_cols=77 Identities=14% Similarity=0.068 Sum_probs=55.3
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcH--HHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEI--PVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIA 146 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~--~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~i 146 (555)
.+|.+.+...+..+... +++.++|++...+|-.... +..+++.+..|+.++..+ ....+.+...+ ..++.++
T Consensus 174 ~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~ 247 (505)
T 3nyq_A 174 VIPRRALATTLDALADA----WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATML 247 (505)
T ss_dssp EEEHHHHHHHHHHHHHH----HTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEE
T ss_pred EEeHHHHHHHHHHHHHH----hCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEE
Confidence 69999988877665543 5778999988877754332 334788889999988774 56777777777 6677777
Q ss_pred EEcCC
Q 008749 147 FATSR 151 (555)
Q Consensus 147 i~~~~ 151 (555)
+..+.
T Consensus 248 ~~~P~ 252 (505)
T 3nyq_A 248 FGVPT 252 (505)
T ss_dssp EECHH
T ss_pred EehHH
Confidence 76543
No 73
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=42.07 E-value=1.7e+02 Score=29.65 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAV 270 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 270 (555)
.++.+|++.. .-.+|.+.+...+..++..+...+.. +++++...++-... -+..++.++..|+..+
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~----~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v 153 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVA----PGTLVGVHLERGFD-MVVALLAVLKAGGGYT 153 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECCSSHH-HHHHHHHHHHTTCEEE
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEeCCCHH-HHHHHHHHHHHCCEEE
Confidence 4677777641 13589999988877777665433222 78999988876643 2467788899999888
Q ss_pred EeC-CCCHHHHHHHHhhcCCceEecchHH
Q 008749 271 FME-RFDFETMLKTVDKYKLTSMPVSPPL 298 (555)
Q Consensus 271 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~ 298 (555)
.++ ....+.+...++..++..++.....
T Consensus 154 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 154 MLDPQFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred EcCCCChHHHHHHHHHhcCCCEEEecchh
Confidence 876 4678999999999999988876543
No 74
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=38.44 E-value=1.5e+02 Score=32.48 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=71.4
Q ss_pred CCCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeE
Q 008749 190 VNQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETA 269 (555)
Q Consensus 190 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~ 269 (555)
..++.+|++...+| ..+|.+.+...+..+...+...+.. +++++...++-.. --+..++.++..|+..
T Consensus 73 ~~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~Gv~----~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~ 140 (979)
T 3tsy_A 73 EFATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKLGVN----QNDVVMLLLPNCP-EFVLSFLAASFRGATA 140 (979)
T ss_dssp GTTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECSSCH-HHHHHHHHHHHHTCEE
T ss_pred hCCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHcCCC----CcCEEEEEeCCCH-HHHHHHHHHHHcCCEE
Confidence 35678887653222 4689999988777777665433322 7899998888663 2346778889999998
Q ss_pred EEeC-CCCHHHHHHHHhhcCCceEecchHH
Q 008749 270 VFME-RFDFETMLKTVDKYKLTSMPVSPPL 298 (555)
Q Consensus 270 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~ 298 (555)
+.++ ...++.+...++..++.+++..+..
T Consensus 141 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 141 TAANPFFTPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp EEECTTSCHHHHHHHHHHHTEEEEEECSTT
T ss_pred EeeCCCCCHHHHHHHHHHcCCeEEEEChHH
Confidence 8776 5788999999999999998877654
No 75
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=38.28 E-value=1.8e+02 Score=30.18 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCCCCCccceeeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEE
Q 008749 191 NQSDAAVLLYSSGTTGKVKGVLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAV 270 (555)
Q Consensus 191 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 270 (555)
.++.+|++... ..+| ....+|.+.+...+..++..+...+.. ++|++...+|...- ....++.++..|+..+
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~----~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~v 160 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIK----KGDVVAIYMPMVPE-AAVAMLACARIGAVHS 160 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCC----TTCEEEEECCSSHH-HHHHHHHHHHHTCEEE
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEeCCCHH-HHHHHHHHHHcCcEEE
Confidence 35677776432 2222 235689999987777766655432222 88999999887643 2467788889999888
Q ss_pred EeC-CCCHHHHHHHHhhcCCceEecch
Q 008749 271 FME-RFDFETMLKTVDKYKLTSMPVSP 296 (555)
Q Consensus 271 ~~~-~~~~~~~~~~i~~~~~t~~~~~P 296 (555)
.+. .+..+.+...++..++.++++..
T Consensus 161 pl~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 161 VIFGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 775 57889999999999999887643
No 76
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=37.78 E-value=34 Score=28.06 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=37.3
Q ss_pred eecCCCCCCCCCCCCC-CCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHH----HHHHHHHHh
Q 008749 23 FHSVRPKIPLPPSSQP-LSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQT----NSLTLSLQK 88 (555)
Q Consensus 23 ~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v----~~la~~L~~ 88 (555)
|.+....+++|-.... ..+.+.+.+...+=|- +++.||+|+.+.+ +.++..+.+
T Consensus 53 f~G~~~~f~lpl~~~g~t~fq~~V~~~l~~IP~------------G~~~tYg~iA~~~g~p~RaVG~A~~~ 111 (156)
T 1wrj_A 53 FEGKKVDLTEPVDFKPFNEFRIRVFKEVMRIKW------------GEVRTYKQVADAVKTSPRAVGTALSK 111 (156)
T ss_dssp TTTCCCCCCCCBCCTTSCHHHHHHHHHHTTSCT------------TCCEEHHHHHHHTTSCHHHHHHHHHT
T ss_pred HcCCCCCCCeeecCCCCCHHHHHHHHHHhCCCC------------CceEcHHHHHHHhCCCccHHHHHHHh
Confidence 4455556666654444 4556666666666666 8999999999987 677777776
No 77
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=37.60 E-value=72 Score=30.09 Aligned_cols=91 Identities=9% Similarity=-0.034 Sum_probs=61.1
Q ss_pred CcEEEECCCCceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 008749 58 APFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQ 137 (555)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~ 137 (555)
++.+....-..+-||++=- ....+.....+ --+++|.+..+....+-.-..+.++|.+.|..++.+-|...+......
T Consensus 51 ~IylK~E~lnptGSfK~Rg-A~~~i~~a~~~-g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~ 128 (344)
T 3vc3_A 51 YVAVKQEMMQPTASIADRP-AYAMITDAEEK-NLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVT 128 (344)
T ss_dssp EEEEEEGGGSTTSBTTHHH-HHHHHHHHHHT-TCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEecCCCCCCCcHHHH-HHHHHHHHHHc-CCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHH
Confidence 5666665334455555321 22334444443 336788765566666777788888999999888887777777777788
Q ss_pred hhhcCCeEEEEcC
Q 008749 138 LHLSKPSIAFATS 150 (555)
Q Consensus 138 l~~~~~~~ii~~~ 150 (555)
++..++.+++++.
T Consensus 129 ~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 129 MRAFGAELILTDP 141 (344)
T ss_dssp HHHTTCEEEEECG
T ss_pred HHHcCCEEEEECC
Confidence 9999999998753
No 78
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=37.32 E-value=1.3e+02 Score=29.89 Aligned_cols=82 Identities=5% Similarity=0.033 Sum_probs=62.5
Q ss_pred eeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeC-CCCHHHHHHHHhhcCC
Q 008749 211 VLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFME-RFDFETMLKTVDKYKL 289 (555)
Q Consensus 211 v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~ 289 (555)
-.+|.+.+...+..++..+...+.. +++++...++-... .+..++.++..|+..+.++ ....+++...++..++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~----~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~ 101 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQ----VGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEP 101 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCC----TTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCC
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCC
Confidence 3589999988877777665433222 78999988876632 3467788899999888876 4678999999999999
Q ss_pred ceEecchH
Q 008749 290 TSMPVSPP 297 (555)
Q Consensus 290 t~~~~~P~ 297 (555)
..+++.+.
T Consensus 102 ~~vi~~~~ 109 (503)
T 4fuq_A 102 KIVVCDPS 109 (503)
T ss_dssp SEEEECGG
T ss_pred cEEEECch
Confidence 99988764
No 79
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=35.24 E-value=98 Score=21.54 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 008749 460 PAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPY 518 (555)
Q Consensus 460 ~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 518 (555)
..++++.|.+.|+|.+|..+.- +..+++.+.. .+.+++.+.+.+++...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG-----~~d~l~~v~~-----~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYG-----VYDIVVKVEA-----DSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSS-----SCSEEEEEEC-----SSHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHhCCCCeEEEEEEec-----cCCEEEEEEE-----CCHHHHHHHHHHHhcCC
Confidence 4789999999999999988632 2223444443 47778888887666543
No 80
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=32.24 E-value=1.1e+02 Score=21.42 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=31.1
Q ss_pred CceecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEc
Q 008749 67 GRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILS 102 (555)
Q Consensus 67 ~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~ 102 (555)
.+.+|..|+..-+.+--+.|+++.|..+.-.++-++
T Consensus 61 drkmtraefsaiasrsirelkerfgfdkdvpigavl 96 (115)
T 4hlb_A 61 DRKMTRAEFSAIASRSIRELKERFGFDKDVPIGAVL 96 (115)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCcCCccceeE
Confidence 789999999999999999999999998876665543
No 81
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=32.19 E-value=72 Score=32.38 Aligned_cols=82 Identities=10% Similarity=0.137 Sum_probs=59.9
Q ss_pred eecHHHHHHHHHHHHHHHHh----hcCCCCCCEEEEEcCCCCcHHH-HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCC
Q 008749 69 RLTYPEFLRQTNSLTLSLQK----HYSLSKNDVAFILSPSSFEIPV-LYFSLLSLGVVVSPANPLGSTSEISHQLHLSKP 143 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~----~~g~~~gd~V~l~~~~~~~~~~-~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~ 143 (555)
.+|++.+...+..++..+.. ...+..++++....+...+..+ .++..+..|+..+........+.+...+++.++
T Consensus 194 ~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~ 273 (562)
T 3ite_A 194 RVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGV 273 (562)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTC
T ss_pred EECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCC
Confidence 58999999888887776642 1457788888888877765443 467788889888776544444667788888998
Q ss_pred eEEEEcC
Q 008749 144 SIAFATS 150 (555)
Q Consensus 144 ~~ii~~~ 150 (555)
.++...+
T Consensus 274 t~~~~~P 280 (562)
T 3ite_A 274 THAGIVP 280 (562)
T ss_dssp CEEEECH
T ss_pred CEEEcCH
Confidence 8888654
No 82
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=28.37 E-value=1.7e+02 Score=29.07 Aligned_cols=81 Identities=9% Similarity=-0.095 Sum_probs=59.4
Q ss_pred eeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeC-CCCHHHHHHHHhhcCC
Q 008749 211 VLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFME-RFDFETMLKTVDKYKL 289 (555)
Q Consensus 211 v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~ 289 (555)
-.+|.+.+...+..++..+...+.. +++++...++-.. --+..++.++..|+..+.++ ....+.+...++..++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~----~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 102 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALL----AKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKP 102 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCC----TTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCC
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCC
Confidence 3579999988877777665433222 7788887777653 22467778888999888765 5788999999999999
Q ss_pred ceEecch
Q 008749 290 TSMPVSP 296 (555)
Q Consensus 290 t~~~~~P 296 (555)
..+++..
T Consensus 103 ~~ii~~~ 109 (521)
T 3l8c_A 103 SLIIAIE 109 (521)
T ss_dssp SEEEESS
T ss_pred CEEEecC
Confidence 9887653
No 83
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.26 E-value=1.4e+02 Score=27.89 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=36.3
Q ss_pred CCCCCCEEEEEcCCCCc----HHHHHHH---HHHhCCeEecCCCCC------------CHHHHHHHhhhcCCeEEEEcC
Q 008749 91 SLSKNDVAFILSPSSFE----IPVLYFS---LLSLGVVVSPANPLG------------STSEISHQLHLSKPSIAFATS 150 (555)
Q Consensus 91 g~~~gd~V~l~~~~~~~----~~~~~lA---~~~~G~~~v~v~~~~------------~~~~l~~~l~~~~~~~ii~~~ 150 (555)
-+++||+|+|+.|.+.- --..-.| +-..|..++.-.... ..+++...+.+-..++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 57899999999998631 1112222 234477766543221 224566667777788888754
No 84
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=27.84 E-value=1.2e+02 Score=21.77 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=33.3
Q ss_pred hHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 008749 460 PAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSINEAQLMDFIAKQVAPY 518 (555)
Q Consensus 460 ~~~Ie~~l~~~~~i~~~~v~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 518 (555)
..++++.|.++|+|.+|..+.- ....++.+.. .+.+++.+.+.+++...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG-----~~D~ll~v~~-----~d~~~l~~~l~~~l~~~ 63 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTG-----PYDLVALVRL-----KDVEELDDVVTQGILSL 63 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESS-----SSSEEEEEEE-----SSGGGHHHHCCCCCTTS
T ss_pred HHHHHHHHhcCCCeEEEEEeec-----CCCEEEEEEE-----CCHHHHHHHHHHhcccC
Confidence 5788999999999999998732 2223444443 35667777776666544
No 85
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=27.21 E-value=1.1e+02 Score=29.01 Aligned_cols=62 Identities=11% Similarity=-0.036 Sum_probs=40.1
Q ss_pred HHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCC-----CCHHHHHHHhhhcC--CeEEEEc
Q 008749 84 LSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPL-----GSTSEISHQLHLSK--PSIAFAT 149 (555)
Q Consensus 84 ~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~-----~~~~~l~~~l~~~~--~~~ii~~ 149 (555)
..|.. +++++||.|++-.+.... ...++...|+.++.++.+ ...+.+...+...+ .++|+..
T Consensus 68 ~al~~-l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 68 AAIQL-KKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHH-HSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHH-cCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34555 578999999876654433 345667889887665532 46788888774334 6666643
No 86
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=25.65 E-value=1.2e+02 Score=28.38 Aligned_cols=61 Identities=25% Similarity=0.121 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCCCc------HHHHHHHHH-HhCCeEecCCCCC------------CHHHHHHHhhhcCCeEEEEcCC
Q 008749 91 SLSKNDVAFILSPSSFE------IPVLYFSLL-SLGVVVSPANPLG------------STSEISHQLHLSKPSIAFATSR 151 (555)
Q Consensus 91 g~~~gd~V~l~~~~~~~------~~~~~lA~~-~~G~~~v~v~~~~------------~~~~l~~~l~~~~~~~ii~~~~ 151 (555)
-+++||+|+|+.|.+.- -+-.....+ ..|..++.-.... ..+++...+.+-.+++|+|...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 57899999999998852 121222223 3587766532111 2245666666677788887643
No 87
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=25.64 E-value=1.5e+02 Score=27.70 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=36.9
Q ss_pred CCCCCCEEEEEcCCCCcH----HHH--HHHHH-HhCCeEecCCCCC------------CHHHHHHHhhhcCCeEEEEcCC
Q 008749 91 SLSKNDVAFILSPSSFEI----PVL--YFSLL-SLGVVVSPANPLG------------STSEISHQLHLSKPSIAFATSR 151 (555)
Q Consensus 91 g~~~gd~V~l~~~~~~~~----~~~--~lA~~-~~G~~~v~v~~~~------------~~~~l~~~l~~~~~~~ii~~~~ 151 (555)
-+++||+|+|+.|.+.-. -.. ....+ ..|..++.-+... ..+++...+.+-.+++|++...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 478999999999988522 122 22222 3587776543211 2245666666677788887653
No 88
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=25.41 E-value=3.1e+02 Score=27.50 Aligned_cols=87 Identities=7% Similarity=-0.071 Sum_probs=63.9
Q ss_pred eeechHHHHHHHHHHhhhhcCCCCCCCCCCCCEEEEecChhHHHHHHHHHHHHHcCCeEEEeCC-CC-------HHHHHH
Q 008749 211 VLLTHRNIISLVASFHHVEYGANPAEPQPSGEVSLITLPLFHVFGFLALVRVVAVSETAVFMER-FD-------FETMLK 282 (555)
Q Consensus 211 v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~-~~-------~~~~~~ 282 (555)
-.+|.+.+...+..++..+...+.. +++++...++-..- -+..++.++..|+..+.++. .. .+.+..
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~----~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~ 122 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLK----KGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQG 122 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCC----TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHH
Confidence 5789999988887777665433222 78999988886543 34677888999998887753 33 578888
Q ss_pred HHhhcCCceEecchHHHHHH
Q 008749 283 TVDKYKLTSMPVSPPLVVAL 302 (555)
Q Consensus 283 ~i~~~~~t~~~~~P~~~~~l 302 (555)
.++..++..++........+
T Consensus 123 ~l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 123 LLASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHHHCCSEEEECGGGHHHH
T ss_pred HHHhcCCCEEEecHHHHHHH
Confidence 99999999988877654433
No 89
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.07 E-value=1.5e+02 Score=28.31 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=37.6
Q ss_pred cCCCCCCEEEEEcCCCCcH------HHHHHHHH-HhCCeEecCCCCC------------CHHHHHHHhhhcCCeEEEEcC
Q 008749 90 YSLSKNDVAFILSPSSFEI------PVLYFSLL-SLGVVVSPANPLG------------STSEISHQLHLSKPSIAFATS 150 (555)
Q Consensus 90 ~g~~~gd~V~l~~~~~~~~------~~~~lA~~-~~G~~~v~v~~~~------------~~~~l~~~l~~~~~~~ii~~~ 150 (555)
--+++||+|+|+.|.+.-. +-.....+ ..|..++.-+... ..+++...+.+-.+++|+|..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 3689999999999988521 21222222 3587776543221 224555666667778888765
Q ss_pred C
Q 008749 151 R 151 (555)
Q Consensus 151 ~ 151 (555)
.
T Consensus 118 G 118 (371)
T 3tla_A 118 G 118 (371)
T ss_dssp C
T ss_pred c
Confidence 3
No 90
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=24.50 E-value=1.9e+02 Score=26.60 Aligned_cols=89 Identities=8% Similarity=-0.047 Sum_probs=51.9
Q ss_pred CcEEEECCCCceecHHHHHHHHHHHHHHHHhhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHH
Q 008749 58 APFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYS-LSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISH 136 (555)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~ 136 (555)
++.+....-..+-++++--.. ..+ ..+.+ .| +++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+.....
T Consensus 32 ~i~~K~E~~~ptgSfK~R~a~-~~l-~~a~~-~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 107 (313)
T 2q3b_A 32 DIVAKLEFFNPANSVKDRIGV-AML-QAAEQ-AGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRM 107 (313)
T ss_dssp EEEEEEGGGSTTSBTHHHHHH-HHH-HHHHH-TTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred EEEEEehhcCCCCcHHHHHHH-HHH-HHHHH-cCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 455544422334455543322 222 23333 35 367776655 44455555666777789988777665554455566
Q ss_pred HhhhcCCeEEEEcC
Q 008749 137 QLHLSKPSIAFATS 150 (555)
Q Consensus 137 ~l~~~~~~~ii~~~ 150 (555)
.++..++.++++..
T Consensus 108 ~~~~~Ga~v~~~~~ 121 (313)
T 2q3b_A 108 LLRAYGAELILTPG 121 (313)
T ss_dssp HHHHTTCEEEEECG
T ss_pred HHHHCCCEEEEeCC
Confidence 78889999988764
No 91
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=23.51 E-value=2e+02 Score=26.76 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=48.5
Q ss_pred eecHHHHHHHHHH--HH-HHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeE
Q 008749 69 RLTYPEFLRQTNS--LT-LSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSI 145 (555)
Q Consensus 69 ~~Ty~el~~~v~~--la-~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ 145 (555)
.+++.+....... .| +.|.. .++++|++|++....+.-..++.+|....|+.++-++. +.++ ..+++..++..
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~ 211 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKV-SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADV 211 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCHHHHhhcccceeeEEeeecc-cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeE
Confidence 4666664433222 22 33444 79999999999987666666666666666777665543 3333 45666778777
Q ss_pred EEEc
Q 008749 146 AFAT 149 (555)
Q Consensus 146 ii~~ 149 (555)
++-.
T Consensus 212 ~i~~ 215 (348)
T 4eez_A 212 TINS 215 (348)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7643
No 92
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=23.40 E-value=1.1e+02 Score=35.11 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=59.7
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCCcHHH-HHHHHHHhCCeEecCCC--CCCHHHHHHHhhhcCCeE
Q 008749 69 RLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPV-LYFSLLSLGVVVSPANP--LGSTSEISHQLHLSKPSI 145 (555)
Q Consensus 69 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~l~~~~~~~~~~-~~lA~~~~G~~~v~v~~--~~~~~~l~~~l~~~~~~~ 145 (555)
.+|.+.+... ...... .++.++|++..+.+-+.+..+ -+++.+..|+..+..++ ..+++.+...++..++.+
T Consensus 626 ~~~h~~l~~~----~~~~~~-~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~ 700 (1304)
T 2vsq_A 626 ITTHANIQGL----VKHVDY-MAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNV 700 (1304)
T ss_dssp EEEHHHHHHH----HSSCCS-SCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCE
T ss_pred EEehHHHHHH----HHHHHh-cCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcE
Confidence 5898887642 222233 688999999998888776544 46788888998887765 357889999999999999
Q ss_pred EEEcCCcc
Q 008749 146 AFATSRTS 153 (555)
Q Consensus 146 ii~~~~~~ 153 (555)
+...+...
T Consensus 701 ~~~~p~~~ 708 (1304)
T 2vsq_A 701 MFATTALF 708 (1304)
T ss_dssp EEEEHHHH
T ss_pred EEccHHHH
Confidence 88776443
No 93
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Probab=23.01 E-value=45 Score=28.10 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=35.6
Q ss_pred eecCCCCCCCCCCCCCCCHHHHhhcccccCCCCCCCcEEEECCCCceecHHHHHHHH------HHHHHHHHh
Q 008749 23 FHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQT------NSLTLSLQK 88 (555)
Q Consensus 23 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Ty~el~~~v------~~la~~L~~ 88 (555)
|.+....+++|-......+.+.+.+...+=|- +++.||+|+.+.+ +.++..+.+
T Consensus 79 f~G~~~~f~lpl~~~gt~Fq~~V~~~l~~IP~------------G~~~tYg~iA~~~g~p~a~RaVg~A~~~ 138 (180)
T 1sfe_A 79 LNQRDTPLTLPLDIRGTAFQQQVWQALRTIPC------------GETVSYQQLANAIGKPKAVRAVASACAA 138 (180)
T ss_dssp HHSSSCCCCSCBCCCSCHHHHHHHHHHTTSCT------------TCCEEHHHHHHHTTCTTCHHHHHHHHHT
T ss_pred hcCCCCCCCCCcccCcChHHHHHHHHHhcCCC------------CCeEeHHHHHHHhCCCchHHHHHHHHHh
Confidence 34455566666544445556666666666665 8999999999874 566666665
No 94
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=23.01 E-value=1.8e+02 Score=27.36 Aligned_cols=79 Identities=11% Similarity=0.065 Sum_probs=48.5
Q ss_pred eecHHHHHHHH--HHHH-HHHHhhcCCCCCCEEEEEcC-CCCcHHHHHHHHHHhCCeE-ecCCCCCCHHHHHHHhhhcCC
Q 008749 69 RLTYPEFLRQT--NSLT-LSLQKHYSLSKNDVAFILSP-SSFEIPVLYFSLLSLGVVV-SPANPLGSTSEISHQLHLSKP 143 (555)
Q Consensus 69 ~~Ty~el~~~v--~~la-~~L~~~~g~~~gd~V~l~~~-~~~~~~~~~lA~~~~G~~~-v~v~~~~~~~~l~~~l~~~~~ 143 (555)
.+++.+..... -..| +.|.+..++++|++|++... .++-.+++.+|-. .|+.. +.++..-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46676644321 1122 24444358999999999987 4567777666654 68854 444444444455566778888
Q ss_pred eEEEE
Q 008749 144 SIAFA 148 (555)
Q Consensus 144 ~~ii~ 148 (555)
+.++.
T Consensus 218 ~~vi~ 222 (357)
T 1zsy_A 218 EHVIT 222 (357)
T ss_dssp SEEEE
T ss_pred cEEEe
Confidence 87774
No 95
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=22.73 E-value=83 Score=20.10 Aligned_cols=21 Identities=10% Similarity=0.308 Sum_probs=16.1
Q ss_pred HHHhhcCCCCCCEEEEEcCCC
Q 008749 85 SLQKHYSLSKNDVAFILSPSS 105 (555)
Q Consensus 85 ~L~~~~g~~~gd~V~l~~~~~ 105 (555)
.+++++|+++||.|.+...+.
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECSS
T ss_pred HHHHHcCcCCCCEEEEEEECC
Confidence 345569999999999876554
No 96
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=22.57 E-value=2.3e+02 Score=25.95 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=47.1
Q ss_pred eecHHHHHHHHHH--HH-HHHHhhcCCCCCCEEEEEc-CCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCe
Q 008749 69 RLTYPEFLRQTNS--LT-LSLQKHYSLSKNDVAFILS-PSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPS 144 (555)
Q Consensus 69 ~~Ty~el~~~v~~--la-~~L~~~~g~~~gd~V~l~~-~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~ 144 (555)
.+++.+....... .| +.|. +.++++|++|++.. .-++-..++.+|- ..|+.++.+. +.++ ...++..++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALN-QAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHH-HTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCHHHHhhhhhHHHHHHHHHH-hcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 4677665443222 22 3444 47999999999986 4556666666665 5698766553 4445 5566778887
Q ss_pred EEEE
Q 008749 145 IAFA 148 (555)
Q Consensus 145 ~ii~ 148 (555)
.++.
T Consensus 199 ~~i~ 202 (321)
T 3tqh_A 199 QCIN 202 (321)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 97
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=22.40 E-value=1.9e+02 Score=28.28 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=44.2
Q ss_pred cC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcC
Q 008749 90 YS-LSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISHQLHLSKPSIAFATS 150 (555)
Q Consensus 90 ~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (555)
.| +++|....+-...+-.-..+.++|.+.|..++.+-|...+......++..++.+++++.
T Consensus 168 ~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 168 KGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred cCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45 46775444445556667777788889998887776666666667788899999998853
No 98
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=21.02 E-value=2.3e+02 Score=26.54 Aligned_cols=89 Identities=10% Similarity=-0.081 Sum_probs=52.6
Q ss_pred CcEEEECCCCceecHHHHHHHHHHHHHHHHhhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHH
Q 008749 58 APFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYS-LSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISH 136 (555)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~ 136 (555)
++.+....-+.+-+|++.-.. ..+.. +.+ .| +++|+.|..... +-.-..+.++|.+.|..++.+-|...+.....
T Consensus 43 ~v~~K~E~~~ptGSfKdR~a~-~~l~~-a~~-~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 118 (343)
T 2pqm_A 43 RILVKLEYFNPMSSVKDRVGF-NIVYQ-AIK-DGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQM 118 (343)
T ss_dssp EEEEEEGGGSTTSBTHHHHHH-HHHHH-HHH-HTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred EEEEEeccCCCCCChHHHHHH-HHHHH-HHH-cCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 455545433344555544221 22333 333 35 467776665543 44455566677789987777655555555666
Q ss_pred HhhhcCCeEEEEcC
Q 008749 137 QLHLSKPSIAFATS 150 (555)
Q Consensus 137 ~l~~~~~~~ii~~~ 150 (555)
.++..++.++++..
T Consensus 119 ~~~~~GA~V~~~~~ 132 (343)
T 2pqm_A 119 IMKAFGAELILTEG 132 (343)
T ss_dssp HHHHTTCEEEEECG
T ss_pred HHHHCCCEEEEECC
Confidence 78889999998764
No 99
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=20.88 E-value=2.1e+02 Score=26.25 Aligned_cols=89 Identities=11% Similarity=-0.005 Sum_probs=51.6
Q ss_pred CcEEEECCCCceecHHHHHHHHHHHHHHHHhhcC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHH
Q 008749 58 APFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYS-LSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSTSEISH 136 (555)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~~~~~~l~~ 136 (555)
++.+....-..+-++++--.. ..+.. +.+ .| +++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+.....
T Consensus 30 ~i~~K~E~~~ptgSfK~R~a~-~~l~~-a~~-~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 105 (308)
T 2egu_A 30 DVYLKLEFMNPGSSVKDRIAL-AMIEA-AEK-AGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRN 105 (308)
T ss_dssp EEEEEEGGGSTTSBTHHHHHH-HHHHH-HHH-TTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHH
T ss_pred EEEEEecccCCCCChHHHHHH-HHHHH-HHH-cCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 455544422334455543222 22333 333 35 367776655 44445555666777789988777655544455566
Q ss_pred HhhhcCCeEEEEcC
Q 008749 137 QLHLSKPSIAFATS 150 (555)
Q Consensus 137 ~l~~~~~~~ii~~~ 150 (555)
.++..++.++++..
T Consensus 106 ~~~~~GA~v~~~~~ 119 (308)
T 2egu_A 106 LLRAYGAELVLTPG 119 (308)
T ss_dssp HHHHTTCEEEEECG
T ss_pred HHHHcCCEEEEECC
Confidence 77889999998864
No 100
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.62 E-value=2.9e+02 Score=26.11 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=39.6
Q ss_pred HHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCC----CCHHHHHHHhhhc--CCeEEEEcC
Q 008749 85 SLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPL----GSTSEISHQLHLS--KPSIAFATS 150 (555)
Q Consensus 85 ~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~v~~~----~~~~~l~~~l~~~--~~~~ii~~~ 150 (555)
.+.. +++++||.|.+..+....+. .++...|+.++.++.. ...+.+...++.. ++++++...
T Consensus 63 ~~~~-l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 63 ALRV-AGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHH-TTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHH-cCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 3443 45688999888776655443 3445578877666532 4678888888764 566666554
No 101
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=20.54 E-value=62 Score=25.56 Aligned_cols=100 Identities=7% Similarity=-0.038 Sum_probs=48.7
Q ss_pred CCCCceeecCCCCCCCCCCCCCCCHHHHhhcccccCCCCCCCcEEEECC-----------CCceecHHHHHHHH----HH
Q 008749 17 CSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAA-----------TGRRLTYPEFLRQT----NS 81 (555)
Q Consensus 17 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~-----------~~~~~Ty~el~~~v----~~ 81 (555)
.+.++.|.......+....-...+..++........+ ...++|-. ....+.+.++.+.. ..
T Consensus 3 ~~~~~~w~~~~~~~~~~~~~~~is~~el~~~l~~~~~----~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~ 78 (139)
T 3d1p_A 3 KAVMNAWNGTESQSKNVSNIQSYSFEDMKRIVGKHDP----NVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLE 78 (139)
T ss_dssp -----------------CCCEECCHHHHHHHHHHTCT----TEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGGSCHHH
T ss_pred hHHHHHhhccCccCCCCCCcceecHHHHHHHHhCCCC----CeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhccCCHHH
Confidence 3445556654444333333334666665543322222 35666641 11345666664332 24
Q ss_pred HHHHHHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 008749 82 LTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVV 121 (555)
Q Consensus 82 la~~L~~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 121 (555)
+...+.. .++.+++.|.+++..+.....+...+...|..
T Consensus 79 ~~~~~~~-~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 79 FEKQIGI-PKPDSAKELIFYCASGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp HHHHHSS-CCCCTTSEEEEECSSSHHHHHHHHHHHTTTCC
T ss_pred HHHHHhc-cCCCCCCeEEEECCCCchHHHHHHHHHHcCCC
Confidence 4445544 57788899999999988777777777777864
Done!