Query 008750
Match_columns 555
No_of_seqs 425 out of 2751
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 16:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0488 Uup ATPase components 100.0 3.5E-86 7.6E-91 714.0 49.0 446 96-555 2-451 (530)
2 PRK10636 putative ABC transpor 100.0 7.9E-77 1.7E-81 665.0 51.5 441 97-555 1-442 (638)
3 PRK11147 ABC transporter ATPas 100.0 2.8E-75 6.1E-80 653.6 54.1 446 97-555 3-452 (635)
4 PRK11819 putative ABC transpor 100.0 1.2E-72 2.5E-77 624.1 54.7 449 95-555 4-457 (556)
5 PRK15064 ABC transporter ATP-b 100.0 1.6E-72 3.4E-77 620.5 52.3 448 97-555 1-450 (530)
6 KOG0927 Predicted transporter 100.0 5.5E-74 1.2E-78 594.2 36.2 446 93-555 71-521 (614)
7 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.6E-72 1.9E-76 617.0 54.5 448 96-555 3-455 (552)
8 PLN03073 ABC transporter F fam 100.0 7.6E-70 1.6E-74 611.2 52.2 446 93-555 173-639 (718)
9 COG1123 ATPase components of v 100.0 2E-67 4.4E-72 558.1 35.9 379 96-555 4-441 (539)
10 PRK10261 glutathione transport 100.0 9.5E-67 2.1E-71 583.1 38.8 400 94-555 9-475 (623)
11 PRK09700 D-allose transporter 100.0 8.4E-67 1.8E-71 572.6 36.2 377 96-555 4-421 (510)
12 PRK13549 xylose transporter AT 100.0 1.3E-66 2.8E-71 570.5 34.9 371 96-555 4-417 (506)
13 PRK15439 autoinducer 2 ABC tra 100.0 3.7E-66 8E-71 566.9 37.6 370 94-555 8-415 (510)
14 PRK15134 microcin C ABC transp 100.0 6.9E-66 1.5E-70 567.6 36.8 371 96-555 4-437 (529)
15 TIGR03269 met_CoM_red_A2 methy 100.0 1.8E-65 3.9E-70 563.3 38.9 358 98-555 1-439 (520)
16 PRK10762 D-ribose transporter 100.0 9.3E-66 2E-70 563.0 34.6 367 96-555 3-407 (501)
17 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-65 2.4E-70 562.7 35.0 372 97-555 1-415 (500)
18 PRK11288 araG L-arabinose tran 100.0 1.6E-65 3.6E-70 561.1 35.1 368 96-555 3-408 (501)
19 PRK10938 putative molybdenum t 100.0 9.2E-65 2E-69 554.0 33.6 368 97-555 3-413 (490)
20 PRK10982 galactose/methyl gala 100.0 4.6E-64 1E-68 548.5 34.3 365 100-555 1-403 (491)
21 KOG0062 ATPase component of AB 100.0 4.8E-65 1E-69 525.0 23.4 413 95-555 78-494 (582)
22 KOG0066 eIF2-interacting prote 100.0 2.2E-61 4.7E-66 486.5 27.7 437 96-555 263-716 (807)
23 PRK13409 putative ATPase RIL; 100.0 3E-60 6.5E-65 524.6 32.9 356 102-555 78-465 (590)
24 COG4172 ABC-type uncharacteriz 100.0 8.5E-60 1.8E-64 473.1 32.1 372 95-555 4-438 (534)
25 COG3845 ABC-type uncharacteriz 100.0 2E-58 4.3E-63 476.9 29.8 372 96-555 3-415 (501)
26 COG1129 MglA ABC-type sugar tr 100.0 3.6E-58 7.9E-63 484.6 30.6 370 95-555 6-413 (500)
27 KOG0055 Multidrug/pheromone ex 100.0 9.4E-57 2E-61 507.3 37.4 254 50-346 305-586 (1228)
28 COG1126 GlnQ ABC-type polar am 100.0 2.9E-55 6.3E-60 410.4 21.6 211 96-346 1-225 (240)
29 PTZ00265 multidrug resistance 100.0 6.3E-51 1.4E-55 488.0 42.8 266 53-332 342-655 (1466)
30 PLN03232 ABC transporter C fam 100.0 9E-50 2E-54 481.7 44.7 252 48-345 570-827 (1495)
31 PLN03130 ABC transporter C fam 100.0 1.2E-49 2.6E-54 481.2 45.6 251 48-345 570-827 (1622)
32 TIGR00957 MRP_assoc_pro multi 100.0 1.8E-49 3.9E-54 479.8 46.6 254 47-344 588-848 (1522)
33 COG1125 OpuBA ABC-type proline 100.0 6.3E-51 1.4E-55 388.5 18.5 209 97-345 1-224 (309)
34 COG1135 AbcC ABC-type metal io 100.0 1.5E-50 3.3E-55 396.9 21.2 208 97-345 1-230 (339)
35 COG1116 TauB ABC-type nitrate/ 100.0 2.4E-50 5.2E-55 388.2 21.1 197 96-332 2-207 (248)
36 COG1127 Ttg2A ABC-type transpo 100.0 1.5E-49 3.4E-54 377.4 21.1 218 95-351 6-240 (263)
37 COG1124 DppF ABC-type dipeptid 100.0 1.6E-49 3.5E-54 379.1 21.2 200 96-336 2-222 (252)
38 TIGR01257 rim_protein retinal- 100.0 7.9E-47 1.7E-51 453.2 45.8 201 95-335 926-1139(2272)
39 PTZ00243 ABC transporter; Prov 100.0 7.3E-47 1.6E-51 456.3 42.4 196 106-345 669-869 (1560)
40 COG1120 FepC ABC-type cobalami 100.0 1.2E-48 2.6E-53 383.3 21.0 212 97-345 2-227 (258)
41 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.6E-48 3.5E-53 380.5 21.7 214 95-346 2-227 (254)
42 COG1136 SalX ABC-type antimicr 100.0 1.6E-47 3.5E-52 368.4 23.1 198 97-334 1-220 (226)
43 COG3842 PotA ABC-type spermidi 100.0 6.2E-48 1.3E-52 394.1 20.0 213 95-347 3-227 (352)
44 TIGR01271 CFTR_protein cystic 100.0 1.4E-45 3.1E-50 444.7 43.3 191 110-343 439-633 (1490)
45 COG1118 CysA ABC-type sulfate/ 100.0 7.5E-48 1.6E-52 377.0 18.0 209 97-344 2-225 (345)
46 COG3839 MalK ABC-type sugar tr 100.0 3.1E-47 6.6E-52 387.0 21.7 208 96-344 2-221 (338)
47 COG2884 FtsE Predicted ATPase 100.0 3.4E-47 7.4E-52 348.5 17.9 202 97-338 1-219 (223)
48 COG3638 ABC-type phosphate/pho 100.0 6.6E-47 1.4E-51 358.5 20.3 215 96-343 2-234 (258)
49 COG1122 CbiO ABC-type cobalt t 100.0 2.9E-46 6.4E-51 366.0 22.2 210 96-346 2-228 (235)
50 TIGR00956 3a01205 Pleiotropic 100.0 4.7E-45 1E-49 436.9 36.0 199 110-342 74-296 (1394)
51 TIGR02314 ABC_MetN D-methionin 100.0 6.4E-46 1.4E-50 384.7 24.4 208 97-345 1-229 (343)
52 PRK13537 nodulation ABC transp 100.0 1.1E-45 2.4E-50 379.1 25.1 209 95-344 5-225 (306)
53 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-45 3.4E-50 364.7 23.8 208 98-345 1-225 (235)
54 TIGR00960 3a0501s02 Type II (G 100.0 1.5E-45 3.2E-50 360.2 22.5 197 97-333 1-215 (216)
55 COG4555 NatA ABC-type Na+ tran 100.0 3.9E-46 8.4E-51 344.3 17.0 208 97-345 1-221 (245)
56 PRK11650 ugpC glycerol-3-phosp 100.0 2.8E-45 6E-50 382.7 25.2 208 97-345 3-223 (356)
57 PRK11432 fbpC ferric transport 100.0 3.6E-45 7.9E-50 380.8 25.6 210 95-345 4-225 (351)
58 cd03259 ABC_Carb_Solutes_like 100.0 2.4E-45 5.3E-50 358.0 22.4 198 98-335 1-210 (213)
59 TIGR03265 PhnT2 putative 2-ami 100.0 4E-45 8.8E-50 381.1 24.8 209 96-345 3-223 (353)
60 COG1123 ATPase components of v 100.0 3.7E-45 7.9E-50 388.4 24.7 242 64-344 237-517 (539)
61 PRK13536 nodulation factor exp 100.0 6.3E-45 1.4E-49 377.8 25.7 210 94-344 38-259 (340)
62 COG1131 CcmA ABC-type multidru 100.0 6.9E-45 1.5E-49 370.3 25.2 207 97-344 4-224 (293)
63 cd03265 ABC_DrrA DrrA is the A 100.0 8.5E-45 1.8E-49 355.9 23.9 203 98-341 1-216 (220)
64 TIGR01288 nodI ATP-binding ABC 100.0 8.6E-45 1.9E-49 372.6 24.9 208 96-344 3-222 (303)
65 PRK09452 potA putrescine/sperm 100.0 1.8E-44 3.9E-49 378.2 25.8 212 93-345 10-233 (375)
66 KOG0054 Multidrug resistance-a 100.0 4.4E-43 9.5E-48 405.3 39.5 256 46-346 470-731 (1381)
67 PRK11607 potG putrescine trans 100.0 2.8E-44 6E-49 377.3 26.6 211 94-345 16-238 (377)
68 TIGR03258 PhnT 2-aminoethylpho 100.0 1.7E-44 3.7E-49 377.0 24.6 209 97-346 5-228 (362)
69 PRK11000 maltose/maltodextrin 100.0 2E-44 4.3E-49 378.5 24.9 208 97-345 3-222 (369)
70 cd03301 ABC_MalK_N The N-termi 100.0 1.7E-44 3.7E-49 351.9 22.6 199 98-336 1-211 (213)
71 PRK10851 sulfate/thiosulfate t 100.0 2.9E-44 6.2E-49 374.7 25.6 212 97-345 2-225 (353)
72 PRK11831 putative ABC transpor 100.0 2.4E-44 5.2E-49 363.3 24.3 211 95-345 5-232 (269)
73 cd03226 ABC_cobalt_CbiO_domain 100.0 1.3E-44 2.7E-49 350.9 21.1 192 99-334 1-204 (205)
74 COG2274 SunT ABC-type bacterio 100.0 1.4E-44 3.1E-49 402.5 24.4 252 48-347 428-697 (709)
75 cd03296 ABC_CysA_sulfate_impor 100.0 2.6E-44 5.6E-49 357.0 23.6 211 97-344 2-224 (239)
76 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.6E-44 3.4E-49 353.4 21.7 195 98-333 1-217 (218)
77 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.1E-44 6.7E-49 352.0 23.5 198 98-335 1-213 (220)
78 TIGR02673 FtsE cell division A 100.0 2.3E-44 5.1E-49 351.2 22.5 197 97-333 1-214 (214)
79 TIGR03522 GldA_ABC_ATP gliding 100.0 4.6E-44 9.9E-49 366.8 25.7 207 97-344 2-219 (301)
80 PRK11153 metN DL-methionine tr 100.0 3.8E-44 8.3E-49 373.2 25.0 207 97-344 1-228 (343)
81 cd03269 ABC_putative_ATPase Th 100.0 3.9E-44 8.4E-49 348.7 23.4 198 98-335 1-207 (210)
82 PRK10619 histidine/lysine/argi 100.0 6.3E-44 1.4E-48 358.0 25.5 212 95-345 3-240 (257)
83 PRK11247 ssuB aliphatic sulfon 100.0 3.5E-44 7.7E-49 359.1 23.6 199 95-340 10-217 (257)
84 cd03266 ABC_NatA_sodium_export 100.0 3.1E-44 6.7E-49 351.3 22.6 199 97-335 1-215 (218)
85 cd03219 ABC_Mj1267_LivG_branch 100.0 3.1E-44 6.7E-49 355.6 22.8 216 98-344 1-230 (236)
86 PRK13651 cobalt transporter AT 100.0 5.1E-44 1.1E-48 366.3 24.0 209 97-345 2-253 (305)
87 PRK13634 cbiO cobalt transport 100.0 5.5E-44 1.2E-48 364.3 24.1 208 98-345 3-234 (290)
88 PRK15079 oligopeptide ABC tran 100.0 8.3E-44 1.8E-48 368.4 25.3 214 94-345 5-250 (331)
89 cd03268 ABC_BcrA_bacitracin_re 100.0 6.3E-44 1.4E-48 346.7 23.0 194 98-335 1-205 (208)
90 PRK13643 cbiO cobalt transport 100.0 7.1E-44 1.5E-48 363.1 24.4 210 97-346 1-233 (288)
91 PRK11264 putative amino-acid A 100.0 9.1E-44 2E-48 355.3 24.7 209 97-345 3-232 (250)
92 PRK11248 tauB taurine transpor 100.0 6E-44 1.3E-48 357.5 23.4 199 97-335 1-210 (255)
93 PRK09493 glnQ glutamine ABC tr 100.0 9.3E-44 2E-48 353.2 24.4 209 97-345 1-224 (240)
94 cd03218 ABC_YhbG The ABC trans 100.0 6.7E-44 1.4E-48 352.3 23.3 206 98-344 1-220 (232)
95 cd03263 ABC_subfamily_A The AB 100.0 7.2E-44 1.6E-48 349.3 23.3 204 98-342 1-217 (220)
96 KOG0058 Peptide exporter, ABC 100.0 5.5E-44 1.2E-48 384.5 24.4 255 47-347 419-692 (716)
97 cd03256 ABC_PhnC_transporter A 100.0 7.1E-44 1.5E-48 354.1 23.3 214 98-344 1-232 (241)
98 cd03258 ABC_MetN_methionine_tr 100.0 6.9E-44 1.5E-48 352.5 23.0 207 97-344 1-228 (233)
99 PRK10908 cell division protein 100.0 1.1E-43 2.3E-48 348.7 24.0 199 97-335 1-216 (222)
100 cd03264 ABC_drug_resistance_li 100.0 9.2E-44 2E-48 346.3 23.2 197 98-335 1-208 (211)
101 PRK13637 cbiO cobalt transport 100.0 9.8E-44 2.1E-48 361.9 24.3 210 97-346 2-234 (287)
102 TIGR02315 ABC_phnC phosphonate 100.0 6E-44 1.3E-48 355.1 22.2 215 97-344 1-233 (243)
103 COG0411 LivG ABC-type branched 100.0 2.4E-44 5.3E-49 343.8 18.5 222 96-346 3-239 (250)
104 cd03292 ABC_FtsE_transporter F 100.0 8E-44 1.7E-48 347.4 22.3 196 98-333 1-213 (214)
105 PRK09536 btuD corrinoid ABC tr 100.0 1E-43 2.2E-48 374.7 24.7 211 96-345 2-227 (402)
106 cd03262 ABC_HisP_GlnQ_permease 100.0 6.4E-44 1.4E-48 347.8 21.5 197 98-333 1-212 (213)
107 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.1E-43 2.4E-48 353.0 23.5 207 98-344 1-223 (242)
108 PRK11147 ABC transporter ATPas 100.0 1.6E-43 3.4E-48 397.2 27.2 211 94-346 316-528 (635)
109 cd03225 ABC_cobalt_CbiO_domain 100.0 6.5E-44 1.4E-48 347.3 20.8 195 99-333 1-211 (211)
110 PRK10584 putative ABC transpor 100.0 2.1E-43 4.6E-48 347.9 24.6 200 95-335 4-225 (228)
111 PRK11124 artP arginine transpo 100.0 2E-43 4.3E-48 351.2 24.5 208 97-344 2-228 (242)
112 PRK13647 cbiO cobalt transport 100.0 1.3E-43 2.9E-48 358.7 23.6 207 96-343 3-224 (274)
113 COG1117 PstB ABC-type phosphat 100.0 3.3E-44 7.2E-49 334.6 17.6 205 95-339 5-231 (253)
114 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2E-43 4.4E-48 349.9 24.4 207 97-345 1-220 (236)
115 TIGR02211 LolD_lipo_ex lipopro 100.0 1.7E-43 3.7E-48 346.8 23.6 196 98-334 2-219 (221)
116 PRK13631 cbiO cobalt transport 100.0 2.4E-43 5.1E-48 363.5 25.3 214 93-346 17-265 (320)
117 PRK13641 cbiO cobalt transport 100.0 2E-43 4.4E-48 359.7 24.5 209 97-345 2-233 (287)
118 PRK14250 phosphate ABC transpo 100.0 2.1E-43 4.6E-48 350.8 23.9 203 97-344 3-219 (241)
119 PRK13646 cbiO cobalt transport 100.0 1.9E-43 4.1E-48 359.8 23.9 209 98-346 3-235 (286)
120 PRK11308 dppF dipeptide transp 100.0 2.7E-43 5.8E-48 364.2 25.2 211 95-344 3-242 (327)
121 PLN03140 ABC transporter G fam 100.0 1.8E-42 4E-47 413.5 36.0 221 110-341 178-422 (1470)
122 PRK11629 lolD lipoprotein tran 100.0 3E-43 6.5E-48 348.0 24.4 199 96-335 4-224 (233)
123 TIGR03411 urea_trans_UrtD urea 100.0 3.1E-43 6.7E-48 349.8 24.6 216 97-345 2-230 (242)
124 TIGR01188 drrA daunorubicin re 100.0 1.5E-43 3.2E-48 363.3 22.8 199 105-344 1-211 (302)
125 cd03257 ABC_NikE_OppD_transpor 100.0 2.1E-43 4.5E-48 347.7 22.8 201 97-335 1-225 (228)
126 cd03224 ABC_TM1139_LivF_branch 100.0 2E-43 4.3E-48 346.5 22.5 203 98-343 1-218 (222)
127 cd03235 ABC_Metallic_Cations A 100.0 1.3E-43 2.7E-48 345.9 20.8 199 99-333 1-209 (213)
128 COG1137 YhbG ABC-type (unclass 100.0 1.1E-44 2.4E-49 334.3 12.3 211 96-347 3-229 (243)
129 PRK10895 lipopolysaccharide AB 100.0 2.7E-43 5.8E-48 350.1 22.8 209 97-345 3-225 (241)
130 PRK13548 hmuV hemin importer A 100.0 4.2E-43 9E-48 352.2 24.3 208 97-345 2-229 (258)
131 COG3840 ThiQ ABC-type thiamine 100.0 6.2E-44 1.4E-48 324.6 16.3 208 97-347 1-220 (231)
132 TIGR01978 sufC FeS assembly AT 100.0 3.8E-43 8.2E-48 349.3 23.5 214 98-344 1-232 (243)
133 cd03260 ABC_PstB_phosphate_tra 100.0 2.4E-43 5.2E-48 347.3 21.8 202 98-340 1-223 (227)
134 TIGR00972 3a0107s01c2 phosphat 100.0 5.3E-43 1.1E-47 349.3 24.4 209 97-345 1-231 (247)
135 PRK13636 cbiO cobalt transport 100.0 5.1E-43 1.1E-47 356.1 24.6 211 95-346 3-231 (283)
136 PRK15112 antimicrobial peptide 100.0 4.7E-43 1E-47 353.6 23.9 213 95-346 2-239 (267)
137 TIGR02769 nickel_nikE nickel i 100.0 5E-43 1.1E-47 353.0 24.0 210 97-345 2-239 (265)
138 TIGR03005 ectoine_ehuA ectoine 100.0 4.5E-43 9.7E-48 350.8 23.4 208 98-345 1-235 (252)
139 PRK11701 phnK phosphonate C-P 100.0 7E-43 1.5E-47 350.6 24.9 211 96-345 5-240 (258)
140 PRK10070 glycine betaine trans 100.0 5.2E-43 1.1E-47 369.0 25.0 194 111-345 42-253 (400)
141 PRK13638 cbiO cobalt transport 100.0 3.9E-43 8.4E-48 354.9 22.8 208 97-345 1-224 (271)
142 TIGR03410 urea_trans_UrtE urea 100.0 3.4E-43 7.3E-48 346.9 21.7 204 98-344 1-219 (230)
143 PRK09984 phosphonate/organopho 100.0 5.7E-43 1.2E-47 352.1 23.5 217 95-344 2-240 (262)
144 PRK11819 putative ABC transpor 100.0 1.1E-42 2.5E-47 385.0 28.2 215 95-351 322-538 (556)
145 PRK14247 phosphate ABC transpo 100.0 8.7E-43 1.9E-47 348.3 24.6 212 96-345 2-233 (250)
146 PRK14242 phosphate transporter 100.0 9.9E-43 2.1E-47 348.5 24.9 211 94-344 3-235 (253)
147 PRK11300 livG leucine/isoleuci 100.0 7.7E-43 1.7E-47 349.7 23.7 223 96-344 4-241 (255)
148 PRK11022 dppD dipeptide transp 100.0 9.7E-43 2.1E-47 360.1 25.0 210 97-345 3-242 (326)
149 PRK09473 oppD oligopeptide tra 100.0 1.3E-42 2.8E-47 359.5 25.6 213 94-345 9-250 (330)
150 PRK13649 cbiO cobalt transport 100.0 8.8E-43 1.9E-47 354.0 23.7 207 98-344 3-232 (280)
151 PRK10575 iron-hydroxamate tran 100.0 1E-42 2.2E-47 350.7 24.0 213 95-344 9-235 (265)
152 PRK11614 livF leucine/isoleuci 100.0 8.3E-43 1.8E-47 345.7 22.8 207 96-345 4-225 (237)
153 TIGR01186 proV glycine betaine 100.0 7.2E-43 1.6E-47 363.9 23.5 201 105-346 1-219 (363)
154 PRK11231 fecE iron-dicitrate t 100.0 1E-42 2.3E-47 348.8 23.7 212 97-345 2-226 (255)
155 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.6E-43 1.9E-47 339.5 22.3 196 98-335 1-208 (211)
156 PRK14267 phosphate ABC transpo 100.0 1.4E-42 3.1E-47 347.4 24.4 212 96-345 3-236 (253)
157 COG0488 Uup ATPase components 100.0 1.3E-42 2.7E-47 375.6 25.8 209 93-348 317-527 (530)
158 PRK13650 cbiO cobalt transport 100.0 9.3E-43 2E-47 353.5 23.2 208 96-345 3-228 (279)
159 PRK14268 phosphate ABC transpo 100.0 1.6E-42 3.4E-47 348.1 24.6 209 95-344 10-240 (258)
160 COG4598 HisP ABC-type histidin 100.0 1E-43 2.2E-48 322.1 14.2 211 96-346 5-241 (256)
161 PRK13645 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 354.6 23.9 210 96-345 5-239 (289)
162 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.1E-43 1.3E-47 353.1 21.2 206 99-345 26-249 (269)
163 PRK10253 iron-enterobactin tra 100.0 1.2E-42 2.5E-47 350.3 23.2 213 95-344 5-231 (265)
164 PRK10636 putative ABC transpor 100.0 1.2E-42 2.6E-47 389.4 25.6 207 94-346 309-517 (638)
165 PRK15093 antimicrobial peptide 100.0 1.7E-42 3.8E-47 359.1 24.9 216 96-345 2-247 (330)
166 PRK10247 putative ABC transpor 100.0 1E-42 2.2E-47 342.5 21.8 204 95-341 5-222 (225)
167 PRK13652 cbiO cobalt transport 100.0 1.8E-42 3.9E-47 351.1 24.3 210 96-346 2-227 (277)
168 TIGR03873 F420-0_ABC_ATP propo 100.0 1.8E-42 3.8E-47 347.3 23.9 211 98-345 2-225 (256)
169 PRK14273 phosphate ABC transpo 100.0 2.2E-42 4.8E-47 346.2 24.6 210 95-344 5-236 (254)
170 TIGR02323 CP_lyasePhnK phospho 100.0 2.3E-42 5E-47 345.9 24.6 211 96-345 2-237 (253)
171 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.7E-42 5.8E-47 381.8 27.2 212 95-348 320-533 (552)
172 PRK14241 phosphate transporter 100.0 3.8E-42 8.3E-47 345.3 25.2 210 97-345 4-241 (258)
173 PRK10744 pstB phosphate transp 100.0 3.4E-42 7.3E-47 346.0 24.7 211 95-345 11-243 (260)
174 PRK10771 thiQ thiamine transpo 100.0 2.5E-42 5.4E-47 341.2 23.2 207 97-346 1-219 (232)
175 COG4172 ABC-type uncharacteriz 100.0 1.9E-42 4.1E-47 348.2 22.3 244 64-346 240-516 (534)
176 PRK13644 cbiO cobalt transport 100.0 3.1E-42 6.7E-47 348.8 23.8 207 97-345 1-223 (274)
177 PRK13639 cbiO cobalt transport 100.0 3.3E-42 7.2E-47 348.8 24.0 208 97-345 1-225 (275)
178 PRK13543 cytochrome c biogenes 100.0 2.4E-42 5.2E-47 337.2 22.1 194 95-331 9-212 (214)
179 PRK14248 phosphate ABC transpo 100.0 4.5E-42 9.7E-47 346.7 24.7 211 94-344 18-250 (268)
180 PRK14256 phosphate ABC transpo 100.0 4.8E-42 1E-46 343.4 24.6 210 96-344 3-234 (252)
181 TIGR03740 galliderm_ABC gallid 100.0 3.3E-42 7.1E-47 338.3 22.9 199 98-341 1-208 (223)
182 PRK14235 phosphate transporter 100.0 6.4E-42 1.4E-46 345.3 25.4 212 94-344 16-249 (267)
183 PRK13635 cbiO cobalt transport 100.0 3.2E-42 7E-47 349.4 23.3 208 96-345 4-228 (279)
184 cd03300 ABC_PotA_N PotA is an 100.0 4.5E-42 9.8E-47 339.4 23.6 206 98-344 1-218 (232)
185 COG4181 Predicted ABC-type tra 100.0 1.9E-42 4.1E-47 311.8 18.5 198 97-335 6-225 (228)
186 PRK14245 phosphate ABC transpo 100.0 7.7E-42 1.7E-46 341.5 24.6 210 96-345 2-233 (250)
187 COG0444 DppD ABC-type dipeptid 100.0 6E-42 1.3E-46 340.9 23.2 209 98-345 2-242 (316)
188 PRK09544 znuC high-affinity zi 100.0 6.3E-42 1.4E-46 342.0 23.6 200 96-345 3-208 (251)
189 PRK14269 phosphate ABC transpo 100.0 8.1E-42 1.8E-46 340.5 24.3 209 97-344 2-228 (246)
190 PRK11144 modC molybdate transp 100.0 5.6E-42 1.2E-46 358.2 24.1 198 97-344 1-216 (352)
191 PRK15064 ABC transporter ATP-b 100.0 6.9E-42 1.5E-46 377.1 26.1 208 95-347 317-526 (530)
192 COG4152 ABC-type uncharacteriz 100.0 1.5E-42 3.3E-47 329.1 17.7 206 97-343 2-216 (300)
193 PRK14251 phosphate ABC transpo 100.0 8.5E-42 1.8E-46 341.4 24.0 209 96-344 3-233 (251)
194 PRK14237 phosphate transporter 100.0 1.2E-41 2.6E-46 343.3 25.1 212 94-345 17-250 (267)
195 COG0410 LivF ABC-type branched 100.0 8.5E-42 1.8E-46 324.0 22.4 210 96-346 2-226 (237)
196 PRK14274 phosphate ABC transpo 100.0 1.1E-41 2.4E-46 342.1 24.6 212 94-345 9-242 (259)
197 PRK14239 phosphate transporter 100.0 1.2E-41 2.6E-46 340.5 24.6 209 96-344 4-234 (252)
198 cd03299 ABC_ModC_like Archeal 100.0 9.6E-42 2.1E-46 337.7 23.5 206 98-345 1-218 (235)
199 cd03297 ABC_ModC_molybdenum_tr 100.0 6.6E-42 1.4E-46 334.0 22.0 192 98-335 2-211 (214)
200 PRK14272 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 340.2 24.5 210 97-345 4-235 (252)
201 PRK14270 phosphate ABC transpo 100.0 1.2E-41 2.5E-46 340.4 24.0 210 95-344 2-233 (251)
202 COG4175 ProV ABC-type proline/ 100.0 2.1E-42 4.4E-47 339.0 18.1 209 97-346 4-254 (386)
203 PRK14240 phosphate transporter 100.0 1.4E-41 3.1E-46 339.6 24.6 208 97-344 3-232 (250)
204 TIGR03608 L_ocin_972_ABC putat 100.0 5.3E-42 1.2E-46 332.6 20.7 189 100-329 1-206 (206)
205 PRK14275 phosphate ABC transpo 100.0 2.2E-41 4.7E-46 344.5 25.9 211 94-344 36-268 (286)
206 PRK14259 phosphate ABC transpo 100.0 1.5E-41 3.2E-46 343.0 24.4 197 94-331 10-228 (269)
207 PRK13538 cytochrome c biogenes 100.0 6.7E-42 1.4E-46 331.6 21.0 190 97-329 1-202 (204)
208 PRK13632 cbiO cobalt transport 100.0 8.7E-42 1.9E-46 345.0 22.6 207 96-344 6-229 (271)
209 TIGR02324 CP_lyasePhnL phospho 100.0 9.7E-42 2.1E-46 335.1 22.3 195 97-330 1-223 (224)
210 PRK10419 nikE nickel transport 100.0 1.5E-41 3.3E-46 342.7 24.1 207 96-341 2-236 (268)
211 TIGR01277 thiQ thiamine ABC tr 100.0 1E-41 2.2E-46 332.5 22.2 196 98-335 1-208 (213)
212 PRK13633 cobalt transporter AT 100.0 1E-41 2.2E-46 346.1 22.9 208 96-345 3-232 (280)
213 TIGR02142 modC_ABC molybdenum 100.0 1.1E-41 2.5E-46 356.3 23.8 197 102-343 4-218 (354)
214 PRK14254 phosphate ABC transpo 100.0 3.1E-41 6.7E-46 343.1 26.2 210 93-344 35-267 (285)
215 PRK10418 nikD nickel transport 100.0 2.3E-41 5.1E-46 338.8 24.8 206 97-345 4-229 (254)
216 PRK14262 phosphate ABC transpo 100.0 2.3E-41 5E-46 338.0 24.5 209 96-344 2-232 (250)
217 PRK14271 phosphate ABC transpo 100.0 2.3E-41 5.1E-46 342.6 24.6 211 95-345 19-250 (276)
218 TIGR00968 3a0106s01 sulfate AB 100.0 2E-41 4.3E-46 335.8 23.5 206 98-344 1-218 (237)
219 PRK14255 phosphate ABC transpo 100.0 2.4E-41 5.2E-46 338.3 24.3 205 95-338 3-229 (252)
220 PRK14238 phosphate transporter 100.0 2E-41 4.4E-46 342.3 23.9 212 94-345 21-254 (271)
221 PRK13640 cbiO cobalt transport 100.0 1.5E-41 3.2E-46 345.2 22.9 208 96-345 4-231 (282)
222 TIGR03415 ABC_choXWV_ATP choli 100.0 8.5E-42 1.8E-46 357.5 21.8 204 101-345 28-253 (382)
223 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2E-41 4.2E-46 386.0 26.7 214 95-346 475-700 (710)
224 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.5E-41 5.3E-46 383.7 27.1 255 48-346 407-673 (686)
225 PRK13648 cbiO cobalt transport 100.0 1.5E-41 3.3E-46 343.0 22.6 208 95-344 5-229 (269)
226 PRK14249 phosphate ABC transpo 100.0 3.3E-41 7.2E-46 337.1 24.7 209 96-344 3-233 (251)
227 PRK09580 sufC cysteine desulfu 100.0 2.9E-41 6.3E-46 336.8 24.1 213 97-342 1-231 (248)
228 PRK13547 hmuV hemin importer A 100.0 2E-41 4.4E-46 341.9 23.3 210 97-343 1-241 (272)
229 PRK13642 cbiO cobalt transport 100.0 2.2E-41 4.7E-46 343.2 23.3 208 96-345 3-228 (277)
230 PRK11174 cysteine/glutathione 100.0 4.6E-41 1E-45 375.3 28.1 258 47-348 302-574 (588)
231 cd03231 ABC_CcmA_heme_exporter 100.0 1.3E-41 2.9E-46 328.7 20.5 186 98-329 1-198 (201)
232 PRK10261 glutathione transport 100.0 2.2E-41 4.7E-46 378.8 25.3 212 95-345 311-552 (623)
233 PRK14253 phosphate ABC transpo 100.0 3.6E-41 7.7E-46 336.5 23.9 208 97-344 3-231 (249)
234 cd03267 ABC_NatA_like Similar 100.0 1.7E-41 3.8E-46 336.1 21.3 191 105-335 29-233 (236)
235 COG4525 TauB ABC-type taurine 100.0 7.2E-42 1.6E-46 314.2 17.0 197 96-332 2-209 (259)
236 TIGR02982 heterocyst_DevA ABC 100.0 3.1E-41 6.7E-46 330.8 22.7 197 98-334 2-219 (220)
237 PRK14260 phosphate ABC transpo 100.0 5.4E-41 1.2E-45 337.2 24.5 209 96-344 6-241 (259)
238 CHL00131 ycf16 sulfate ABC tra 100.0 5.1E-41 1.1E-45 335.9 23.7 215 95-342 5-237 (252)
239 PRK14246 phosphate ABC transpo 100.0 5.2E-41 1.1E-45 336.7 23.6 213 94-345 7-240 (257)
240 PRK14244 phosphate ABC transpo 100.0 5.9E-41 1.3E-45 335.3 23.7 208 98-344 6-235 (251)
241 cd03245 ABCC_bacteriocin_expor 100.0 2.8E-41 6.1E-46 330.9 21.0 191 98-335 3-217 (220)
242 PRK14236 phosphate transporter 100.0 9.9E-41 2.2E-45 337.5 25.3 211 95-345 23-255 (272)
243 PRK10790 putative multidrug tr 100.0 1E-40 2.2E-45 372.7 27.3 255 48-347 297-564 (592)
244 PRK14261 phosphate ABC transpo 100.0 1E-40 2.2E-45 334.0 24.5 210 95-344 4-235 (253)
245 COG4988 CydD ABC-type transpor 100.0 7.8E-41 1.7E-45 354.0 24.2 262 44-347 269-544 (559)
246 PRK14243 phosphate transporter 100.0 1E-40 2.3E-45 335.9 24.1 209 95-345 8-247 (264)
247 PRK14258 phosphate ABC transpo 100.0 1.6E-40 3.5E-45 334.0 25.1 210 96-345 6-244 (261)
248 COG1245 Predicted ATPase, RNas 100.0 1.5E-40 3.3E-45 338.7 24.9 374 102-555 79-467 (591)
249 COG4987 CydC ABC-type transpor 100.0 2.1E-41 4.5E-46 353.0 18.7 245 57-346 301-561 (573)
250 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-40 2.3E-45 378.9 26.3 257 48-346 433-702 (711)
251 PRK14265 phosphate ABC transpo 100.0 1.7E-40 3.7E-45 336.0 24.9 210 94-345 17-257 (274)
252 cd03230 ABC_DR_subfamily_A Thi 100.0 7.5E-41 1.6E-45 315.8 20.7 160 98-333 1-172 (173)
253 cd03254 ABCC_Glucan_exporter_l 100.0 7.1E-41 1.5E-45 330.1 21.1 209 97-345 2-225 (229)
254 PRK15056 manganese/iron transp 100.0 9.9E-41 2.2E-45 337.5 22.7 210 97-344 6-228 (272)
255 COG1132 MdlB ABC-type multidru 100.0 1.6E-40 3.4E-45 369.4 26.2 254 47-347 283-553 (567)
256 TIGR01193 bacteriocin_ABC ABC- 100.0 1.4E-40 3E-45 378.8 26.4 259 48-346 427-697 (708)
257 cd03251 ABCC_MsbA MsbA is an e 100.0 9.6E-41 2.1E-45 330.2 21.8 208 98-345 1-224 (234)
258 TIGR03269 met_CoM_red_A2 methy 100.0 1.3E-40 2.9E-45 366.2 25.2 209 95-344 277-515 (520)
259 PRK11176 lipid transporter ATP 100.0 1.2E-40 2.7E-45 371.6 24.9 258 48-347 297-568 (582)
260 cd03252 ABCC_Hemolysin The ABC 100.0 1.3E-40 2.7E-45 330.0 21.9 208 98-345 1-224 (237)
261 KOG0057 Mitochondrial Fe/S clu 100.0 2.4E-40 5.2E-45 345.2 24.8 253 48-346 307-574 (591)
262 TIGR03375 type_I_sec_LssB type 100.0 2E-40 4.4E-45 376.7 26.4 258 48-346 417-688 (694)
263 PRK11160 cysteine/glutathione 100.0 2.2E-40 4.8E-45 368.2 25.6 250 55-347 300-563 (574)
264 TIGR01184 ntrCD nitrate transp 100.0 8.1E-41 1.8E-45 330.0 19.7 189 113-340 1-198 (230)
265 cd03229 ABC_Class3 This class 100.0 1.4E-40 3.1E-45 315.4 20.1 162 98-333 1-178 (178)
266 PRK14252 phosphate ABC transpo 100.0 4.3E-40 9.4E-45 331.7 24.6 210 95-344 14-247 (265)
267 PRK13539 cytochrome c biogenes 100.0 1.5E-40 3.2E-45 323.0 20.4 189 97-331 2-200 (207)
268 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.3E-40 2.8E-45 327.2 20.1 196 98-335 23-221 (224)
269 PRK14257 phosphate ABC transpo 100.0 4.5E-40 9.8E-45 340.2 25.0 212 94-345 77-312 (329)
270 cd03248 ABCC_TAP TAP, the Tran 100.0 1.9E-40 4.1E-45 326.4 21.0 201 94-333 8-225 (226)
271 cd03223 ABCD_peroxisomal_ALDP 100.0 2.4E-40 5.3E-45 310.2 20.7 163 98-333 1-164 (166)
272 PRK13657 cyclic beta-1,2-gluca 100.0 4.2E-40 9.1E-45 367.5 26.4 258 48-346 288-558 (588)
273 PRK13540 cytochrome c biogenes 100.0 1.7E-40 3.7E-45 320.8 20.2 185 97-327 1-197 (200)
274 PRK14264 phosphate ABC transpo 100.0 6.4E-40 1.4E-44 336.6 25.2 224 93-345 41-288 (305)
275 PRK14266 phosphate ABC transpo 100.0 5.7E-40 1.2E-44 328.0 24.0 209 97-345 3-233 (250)
276 TIGR01189 ccmA heme ABC export 100.0 1.6E-40 3.5E-45 320.4 19.3 185 98-328 1-197 (198)
277 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3E-40 6.4E-45 327.6 21.6 208 98-345 1-225 (238)
278 cd03234 ABCG_White The White s 100.0 3E-40 6.6E-45 325.0 21.3 202 97-335 3-223 (226)
279 COG4608 AppF ABC-type oligopep 100.0 1.3E-40 2.8E-45 324.8 18.3 180 96-342 3-195 (268)
280 cd03250 ABCC_MRP_domain1 Domai 100.0 4.3E-40 9.4E-45 318.9 21.7 193 98-333 1-204 (204)
281 KOG0055 Multidrug/pheromone ex 100.0 3.3E-40 7.1E-45 373.5 23.8 245 59-347 951-1214(1228)
282 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.9E-40 8.5E-45 332.4 22.0 199 97-346 2-225 (275)
283 PRK14263 phosphate ABC transpo 100.0 1.3E-39 2.8E-44 327.4 25.5 209 95-345 6-244 (261)
284 PRK15134 microcin C ABC transp 100.0 3.2E-40 6.9E-45 363.8 23.1 212 95-345 273-514 (529)
285 PLN03073 ABC transporter F fam 100.0 7.9E-40 1.7E-44 368.3 26.2 208 95-346 506-714 (718)
286 cd03369 ABCC_NFT1 Domain 2 of 100.0 1E-39 2.2E-44 317.0 22.9 185 96-336 5-203 (207)
287 cd03244 ABCC_MRP_domain2 Domai 100.0 6.3E-40 1.4E-44 321.5 21.4 201 98-336 3-217 (221)
288 PRK13549 xylose transporter AT 100.0 2.8E-40 6.1E-45 362.3 20.7 214 95-343 257-491 (506)
289 cd03253 ABCC_ATM1_transporter 100.0 9.6E-40 2.1E-44 323.5 22.4 208 98-345 1-223 (236)
290 cd03215 ABC_Carb_Monos_II This 100.0 5.6E-40 1.2E-44 312.5 19.9 162 96-333 3-181 (182)
291 cd03247 ABCC_cytochrome_bd The 100.0 7.3E-40 1.6E-44 310.5 20.3 162 98-335 1-175 (178)
292 COG4559 ABC-type hemin transpo 100.0 4.8E-40 1E-44 306.2 18.2 209 97-346 1-230 (259)
293 cd03213 ABCG_EPDR ABCG transpo 100.0 1.1E-39 2.4E-44 313.5 20.9 170 97-335 3-191 (194)
294 PRK09700 D-allose transporter 100.0 4.2E-40 9.2E-45 361.4 20.5 210 95-336 263-489 (510)
295 cd03246 ABCC_Protease_Secretio 100.0 7.5E-40 1.6E-44 309.0 19.3 157 98-333 1-172 (173)
296 PRK13545 tagH teichoic acids e 100.0 3.9E-39 8.5E-44 343.7 27.0 208 95-346 19-232 (549)
297 TIGR02633 xylG D-xylose ABC tr 100.0 5.3E-40 1.1E-44 359.9 20.6 207 95-335 255-482 (500)
298 TIGR01192 chvA glucan exporter 100.0 2.4E-39 5.2E-44 360.5 26.1 259 48-347 288-559 (585)
299 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-39 2.5E-44 363.0 23.4 256 47-346 285-556 (571)
300 cd03214 ABC_Iron-Siderophores_ 100.0 4.2E-40 9E-45 312.8 16.9 173 99-335 1-177 (180)
301 TIGR02770 nickel_nikD nickel i 100.0 1.3E-39 2.9E-44 321.4 21.1 194 112-345 1-214 (230)
302 PRK13546 teichoic acids export 100.0 7.4E-39 1.6E-43 321.8 26.9 206 97-346 4-232 (264)
303 cd03232 ABC_PDR_domain2 The pl 100.0 2.1E-39 4.6E-44 311.1 21.7 170 97-335 3-189 (192)
304 TIGR01842 type_I_sec_PrtD type 100.0 5E-39 1.1E-43 355.6 27.6 252 48-345 273-541 (544)
305 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.6E-39 3.5E-44 314.0 20.3 170 98-339 1-187 (200)
306 PRK03695 vitamin B12-transport 100.0 1.6E-39 3.4E-44 324.4 20.4 199 99-344 2-220 (248)
307 COG4161 ArtP ABC-type arginine 100.0 9.1E-40 2E-44 291.6 16.2 209 97-345 2-229 (242)
308 cd03288 ABCC_SUR2 The SUR doma 100.0 6.9E-39 1.5E-43 321.5 24.2 213 93-346 15-243 (257)
309 cd03290 ABCC_SUR1_N The SUR do 100.0 3.8E-39 8.3E-44 315.5 21.8 196 99-332 2-217 (218)
310 TIGR01846 type_I_sec_HlyB type 100.0 4E-39 8.7E-44 365.9 25.3 256 48-347 410-681 (694)
311 PRK10789 putative multidrug tr 100.0 5.7E-39 1.2E-43 356.7 25.8 256 48-346 269-538 (569)
312 TIGR02204 MsbA_rel ABC transpo 100.0 6.1E-39 1.3E-43 357.5 25.8 257 48-346 290-563 (576)
313 PTZ00265 multidrug resistance 100.0 4.1E-39 9E-44 386.4 26.0 257 53-346 1120-1452(1466)
314 PRK13541 cytochrome c biogenes 100.0 3.6E-39 7.9E-44 310.2 19.9 183 97-326 1-192 (195)
315 cd03228 ABCC_MRP_Like The MRP 100.0 3.8E-39 8.2E-44 303.7 19.3 157 98-333 1-171 (171)
316 PRK10522 multidrug transporter 100.0 1.2E-38 2.6E-43 352.6 25.9 239 48-342 278-535 (547)
317 cd03233 ABC_PDR_domain1 The pl 100.0 9E-39 1.9E-43 309.2 21.8 176 97-335 3-199 (202)
318 cd03216 ABC_Carb_Monos_I This 100.0 6.9E-39 1.5E-43 299.5 20.1 158 98-335 1-161 (163)
319 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.1E-39 9E-44 320.5 19.4 183 105-333 1-193 (246)
320 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.8E-38 8.1E-43 319.1 26.1 208 93-345 35-246 (282)
321 PRK13409 putative ATPase RIL; 100.0 6.9E-39 1.5E-43 354.6 22.0 191 94-334 337-531 (590)
322 PRK10982 galactose/methyl gala 100.0 3.9E-39 8.4E-44 352.2 19.3 206 95-335 248-470 (491)
323 TIGR01166 cbiO cobalt transpor 100.0 3.2E-39 7E-44 309.2 16.4 172 107-318 2-189 (190)
324 PRK11288 araG L-arabinose tran 100.0 3.8E-39 8.3E-44 353.0 19.2 213 95-345 255-484 (501)
325 TIGR02857 CydD thiol reductant 100.0 1.8E-38 3.8E-43 350.3 24.6 239 49-329 277-529 (529)
326 PLN03232 ABC transporter C fam 100.0 2E-38 4.3E-43 383.4 26.8 257 52-347 1189-1459(1495)
327 TIGR02868 CydC thiol reductant 100.0 1.6E-38 3.6E-43 350.5 23.3 230 50-316 288-529 (529)
328 PLN03130 ABC transporter C fam 100.0 2.9E-38 6.3E-43 382.4 27.3 251 58-347 1198-1462(1622)
329 PRK10762 D-ribose transporter 100.0 1E-38 2.2E-43 349.7 20.8 209 95-342 255-480 (501)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.3E-38 5E-43 289.8 19.8 144 98-333 1-144 (144)
331 PRK10938 putative molybdenum t 100.0 1E-38 2.2E-43 348.9 20.5 208 95-337 258-484 (490)
332 COG4604 CeuD ABC-type enteroch 100.0 9.3E-40 2E-44 300.8 9.3 211 97-346 1-225 (252)
333 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-38 2.5E-43 349.6 19.8 206 95-342 266-488 (510)
334 COG1119 ModF ABC-type molybden 100.0 5.7E-39 1.2E-43 306.9 14.7 208 93-335 27-252 (257)
335 COG4619 ABC-type uncharacteriz 100.0 2E-39 4.2E-44 291.4 10.7 195 98-334 4-212 (223)
336 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.1E-38 1.8E-42 346.3 25.0 239 47-335 282-549 (555)
337 TIGR01257 rim_protein retinal- 100.0 6.3E-38 1.4E-42 376.9 25.8 208 95-343 1935-2156(2272)
338 TIGR00957 MRP_assoc_pro multi 100.0 9.8E-38 2.1E-42 377.9 27.1 260 48-346 1235-1508(1522)
339 TIGR00954 3a01203 Peroxysomal 100.0 1.2E-37 2.6E-42 350.3 25.4 244 47-332 381-654 (659)
340 COG4618 ArpD ABC-type protease 100.0 1.9E-37 4.1E-42 320.7 23.1 243 48-337 291-552 (580)
341 KOG0056 Heavy metal exporter H 100.0 3.2E-38 6.9E-43 322.9 17.2 247 55-346 498-761 (790)
342 TIGR03771 anch_rpt_ABC anchore 100.0 2.2E-37 4.7E-42 304.1 20.9 191 118-346 1-201 (223)
343 PTZ00243 ABC transporter; Prov 100.0 4.3E-37 9.3E-42 371.6 27.4 212 96-346 1307-1533(1560)
344 PLN03211 ABC transporter G-25; 100.0 1.7E-37 3.6E-42 347.6 19.6 209 99-344 70-294 (659)
345 PRK15177 Vi polysaccharide exp 100.0 7.1E-37 1.5E-41 298.3 21.1 187 111-344 1-190 (213)
346 COG4674 Uncharacterized ABC-ty 100.0 1.4E-37 3E-42 286.1 15.0 216 96-344 4-233 (249)
347 COG4148 ModC ABC-type molybdat 100.0 7.7E-38 1.7E-42 302.1 13.7 190 103-341 6-213 (352)
348 cd03236 ABC_RNaseL_inhibitor_d 100.0 8.1E-37 1.8E-41 305.3 18.3 184 101-331 4-214 (255)
349 TIGR01271 CFTR_protein cystic 100.0 3.5E-36 7.7E-41 363.4 27.1 212 95-346 1215-1440(1490)
350 cd03222 ABC_RNaseL_inhibitor T 100.0 1.5E-36 3.2E-41 286.3 17.8 142 101-333 4-149 (177)
351 PRK10535 macrolide transporter 100.0 5.8E-36 1.3E-40 336.3 25.1 205 96-342 3-228 (648)
352 TIGR01187 potA spermidine/putr 100.0 1.5E-36 3.4E-41 314.0 18.7 177 128-345 1-189 (325)
353 COG4586 ABC-type uncharacteriz 100.0 1.3E-36 2.8E-41 293.0 15.2 195 111-346 38-246 (325)
354 COG4167 SapF ABC-type antimicr 100.0 8.6E-36 1.9E-40 271.3 15.8 212 95-343 2-236 (267)
355 COG5265 ATM1 ABC-type transpor 100.0 1.2E-35 2.7E-40 301.0 17.6 251 52-346 219-486 (497)
356 KOG0927 Predicted transporter 100.0 5.7E-36 1.2E-40 311.4 15.1 209 94-347 386-597 (614)
357 COG1134 TagH ABC-type polysacc 100.0 1.2E-34 2.5E-39 277.8 22.5 194 110-347 40-237 (249)
358 COG4107 PhnK ABC-type phosphon 100.0 5.4E-35 1.2E-39 264.1 16.5 204 95-336 4-232 (258)
359 COG0396 sufC Cysteine desulfur 100.0 3.9E-34 8.4E-39 270.7 23.0 209 96-341 2-229 (251)
360 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.2E-34 2.7E-39 269.0 19.0 153 100-333 2-157 (157)
361 COG4136 ABC-type uncharacteriz 100.0 2E-35 4.2E-40 261.0 12.4 191 97-329 2-207 (213)
362 COG4778 PhnL ABC-type phosphon 100.0 3.6E-35 7.7E-40 264.4 13.2 196 97-331 4-227 (235)
363 cd03238 ABC_UvrA The excision 100.0 1.7E-34 3.8E-39 271.9 17.4 149 110-334 8-166 (176)
364 TIGR00956 3a01205 Pleiotropic 100.0 4.5E-34 9.7E-39 342.6 22.0 207 96-340 758-987 (1394)
365 TIGR00955 3a01204 The Eye Pigm 100.0 2.5E-34 5.4E-39 321.6 18.3 199 109-345 37-255 (617)
366 COG1101 PhnK ABC-type uncharac 100.0 1.7E-34 3.7E-39 269.7 14.0 207 97-336 1-229 (263)
367 PRK00635 excinuclease ABC subu 100.0 2.8E-33 6.1E-38 331.9 26.1 195 234-484 785-991 (1809)
368 KOG0054 Multidrug resistance-a 100.0 3.8E-33 8.2E-38 323.1 21.3 246 59-342 1100-1359(1381)
369 PLN03140 ABC transporter G fam 100.0 4.9E-33 1.1E-37 332.8 22.5 206 97-340 867-1104(1470)
370 COG4133 CcmA ABC-type transpor 100.0 2.4E-33 5.3E-38 257.4 14.2 181 97-320 2-194 (209)
371 cd03270 ABC_UvrA_I The excisio 100.0 9E-32 1.9E-36 264.7 20.1 95 240-335 118-223 (226)
372 KOG0062 ATPase component of AB 100.0 1.6E-31 3.6E-36 276.8 17.8 210 93-346 358-569 (582)
373 KOG0066 eIF2-interacting prote 100.0 2.7E-31 5.9E-36 268.9 13.5 206 94-346 583-791 (807)
374 KOG0059 Lipid exporter ABCA1 a 100.0 1.3E-30 2.9E-35 300.9 18.3 205 96-341 563-782 (885)
375 PRK00349 uvrA excinuclease ABC 100.0 6.2E-30 1.3E-34 292.6 22.6 180 235-471 466-656 (943)
376 KOG0061 Transporter, ABC super 100.0 1E-29 2.2E-34 282.2 19.9 209 96-342 24-256 (613)
377 TIGR00630 uvra excinuclease AB 100.0 2.6E-29 5.6E-34 287.0 23.6 171 242-468 470-651 (924)
378 PRK00635 excinuclease ABC subu 100.0 5.2E-29 1.1E-33 295.8 23.7 170 242-468 459-639 (1809)
379 PF00005 ABC_tran: ABC transpo 100.0 6.5E-30 1.4E-34 231.4 12.1 124 113-288 1-137 (137)
380 cd03278 ABC_SMC_barmotin Barmo 100.0 1.6E-29 3.6E-34 243.2 13.9 155 114-331 14-190 (197)
381 COG1126 GlnQ ABC-type polar am 100.0 4.5E-29 9.8E-34 234.4 11.3 129 424-555 2-148 (240)
382 cd03271 ABC_UvrA_II The excisi 100.0 7.5E-28 1.6E-32 240.1 17.4 218 111-339 9-259 (261)
383 cd03272 ABC_SMC3_euk Eukaryoti 100.0 6.8E-28 1.5E-32 239.7 15.4 182 98-330 4-234 (243)
384 cd03279 ABC_sbcCD SbcCD and ot 100.0 9.3E-28 2E-32 234.1 14.9 182 97-333 5-210 (213)
385 COG4178 ABC-type uncharacteriz 100.0 3.6E-27 7.8E-32 254.2 20.8 191 95-331 390-588 (604)
386 COG1116 TauB ABC-type nitrate/ 100.0 5E-28 1.1E-32 233.7 12.1 130 423-555 2-142 (248)
387 COG1129 MglA ABC-type sugar tr 99.9 2.9E-27 6.3E-32 250.4 17.9 205 94-336 260-481 (500)
388 COG1245 Predicted ATPase, RNas 99.9 2.6E-27 5.6E-32 242.2 15.7 186 96-330 341-530 (591)
389 COG1124 DppF ABC-type dipeptid 99.9 2.6E-27 5.7E-32 226.8 12.5 133 423-555 2-153 (252)
390 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 4.2E-27 9.1E-32 230.1 13.8 132 423-555 3-151 (254)
391 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.5E-27 5.4E-32 236.9 12.4 188 98-330 6-242 (251)
392 KOG0063 RNAse L inhibitor, ABC 99.9 3.9E-26 8.5E-31 231.6 20.1 351 121-555 98-468 (592)
393 COG4138 BtuD ABC-type cobalami 99.9 9.7E-28 2.1E-32 217.4 6.0 194 97-341 3-216 (248)
394 COG3842 PotA ABC-type spermidi 99.9 5.8E-27 1.2E-31 240.0 11.9 131 422-555 3-148 (352)
395 COG4615 PvdE ABC-type sideroph 99.9 1.7E-25 3.6E-30 225.3 20.8 200 96-339 321-531 (546)
396 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.6E-27 3.4E-32 232.0 5.5 191 98-331 6-204 (212)
397 COG1120 FepC ABC-type cobalami 99.9 1.4E-26 3.1E-31 227.5 11.1 129 424-555 2-150 (258)
398 COG3839 MalK ABC-type sugar tr 99.9 2.3E-26 5E-31 234.4 12.9 129 424-555 3-145 (338)
399 cd03240 ABC_Rad50 The catalyti 99.9 3.5E-26 7.6E-31 221.4 13.4 168 98-332 4-198 (204)
400 COG1136 SalX ABC-type antimicr 99.9 1.5E-25 3.2E-30 216.3 13.0 129 425-555 2-154 (226)
401 COG1125 OpuBA ABC-type proline 99.9 7.4E-26 1.6E-30 216.9 9.7 129 425-555 2-147 (309)
402 KOG0065 Pleiotropic drug resis 99.9 4.1E-24 9E-29 243.0 22.3 203 110-344 128-349 (1391)
403 COG1127 Ttg2A ABC-type transpo 99.9 4.5E-25 9.8E-30 210.5 12.0 132 422-555 6-157 (263)
404 COG3845 ABC-type uncharacteriz 99.9 2.1E-24 4.5E-29 224.4 17.7 211 93-335 253-482 (501)
405 COG1122 CbiO ABC-type cobalt t 99.9 4.8E-25 1E-29 216.3 12.0 131 423-555 2-150 (235)
406 PRK00349 uvrA excinuclease ABC 99.9 6.7E-24 1.4E-28 243.2 21.6 107 238-346 809-927 (943)
407 COG4170 SapD ABC-type antimicr 99.9 7E-25 1.5E-29 204.1 10.7 206 96-334 2-237 (330)
408 cd03275 ABC_SMC1_euk Eukaryoti 99.9 7.5E-25 1.6E-29 218.5 11.2 77 254-331 150-233 (247)
409 PRK11247 ssuB aliphatic sulfon 99.9 2.3E-24 5E-29 216.0 14.3 132 421-555 9-145 (257)
410 KOG0060 Long-chain acyl-CoA tr 99.9 1.3E-23 2.9E-28 220.8 20.4 209 93-332 429-642 (659)
411 COG3638 ABC-type phosphate/pho 99.9 1.3E-24 2.8E-29 206.8 11.2 130 423-555 2-159 (258)
412 COG1118 CysA ABC-type sulfate/ 99.9 6.1E-25 1.3E-29 216.0 8.9 128 425-555 3-149 (345)
413 COG2884 FtsE Predicted ATPase 99.9 7.3E-25 1.6E-29 201.7 8.6 128 425-555 2-149 (223)
414 TIGR00960 3a0501s02 Type II (G 99.9 3.2E-24 6.9E-29 209.6 12.6 128 425-555 2-150 (216)
415 cd03259 ABC_Carb_Solutes_like 99.9 2.6E-24 5.5E-29 209.8 11.6 128 425-555 1-142 (213)
416 cd03261 ABC_Org_Solvent_Resist 99.9 4.5E-24 9.8E-29 211.3 13.3 128 425-555 1-148 (235)
417 cd03265 ABC_DrrA DrrA is the A 99.9 3.4E-24 7.4E-29 210.0 12.2 128 425-555 1-143 (220)
418 PRK11650 ugpC glycerol-3-phosp 99.9 3.8E-24 8.3E-29 223.7 13.3 129 424-555 3-146 (356)
419 TIGR03265 PhnT2 putative 2-ami 99.9 5.7E-24 1.2E-28 222.2 14.3 129 424-555 4-146 (353)
420 PRK11432 fbpC ferric transport 99.9 5.1E-24 1.1E-28 222.2 13.9 131 422-555 4-148 (351)
421 COG1135 AbcC ABC-type metal io 99.9 2.4E-24 5.1E-29 212.4 10.4 128 425-555 2-153 (339)
422 cd03226 ABC_cobalt_CbiO_domain 99.9 3.5E-24 7.5E-29 207.7 10.9 128 426-555 1-138 (205)
423 cd03268 ABC_BcrA_bacitracin_re 99.9 7.1E-24 1.5E-28 205.9 13.0 128 425-555 1-138 (208)
424 cd03269 ABC_putative_ATPase Th 99.9 5.7E-24 1.2E-28 206.9 12.2 128 425-555 1-140 (210)
425 cd03293 ABC_NrtD_SsuB_transpor 99.9 7.3E-24 1.6E-28 207.7 12.8 128 425-555 1-143 (220)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 6.7E-24 1.4E-28 207.6 12.5 128 425-555 1-152 (218)
427 TIGR00630 uvra excinuclease AB 99.9 7.3E-23 1.6E-27 234.2 22.8 104 238-343 807-922 (924)
428 cd03235 ABC_Metallic_Cations A 99.9 4E-24 8.8E-29 208.4 10.6 129 426-555 1-144 (213)
429 cd03301 ABC_MalK_N The N-termi 99.9 8.1E-24 1.7E-28 206.2 12.6 128 425-555 1-142 (213)
430 PRK09452 potA putrescine/sperm 99.9 1.3E-23 2.7E-28 220.8 14.8 131 422-555 12-156 (375)
431 PRK11629 lolD lipoprotein tran 99.9 1.3E-23 2.8E-28 207.8 13.8 130 423-555 4-157 (233)
432 PRK11248 tauB taurine transpor 99.9 9.6E-24 2.1E-28 211.5 13.0 128 425-555 2-140 (255)
433 TIGR02673 FtsE cell division A 99.9 9.6E-24 2.1E-28 205.9 12.3 128 425-555 2-149 (214)
434 cd03231 ABC_CcmA_heme_exporter 99.9 1.4E-23 3E-28 202.9 13.3 128 425-555 1-137 (201)
435 PRK15079 oligopeptide ABC tran 99.9 9.9E-24 2.1E-28 218.6 13.0 134 422-555 6-173 (331)
436 PRK11831 putative ABC transpor 99.9 1.5E-23 3.3E-28 211.7 14.1 131 422-555 5-155 (269)
437 PRK13543 cytochrome c biogenes 99.9 1.9E-23 4.1E-28 203.9 14.2 133 420-555 7-149 (214)
438 PRK13538 cytochrome c biogenes 99.9 1.6E-23 3.4E-28 203.0 13.2 128 425-555 2-141 (204)
439 cd03266 ABC_NatA_sodium_export 99.9 1.5E-23 3.3E-28 205.1 13.0 128 425-555 2-148 (218)
440 TIGR02211 LolD_lipo_ex lipopro 99.9 1.4E-23 3E-28 205.7 12.6 129 424-555 1-153 (221)
441 cd03296 ABC_CysA_sulfate_impor 99.9 1.5E-23 3.3E-28 208.0 12.9 129 424-555 2-148 (239)
442 PRK11000 maltose/maltodextrin 99.9 1.5E-23 3.4E-28 220.4 13.5 129 424-555 3-145 (369)
443 cd03257 ABC_NikE_OppD_transpor 99.9 1.9E-23 4E-28 205.7 13.2 132 424-555 1-157 (228)
444 TIGR01288 nodI ATP-binding ABC 99.9 2.3E-23 4.9E-28 214.0 14.4 131 422-555 2-147 (303)
445 cd03219 ABC_Mj1267_LivG_branch 99.9 1.5E-23 3.2E-28 207.7 12.4 128 425-555 1-155 (236)
446 cd03276 ABC_SMC6_euk Eukaryoti 99.9 4.2E-23 9E-28 198.9 15.2 162 112-333 11-192 (198)
447 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.3E-23 4.9E-28 206.4 13.7 128 425-555 2-144 (236)
448 PRK11308 dppF dipeptide transp 99.9 1.7E-23 3.8E-28 216.5 13.4 134 422-555 3-166 (327)
449 PRK11607 potG putrescine trans 99.9 2.1E-23 4.5E-28 219.5 14.0 131 422-555 17-161 (377)
450 COG0410 LivF ABC-type branched 99.9 1.4E-23 3E-28 199.9 11.2 131 423-555 2-148 (237)
451 PRK10851 sulfate/thiosulfate t 99.9 1.8E-23 4E-28 218.3 13.3 129 424-555 2-148 (353)
452 TIGR01189 ccmA heme ABC export 99.9 2.4E-23 5.1E-28 200.8 13.0 128 425-555 1-139 (198)
453 cd03256 ABC_PhnC_transporter A 99.9 1.8E-23 4E-28 207.5 12.5 128 425-555 1-156 (241)
454 PRK10584 putative ABC transpor 99.9 2.6E-23 5.6E-28 204.8 13.4 130 423-555 5-158 (228)
455 PRK10247 putative ABC transpor 99.9 2.7E-23 5.8E-28 204.5 13.4 131 422-555 5-149 (225)
456 cd03262 ABC_HisP_GlnQ_permease 99.9 1.8E-23 3.9E-28 203.8 12.1 128 425-555 1-147 (213)
457 TIGR02315 ABC_phnC phosphonate 99.9 1.7E-23 3.7E-28 208.1 12.0 128 425-555 2-157 (243)
458 TIGR02314 ABC_MetN D-methionin 99.9 2.4E-23 5.3E-28 216.1 13.5 128 425-555 2-152 (343)
459 PRK13537 nodulation ABC transp 99.9 3.8E-23 8.2E-28 212.4 14.7 131 422-555 5-150 (306)
460 PRK13651 cobalt transporter AT 99.9 3E-23 6.5E-28 212.9 13.8 131 424-555 2-177 (305)
461 KOG0065 Pleiotropic drug resis 99.9 7.4E-24 1.6E-28 240.9 10.1 208 98-342 788-1017(1391)
462 cd03263 ABC_subfamily_A The AB 99.9 2.1E-23 4.5E-28 204.4 12.0 128 425-555 1-145 (220)
463 PRK11701 phnK phosphonate C-P 99.9 4.2E-23 9E-28 207.3 14.2 133 423-555 5-163 (258)
464 KOG2355 Predicted ABC-type tra 99.9 7.1E-23 1.5E-27 190.3 14.5 193 95-336 11-228 (291)
465 PRK10575 iron-hydroxamate tran 99.9 3.1E-23 6.7E-28 209.0 13.3 132 421-555 8-159 (265)
466 PRK10908 cell division protein 99.9 3E-23 6.5E-28 203.6 12.8 128 425-555 2-149 (222)
467 PRK13634 cbiO cobalt transport 99.9 2.4E-23 5.3E-28 212.4 12.6 130 425-555 3-157 (290)
468 PRK13540 cytochrome c biogenes 99.9 4.8E-23 1E-27 198.9 14.0 128 425-555 2-139 (200)
469 cd03292 ABC_FtsE_transporter F 99.9 2.9E-23 6.3E-28 202.4 12.4 128 425-555 1-148 (214)
470 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.7E-23 5.9E-28 206.6 12.3 129 425-555 1-147 (242)
471 PRK11124 artP arginine transpo 99.9 3.1E-23 6.7E-28 206.2 12.6 129 424-555 2-153 (242)
472 cd03225 ABC_cobalt_CbiO_domain 99.9 2.8E-23 6E-28 202.2 12.0 128 426-555 1-146 (211)
473 TIGR03258 PhnT 2-aminoethylpho 99.9 4.3E-23 9.4E-28 215.9 14.1 128 425-555 6-149 (362)
474 cd03258 ABC_MetN_methionine_tr 99.9 4.2E-23 9E-28 204.1 13.2 128 425-555 2-152 (233)
475 PRK13548 hmuV hemin importer A 99.9 5.2E-23 1.1E-27 206.6 14.0 129 424-555 2-146 (258)
476 cd03218 ABC_YhbG The ABC trans 99.9 3.6E-23 7.9E-28 204.3 12.7 128 425-555 1-145 (232)
477 PRK13631 cbiO cobalt transport 99.9 5.8E-23 1.3E-27 212.0 14.6 136 419-555 16-188 (320)
478 PRK13536 nodulation factor exp 99.9 5.7E-23 1.2E-27 213.5 14.4 132 421-555 38-184 (340)
479 PRK14250 phosphate ABC transpo 99.9 4.5E-23 9.8E-28 205.0 13.0 129 424-555 3-143 (241)
480 PRK13646 cbiO cobalt transport 99.9 3.4E-23 7.4E-28 211.0 12.4 131 424-555 2-157 (286)
481 PRK13637 cbiO cobalt transport 99.9 5.5E-23 1.2E-27 209.5 13.8 131 424-555 2-156 (287)
482 PRK13643 cbiO cobalt transport 99.9 4.2E-23 9.2E-28 210.5 13.0 130 425-555 2-156 (288)
483 cd03224 ABC_TM1139_LivF_branch 99.9 3.3E-23 7.2E-28 203.1 11.6 128 425-555 1-144 (222)
484 PRK13539 cytochrome c biogenes 99.9 6.5E-23 1.4E-27 199.1 13.5 129 424-555 2-139 (207)
485 PRK09493 glnQ glutamine ABC tr 99.9 4.9E-23 1.1E-27 204.5 12.9 128 425-555 2-148 (240)
486 cd03260 ABC_PstB_phosphate_tra 99.9 4.6E-23 9.9E-28 203.0 12.5 127 425-555 1-153 (227)
487 PRK15112 antimicrobial peptide 99.9 5.4E-23 1.2E-27 207.5 13.3 133 423-555 3-161 (267)
488 TIGR02323 CP_lyasePhnK phospho 99.9 6.4E-23 1.4E-27 205.3 13.6 133 423-555 2-160 (253)
489 PRK11300 livG leucine/isoleuci 99.9 5.9E-23 1.3E-27 205.8 13.3 131 422-555 3-165 (255)
490 COG1131 CcmA ABC-type multidru 99.9 4.6E-23 9.9E-28 210.1 12.6 129 424-555 4-148 (293)
491 PRK11153 metN DL-methionine tr 99.9 6.9E-23 1.5E-27 213.7 14.1 128 425-555 2-152 (343)
492 PRK13641 cbiO cobalt transport 99.9 6.5E-23 1.4E-27 209.0 13.6 131 424-555 2-157 (287)
493 TIGR03411 urea_trans_UrtD urea 99.9 6.1E-23 1.3E-27 204.0 13.1 129 424-555 2-155 (242)
494 TIGR03608 L_ocin_972_ABC putat 99.9 5.3E-23 1.1E-27 199.4 11.8 126 427-555 1-146 (206)
495 PRK11264 putative amino-acid A 99.9 6.6E-23 1.4E-27 204.8 12.9 129 424-555 3-156 (250)
496 COG4559 ABC-type hemin transpo 99.9 2.6E-23 5.5E-28 194.5 9.1 128 425-555 2-147 (259)
497 TIGR03522 GldA_ABC_ATP gliding 99.9 8.6E-23 1.9E-27 209.5 14.0 129 424-555 2-145 (301)
498 TIGR02769 nickel_nikE nickel i 99.9 6E-23 1.3E-27 207.0 12.6 132 424-555 2-162 (265)
499 TIGR03740 galliderm_ABC gallid 99.9 8E-23 1.7E-27 200.7 13.2 128 425-555 1-136 (223)
500 cd03264 ABC_drug_resistance_li 99.9 5.8E-23 1.3E-27 199.9 12.1 127 425-555 1-142 (211)
No 1
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.5e-86 Score=714.02 Aligned_cols=446 Identities=41% Similarity=0.679 Sum_probs=388.8
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
.+|+++||+++|+++++|+|+||+|.+|+++||||+||||||||||+|+|.+.|++|+|...+ +.+|+|++|++.....
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-GLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-CceEEEeCCCCCcCCC
Confidence 468999999999999999999999999999999999999999999999999999999999874 4789999999999888
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
.||.+.+...+..........+.+...+... .......+...+..++.|..+.++..+|..+|++.. ++
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~ 149 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADP---------DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DR 149 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cC
Confidence 8999999887766555555555444333211 112334455555667779999999999999999865 89
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
++.+||||||.||+||+||+.+||+|||||||||||.+++.||.++|+++..||||||||++|++.+|++|+.++.|++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 99999999999999999999999999999999999999999999999887669999999999999999999999999999
Q ss_pred eccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhhHHHHHHHHHHHHHhhhhcCccc-cccceee
Q 008750 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQ-RKQMKIR 413 (555)
Q Consensus 336 ~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~ 413 (555)
.|.|||+.|++++++..+.+.+.+++++++++++++++++..... .+.++.++.+++++++......++.. ..+..+.
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~ 309 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceee
Confidence 999999999999999999999999999999999999999876543 33467788888888875322233332 3334466
Q ss_pred ccCCC-CCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeE
Q 008750 414 FPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (555)
Q Consensus 414 ~~~~~-~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~ 491 (555)
|+... ..++.+++++|+++.|++ +.+++++||.|.+|++|||+||||+|||||||+|+|...|.+|.|.++ ..++++
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~ig 388 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIG 388 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEE
Confidence 66655 478999999999999966 589999999999999999999999999999999999999999999997 569999
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
||+|+.. .++++.|+.+++....+...+.++|.+|++|+|+++.+.+++..||||||.||.||
T Consensus 389 yf~Q~~~-~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La 451 (530)
T COG0488 389 YFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA 451 (530)
T ss_pred EEEehhh-hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH
Confidence 9999974 55588899999999887666889999999999999999999999999999999986
No 2
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-77 Score=664.96 Aligned_cols=441 Identities=30% Similarity=0.509 Sum_probs=349.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
+|+++||+++|+++++|+||||+|.+|+++||||+||||||||||+|+|+++|++|+|.+++. ..++|++|+... ...
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-WQLAWVNQETPA-LPQ 78 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEecCCCC-CCC
Confidence 489999999999999999999999999999999999999999999999999999999999864 469999997543 345
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
++.+++.............+.. ... ..+. ..+..+.......+.+..+.++..+|..+||.....+++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~----~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHD----ANE-RNDG-------HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHH----Hhc-cCCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 7766654322111010000000 000 0000 001111111122345667788999999999975567899
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEee
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
+.+|||||||||+||+||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|++|++|++..
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999989
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhhHHHHHHHHHHHHHhhhhcCccccccceeecc
Q 008750 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG-ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (555)
Q Consensus 337 ~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 415 (555)
|.|+|+.|...++.+...+...+++++++++++++++.++... ..+.++.++.++++++... ..+.......+.|+
T Consensus 227 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~---~~~~~~~~~~~~~~ 303 (638)
T PRK10636 227 YTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELI---APAHVDNPFHFSFR 303 (638)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcc---cccccCCceeEecC
Confidence 9999999999888777788888999999999999999874332 1223334455555554321 11111234456665
Q ss_pred CCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEec
Q 008750 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (555)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q 495 (555)
.+.+.++++|+++|+++.|+++.+|+++||+|.+||+++|+|||||||||||++|+|.++|++|+|.+++ .+.++|++|
T Consensus 304 ~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q 382 (638)
T PRK10636 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQ 382 (638)
T ss_pred CCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecC
Confidence 5555678899999999999988899999999999999999999999999999999999999999999963 467899999
Q ss_pred CCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++...++...|+.+++....+......++.+|+.|+|..+..++++..|||||||||+||
T Consensus 383 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La 442 (638)
T PRK10636 383 HQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442 (638)
T ss_pred cchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH
Confidence 754456677889888764333333457889999999987778999999999999999986
No 3
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.8e-75 Score=653.56 Aligned_cols=446 Identities=31% Similarity=0.526 Sum_probs=346.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
+|+++||+++|+++++|+||||+|.+|+++||||+||||||||||+|+|+++|++|+|.+++ ...++|++|.+......
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~-~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC-CCEEEEeccCCCCCCCC
Confidence 68999999999988999999999999999999999999999999999999999999999986 45689999976544456
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
++.+++................+...+.. ....+ .+..+..+.......+.+....++..+++.+||. .+++
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~ 153 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVET-DPSEK----NLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAA 153 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhcc-CchHH----HHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCc
Confidence 78777643321111111111111111100 00000 0111111111122234456678899999999996 3789
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEee
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
+.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|++|++|++..
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999988
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccC
Q 008750 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE 416 (555)
Q Consensus 337 ~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 416 (555)
|.|+|++|..+++.+.+.+...+++++++++++..++.+...+. ..+..++.+++++++... ...+.......+.++.
T Consensus 234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 311 (635)
T PRK11147 234 YPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKAR-RTRNEGRVRALKALRRER-SERREVMGTAKMQVEE 311 (635)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHhhhhh-ccccccCCceeEEeCC
Confidence 99999999999888777777788888888888888887622111 111233344444443211 1111112234556655
Q ss_pred CCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecC
Q 008750 417 RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496 (555)
Q Consensus 417 ~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~ 496 (555)
....++.+|+++|+++.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.+ +.++.++|++|+
T Consensus 312 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~ 390 (635)
T PRK11147 312 ASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQH 390 (635)
T ss_pred CCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCc
Confidence 4556788999999999998888999999999999999999999999999999999999999999999 567789999997
Q ss_pred CccCCCCCCCHHHHHHhhcccC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ ..++++.||.+++....... ....++.+|+.|+|..+..++++..|||||||||+||
T Consensus 391 ~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la 452 (635)
T PRK11147 391 R-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA 452 (635)
T ss_pred c-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHH
Confidence 5 45788899999997643211 1346889999999987778999999999999999986
No 4
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-72 Score=624.10 Aligned_cols=449 Identities=32% Similarity=0.491 Sum_probs=339.0
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
+++|+++||+++|+ ++++|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++ ...||||+|++.++
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQLD 82 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCCC
Confidence 45799999999998 78899999999999999999999999999999999999999999999874 35799999999887
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..||.+|+...+.........+..+..... .....+...++....+......++.++...++..+++.+|++ ..
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~ 157 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYA---EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP--PW 157 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc---cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC--cc
Confidence 8889999986542110000000000000000 000011112223333444444556667788899999999995 36
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
++++.+|||||||||+|||||+.+|++||||||||+||+.++.++.++|++.+.|||+||||++++..+||+|++|++|+
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 88999999999999999999999999999999999999999999999998887899999999999999999999999999
Q ss_pred EeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceee
Q 008750 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (555)
Q Consensus 334 ~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 413 (555)
+..|.|+|++|...++.....+...++++++++++..+++++..... .....+..++++++.... .+.......+.
T Consensus 238 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 313 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKAR-QAKSKARLARYEELLSEE---YQKRNETNEIF 313 (556)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhccc---ccccCCCceee
Confidence 87799999999887765555555556666666666665554421110 111111222222221110 01011112222
Q ss_pred ccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEE
Q 008750 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493 (555)
Q Consensus 414 ~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~ 493 (555)
++.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ ..+.++|+
T Consensus 314 ~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v 392 (556)
T PRK11819 314 IPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYV 392 (556)
T ss_pred cCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEE
Confidence 33322234678999999999988889999999999999999999999999999999999999999999995 45678999
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ ..++++.||.+++..... ......++.+|..+++..+..++++..|||||||||+||
T Consensus 393 ~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 393 DQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred eCch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 9985 356788899999975431 112345678999999975567999999999999999986
No 5
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-72 Score=620.48 Aligned_cols=448 Identities=31% Similarity=0.530 Sum_probs=333.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+|+|+|+++|++|+|.+++. ..|+|++|++.+++..
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-ERLGKLRQDQFAFEEF 79 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccCCcCCCC
Confidence 489999999999889999999999999999999999999999999999999999999999864 4699999998887889
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
||.+++..+.............+.........+. .........+..+..+..+.++.++++.+|+.....+++
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDG-------MKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchH-------HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 9999986432110000000000000000000000 001111111122334455677889999999975444678
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEee
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
+.+|||||||||+||+||+.+|+||||||||++||+.++.+|.++|++.+.|||+||||++++.++||+|++|++|++..
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 89999999999999999999999999999999999999999999998889999999999999999999999999999877
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhhHHHHHHHHHHHHHhhhhcCccccccceeecc
Q 008750 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (555)
Q Consensus 337 ~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 415 (555)
+.|+|++|...++........+++++++++++++.++.+..... ....+..+.++++++.... . .+.........++
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 310 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEE-V-KPSSRQNPFIRFE 310 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccc-c-CCccccCceeeCC
Confidence 89999999887765555556666677777776666655432111 1111122222232211000 0 0000000111222
Q ss_pred CCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEec
Q 008750 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (555)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q 495 (555)
.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 311 ~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q 389 (530)
T PRK15064 311 QDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQ 389 (530)
T ss_pred CCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcc
Confidence 22223467899999999998878999999999999999999999999999999999999999999999863 46899999
Q ss_pred CCccCCCCCCCHHHHHHhhc-ccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++...++...|+.+++.... .......+..+|..+++..+..++++..|||||||||+||
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 450 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG 450 (530)
T ss_pred cccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence 86434666789999986432 1223456889999999965678999999999999999986
No 6
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=5.5e-74 Score=594.15 Aligned_cols=446 Identities=39% Similarity=0.639 Sum_probs=390.8
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
+....+.++|+++.|.+..+++|++|++.+|+++||||+|||||||+|++|+|-..|..-++ .+..+.++...
T Consensus 71 ~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-------d~y~ls~e~~p 143 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-------DFYLLSREIEP 143 (614)
T ss_pred cccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-------chhhhcccCCC
Confidence 45567999999999999999999999999999999999999999999999999999854333 34455565444
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
....+|...++....+...+....+.+...++. ...++++.++.+...++.+..+.++..+|..+|+...+
T Consensus 144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~---------~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDD---------KEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc---------hhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 333455555545554444444444444433222 12345667777888899999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCc-eEEEEecCHHHHHhhcceeEEecC
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV-PMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~-tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
.++.+.+||||||+|++|||+|..+|++|||||||||||++++.||.++|.++.. ++|++||+.+|++.+|++|+.++.
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 9999999999999999999999999999999999999999999999999999888 899999999999999999999999
Q ss_pred CeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CchhhHHHHHHHHHHHHHhhhhcCcccccc
Q 008750 332 GVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG--ANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409 (555)
Q Consensus 332 G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 409 (555)
++...|.|||++|...+.+....|..+|+++++++...++.+.+.+.+ ...+++.+.++.+++++.....+++...+.
T Consensus 295 kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~ 374 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKV 374 (614)
T ss_pred cceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCce
Confidence 999999999999999999999999999999999999999999998876 445678888899999988888888888899
Q ss_pred ceeeccCCCCCCCceEEEEeeeEEcCCc-cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 410 MKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~~l~~~y~~~-~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
+.|.|+..+..+.+++.+.|++|.|++. .++++++|-|..+++||+|||||||||||||+|+|.+.|..|.|..+.+ .
T Consensus 375 l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-~ 453 (614)
T KOG0927|consen 375 LSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-N 453 (614)
T ss_pred EEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-c
Confidence 9999988777788999999999999865 6999999999999999999999999999999999999999999988754 4
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhccc-CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+.+||.||..+.++.++++.+++....++ +..++++.+|++|||.++....++.+||+|||.||++|
T Consensus 454 ~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa 521 (614)
T KOG0927|consen 454 KLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFA 521 (614)
T ss_pred cchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHH
Confidence 55699999999999999999999998885 77789999999999999999999999999999999886
No 7
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.6e-72 Score=616.96 Aligned_cols=448 Identities=32% Similarity=0.504 Sum_probs=335.3
Q ss_pred ccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 96 ~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++ ...|||++|++.+++
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEeccCCCCC
Confidence 4699999999997 77899999999999999999999999999999999999999999999875 357999999998878
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+|+..++.........+......... .+.+ ..........+...++.++.++...++.++++.+|++ ..+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~ 156 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAE--PDAD-MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWD 156 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc--Cchh-hHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--ccc
Confidence 8999999865432100000000000000000 0000 0001112223334445566667778899999999995 258
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
+++.+|||||||||+|||||+.+|++||||||||+||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|++
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 88999999999999999999999999999999999999999999999988878999999999999999999999999998
Q ss_pred eeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeec
Q 008750 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (555)
Q Consensus 335 ~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 414 (555)
..+.|+|++|...++...+.+...+++.++++.+...++.+..... ..+.....++.+++.... .+......++.+
T Consensus 237 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 312 (552)
T TIGR03719 237 IPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR-QAKSKARLARYEELLSQE---FQKRNETAEIYI 312 (552)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhhhc---ccccCCCceeec
Confidence 7899999999987765555555556666666665555554311110 001111112222221110 010111112223
Q ss_pred cCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEe
Q 008750 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE 494 (555)
Q Consensus 415 ~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~ 494 (555)
+.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ .++.++|++
T Consensus 313 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~ 391 (552)
T TIGR03719 313 PPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVD 391 (552)
T ss_pred CCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEe
Confidence 3222235678999999999988889999999999999999999999999999999999999999999995 456789999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++ ..+++..||.+++..... . .....++.+|..+++.....++++..|||||||||+||
T Consensus 392 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la 455 (552)
T TIGR03719 392 QSR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA 455 (552)
T ss_pred CCc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 985 346678899999976432 1 11334678899999965567999999999999999986
No 8
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.6e-70 Score=611.15 Aligned_cols=446 Identities=29% Similarity=0.478 Sum_probs=333.4
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC---CCCceEEEEcCCCceEEEEecc
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIKAKSNMKIAFLSQE 169 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~---~p~~G~I~~~g~~~~ig~v~Q~ 169 (555)
....+|+++||+|+|+++++|+|+||+|.+|+++||||+||||||||||+|+|.. .|++ ..|+|++|+
T Consensus 173 ~~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~---------g~I~~~~Q~ 243 (718)
T PLN03073 173 PAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKN---------CQILHVEQE 243 (718)
T ss_pred CCceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCC---------CEEEEEecc
Confidence 3456799999999999888999999999999999999999999999999999974 2333 356788887
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHH---Hh------------hccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA---LE------------SAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
... ...|+.+.+................+... +. ....+.+ .+..+...+...+...+.|.
T Consensus 244 ~~g-~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~~ 319 (718)
T PLN03073 244 VVG-DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKD---AVSQRLEEIYKRLELIDAYT 319 (718)
T ss_pred CCC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchH---HHHHHHHHHHHHHHhcCcch
Confidence 542 45577666543221111111100000000 00 0000111 12233444555666677889
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEec
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSH 314 (555)
.+.++..+|..+||.....++++.+|||||||||+||+||+.+|++|||||||+|||+.++.||.++|++++.|||||||
T Consensus 320 ~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsH 399 (718)
T PLN03073 320 AEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSH 399 (718)
T ss_pred HHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEC
Confidence 99999999999999766678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhhHHHHHHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLE 393 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 393 (555)
|++++..+||+|++|++|++..|.|+|+.|...++.....+...++.++++++++++++.++.... .+..+.++.++++
T Consensus 400 d~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~ 479 (718)
T PLN03073 400 AREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALD 479 (718)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHH
Confidence 999999999999999999998899999999998888888888888888899888888877654221 1112222233333
Q ss_pred HHHHhhhhcCccccccceeeccCCC-CCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 394 RLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
++... ..+.......+.++... ..++++|+++|+++.|++ +.+|+++||+|.+||+++|+|||||||||||++|+
T Consensus 480 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~ 556 (718)
T PLN03073 480 RLGHV---DAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIS 556 (718)
T ss_pred HHhhh---hccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 33211 11111112233443321 234578999999999964 56999999999999999999999999999999999
Q ss_pred CCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhc
Q 008750 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVN 551 (555)
Q Consensus 472 G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~R 551 (555)
|+++|++|+|.+++ ...++|++|++...+....++...+....+......++.+|..|++..+..++++..||||||||
T Consensus 557 Gll~p~~G~I~~~~-~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqR 635 (718)
T PLN03073 557 GELQPSSGTVFRSA-KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 635 (718)
T ss_pred CCCCCCCceEEECC-ceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHH
Confidence 99999999999874 46789999986333333222222222222233456789999999998667899999999999999
Q ss_pred hhcC
Q 008750 552 QTLV 555 (555)
Q Consensus 552 v~La 555 (555)
|+||
T Consensus 636 vaLA 639 (718)
T PLN03073 636 VAFA 639 (718)
T ss_pred HHHH
Confidence 9986
No 9
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2e-67 Score=558.12 Aligned_cols=379 Identities=23% Similarity=0.374 Sum_probs=295.9
Q ss_pred ccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC----ceEEEEcCCC-------
Q 008750 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNVIKAKSN------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~----~G~I~~~g~~------- 160 (555)
++|+++||++.|.. .++++||||+|.+||++||||+|||||||++++|.|++++. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 47999999999953 25999999999999999999999999999999999999887 8999999864
Q ss_pred -------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 -------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..|+|+||++. +.+-+||.+-+...+.- .....
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~--------------------------------------h~~~~ 125 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL--------------------------------------HGKGS 125 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHH--------------------------------------hcccc
Confidence 26999999984 33445665544322110 00112
Q ss_pred cccHHHHHHHHhhhcCCCcccc-CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCC
Q 008750 232 LDTLDAKVSKLMPELGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~-~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~ 306 (555)
..+..+++.++|+.+||++... +++|++|||||||||.||+||+.+|++||+||||++||+.+...+.++|+ +.|
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 3456778999999999986554 47999999999999999999999999999999999999999998888774 479
Q ss_pred ceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHH
Q 008750 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (555)
Q Consensus 307 ~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (555)
+++|+||||+..+.++||||++|++|+++. .|..++.+..- .+.|. +.++
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE-~G~~~~i~~~p-------~hpYT---------~~Ll------------- 255 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEIVE-TGPTEEILSNP-------QHPYT---------RGLL------------- 255 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEEEE-ecCHHHHHhcc-------CCccc---------HHHH-------------
Confidence 999999999999999999999999999754 45544433210 00000 0000
Q ss_pred HHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-----------ccceeceEEEEecCCEEEE
Q 008750 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEKTAI 455 (555)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~ll~~vsl~i~~Ge~iaI 455 (555)
.. .......+...... .....++++++++|+++.|.. ..++++|||+|++||++||
T Consensus 256 ------~a------~p~~~~~~~~~~~~-~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lgl 322 (539)
T COG1123 256 ------AA------VPRLGDEKIIRLPR-RGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGL 322 (539)
T ss_pred ------hh------CCCccccccccccc-ccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEE
Confidence 00 00000000000000 001126789999999999972 2479999999999999999
Q ss_pred ECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeEEEecCCccCCCCCCCHHHHHHhhcc---c---
Q 008750 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNYFEQNQAEALDLDKTVLETVAEAAE---D--- 517 (555)
Q Consensus 456 ~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~--- 517 (555)
+|++|||||||.|+|+|+.+|++|.|.+.|.++ .+.+++|||...|+|..||.+.+.+... .
T Consensus 323 VGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~ 402 (539)
T COG1123 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402 (539)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccch
Confidence 999999999999999999999999999988652 3568899999999999999999987632 1
Q ss_pred -CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 518 -WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 518 -~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
...+.+..+|...+++++.++++|++||||||||++||
T Consensus 403 ~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA 441 (539)
T COG1123 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA 441 (539)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence 11234778899999998899999999999999999986
No 10
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-67 Score=583.11 Aligned_cols=400 Identities=18% Similarity=0.304 Sum_probs=297.3
Q ss_pred CCccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC----------
Q 008750 94 ISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS---------- 159 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~---------- 159 (555)
.+++|+++||+++|++ .++|+||||+|.+||++||||+||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 4567999999999962 47999999999999999999999999999999999999999999998762
Q ss_pred --------------CceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 008750 160 --------------NMKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223 (555)
Q Consensus 160 --------------~~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (555)
...||||+|++ .+++.+||.+|+...... .
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~---------------~------------------- 134 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRL---------------H------------------- 134 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHH---------------h-------------------
Confidence 02599999998 466778999998643210 0
Q ss_pred HHHHHhcCcccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH
Q 008750 224 QRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301 (555)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~ 301 (555)
.....++...++.++++.+||+. ...++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.++
T Consensus 135 ----~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l 210 (623)
T PRK10261 135 ----QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210 (623)
T ss_pred ----cCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH
Confidence 00112234567888999999963 356899999999999999999999999999999999999999998888887
Q ss_pred HcC----CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008750 302 LGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLG 377 (555)
Q Consensus 302 l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (555)
+++ .|.|||+||||++++.++||||++|++|+++ ..|++.++..... ..|.. . +...+....
T Consensus 211 l~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~-~~g~~~~~~~~~~-------~~~~~---~---l~~~~~~~~ 276 (623)
T PRK10261 211 IKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV-ETGSVEQIFHAPQ-------HPYTR---A---LLAAVPQLG 276 (623)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-ccCCHHHhhcCCC-------Chhhh---h---hhhccCccc
Confidence 642 4899999999999999999999999999975 5788877643110 00000 0 000000000
Q ss_pred cCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-----------ccceeceEEE
Q 008750 378 AGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLT 446 (555)
Q Consensus 378 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~ll~~vsl~ 446 (555)
... ++.. ....+... ...+..... ..++.....++++|+++|+++.|+. ..+|+++||+
T Consensus 277 ~~~--~~~~--~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~ 346 (623)
T PRK10261 277 AMK--GLDY--PRRFPLIS----LEHPAKQEP--PIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFD 346 (623)
T ss_pred ccc--cccC--Cccccccc----cccccccCc--ccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeE
Confidence 000 0000 00000000 000000000 0000111124578999999999961 3689999999
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eeEEEecCCccCCCCCCCHHHHHHh
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAE 513 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (555)
|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|++...+++..||.+++..
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~ 426 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIME 426 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999987543 3689999875568888999999875
Q ss_pred hcc--cC-----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 514 AAE--DW-----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 514 ~~~--~~-----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
... .. ....+..+|..+++..+..+++++.|||||||||+||
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iA 475 (623)
T PRK10261 427 PLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIA 475 (623)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 321 11 1245778999999976678999999999999999986
No 11
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-67 Score=572.60 Aligned_cols=377 Identities=21% Similarity=0.340 Sum_probs=292.2
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++|++++|+++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 56999999999998889999999999999999999999999999999999999999999998743 2499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+......... .... ......+...++.++++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-----------~~~~---------------------~~~~~~~~~~~~~~~l~ 131 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKK-----------VCGV---------------------NIIDWREMRVRAAMMLL 131 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccc-----------cccc---------------------cccCHHHHHHHHHHHHH
Confidence 999999888889999998532100000 0000 00001123456788899
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++..
T Consensus 132 ~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 132 RVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred HcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 46789999999999999999999999999999999999999999999988874 358999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (555)
+||+|++|++|++ .+.|+++++.... .+..+.. .... .. .
T Consensus 211 ~~d~v~~l~~G~i-~~~g~~~~~~~~~-----------------------~~~~~~~-~~~~---------~~------~ 250 (510)
T PRK09700 211 ICDRYTVMKDGSS-VCSGMVSDVSNDD-----------------------IVRLMVG-RELQ---------NR------F 250 (510)
T ss_pred hCCEEEEEECCEE-eeecchhhCCHHH-----------------------HHHHhcC-CCcc---------cc------c
Confidence 9999999999997 5778776653210 0000000 0000 00 0
Q ss_pred cCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
...... .....+++.|+++|+++.|. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 251 ~~~~~~--------~~~~~~~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 320 (510)
T PRK09700 251 NAMKEN--------VSNLAHETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320 (510)
T ss_pred cccccc--------cccCCCCcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 000000 00011345799999999764 38999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhcc----------c-----CcHHHHHHHHhhCCCCh
Q 008750 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----------D-----WRIDDIKGLLGRCNFKA 534 (555)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----------~-----~~~~~~~~~L~~~~~~~ 534 (555)
.++|.++ .++|++|++. ..+++..||.+++..... . .....+..+|..+++..
T Consensus 321 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 400 (510)
T PRK09700 321 RLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400 (510)
T ss_pred EECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC
Confidence 9987543 3689999742 356778999999864311 0 01134678999999964
Q ss_pred hhhccccCCCChhHHhchhcC
Q 008750 535 DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 535 ~~~~~~~~~LSGGek~Rv~La 555 (555)
+..++++..|||||||||+||
T Consensus 401 ~~~~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 401 HSVNQNITELSGGNQQKVLIS 421 (510)
T ss_pred CCccCccccCChHHHHHHHHH
Confidence 678999999999999999986
No 12
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-66 Score=570.45 Aligned_cols=371 Identities=22% Similarity=0.311 Sum_probs=289.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCCC-----------ce
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MK 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~g~~-----------~~ 162 (555)
++|+++||+++|+++++|+||||+|.+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+ ..
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 469999999999988899999999999999999999999999999999999996 89999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++.+||.+|+....... .. ...+......++.++
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~---------------------~~~~~~~~~~~~~~~ 127 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEIT---------------PG---------------------GIMDYDAMYLRAQKL 127 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhccccc---------------cc---------------------CCcCHHHHHHHHHHH
Confidence 999999998888899999985421000 00 000011223467788
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|.+ .|.|||+||||++++
T Consensus 128 l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 128 LAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred HHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 9999996 467899999999999999999999999999999999999999999999988743 588999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhh
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 399 (555)
..+||+|++|++|+++ +.|+..++.... .+..+.. ..
T Consensus 207 ~~~~d~v~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~~-~~------------------ 243 (506)
T PRK13549 207 KAISDTICVIRDGRHI-GTRPAAGMTEDD-----------------------IITMMVG-RE------------------ 243 (506)
T ss_pred HHhcCEEEEEECCEEe-eecccccCCHHH-----------------------HHHHhhC-cC------------------
Confidence 9999999999999874 555544331100 0000000 00
Q ss_pred hhcCccccccceeeccCCCCCCCceEEEEeeeEEcC---CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-
Q 008750 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK- 475 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~---~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~- 475 (555)
.....+. .. ...+++.|+++|+++.|+ ++.+++++||+|++||+++|+||||||||||+|+|+|+++
T Consensus 244 -~~~~~~~-------~~-~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 244 -LTALYPR-------EP-HTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred -ccccccc-------cc-cCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 0000000 00 012356799999999994 4569999999999999999999999999999999999999
Q ss_pred CCceEEEECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhc----c-----cC--cHHHHHHHHhhCCC
Q 008750 476 PRGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAA----E-----DW--RIDDIKGLLGRCNF 532 (555)
Q Consensus 476 p~~G~v~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~----~-----~~--~~~~~~~~L~~~~~ 532 (555)
|++|+|.++|.++ .++|++|++. ..+++..||.+++.... . .. ....+..+|..+++
T Consensus 315 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 315 RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 5999999987543 2689999853 24667789999986421 0 00 12357889999999
Q ss_pred ChhhhccccCCCChhHHhchhcC
Q 008750 533 KADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 533 ~~~~~~~~~~~LSGGek~Rv~La 555 (555)
..+..++++.+|||||||||+||
T Consensus 395 ~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 395 KTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred cCCCcccccccCCHHHHHHHHHH
Confidence 64568999999999999999986
No 13
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.7e-66 Score=566.91 Aligned_cols=370 Identities=25% Similarity=0.359 Sum_probs=289.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ce
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MK 162 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ 162 (555)
..++|+++||+++|+++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4457999999999998889999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+||++|++.+++..||.+|+...... ....+.++.++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~-------------------------------------------~~~~~~~~~~~ 124 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK-------------------------------------------RQASMQKMKQL 124 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc-------------------------------------------chHHHHHHHHH
Confidence 99999999888889999997532100 01123456778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++
T Consensus 125 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 203 (510)
T PRK15439 125 LAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI 203 (510)
T ss_pred HHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8899996 456899999999999999999999999999999999999999999999988753 589999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhh
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 399 (555)
..+||+|++|++|++. +.|+++++...... +.+........ +...
T Consensus 204 ~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~---- 248 (510)
T PRK15439 204 RQLADRISVMRDGTIA-LSGKTADLSTDDII-----------------------QAITPAAREKS-------LSAS---- 248 (510)
T ss_pred HHhCCEEEEEECCEEE-EecChHHcCHHHHH-----------------------HHHhCcccccc-------cccc----
Confidence 9999999999999974 67888776432100 00000000000 0000
Q ss_pred hhcCccccccceeeccC---CCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 400 QIEKPFQRKQMKIRFPE---RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
.. ..+.++. ....++++|+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|
T Consensus 249 --~~------~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p 315 (510)
T PRK15439 249 --QK------LWLELPGNRRQQAAGAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315 (510)
T ss_pred --cc------ccccccccccccCCCCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 00 0000110 0112456899999984 259999999999999999999999999999999999999
Q ss_pred CceEEEECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhh----cc---cC--cHHHHHHHHhhCCCChh
Q 008750 477 RGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEA----AE---DW--RIDDIKGLLGRCNFKAD 535 (555)
Q Consensus 477 ~~G~v~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~----~~---~~--~~~~~~~~L~~~~~~~~ 535 (555)
++|+|.+++.++ .++|++|++. ..+++..|+.+++... .. .. ....+..+|..+++..+
T Consensus 316 ~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 395 (510)
T PRK15439 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFN 395 (510)
T ss_pred CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCC
Confidence 999999987543 3689999742 3466778999998531 00 01 12347789999999645
Q ss_pred hhccccCCCChhHHhchhcC
Q 008750 536 MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 536 ~~~~~~~~LSGGek~Rv~La 555 (555)
..++++..|||||||||+||
T Consensus 396 ~~~~~~~~LSgG~kqrl~la 415 (510)
T PRK15439 396 HAEQAARTLSGGNQQKVLIA 415 (510)
T ss_pred CccCccccCCcHHHHHHHHH
Confidence 68999999999999999986
No 14
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.9e-66 Score=567.58 Aligned_cols=371 Identities=20% Similarity=0.344 Sum_probs=286.8
Q ss_pred ccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC------
Q 008750 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN------ 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~------ 160 (555)
++|+++||+++|++ +++|+||||+|.+||++||+|+||||||||+|+|+|+++| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 46999999999963 5799999999999999999999999999999999999986 79999998743
Q ss_pred --------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc
Q 008750 161 --------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (555)
Q Consensus 161 --------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
..|||++|++. +.+..|+.+++..... .. ...
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~---------------~~-----------------------~~~ 125 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS---------------LH-----------------------RGM 125 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHH---------------Hh-----------------------cCC
Confidence 25999999975 4455688877642110 00 001
Q ss_pred CcccHHHHHHHHhhhcCCCcc--ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----
Q 008750 231 NLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (555)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---- 304 (555)
..+....++.++++.+|+... ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 112335667888999999642 35889999999999999999999999999999999999999999999988854
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhh
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR 384 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (555)
.|.|||+||||++++..+||||++|++|++. +.|...++...... .+ .+....
T Consensus 206 ~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~~~~~-------~~---------~~~~~~---------- 258 (529)
T PRK15134 206 LNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRAATLFSAPTH-------PY---------TQKLLN---------- 258 (529)
T ss_pred cCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCHHHHhhCCCC-------HH---------HHHHHH----------
Confidence 4899999999999999999999999999975 45655443221000 00 000000
Q ss_pred HHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcC-----------CccceeceEEEEecCCEE
Q 008750 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----------DRLLFNRANLTIERGEKT 453 (555)
Q Consensus 385 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~-----------~~~ll~~vsl~i~~Ge~i 453 (555)
......+. .. ...++++|+++|+++.|+ ++.+|+++||+|++||++
T Consensus 259 -------------~~~~~~~~---------~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~ 315 (529)
T PRK15134 259 -------------SEPSGDPV---------PL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETL 315 (529)
T ss_pred -------------hCcccccc---------cc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEE
Confidence 00000000 00 112456799999999995 356999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eeEEEecCCccCCCCCCCHHHHHHhhcc----
Q 008750 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAEAAE---- 516 (555)
Q Consensus 454 aI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---- 516 (555)
+|+||||||||||+++|+|++ |++|+|+++|.++ .++|++|++...+.+..||.+++.....
T Consensus 316 ~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~ 394 (529)
T PRK15134 316 GLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP 394 (529)
T ss_pred EEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc
Confidence 999999999999999999998 4899999987543 2689999863357778899999975321
Q ss_pred cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 517 DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 517 ~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.. ....+..+|..+++..+..++++..|||||||||+||
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 437 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIA 437 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHH
Confidence 01 1245778999999975568999999999999999986
No 15
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.8e-65 Score=563.32 Aligned_cols=358 Identities=26% Similarity=0.420 Sum_probs=284.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEc------------------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKA------------------ 157 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~------------------ 157 (555)
|+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999998888999999999999999999999999999999999997 7999999986
Q ss_pred -----CC--------------------CceEEEEecc-cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHH
Q 008750 158 -----KS--------------------NMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211 (555)
Q Consensus 158 -----g~--------------------~~~ig~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (555)
|. ...++|++|+ +.+++..|+.+|+...+..
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----------------------- 137 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE----------------------- 137 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-----------------------
Confidence 11 1248999997 5666778999988532100
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCC
Q 008750 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291 (555)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD 291 (555)
......+...++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 138 ----------------~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD 200 (520)
T TIGR03269 138 ----------------IGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200 (520)
T ss_pred ----------------cCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCC
Confidence 0011122345678889999996 45688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008750 292 LDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367 (555)
Q Consensus 292 ~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (555)
+.++.++.++|+ +.|.|||+||||++++.++||+|++|++|++. +.|++.++..... ..
T Consensus 201 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~--------------~~-- 263 (520)
T TIGR03269 201 PQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK-EEGTPDEVVAVFM--------------EG-- 263 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe-eecCHHHHHHHHH--------------hh--
Confidence 999999877764 35899999999999999999999999999874 5788876643100 00
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-----ccceec
Q 008750 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----RLLFNR 442 (555)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----~~ll~~ 442 (555)
.. .. ..+ .....++++|+++|+++.|++ +.+|++
T Consensus 264 -----~~-------------------~~------~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~ 302 (520)
T TIGR03269 264 -----VS-------------------EV------EKE-----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDN 302 (520)
T ss_pred -----ch-------------------hh------ccc-----------cccCCCCceEEEeccEEEeccCCCCCceEEee
Confidence 00 00 000 000113457999999999952 469999
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC-Cce----------------eeeEEEecCCccCCCCCC
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-EHN----------------VLPNYFEQNQAEALDLDK 505 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~-~~~----------------~~~~y~~Q~~~~~l~~~~ 505 (555)
+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ +.. -.++|++|++ .+.+..
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~--~l~~~~ 380 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY--DLYPHR 380 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc--ccCCCC
Confidence 999999999999999999999999999999999999999994 311 1368999985 366788
Q ss_pred CHHHHHHhhcc-cC----cHHHHHHHHhhCCCCh----hhhccccCCCChhHHhchhcC
Q 008750 506 TVLETVAEAAE-DW----RIDDIKGLLGRCNFKA----DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 506 tv~e~l~~~~~-~~----~~~~~~~~L~~~~~~~----~~~~~~~~~LSGGek~Rv~La 555 (555)
||.+++..... .. ....+..+|..+++.. +.+++++..|||||||||+||
T Consensus 381 tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~la 439 (520)
T TIGR03269 381 TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA 439 (520)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHH
Confidence 99999975321 11 1235778999999964 257899999999999999986
No 16
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.3e-66 Score=563.00 Aligned_cols=367 Identities=24% Similarity=0.369 Sum_probs=285.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999988889999999999999999999999999999999999999999999998743 2499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++.+||.+|+..+.... ... ...+......++.++++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~~--------------------~~~~~~~~~~~~~~~l~ 127 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFV---------------NRF--------------------GRIDWKKMYAEADKLLA 127 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccc---------------ccc--------------------CccCHHHHHHHHHHHHH
Confidence 9999998888899999985421000 000 00011122456778899
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.+.|||+||||++++..
T Consensus 128 ~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 128 RLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE 206 (501)
T ss_pred HcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99996 45689999999999999999999999999999999999999999999987764 358899999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (555)
+||+|++|++|++. ..|...++... +....+.. .. .
T Consensus 207 ~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~~-------------------~ 242 (501)
T PRK10762 207 ICDDVTVFRDGQFI-AEREVADLTED-----------------------SLIEMMVG-RK-------------------L 242 (501)
T ss_pred hCCEEEEEeCCEEE-EecCcCcCCHH-----------------------HHHHHhcC-CC-------------------c
Confidence 99999999999874 34543332110 00000000 00 0
Q ss_pred cCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
..+.+. . + ...++++++++|+++ .+++++||+|.+||+++|+||||||||||+++|+|+.+|++|+|
T Consensus 243 ~~~~~~----~--~--~~~~~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I 309 (501)
T PRK10762 243 EDQYPR----L--D--KAPGEVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309 (501)
T ss_pred cccccc----c--c--cCCCCcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence 000000 0 0 012346899999985 36999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhcc----c----C----cHHHHHHHHhhCCCChhhh
Q 008750 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----D----W----RIDDIKGLLGRCNFKADML 537 (555)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----~----~----~~~~~~~~L~~~~~~~~~~ 537 (555)
.++|.++ .++|++|++. ..+.+..||.+++..... . . ....+..+|..+++..+..
T Consensus 310 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 389 (501)
T PRK10762 310 TLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM 389 (501)
T ss_pred EECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc
Confidence 9987543 2689999853 246678899999864210 0 1 1235788999999954567
Q ss_pred ccccCCCChhHHhchhcC
Q 008750 538 DRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 538 ~~~~~~LSGGek~Rv~La 555 (555)
++++..|||||||||+||
T Consensus 390 ~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred cCchhhCCHHHHHHHHHH
Confidence 999999999999999986
No 17
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-65 Score=562.65 Aligned_cols=372 Identities=23% Similarity=0.314 Sum_probs=286.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCCC-----------ceE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~g~~-----------~~i 163 (555)
+|+++||+++|+++++|+||||+|.+||++||+|+||||||||+++|+|+++| ++|+|.++|.+ ..+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 37899999999888899999999999999999999999999999999999987 79999998743 259
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..||.+|+....... .... .........++.+++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~--------------~~~~---------------------~~~~~~~~~~~~~~l 125 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEIT--------------LPGG---------------------RMAYNAMYLRAKNLL 125 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhcccc--------------cccc---------------------ccCHHHHHHHHHHHH
Confidence 99999998878899999975321000 0000 000112345677889
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++.
T Consensus 126 ~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~ 205 (500)
T TIGR02633 126 RELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVK 205 (500)
T ss_pred HHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHH
Confidence 999996444467899999999999999999999999999999999999999999998864 45889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhh
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQ 400 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 400 (555)
.+||+|++|++|++. +.|...++.... .+..+.. ..
T Consensus 206 ~~~d~i~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~~-~~------------------- 241 (500)
T TIGR02633 206 AVCDTICVIRDGQHV-ATKDMSTMSEDD-----------------------IITMMVG-RE------------------- 241 (500)
T ss_pred HhCCEEEEEeCCeEe-eecCcccCCHHH-----------------------HHHHHhC-cc-------------------
Confidence 999999999999874 334332211000 0000000 00
Q ss_pred hcCccccccceeeccCCCCCCCceEEEEeeeEEc---CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC-
Q 008750 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP- 476 (555)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y---~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p- 476 (555)
.....+. .....++.+|+++|+++.| +++.+++++||+|++||+++|+||||||||||+++|+|+++|
T Consensus 242 ~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 313 (500)
T TIGR02633 242 ITSLYPH--------EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK 313 (500)
T ss_pred ccccccc--------cccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC
Confidence 0000000 0001234579999999999 345699999999999999999999999999999999999995
Q ss_pred CceEEEECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhc----c---cCc----HHHHHHHHhhCCCC
Q 008750 477 RGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAA----E---DWR----IDDIKGLLGRCNFK 533 (555)
Q Consensus 477 ~~G~v~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~----~---~~~----~~~~~~~L~~~~~~ 533 (555)
++|+|.++|.++ .++|++|++. ..+.+..||.+++.... . ... ...+..+|.++++.
T Consensus 314 ~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 314 FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred CCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 899999987543 2689999852 24667889999986421 0 011 23578899999996
Q ss_pred hhhhccccCCCChhHHhchhcC
Q 008750 534 ADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 534 ~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+..++++..|||||||||+||
T Consensus 394 ~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 394 TASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCccCccccCCHHHHHHHHHH
Confidence 5567999999999999999986
No 18
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-65 Score=561.06 Aligned_cols=368 Identities=22% Similarity=0.358 Sum_probs=285.0
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++||+++|+++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999988889999999999999999999999999999999999999999999998743 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+........ .. ....+....++.++++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~-------------~~-----------------------~~~~~~~~~~~~~~l~ 126 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHK-------------GG-----------------------IVNRRLLNYEAREQLE 126 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccc-------------cC-----------------------CCCHHHHHHHHHHHHH
Confidence 99999988888999999854210000 00 0011223456778899
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.|.|||+||||++++..
T Consensus 127 ~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 127 HLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 45688999999999999999999999999999999999999999999998875 358999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (555)
+||+|++|++|++.. . ++.+...... +....+.. .. .
T Consensus 206 ~~d~i~~l~~G~i~~-~--~~~~~~~~~~--------------------~~~~~~~~-~~-------------------~ 242 (501)
T PRK11288 206 LCDAITVFKDGRYVA-T--FDDMAQVDRD--------------------QLVQAMVG-RE-------------------I 242 (501)
T ss_pred hCCEEEEEECCEEEe-e--cCccccCCHH--------------------HHHHHhcC-CC-------------------c
Confidence 999999999998752 2 2211000000 00000000 00 0
Q ss_pred cCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
.... .. .+...++++++++++++. .+++++||+|++||+++|+||||||||||+++|+|+++|++|.|
T Consensus 243 ~~~~-------~~-~~~~~~~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i 310 (501)
T PRK11288 243 GDIY-------GY-RPRPLGEVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310 (501)
T ss_pred cccc-------cc-cccCCCCcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE
Confidence 0000 00 001123457899999842 48999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhcc------c------CcHHHHHHHHhhCCCChhhh
Q 008750 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE------D------WRIDDIKGLLGRCNFKADML 537 (555)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~------~------~~~~~~~~~L~~~~~~~~~~ 537 (555)
+++|+++ .++|++|++. ..+.+..|+.+++..... . .....+..+|..+++..+..
T Consensus 311 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 390 (501)
T PRK11288 311 YLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390 (501)
T ss_pred EECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc
Confidence 9987543 2579999853 246677899999864211 0 11235788999999965678
Q ss_pred ccccCCCChhHHhchhcC
Q 008750 538 DRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 538 ~~~~~~LSGGek~Rv~La 555 (555)
++++..|||||||||+||
T Consensus 391 ~~~~~~LSgGq~qrl~la 408 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILG 408 (501)
T ss_pred cCccccCCHHHHHHHHHH
Confidence 999999999999999986
No 19
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.2e-65 Score=554.04 Aligned_cols=368 Identities=21% Similarity=0.247 Sum_probs=276.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.++|.+. .++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 58999999999888899999999999999999999999999999999999999999999876431 38999
Q ss_pred ecccccCc--------CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 167 SQEFEVSM--------SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 167 ~Q~~~~~~--------~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
+|++...+ ..|+.+++.. ......+
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~ 115 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQD-----------------------------------------------EVKDPAR 115 (490)
T ss_pred ccCcchhhcccchhhccccHHHhccc-----------------------------------------------chhHHHH
Confidence 99864311 2344443310 0112345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecC
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd 315 (555)
+.++++.+|+. ...++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||
T Consensus 116 ~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 116 CEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred HHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 67788899996 457899999999999999999999999999999999999999999999998754 47899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERL 395 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 395 (555)
++++.++||+|++|++|++. +.|+++++..... +.++.... .+..
T Consensus 195 ~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~~-----------------------~~~~~~~~----------~~~~- 239 (490)
T PRK10938 195 FDEIPDFVQFAGVLADCTLA-ETGEREEILQQAL-----------------------VAQLAHSE----------QLEG- 239 (490)
T ss_pred HHHHHhhCCEEEEEECCEEE-EeCCHHHHhcchh-----------------------hhhhhhhh----------ccCc-
Confidence 99999999999999999974 5577655432100 00000000 0000
Q ss_pred HHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
...+..... .. +.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+
T Consensus 240 -----~~~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 240 -----VQLPEPDEP-SA--RHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred -----cccCccccc-cc--ccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 000000000 00 0001124568999999999987789999999999999999999999999999999999877
Q ss_pred C-CceEEEECCcee-----------eeEEEecCCccCCCCCCCHHHHHHhhcc-------cCc---HHHHHHHHhhCCCC
Q 008750 476 P-RGGEVLLGEHNV-----------LPNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFK 533 (555)
Q Consensus 476 p-~~G~v~~~~~~~-----------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~---~~~~~~~L~~~~~~ 533 (555)
| ++|+|.++|.++ .++|++|++........++.+++..... ... ...+..+|..+++.
T Consensus 312 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (490)
T PRK10938 312 QGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGID 391 (490)
T ss_pred cccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCc
Confidence 5 699999987432 2689999752112223566666542210 011 23578899999997
Q ss_pred hhhhccccCCCChhHHhchhcC
Q 008750 534 ADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 534 ~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+..++++..|||||||||+||
T Consensus 392 ~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 392 KRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred hhhccCchhhCCHHHHHHHHHH
Confidence 5468999999999999999986
No 20
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-64 Score=548.48 Aligned_cols=365 Identities=20% Similarity=0.306 Sum_probs=279.1
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEEec
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQ 168 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v~Q 168 (555)
++||+++|+++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 4789999988889999999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..||.+|+....... ... ..+.....+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l~~~~l 124 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPT--------------KGM----------------------FVDQDKMYRDTKAIFDELDI 124 (491)
T ss_pred ccccccCCCHHHHhhcccccc--------------ccc----------------------ccCHHHHHHHHHHHHHHcCC
Confidence 998878899999985321000 000 00011123457778889999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcce
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dr 325 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||++++..+||+
T Consensus 125 ~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 125 D-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred C-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 6 456888999999999999999999999999999999999999999999888753 589999999999999999999
Q ss_pred eEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCcc
Q 008750 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPF 405 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 405 (555)
|++|++|++. ..|+..++... +....+.. .. .....
T Consensus 204 i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~~-------------------~~~~~ 239 (491)
T PRK10982 204 ITILRDGQWI-ATQPLAGLTMD-----------------------KIIAMMVG-RS-------------------LTQRF 239 (491)
T ss_pred EEEEECCEEE-eecChhhCCHH-----------------------HHHHHHhC-CC-------------------ccccc
Confidence 9999999874 44443322100 00000000 00 00000
Q ss_pred ccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
+. +. ...++++|+++|+++.| +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|.|.++|
T Consensus 240 ~~-------~~-~~~~~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 309 (491)
T PRK10982 240 PD-------KE-NKPGEVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309 (491)
T ss_pred cc-------cc-CCCCCcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC
Confidence 00 00 11234679999999875 3589999999999999999999999999999999999999999999987
Q ss_pred ceee-----------eEEEecCCc-cCCCCCCCHHHH-----HHhhcc--c-C----cHHHHHHHHhhCCCChhhhcccc
Q 008750 486 HNVL-----------PNYFEQNQA-EALDLDKTVLET-----VAEAAE--D-W----RIDDIKGLLGRCNFKADMLDRKV 541 (555)
Q Consensus 486 ~~~~-----------~~y~~Q~~~-~~l~~~~tv~e~-----l~~~~~--~-~----~~~~~~~~L~~~~~~~~~~~~~~ 541 (555)
.++. ++|++|++. ..+.++.|+.++ +..... . . ....++.++..+++..+..++++
T Consensus 310 ~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 389 (491)
T PRK10982 310 KKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI 389 (491)
T ss_pred EECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc
Confidence 5542 578998752 234556666554 332111 1 0 12357889999999655689999
Q ss_pred CCCChhHHhchhcC
Q 008750 542 SLLSGGEKVNQTLV 555 (555)
Q Consensus 542 ~~LSGGek~Rv~La 555 (555)
.+|||||||||+||
T Consensus 390 ~~LSgGq~qrv~la 403 (491)
T PRK10982 390 GSLSGGNQQKVIIG 403 (491)
T ss_pred ccCCcHHHHHHHHH
Confidence 99999999999986
No 21
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-65 Score=524.99 Aligned_cols=413 Identities=30% Similarity=0.483 Sum_probs=333.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
...|.+.+++..||++.+|++-++++..|.++||||+||+|||||||+|+. |.|... -++|+..-.+
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f-------~veqE~~g~~ 144 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF-------HVEQEVRGDD 144 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCcc-------Cchhheeccc
Confidence 456899999999999999999999999999999999999999999999997 444322 1233321100
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHhhhcCCCcccc
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD-TLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~lgl~~~~~ 253 (555)
..-..+.+ .. |.... .++.+-. .+... ..++.+.++|..+||+++..
T Consensus 145 t~~~~~~l-~~-----------------------D~~~~-dfl~~e~-------~l~~~~~l~ei~~~~L~glGFt~emq 192 (582)
T KOG0062|consen 145 TEALQSVL-ES-----------------------DTERL-DFLAEEK-------ELLAGLTLEEIYDKILAGLGFTPEMQ 192 (582)
T ss_pred hHHHhhhh-hc-----------------------cHHHH-HHHHhhh-------hhhccchHHHHHHHHHHhCCCCHHHH
Confidence 00000000 00 00000 0000000 00001 22333455899999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
.+++.+||||||+|++|||||..+|||||||||||+||+.++.||.++|+.++.|+|+||||+.|++.+|+.||.+++-+
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred hccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceee
Q 008750 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (555)
Q Consensus 334 ~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 413 (555)
+..|.|||++|...+.+....++..|+.+.+..+.++..+.++.- ++.++.+.+.|+.-+...+....+.......+.
T Consensus 273 L~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrY--na~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~ 350 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRY--NAARASSVQSRIKMLGKLPALKSTLIEVLIGFL 350 (582)
T ss_pred hhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhcc--CcccchhHHHHHHHhccCCCCCccceeccccee
Confidence 999999999999999999999999999998888889999998763 333444555566555543333334444455677
Q ss_pred ccCC-CCCCCceEEEEeeeEEcCCc--cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeee
Q 008750 414 FPER-GRSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490 (555)
Q Consensus 414 ~~~~-~~~~~~~l~~~~l~~~y~~~--~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~ 490 (555)
||+. .....+++++.+|+|.|+.. .++.++++++..-++++++|+||+||||++|++.|.+.|..|.+.+. .++++
T Consensus 351 fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-~r~ri 429 (582)
T KOG0062|consen 351 FPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-PRLRI 429 (582)
T ss_pred cCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-cccee
Confidence 7773 34567899999999999643 48999999999999999999999999999999999999999998887 57899
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+||.|+..+.++...+..+.++...+...++++|..|+.||++++.+.+++..||||||.||+||
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFA 494 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHH
Confidence 99999988888877888888888888888999999999999999999999999999999999987
No 22
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-61 Score=486.52 Aligned_cols=437 Identities=30% Similarity=0.544 Sum_probs=342.2
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
..|.++|.+.+-.++.+|.|.||.|-.|.++|||||||-||||||+.|+.---. + ..++.+-|+.|+... ..
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala------I-PpnIDvLlCEQEvva-d~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA------I-PPNIDVLLCEQEVVA-DS 334 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc------C-CCCCceEeeeeeeee-cC
Confidence 458999999999899999999999999999999999999999999999864211 0 123456777887654 33
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
.+..+.++.+....+......+.+...++... .... +++.........++.+..+.+++.+|..+||+.++.+|
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd--~taa----Erl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGD--TTAA----ERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc--hHHH----HHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 44444444443333333333344444443321 1111 22222333334567788899999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
+...+|||||+||+|||||..+|-+|+|||||||||..+.-||-++|+.+.+|++|||||-.|++.+|+.||.|++-++.
T Consensus 409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHH-HHHHHHH---------------hh
Q 008750 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK-KLERLQE---------------EE 399 (555)
Q Consensus 336 ~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~---------------~~ 399 (555)
+|.|||.-|.....+..+.....|+++++.++.++. .+..+.++....+ .+.+-+. ..
T Consensus 489 yYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa------~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapE 562 (807)
T KOG0066|consen 489 YYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKA------EGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPE 562 (807)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHhccccccCccccccCHH
Confidence 999999999887777777677778877776654432 1111112211111 1111110 00
Q ss_pred hhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 008750 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~ 478 (555)
...+| ....++|.||.+..-..+++-+.+|+|.|++ +++|..++|-|.--.+|||+||||.||||||++|.|-+.|..
T Consensus 563 LL~Rp-KEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~ 641 (807)
T KOG0066|consen 563 LLQRP-KEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND 641 (807)
T ss_pred HHhCc-hheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc
Confidence 11111 2345788998876667889999999999964 689999999999999999999999999999999999999999
Q ss_pred eEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 479 GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 479 G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|+.+-+ +++++|+|+|+..+.|..+.|..+.++..+ ....+++|..|+.||+......-.+..||||||.||+||
T Consensus 642 GE~RKn-hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVala 716 (807)
T KOG0066|consen 642 GELRKN-HRLRIGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALA 716 (807)
T ss_pred chhhcc-ceeeeechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHH
Confidence 998775 789999999998889999999999998775 456789999999999976666778899999999999986
No 23
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3e-60 Score=524.63 Aligned_cols=356 Identities=25% Similarity=0.338 Sum_probs=266.3
Q ss_pred eEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCCC---------
Q 008750 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN--------- 160 (555)
Q Consensus 102 nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-----------~~g~~--------- 160 (555)
+++++|+++ .+|++++ .+++|+++||||+||||||||+|+|+|+++|++|+|. ++|.+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 489999864 6999999 9999999999999999999999999999999999997 66532
Q ss_pred ---ceEEEEecccccCc---CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 ---MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
.++++.+|.....+ ..||.+++.. .+
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~------------------------------------------------~~ 188 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKK------------------------------------------------VD 188 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHh------------------------------------------------hh
Confidence 23566666543322 2366555421 01
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVII 312 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIii 312 (555)
...++.++++.+|+. ...++++.+|||||+|||+||+||+.+|++|||||||++||+..+.++.+++++. +.|||+|
T Consensus 189 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIiv 267 (590)
T PRK13409 189 ERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267 (590)
T ss_pred HHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Confidence 123567788889996 4578999999999999999999999999999999999999999999999887643 8999999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKL 392 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 392 (555)
|||++++..+||+|++|+++. |.|..+......+. . ...+...+.. .
T Consensus 268 sHd~~~l~~~~D~v~vl~~~~-----g~~g~~~~~~~~~~------------~---i~~~~~~~~~-----~-------- 314 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGEP-----GAYGVVSKPKGVRV------------G---INEYLKGYLP-----E-------- 314 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCCc-----cccceecchhHHHH------------h---HHHHHHhcch-----h--------
Confidence 999999999999999997641 22221111110000 0 0001110000 0
Q ss_pred HHHHHhhhhcCccccccceeeccCC--CCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHH
Q 008750 393 ERLQEEEQIEKPFQRKQMKIRFPER--GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (555)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L 470 (555)
+... .. + ....+.++.. ...+.++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|
T Consensus 315 e~~~----~~-~---~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L 385 (590)
T PRK13409 315 ENMR----IR-P---EPIEFEERPPRDESERETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLL 385 (590)
T ss_pred hhhh----cc-c---cCcceecCCCccccCCceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0000 00 0 0011111111 11346789999999999865 58999999999999999999999999999999
Q ss_pred hCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccC-cHHHHHHHHhhCCCChhhhccccCCCChhHH
Q 008750 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (555)
Q Consensus 471 ~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek 549 (555)
+|+++|++|+|.++ +.++|++|++ .++++.||.+++....... ....+..+|..+++. +..++++.+||||||
T Consensus 386 ~Gl~~p~~G~I~~~---~~i~y~~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~ 459 (590)
T PRK13409 386 AGVLKPDEGEVDPE---LKISYKPQYI--KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGEL 459 (590)
T ss_pred hCCCCCCceEEEEe---eeEEEecccc--cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHH
Confidence 99999999999885 5789999985 3567889999997642222 123567899999996 678999999999999
Q ss_pred hchhcC
Q 008750 550 VNQTLV 555 (555)
Q Consensus 550 ~Rv~La 555 (555)
|||+||
T Consensus 460 QRvaiA 465 (590)
T PRK13409 460 QRVAIA 465 (590)
T ss_pred HHHHHH
Confidence 999986
No 24
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.5e-60 Score=473.13 Aligned_cols=372 Identities=20% Similarity=0.326 Sum_probs=294.3
Q ss_pred CccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc----
Q 008750 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~---- 161 (555)
.+.++++|+++.|. ...++++|||+|++||++||||+||||||-....|+|+++. -+|+|.++|.+.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46799999999995 46799999999999999999999999999999999999864 368999998652
Q ss_pred ----------eEEEEecccccC--cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Q 008750 162 ----------KIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (555)
Q Consensus 162 ----------~ig~v~Q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
+|+++||+|... +-.|+..-+... ......
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~--------------------------------------l~~Hrg 125 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV--------------------------------------LRLHRG 125 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHH--------------------------------------HHHHhc
Confidence 699999998543 333443333211 111123
Q ss_pred cCcccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----
Q 008750 230 VNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---- 303 (555)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---- 303 (555)
+.....++++.++|+.+|++. ...+.+|++|||||||||.||.||+.+|++||.||||.+||+.....+.++|+
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 455667889999999999973 45789999999999999999999999999999999999999998888887764
Q ss_pred CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Q 008750 304 KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (555)
Q Consensus 304 ~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (555)
+.|+++++||||+..+.++||||+||..|+++. .|...+.+.. .+..|.+ .++
T Consensus 206 ~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE-~~~t~~lF~~-------PqHpYTr---------~Ll---------- 258 (534)
T COG4172 206 ELGMAILFITHDLGIVRKFADRVYVMQHGEIVE-TGTTETLFAA-------PQHPYTR---------KLL---------- 258 (534)
T ss_pred HhCcEEEEEeccHHHHHHhhhhEEEEeccEEee-cCcHHHHhhC-------CCChHHH---------HHH----------
Confidence 579999999999999999999999999999754 3433222211 1111100 000
Q ss_pred hHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-----------ccceeceEEEEecCCE
Q 008750 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEK 452 (555)
Q Consensus 384 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~ll~~vsl~i~~Ge~ 452 (555)
.. .|.-.+ ++....+.++++++++.+.|+- ..+++++||++++|+.
T Consensus 259 ------------~a-----eP~g~~------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqT 315 (534)
T COG4172 259 ------------AA-----EPSGDP------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQT 315 (534)
T ss_pred ------------hc-----CCCCCC------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCe
Confidence 00 010000 0112235789999999998852 1368899999999999
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------------eEEEecCCccCCCCCCCHHHHHHhhcc---
Q 008750 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PNYFEQNQAEALDLDKTVLETVAEAAE--- 516 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-------------~~y~~Q~~~~~l~~~~tv~e~l~~~~~--- 516 (555)
++|+|.+|||||||-.+|.+++++. |.|+|.|.++. ...++|+|...|+|..||.+.+.+...
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 9999999999999999999999987 99999988662 347899999999999999999987632
Q ss_pred -----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 517 -----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 517 -----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
....+.+...|...|+++...+|.|++.|||||||++||
T Consensus 395 ~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIA 438 (534)
T COG4172 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIA 438 (534)
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHH
Confidence 122356889999999999999999999999999999986
No 25
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2e-58 Score=476.91 Aligned_cols=372 Identities=25% Similarity=0.366 Sum_probs=300.3
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
+.++++|++|.|++..+++||||+|++||++||+|+||+|||||+++|.|+|+|++|+|.++|+. ..||
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 45899999999999999999999999999999999999999999999999999999999999964 3699
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
+|+|++.+.+++||.||+..+.... ....++.....+++.++.+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~------------------------------------~~~~~~~~~~~~~i~~l~~ 126 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPS------------------------------------KGGLIDRRQARARIKELSE 126 (501)
T ss_pred EEeeccccccccchhhhhhhcCccc------------------------------------cccccCHHHHHHHHHHHHH
Confidence 9999999999999999997543210 0012334456788999999
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+||+ -..++++.+||-||||||.|-+||+.+|++|||||||+.|-|...+.|.+.|+ +.|+|||+|||.+.++.+
T Consensus 127 ~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 127 RYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HhCCC-CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 99997 45689999999999999999999999999999999999999999999988764 579999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (555)
+||||.+|+.|+++ |.++.... . ..++..+.|.+.. +
T Consensus 206 iaDrvTVLR~Gkvv---gt~~~~~~--------------~------t~~ela~lMvG~~--------------------v 242 (501)
T COG3845 206 IADRVTVLRRGKVV---GTVDPVAE--------------T------TEEELAELMVGRE--------------------V 242 (501)
T ss_pred hhCeeEEEeCCeEE---eeecCCCC--------------C------CHHHHHHHhcCCc--------------------c
Confidence 99999999999853 32221000 0 0011111111100 0
Q ss_pred cCccccccceeeccCCCCCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008750 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (555)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~ 480 (555)
..+. .. .+..+++++++++++++.-.. ...++++||+|+.||+++|.|-.|.|.+.|+.+|+|+.+|.+|.
T Consensus 243 ~~~~-------~~-~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~ 314 (501)
T COG3845 243 VLRV-------VK-PPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314 (501)
T ss_pred cccc-------cc-CCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCce
Confidence 0000 00 123457899999999987543 36799999999999999999999999999999999999999999
Q ss_pred EEECCcee------------eeEEEecCC-ccCCCCCCCHHHHHHhhccc-------------CcHHHHHHHHhhCCCCh
Q 008750 481 VLLGEHNV------------LPNYFEQNQ-AEALDLDKTVLETVAEAAED-------------WRIDDIKGLLGRCNFKA 534 (555)
Q Consensus 481 v~~~~~~~------------~~~y~~Q~~-~~~l~~~~tv~e~l~~~~~~-------------~~~~~~~~~L~~~~~~~ 534 (555)
|.++|+++ -.+|+|.+. ...+-++.|+.+|+...... .....++.+...|++..
T Consensus 315 I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~ 394 (501)
T COG3845 315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 (501)
T ss_pred EEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC
Confidence 99999875 146888764 45677999999998654221 11235778999999987
Q ss_pred hhhccccCCCChhHHhchhcC
Q 008750 535 DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 535 ~~~~~~~~~LSGGek~Rv~La 555 (555)
.....++.+||||++||+.+|
T Consensus 395 ~~~~~~a~~LSGGNqQK~Ila 415 (501)
T COG3845 395 PSPDAPARSLSGGNQQKLILA 415 (501)
T ss_pred CCCCcchhhcCCcceehhhhh
Confidence 788899999999999999876
No 26
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-58 Score=484.60 Aligned_cols=370 Identities=26% Similarity=0.386 Sum_probs=296.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
.+.++++||+|+|++.++|+||||+|.+||++||+|+||||||||+|+|+|.++|++|+|.++|.. ..|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 457899999999999999999999999999999999999999999999999999999999999864 369
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+.|+|+..+.+++||.||+....... .....++...+..++.++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~-----------------------------------~~~g~id~~~m~~~A~~~l 130 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPT-----------------------------------RRFGLIDRKAMRRRARELL 130 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccc-----------------------------------cCCCccCHHHHHHHHHHHH
Confidence 99999999999999999986432100 0011234556778899999
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+..+ .+.++.+||+||||.|+|||||..+++||||||||++|+....+.|.+.+ ++.|.+||+|||+++++.
T Consensus 131 ~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~ 209 (500)
T COG1129 131 ARLGLDID-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF 209 (500)
T ss_pred HHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 99999733 78999999999999999999999999999999999999999888888765 568999999999999999
Q ss_pred hhcceeEEecCCeEeeccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhh
Q 008750 321 QLCTKIVETEMGVSRTYEGNY-SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 399 (555)
++||||.||++|+.+- .++. .++- ..+.++.|.+. .+
T Consensus 210 ~i~DritVlRDG~~v~-~~~~~~~~~-----------------------~~~lv~~MvGr-----------~~------- 247 (500)
T COG1129 210 EIADRITVLRDGRVVG-TRPTAAETS-----------------------EDELVRLMVGR-----------EL------- 247 (500)
T ss_pred HhcCEEEEEeCCEEee-ecccccCCC-----------------------HHHHHHHhhCc-----------ch-------
Confidence 9999999999998532 2221 1110 11122222210 00
Q ss_pred hhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
...++. . .....+++++++++++.. ..++++||++++||+++|.|-=|+|+|.|+++|.|..++.+|
T Consensus 248 --~~~~~~-~------~~~~~~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G 314 (500)
T COG1129 248 --EDLFPE-P------PEEGIGEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSG 314 (500)
T ss_pred --hhhccc-c------cccCCCCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc
Confidence 000000 0 001245788999999853 258999999999999999999999999999999999999999
Q ss_pred EEEECCceee-----------eEEEecCC-ccCCCCCCCHHHHHHhhcc-c----------CcHHHHHHHHhhCCCChhh
Q 008750 480 EVLLGEHNVL-----------PNYFEQNQ-AEALDLDKTVLETVAEAAE-D----------WRIDDIKGLLGRCNFKADM 536 (555)
Q Consensus 480 ~v~~~~~~~~-----------~~y~~Q~~-~~~l~~~~tv~e~l~~~~~-~----------~~~~~~~~~L~~~~~~~~~ 536 (555)
+|.++|+++. ++|++-+. .+.+.++.++.+|+..... . .....+..+..++.+....
T Consensus 315 ~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s 394 (500)
T COG1129 315 EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394 (500)
T ss_pred eEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC
Confidence 9999998663 46887653 3568899999999865421 0 1123577889999998888
Q ss_pred hccccCCCChhHHhchhcC
Q 008750 537 LDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 537 ~~~~~~~LSGGek~Rv~La 555 (555)
.++++.+||||+||||.||
T Consensus 395 ~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 395 PEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred ccchhhcCCchhhhhHHHH
Confidence 9999999999999999985
No 27
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.4e-57 Score=507.34 Aligned_cols=254 Identities=28% Similarity=0.404 Sum_probs=191.8
Q ss_pred hhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc---eeeeeeeEEEECCCEE
Q 008750 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGEKV 126 (555)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~---~vL~~vsl~i~~Ge~~ 126 (555)
............|..+...+|+.....+.......... ......+.|+++||+|+|+.+ ++|+|+||.|++|+++
T Consensus 305 gqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~v 382 (1228)
T KOG0055|consen 305 GQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTV 382 (1228)
T ss_pred hccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEE
Confidence 34445556677777777888876544433222110110 112456779999999999865 5999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh----HHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEI 192 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~ 192 (555)
||||+|||||||++++|.++|.|++|+|.++|.+. +||.|+|+|.+ |..||+||+..+- .+++..
T Consensus 383 alVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~~dat~~~i~~ 461 (1228)
T KOG0055|consen 383 ALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGKPDATREEIEE 461 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCCCcccHHHHHH
Confidence 99999999999999999999999999999999764 59999999955 8999999997654 222222
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 008750 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272 (555)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAr 272 (555)
+.+... ....+..+.+.++- ...++.+ +|||||||||||||
T Consensus 462 a~k~an------------------------------------a~~fi~~lp~g~~T--~vge~g~-qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 462 AAKAAN------------------------------------AHDFILKLPDGYDT--LVGERGV-QLSGGQKQRIAIAR 502 (1228)
T ss_pred HHHHcc------------------------------------HHHHHHhhHHhhcc--cccCCCC-CCChHHHHHHHHHH
Confidence 221111 12223333333322 2234444 69999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeec---------cCCh
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY---------EGNY 341 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~---------~G~y 341 (555)
||+.+|+|||||||||+||+++++.+.+.|.+ .|+|.|+|+|+++.+.. ||+|++|++|++++. .|-|
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~G~Y 581 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGGIY 581 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhccchH
Confidence 99999999999999999999999999999964 58999999999999987 999999999997542 3556
Q ss_pred HHHHH
Q 008750 342 SQYVL 346 (555)
Q Consensus 342 ~~~~~ 346 (555)
.++..
T Consensus 582 ~~lv~ 586 (1228)
T KOG0055|consen 582 SSLVR 586 (1228)
T ss_pred HHHHH
Confidence 66544
No 28
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-55 Score=410.44 Aligned_cols=211 Identities=29% Similarity=0.483 Sum_probs=187.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++||+|+||+..+|+||||+|.+||+++||||||||||||||||+|+.+|++|+|.++|.+ .++|
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 36899999999999999999999999999999999999999999999999999999999999842 2589
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
+|||++++|+++||.||++.+.. ....++..+.++++.++|+
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~--------------------------------------~v~~~~k~eA~~~A~~lL~ 122 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPV--------------------------------------KVKKLSKAEAREKALELLE 122 (240)
T ss_pred eecccccccccchHHHHHHhhhH--------------------------------------HHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999975421 0123455667888999999
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~ 321 (555)
++||. +..+.+|.+|||||||||||||||+.+|+++|+|||||+|||+....+.+.+ .+.|+|+|+|||++.|+.+
T Consensus 123 ~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 123 KVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred HcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence 99996 5789999999999999999999999999999999999999999988887765 4679999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+||||++|++|+++. .|+.+++..
T Consensus 202 VadrviFmd~G~iie-~g~p~~~f~ 225 (240)
T COG1126 202 VADRVIFMDQGKIIE-EGPPEEFFD 225 (240)
T ss_pred hhheEEEeeCCEEEE-ecCHHHHhc
Confidence 999999999998754 456666654
No 29
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.3e-51 Score=487.97 Aligned_cols=266 Identities=17% Similarity=0.268 Sum_probs=176.4
Q ss_pred hHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEE
Q 008750 53 TVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLV 129 (555)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lv 129 (555)
...+..++.+..+.+++++....++........... .....|+++||+|+|++ .++|+|+||+|++|+++|||
T Consensus 342 ~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~----~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIv 417 (1466)
T PTZ00265 342 LPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKL----KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFV 417 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccC----CCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEE
Confidence 334556777888888877765443321110000000 11135999999999975 36999999999999999999
Q ss_pred cCCCccHHHHHHHHHcCCCCCceEEEEc-CCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHH------
Q 008750 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKA-KSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI------ 192 (555)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~-g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~------ 192 (555)
|+||||||||+++|+|+++|++|+|.++ |.+. .||||+|++.++ ..||+||+..+.......
T Consensus 418 G~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF-~~TI~eNI~~g~~~~~~~~~~~~~ 496 (1466)
T PTZ00265 418 GESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLF-SNSIKNNIKYSLYSLKDLEALSNY 496 (1466)
T ss_pred CCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccch-hccHHHHHHhcCCCccccchhccc
Confidence 9999999999999999999999999994 4432 499999999885 579999997532100000
Q ss_pred HH------H-----HHHHHHH---HhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc--------
Q 008750 193 AG------K-----LERVQKA---LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-------- 250 (555)
Q Consensus 193 ~~------~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-------- 250 (555)
.. . ....... ......+.......++ . ........++.+.++++.+++..
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~-~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g 568 (1466)
T PTZ00265 497 YNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIE-------M-RKNYQTIKDSEVVDVSKKVLIHDFVSALPDK 568 (1466)
T ss_pred cccccccccccccccccccccccchhhhcccccchhhhhh-------c-ccccccCCHHHHHHHHHHhCcHHHHHhCccc
Confidence 00 0 0000000 0000000000000000 0 00000111233444444444321
Q ss_pred --cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 251 --DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 251 --~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
........+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|.+ .|+|+|+||||++.+ +.||
T Consensus 569 ~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD 647 (1466)
T PTZ00265 569 YETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYAN 647 (1466)
T ss_pred cCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCC
Confidence 112455779999999999999999999999999999999999999999888754 379999999999999 4799
Q ss_pred eeEEecCC
Q 008750 325 KIVETEMG 332 (555)
Q Consensus 325 ri~~l~~G 332 (555)
+|++|++|
T Consensus 648 ~Iivl~~g 655 (1466)
T PTZ00265 648 TIFVLSNR 655 (1466)
T ss_pred EEEEEeCC
Confidence 99999986
No 30
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9e-50 Score=481.72 Aligned_cols=252 Identities=19% Similarity=0.289 Sum_probs=176.7
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
++.....-+.....+..+++|+.+....+..... ..+.. ......|+++|++|+|++ .++|+|+||+|++|+
T Consensus 570 pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~--~~~~~---~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge 644 (1495)
T PLN03232 570 PLNMLPNLLSQVVNANVSLQRIEELLLSEERILA--QNPPL---QPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS 644 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--ccCCc---CCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCC
Confidence 4455555556677778888877665433221100 00000 012235999999999964 579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (555)
+++|||++|||||||+++|+|+++|++|.+..- ...|+||+|++.+ ++.||+||+..+... + . ++..+.++
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~--~~~Iayv~Q~p~L-f~gTIreNI~fg~~~--~-~---e~~~~vl~ 715 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVI--RGSVAYVPQVSWI-FNATVRENILFGSDF--E-S---ERYWRAID 715 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEe--cCcEEEEcCcccc-ccccHHHHhhcCCcc--C-H---HHHHHHHH
Confidence 999999999999999999999999999876432 3479999999988 678999999754210 0 0 00111111
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEc
Q 008750 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (555)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLD 284 (555)
.. .+...+.. +. -|.+....++ -.+|||||||||+||||++.+|+|||||
T Consensus 716 ~~---------------------------~L~~di~~-Lp-~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLD 765 (1495)
T PLN03232 716 VT---------------------------ALQHDLDL-LP-GRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFD 765 (1495)
T ss_pred Hh---------------------------CCHHHHHh-CC-CCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00 01111111 11 1222222233 3479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 285 EPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 285 EPTs~LD~~~~~~l~~~-l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||+||..+.+.+.+. +.. .++|+|+|||+++.+. .||+|++|++|++. ..|+|++..
T Consensus 766 EptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~-~~Gt~~eL~ 827 (1495)
T PLN03232 766 DPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIK-EEGTFAELS 827 (1495)
T ss_pred CCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEE-EecCHHHHH
Confidence 99999999988877553 443 5799999999999986 59999999999874 556666553
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-49 Score=481.15 Aligned_cols=251 Identities=20% Similarity=0.291 Sum_probs=178.0
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
++......+.+..++..+++|+.+....+..... ..+.. ....+.|+++|++|+|+. +++|+|+||+|++|+
T Consensus 570 pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~--~~~~~---~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge 644 (1622)
T PLN03130 570 PLFMLPNLITQAVNANVSLKRLEELLLAEERVLL--PNPPL---EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGS 644 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--cCCcc---cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCC
Confidence 4444445556677777888877665432211000 00000 011245999999999963 579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~-G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 203 (555)
+++|||++|||||||+++|+|+++|++ |+|.+.+ .|+||+|++.+ ++.||+||+..+-... . ++..+.+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---~Iayv~Q~p~L-fngTIreNI~fg~~~d---~---e~y~~vl 714 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---TVAYVPQVSWI-FNATVRDNILFGSPFD---P---ERYERAI 714 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC---eEEEEcCcccc-CCCCHHHHHhCCCccc---H---HHHHHHH
Confidence 999999999999999999999999999 9999754 69999999988 6789999997542100 0 0011111
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 008750 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (555)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlL 283 (555)
+.+ .+...+..+-+ |......++ -.+|||||||||+|||||+.+|+||||
T Consensus 715 ~a~---------------------------~L~~di~~LP~--Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLL 764 (1622)
T PLN03130 715 DVT---------------------------ALQHDLDLLPG--GDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIF 764 (1622)
T ss_pred HHh---------------------------CcHHHHHhCCC--cccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 100 11111111111 222222233 357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHH-HHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 284 DEPTNHLDLDTIEWLEG-YLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 284 DEPTs~LD~~~~~~l~~-~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||||+||+.+.+.+.+ .+.. .++|+|+|||+++.+. .||+|++|++|++. ..|+|++..
T Consensus 765 DEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~-e~Gt~~eL~ 827 (1622)
T PLN03130 765 DDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIK-EEGTYEELS 827 (1622)
T ss_pred CCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999998877654 4443 4899999999999986 59999999999874 567666553
No 32
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.8e-49 Score=479.78 Aligned_cols=254 Identities=18% Similarity=0.267 Sum_probs=179.8
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCC
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGE 124 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge 124 (555)
.++......+...+++..+++|+.+....+............. ......|+++|++|.|++ .++|+|+||+|++|+
T Consensus 588 ~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~ 665 (1522)
T TIGR00957 588 FPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIK--PGEGNSITVHNATFTWARDLPPTLNGITFSIPEGA 665 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccC--CCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCC
Confidence 3455555555667777777777766543221111000000000 011136999999999974 479999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (555)
+++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+ ++.||+||+..+..... .+...+ ++
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---~i~yv~Q~~~l-~~~Ti~eNI~~g~~~~~---~~~~~~---~~ 735 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---SVAYVPQQAWI-QNDSLRENILFGKALNE---KYYQQV---LE 735 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---EEEEEcCCccc-cCCcHHHHhhcCCccCH---HHHHHH---HH
Confidence 9999999999999999999999999999999986 69999999887 67899999975321000 000000 00
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEc
Q 008750 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (555)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLD 284 (555)
. ..+...+.. +. .|... ..+....+|||||||||+|||||+.+|+++|||
T Consensus 736 ~---------------------------~~l~~~l~~-~~-~g~~t-~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD 785 (1522)
T TIGR00957 736 A---------------------------CALLPDLEI-LP-SGDRT-EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785 (1522)
T ss_pred H---------------------------hCCHHHHHh-cC-CCCCc-eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 000000110 10 12211 234556799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcC-----CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 285 EPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 285 EPTs~LD~~~~~~l~~~l~~-----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++||+.+.+++.+.+.+ .++|+|+|||+++++.. ||+|++|++|++. ..|+|++.
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~-~~g~~~~l 848 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKIS-EMGSYQEL 848 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEE-eeCCHHHH
Confidence 99999999999999887632 47899999999999976 9999999999874 44555443
No 33
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-51 Score=388.47 Aligned_cols=209 Identities=27% Similarity=0.425 Sum_probs=186.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++||||.|+++.+++|+||+|++||++++||||||||||+||+|.++++|++|+|.++|.+. +||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999998753 69999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
-|...+||++||.||+..... ....+...+++++.++|+.+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~---------------------------------------L~~w~k~~i~~r~~ELl~lv 121 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPK---------------------------------------LLGWDKERIKKRADELLDLV 121 (309)
T ss_pred hhhcccCCCccHHHHHHhhhh---------------------------------------hcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999864210 01234456778999999999
Q ss_pred CCCc-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHh
Q 008750 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~ 321 (555)
||++ ++.+|+|++|||||+|||.+||||+.+|++||+|||+++|||-++..|.+.+ ++.++||||||||++++..
T Consensus 122 gL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 122 GLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred CCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 9986 6999999999999999999999999999999999999999999998888765 3579999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++|||++|+.|+++.|. +.++.+
T Consensus 202 Ladri~vm~~G~i~Q~~-~P~~il 224 (309)
T COG1125 202 LADRIAVMDAGEIVQYD-TPDEIL 224 (309)
T ss_pred hhceEEEecCCeEEEeC-CHHHHH
Confidence 99999999999987664 444443
No 34
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=396.88 Aligned_cols=208 Identities=33% Similarity=0.551 Sum_probs=185.5
Q ss_pred cEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
+|++++|+|.|+. ..+|+||||+|++||++||||.||||||||+|+|.++..|++|+|.++|.+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5899999999975 4699999999999999999999999999999999999999999999999542
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
+|||+||+++++.+.||++|+..++. . ...+..+++++
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLe----i-----------------------------------ag~~k~ei~~R 121 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLE----L-----------------------------------AGVPKAEIKQR 121 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHh----h-----------------------------------cCCCHHHHHHH
Confidence 69999999999989999999976531 0 12345677899
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSH 314 (555)
+.++|+.+||+ +..+++|.+|||||||||+|||||+.+|+|||+|||||+|||++-+.+.++|+ +.|.||++|||
T Consensus 122 V~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 122 VAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 99999999997 78899999999999999999999999999999999999999999888888774 47999999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.|+.+.++||||.+|++|+++. .|...+..
T Consensus 201 Em~Vvk~ic~rVavm~~G~lvE-~G~v~~vF 230 (339)
T COG1135 201 EMEVVKRICDRVAVLDQGRLVE-EGTVSEVF 230 (339)
T ss_pred hHHHHHHHhhhheEeeCCEEEE-eccHHHhh
Confidence 9999999999999999999854 45554443
No 35
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-50 Score=388.19 Aligned_cols=197 Identities=30% Similarity=0.428 Sum_probs=175.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEeccc
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~~ 170 (555)
..+.+++|++.|++..+|+||||+|.+||+++||||||||||||||+|+|+.+|++|+|.++|.. ..++||+|++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 35899999999999999999999999999999999999999999999999999999999998864 3799999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.++|..||.+|+..+... ......+..+++.++|+.+||.
T Consensus 82 ~LlPW~Tv~~NV~l~l~~---------------------------------------~~~~~~e~~~~a~~~L~~VgL~- 121 (248)
T COG1116 82 ALLPWLTVLDNVALGLEL---------------------------------------RGKSKAEARERAKELLELVGLA- 121 (248)
T ss_pred cccchhhHHhhheehhhc---------------------------------------cccchHhHHHHHHHHHHHcCCc-
Confidence 999999999999754310 0112334456889999999996
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhccee
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri 326 (555)
+..+++|++|||||||||+|||||+.+|++||||||+++||..++..+.+.| ++.+.|||+||||++++-.++|||
T Consensus 122 ~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRi 201 (248)
T COG1116 122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRV 201 (248)
T ss_pred chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEE
Confidence 6789999999999999999999999999999999999999999987776654 567899999999999999999999
Q ss_pred EEecCC
Q 008750 327 VETEMG 332 (555)
Q Consensus 327 ~~l~~G 332 (555)
++|.++
T Consensus 202 vvl~~~ 207 (248)
T COG1116 202 VVLSNR 207 (248)
T ss_pred EEecCC
Confidence 999984
No 36
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-49 Score=377.40 Aligned_cols=218 Identities=23% Similarity=0.405 Sum_probs=190.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------- 161 (555)
.+.|++++|+++||++.+++||||+|++||+++|+|+||||||||||+|.|+++|++|+|.++|.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5679999999999999999999999999999999999999999999999999999999999998753
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
++|+++|.-.+|.++||+||+..++.+.. .++...+++.+..
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~--------------------------------------~lp~~~i~~lv~~ 127 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHT--------------------------------------KLPESLIRELVLM 127 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhc--------------------------------------cCCHHHHHHHHHH
Confidence 59999999999999999999987654321 1223334555666
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
-|+.+||.....+.+|++|||||++|++|||||+.+|++|++||||+||||.+...+.++++ ..|.|+|+||||+.
T Consensus 128 KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 78899999877899999999999999999999999999999999999999988776666553 36999999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHHHHHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~ 351 (555)
.+..+||||++|.+|++ .+.|+++++......+
T Consensus 208 s~~~i~Drv~~L~~gkv-~~~Gt~~el~~sd~P~ 240 (263)
T COG1127 208 SLLTIADRVAVLADGKV-IAEGTPEELLASDDPW 240 (263)
T ss_pred HHHhhhceEEEEeCCEE-EEeCCHHHHHhCCCHH
Confidence 99999999999999996 6789988876644433
No 37
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-49 Score=379.08 Aligned_cols=200 Identities=28% Similarity=0.501 Sum_probs=177.7
Q ss_pred ccEEEEeEEEEeCCce----eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 96 SGVKLENISKSYKGVT----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~----vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
++|+++|+++.|++.. +|++|||+|.+||++||||+||||||||+++|+|+.+|++|+|.++|..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4699999999998766 9999999999999999999999999999999999999999999999842
Q ss_pred ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 ~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..|-+|||||. +.|..||.+.+..+.. ..+..+.+++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~-----------------------------------------~~~~~~~~~~ 120 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLR-----------------------------------------PHGLSKSQQR 120 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhc-----------------------------------------cCCccHHHHH
Confidence 35899999985 5577888887654321 0123345566
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSH 314 (555)
+.++|+.+|++...++|+|++|||||+|||||||||+.+|++||||||||+||+.....++++|. +++.|+|||||
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999888888763 57899999999
Q ss_pred CHHHHHhhcceeEEecCCeEee
Q 008750 315 DRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~ 336 (555)
|+..+..+||||++|++|.++.
T Consensus 201 dl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 201 DLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred cHHHHHHHhhheeeeeCCeEEE
Confidence 9999999999999999999754
No 38
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.9e-47 Score=453.20 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=174.9
Q ss_pred CccEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eE
Q 008750 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~i 163 (555)
...|+++||++.|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 45799999999995 56899999999999999999999999999999999999999999999998542 59
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
||++|++.+++.+||+|++..... + ......+.++++.+++
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~---------------l------------------------kg~~~~~~~~~v~~lL 1046 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQ---------------L------------------------KGRSWEEAQLEMEAML 1046 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHH---------------h------------------------cCCCHHHHHHHHHHHH
Confidence 999999988888999999853210 0 0011122345678899
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+.+|+. +..++++.+|||||||||+||+||+.+|+||||||||++||+.+++.++++|++ .|+|||++|||++++..
T Consensus 1047 ~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~ 1125 (2272)
T TIGR01257 1047 EDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADL 1125 (2272)
T ss_pred HHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 999996 467899999999999999999999999999999999999999999999998854 48899999999999999
Q ss_pred hcceeEEecCCeEe
Q 008750 322 LCTKIVETEMGVSR 335 (555)
Q Consensus 322 ~~dri~~l~~G~~~ 335 (555)
+||||++|++|++.
T Consensus 1126 laDrI~iL~~GkL~ 1139 (2272)
T TIGR01257 1126 LGDRIAIISQGRLY 1139 (2272)
T ss_pred hCCEEEEEECCEEE
Confidence 99999999999863
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.3e-47 Score=456.28 Aligned_cols=196 Identities=23% Similarity=0.356 Sum_probs=151.1
Q ss_pred EeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHh
Q 008750 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (555)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~ 185 (555)
.++++++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.+. ..|+|++|++.+ ++.||+||+...
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---~~i~yv~Q~~~l-~~~Tv~enI~~~ 744 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---RSIAYVPQQAWI-MNATVRGNILFF 744 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---CeEEEEeCCCcc-CCCcHHHHHHcC
Confidence 3455679999999999999999999999999999999999999999999875 369999999987 578999999753
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChH
Q 008750 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSG 263 (555)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGG 263 (555)
..... +.....++ . ..+.+.++.+ |+.. ..+..+.+||||
T Consensus 745 ~~~~~------~~~~~~~~---------------------------~----~~l~~~l~~l~~g~~t-~i~~~g~~LSGG 786 (1560)
T PTZ00243 745 DEEDA------ARLADAVR---------------------------V----SQLEADLAQLGGGLET-EIGEKGVNLSGG 786 (1560)
T ss_pred ChhhH------HHHHHHHH---------------------------H----hhhHHHHHHhhccchH-HhcCCCCCCCHH
Confidence 21100 00000000 0 0111223333 4432 335567899999
Q ss_pred HHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH-H--cCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCC
Q 008750 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-L--GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (555)
Q Consensus 264 qrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~-l--~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~ 340 (555)
|||||+|||||+.+|++|||||||++||+.+.+.+.+. + ...|+|+|+||||++++. .||+|++|++|++ .+.|+
T Consensus 787 QkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i-~~~G~ 864 (1560)
T PTZ00243 787 QKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRV-EFSGS 864 (1560)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEE-EEecC
Confidence 99999999999999999999999999999987777653 2 124899999999999996 6999999999987 46677
Q ss_pred hHHHH
Q 008750 341 YSQYV 345 (555)
Q Consensus 341 y~~~~ 345 (555)
|+++.
T Consensus 865 ~~~l~ 869 (1560)
T PTZ00243 865 SADFM 869 (1560)
T ss_pred HHHHH
Confidence 77654
No 40
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-48 Score=383.33 Aligned_cols=212 Identities=27% Similarity=0.424 Sum_probs=180.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+++++||+++|+++++|+|+||+|++|++++||||||||||||||+|+|+++|.+|+|.++|.+. .++||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999753 69999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
||.+...+..||+|.+..+-...... +. ....+-++.+.+.|+.+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~----------------------------------~~-~~~~~D~~~v~~aL~~~ 126 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGL----------------------------------FG-RPSKEDEEIVEEALELL 126 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCccccc----------------------------------cc-CCCHhHHHHHHHHHHHh
Confidence 99998888999999876432110000 00 00111234688889999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~ 322 (555)
|+. ++.+|++.+|||||||||.|||||+++|++||||||||+||....-.+.+.++ +.|.|+|+|.||++.+.++
T Consensus 127 ~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 127 GLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred CcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 996 67899999999999999999999999999999999999999999888887764 4689999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++|++|++ +..|...+.+
T Consensus 206 ad~~i~lk~G~i-~a~G~p~evl 227 (258)
T COG1120 206 ADHLILLKDGKI-VAQGTPEEVL 227 (258)
T ss_pred CCEEEEEECCeE-EeecCcchhc
Confidence 999999999997 4567655443
No 41
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=380.51 Aligned_cols=214 Identities=27% Similarity=0.416 Sum_probs=180.2
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------ceEEEEe
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLS 167 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------~~ig~v~ 167 (555)
.+.|+++|++++|++.++|+||||+|++|++++||||||||||||+|+|+|+++|++|+|.+.|.+ .+|||||
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 356999999999986689999999999999999999999999999999999999999999998753 4799999
Q ss_pred ccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 168 QEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 168 Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
|.. ...|..||+|.+..+....... +..... .-.+.+.++|+.
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~----------------------------------~~~~~~-~d~~~v~~aL~~ 126 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGW----------------------------------FRRLNK-KDKEKVDEALER 126 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccc----------------------------------cccccH-HHHHHHHHHHHH
Confidence 965 4446779999886542111000 000111 125678999999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ++.+|.+.+|||||+|||.|||||+++|++|||||||+++|+.++..+.++|+ +.|+|||+||||+..+.++
T Consensus 127 Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 127 VGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred cCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh
Confidence 9997 78899999999999999999999999999999999999999999999988874 3599999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+|+.|+... .+.|+..++..
T Consensus 206 ~D~vi~Ln~~~--~~~G~~~~~~~ 227 (254)
T COG1121 206 FDRVICLNRHL--IASGPPEEVLT 227 (254)
T ss_pred CCEEEEEcCee--EeccChhhccC
Confidence 99999998764 46787766654
No 42
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-47 Score=368.41 Aligned_cols=198 Identities=28% Similarity=0.455 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
+++++||++.|+. ..+|++|||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 3689999999953 369999999999999999999999999999999999999999999999853
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..||||+|++.+.+.+||.||+..+..- . .........+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~---------------~------------------------~~~~~~~~~~ 121 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLI---------------A------------------------GKSAGRRKRA 121 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHH---------------c------------------------CCChhHHHHH
Confidence 2599999999999999999999754210 0 0111134567
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSH 314 (555)
+..+++.+|+.+...+++|.+|||||||||||||||+.+|++||.||||.+||..+.+.+.+++. +.|.|+|||||
T Consensus 122 ~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 78889999998666668899999999999999999999999999999999999999998888774 45899999999
Q ss_pred CHHHHHhhcceeEEecCCeE
Q 008750 315 DRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~ 334 (555)
|...+. .|||++.|++|++
T Consensus 202 d~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 202 DPELAK-YADRVIELKDGKI 220 (226)
T ss_pred CHHHHH-hCCEEEEEeCCee
Confidence 999996 7999999999984
No 43
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-48 Score=394.07 Aligned_cols=213 Identities=29% Similarity=0.446 Sum_probs=186.4
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFL 166 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v 166 (555)
.+.|+++||+++|++..+++||||+|++||+++|+||||||||||||+|+|++.|++|+|.++|.++ .||+|
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 3569999999999999999999999999999999999999999999999999999999999998653 69999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
||+..+||++||.+|+..++.. . ......++.+++.++|+.+
T Consensus 83 FQ~YALFPHltV~~NVafGLk~---------------~-----------------------~~~~~~~i~~rv~e~L~lV 124 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKV---------------R-----------------------KKLKKAEIKARVEEALELV 124 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhh---------------c-----------------------CCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999765420 0 0112234678999999999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~ 322 (555)
++. .+.+|+|++|||||+|||||||||+.+|++||||||.|+||..-+..+...| ++.|.|+|+||||.+++..+
T Consensus 125 ~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~m 203 (352)
T COG3842 125 GLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAM 203 (352)
T ss_pred Cch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhh
Confidence 997 4789999999999999999999999999999999999999998877766544 56799999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+|||++|++|++ ...|...+++..
T Consensus 204 sDrI~Vm~~G~I-~Q~gtP~eiY~~ 227 (352)
T COG3842 204 SDRIAVMNDGRI-EQVGTPEEIYER 227 (352)
T ss_pred ccceEEccCCce-eecCCHHHHhhC
Confidence 999999999997 455666665543
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.4e-45 Score=444.73 Aligned_cols=191 Identities=24% Similarity=0.391 Sum_probs=144.8
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (555)
+++|+|+||+|++|++++|+|+|||||||||++|+|+++|++|+|.++| .|+|++|++.++ +.||+||+..+....
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---~iayv~Q~~~l~-~~Ti~eNI~~g~~~~ 514 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---RISFSPQTSWIM-PGTIKDNIIFGLSYD 514 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---EEEEEeCCCccC-CccHHHHHHhccccc
Confidence 3589999999999999999999999999999999999999999999986 699999999885 469999997542100
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-ccccCCCCCCCChHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv 268 (555)
. .+...+ +.. .. +.+.++.+... .........+|||||||||
T Consensus 515 ~---~~~~~~---~~~---------------------------~~----L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 515 E---YRYTSV---IKA---------------------------CQ----LEEDIALFPEKDKTVLGEGGITLSGGQRARI 557 (1490)
T ss_pred h---HHHHHH---HHH---------------------------Hh----HHHHHHhccccccccccCcCCCcCHHHHHHH
Confidence 0 000000 000 00 11112221110 0112344679999999999
Q ss_pred HHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH-HcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHH
Q 008750 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 269 ~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~-l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
+|||||+.+|+++||||||++||+.+.+.+.+. +.. .++|+|+|||+++.+.. ||+|++|++|++. ..|++++
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~-~~g~~~~ 633 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCY-FYGTFSE 633 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEE-EEcCHHH
Confidence 999999999999999999999999999998874 332 48999999999999975 9999999999863 3444433
No 45
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-48 Score=376.96 Aligned_cols=209 Identities=29% Similarity=0.468 Sum_probs=182.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC---C--------ceEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS---N--------MKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~---~--------~~ig~ 165 (555)
+|.++|+++.|+...+++||||+|+.||.+||+||||||||||||+|+|++.|++|.|.++|. + .+|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 489999999999999999999999999999999999999999999999999999999999986 2 36999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
|+|+..+++++||.+|+..+..-. ....+...+..++.++|+.
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~-------------------------------------~~~p~~~~~r~rv~elL~l 124 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVR-------------------------------------KERPSEAEIRARVEELLRL 124 (345)
T ss_pred EEechhhcccchHHhhhhhccccc-------------------------------------ccCCChhhHHHHHHHHHHH
Confidence 999999999999999997654210 0012334567889999999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~ 321 (555)
+.|. ...+++|.+|||||||||||||||+.+|++||||||+++||...+..|..+| .+.|.|+|+||||.+++.+
T Consensus 125 vqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 125 VQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred hccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 9996 5789999999999999999999999999999999999999998776666655 4579999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+||||++|++|++.. .|+.++.
T Consensus 204 ladrvvvl~~G~Ieq-vg~p~ev 225 (345)
T COG1118 204 LADRVVVLNQGRIEQ-VGPPDEV 225 (345)
T ss_pred hcceEEEecCCeeee-eCCHHHH
Confidence 999999999999744 4554443
No 46
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-47 Score=387.00 Aligned_cols=208 Identities=29% Similarity=0.448 Sum_probs=182.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEe
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~ 167 (555)
..|+++||++.||+..+++||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..|+|||
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 35899999999987669999999999999999999999999999999999999999999999864 3699999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|+..++|++||++|+..+++. ..+...++++++.++.+.++
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~---------------------------------------~~~~k~ei~~rV~eva~~L~ 122 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKL---------------------------------------RGVPKAEIDKRVKEVAKLLG 122 (338)
T ss_pred CCccccCCCcHHHHhhhhhhh---------------------------------------CCCchHHHHHHHHHHHHHcC
Confidence 999999999999999765421 12344567889999999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~ 323 (555)
+. ++++|+|.+|||||||||||||||+.+|+++|||||+|+||...+..+...+ ++.+.|+|+||||..++..++
T Consensus 123 l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla 201 (338)
T COG3839 123 LE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA 201 (338)
T ss_pred Ch-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC
Confidence 97 5779999999999999999999999999999999999999998777666554 457899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++|++|++... |...+.
T Consensus 202 dri~Vm~~G~i~Q~-g~p~el 221 (338)
T COG3839 202 DRIVVMNDGRIQQV-GTPLEL 221 (338)
T ss_pred CEEEEEeCCeeeec-CChHHH
Confidence 99999999987544 444433
No 47
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.4e-47 Score=348.51 Aligned_cols=202 Identities=28% Similarity=0.484 Sum_probs=180.0
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------e
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------K 162 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------------~ 162 (555)
+|+++||++.|+ +.++|+||||+|++||++-|+||||||||||+|+|++..+|++|+|.++|.+. +
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 589999999995 45699999999999999999999999999999999999999999999998653 6
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
||+|+||+.+.+..||+||+..++. + ......++.+++.++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~----v-----------------------------------~G~~~~~i~~rV~~~ 121 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLR----V-----------------------------------IGKPPREIRRRVSEV 121 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhh----c-----------------------------------cCCCHHHHHHHHHHH
Confidence 9999999999999999999976531 0 123455678899999
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l 319 (555)
|+.+||. +..+..|.+|||||||||+||||++.+|++||.||||-+|||.....+.+++ .+.|.||||.|||.+.+
T Consensus 122 L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 122 LDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred HHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 9999996 4667888999999999999999999999999999999999999888777765 45799999999999999
Q ss_pred HhhcceeEEecCCeEeecc
Q 008750 320 DQLCTKIVETEMGVSRTYE 338 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~ 338 (555)
+++-.|++.|++|++..+.
T Consensus 201 ~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 201 NRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HhccCcEEEEeCCEEEecc
Confidence 9999999999999986554
No 48
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-47 Score=358.54 Aligned_cols=215 Identities=24% Similarity=0.404 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------c
Q 008750 96 SGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (555)
Q Consensus 96 ~~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~ 161 (555)
.+|+++||++.| +++.+|+||||+|++||+++|||+||||||||||+|+|+.+|++|+|.++|.+ .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 469999999999 67889999999999999999999999999999999999999999999999853 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
+|||++|.+.+.+..+|.+|++.+......... ..+ .+...+-...+.+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~------------------------------slf-glfsk~dk~~Al~ 130 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWR------------------------------SLF-GLFSKEDKAQALD 130 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHH------------------------------HHh-CCCCHHHHHHHHH
Confidence 599999999999999999999765322111110 000 1122233456778
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
.|+++|+. +.+..+..+|||||+|||+|||||+++|+++|.|||+++|||.+.+.+++.|+ +.|.|+|+..|+++
T Consensus 131 aLervgi~-~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 131 ALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHcCcH-HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 89999996 45667789999999999999999999999999999999999999998888875 46999999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
.+.++||||+-|++|++ +|+|+.++
T Consensus 210 lA~~Y~~Riigl~~G~i-vfDg~~~e 234 (258)
T COG3638 210 LAKKYADRIIGLKAGRI-VFDGPASE 234 (258)
T ss_pred HHHHHHhhheEecCCcE-EEeCChhh
Confidence 99999999999999996 78998766
No 49
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-46 Score=365.99 Aligned_cols=210 Identities=28% Similarity=0.442 Sum_probs=183.5
Q ss_pred ccEEEEeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
+++.++|++|+|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.+ .+|
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468999999999765 89999999999999999999999999999999999999999999998864 259
Q ss_pred EEEecccccC-cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 164 AFLSQEFEVS-MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 164 g~v~Q~~~~~-~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|||+|+|..+ +..||.+.+..+..+ ..++..++++++.++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n---------------------------------------~g~~~~e~~~rv~~~ 122 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLEN---------------------------------------LGLPREEIEERVAEA 122 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhh---------------------------------------cCCCHHHHHHHHHHH
Confidence 9999999655 567999987654321 123344578899999
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
+..+|+.. ..++++.+|||||||||+||.+|+.+|++|||||||++||+.+++.+.+++++ .|.|+|++|||+++
T Consensus 123 l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 123 LELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHHcCchh-hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 99999974 58999999999999999999999999999999999999999999999988753 36899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+..+||++++|++|++ .++|...++..
T Consensus 202 ~~~~ad~v~vl~~G~i-~~~g~p~~i~~ 228 (235)
T COG1122 202 VLEYADRVVVLDDGKI-LADGDPAEIFN 228 (235)
T ss_pred HHhhCCEEEEEECCEE-eecCCHHHHhh
Confidence 9999999999999997 67787655443
No 50
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.7e-45 Score=436.94 Aligned_cols=199 Identities=19% Similarity=0.166 Sum_probs=155.8
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC----CCCceEEEEcCCCc---------eEEEEecccccCcCc
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKSNM---------KIAFLSQEFEVSMSR 176 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~----~p~~G~I~~~g~~~---------~ig~v~Q~~~~~~~~ 176 (555)
+++|+|||++|++||+++|+|+||||||||||+|+|+. .|++|+|.++|.+. .++|++|+..+++.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46999999999999999999999999999999999986 57999999998532 389999998888899
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH-HHHHHHhhhcCCCccccC-
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD-AKVSKLMPELGFTADDGD- 254 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~lgl~~~~~~- 254 (555)
||+|++..+.. +.. .... . ......+.. ..++.+++.+||.+ ..+
T Consensus 154 TV~E~l~f~~~---------------~~~-~~~~--~--------------~~~~~~~~~~~~~~~~l~~lgL~~-~~~t 200 (1394)
T TIGR00956 154 TVGETLDFAAR---------------CKT-PQNR--P--------------DGVSREEYAKHIADVYMATYGLSH-TRNT 200 (1394)
T ss_pred CHHHHHHHHHH---------------hCC-CCCC--C--------------CCCCHHHHHHHHHHHHHHHcCccc-ccCc
Confidence 99999864311 000 0000 0 000011111 22456788899964 333
Q ss_pred ----CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH-HHHHhhcce
Q 008750 255 ----RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTK 325 (555)
Q Consensus 255 ----~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~-~~l~~~~dr 325 (555)
..+..|||||||||+||++|+.+|+||+|||||++||+.+...+.+.|++ .|.|+|+++|++ +.+.+++|+
T Consensus 201 ~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~ 280 (1394)
T TIGR00956 201 KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDK 280 (1394)
T ss_pred eeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Confidence 34678999999999999999999999999999999999999998887753 489999999996 788889999
Q ss_pred eEEecCCeEeeccCChH
Q 008750 326 IVETEMGVSRTYEGNYS 342 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~ 342 (555)
|++|++|++ .|.|+.+
T Consensus 281 v~~L~~G~i-v~~G~~~ 296 (1394)
T TIGR00956 281 VIVLYEGYQ-IYFGPAD 296 (1394)
T ss_pred EEEEeCCeE-EEECCHH
Confidence 999999986 3555443
No 51
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.4e-46 Score=384.72 Aligned_cols=208 Identities=27% Similarity=0.461 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
+|+++||+++|++ .++|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4899999999952 4799999999999999999999999999999999999999999999998532
Q ss_pred --eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 --~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
+|||+||++.+++..||.+|+..+... ......+..+++
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v 121 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEIKRKV 121 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHH
Confidence 599999999998889999998643110 001122345678
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++|++ .|.|||+||||
T Consensus 122 ~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 122 TELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8899999996 567899999999999999999999999999999999999999999999888754 48999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++++.++||+|++|++|++. ..|+..++.
T Consensus 201 ~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~ 229 (343)
T TIGR02314 201 MDVVKRICDCVAVISNGELI-EQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999974 567776654
No 52
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.1e-45 Score=379.14 Aligned_cols=209 Identities=27% Similarity=0.436 Sum_probs=180.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~ 165 (555)
.++|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..|||
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 356999999999998889999999999999999999999999999999999999999999998864 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
+||++.+++.+||+||+..... + ......+...++.++++.
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~ 125 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGR---------------Y------------------------FGLSAAAARALVPPLLEF 125 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHH
Confidence 9999998888999999753110 0 001112234567788889
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++.+++++|++ .|.|||++||+++++..+
T Consensus 126 ~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~ 204 (306)
T PRK13537 126 AKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL 204 (306)
T ss_pred cCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 9996 467889999999999999999999999999999999999999999999998754 589999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||||++|++|++ .+.|+.+++
T Consensus 205 ~d~i~il~~G~i-~~~g~~~~l 225 (306)
T PRK13537 205 CDRLCVIEEGRK-IAEGAPHAL 225 (306)
T ss_pred CCEEEEEECCEE-EEECCHHHH
Confidence 999999999997 466776554
No 53
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-45 Score=364.73 Aligned_cols=208 Identities=28% Similarity=0.430 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ceEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKIA 164 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~ig 164 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 478999999988889999999999999999999999999999999999999999999998742 2489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+...... .. .........++.++++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~---------------~~-----------------------~~~~~~~~~~~~~~l~ 122 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLRE---------------HT-----------------------RLSEEEIREIVLEKLE 122 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhh---------------cc-----------------------CCCHHHHHHHHHHHHH
Confidence 999999887888999998532100 00 0011123446777889
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++.
T Consensus 123 ~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 123 AVGLR-GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 99996 456889999999999999999999999999999999999999999999988754 4899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++ .+.|+++++.
T Consensus 202 ~~~d~v~~l~~G~i-~~~g~~~~~~ 225 (235)
T cd03261 202 AIADRIAVLYDGKI-VAEGTPEELR 225 (235)
T ss_pred HhcCEEEEEECCeE-EEecCHHHHc
Confidence 99999999999987 4567766543
No 54
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.5e-45 Score=360.24 Aligned_cols=197 Identities=26% Similarity=0.452 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------
Q 008750 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------- 161 (555)
+|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4789999999964 4699999999999999999999999999999999999999999999987532
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.++|++|++.+++..||.+|+...... . ....+....++.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~ 121 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRI---------------I------------------------GVPPRDANERVSA 121 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHH
Confidence 489999999887888999998532100 0 0011123456778
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||+++
T Consensus 122 ~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 122 ALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 89999996 456888999999999999999999999999999999999999999999988754 48999999999999
Q ss_pred HHhhcceeEEecCCe
Q 008750 319 LDQLCTKIVETEMGV 333 (555)
Q Consensus 319 l~~~~dri~~l~~G~ 333 (555)
+..+||+|++|++|+
T Consensus 201 ~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 201 VETYRHRTLTLSRGR 215 (216)
T ss_pred HHHhCCEEEEEeCCc
Confidence 999999999999986
No 55
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-46 Score=344.31 Aligned_cols=208 Identities=30% Similarity=0.481 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCce-eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEE
Q 008750 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v 166 (555)
+|++.+++++|+... +++||||++++||++||+|+|||||||+||+|++++.|++|.|.++|.+. +||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 589999999998865 99999999999999999999999999999999999999999999998653 69999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+-+..++..+|++||+..... ...+...++++++.++.+.+
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~---------------------------------------L~~l~~~~~kari~~l~k~l 121 (245)
T COG4555 81 FGERGLYARLTARENLKYFAR---------------------------------------LNGLSRKEIKARIAELSKRL 121 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHH---------------------------------------HhhhhhhHHHHHHHHHHHHh
Confidence 988888899999999864210 01234456788899999999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~~~ 323 (555)
++. +..++.+..||-|+||||+|||||+++|++++|||||||||..+...+.+++ ++.|.+||+.||+++++..+|
T Consensus 122 ~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC 200 (245)
T COG4555 122 QLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred ChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh
Confidence 996 5779999999999999999999999999999999999999999999888876 456999999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||++|++|.+ ++.|+..+..
T Consensus 201 Drvivlh~Gev-v~~gs~~~l~ 221 (245)
T COG4555 201 DRVIVLHKGEV-VLEGSIEALD 221 (245)
T ss_pred heEEEEecCcE-EEcCCHHHHH
Confidence 99999999986 6788766543
No 56
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-45 Score=382.72 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=180.9
Q ss_pred cEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEe
Q 008750 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~ 167 (555)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 77889999999999999999999999999999999999999999999999853 2599999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++++||.+|+..+... ......+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~g 123 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKI---------------------------------------RGMPKAEIEERVAEAARILE 123 (356)
T ss_pred CCccccCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00112233456788999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~ 323 (555)
+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.|.|+|+||||++++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~ 202 (356)
T PRK11650 124 LE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLA 202 (356)
T ss_pred Ch-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 96 57899999999999999999999999999999999999999999998887764 35899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|...+++
T Consensus 203 D~i~vl~~G~i~-~~g~~~~~~ 223 (356)
T PRK11650 203 DRVVVMNGGVAE-QIGTPVEVY 223 (356)
T ss_pred CEEEEEeCCEEE-EECCHHHHH
Confidence 999999999974 557766554
No 57
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-45 Score=380.84 Aligned_cols=210 Identities=24% Similarity=0.385 Sum_probs=182.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v 166 (555)
.++|+++||++.|++..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.+ ..||||
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 356999999999998889999999999999999999999999999999999999999999999853 369999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++++||.+|+..+... ......+...++.++++.+
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 124 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKM---------------------------------------LGVPKEERKQRVKEALELV 124 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhH---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999999999999998653210 0011223456788899999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~ 322 (555)
|+. .+.++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.+.|+|+||||++++..+
T Consensus 125 gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 125 DLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 996 46799999999999999999999999999999999999999999999888764 3589999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+|++|++|++. ..|+.++++
T Consensus 204 aD~i~vm~~G~i~-~~g~~~~~~ 225 (351)
T PRK11432 204 SDTVIVMNKGKIM-QIGSPQELY 225 (351)
T ss_pred CCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999975 456665543
No 58
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-45 Score=357.95 Aligned_cols=198 Identities=32% Similarity=0.470 Sum_probs=170.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 478999999988889999999999999999999999999999999999999999999998753 259999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...... . .........++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03259 81 YALFPHLTVAENIAFGLKL---------------R------------------------GVPKAEIRARVRELLELVGLE 121 (213)
T ss_pred hhhccCCcHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 9887888999998532100 0 000111234567788899996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+||+
T Consensus 122 -~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 122 -GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred -hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 456888999999999999999999999999999999999999999999998754 488999999999999999999
Q ss_pred eEEecCCeEe
Q 008750 326 IVETEMGVSR 335 (555)
Q Consensus 326 i~~l~~G~~~ 335 (555)
|++|++|++.
T Consensus 201 v~~l~~G~i~ 210 (213)
T cd03259 201 IAVMNEGRIV 210 (213)
T ss_pred EEEEECCEEE
Confidence 9999999874
No 59
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4e-45 Score=381.05 Aligned_cols=209 Identities=29% Similarity=0.454 Sum_probs=181.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEe
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~ 167 (555)
.+|+++||+++|++..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.+ ..|||++
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 45999999999998889999999999999999999999999999999999999999999999853 2599999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++++||.+|+..+... ...+..+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~l~ 123 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKN---------------------------------------RGMGRAEVAERVAELLDLVG 123 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00112234567888999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~ 323 (555)
|. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.+.|+|+||||++++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 124 LP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMA 202 (353)
T ss_pred CC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 96 47799999999999999999999999999999999999999999999888774 35899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|+..+++
T Consensus 203 d~i~vl~~G~i~-~~g~~~~~~ 223 (353)
T TIGR03265 203 DRIVVMNHGVIE-QVGTPQEIY 223 (353)
T ss_pred CEEEEEECCEEE-EEcCHHHHH
Confidence 999999999974 456655544
No 60
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.7e-45 Score=388.41 Aligned_cols=242 Identities=24% Similarity=0.370 Sum_probs=203.1
Q ss_pred hhHHHHhccCcchhhhhhcccccCCCCCC----------CCCccEEEEeEEEEeCC-----------ceeeeeeeEEEEC
Q 008750 64 SDVESLFSSSADEFENKKYSNKQSNTGAS----------SISSGVKLENISKSYKG-----------VTVLKDVTWEVKK 122 (555)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~l~nls~~y~~-----------~~vL~~vsl~i~~ 122 (555)
+..++||..|.++|++......|...... ...+.++++||++.|.. ..+++||||+|.+
T Consensus 237 G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~ 316 (539)
T COG1123 237 GPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLRE 316 (539)
T ss_pred cCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecC
Confidence 78899999999999999877765542211 15678999999999962 2589999999999
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------ceEEEEecccc--cCcCccHHHHHHHhhHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAFLSQEFE--VSMSRTVREEFMSAFKE 188 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~ 188 (555)
||++||||+||||||||.|+|+|+++|++|+|.++|.+ .++-+++|+|+ +.+.+||.+++..++.-
T Consensus 317 GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~ 396 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRI 396 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhh
Confidence 99999999999999999999999999999999998864 25788899874 66888999987644210
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHH
Q 008750 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (555)
. ......+..+++.++++.+|++...++|+|++|||||||||
T Consensus 397 ~--------------------------------------~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRv 438 (539)
T COG1123 397 H--------------------------------------GGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRV 438 (539)
T ss_pred h--------------------------------------cccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHH
Confidence 0 00112334567899999999998889999999999999999
Q ss_pred HHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 269 ~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+|||||+.+|++||+|||||+||+.....+.++|+ +.|.|+||||||+.++.++||||++|.+|+++.. |+-++.
T Consensus 439 aIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~~v 517 (539)
T COG1123 439 AIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTEKV 517 (539)
T ss_pred HHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHHHH
Confidence 99999999999999999999999998888887764 4699999999999999999999999999998654 554433
No 61
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=6.3e-45 Score=377.76 Aligned_cols=210 Identities=28% Similarity=0.441 Sum_probs=180.0
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEE
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIA 164 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig 164 (555)
...+|+++||+++|+++.+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 3457999999999998899999999999999999999999999999999999999999999999854 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|+||++.+++.+|+.||+..... +. .....+...++.++++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~ll~ 158 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGR---------------YF------------------------GMSTREIEAVIPSLLE 158 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHH
Confidence 99999998889999999753100 00 0011122345667888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~ 321 (555)
.+|++ ...++++.+|||||||||+||+||+.+|++|||||||++||+.++.+++++|++ .|.|||++||+++++.+
T Consensus 159 ~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 159 FARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER 237 (340)
T ss_pred HcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 89986 457889999999999999999999999999999999999999999999998754 58999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+||+|++|++|++ .+.|..+++
T Consensus 238 ~~d~i~il~~G~i-~~~g~~~~l 259 (340)
T PRK13536 238 LCDRLCVLEAGRK-IAEGRPHAL 259 (340)
T ss_pred hCCEEEEEECCEE-EEEcCHHHH
Confidence 9999999999987 466766554
No 62
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.9e-45 Score=370.27 Aligned_cols=207 Identities=30% Similarity=0.506 Sum_probs=179.3
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEE
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v 166 (555)
.++++||++.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.++|.+ .+|||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 478999999999 6999999999999999999999999999999999999999999999999843 259999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
||++.+++.+|++|++..... +. ........++++++++.+
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~---------------l~------------------------~~~~~~~~~~~~~~l~~~ 124 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFAR---------------LY------------------------GLSKEEAEERIEELLELF 124 (293)
T ss_pred ccCCCCCccccHHHHHHHHHH---------------Hh------------------------CCChhHHHHHHHHHHHHc
Confidence 999999999999999753210 00 011123456789999999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CC-ceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD-VPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~-~tvIiiSHd~~~l~~~ 322 (555)
||+. ..++++.+||+|||||+.||.||+.+|++|||||||+|||+.++..+.++|++ .+ .|||++||.++.+..+
T Consensus 125 ~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 125 GLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred CCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh
Confidence 9986 44788999999999999999999999999999999999999999999998753 45 7999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||+|++|++|++ .+.|...++
T Consensus 204 ~d~v~il~~G~~-~~~g~~~~l 224 (293)
T COG1131 204 CDRVIILNDGKI-IAEGTPEEL 224 (293)
T ss_pred CCEEEEEeCCEE-EEeCCHHHH
Confidence 999999999997 455665553
No 63
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-45 Score=355.92 Aligned_cols=203 Identities=29% Similarity=0.485 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~Q 168 (555)
|+++|++++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 578999999988889999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..||.+|+..... .. .........++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03265 81 DLSVDDELTGWENLYIHAR---------------LY------------------------GVPGAERRERIDELLDFVGL 121 (220)
T ss_pred CccccccCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 9988788899998753210 00 00111234567788999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+||||++++..+||
T Consensus 122 ~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 122 L-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred H-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 456889999999999999999999999999999999999999999999887753 48899999999999999999
Q ss_pred eeEEecCCeEeeccCCh
Q 008750 325 KIVETEMGVSRTYEGNY 341 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y 341 (555)
+|++|++|++. ..|+.
T Consensus 201 ~i~~l~~G~i~-~~~~~ 216 (220)
T cd03265 201 RVAIIDHGRII-AEGTP 216 (220)
T ss_pred EEEEEeCCEEE-EeCCh
Confidence 99999999975 34443
No 64
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.6e-45 Score=372.63 Aligned_cols=208 Identities=28% Similarity=0.432 Sum_probs=177.1
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v 166 (555)
.+|+++||+++|++.++|+||||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..+||+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 45899999999998889999999999999999999999999999999999999999999998753 359999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..||.+|+..... .. .........++.++++.+
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~ll~~~ 123 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGR---------------YF------------------------GMSTREIEAVIPSLLEFA 123 (303)
T ss_pred eccccCCcCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHC
Confidence 999988888999999752100 00 001112234566778888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+|
T Consensus 124 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~ 202 (303)
T TIGR01288 124 RLE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLC 202 (303)
T ss_pred CCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 986 456888999999999999999999999999999999999999999999998754 4899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|+|++|++|++ .+.|+.++.
T Consensus 203 d~i~~l~~G~i-~~~g~~~~~ 222 (303)
T TIGR01288 203 DRLCVLESGRK-IAEGRPHAL 222 (303)
T ss_pred CEEEEEECCEE-EEEcCHHHH
Confidence 99999999997 456765543
No 65
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.8e-44 Score=378.16 Aligned_cols=212 Identities=27% Similarity=0.407 Sum_probs=182.9
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEE
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIA 164 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig 164 (555)
...++|+++||+++|++.++|+|+||+|++||+++|+|+|||||||||++|+|+++|++|+|.++|.+ ..||
T Consensus 10 ~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred cCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 34567999999999998889999999999999999999999999999999999999999999999854 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++++||.+|+..++.. ......+...++.++++
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~~~~~l~ 130 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRM---------------------------------------QKTPAAEITPRVMEALR 130 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhh---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999999999999999998643210 00111233456788899
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||...+..+.+.|+ +.+.|+|+||||++++.
T Consensus 131 ~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~ 209 (375)
T PRK09452 131 MVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEAL 209 (375)
T ss_pred HcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99996 57799999999999999999999999999999999999999999999888774 35899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. ..|...+++
T Consensus 210 ~laDri~vl~~G~i~-~~g~~~~i~ 233 (375)
T PRK09452 210 TMSDRIVVMRDGRIE-QDGTPREIY 233 (375)
T ss_pred HhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999975 456665544
No 66
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-43 Score=405.27 Aligned_cols=256 Identities=22% Similarity=0.346 Sum_probs=188.4
Q ss_pred hhhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEEC
Q 008750 46 TCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKK 122 (555)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~ 122 (555)
..++...+.-..+..++..+++|+-+....+......... .........++++|.+++.+. .+.|+||||+|++
T Consensus 470 r~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 470 RFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecC
Confidence 3466666666777888888888877765544322221111 111234566999999999854 3499999999999
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~ 202 (555)
|+.+||||+-|||||+||.+|.|.++..+|+|.++| .++|+||.|.+ ++.||+||++.+...+.+. .+++
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---siaYv~Q~pWI-~ngTvreNILFG~~~d~~r---Y~~V--- 616 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---SVAYVPQQPWI-QNGTVRENILFGSPYDEER---YDKV--- 616 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---eEEEeccccHh-hCCcHHHhhhcCccccHHH---HHHH---
Confidence 999999999999999999999999999999999987 49999999988 7899999998653211111 1111
Q ss_pred HhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 008750 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282 (555)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLl 282 (555)
++... ++..+ ++|..-+. .+..+|. -+|||||||||+||||+.+++||+|
T Consensus 617 i~aC~---------------------------L~~Dl-e~Lp~GD~-TeIGErG-inLSGGQKqRIsLARAVY~~adIYL 666 (1381)
T KOG0054|consen 617 IKACA---------------------------LKKDL-EILPFGDL-TEIGERG-INLSGGQKQRISLARAVYQDADIYL 666 (1381)
T ss_pred HHHcc---------------------------CHhHH-hhcCCCCc-ceecCCc-cCCcHhHHHHHHHHHHHhccCCEEE
Confidence 11100 00000 01111111 1223444 4899999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHH-HcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 283 LDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 283 LDEPTs~LD~~~~~~l~~~-l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||.|.|++|...-.++.+. ++. .++|+|+|||.++++.+ ||.|++|++|++ ...|+|++...
T Consensus 667 LDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I-~~~Gty~el~~ 731 (1381)
T KOG0054|consen 667 LDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKI-VESGTYEELLK 731 (1381)
T ss_pred EcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeE-ecccCHHHHHh
Confidence 9999999999988777664 332 47999999999999975 999999999997 57899998874
No 67
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-44 Score=377.33 Aligned_cols=211 Identities=24% Similarity=0.413 Sum_probs=181.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEE
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAF 165 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~ 165 (555)
..++|+++||+++|++..+|+|+||+|++||+++|+|+|||||||||++|+|+++|++|+|.++|.+. .|||
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35679999999999888899999999999999999999999999999999999999999999998542 5999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++++||.||+..++.. ......+..+++.++++.
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 136 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQ---------------------------------------DKLPKAEIASRVNEMLGL 136 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 001122345577888999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~ 321 (555)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.+.| ++.|.|+|+||||++++..
T Consensus 137 l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~ 215 (377)
T PRK11607 137 VHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMT 215 (377)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 9996 5678999999999999999999999999999999999999999998877544 4568999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||+|++|++|++. ..|...+++
T Consensus 216 laDri~vl~~G~i~-~~g~~~~~~ 238 (377)
T PRK11607 216 MAGRIAIMNRGKFV-QIGEPEEIY 238 (377)
T ss_pred hCCEEEEEeCCEEE-EEcCHHHHH
Confidence 99999999999875 456665544
No 68
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.7e-44 Score=376.99 Aligned_cols=209 Identities=25% Similarity=0.412 Sum_probs=181.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc--eEEEEcCCC--------ceEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS--GNVIKAKSN--------MKIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~--G~I~~~g~~--------~~ig~v 166 (555)
.|+++||+++|++..+|+|+||+|.+||+++|+|||||||||||++|+|+++|++ |+|.++|.+ ..|||+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 3899999999998889999999999999999999999999999999999999999 999998853 259999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++.+||++|+..++.. ......+...++.++++.+
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 125 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRA---------------------------------------QKMPKADIAERVADALKLV 125 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998643210 0011223456788899999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CC-CceEEEEecCHHHHHh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ-DVPMVIISHDRAFLDQ 321 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~-~~tvIiiSHd~~~l~~ 321 (555)
||. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +. |.|+|+||||++++..
T Consensus 126 gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~ 204 (362)
T TIGR03258 126 GLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT 204 (362)
T ss_pred CCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 996 56799999999999999999999999999999999999999999999988764 23 7899999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+||+|++|++|++. ..|...+++.
T Consensus 205 l~dri~vl~~G~i~-~~g~~~~~~~ 228 (362)
T TIGR03258 205 LADKAGIMKDGRLA-AHGEPQALYD 228 (362)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999974 5677665543
No 69
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=378.55 Aligned_cols=208 Identities=26% Similarity=0.420 Sum_probs=179.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
.|+++||+++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 4899999999998889999999999999999999999999999999999999999999998753 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||.+|+...... . .....+...++.++++.+|+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~lgL 123 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKL---------------A------------------------GAKKEEINQRVNQVAEVLQL 123 (369)
T ss_pred CcccCCCCCHHHHHHhHHhh---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99998899999998643210 0 01112234567888999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||++++..+||
T Consensus 124 ~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred h-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence 6 567899999999999999999999999999999999999999999988877643 48999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|+..++.
T Consensus 203 ~i~vl~~G~i~-~~g~~~~i~ 222 (369)
T PRK11000 203 KIVVLDAGRVA-QVGKPLELY 222 (369)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999974 456665543
No 70
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.7e-44 Score=351.92 Aligned_cols=199 Identities=30% Similarity=0.462 Sum_probs=171.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 478999999988889999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...... . ....+....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKL---------------R------------------------KVPKDEIDERVREVAELLQIE 121 (213)
T ss_pred hhhccCCCHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999997532100 0 001112344567788889986
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||||++++..+||+
T Consensus 122 -~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 122 -HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred -HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 456889999999999999999999999999999999999999999999988753 489999999999999999999
Q ss_pred eEEecCCeEee
Q 008750 326 IVETEMGVSRT 336 (555)
Q Consensus 326 i~~l~~G~~~~ 336 (555)
|++|++|+++.
T Consensus 201 i~~l~~g~~~~ 211 (213)
T cd03301 201 IAVMNDGQIQQ 211 (213)
T ss_pred EEEEECCEEEe
Confidence 99999998754
No 71
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.9e-44 Score=374.68 Aligned_cols=212 Identities=29% Similarity=0.437 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
.|+++||+++|++.++|+|+||+|.+||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4899999999998889999999999999999999999999999999999999999999999854 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||.+|+..+.... .. .......+..+++.++++.+|+
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~--------------~~---------------------~~~~~~~~~~~~~~~~l~~~~L 126 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVL--------------PR---------------------RERPNAAAIKAKVTQLLEMVQL 126 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhc--------------cc---------------------ccCCCHHHHHHHHHHHHHHcCC
Confidence 999989999999986432100 00 0001112345678889999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+ +.+.|+|+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 127 A-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred c-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 56789999999999999999999999999999999999999999988887764 348999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|...+++
T Consensus 206 ri~vl~~G~i~-~~g~~~~i~ 225 (353)
T PRK10851 206 RVVVMSQGNIE-QAGTPDQVW 225 (353)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999974 557766554
No 72
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.4e-44 Score=363.31 Aligned_cols=211 Identities=21% Similarity=0.320 Sum_probs=178.0
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------c
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~ 161 (555)
+++|+++||+++|+++++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 457999999999998889999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.++|++|++.+++..||.+|+...+... . .........++.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~~~~~ 126 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREH---------------T-----------------------QLPAPLLHSTVMM 126 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHc---------------c-----------------------CCCHHHHHHHHHH
Confidence 4899999998877889999985421100 0 0001112345667
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++
T Consensus 127 ~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 127 KLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 88889996 467888999999999999999999999999999999999999999998887753 3789999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++..+||+|++|++|++. +.|..+++.
T Consensus 206 ~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 206 EVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred HHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999874 567666543
No 73
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-44 Score=350.87 Aligned_cols=192 Identities=31% Similarity=0.554 Sum_probs=166.2
Q ss_pred EEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEEEEeccc
Q 008750 99 KLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQEF 170 (555)
Q Consensus 99 ~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig~v~Q~~ 170 (555)
+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999987 7899999999999999999999999999999999999999999999998653 599999997
Q ss_pred cc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 171 EV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 171 ~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
.. ++..|+.||+...... . .....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~--~~~~~~~~~~l~~~~l~ 117 (205)
T cd03226 81 DYQLFTDSVREELLLGLKE-----------------------------------------L--DAGNEQAETVLKDLDLY 117 (205)
T ss_pred hhhhhhccHHHHHhhhhhh-----------------------------------------c--CccHHHHHHHHHHcCCc
Confidence 43 3567999987532100 0 01124567788999996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|++|||++++..+||+|
T Consensus 118 -~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 118 -ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred -hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 457889999999999999999999999999999999999999999999988753 4889999999999999999999
Q ss_pred EEecCCeE
Q 008750 327 VETEMGVS 334 (555)
Q Consensus 327 ~~l~~G~~ 334 (555)
++|++|++
T Consensus 197 ~~l~~G~i 204 (205)
T cd03226 197 LLLANGAI 204 (205)
T ss_pred EEEECCEE
Confidence 99999975
No 74
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.4e-44 Score=402.53 Aligned_cols=252 Identities=24% Similarity=0.396 Sum_probs=195.4
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc--eeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV--TVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~--~vL~~vsl~i~~Ge~ 125 (555)
+++.....+++++.+..-++++++.|.|....+.....+ ...+.|+++||+|+|+.. ++|+|+||+|++||+
T Consensus 428 ~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~------~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~ 501 (709)
T COG2274 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLP------KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEK 501 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccc------ccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCE
Confidence 556666667777788888888899888765433222223 334559999999999654 699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHH----HHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EME 191 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~----~~~ 191 (555)
+||||+||||||||+|+|+|+++|++|+|.+||.+. .||||+|++.+ |+.|++||+..+..+ +..
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L-f~gSI~eNi~l~~p~~~~e~i~ 580 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL-FSGSIRENIALGNPEATDEEII 580 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchh-hcCcHHHHHhcCCCCCCHHHHH
Confidence 999999999999999999999999999999999763 69999999877 789999999764311 111
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHH
Q 008750 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (555)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lA 271 (555)
.+.....+ .+.+..+- +|++.... ..-..||||||||++||
T Consensus 581 ~A~~~ag~------------------------------------~~fI~~lP--~gy~t~v~-E~G~~LSGGQrQrlalA 621 (709)
T COG2274 581 EAAQLAGA------------------------------------HEFIENLP--MGYDTPVG-EGGANLSGGQRQRLALA 621 (709)
T ss_pred HHHHHhCc------------------------------------HHHHHhcc--cccccccc-cCCCCCCHHHHHHHHHH
Confidence 11111111 11111111 13322222 22358999999999999
Q ss_pred HHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||+.+|+|||||||||+||+.+++.+.+.|.+ .|+|+|+|||+++.+. .||||++|++|++ ..+|+.++.+..
T Consensus 622 RaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gki-v~~gs~~ell~~ 697 (709)
T COG2274 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKI-VEQGSHEELLAQ 697 (709)
T ss_pred HHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCce-eccCCHHHHHHh
Confidence 999999999999999999999999999999876 4699999999999996 5999999999997 567887776654
No 75
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-44 Score=357.00 Aligned_cols=211 Identities=28% Similarity=0.443 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
.|+++||+++|+++++|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4899999999988889999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..||.+|+...... .... ..........++.++++.+|+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~---------------~~~~--------------------~~~~~~~~~~~~~~~l~~~~l 126 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRV---------------KPRS--------------------ERPPEAEIRAKVHELLKLVQL 126 (239)
T ss_pred CCcccCCCCHHHHHhhhhhh---------------cccc--------------------ccCCHHHHHHHHHHHHHHcCC
Confidence 99887788999998532100 0000 000011123456778888998
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+ .|.|||+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 127 D-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred h-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 6 456888999999999999999999999999999999999999999999988753 37899999999999999999
Q ss_pred eeEEecCCeEeeccCChHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~ 344 (555)
+|++|++|++. ..|..+++
T Consensus 206 ~i~~l~~G~i~-~~~~~~~~ 224 (239)
T cd03296 206 RVVVMNKGRIE-QVGTPDEV 224 (239)
T ss_pred EEEEEECCeEE-EecCHHHH
Confidence 99999999874 45665543
No 76
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.6e-44 Score=353.44 Aligned_cols=195 Identities=30% Similarity=0.492 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------- 160 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999976 689999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++..||.+|+...... . .......++++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLL---------------A------------------------GVPKKERRERA 121 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhh---------------c------------------------CCCHHHHHHHH
Confidence 2599999999887888999997532100 0 00011223467
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+.. ..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||
T Consensus 122 ~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 122 EELLERVGLGD-RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 78889999963 45888999999999999999999999999999999999999999999988753 47899999999
Q ss_pred HHHHHhhcceeEEecCCe
Q 008750 316 RAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~ 333 (555)
++++. +||+|++|++|+
T Consensus 201 ~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 201 PELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHh-hhcEEEEeeCCc
Confidence 99997 999999999986
No 77
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-44 Score=351.97 Aligned_cols=198 Identities=31% Similarity=0.429 Sum_probs=169.7
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEec
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q 168 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999987 789999999999999999999999999999999999999999999998854 36999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+...... . ....+....++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03293 81 QDALLPWLTVLDNVALGLEL---------------Q------------------------GVPKAEARERAEELLELVGL 121 (220)
T ss_pred ccccccCCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99887778999997532100 0 00111223457778899999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||
T Consensus 122 ~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 122 S-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred h-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 6 456888999999999999999999999999999999999999999999988753 47899999999999999999
Q ss_pred eeEEec--CCeEe
Q 008750 325 KIVETE--MGVSR 335 (555)
Q Consensus 325 ri~~l~--~G~~~ 335 (555)
+|++|+ +|++.
T Consensus 201 ~i~~l~~~~G~i~ 213 (220)
T cd03293 201 RVVVLSARPGRIV 213 (220)
T ss_pred EEEEEECCCCEEE
Confidence 999999 68863
No 78
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.3e-44 Score=351.22 Aligned_cols=197 Identities=29% Similarity=0.504 Sum_probs=169.2
Q ss_pred cEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ce
Q 008750 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~ 162 (555)
+|+++|++++| +++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 47899999999 46789999999999999999999999999999999999999999999998743 25
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++..|+.+|+...... . .......+.++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 121 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEV---------------R------------------------GKKEREIQRRVGAA 121 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHH
Confidence 89999999887788999997532100 0 00111224467788
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 122 LRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8999996 456888999999999999999999999999999999999999999999988754 589999999999999
Q ss_pred HhhcceeEEecCCe
Q 008750 320 DQLCTKIVETEMGV 333 (555)
Q Consensus 320 ~~~~dri~~l~~G~ 333 (555)
..+||+|++|++|+
T Consensus 201 ~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 201 DRVAHRVIILDDGR 214 (214)
T ss_pred HHhcCEEEEecCCC
Confidence 99999999999874
No 79
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.6e-44 Score=366.79 Aligned_cols=207 Identities=25% Similarity=0.492 Sum_probs=179.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
.++++|++++|+++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .+||+|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 38999999999988899999999999999999999999999999999999999999999988542 599999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++.+|+.||+..... + ..........++.++++.+|
T Consensus 82 q~~~l~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~g 122 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAG---------------I------------------------YGMKGQLLKQRVEEMIELVG 122 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHCC
Confidence 99998888999999753110 0 00111223456778899999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcce
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dr 325 (555)
+.+ ..++++..||||||||++||+||+.+|++|||||||++||+.+++++++.+++ .+.|||++||+++++.++|||
T Consensus 123 l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 123 LRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred Cch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCE
Confidence 974 56899999999999999999999999999999999999999999999998764 378999999999999999999
Q ss_pred eEEecCCeEeeccCChHHH
Q 008750 326 IVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~ 344 (555)
|++|++|++. +.|+.+++
T Consensus 202 i~~l~~G~i~-~~g~~~~~ 219 (301)
T TIGR03522 202 VIIINKGKIV-ADKKLDEL 219 (301)
T ss_pred EEEEECCEEE-EeCCHHHH
Confidence 9999999974 67877654
No 80
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-44 Score=373.25 Aligned_cols=207 Identities=29% Similarity=0.487 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
+|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999997 3679999999999999999999999999999999999999999999998743
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..|||++|++.+++..||.+|+...... . .........++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLEL---------------A------------------------GTPKAEIKARV 121 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 2599999999988889999998532100 0 00111234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||
T Consensus 122 ~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 122 TELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7889999996 467889999999999999999999999999999999999999999999988753 38999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||+|++|++|++. +.|...++
T Consensus 201 ~~~i~~~~d~v~~l~~G~i~-~~g~~~~~ 228 (343)
T PRK11153 201 MDVVKRICDRVAVIDAGRLV-EQGTVSEV 228 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999974 55665544
No 81
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-44 Score=348.71 Aligned_cols=198 Identities=28% Similarity=0.523 Sum_probs=171.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------eEEEEecccc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEFE 171 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------~ig~v~Q~~~ 171 (555)
|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 4789999999888899999999999999999999999999999999999999999999998643 5999999998
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+++..|+.+|+..... .. ..........+.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~ 120 (210)
T cd03269 81 LYPKMKVIDQLVYLAQ---------------LK------------------------GLKKEEARRRIDEWLERLELS-E 120 (210)
T ss_pred CCcCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHHcCCh-H
Confidence 8788899999753210 00 001112344677788899986 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++++.+||||||||++||+||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||||++++..+||++++
T Consensus 121 ~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE
Confidence 56788999999999999999999999999999999999999999999988753 478999999999999999999999
Q ss_pred ecCCeEe
Q 008750 329 TEMGVSR 335 (555)
Q Consensus 329 l~~G~~~ 335 (555)
|++|++.
T Consensus 201 l~~g~i~ 207 (210)
T cd03269 201 LNKGRAV 207 (210)
T ss_pred EeCCEEE
Confidence 9999874
No 82
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.3e-44 Score=358.01 Aligned_cols=212 Identities=24% Similarity=0.414 Sum_probs=179.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------- 160 (555)
+..|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 345999999999998899999999999999999999999999999999999999999999998742
Q ss_pred ---------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 ---------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..++|++|++.+++..|+.||+...... +. ...
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~--------------~~------------------------~~~ 124 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLS 124 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH--------------hC------------------------CCC
Confidence 2489999999887788999998532100 00 001
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCce
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~t 308 (555)
.+....++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|
T Consensus 125 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~t 204 (257)
T PRK10619 125 KQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 204 (257)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 1223456778899999975444788999999999999999999999999999999999999999999988653 5899
Q ss_pred EEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+||||++++..+||||++|++|+++ +.|+++++.
T Consensus 205 iiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 240 (257)
T PRK10619 205 MVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQLF 240 (257)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhh
Confidence 999999999999999999999999974 567777654
No 83
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=359.12 Aligned_cols=199 Identities=24% Similarity=0.397 Sum_probs=172.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEecc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQE 169 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~ 169 (555)
.+.|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 355999999999988889999999999999999999999999999999999999999999998753 359999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..||.+|+...+.. ....++.++++.+|+.
T Consensus 90 ~~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~l~~~gl~ 124 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKG---------------------------------------------QWRDAALQALAAVGLA 124 (257)
T ss_pred ccCCCCCcHHHHHHhcccc---------------------------------------------hHHHHHHHHHHHcCCh
Confidence 9887778999997532100 0123456678888886
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||+
T Consensus 125 -~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~ 203 (257)
T PRK11247 125 -DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADR 203 (257)
T ss_pred -hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 456888999999999999999999999999999999999999999999887743 489999999999999999999
Q ss_pred eEEecCCeEeeccCC
Q 008750 326 IVETEMGVSRTYEGN 340 (555)
Q Consensus 326 i~~l~~G~~~~~~G~ 340 (555)
|++|++|++. +.|+
T Consensus 204 i~~l~~G~i~-~~~~ 217 (257)
T PRK11247 204 VLLIEEGKIG-LDLT 217 (257)
T ss_pred EEEEECCEEE-eecc
Confidence 9999999874 3443
No 84
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.1e-44 Score=351.35 Aligned_cols=199 Identities=31% Similarity=0.490 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCc----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceE
Q 008750 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~i 163 (555)
+|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 37899999999876 79999999999999999999999999999999999999999999998753 259
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..||.+|+..... . ..........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l 121 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAG---------------L------------------------YGLKGDELTARLEELA 121 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHH
Confidence 999999988777899999753210 0 0001112345677888
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 122 DRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200 (218)
T ss_pred HHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999996 456888999999999999999999999999999999999999999999988753 4889999999999999
Q ss_pred hhcceeEEecCCeEe
Q 008750 321 QLCTKIVETEMGVSR 335 (555)
Q Consensus 321 ~~~dri~~l~~G~~~ 335 (555)
.+||+|++|++|++.
T Consensus 201 ~~~d~i~~l~~G~i~ 215 (218)
T cd03266 201 RLCDRVVVLHRGRVV 215 (218)
T ss_pred HhcCEEEEEECCEEe
Confidence 999999999999874
No 85
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.1e-44 Score=355.64 Aligned_cols=216 Identities=28% Similarity=0.430 Sum_probs=176.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v 166 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 478999999988889999999999999999999999999999999999999999999998743 249999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..||.+|+....... . ... + .. ............++.++++.+
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~---------------~-~~~---~---~~-------~~~~~~~~~~~~~~~~~l~~~ 131 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQAR---------------T-GSG---L---LL-------ARARREEREARERAEELLERV 131 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhc---------------c-ccc---c---cc-------ccccccHHHHHHHHHHHHHHc
Confidence 99998888899999985431100 0 000 0 00 000000112344677889999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++..+|
T Consensus 132 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 210 (236)
T cd03219 132 GLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA 210 (236)
T ss_pred Ccc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 996 456889999999999999999999999999999999999999999999988753 5889999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|+|++|++|++. +.|+.+++
T Consensus 211 d~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 211 DRVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred CEEEEEeCCEEE-eecCHHHh
Confidence 999999999874 55665543
No 86
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-44 Score=366.32 Aligned_cols=209 Identities=22% Similarity=0.346 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCCc-----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
.|+++||+++|++. ++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999642 59999999999999999999999999999999999999999999997531
Q ss_pred -----------------------ceEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Q 008750 161 -----------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216 (555)
Q Consensus 161 -----------------------~~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (555)
..||||+|++. .++..||.+|+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~---------------------------- 133 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS---------------------------- 133 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH----------------------------
Confidence 14899999863 34567999998532100
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHH
Q 008750 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE 296 (555)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~ 296 (555)
......+..+++.++++.+||.....++++.+|||||||||+||+||+.+|++|||||||++||+.++.
T Consensus 134 -----------~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 134 -----------MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred -----------cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 001122345567888999999756789999999999999999999999999999999999999999999
Q ss_pred HHHHHHc---CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 297 WLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 297 ~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+.+.|+ +.|.|||+||||++++..+||||++|++|++ .+.|...++.
T Consensus 203 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i-~~~g~~~~~~ 253 (305)
T PRK13651 203 EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI-IKDGDTYDIL 253 (305)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEE-EEECCHHHHh
Confidence 9988774 3589999999999999999999999999986 4567665543
No 87
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-44 Score=364.29 Aligned_cols=208 Identities=22% Similarity=0.330 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 98 i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
|+++||+++|++ .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999964 4699999999999999999999999999999999999999999999998532
Q ss_pred ---eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ---KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ---~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.|||++|++. .++..||.+|+...... ......+..+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~ 123 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMN---------------------------------------FGVSEEDAKQ 123 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHH---------------------------------------cCCCHHHHHH
Confidence 4899999973 23457999998532100 0011122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
++.++++.+||.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiit 203 (290)
T PRK13634 124 KAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVT 203 (290)
T ss_pred HHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6788899999975567899999999999999999999999999999999999999999999887743 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||||++|++|++ .+.|+..++.
T Consensus 204 Hd~~~~~~~~drv~~l~~G~i-~~~g~~~~~~ 234 (290)
T PRK13634 204 HSMEDAARYADQIVVMHKGTV-FLQGTPREIF 234 (290)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEECCHHHHh
Confidence 999999999999999999997 4667766654
No 88
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8.3e-44 Score=368.35 Aligned_cols=214 Identities=21% Similarity=0.369 Sum_probs=179.3
Q ss_pred CCccEEEEeEEEEeCC-------------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 94 ISSGVKLENISKSYKG-------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~-------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
.+++|+++||+++|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3567999999999952 469999999999999999999999999999999999999999999998853
Q ss_pred -------------ceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q 008750 161 -------------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225 (555)
Q Consensus 161 -------------~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (555)
..|+||+|++ .+++.+||.+|+....... .
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~--------------~--------------------- 129 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY--------------H--------------------- 129 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh--------------c---------------------
Confidence 2599999998 4667889999985431100 0
Q ss_pred HHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-
Q 008750 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK- 304 (555)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~- 304 (555)
..+...+...++.++++.+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 130 --~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 130 --PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred --cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 00112233456778899999965677999999999999999999999999999999999999999999988887743
Q ss_pred ---CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 305 ---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 305 ---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+.|+||||||+.++.++||+|++|.+|+++ ..|..+++.
T Consensus 208 ~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~g~~~~i~ 250 (331)
T PRK15079 208 QREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-ELGTYDEVY 250 (331)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 4899999999999999999999999999874 457665544
No 89
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=6.3e-44 Score=346.70 Aligned_cols=194 Identities=32% Similarity=0.477 Sum_probs=169.6
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q~ 169 (555)
|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4789999999888899999999999999999999999999999999999999999999998643 59999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..||.+|+...... .. ....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (208)
T cd03268 81 PGFYPNLTARENLRLLARL-----------------------------------------LG--IRKKRIDEVLDVVGLK 117 (208)
T ss_pred CccCccCcHHHHHHHHHHh-----------------------------------------cC--CcHHHHHHHHHHcCCH
Confidence 9888889999997532100 00 0123466778888885
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|+||||++++..+||++
T Consensus 118 -~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 118 -DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred -HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 456788999999999999999999999999999999999999999999988753 5899999999999999999999
Q ss_pred EEecCCeEe
Q 008750 327 VETEMGVSR 335 (555)
Q Consensus 327 ~~l~~G~~~ 335 (555)
++|++|++.
T Consensus 197 ~~l~~g~i~ 205 (208)
T cd03268 197 GIINKGKLI 205 (208)
T ss_pred EEEECCEEE
Confidence 999999864
No 90
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-44 Score=363.15 Aligned_cols=210 Identities=22% Similarity=0.297 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
+|+++||+|+|++ +.+|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4899999999963 2599999999999999999999999999999999999999999999998532
Q ss_pred ----eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 ----KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 ----~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.||||+|++. .++..||.+|+...... ......+..
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~ 121 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQN---------------------------------------FGIPKEKAE 121 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHH---------------------------------------cCCCHHHHH
Confidence 4899999973 33457999988532100 001112334
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+ +.|.|||+||
T Consensus 122 ~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vt 201 (288)
T PRK13643 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201 (288)
T ss_pred HHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5678889999996556789999999999999999999999999999999999999999999988774 3589999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++..+||||++|++|++ .+.|..+++..
T Consensus 202 Hd~~~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 233 (288)
T PRK13643 202 HLMDDVADYADYVYLLEKGHI-ISCGTPSDVFQ 233 (288)
T ss_pred cCHHHHHHhCCEEEEEECCEE-EEECCHHHHHc
Confidence 999999999999999999997 46788777654
No 91
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=9.1e-44 Score=355.35 Aligned_cols=209 Identities=26% Similarity=0.448 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------------- 160 (555)
+|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 5899999999988889999999999999999999999999999999999999999999988632
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.+++..|+.+|+...... .. .........+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~ 124 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVI--------------VK------------------------GEPKEEATAR 124 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHH--------------hc------------------------CCCHHHHHHH
Confidence 2589999999887788999998532100 00 0011122345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecC
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd 315 (555)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|. +.+.|||+||||
T Consensus 125 ~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 125 ARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred HHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 67788889996 45688899999999999999999999999999999999999999999998775 358999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++++..+||+|++|++|++. +.|+.+++.
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 232 (250)
T PRK11264 204 MSFARDVADRAIFMDQGRIV-EQGPAKALF 232 (250)
T ss_pred HHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999874 567766553
No 92
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-44 Score=357.54 Aligned_cols=199 Identities=24% Similarity=0.339 Sum_probs=171.0
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----eEEEEecccc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFE 171 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----~ig~v~Q~~~ 171 (555)
+|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 47999999999888899999999999999999999999999999999999999999999987542 4899999998
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+++..||.+|+..... .. .........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~ 120 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQ---------------LA------------------------GVEKMQRLEIAHQMLKKVGLE-G 120 (255)
T ss_pred cCCCCcHHHHHHhHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-h
Confidence 8778899999753210 00 001112234677889999996 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+||+|+
T Consensus 121 ~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~ 200 (255)
T PRK11248 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV 200 (255)
T ss_pred HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 56888999999999999999999999999999999999999999999988754 38999999999999999999999
Q ss_pred Eec--CCeEe
Q 008750 328 ETE--MGVSR 335 (555)
Q Consensus 328 ~l~--~G~~~ 335 (555)
+|+ +|++.
T Consensus 201 ~l~~~~G~i~ 210 (255)
T PRK11248 201 LLSPGPGRVV 210 (255)
T ss_pred EEeCCCcEEE
Confidence 998 47763
No 93
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.3e-44 Score=353.17 Aligned_cols=209 Identities=23% Similarity=0.419 Sum_probs=177.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ig 164 (555)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 37899999999888899999999999999999999999999999999999999999999987431 489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+...... .. .........++.++++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~ 122 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLR--------------VR------------------------GASKEEAEKQARELLA 122 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHH
Confidence 999999887888999997532100 00 0011123345678888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+ +.+.|||+||||++++..
T Consensus 123 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 123 KVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEK 201 (240)
T ss_pred HcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99996 45688999999999999999999999999999999999999999999998874 358999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||+|++|++|++. +.|++.++.
T Consensus 202 ~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 202 VASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred hCCEEEEEECCEEE-eeCCHHHHh
Confidence 99999999999974 567776654
No 94
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6.7e-44 Score=352.32 Aligned_cols=206 Identities=28% Similarity=0.423 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v 166 (555)
|+++||+++|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 478999999998889999999999999999999999999999999999999999999998742 249999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+...... . .........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~ 121 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEI---------------R------------------------GLSKKEREEKLEELLEEF 121 (232)
T ss_pred cCCccccccCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 9999887888999997532100 0 000112234567788889
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+ +.+.|||++|||++++..+|
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~ 200 (232)
T cd03218 122 HIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSIT 200 (232)
T ss_pred CCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 986 45688899999999999999999999999999999999999999999988774 35889999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|+|++|++|++. +.|+.+++
T Consensus 201 d~i~~l~~G~i~-~~~~~~~~ 220 (232)
T cd03218 201 DRAYIIYEGKVL-AEGTPEEI 220 (232)
T ss_pred CEEEEEECCeEE-EEeCHHHh
Confidence 999999999874 56666554
No 95
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.2e-44 Score=349.26 Aligned_cols=204 Identities=28% Similarity=0.440 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v 166 (555)
|+++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999976 7899999999999999999999999999999999999999999999988542 48999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+...... . .........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~ 121 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARL---------------K------------------------GLPKSEIKEEVELLLRVL 121 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 9999887789999987532100 0 001112234567788888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~d 324 (555)
|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+.+.+.+.|++ .+.|||++|||++++..+||
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 122 GLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC
Confidence 986 456788999999999999999999999999999999999999999999998854 35899999999999999999
Q ss_pred eeEEecCCeEeeccCChH
Q 008750 325 KIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~ 342 (555)
+|++|++|++. ..|+.+
T Consensus 201 ~i~~l~~g~i~-~~~~~~ 217 (220)
T cd03263 201 RIAIMSDGKLR-CIGSPQ 217 (220)
T ss_pred EEEEEECCEEE-ecCCHH
Confidence 99999999875 445443
No 96
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-44 Score=384.45 Aligned_cols=255 Identities=23% Similarity=0.382 Sum_probs=199.6
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc---eeeeeeeEEEECC
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKG 123 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~---~vL~~vsl~i~~G 123 (555)
..+.....-|..+.++.++.+++|+..+-++..... ... .+ ....+.|+++||+|.|+.+ ++|+|+||+|+||
T Consensus 419 ~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~~--~p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG 494 (716)
T KOG0058|consen 419 SSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-GTL--AP-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG 494 (716)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-Ccc--cc-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCC
Confidence 356667777788999999999999988665532221 110 00 1356779999999999754 5999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhH----HH
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFK----EE 189 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~----~~ 189 (555)
|++|||||||+||||+.++|..+|+|++|+|.+||.++ +||+|.|+|.+ |+.||+|||..+.. ++
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL-Fs~sI~eNI~YG~~~~t~e~ 573 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL-FSGSIRENIAYGLDNATDEE 573 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee-ecccHHHHHhcCCCCCCHHH
Confidence 99999999999999999999999999999999999764 59999999988 88999999976542 22
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (555)
+..+++..+.+.++ ..+-+ |++....++ -.+||||||||+|
T Consensus 574 i~~AAk~ANah~FI------------------------------------~~~p~--gY~T~VGEk-G~qLSGGQKQRIA 614 (716)
T KOG0058|consen 574 IEAAAKMANAHEFI------------------------------------TNFPD--GYNTVVGEK-GSQLSGGQKQRIA 614 (716)
T ss_pred HHHHHHHhChHHHH------------------------------------HhCcc--ccccccCCc-cccccchHHHHHH
Confidence 22222222222221 11111 233222223 3589999999999
Q ss_pred HHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 270 lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||||++||.||||||.||+||.+++..+.+.|.+ .+.|||+|.|+++.+.+ ||+|+++++|++. ..|++++.+..
T Consensus 615 IARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl~~ 692 (716)
T KOG0058|consen 615 IARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELLSK 692 (716)
T ss_pred HHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHhhC
Confidence 99999999999999999999999999999998864 57999999999999975 9999999999974 56788776653
No 97
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-44 Score=354.08 Aligned_cols=214 Identities=26% Similarity=0.429 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ceE
Q 008750 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (555)
Q Consensus 98 i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~i 163 (555)
|+++||+++|++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 789999999999999999999999999999999999999999999998743 148
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..||.+|+.......... .. .+ ..........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~----~~------------------------~~~~~~~~~~~~~~~l 129 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRST---WR----SL------------------------FGLFPKEEKQRALAAL 129 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchh---hh----hh------------------------cccCcHHHHHHHHHHH
Confidence 99999998878899999985432100000 00 00 0000112234567788
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l 319 (555)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++
T Consensus 130 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 130 ERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred HHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999986 456888999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
..+||+|++|++|++. +.|.++++
T Consensus 209 ~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (241)
T cd03256 209 REYADRIVGLKDGRIV-FDGPPAEL 232 (241)
T ss_pred HHhCCEEEEEECCEEE-eecCHHHh
Confidence 9999999999999974 55776654
No 98
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-44 Score=352.51 Aligned_cols=207 Identities=31% Similarity=0.522 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCc----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
+|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 37899999999876 89999999999999999999999999999999999999999999998753
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++..|+.+|+...... . ..........+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEI---------------A------------------------GVPKAEIEERV 121 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 2489999999887788999997532100 0 00011123456
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 122 LELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 7788899996 456888999999999999999999999999999999999999999999988753 38899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||++++|++|++. ..|+..++
T Consensus 201 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (233)
T cd03258 201 MEVVKRICDRVAVMEKGEVV-EEGTVEEV 228 (233)
T ss_pred HHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999999999974 45665543
No 99
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-43 Score=348.66 Aligned_cols=199 Identities=26% Similarity=0.454 Sum_probs=170.0
Q ss_pred cEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ce
Q 008750 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~ 162 (555)
+|+++||+++| +++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 37899999999 66789999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++..|+.+|+..... .. .....+...++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~ 121 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLI---------------IA------------------------GASGDDIRRRVSAA 121 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHH---------------hc------------------------CCCHHHHHHHHHHH
Confidence 8999999988788999999853210 00 00111223456678
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.+ .+.|+|+||||++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 122 LDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred HHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8889986 456888999999999999999999999999999999999999999998887753 478999999999999
Q ss_pred HhhcceeEEecCCeEe
Q 008750 320 DQLCTKIVETEMGVSR 335 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~ 335 (555)
..+||+|++|++|++.
T Consensus 201 ~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 201 SRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHhCCEEEEEECCEEc
Confidence 9999999999999864
No 100
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-44 Score=346.32 Aligned_cols=197 Identities=29% Similarity=0.469 Sum_probs=169.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~Q 168 (555)
|+++|+++.|+++++|+|+||+|++| +++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 47899999998888999999999999 999999999999999999999999999999999854 25899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..||.+|+..... +. .....+....+.++++.+|+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l 120 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAW---------------LK------------------------GIPSKEVKARVDEVLELVNL 120 (211)
T ss_pred CCcccccCCHHHHHHHHHH---------------Hh------------------------CCCHHHHHHHHHHHHHHCCC
Confidence 9988778899999753210 00 00111224456778888998
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhccee
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri 326 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.++||++
T Consensus 121 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 121 G-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred H-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE
Confidence 6 456788999999999999999999999999999999999999999999998864 2689999999999999999999
Q ss_pred EEecCCeEe
Q 008750 327 VETEMGVSR 335 (555)
Q Consensus 327 ~~l~~G~~~ 335 (555)
++|++|++.
T Consensus 200 ~~l~~g~i~ 208 (211)
T cd03264 200 AVLNKGKLV 208 (211)
T ss_pred EEEECCEEE
Confidence 999999874
No 101
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-44 Score=361.95 Aligned_cols=210 Identities=23% Similarity=0.411 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
.|+++||++.|++ +++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999964 469999999999999999999999999999999999999999999998843
Q ss_pred -ceEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 -MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 -~~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..|||+||++. .++..||.+|+...... ..+...+...+
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~ 122 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPIN---------------------------------------LGLSEEEIENR 122 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHH---------------------------------------CCCCHHHHHHH
Confidence 25899999974 33567999998532100 00112233456
Q ss_pred HHHHhhhcCCCc-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 239 VSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||
T Consensus 123 ~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 788899999962 457899999999999999999999999999999999999999999999988743 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++..+||||++|++|++. +.|...++..
T Consensus 203 Hd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 234 (287)
T PRK13637 203 HSMEDVAKLADRIIVMNKGKCE-LQGTPREVFK 234 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999975 5677666543
No 102
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6e-44 Score=355.11 Aligned_cols=215 Identities=27% Similarity=0.415 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ce
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~ 162 (555)
+|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 378999999998 7789999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++..||.+|+........... . .+. .........++.++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~---~----~~~------------------------~~~~~~~~~~~~~~ 129 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTW---R----SLL------------------------GRFSEEDKERALSA 129 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccch---h----hhh------------------------ccccHHHHHHHHHH
Confidence 8999999988788999999854211000000 0 000 00011223467778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||+++
T Consensus 130 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 130 LERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred HHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 8999986 456888999999999999999999999999999999999999999999888753 37899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+.++||+|++|++|++. +.|+++++
T Consensus 209 ~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 209 AKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred HHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 99999999999999974 56766553
No 103
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=343.85 Aligned_cols=222 Identities=29% Similarity=0.402 Sum_probs=187.5
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
+++++++|+++||+-.+++||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.++ .|+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 568999999999999999999999999999999999999999999999999999999999998753 588
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
.-||.+.+++++||.||++.+...... +...+.. ........+..+++.++|+
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~-------~~~~l~~--------------------~~~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLG-------LSGLLGR--------------------PRARKEEREARERARELLE 135 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhh-------hhhhhcc--------------------ccchhhHHHHHHHHHHHHH
Confidence 999999999999999999765321110 0000000 0000012345678899999
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---C-CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~-~~~tvIiiSHd~~~l~ 320 (555)
.+||. +..+++..+||+|||+|+.|||||+.+|++||||||.+||.+.....+.+.++ + .|.||++|.||+.++.
T Consensus 136 ~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm 214 (250)
T COG0411 136 FVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM 214 (250)
T ss_pred HcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHh
Confidence 99997 57799999999999999999999999999999999999999998888887764 3 5799999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+||||+||+.|++ ..+|++++...
T Consensus 215 ~l~dri~Vl~~G~~-IAeG~P~eV~~ 239 (250)
T COG0411 215 GLADRIVVLNYGEV-IAEGTPEEVRN 239 (250)
T ss_pred hhccEEEeccCCcC-cccCCHHHHhc
Confidence 99999999999985 68999887654
No 104
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=8e-44 Score=347.38 Aligned_cols=196 Identities=28% Similarity=0.455 Sum_probs=167.8
Q ss_pred EEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------eE
Q 008750 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------KI 163 (555)
Q Consensus 98 i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------------~i 163 (555)
|+++||+++|++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 6799999999999999999999999999999999999999999999987531 48
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..|+.+|+...... . .........++.+++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEV---------------T------------------------GVPPREIRKRVPAAL 121 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 9999999888888999997542100 0 001112234567788
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 122 ELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 889986 456888999999999999999999999999999999999999999999888753 4899999999999999
Q ss_pred hhcceeEEecCCe
Q 008750 321 QLCTKIVETEMGV 333 (555)
Q Consensus 321 ~~~dri~~l~~G~ 333 (555)
.+||+|++|++|+
T Consensus 201 ~~~d~i~~l~~G~ 213 (214)
T cd03292 201 TTRHRVIALERGK 213 (214)
T ss_pred HhCCEEEEEeCCc
Confidence 9999999999886
No 105
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1e-43 Score=374.71 Aligned_cols=211 Identities=30% Similarity=0.408 Sum_probs=180.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+|||
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999843 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC--cccHHHHHHHHh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN--LDTLDAKVSKLM 243 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 243 (555)
++|++.+++.+||.+|+........ ..+. .....+++.+++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~l 124 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHR-------------------------------------SRFDTWTETDRAAVERAM 124 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhc-------------------------------------ccccCCCHHHHHHHHHHH
Confidence 9999998899999999864311000 0000 112245678889
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+|||||||||+|||||+++|++|||||||++||+.++..+.++|+ +.+.|||++|||++++.
T Consensus 125 e~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~ 203 (402)
T PRK09536 125 ERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA 203 (402)
T ss_pred HHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 999996 56789999999999999999999999999999999999999999988888765 35889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++||||++|++|++. +.|+++++.
T Consensus 204 ~~adrii~l~~G~iv-~~G~~~ev~ 227 (402)
T PRK09536 204 RYCDELVLLADGRVR-AAGPPADVL 227 (402)
T ss_pred HhCCEEEEEECCEEE-EecCHHHHh
Confidence 999999999999974 578776654
No 106
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.4e-44 Score=347.79 Aligned_cols=197 Identities=29% Similarity=0.500 Sum_probs=169.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ig~ 165 (555)
|+++||+++|+++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4789999999888899999999999999999999999999999999999999999999987532 4899
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..|+.+|+...... .. .........++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~~ 122 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIK--------------VK------------------------GMSKAEAEERALELLEK 122 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887789999997532100 00 00111223456778888
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++|||++++.++
T Consensus 123 ~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 123 VGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred cCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9986 456889999999999999999999999999999999999999999999988753 478999999999999999
Q ss_pred cceeEEecCCe
Q 008750 323 CTKIVETEMGV 333 (555)
Q Consensus 323 ~dri~~l~~G~ 333 (555)
||+|++|++|+
T Consensus 202 ~d~i~~l~~g~ 212 (213)
T cd03262 202 ADRVIFMDDGR 212 (213)
T ss_pred CCEEEEEeCCc
Confidence 99999999886
No 107
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=353.04 Aligned_cols=207 Identities=28% Similarity=0.411 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEE
Q 008750 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v 166 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999987 789999999999999999999999999999999999999999999998753 258999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..||.+|+..... +. ..+......++.++++.+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~l 121 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPK---------------LL------------------------KWPKEKIRERADELLALV 121 (242)
T ss_pred ccCccccCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHc
Confidence 999988788999999753210 00 001112244677889999
Q ss_pred CCCc-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHh
Q 008750 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~ 321 (555)
|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++..
T Consensus 122 ~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 122 GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9974 367889999999999999999999999999999999999999999999988754 38999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+||+|++|++|++. +.|+..++
T Consensus 202 ~~d~i~~l~~G~i~-~~~~~~~~ 223 (242)
T cd03295 202 LADRIAIMKNGEIV-QVGTPDEI 223 (242)
T ss_pred hCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999974 45655443
No 108
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.6e-43 Score=397.16 Aligned_cols=211 Identities=30% Similarity=0.488 Sum_probs=185.8
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc-cc
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EV 172 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~-~~ 172 (555)
...+|+++||++.|+++++|+||||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+ |.+..|||++|++ .+
T Consensus 316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAEL 394 (635)
T ss_pred CCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCccccc
Confidence 456799999999999888999999999999999999999999999999999999999999998 5667899999986 46
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
++..||.+|+...... .........+..++..+|+....
T Consensus 395 ~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~ 433 (635)
T PRK11147 395 DPEKTVMDNLAEGKQE-----------------------------------------VMVNGRPRHVLGYLQDFLFHPKR 433 (635)
T ss_pred CCCCCHHHHHHhhccc-----------------------------------------ccccchHHHHHHHHHhcCCCHHH
Confidence 6788999987532100 00001123467788889997566
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec-C
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE-M 331 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~-~ 331 (555)
.++++.+|||||||||+||++|+.+|+||||||||||||+.+++.|.++|++++.|||+||||++++..+||+|++++ +
T Consensus 434 ~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~ 513 (635)
T PRK11147 434 AMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGN 513 (635)
T ss_pred HhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCC
Confidence 789999999999999999999999999999999999999999999999999888899999999999999999999998 8
Q ss_pred CeEeeccCChHHHHH
Q 008750 332 GVSRTYEGNYSQYVL 346 (555)
Q Consensus 332 G~~~~~~G~y~~~~~ 346 (555)
|++..|.|+|++|..
T Consensus 514 g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 514 GKIGRYVGGYHDARQ 528 (635)
T ss_pred CeEEEccCCHHHHHH
Confidence 999999999999965
No 109
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.5e-44 Score=347.32 Aligned_cols=195 Identities=32% Similarity=0.477 Sum_probs=165.1
Q ss_pred EEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEE
Q 008750 99 KLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (555)
Q Consensus 99 ~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v 166 (555)
+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 789999999999999999999999999999999999999999999998743 258999
Q ss_pred eccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 167 SQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 167 ~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
+|++.. ++..|+.+|+...... . .........++.++++.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~ 121 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLEN---------------L------------------------GLPEEEIEERVEEALEL 121 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHH
Confidence 999753 5678999987532100 0 00111223456778888
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|.+ .+.|||+||||++++..+
T Consensus 122 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 122 VGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred cCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9986 456888999999999999999999999999999999999999999999988753 478999999999999999
Q ss_pred cceeEEecCCe
Q 008750 323 CTKIVETEMGV 333 (555)
Q Consensus 323 ~dri~~l~~G~ 333 (555)
||+|++|++|+
T Consensus 201 ~d~i~~l~~G~ 211 (211)
T cd03225 201 ADRVIVLEDGK 211 (211)
T ss_pred CCEEEEEeCCC
Confidence 99999999874
No 110
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.1e-43 Score=347.90 Aligned_cols=200 Identities=27% Similarity=0.405 Sum_probs=170.0
Q ss_pred CccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------
Q 008750 95 SSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------- 160 (555)
+++|+++||+++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 356999999999975 359999999999999999999999999999999999999999999998742
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.+++..|+.+|+..... .. ........
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~ 124 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPAL---------------LR------------------------GESSRQSR 124 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHH---------------hc------------------------CCCHHHHH
Confidence 259999999988788899999753210 00 00011234
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVII 312 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIii 312 (555)
+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|+ +.+.|||+|
T Consensus 125 ~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 203 (228)
T PRK10584 125 NGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILV 203 (228)
T ss_pred HHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5677888999996 45688899999999999999999999999999999999999999999998874 348899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEe
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~ 335 (555)
|||++++.. ||+|++|++|++.
T Consensus 204 sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 204 THDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred ecCHHHHHh-CCEEEEEECCEEE
Confidence 999999864 9999999999864
No 111
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=351.22 Aligned_cols=208 Identities=26% Similarity=0.419 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------------- 161 (555)
+|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 48999999999888899999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 -~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.|+|++|++.+++..|+.+|+...... .. .........++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~--------------~~------------------------~~~~~~~~~~~~ 123 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCR--------------VL------------------------GLSKDQALARAE 123 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHH--------------Hc------------------------CCCHHHHHHHHH
Confidence 489999999888888999998532100 00 000111234567
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|+||||++
T Consensus 124 ~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 124 KLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 788889996 467888999999999999999999999999999999999999999999988753 5899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++..+||++++|++|++. +.|++.++
T Consensus 203 ~~~~~~d~i~~l~~g~i~-~~~~~~~~ 228 (242)
T PRK11124 203 VARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred HHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 999999999999999874 66777654
No 112
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=358.69 Aligned_cols=207 Identities=26% Similarity=0.383 Sum_probs=174.8
Q ss_pred ccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEE
Q 008750 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig 164 (555)
++|+++||+++|+ +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 3689999999996 5679999999999999999999999999999999999999999999999853 2599
Q ss_pred EEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|++|++. .++..||.+|+...... ..+.......++..++
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 123 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVN---------------------------------------MGLDKDEVERRVEEAL 123 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999974 34667999998532100 0011122345677888
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++.
T Consensus 124 ~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 124 KAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred HHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999996 567899999999999999999999999999999999999999999999888753 4899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
++||+|++|++|++. +.|+...
T Consensus 203 ~~~d~i~~l~~G~i~-~~g~~~~ 224 (274)
T PRK13647 203 EWADQVIVLKEGRVL-AEGDKSL 224 (274)
T ss_pred HhCCEEEEEECCEEE-EECCHHH
Confidence 999999999999974 5566543
No 113
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-44 Score=334.60 Aligned_cols=205 Identities=20% Similarity=0.321 Sum_probs=167.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc-----eEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-----G~I~~~g~~~-------- 161 (555)
.+.++++||++.|+++.+|+|||+.|+++.++|||||+|||||||||++..+..... |+|.++|.++
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 355899999999999999999999999999999999999999999999999987754 9999998653
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
+||+|+|.|+.++ +|++||+..+.+-. .+ .+ .++++
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~--------g~------------------------------~~-~~lde 124 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH--------GI------------------------------KD-KELDE 124 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhh--------cc------------------------------ch-HHHHH
Confidence 6999999998866 99999997653210 00 00 12222
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
.++..|....|. .+.+++....|||||+||++|||||+.+|+|||||||||+|||.+-..+.+++.+ ...|||||
T Consensus 125 iVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviV 204 (253)
T COG1117 125 IVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIV 204 (253)
T ss_pred HHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEE
Confidence 333333333332 2345677789999999999999999999999999999999999887777777643 47899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccC
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEG 339 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G 339 (555)
||.+.-+.+++|+++++..|.++.|.-
T Consensus 205 THnmqQAaRvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 205 THNMQQAARVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred eCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence 999999999999999999999987743
No 114
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2e-43 Score=349.90 Aligned_cols=207 Identities=23% Similarity=0.385 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 47899999999888899999999999999999999999999999999999999999999987532 589999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..|+.+|+..... .. ..........+.++++.+|
T Consensus 81 q~~~~~~~~t~~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~g 121 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAA---------------LH------------------------GLSRAEARERIAALLARLG 121 (236)
T ss_pred CCCCCcccCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHHHHHHHHcC
Confidence 99988788999998743210 00 0001112345677888899
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~ 323 (555)
+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|+|+||||++++.. |
T Consensus 122 l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~ 199 (236)
T TIGR03864 122 LA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-D 199 (236)
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-C
Confidence 86 456888999999999999999999999999999999999999999999988753 47899999999999975 9
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|+.+++.
T Consensus 200 d~i~~l~~G~i~-~~~~~~~~~ 220 (236)
T TIGR03864 200 DRLVVLHRGRVL-ADGAAAELR 220 (236)
T ss_pred CEEEEEeCCeEE-EeCCHHHHH
Confidence 999999999974 456665543
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.7e-43 Score=346.82 Aligned_cols=196 Identities=24% Similarity=0.442 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------- 160 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 789999999964 479999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++..|+.+|+..... .. .........++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~ 122 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKSVKEAKERA 122 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHH
Confidence 249999999888778899999753210 00 00011123456
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 123 YEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7788899996 456889999999999999999999999999999999999999999999988753 48899999999
Q ss_pred HHHHHhhcceeEEecCCeE
Q 008750 316 RAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~ 334 (555)
++++.. ||+|++|++|++
T Consensus 202 ~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 202 LELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred HHHHhh-cCEEEEEeCCEe
Confidence 999965 899999999975
No 116
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-43 Score=363.53 Aligned_cols=214 Identities=16% Similarity=0.246 Sum_probs=177.8
Q ss_pred CCCccEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------
Q 008750 93 SISSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------- 160 (555)
...++|+++||+|+|++ .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 34567999999999964 369999999999999999999999999999999999999999999998621
Q ss_pred -------------------ceEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Q 008750 161 -------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220 (555)
Q Consensus 161 -------------------~~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (555)
..|+||+|++. ..+..||.+|+..+... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~-----------------~-------------- 145 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA-----------------L-------------- 145 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHh-----------------c--------------
Confidence 14899999973 23556999998532100 0
Q ss_pred HHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHH
Q 008750 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~ 300 (555)
.........++.++++.+|++....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+
T Consensus 146 --------~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~ 217 (320)
T PRK13631 146 --------GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ 217 (320)
T ss_pred --------CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 001122344677888999996456788999999999999999999999999999999999999999999998
Q ss_pred HHc---CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 301 YLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 301 ~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.|. +.|.|||+||||++++..+||+|++|++|+++ ..|+..++..
T Consensus 218 ~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~~ 265 (320)
T PRK13631 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL-KTGTPYEIFT 265 (320)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 875 35899999999999999999999999999974 5677766543
No 117
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=359.72 Aligned_cols=209 Identities=21% Similarity=0.323 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
.|+++||++.|++ +++|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999973 4699999999999999999999999999999999999999999999988531
Q ss_pred ----eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 ----KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 ----~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.|+|++|++. .++..||.+|+...... ......+..
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~ 122 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN---------------------------------------FGFSEDEAK 122 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH---------------------------------------cCCCHHHHH
Confidence 4899999973 33467999987532100 001112234
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiS 313 (555)
.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivs 202 (287)
T PRK13641 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT 202 (287)
T ss_pred HHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56778899999964567899999999999999999999999999999999999999999999888753 589999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||+|++|++|++ .+.|...++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~ 233 (287)
T PRK13641 203 HNMDDVAEYADDVLVLEHGKL-IKHASPKEIF 233 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEeCCHHHHh
Confidence 999999999999999999997 4567665543
No 118
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=350.85 Aligned_cols=203 Identities=23% Similarity=0.362 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v 166 (555)
.|+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 4899999999988889999999999999999999999999999999999999999999998843 259999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.++. .|+.+|+...... . .....++.++++.+
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~------------------------------------------~-~~~~~~~~~~l~~~ 118 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPML------------------------------------------K-GEKNVDVEYYLSIV 118 (241)
T ss_pred ecCchhch-hhHHHHHhcchhh------------------------------------------c-CcHHHHHHHHHHHc
Confidence 99987754 6999887432100 0 00123456778888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~ 322 (555)
|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|||+||||++++..+
T Consensus 119 ~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~ 198 (241)
T PRK14250 119 GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI 198 (241)
T ss_pred CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHh
Confidence 9864566889999999999999999999999999999999999999999999888753 489999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||+|++|++|++.. .|...++
T Consensus 199 ~d~i~~l~~G~i~~-~~~~~~~ 219 (241)
T PRK14250 199 GDYTAFLNKGILVE-YAKTYDF 219 (241)
T ss_pred CCEEEEEeCCEEEE-eCCHHHH
Confidence 99999999999754 4444443
No 119
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=359.79 Aligned_cols=209 Identities=24% Similarity=0.384 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 98 i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
|+++||+++|++ +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999963 3699999999999999999999999999999999999999999999988432
Q ss_pred ---eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ---KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ---~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.|||+||++. .++..||.+|+...... ..+.......
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~---------------------------------------~~~~~~~~~~ 123 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKN---------------------------------------FKMNLDEVKN 123 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHH---------------------------------------cCCCHHHHHH
Confidence 5899999973 33446999988532100 0011122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+++++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt 203 (286)
T PRK13646 124 YAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS 203 (286)
T ss_pred HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 6778899999964567889999999999999999999999999999999999999999999888753 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++..+||||++|++|++. +.|...++..
T Consensus 204 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 235 (286)
T PRK13646 204 HDMNEVARYADEVIVMKEGSIV-SQTSPKELFK 235 (286)
T ss_pred cCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999974 5677766543
No 120
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=364.18 Aligned_cols=211 Identities=22% Similarity=0.386 Sum_probs=177.2
Q ss_pred CccEEEEeEEEEeCC----------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----
Q 008750 95 SSGVKLENISKSYKG----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---- 160 (555)
+++|+++||++.|+. ..+|+||||+|.+||++||||+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 356999999999952 469999999999999999999999999999999999999999999999853
Q ss_pred ---------ceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Q 008750 161 ---------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (555)
Q Consensus 161 ---------~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
..|+||+|++ .+.+.+||.+++...+... ..
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--------------------------------------~~ 124 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--------------------------------------TS 124 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--------------------------------------cC
Confidence 2599999998 4667789988774321100 00
Q ss_pred cCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----C
Q 008750 230 VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (555)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~ 305 (555)
+...+...++.++++.+||.....++++++|||||+|||+|||||+.+|++||+||||++||+.++.++.++|.+ .
T Consensus 125 ~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~ 204 (327)
T PRK11308 125 LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL 204 (327)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc
Confidence 111223457888999999975567999999999999999999999999999999999999999999998887743 5
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|.|+|+||||+.++.++||+|++|.+|+++ ..|+..++
T Consensus 205 g~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~~ 242 (327)
T PRK11308 205 GLSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQI 242 (327)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 899999999999999999999999999975 45665444
No 121
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.8e-42 Score=413.55 Aligned_cols=221 Identities=22% Similarity=0.267 Sum_probs=160.5
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCC-------ceEEEEecccccCcCccHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN-------MKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~-------~~ig~v~Q~~~~~~~~tv~ 179 (555)
+.+|+|||+.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|.+ ..++|++|+..+++.+||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 45999999999999999999999999999999999999998 9999999853 3589999998888899999
Q ss_pred HHHHHhhHHH-----HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc---
Q 008750 180 EEFMSAFKEE-----MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD--- 251 (555)
Q Consensus 180 e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--- 251 (555)
|++..+..-. .........- +.......+. +.+.+... ......+....++.+++.+||++.
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~-ek~~~~~~~~--------~i~~~~~~-~~~~~~~~~~~~~~~L~~lGL~~~~~t 327 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARR-EKDAGIFPEA--------EVDLFMKA-TAMEGVKSSLITDYTLKILGLDICKDT 327 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHH-HHhccCCCch--------hhHHHHHH-hhhhcchhhHHHHHHHHHcCCccccCc
Confidence 9986432100 0000000000 0000000000 00000000 000011123356778999999642
Q ss_pred -ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH-HHHHhhcce
Q 008750 252 -DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTK 325 (555)
Q Consensus 252 -~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~-~~l~~~~dr 325 (555)
..+..+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|++ .|.|+|+++|++ ..+.++||+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 23667789999999999999999999999999999999999999998887753 488999999996 578889999
Q ss_pred eEEecCCeEeeccCCh
Q 008750 326 IVETEMGVSRTYEGNY 341 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y 341 (555)
|++|++|+++ |.|+.
T Consensus 408 vilL~~G~iv-y~G~~ 422 (1470)
T PLN03140 408 IILLSEGQIV-YQGPR 422 (1470)
T ss_pred EEEeeCceEE-EeCCH
Confidence 9999999874 55543
No 122
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=348.03 Aligned_cols=199 Identities=24% Similarity=0.446 Sum_probs=169.4
Q ss_pred ccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
++|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 46999999999964 479999999999999999999999999999999999999999999998843
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++..|+.+|+..... +. .........
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~ 124 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKKPAEINS 124 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHH---------------hc------------------------CCCHHHHHH
Confidence 249999999988778899999853210 00 001112334
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
++.++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||
T Consensus 125 ~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 125 RALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 677888999996 456788999999999999999999999999999999999999999999988753 488999999
Q ss_pred cCHHHHHhhcceeEEecCCeEe
Q 008750 314 HDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~ 335 (555)
||++++.. +|++++|++|++.
T Consensus 204 H~~~~~~~-~~~~~~l~~G~i~ 224 (233)
T PRK11629 204 HDLQLAKR-MSRQLEMRDGRLT 224 (233)
T ss_pred CCHHHHHh-hCEEEEEECCEEE
Confidence 99999987 4799999999874
No 123
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.1e-43 Score=349.83 Aligned_cols=216 Identities=29% Similarity=0.430 Sum_probs=178.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig~ 165 (555)
+|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 58999999999888899999999999999999999999999999999999999999999998532 4999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..||.+|+........... ..+ ........+.++.++++.
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~~~~~~l~~ 130 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVF-------ASL------------------------FFRLSAEEKDRIEEVLET 130 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccc-------ccc------------------------ccccHHHHHHHHHHHHHH
Confidence 9999988888899999854211000000 000 000001224567788899
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhc
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~ 323 (555)
+|+. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+|
T Consensus 131 ~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 209 (242)
T TIGR03411 131 IGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIA 209 (242)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 9996 456888999999999999999999999999999999999999999999998864 3689999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|+++++.
T Consensus 210 d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 210 DKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred CEEEEEECCeEE-eeCCHHHHh
Confidence 999999999974 567766654
No 124
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.5e-43 Score=363.26 Aligned_cols=199 Identities=29% Similarity=0.458 Sum_probs=170.1
Q ss_pred EEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEecccccCcC
Q 008750 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQEFEVSMS 175 (555)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~Q~~~~~~~ 175 (555)
++|+++++|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+. .+||++|++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 468888899999999999999999999999999999999999999999999988542 59999999988888
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
+||.+|+..... +. .........++.++++.+|+. ...++
T Consensus 81 ~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~ 120 (302)
T TIGR01188 81 LTGRENLEMMGR---------------LY------------------------GLPKDEAEERAEELLELFELG-EAADR 120 (302)
T ss_pred CcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhCC
Confidence 999999753210 00 001112345678889999996 45789
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++ .|.|||++|||++++..+||+|++|++|
T Consensus 121 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999988753 4899999999999999999999999999
Q ss_pred eEeeccCChHHH
Q 008750 333 VSRTYEGNYSQY 344 (555)
Q Consensus 333 ~~~~~~G~y~~~ 344 (555)
++. +.|+.+++
T Consensus 201 ~i~-~~g~~~~l 211 (302)
T TIGR01188 201 RII-AEGTPEEL 211 (302)
T ss_pred EEE-EECCHHHH
Confidence 974 56776554
No 125
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.1e-43 Score=347.69 Aligned_cols=201 Identities=26% Similarity=0.411 Sum_probs=166.8
Q ss_pred cEEEEeEEEEeCCc----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
+|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999765 79999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH-H
Q 008750 161 -MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL-D 236 (555)
Q Consensus 161 -~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 236 (555)
..++|++|++ .+++..||.+|+...... .. .. ..... .
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~---------------~~-~~----------------------~~~~~~~ 122 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI---------------HG-KL----------------------SKKEARK 122 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHh---------------cc-CC----------------------cHHHHHH
Confidence 2599999998 355678999997532100 00 00 00001 1
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIii 312 (555)
..+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||+|
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 202 (228)
T cd03257 123 EAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI 202 (228)
T ss_pred HHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 11246778888854466888999999999999999999999999999999999999999999988753 38899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEe
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~ 335 (555)
|||++++..+||+|++|++|++.
T Consensus 203 sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 203 THDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred eCCHHHHHHhcCeEEEEeCCEEE
Confidence 99999999999999999999874
No 126
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2e-43 Score=346.54 Aligned_cols=203 Identities=25% Similarity=0.397 Sum_probs=168.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v 166 (555)
|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 578999999988889999999999999999999999999999999999999999999998742 249999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+....... ........+..+++.+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-----------------------------------------~~~~~~~~~~~~l~~~ 119 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYAR-----------------------------------------RRAKRKARLERVYELF 119 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhc-----------------------------------------CchhHHHHHHHHHHHH
Confidence 99998888889999985421100 0001122334445555
Q ss_pred -CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 247 -GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 -gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||++|||++++..+
T Consensus 120 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 120 PRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred Hhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 343 345788899999999999999999999999999999999999999999988753 578999999999999999
Q ss_pred cceeEEecCCeEeeccCChHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~ 343 (555)
||+|++|++|++. ..|+..+
T Consensus 199 ~d~i~~l~~G~i~-~~~~~~~ 218 (222)
T cd03224 199 ADRAYVLERGRVV-LEGTAAE 218 (222)
T ss_pred ccEEEEeeCCeEE-EeCCHHH
Confidence 9999999999874 4565443
No 127
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.3e-43 Score=345.88 Aligned_cols=199 Identities=31% Similarity=0.486 Sum_probs=166.4
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEecccccC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS 173 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~~~~~ 173 (555)
+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.++
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 36899999988889999999999999999999999999999999999999999999999864 3599999998763
Q ss_pred --cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 174 --MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 174 --~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+..||.+|+......... . ..........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~-----------~------------------------~~~~~~~~~~~~~~~l~~~~l~-~ 124 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKG-----------L------------------------FRRLSKADKAKVDEALERVGLS-E 124 (213)
T ss_pred cCCCCcHHHHHHhccccccc-----------c------------------------ccCCCHHHHHHHHHHHHHcCCH-H
Confidence 447999998542110000 0 0000011234577788899986 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||+|++
T Consensus 125 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 67889999999999999999999999999999999999999999999888753 578999999999999999999999
Q ss_pred ecCCe
Q 008750 329 TEMGV 333 (555)
Q Consensus 329 l~~G~ 333 (555)
|++|.
T Consensus 205 l~~~~ 209 (213)
T cd03235 205 LNRTV 209 (213)
T ss_pred EcCcE
Confidence 99874
No 128
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=334.29 Aligned_cols=211 Identities=30% Similarity=0.438 Sum_probs=182.0
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
+.+.++|+.|+|++++++++|||+|++||+|||+||||+||||.+.+|.|+.+|++|+|.+++.++ .||
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 458999999999999999999999999999999999999999999999999999999999998753 599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHH
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKL 242 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 242 (555)
|+||++..|..+||.||++..++... .+.+ +...+++++
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~---------------------------------------~d~~~~~~~~~l~~L 123 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIRE---------------------------------------KDLKKAERKEELDAL 123 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhh---------------------------------------cchhHHHHHHHHHHH
Confidence 99999999999999999875431100 0111 223457789
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHH---HHHcCCCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~---~~l~~~~~tvIiiSHd~~~l 319 (555)
|++|.+. ...+++..+||||||+|+.|||||+.+|+++|||||++|.||-+...+. ..|++.|..|+|+.|+..+.
T Consensus 124 L~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt 202 (243)
T COG1137 124 LEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET 202 (243)
T ss_pred HHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH
Confidence 9999996 4678888999999999999999999999999999999999997765554 45677899999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
..+|||.+++.+|++ .+.|+.++....
T Consensus 203 L~i~dRaYIi~~G~v-la~G~p~ei~~n 229 (243)
T COG1137 203 LDICDRAYIISDGKV-LAEGSPEEIVNN 229 (243)
T ss_pred HhhhheEEEEecCeE-EecCCHHHHhcC
Confidence 899999999999986 678988776653
No 129
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=350.11 Aligned_cols=209 Identities=26% Similarity=0.433 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~ 165 (555)
+|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 5899999999988889999999999999999999999999999999999999999999998742 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..|+.+|+..... +.. .........++.++++.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~---------------~~~-----------------------~~~~~~~~~~~~~~l~~ 124 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQ---------------IRD-----------------------DLSAEQREDRANELMEE 124 (241)
T ss_pred eccCCcccccCcHHHHHhhhhh---------------ccc-----------------------ccCHHHHHHHHHHHHHH
Confidence 9999988778899999853210 000 00011223456778888
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.++ +.|.|+|++|||++++..+
T Consensus 125 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~ 203 (241)
T PRK10895 125 FHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV 203 (241)
T ss_pred cCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 8986 35678899999999999999999999999999999999999999998887764 4589999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+|++|++|++. +.|+++++.
T Consensus 204 ~d~v~~l~~G~i~-~~~~~~~~~ 225 (241)
T PRK10895 204 CERAYIVSQGHLI-AHGTPTEIL 225 (241)
T ss_pred cCEEEEEeCCeEE-eeCCHHHHh
Confidence 9999999999974 567776654
No 130
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-43 Score=352.19 Aligned_cols=208 Identities=28% Similarity=0.391 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v 166 (555)
+|+++||++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4899999999998889999999999999999999999999999999999999999999998853 248999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..||.+|+....... .........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~ 122 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPH---------------------------------------GLSRAEDDALVAAALAQV 122 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhccc---------------------------------------CCCcHHHHHHHHHHHHHc
Confidence 99998878889999975321000 000111234567788888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhc------cCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCH
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDR 316 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~------~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~ 316 (555)
|+. ...++.+.+|||||||||+|||||+ .+|++|||||||++||+.++..+.++|+ +.+.|||+||||+
T Consensus 123 ~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 123 DLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred CCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 986 4568899999999999999999999 5999999999999999999988888764 3588999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+++..+||+|++|++|++. +.|.++++.
T Consensus 202 ~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 229 (258)
T PRK13548 202 NLAARYADRIVLLHQGRLV-ADGTPAEVL 229 (258)
T ss_pred HHHHHhcCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999999999874 567665543
No 131
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.2e-44 Score=324.56 Aligned_cols=208 Identities=23% Similarity=0.366 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q 168 (555)
+|.+++|+++|+..+. .++++|+.||++||+|||||||||||++|+|++.|.+|+|.++|.+. -+++++|
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 3678999999986542 47899999999999999999999999999999999999999998753 3899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
+.++|.++||.+|+..+....+.. .....++++.++..+|+
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL---------------------------------------~a~~r~~v~~aa~~vGl 119 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKL---------------------------------------NAEQREKVEAAAAQVGL 119 (231)
T ss_pred ccccchhhhhhhhhcccCCccccc---------------------------------------CHHHHHHHHHHHHHhCh
Confidence 999999999999986553221110 11224567888899999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~d 324 (555)
. .+.+|.|.+|||||||||+|||+|+.+-+|||||||+++|||.-+..+..++ .+.+.|++||||.++.+.++++
T Consensus 120 ~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~ 198 (231)
T COG3840 120 A-GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIAD 198 (231)
T ss_pred h-hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhh
Confidence 6 5779999999999999999999999999999999999999998887776654 4579999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+++++++|++ .+.|..+++...
T Consensus 199 ~~~fl~~Gri-~~~g~~~~~~~~ 220 (231)
T COG3840 199 RVVFLDNGRI-AAQGSTQELLSG 220 (231)
T ss_pred ceEEEeCCEE-EeeccHHHHhcc
Confidence 9999999997 577877776654
No 132
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.8e-43 Score=349.27 Aligned_cols=214 Identities=24% Similarity=0.314 Sum_probs=175.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCCC-----------ceEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~g~~-----------~~ig 164 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 47899999998888999999999999999999999999999999999995 7999999998843 2389
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..|+.+|+......... ... . ......+...++.++++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~-----------~~~--~-------------------~~~~~~~~~~~~~~~l~ 128 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRS-----------ARG--E-------------------EPLDLLDFLKLLKAKLA 128 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhc-----------ccc--c-------------------ccccHHHHHHHHHHHHH
Confidence 999999888889999987542110000 000 0 00011123456788899
Q ss_pred hcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
.+|++....++++. +|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.
T Consensus 129 ~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN 208 (243)
T ss_pred HcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH
Confidence 99997555677786 5999999999999999999999999999999999999999998854 4789999999999999
Q ss_pred hh-cceeEEecCCeEeeccCChHHH
Q 008750 321 QL-CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 321 ~~-~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.+ ||+|++|++|++ .+.|+++++
T Consensus 209 ~~~~d~i~~l~~G~i-~~~g~~~~~ 232 (243)
T TIGR01978 209 YIKPDYVHVLLDGRI-VKSGDVELA 232 (243)
T ss_pred hhcCCeEEEEeCCEE-EEecCHHHh
Confidence 98 899999999987 456776543
No 133
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.4e-43 Score=347.27 Aligned_cols=202 Identities=23% Similarity=0.379 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCCC------------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN------------ 160 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~g~~------------ 160 (555)
|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|++ +|++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999998888999999999999999999999999999999999999 9999999998853
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..++|++|++.++ ..||.+|+...... .. .........++.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~~ 121 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRL---------------HG-----------------------IKLKEELDERVE 121 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHh---------------cC-----------------------CCcHHHHHHHHH
Confidence 1489999998876 78999998532100 00 000011245567
Q ss_pred HHhhhcCCCccccCCC--CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEEecCH
Q 008750 241 KLMPELGFTADDGDRL--VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~--~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIiiSHd~ 316 (555)
++++.+|+.. ..++. +.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++. ..|||+||||+
T Consensus 122 ~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 122 EALRKAALWD-EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHHcCCCh-HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 7888999864 33444 5999999999999999999999999999999999999999999988542 27999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCC
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGN 340 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~ 340 (555)
+++..+||+|++|++|++. +.|+
T Consensus 201 ~~~~~~~d~i~~l~~G~i~-~~g~ 223 (227)
T cd03260 201 QQAARVADRTAFLLNGRLV-EFGP 223 (227)
T ss_pred HHHHHhCCEEEEEeCCEEE-EecC
Confidence 9999999999999999874 3343
No 134
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.3e-43 Score=349.29 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCCC-----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~g~~----------- 160 (555)
+|+++||+++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 378999999998888999999999999999999999999999999999999998 9999998743
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++ .|+.+|+...... .. .........++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~ 121 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRL---------------HG-----------------------IKDKKELDEIV 121 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 24999999988766 9999998532100 00 00011223456
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
..+++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 77888889862 456888999999999999999999999999999999999999999999988754 2589999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|++++..+||+|++|++|++. ..|+.+++.
T Consensus 202 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 231 (247)
T TIGR00972 202 NMQQAARISDRTAFFYDGELV-EYGPTEQIF 231 (247)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999974 456665543
No 135
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-43 Score=356.06 Aligned_cols=211 Identities=23% Similarity=0.386 Sum_probs=177.6
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------ 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------ 161 (555)
+++|+++||+++|+ ++++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 35699999999996 57899999999999999999999999999999999999999999999998532
Q ss_pred eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 ~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.+||++|++. ..+..|+.+|+...... ..........++.
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~ 123 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------LKLPEDEVRKRVD 123 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHH
Confidence 4899999974 23567999998532100 0001112234577
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~ 316 (555)
.+++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .|.|||++|||+
T Consensus 124 ~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 124 NALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred HHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 788999996 567899999999999999999999999999999999999999999988887743 489999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+++..+||||++|++|++ .+.|.++++..
T Consensus 203 ~~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 231 (283)
T PRK13636 203 DIVPLYCDNVFVMKEGRV-ILQGNPKEVFA 231 (283)
T ss_pred HHHHHhCCEEEEEECCEE-EEeCCHHHHhc
Confidence 999999999999999987 56788776654
No 136
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4.7e-43 Score=353.55 Aligned_cols=213 Identities=16% Similarity=0.373 Sum_probs=175.7
Q ss_pred CccEEEEeEEEEeCC---------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----
Q 008750 95 SSGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~---------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----- 160 (555)
.++|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 356999999999962 469999999999999999999999999999999999999999999998743
Q ss_pred -----ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc
Q 008750 161 -----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (555)
Q Consensus 161 -----~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
..++|++|++. +++..|+.+++...... . ..+...
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~----------------~----------------------~~~~~~ 123 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRL----------------N----------------------TDLEPE 123 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHh----------------c----------------------cCCCHH
Confidence 25999999974 44566888876432100 0 000111
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceE
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPM 309 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tv 309 (555)
...+.+.++++.+|+.....++.+.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|.+ .|.||
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tv 203 (267)
T PRK15112 124 QREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISY 203 (267)
T ss_pred HHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEE
Confidence 22345778899999965566788899999999999999999999999999999999999999999988754 48899
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
|+||||++++..+||+|++|++|++. ..|++.++..
T Consensus 204 iivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 239 (267)
T PRK15112 204 IYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA 239 (267)
T ss_pred EEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence 99999999999999999999999874 5677766543
No 137
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5e-43 Score=353.02 Aligned_cols=210 Identities=25% Similarity=0.464 Sum_probs=174.2
Q ss_pred cEEEEeEEEEeC---------CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------
Q 008750 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------- 160 (555)
+|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999995 3579999999999999999999999999999999999999999999998743
Q ss_pred ------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 161 ------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
..|+|++|++. +.+..||.+|+...... . ..+..
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~--------------~------------------------~~~~~ 123 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH--------------L------------------------TSLDE 123 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH--------------h------------------------cCCCH
Confidence 14999999973 44568999987532100 0 00111
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCce
Q 008750 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~t 308 (555)
.....++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|
T Consensus 124 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 203 (265)
T TIGR02769 124 SEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203 (265)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 122456778889999964567889999999999999999999999999999999999999999888887743 4899
Q ss_pred EEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+||||++++..+||++++|++|++. ..|+.+++.
T Consensus 204 iiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 239 (265)
T TIGR02769 204 YLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQLL 239 (265)
T ss_pred EEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHHc
Confidence 999999999999999999999999874 567665543
No 138
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.5e-43 Score=350.82 Aligned_cols=208 Identities=25% Similarity=0.423 Sum_probs=176.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------- 160 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------------- 160 (555)
|+++||++.|+++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 478999999988889999999999999999999999999999999999999999999998742
Q ss_pred ------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 ------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 ------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
..++|++|++.+++..|+.+|+....... . ......
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--------------~------------------------~~~~~~ 122 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--------------L------------------------GMARAE 122 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--------------c------------------------CCCHHH
Confidence 24999999998888899999985321000 0 001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvI 310 (555)
....+.++++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|+|
T Consensus 123 ~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 123 AEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred HHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 234567788889986 456888999999999999999999999999999999999999999999887753 489999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||||++++..+||++++|++|+++ ..|++.++.
T Consensus 202 ivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999974 567776654
No 139
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7e-43 Score=350.63 Aligned_cols=211 Identities=25% Similarity=0.392 Sum_probs=174.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----c---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----M--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~--------- 161 (555)
++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 46999999999988889999999999999999999999999999999999999999999998864 1
Q ss_pred -----eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 162 -----KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 162 -----~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
.++|++|++. +++..|+.+|+...+.. . . ......
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~--------------~-~-----------------------~~~~~~ 126 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMA--------------V-G-----------------------ARHYGD 126 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHH--------------h-c-----------------------cCcHHH
Confidence 4899999974 44566888877432100 0 0 000011
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvI 310 (555)
...++.++++.+|+.....++.+.+|||||+|||+|||||+.+|+||||||||++||+.+.+++.+.|++ .|.|||
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 127 IRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 2345677888899864456889999999999999999999999999999999999999999999888742 489999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||||++++..+||+|++|++|++. +.|..+++.
T Consensus 207 ~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 240 (258)
T PRK11701 207 IVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL 240 (258)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999974 566665543
No 140
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-43 Score=369.05 Aligned_cols=194 Identities=24% Similarity=0.344 Sum_probs=165.7
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEEEecccccCcCc
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEFEVSMSR 176 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~v~Q~~~~~~~~ 176 (555)
.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..++|++|++.+++++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999998743 2599999999988889
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
||.+|+...... .........+++.++++.+|+. ...+++
T Consensus 122 Tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~e~L~~~gL~-~~~~~~ 161 (400)
T PRK10070 122 TVLDNTAFGMEL---------------------------------------AGINAEERREKALDALRQVGLE-NYAHSY 161 (400)
T ss_pred CHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCCC-hhhhcC
Confidence 999998542100 0001112345677889999996 467899
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .++||||||||++++..+||+|++|++|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999887742 5899999999999999999999999999
Q ss_pred eEeeccCChHHHH
Q 008750 333 VSRTYEGNYSQYV 345 (555)
Q Consensus 333 ~~~~~~G~y~~~~ 345 (555)
++. +.|...++.
T Consensus 242 ~i~-~~g~~~~l~ 253 (400)
T PRK10070 242 EVV-QVGTPDEIL 253 (400)
T ss_pred EEE-ecCCHHHHH
Confidence 874 567666554
No 141
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-43 Score=354.95 Aligned_cols=208 Identities=20% Similarity=0.287 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ig 164 (555)
+|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 48999999999888899999999999999999999999999999999999999999999988542 489
Q ss_pred EEeccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|++|++.. .+..++.+|+...... . .........++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN---------------L------------------------GVPEAEITRRVDEAL 121 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 99999753 3455787776432100 0 001112234566778
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 122 TLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred HHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888885 456888999999999999999999999999999999999999999999988753 4889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. ..|...++.
T Consensus 201 ~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (271)
T PRK13638 201 EISDAVYVLRQGQIL-THGAPGEVF 224 (271)
T ss_pred HhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999874 567666543
No 142
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.4e-43 Score=346.90 Aligned_cols=204 Identities=23% Similarity=0.335 Sum_probs=168.3
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v 166 (555)
|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 478999999998889999999999999999999999999999999999999999999998743 259999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+....... . ......+.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------------~-~~~~~~~~~~l~~~ 118 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAAL-----------------------------------------P-RRSRKIPDEIYELF 118 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhc-----------------------------------------C-cchHHHHHHHHHHH
Confidence 99998877889999985322100 0 00011223344444
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~ 322 (555)
++-....++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||+||||++++..+
T Consensus 119 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 198 (230)
T TIGR03410 119 PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL 198 (230)
T ss_pred HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh
Confidence 4212345788999999999999999999999999999999999999999999988753 478999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||+|+++++|++. ..|+.++.
T Consensus 199 ~d~v~~l~~g~i~-~~~~~~~~ 219 (230)
T TIGR03410 199 ADRYYVMERGRVV-ASGAGDEL 219 (230)
T ss_pred CCEEEEEECCEEE-EECCHHHc
Confidence 9999999999874 55665543
No 143
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=5.7e-43 Score=352.08 Aligned_cols=217 Identities=21% Similarity=0.364 Sum_probs=179.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCCc----------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM---------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~~---------- 161 (555)
+++|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 35799999999999889999999999999999999999999999999999999986 49999988432
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++.+++.+||.+|+............ ... ........
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~------------------------------~~~-~~~~~~~~ 130 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWR------------------------------TCF-SWFTREQK 130 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchh------------------------------hhc-ccccHHHH
Confidence 489999999888888999998532110000000 000 00011224
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIii 312 (555)
.++.++++.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+|
T Consensus 131 ~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~ 209 (262)
T PRK09984 131 QRALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209 (262)
T ss_pred HHHHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5678889999996 467889999999999999999999999999999999999999999999988753 47899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++ .+.|+++++
T Consensus 210 tH~~~~~~~~~d~i~~l~~g~i-~~~g~~~~~ 240 (262)
T PRK09984 210 LHQVDYALRYCERIVALRQGHV-FYDGSSQQF 240 (262)
T ss_pred eCCHHHHHHhCCEEEEEECCEE-EEeCCHHHh
Confidence 9999999999999999999997 577888765
No 144
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-42 Score=384.96 Aligned_cols=215 Identities=34% Similarity=0.521 Sum_probs=184.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc-ccC
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EVS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~-~~~ 173 (555)
.++|+++||++.|+++++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++ ....|||++|++ .++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 400 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEEeCchhhcC
Confidence 467999999999998889999999999999999999999999999999999999999999995 456899999996 566
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..||.+|+...... . ... .....+..+++.+|+.....
T Consensus 401 ~~~tv~e~l~~~~~~---------------~------------------------~~~--~~~~~~~~~l~~~~l~~~~~ 439 (556)
T PRK11819 401 PNKTVWEEISGGLDI---------------I------------------------KVG--NREIPSRAYVGRFNFKGGDQ 439 (556)
T ss_pred CCCCHHHHHHhhccc---------------c------------------------ccc--ccHHHHHHHHHhCCCChhHh
Confidence 778999997532100 0 000 00122446788899965456
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecC-C
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~-G 332 (555)
++++.+|||||||||+|||||+.+|++|||||||++||+.++.+|.++|.+...|||+||||++++..+||+|++|++ |
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g 519 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDS 519 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCC
Confidence 899999999999999999999999999999999999999999999999988767999999999999999999999986 7
Q ss_pred eEeeccCChHHHHHHHHHH
Q 008750 333 VSRTYEGNYSQYVLEKAAW 351 (555)
Q Consensus 333 ~~~~~~G~y~~~~~~~~~~ 351 (555)
++..|.|+|++|.+.+++.
T Consensus 520 ~~~~~~g~~~~~~~~~~~~ 538 (556)
T PRK11819 520 QVEWFEGNFQEYEEDKKRR 538 (556)
T ss_pred eEEEecCCHHHHHHHHHHH
Confidence 8888999999998765533
No 145
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-43 Score=348.30 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=176.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~---------- 160 (555)
+.|+++||+++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred ceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 358999999999888899999999999999999999999999999999999974 79999998853
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..|+|++|++.+++..||.+|+...... ... .....+..+.+.
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~---------------~~~----------------------~~~~~~~~~~~~ 124 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKL---------------NRL----------------------VKSKKELQERVR 124 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHh---------------ccc----------------------cCCHHHHHHHHH
Confidence 2599999999877889999998542110 000 000112234567
Q ss_pred HHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecC
Q 008750 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (555)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd 315 (555)
++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+||||
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 204 (250)
T PRK14247 125 WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHF 204 (250)
T ss_pred HHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7788888753 346888999999999999999999999999999999999999999999998754 37899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++++..+||+|++|++|++ ...|+.+++.
T Consensus 205 ~~~~~~~~d~i~~l~~G~i-~~~g~~~~~~ 233 (250)
T PRK14247 205 PQQAARISDYVAFLYKGQI-VEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCEEEEEECCeE-EEECCHHHHH
Confidence 9999999999999999987 4567766553
No 146
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-43 Score=348.52 Aligned_cols=211 Identities=19% Similarity=0.296 Sum_probs=172.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~-------- 160 (555)
.+|.|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.+
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 3567999999999988889999999999999999999999999999999999974 689999998743
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.+++ .||.+|+...... .. . .......
T Consensus 83 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~ 123 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFP-KSIFENVAYGLRV---------------NG-V----------------------KDKAYLA 123 (253)
T ss_pred HHHhhcEEEEecCCCCCc-CcHHHHHHHHHHH---------------cC-C----------------------CCHHHHH
Confidence 24999999987765 5999998542100 00 0 0001123
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 203 (253)
T PRK14242 124 ERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIII 203 (253)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 45666777777742 245788899999999999999999999999999999999999999999998764 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||||++++..+||+|++|++|++. ..|..+++
T Consensus 204 ~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14242 204 VTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQI 235 (253)
T ss_pred EEecHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999874 45665554
No 147
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-43 Score=349.67 Aligned_cols=223 Identities=20% Similarity=0.365 Sum_probs=177.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
.+|+++||++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 46999999999998899999999999999999999999999999999999999999999998853 2489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+......... ......+... + .. ..........+.++++
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~-----~~~~~~~~~~--~----------------~~-~~~~~~~~~~~~~~l~ 139 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLK-----TGLFSGLLKT--P----------------AF-RRAESEALDRAATWLE 139 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcccc-----chhhhhhccc--c----------------cc-ccchhHHHHHHHHHHH
Confidence 999999888889999998643110000 0000000000 0 00 0000112345677888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|.+ .+.|||+||||++++.
T Consensus 140 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 140 RVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred hCChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 99985 467899999999999999999999999999999999999999999999988742 3889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.+||+|++|++|++. +.|..+++
T Consensus 219 ~~~d~i~~l~~g~i~-~~~~~~~~ 241 (255)
T PRK11300 219 GISDRIYVVNQGTPL-ANGTPEEI 241 (255)
T ss_pred HhCCEEEEEECCeEE-ecCCHHHH
Confidence 999999999999974 56665544
No 148
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-43 Score=360.08 Aligned_cols=210 Identities=23% Similarity=0.342 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC----CCceEEEEcCCCc-------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~----p~~G~I~~~g~~~------- 161 (555)
+|+++||++.|++ ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999975 469999999999999999999999999999999999997 4899999998642
Q ss_pred -------eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 162 -------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 162 -------~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
.|+|++|++. +.+.+|+.+++....... .....
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--------------------------------------~~~~~ 124 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--------------------------------------QGGNK 124 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--------------------------------------cCCCH
Confidence 4999999984 567788887764321000 00111
Q ss_pred ccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CC
Q 008750 233 DTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QD 306 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~ 306 (555)
.+..+++.++|+.+||.. ...++++++|||||+|||+|||||+.+|+|||+||||++||+.++..+.++|++ .|
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g 204 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 233456788999999963 356889999999999999999999999999999999999999999988887643 58
Q ss_pred ceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 307 ~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.|+|+||||++++.++||+|++|.+|+++ ..|+..+..
T Consensus 205 ~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~~~ 242 (326)
T PRK11022 205 MALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHDIF 242 (326)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999975 456655443
No 149
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.3e-42 Score=359.51 Aligned_cols=213 Identities=20% Similarity=0.362 Sum_probs=176.6
Q ss_pred CCccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCCc-----
Q 008750 94 ISSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM----- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~~----- 161 (555)
..++|+++||++.|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 456799999999994 257999999999999999999999999999999999999996 99999998542
Q ss_pred ---------eEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc
Q 008750 162 ---------KIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (555)
Q Consensus 162 ---------~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
.|+||+|++ .+.+.+|+.+++...... . ...
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~---------------~-----------------------~~~ 130 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML---------------H-----------------------KGM 130 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH---------------h-----------------------cCC
Confidence 599999998 566778998887532100 0 001
Q ss_pred CcccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----C
Q 008750 231 NLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (555)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~ 304 (555)
...+...++.++|+.+|++. ...++++++|||||+|||+|||||+.+|++||+||||++||+.++..+.++|+ +
T Consensus 131 ~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 131 SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 11223456778888999864 23578999999999999999999999999999999999999999998888764 3
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+.|+|+||||+.++.++||+|++|.+|+++ ..|+.+++.
T Consensus 211 ~g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~~i~ 250 (330)
T PRK09473 211 FNTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNARDVF 250 (330)
T ss_pred cCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 4899999999999999999999999999974 557766554
No 150
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-43 Score=354.05 Aligned_cols=207 Identities=22% Similarity=0.313 Sum_probs=171.9
Q ss_pred EEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 98 i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 899999999974 369999999999999999999999999999999999999999999998743
Q ss_pred --ceEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 --MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 --~~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..|+|++|++. ..+..|+.+|+...... . ....+....
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~ 123 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQN---------------F------------------------GVSQEEAEA 123 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHH---------------c------------------------CCCHHHHHH
Confidence 24899999973 23457999987532100 0 001112234
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEec
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSH 314 (555)
++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+|||
T Consensus 124 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH 203 (280)
T PRK13649 124 LAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203 (280)
T ss_pred HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 5677888889864556889999999999999999999999999999999999999999999988753 4899999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|++++..+||+|++|++|++. +.|..+++
T Consensus 204 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (280)
T PRK13649 204 LMDDVANYADFVYVLEKGKLV-LSGKPKDI 232 (280)
T ss_pred cHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999874 45665554
No 151
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=350.74 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=176.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig 164 (555)
.++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 3469999999999888899999999999999999999999999999999999999999999988532 499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..|+.+|+....... .... .........++..+++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~--------------~~~~---------------------~~~~~~~~~~~~~~l~ 133 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPW--------------HGAL---------------------GRFGAADREKVEEAIS 133 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccc--------------cccc---------------------cCCCHHHHHHHHHHHH
Confidence 9999987778889999975321000 0000 0000112345677888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.+++.+.++|.+ .+.|||+||||++++.
T Consensus 134 ~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~ 212 (265)
T PRK10575 134 LVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA 212 (265)
T ss_pred HcCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 89985 467889999999999999999999999999999999999999999988887742 4899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.+||+|++|++|++. ..|..+++
T Consensus 213 ~~~d~i~~l~~G~i~-~~~~~~~~ 235 (265)
T PRK10575 213 RYCDYLVALRGGEMI-AQGTPAEL 235 (265)
T ss_pred HhCCEEEEEECCeEE-EecCHHHh
Confidence 999999999999974 55665544
No 152
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-43 Score=345.73 Aligned_cols=207 Identities=22% Similarity=0.325 Sum_probs=170.0
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 46999999999988889999999999999999999999999999999999999999999998853 1499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+....... ........+.++++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------------~~~~~~~~~~~~l~ 122 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFA-----------------------------------------ERDQFQERIKWVYE 122 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcc-----------------------------------------ChhHHHHHHHHHHH
Confidence 9999998877789999985421000 00001112233344
Q ss_pred hc-CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 245 EL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~l-gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
.+ ++. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+ +.+.|||++|||++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (237)
T PRK11614 123 LFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 44 232 23467788999999999999999999999999999999999999999988774 35899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++||+|++|++|++ .+.|+.++..
T Consensus 202 ~~~d~i~~l~~G~i-~~~~~~~~~~ 225 (237)
T PRK11614 202 KLADRGYVLENGHV-VLEDTGDALL 225 (237)
T ss_pred hhCCEEEEEeCCEE-EeeCCHHHHh
Confidence 99999999999987 4667766543
No 153
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.2e-43 Score=363.92 Aligned_cols=201 Identities=24% Similarity=0.322 Sum_probs=173.3
Q ss_pred EEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEEEeccc
Q 008750 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEF 170 (555)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~v~Q~~ 170 (555)
|+|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46888889999999999999999999999999999999999999999999999843 2599999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++++||.+|+...... ......+..+++.++++.+||.
T Consensus 81 ~l~~~~TV~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~vgL~- 120 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPEL---------------------------------------LGWPEQERKEKALELLKLVGLE- 120 (363)
T ss_pred cCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhcCCc-
Confidence 999999999998542100 0011223456788899999996
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhccee
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+. +.++|||+||||++++..+||+|
T Consensus 121 ~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 57899999999999999999999999999999999999999999999988764 34899999999999999999999
Q ss_pred EEecCCeEeeccCChHHHHH
Q 008750 327 VETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 327 ~~l~~G~~~~~~G~y~~~~~ 346 (555)
++|++|++ ...|...++..
T Consensus 201 ~vl~~G~i-v~~g~~~ei~~ 219 (363)
T TIGR01186 201 VIMKAGEI-VQVGTPDEILR 219 (363)
T ss_pred EEEeCCEE-EeeCCHHHHHh
Confidence 99999987 45677766554
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=348.78 Aligned_cols=212 Identities=26% Similarity=0.360 Sum_probs=176.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 58999999999988899999999999999999999999999999999999999999999988531 49999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+.......... . .........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~----------~-------------------------~~~~~~~~~~~~~~l~~~ 126 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSL----------W-------------------------GRLSAEDNARVNQAMEQT 126 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhh----------c-------------------------cCCCHHHHHHHHHHHHHc
Confidence 99988777789999875321000000 0 000111234567788888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||++|||++++.++|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~ 205 (255)
T PRK11231 127 RIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC 205 (255)
T ss_pred CCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhc
Confidence 985 456889999999999999999999999999999999999999999999988753 4889999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|.++++.
T Consensus 206 d~i~~l~~G~i~-~~~~~~~~~ 226 (255)
T PRK11231 206 DHLVVLANGHVM-AQGTPEEVM 226 (255)
T ss_pred CEEEEEECCeEE-EEcCHHHhc
Confidence 999999999874 566665543
No 155
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-43 Score=339.49 Aligned_cols=196 Identities=24% Similarity=0.359 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q~ 169 (555)
|+++|++++|+++. .|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 47899999998754 399999999999999999999999999999999999999999988532 59999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+........ ......+.++.++++.+|+.
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~l~ 119 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGL---------------------------------------KLTAEDRQAIEVALARVGLA 119 (211)
T ss_pred cccCCCCcHHHHHhccccccc---------------------------------------CccHHHHHHHHHHHHHcCCH
Confidence 988778899999853211000 00001234567788889986
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 120 -GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred -HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 456888999999999999999999999999999999999999999999988753 489999999999999999999
Q ss_pred eEEecCCeEe
Q 008750 326 IVETEMGVSR 335 (555)
Q Consensus 326 i~~l~~G~~~ 335 (555)
|++|++|++.
T Consensus 199 i~~l~~G~i~ 208 (211)
T cd03298 199 VVFLDNGRIA 208 (211)
T ss_pred EEEEECCEEe
Confidence 9999999874
No 156
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=347.40 Aligned_cols=212 Identities=21% Similarity=0.259 Sum_probs=173.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~--------- 161 (555)
.+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 468999999999888899999999999999999999999999999999999987 499999987432
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.++|++|++.+++..||.+|+...... .... ........+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------------~~~~----------------------~~~~~~~~~ 125 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKL---------------NGLV----------------------KSKKELDER 125 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHh---------------cCcc----------------------CCHHHHHHH
Confidence 489999999887788999998532100 0000 000112234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.+..++.+.|++ .+.|||+||
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 205 (253)
T PRK14267 126 VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT 205 (253)
T ss_pred HHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 566677777642 245788999999999999999999999999999999999999999999988754 368999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||+|++|++|++. ..|...++.
T Consensus 206 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (253)
T PRK14267 206 HSPAQAARVSDYVAFLYLGKLI-EVGPTRKVF 236 (253)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999974 556665543
No 157
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.3e-42 Score=375.58 Aligned_cols=209 Identities=38% Similarity=0.643 Sum_probs=187.9
Q ss_pred CCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc
Q 008750 93 SISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~ 171 (555)
.....++++|+++.|++ +++++++||.|.+|+++|||||||+|||||||+|+|...|.+|+|.+. ...++||++|+..
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~igyf~Q~~~ 395 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIGYFDQHRD 395 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEEEEEehhh
Confidence 45678999999999965 689999999999999999999999999999999999999999999987 4589999999973
Q ss_pred -cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 172 -VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 172 -~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
+....|+.+++...+. ...+..++.+|..|+|+.
T Consensus 396 ~l~~~~t~~d~l~~~~~---------------------------------------------~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 396 ELDPDKTVLEELSEGFP---------------------------------------------DGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred hcCccCcHHHHHHhhCc---------------------------------------------cccHHHHHHHHHHcCCCh
Confidence 3456688877643210 111566788999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+...+++..||||||.|+.||+.++.+|+||||||||||||.++++.|.+.|.++.+|||+||||++|++.+|++||+++
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~ 510 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE 510 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeccCChHHHHHHH
Q 008750 331 MGVSRTYEGNYSQYVLEK 348 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~~~ 348 (555)
+ .+..|.|+|++|.+.+
T Consensus 511 ~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 511 D-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred C-ceeEcCCCHHHHHHhh
Confidence 9 8888999999998754
No 158
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-43 Score=353.46 Aligned_cols=208 Identities=24% Similarity=0.389 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
++|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 36899999999963 4599999999999999999999999999999999999999999999998542 5
Q ss_pred EEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 163 ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
++|++|++. .++..||.+|+...... ..........++.+
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~ 123 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLEN---------------------------------------KGIPHEEMKERVNE 123 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHh---------------------------------------CCCCHHHHHHHHHH
Confidence 899999974 55778999998532100 00112223456778
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++
T Consensus 124 ~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 124 ALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred HHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 89999996 567899999999999999999999999999999999999999999999887642 4899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++. .||+|++|++|++. ..|+..++.
T Consensus 203 ~~~-~~dri~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13650 203 EVA-LSDRVLVMKNGQVE-STSTPRELF 228 (279)
T ss_pred HHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 995 79999999999974 467765544
No 159
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=348.12 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=172.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~--------- 160 (555)
.++|+++|+++.|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 3569999999999888899999999999999999999999999999999999985 89999998743
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.++. .|+.+|+...... . .........
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~------------------------~~~~~~~~~ 129 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRI---------------H------------------------GANKKDLDG 129 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHH---------------c------------------------CCCHHHHHH
Confidence 14899999988765 8999998532100 0 000111233
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+. ....++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 130 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiiv 209 (258)
T PRK14268 130 VVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIV 209 (258)
T ss_pred HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEE
Confidence 466677777773 2345788999999999999999999999999999999999999999999988754 37899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++. +.|...++
T Consensus 210 sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 240 (258)
T PRK14268 210 THNMQQAARISDYTGFFLMGELI-EFGQTRQI 240 (258)
T ss_pred ECCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999974 55665554
No 160
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-43 Score=322.13 Aligned_cols=211 Identities=25% Similarity=0.421 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------- 160 (555)
+.|+++|+.++||...+|++|||+-++|+++.|||.+||||||+||||.=+..|+.|.|.++|..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 45899999999999999999999999999999999999999999999999999999999998742
Q ss_pred --------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 161 --------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
.+.|+|+|+++++..+||.||+..+.-.- + ....
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV-----------------------L---------------g~~k 126 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV-----------------------L---------------GVSK 126 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh-----------------------h---------------cCCH
Confidence 14799999999999999999987542110 0 2234
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH---HcCCCceE
Q 008750 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPM 309 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~---l~~~~~tv 309 (555)
.+..++++.+|.++|+. +..+.+|..|||||+||++|||||+.+|+++|+|||||+|||+-.-.+... |.+.|+|+
T Consensus 127 ~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTM 205 (256)
T COG4598 127 AEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTM 205 (256)
T ss_pred HHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence 45567788999999996 456799999999999999999999999999999999999999987776665 45679999
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++|||.+.|+.+++++|++|++|.+ .-.|...+...
T Consensus 206 v~VTHEM~FAR~Vss~v~fLh~G~i-EE~G~P~qvf~ 241 (256)
T COG4598 206 VVVTHEMGFARDVSSHVIFLHQGKI-EEEGPPEQVFG 241 (256)
T ss_pred EEEeeehhHHHhhhhheEEeeccee-cccCChHHHhc
Confidence 9999999999999999999999986 55677665543
No 161
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=354.57 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=172.4
Q ss_pred ccEEEEeEEEEeCCc-----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------- 160 (555)
..|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 459999999999764 49999999999999999999999999999999999999999999998742
Q ss_pred -----ceEEEEeccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 -----MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 -----~~ig~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
..|+|++|++.. .+..|+.+|+...... . ......
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~ 125 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN---------------L------------------------GENKQE 125 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH---------------c------------------------CCCHHH
Confidence 148999999742 2456999987532100 0 000111
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvI 310 (555)
...++.++++.++++....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||
T Consensus 126 ~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 205 (289)
T PRK13645 126 AYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRII 205 (289)
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2345667788889864567899999999999999999999999999999999999999999999887643 488999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||||++++.++||+|++|++|++. +.|...++.
T Consensus 206 iisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 239 (289)
T PRK13645 206 MVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEIF 239 (289)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999974 456655543
No 162
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-43 Score=353.05 Aligned_cols=206 Identities=27% Similarity=0.343 Sum_probs=174.5
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEE
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIA 164 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig 164 (555)
.++|+++.|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 56799999999999999999999999999999999999999999999999999999998742 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+...... . .........++.++++
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~ 146 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEV---------------Q------------------------GVPRAEREERAAEALE 146 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHH
Confidence 999999887889999998532100 0 0001122345677888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+ .|.|||++|||++++.
T Consensus 147 ~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 147 LVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99996 456889999999999999999999999999999999999999999999987743 3799999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. ..|..+++.
T Consensus 226 ~~~d~v~~l~~G~i~-~~g~~~~~~ 249 (269)
T cd03294 226 RLGDRIAIMKDGRLV-QVGTPEEIL 249 (269)
T ss_pred HhcCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999874 456655543
No 163
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=350.32 Aligned_cols=213 Identities=23% Similarity=0.303 Sum_probs=177.2
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig 164 (555)
...|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 346999999999998889999999999999999999999999999999999999999999998753 2489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..|+.+|+........ ... .........++.++++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~--------------~~~---------------------~~~~~~~~~~~~~~l~ 129 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQ--------------PLF---------------------TRWRKEDEEAVTKAMQ 129 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCccccc--------------ccc---------------------cCCCHHHHHHHHHHHH
Confidence 99999988888899998753210000 000 0000112345677888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|.+ .+.|||++|||++++.
T Consensus 130 ~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 130 ATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQAC 208 (265)
T ss_pred HcCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 89986 467899999999999999999999999999999999999999999999888743 4889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.+||+|++|++|++. ..|...++
T Consensus 209 ~~~d~i~~l~~G~i~-~~g~~~~~ 231 (265)
T PRK10253 209 RYASHLIALREGKIV-AQGAPKEI 231 (265)
T ss_pred HhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999974 55665544
No 164
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=389.42 Aligned_cols=207 Identities=30% Similarity=0.499 Sum_probs=179.7
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc--
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-- 171 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~-- 171 (555)
..++|+++||++.|+++++|+|+||+|.+|+++||+|+||||||||+|+|+|+++|++|+|.+++ ...|||++|+..
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q~~~~~ 387 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEF 387 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecCcchhh
Confidence 45679999999999988899999999999999999999999999999999999999999999874 357999999742
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+....|+.+++... ........+..+|..+||...
T Consensus 388 l~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~L~~~~l~~~ 422 (638)
T PRK10636 388 LRADESPLQHLARL---------------------------------------------APQELEQKLRDYLGGFGFQGD 422 (638)
T ss_pred CCccchHHHHHHHh---------------------------------------------CchhhHHHHHHHHHHcCCChh
Confidence 33344554443110 001123457788999999755
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecC
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
..++++.+|||||||||+||++|+.+|+||||||||||||+.++..|.++|.++++|||+||||++++..+||+|++|++
T Consensus 423 ~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~ 502 (638)
T PRK10636 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHD 502 (638)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 67899999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CeEeeccCChHHHHH
Q 008750 332 GVSRTYEGNYSQYVL 346 (555)
Q Consensus 332 G~~~~~~G~y~~~~~ 346 (555)
|++..|.|+|++|..
T Consensus 503 G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 503 GKVEPFDGDLEDYQQ 517 (638)
T ss_pred CEEEEcCCCHHHHHH
Confidence 998889999999954
No 165
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=359.14 Aligned_cols=216 Identities=21% Similarity=0.295 Sum_probs=174.5
Q ss_pred ccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC----CCceEEEEcCCCc------
Q 008750 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------ 161 (555)
Q Consensus 96 ~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~----p~~G~I~~~g~~~------ 161 (555)
++|+++||+++|+ ...+|+||||+|.+||++||||+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 3689999999993 3579999999999999999999999999999999999996 5899999988532
Q ss_pred --------eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 162 --------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 162 --------~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
.|+||+|++. +.+..||.+++........ ..... ...
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~------------~~~~~---------------------~~~ 128 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWT------------YKGRW---------------------WQR 128 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhh------------ccccc---------------------ccc
Confidence 5999999986 4567789888753210000 00000 000
Q ss_pred cccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----C
Q 008750 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~ 305 (555)
..+...++.++|+.+||.. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|++ .
T Consensus 129 ~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 129 FGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 0122456788999999974 346889999999999999999999999999999999999999999999888753 5
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|.||||||||++++.++||+|++|++|+++ ..|+..++.
T Consensus 209 g~tii~itHdl~~v~~~~dri~vm~~G~iv-e~g~~~~i~ 247 (330)
T PRK15093 209 NTTILLISHDLQMLSQWADKINVLYCGQTV-ETAPSKELV 247 (330)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 899999999999999999999999999974 566655543
No 166
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1e-42 Score=342.46 Aligned_cols=204 Identities=22% Similarity=0.334 Sum_probs=168.7
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig 164 (555)
.++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 456999999999988889999999999999999999999999999999999999999999999743 2589
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.++. .|+.+|+..... +. .......++.++++
T Consensus 85 ~~~q~~~l~~-~tv~enl~~~~~---------------~~--------------------------~~~~~~~~~~~~l~ 122 (225)
T PRK10247 85 YCAQTPTLFG-DTVYDNLIFPWQ---------------IR--------------------------NQQPDPAIFLDDLE 122 (225)
T ss_pred EEeccccccc-ccHHHHHHhHHh---------------hc--------------------------CCChHHHHHHHHHH
Confidence 9999988754 599998753110 00 00011234667888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+||||++++.
T Consensus 123 ~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 123 RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 899864456889999999999999999999999999999999999999999999887753 4889999999999996
Q ss_pred hhcceeEEecCCeEeeccCCh
Q 008750 321 QLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y 341 (555)
.||+|++|++..-.+.+|+|
T Consensus 203 -~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 203 -HADKVITLQPHAGEMQEARY 222 (225)
T ss_pred -hCCEEEEEecccchHhhhhh
Confidence 69999999622222345554
No 167
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=351.07 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=176.2
Q ss_pred ccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEE
Q 008750 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig 164 (555)
.+|+++||+++|+ +..+|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 3589999999996 45799999999999999999999999999999999999999999999988532 489
Q ss_pred EEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|++|++. .++..||.+|+...... ..........++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 122 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPIN---------------------------------------LGLDEETVAHRVSSAL 122 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999974 33567999987432100 0011112234577889
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l 319 (555)
+.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||++|||++++
T Consensus 123 ~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 123 HMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999996 567889999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.++||||++|++|++ .+.|..+++..
T Consensus 202 ~~~~drv~~l~~G~i-~~~g~~~~~~~ 227 (277)
T PRK13652 202 PEMADYIYVMDKGRI-VAYGTVEEIFL 227 (277)
T ss_pred HHhCCEEEEEECCeE-EEECCHHHHhc
Confidence 999999999999987 46687776643
No 168
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.8e-42 Score=347.33 Aligned_cols=211 Identities=28% Similarity=0.400 Sum_probs=176.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEe
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLS 167 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~ 167 (555)
|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 6899999999988999999999999999999999999999999999999999999999988432 489999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..||.+|+......... . ..........++.++++.+|
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~-----------~------------------------~~~~~~~~~~~~~~~l~~~~ 126 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRS-----------L------------------------WAGDSPHDAAVVDRALARTE 126 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhh-----------h------------------------ccCCCHHHHHHHHHHHHHcC
Confidence 998777888999998542100000 0 00001112345777888899
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||++|||++++..+||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 127 LS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred cH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 567889999999999999999999999999999999999999999999888753 47899999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|..+++.
T Consensus 206 ~i~~l~~G~i~-~~g~~~~~~ 225 (256)
T TIGR03873 206 HVVVLDGGRVV-AAGPPREVL 225 (256)
T ss_pred EEEEEeCCCEE-EecCHHHhh
Confidence 99999999874 567665543
No 169
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=346.20 Aligned_cols=210 Identities=21% Similarity=0.295 Sum_probs=171.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~--------- 160 (555)
+++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 3469999999999888899999999999999999999999999999999999987 48999998743
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..|+|++|++.++ ..||.+|+....... . .........
T Consensus 85 ~~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~ 125 (254)
T PRK14273 85 ELRRKIGMVFQTPNPF-LMSIYDNISYGPKIH---------------G-----------------------TKDKKKLDE 125 (254)
T ss_pred HHhhceEEEeeccccc-cCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHH
Confidence 2499999998775 589999985421100 0 000011234
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+. ....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 126 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~ 205 (254)
T PRK14273 126 IVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIV 205 (254)
T ss_pred HHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 455666666652 1345778999999999999999999999999999999999999999999888754 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++. ..|...++
T Consensus 206 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 236 (254)
T PRK14273 206 THNMQQAGRISDRTAFFLNGCIE-EESSTDEL 236 (254)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999974 45665554
No 170
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-42 Score=345.86 Aligned_cols=211 Identities=25% Similarity=0.404 Sum_probs=173.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------- 160 (555)
++|+++||++.|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 46999999999988889999999999999999999999999999999999999999999998754
Q ss_pred ----ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 ----~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
..++|++|++. +.+..|+.+|+...... .. ......
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~--------------~~------------------------~~~~~~ 123 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA--------------IG------------------------ARHYGN 123 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHH--------------hc------------------------ccchHH
Confidence 13899999974 33455777776421100 00 000001
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvI 310 (555)
....+.++++.+|+.....++.+..|||||||||+|||||+.+|++|||||||++||+.+++++.++|.+ .+.|+|
T Consensus 124 ~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 203 (253)
T TIGR02323 124 IRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203 (253)
T ss_pred HHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2345677889999864567889999999999999999999999999999999999999999999887743 489999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||||++++..+||++++|++|++. ..|...++.
T Consensus 204 ~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~ 237 (253)
T TIGR02323 204 IVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL 237 (253)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999974 456655543
No 171
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.7e-42 Score=381.83 Aligned_cols=212 Identities=35% Similarity=0.553 Sum_probs=182.4
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc-cC
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-VS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~-~~ 173 (555)
.++|+++||+++|+++++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++ .+..|||++|++. ++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 398 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEeCCccccC
Confidence 467999999999988889999999999999999999999999999999999999999999995 4567999999964 66
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..||.+|+...... ......+..+..+++.+|+.....
T Consensus 399 ~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~~ 437 (552)
T TIGR03719 399 PNKTVWEEISGGLDI-----------------------------------------IQLGKREVPSRAYVGRFNFKGSDQ 437 (552)
T ss_pred CCCcHHHHHHhhccc-----------------------------------------cccCcchHHHHHHHHhCCCChhHh
Confidence 778999998542100 000001123456788899864456
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecC-C
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~-G 332 (555)
++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++.+.|||+||||++++..+||+|++|++ |
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~ 517 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDS 517 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCC
Confidence 889999999999999999999999999999999999999999999999988767999999999999999999999986 5
Q ss_pred eEeeccCChHHHHHHH
Q 008750 333 VSRTYEGNYSQYVLEK 348 (555)
Q Consensus 333 ~~~~~~G~y~~~~~~~ 348 (555)
++..|.|+|++|...+
T Consensus 518 ~~~~~~g~~~~~~~~~ 533 (552)
T TIGR03719 518 HVEWFEGNYSEYEEDK 533 (552)
T ss_pred eEEEeCCCHHHHHHHH
Confidence 8878999999886654
No 172
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=345.30 Aligned_cols=210 Identities=21% Similarity=0.327 Sum_probs=173.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~---------- 161 (555)
.|+++||+++|+++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999888899999999999999999999999999999999999974 799999987432
Q ss_pred --eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 --~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.++|++|++.+++..||.+|+...... .. .......++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~~~ 125 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKL---------------NG-----------------------VRNKKDLDELV 125 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 499999999887888999998532100 00 00011223456
Q ss_pred HHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 6777788874 2356788999999999999999999999999999999999999999999988753 3689999999
Q ss_pred CHHHHHhhcceeEEec------CCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETE------MGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~------~G~~~~~~G~y~~~~ 345 (555)
|++++..+||+|++|+ +|++ .+.|+..++.
T Consensus 206 ~~~~~~~~~d~i~~l~~~~~~~~g~i-~~~~~~~~~~ 241 (258)
T PRK14241 206 NMQQAARVSDQTAFFNLEATGKPGRL-VEIDDTEKIF 241 (258)
T ss_pred CHHHHHHhCCEEEEEecccCCCCceE-EecCCHHHHH
Confidence 9999999999999996 7876 4557766553
No 173
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=346.05 Aligned_cols=211 Identities=21% Similarity=0.291 Sum_probs=172.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~-------- 161 (555)
.+.|+++|++++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 456999999999988889999999999999999999999999999999999986 5899999987432
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.|+|++|++.+++ .|+.+|+...... .. .........
T Consensus 91 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~ 131 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFP-MSIYDNIAFGVRL---------------FE-----------------------KLSRAEMDE 131 (260)
T ss_pred HHhcceEEEecCCccCc-CcHHHHHhhhHhh---------------cC-----------------------CCCHHHHHH
Confidence 4999999987755 8999997532100 00 001112234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+|
T Consensus 132 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 211 (260)
T PRK10744 132 RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIV 211 (260)
T ss_pred HHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5667777777642 345788899999999999999999999999999999999999999999988754 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||++++..+||+|++|++|++. ..|..+++.
T Consensus 212 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 243 (260)
T PRK10744 212 THNMQQAARCSDYTAFMYLGELI-EFGNTDTIF 243 (260)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999974 456655543
No 174
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=341.24 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|++.. .||||+|.+|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 478999999997644 39999999999999999999999999999999999999999999853 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+........ ......+.++.++++.+|+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~l 119 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGL---------------------------------------KLNAAQREKLHAIARQMGI 119 (232)
T ss_pred ccccccCCcHHHHHhccccccc---------------------------------------CCCHHHHHHHHHHHHHcCc
Confidence 9988778899999853210000 0001123457778889999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+||||++++..+||
T Consensus 120 ~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 120 E-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred H-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 6 467899999999999999999999999999999999999999999988887743 48899999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|++|++|++. +.|+++++..
T Consensus 199 ~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 199 RSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred EEEEEECCEEE-EeCCHHHHHh
Confidence 99999999874 6788776653
No 175
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-42 Score=348.16 Aligned_cols=244 Identities=22% Similarity=0.382 Sum_probs=205.1
Q ss_pred hhHHHHhccCcchhhhhhcccccCCCC---CCCCCccEEEEeEEEEeC---C--------ceeeeeeeEEEECCCEEEEE
Q 008750 64 SDVESLFSSSADEFENKKYSNKQSNTG---ASSISSGVKLENISKSYK---G--------VTVLKDVTWEVKKGEKVGLV 129 (555)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~nls~~y~---~--------~~vL~~vsl~i~~Ge~~~lv 129 (555)
+..+++|..|+++|++....+.|.-.. +...++.++.+||.+.|+ + ..++++|||++++||.+|||
T Consensus 240 ~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlV 319 (534)
T COG4172 240 GTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319 (534)
T ss_pred CcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEE
Confidence 568899999999999999888764332 224567899999999994 2 24899999999999999999
Q ss_pred cCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHH
Q 008750 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------------~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
|+||||||||-++|.+++++. |+|.|+|.++ ++-.|||||+ +.+.+||.+.+..++. ++
T Consensus 320 GESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~----vh- 393 (534)
T COG4172 320 GESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR----VH- 393 (534)
T ss_pred ecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh----hc-
Confidence 999999999999999999876 9999998653 5889999985 6678899887754421 00
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
+ ......+.++++.++|.++|+++...+|+|+++|||||||++|||||
T Consensus 394 ---------~-----------------------~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAl 441 (534)
T COG4172 394 ---------E-----------------------PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL 441 (534)
T ss_pred ---------C-----------------------CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHH
Confidence 0 02344566788999999999999999999999999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+.+|++++||||||+||......+.++|+ +++.+.+|||||+..+..+||+|+||++|+++ ..|+-++.+.
T Consensus 442 iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV-E~G~~~~if~ 516 (534)
T COG4172 442 ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV-EQGPTEAVFA 516 (534)
T ss_pred hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe-eeCCHHHHhc
Confidence 99999999999999999988887777764 57999999999999999999999999999975 4566555443
No 176
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-42 Score=348.76 Aligned_cols=207 Identities=26% Similarity=0.390 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
+|+++||+++|+ ++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995 56799999999999999999999999999999999999999999999987432 489
Q ss_pred EEeccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|++|++.. ++..|+.+|+...... .........+++.+++
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPEN---------------------------------------LCLPPIEIRKRVDRAL 121 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 99999763 4668999987532100 0011122345677788
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++..|||||+|||+|||||+.+|+||||||||++||+.++..+.+.|+ +.|.|||++|||++++.
T Consensus 122 ~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~ 200 (274)
T PRK13644 122 AEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH 200 (274)
T ss_pred HHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 899986 45788999999999999999999999999999999999999999999988874 35899999999999995
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++. +.|+..++.
T Consensus 201 -~~d~v~~l~~G~i~-~~g~~~~~~ 223 (274)
T PRK13644 201 -DADRIIVMDRGKIV-LEGEPENVL 223 (274)
T ss_pred -hCCEEEEEECCEEE-EECCHHHHh
Confidence 69999999999974 567766554
No 177
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-42 Score=348.77 Aligned_cols=208 Identities=24% Similarity=0.371 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eE
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~i 163 (555)
+|+++||+++|+ +.++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999996 46799999999999999999999999999999999999999999999988432 48
Q ss_pred EEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 164 g~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+|++|++. .++..||.+|+...... . .........++.++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~----------------~-----------------------~~~~~~~~~~~~~~ 121 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLN----------------L-----------------------GLSKEEVEKRVKEA 121 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHH----------------c-----------------------CCCHHHHHHHHHHH
Confidence 99999974 33567999987532100 0 00111223457778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++
T Consensus 122 l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~ 200 (275)
T PRK13639 122 LKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV 200 (275)
T ss_pred HHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 8999996 467899999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
..+||+|++|++|++. ..|+.+++.
T Consensus 201 ~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (275)
T PRK13639 201 PVYADKVYVMSDGKII-KEGTPKEVF 225 (275)
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999874 467776654
No 178
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-42 Score=337.22 Aligned_cols=194 Identities=23% Similarity=0.312 Sum_probs=167.4
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEEEEe
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLS 167 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig~v~ 167 (555)
+++|+++|++++|+++++|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 4579999999999888899999999999999999999999999999999999999999999998542 489999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..|+.+|+..... + .....+..+.+++..+|
T Consensus 89 q~~~~~~~~t~~e~l~~~~~---------------~---------------------------~~~~~~~~~~~~l~~~~ 126 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCG---------------L---------------------------HGRRAKQMPGSALAIVG 126 (214)
T ss_pred cCcccccCCcHHHHHHHHHH---------------h---------------------------cCCcHHHHHHHHHHHcC
Confidence 99888777899998743210 0 00112334567788889
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
+. ...++++.+||||||||++|||+|+.+|++|||||||++||+.+++++.++|.+ .+.|+|++|||++++.++||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 127 LA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred Ch-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence 86 456888999999999999999999999999999999999999999999988753 48999999999999999999
Q ss_pred eeEEecC
Q 008750 325 KIVETEM 331 (555)
Q Consensus 325 ri~~l~~ 331 (555)
++++++.
T Consensus 206 ~i~~l~~ 212 (214)
T PRK13543 206 RMLTLEA 212 (214)
T ss_pred eEEEEee
Confidence 9999863
No 179
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-42 Score=346.70 Aligned_cols=211 Identities=20% Similarity=0.281 Sum_probs=170.7
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~-------- 160 (555)
..++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4467999999999988889999999999999999999999999999999999864 799999998743
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.+++ .|+.+|+...+.. .. . ......+
T Consensus 98 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~--~---------------------~~~~~~~ 138 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFP-KSIYNNITHALKY---------------AG--E---------------------RRKSVLD 138 (268)
T ss_pred HHHhccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC--C---------------------CcHHHHH
Confidence 25899999987765 5999998542110 00 0 0000112
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
..+.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+
T Consensus 139 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 218 (268)
T PRK14248 139 EIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIII 218 (268)
T ss_pred HHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEE
Confidence 33455566666631 345788999999999999999999999999999999999999999999988764 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+|||++++..+||+|++|++|++. +.|..+++
T Consensus 219 ~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 250 (268)
T PRK14248 219 VTHNMQQALRVSDRTAFFLNGDLV-EYDQTEQI 250 (268)
T ss_pred EEeCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999874 45666554
No 180
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-42 Score=343.40 Aligned_cols=210 Identities=20% Similarity=0.331 Sum_probs=172.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~g~~~--------- 161 (555)
..|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 45899999999988889999999999999999999999999999999999986 4 689999987432
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.++|++|++.+++..|+.+|+...+.. .. .........+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~~ 124 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKL---------------NG-----------------------RVNRSEADEI 124 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHh---------------cC-----------------------CCCHHHHHHH
Confidence 499999999887788999998532110 00 0001112345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivs 204 (252)
T PRK14256 125 VESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204 (252)
T ss_pred HHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 666777788743 245678899999999999999999999999999999999999999999888754 368999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++. ..|..+++
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14256 205 HNMQQAARVSDYTAFFYMGDLV-ECGETKKI 234 (252)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999874 45665554
No 181
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.3e-42 Score=338.30 Aligned_cols=199 Identities=31% Similarity=0.458 Sum_probs=171.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------ceEEEEecccc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------~~ig~v~Q~~~ 171 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 478999999988889999999999999999999999999999999999999999999998753 25899999998
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+++..|+.+|+..... . .. ..+.++.++++.+|+. .
T Consensus 81 ~~~~~t~~~~~~~~~~---------------~--------------------------~~--~~~~~~~~~l~~~~l~-~ 116 (223)
T TIGR03740 81 LYENLTARENLKVHTT---------------L--------------------------LG--LPDSRIDEVLNIVDLT-N 116 (223)
T ss_pred ccccCCHHHHHHHHHH---------------H--------------------------cC--CCHHHHHHHHHHcCCc-H
Confidence 8778899998743210 0 00 0123566778889986 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||++|||++++..+||+|++
T Consensus 117 ~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 196 (223)
T TIGR03740 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGI 196 (223)
T ss_pred HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 56888999999999999999999999999999999999999999999988753 478999999999999999999999
Q ss_pred ecCCeEeeccCCh
Q 008750 329 TEMGVSRTYEGNY 341 (555)
Q Consensus 329 l~~G~~~~~~G~y 341 (555)
|++|++. ..|+.
T Consensus 197 l~~g~i~-~~~~~ 208 (223)
T TIGR03740 197 ISEGVLG-YQGKI 208 (223)
T ss_pred EeCCEEE-EecCh
Confidence 9999874 34543
No 182
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-42 Score=345.27 Aligned_cols=212 Identities=18% Similarity=0.279 Sum_probs=173.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~-------- 160 (555)
..+.|+++||++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 34579999999999988899999999999999999999999999999999999975 89999998743
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.+++ .|+.+|+...... ... ........
T Consensus 96 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~----------------------~~~~~~~~ 137 (267)
T PRK14235 96 VELRARVGMVFQKPNPFP-KSIYENVAYGPRI---------------HGL----------------------ARSKAELD 137 (267)
T ss_pred HHHhhceEEEecCCCCCC-CcHHHHHHHHHHh---------------ccc----------------------ccchHHHH
Confidence 24899999988765 5999998532100 000 00011223
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 138 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiii 217 (267)
T PRK14235 138 EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVI 217 (267)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 45677788888853 245778899999999999999999999999999999999999999999998853 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||||++++..+||+|++|++|++. ..|..+++
T Consensus 218 vtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 249 (267)
T PRK14235 218 VTHSMQQAARVSQRTAFFHLGNLV-EVGDTEKM 249 (267)
T ss_pred EEcCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999874 45665554
No 183
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=349.38 Aligned_cols=208 Identities=23% Similarity=0.370 Sum_probs=175.7
Q ss_pred ccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
++|+++||++.|++ +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 46999999999974 5699999999999999999999999999999999999999999999998532 58
Q ss_pred EEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 164 g~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+|++|++. .++..||.+|+...... . .....+...++.++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 124 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLEN---------------I------------------------GVPREEMVERVDQA 124 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhh---------------C------------------------CCCHHHHHHHHHHH
Confidence 99999974 56678999998532100 0 00112234567888
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
++.+||. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 125 LRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred HHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 8999996 567889999999999999999999999999999999999999999999988753 38999999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+. .||+|++|++|++ .+.|+..++.
T Consensus 204 ~~-~~d~i~~l~~G~i-~~~g~~~~~~ 228 (279)
T PRK13635 204 AA-QADRVIVMNKGEI-LEEGTPEEIF 228 (279)
T ss_pred HH-cCCEEEEEECCEE-EEECCHHHHh
Confidence 97 5999999999987 4667766554
No 184
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-42 Score=339.39 Aligned_cols=206 Identities=27% Similarity=0.429 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|.++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 478999999988889999999999999999999999999999999999999999999998753 359999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.++...|+.+|+...+.. . .......+.++..+++.+|+.
T Consensus 81 ~~~~~~~t~~~nl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (232)
T cd03300 81 YALFPHLTVFENIAFGLRL---------------K------------------------KLPKAEIKERVAEALDLVQLE 121 (232)
T ss_pred cccCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCc
Confidence 9887788999987532110 0 001112244567788889996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||++|||++++..+||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 122 -GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred -hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 567888999999999999999999999999999999999999999999988753 389999999999999999999
Q ss_pred eEEecCCeEeeccCChHHH
Q 008750 326 IVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~ 344 (555)
|++|++|++. +.|...++
T Consensus 201 i~~l~~G~~~-~~~~~~~~ 218 (232)
T cd03300 201 IAVMNKGKIQ-QIGTPEEI 218 (232)
T ss_pred EEEEECCEEE-ecCCHHHH
Confidence 9999999975 45555443
No 185
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-42 Score=311.78 Aligned_cols=198 Identities=27% Similarity=0.438 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
.|+++++++..+. ..+|++|+|.|++||.+||||++|||||||+-+++|+..|++|+|.+.|.+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5899999998853 469999999999999999999999999999999999999999999998864
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.+||+|||.+.+.+++|..||++.+.. +.+ -...+....
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPle---------------L~g------------------------e~~~~~~~~ 126 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLE---------------LRG------------------------ESSADSRAG 126 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhh---------------hcC------------------------CccccHHHH
Confidence 269999999999999999999875431 000 012234456
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSH 314 (555)
+.++|..+|+. ..++.+|.+|||||+|||+|||||+..|+||+.||||-+||.++-+.+.++| ++.|.|+|+|||
T Consensus 127 A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTH 205 (228)
T COG4181 127 AKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205 (228)
T ss_pred HHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeC
Confidence 78889999996 4668899999999999999999999999999999999999999887777765 567999999999
Q ss_pred CHHHHHhhcceeEEecCCeEe
Q 008750 315 DRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~ 335 (555)
|+.++.+ |+|++.|..|+++
T Consensus 206 D~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 206 DPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CHHHHHh-hhheeeeecceec
Confidence 9999976 9999999999874
No 186
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-42 Score=341.49 Aligned_cols=210 Identities=19% Similarity=0.281 Sum_probs=172.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC---CCC--CceEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ---EEP--DSGNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~---~~p--~~G~I~~~g~~~--------- 161 (555)
++|+++|+++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+ ++| ++|+|.++|.+.
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 568999999999888899999999999999999999999999999999997 455 589999987432
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.++|++|++.++. .|+.+|+...+.. .. . ......+..
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~---------------~~-~----------------------~~~~~~~~~ 122 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRV---------------NG-V----------------------KDNAFIRQR 122 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHH---------------cC-C----------------------CcHHHHHHH
Confidence 4999999987765 6999988532100 00 0 000112345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivt 202 (250)
T PRK14245 123 VEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT 202 (250)
T ss_pred HHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 667788888753 245788999999999999999999999999999999999999999999998854 478999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||+|++|++|++ .+.|...++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~~-~~~~~~~~~~ 233 (250)
T PRK14245 203 HNMQQAARVSDKTAFFYMGEM-VEYDDTKKIF 233 (250)
T ss_pred CCHHHHHhhCCEEEEEECCEE-EEECCHHHHh
Confidence 999999999999999999987 4567766554
No 187
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-42 Score=340.88 Aligned_cols=209 Identities=22% Similarity=0.382 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-C----CceEEEEcCCC--------
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-P----DSGNVIKAKSN-------- 160 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p----~~G~I~~~g~~-------- 160 (555)
++++||+..|.. ..+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 789999999943 469999999999999999999999999999999999997 4 57999999863
Q ss_pred ------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc-C
Q 008750 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV-N 231 (555)
Q Consensus 161 ------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 231 (555)
..|+|+||++. +.+.+||.+-+...+... ... .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--------------------------------------~~~~~ 123 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--------------------------------------GKGLS 123 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--------------------------------------hcchh
Confidence 26999999984 456667766554322100 000 1
Q ss_pred cccHHHHHHHHhhhcCCCcc--ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CC
Q 008750 232 LDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~ 305 (555)
..+..+++.++|+.+||+.. ..+.+|++|||||||||.||.||+.+|++||.||||++||+.....+.++|+ +.
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~ 203 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK 203 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence 23456788999999999854 6799999999999999999999999999999999999999999888888764 47
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|.|+|+||||+..+.++||||+||..|+++. .|+..++.
T Consensus 204 ~~aiilITHDl~vva~~aDri~VMYaG~iVE-~g~~~~i~ 242 (316)
T COG0444 204 GTALILITHDLGVVAEIADRVAVMYAGRIVE-EGPVEEIF 242 (316)
T ss_pred CCEEEEEeCCHHHHHHhcceEEEEECcEEEE-eCCHHHHh
Confidence 9999999999999999999999999999865 45554443
No 188
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.3e-42 Score=341.96 Aligned_cols=200 Identities=27% Similarity=0.377 Sum_probs=167.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-LRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-cCEEEeccccccccc
Confidence 4699999999998888999999999999999999999999999999999999999999999863 469999999876544
Q ss_pred --ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 176 --RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 176 --~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
.|+.+++... ......++..+++.+|+. ...
T Consensus 82 l~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~l~~~gl~-~~~ 114 (251)
T PRK09544 82 LPLTVNRFLRLR----------------------------------------------PGTKKEDILPALKRVQAG-HLI 114 (251)
T ss_pred cChhHHHHHhcc----------------------------------------------ccccHHHHHHHHHHcCCh-HHH
Confidence 3555443110 000123456678888885 456
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||||++++..+||+|++|
T Consensus 115 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 115 DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 788999999999999999999999999999999999999999999888743 3899999999999999999999999
Q ss_pred cCCeEeeccCChHHHH
Q 008750 330 EMGVSRTYEGNYSQYV 345 (555)
Q Consensus 330 ~~G~~~~~~G~y~~~~ 345 (555)
++ ++ ...|+.+++.
T Consensus 195 ~~-~i-~~~g~~~~~~ 208 (251)
T PRK09544 195 NH-HI-CCSGTPEVVS 208 (251)
T ss_pred CC-ce-EeeCCHHHHh
Confidence 75 44 4667766543
No 189
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-42 Score=340.54 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=172.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCCCc----------eE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~g~~~----------~i 163 (555)
+|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4899999999998889999999999999999999999999999999999974 7999999988542 48
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++ .|+.+|+..... ..... ........++.+++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~---------------~~~~~----------------------~~~~~~~~~~~~~l 123 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPK---------------LHGMI----------------------KNKDEEEALVVDCL 123 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHh---------------hcCcc----------------------cChHHHHHHHHHHH
Confidence 99999988765 699999753210 00000 00012234566778
Q ss_pred hhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHH
Q 008750 244 PELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (555)
Q Consensus 244 ~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~ 318 (555)
+.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|+|+||||+++
T Consensus 124 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred HHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8888852 345778899999999999999999999999999999999999999999988854 48899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+..+||+|++|++|++. ..|...++
T Consensus 204 ~~~~~d~i~~l~~G~i~-~~g~~~~~ 228 (246)
T PRK14269 204 GKRVADYTAFFHLGELI-EFGESKEF 228 (246)
T ss_pred HHhhCcEEEEEECCEEE-EECCHHHH
Confidence 99999999999999975 44655544
No 190
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-42 Score=358.22 Aligned_cols=198 Identities=26% Similarity=0.416 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ce
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ 162 (555)
+|++ ||+++|+++. + |+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~-~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 4778 9999998754 3 8999999999999999999999999999999999999999998742 25
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++.+||.+|+...... ....++.++
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~ 112 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK---------------------------------------------SMVAQFDKI 112 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh---------------------------------------------hhHHHHHHH
Confidence 89999999998899999998532100 012346778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||+++
T Consensus 113 l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 113 VALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 8889996 467899999999999999999999999999999999999999999988887753 48999999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+..+||+|++|++|++. ..|+..++
T Consensus 192 ~~~~~d~i~~l~~G~i~-~~g~~~~i 216 (352)
T PRK11144 192 ILRLADRVVVLEQGKVK-AFGPLEEV 216 (352)
T ss_pred HHHhCCEEEEEeCCEEE-EecCHHHH
Confidence 99999999999999974 45655544
No 191
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-42 Score=377.10 Aligned_cols=208 Identities=31% Similarity=0.531 Sum_probs=182.1
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc--c
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE--V 172 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~--~ 172 (555)
.++|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..+||++|++. +
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcccccccC
Confidence 35799999999998888999999999999999999999999999999999999999999999864 57999999974 3
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
+...|+.+++.... .....+.++.++++.+|+....
T Consensus 396 ~~~~t~~~~~~~~~--------------------------------------------~~~~~~~~~~~~l~~~~l~~~~ 431 (530)
T PRK15064 396 ENDLTLFDWMSQWR--------------------------------------------QEGDDEQAVRGTLGRLLFSQDD 431 (530)
T ss_pred CCCCcHHHHHHHhc--------------------------------------------cCCccHHHHHHHHHHcCCChhH
Confidence 34679988763100 0001134567788999986456
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
.++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|++.+.|||+||||++++..+||+|++|++|
T Consensus 432 ~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 432 IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred eEeeccCChHHHHHH
Q 008750 333 VSRTYEGNYSQYVLE 347 (555)
Q Consensus 333 ~~~~~~G~y~~~~~~ 347 (555)
++..+.|++.++...
T Consensus 512 ~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 512 GVVDFSGTYEEYLRS 526 (530)
T ss_pred eEEEcCCCHHHHHHH
Confidence 987789999887654
No 192
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-42 Score=329.06 Aligned_cols=206 Identities=24% Similarity=0.470 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------eEEEEeccc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------~ig~v~Q~~ 170 (555)
.+++++|+++||++.+++|+||++++|++.|++|+|||||||.+|+|.|+++|++|+|.|+|.+. +|||+|.+-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 48999999999999999999999999999999999999999999999999999999999998653 699999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++.+||.|.+... .....++..++..++..+|+.+++.
T Consensus 82 GLy~k~tv~dql~yl---------------------------------------a~LkGm~~~e~~~~~~~wLer~~i~- 121 (300)
T COG4152 82 GLYPKMTVEDQLKYL---------------------------------------AELKGMPKAEIQKKLQAWLERLEIV- 121 (300)
T ss_pred ccCccCcHHHHHHHH---------------------------------------HHhcCCcHHHHHHHHHHHHHhcccc-
Confidence 999999999876421 0112455667788899999999996
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHHhhcceeE
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
....+++.+||-|.+|++.+..+++++|+++|||||+|||||.+.+.|.+.+ ++.|.|||++||.++-++.+||+++
T Consensus 122 ~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 4668889999999999999999999999999999999999999999998875 5689999999999999999999999
Q ss_pred EecCCeEeeccCChHH
Q 008750 328 ETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 328 ~l~~G~~~~~~G~y~~ 343 (555)
+|++|.. +..|+..+
T Consensus 202 mL~kG~~-V~~G~v~~ 216 (300)
T COG4152 202 MLKKGQT-VLYGTVED 216 (300)
T ss_pred eecCCce-EEeccHHH
Confidence 9999986 45676543
No 193
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-42 Score=341.37 Aligned_cols=209 Identities=21% Similarity=0.305 Sum_probs=170.5
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~---------- 160 (555)
++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 46899999999988889999999999999999999999999999999999997 489999998743
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.++ ..||.+|+...... .. . ...+..+.+
T Consensus 83 ~~~~i~~~~q~~~~~-~~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 123 (251)
T PRK14251 83 LRKEVGMVFQQPTPF-PFSVYDNVAYGLKI---------------AG-V----------------------KDKELIDQR 123 (251)
T ss_pred hhccEEEEecCCccC-CCcHHHHHHHHHHH---------------cC-C----------------------CCHHHHHHH
Confidence 2499999998775 47999998532110 00 0 000112234
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+. ....++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiis 203 (251)
T PRK14251 124 VEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVT 203 (251)
T ss_pred HHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 55667777773 1345788899999999999999999999999999999999999999999988864 378999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++.. .|..+++
T Consensus 204 H~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14251 204 HNLQQAGRISDQTAFLMNGDLIE-AGPTEEM 233 (251)
T ss_pred CCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999754 4555443
No 194
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=343.27 Aligned_cols=212 Identities=18% Similarity=0.273 Sum_probs=174.2
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~------- 161 (555)
...+|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3457999999999988899999999999999999999999999999999999996 5899999987432
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.|+|++|++.+++ .||.+|+..+... .. .......+
T Consensus 97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~---------------~~-----------------------~~~~~~~~ 137 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFA-KSIYENITFALER---------------AG-----------------------VKDKKVLD 137 (267)
T ss_pred HHHhcceEEEecCCcccc-ccHHHHHHhHHHh---------------cC-----------------------CCCHHHHH
Confidence 4899999987755 6999998543110 00 00011223
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||+
T Consensus 138 ~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 217 (267)
T PRK14237 138 EIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIII 217 (267)
T ss_pred HHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 45666777777742 346788999999999999999999999999999999999999999999888753 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||++++..+||+|++|++|++. ..|+..++.
T Consensus 218 ~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 250 (267)
T PRK14237 218 VTHNMQQAARASDYTAFFYLGDLI-EYDKTRNIF 250 (267)
T ss_pred EecCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999975 556666553
No 195
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-42 Score=323.97 Aligned_cols=210 Identities=24% Similarity=0.389 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
++++++||+..||..++|++|||++++||+++|+|+||+|||||||+|+|+.+|.+|+|.++|.++ .|+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 569999999999999999999999999999999999999999999999999999999999999764 599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
||||.-.+|+.+||.||+..+....-.. ......++++.+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~----------------------------------------~~~~~~~e~v~~ 121 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDK----------------------------------------EAQERDLEEVYE 121 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccc----------------------------------------ccccccHHHHHH
Confidence 9999999999999999997542110000 000000111111
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~ 320 (555)
.|---.+..++...+|||||||.++|||||+.+|++|||||||.+|-|...+.+.+.++ +.|.||++|.++..++.
T Consensus 122 lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al 201 (237)
T COG0410 122 LFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFAL 201 (237)
T ss_pred HChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHH
Confidence 11111245577889999999999999999999999999999999999999888887764 34789999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+++||.++|++|++ ++.|+-++...
T Consensus 202 ~iaDr~yvle~Gri-v~~G~~~eL~~ 226 (237)
T COG0410 202 EIADRGYVLENGRI-VLSGTAAELLA 226 (237)
T ss_pred HhhCEEEEEeCCEE-EEecCHHHHhc
Confidence 99999999999996 67888766554
No 196
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=342.14 Aligned_cols=212 Identities=20% Similarity=0.279 Sum_probs=172.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCCCc-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSNM------- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~g~~~------- 161 (555)
.+++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 3457999999999988889999999999999999999999999999999999987 3 699999987532
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++.+++ .|+.+|+...... .. ........
T Consensus 89 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~ 129 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFP-QSIFDNVAYGPRI---------------HG-----------------------TKNKKKLQ 129 (259)
T ss_pred HHHhhceEEEecCCcccc-cCHHHHHHhHHHh---------------cC-----------------------CCCHHHHH
Confidence 4899999988765 4999987532100 00 00001123
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+|+.. ...++++.+||||||||++|||+|+.+|++|||||||++||+.++..+.++|.+ .+.|+|+
T Consensus 130 ~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 209 (259)
T PRK14274 130 EIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVI 209 (259)
T ss_pred HHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 34566677777742 245788899999999999999999999999999999999999999999988754 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||++++.++||+|++|++|++. ..|+..++.
T Consensus 210 vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 242 (259)
T PRK14274 210 VTHNMQQAARVSDQTAFFYMGELV-ECNDTNKMF 242 (259)
T ss_pred EEcCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999974 457766554
No 197
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=340.46 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=170.2
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CC---CceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EP---DSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p---~~G~I~~~g~~---------- 160 (555)
++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+. .| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4699999999998888999999999999999999999999999999999995 46 59999998743
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.++. .|+.+|+...... .. . ........+
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 124 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRL---------------KG-I----------------------KDKQVLDEA 124 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHH---------------cC-C----------------------CcHHHHHHH
Confidence 25999999987755 8999998532100 00 0 000112334
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+..+++.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 204 (252)
T PRK14239 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204 (252)
T ss_pred HHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 556677777632 245788899999999999999999999999999999999999999999988864 368999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++. +.|...+.
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 234 (252)
T PRK14239 205 RSMQQASRISDRTGFFLDGDLI-EYNDTKQM 234 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 55665554
No 198
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-42 Score=337.71 Aligned_cols=206 Identities=30% Similarity=0.424 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|+++|++++|++. +|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4789999999765 8999999999999999999999999999999999999999999998753 259999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...... . ..........+.++++.+|+.
T Consensus 80 ~~~~~~~t~~e~l~~~~~~----------------~-----------------------~~~~~~~~~~~~~~l~~~~l~ 120 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKK----------------R-----------------------KVDKKEIERKVLEIAEMLGID 120 (235)
T ss_pred CccCCCccHHHHHHHHHHH----------------c-----------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 8887788999997532100 0 001112334567788889996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|++||++.++..+||+
T Consensus 121 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 121 -HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred -hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 567888999999999999999999999999999999999999999999998753 389999999999999999999
Q ss_pred eEEecCCeEeeccCChHHHH
Q 008750 326 IVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~~ 345 (555)
|++|++|++. ..|+++++.
T Consensus 200 i~~l~~G~i~-~~~~~~~~~ 218 (235)
T cd03299 200 VAIMLNGKLI-QVGKPEEVF 218 (235)
T ss_pred EEEEECCEEE-EecCHHHHH
Confidence 9999999874 556666543
No 199
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-42 Score=334.04 Aligned_cols=192 Identities=30% Similarity=0.452 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~i 163 (555)
+.+ ||+|+|+++.+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 345 99999988766 99999999 9999999999999999999999999999999998743 159
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..|+.+|+...... ......+.++.+++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l 116 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKR-----------------------------------------KRNREDRISVDELL 116 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhh-----------------------------------------CCHHHHHHHHHHHH
Confidence 9999999887888999997532100 00001234567788
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l 319 (555)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.+++ .|.|||+||||++++
T Consensus 117 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 117 DLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred HHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 888986 456888999999999999999999999999999999999999999999988753 388999999999999
Q ss_pred HhhcceeEEecCCeEe
Q 008750 320 DQLCTKIVETEMGVSR 335 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~ 335 (555)
..+||++++|++|++.
T Consensus 196 ~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 196 EYLADRIVVMEDGRLQ 211 (214)
T ss_pred HHhcCEEEEEECCEEE
Confidence 9999999999999874
No 200
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=340.21 Aligned_cols=210 Identities=20% Similarity=0.321 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~g~~~---------- 161 (555)
+|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 589999999999888999999999999999999999999999999999999874 89999987432
Q ss_pred --eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 --~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.++|++|++.+++..|+.+|+....... . .. ......+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---------------~-~~----------------------~~~~~~~~~ 125 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLA---------------G-IR----------------------DRDHLMEVA 125 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhc---------------C-CC----------------------CHHHHHHHH
Confidence 5999999998877789999985422100 0 00 000112223
Q ss_pred HHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
.+++..+++. ....++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||++||
T Consensus 126 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 205 (252)
T PRK14272 126 ERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH 205 (252)
T ss_pred HHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 3344444432 1234778899999999999999999999999999999999999999999988764 3689999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|++++..+||+|++|++|++. ..|..+++.
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 235 (252)
T PRK14272 206 NMHQAARVSDTTSFFLVGDLV-EHGPTDQLF 235 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999874 556655543
No 201
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=340.41 Aligned_cols=210 Identities=19% Similarity=0.267 Sum_probs=172.1
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~-------- 161 (555)
.++|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4679999999999888899999999999999999999999999999999999875 799999987432
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.++|++|++.++. .|+.+|+...... .. . ........
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~ 122 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI---------------HG-I----------------------KDKKELDK 122 (251)
T ss_pred HHHhheEEEecCCCcCC-CcHHHHHHhHHHh---------------cC-C----------------------CcHHHHHH
Confidence 4899999988765 8999998532100 00 0 00011233
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+.. ...++++.+||||||||++|||||+.+|+||||||||++||+.++.++.+.|++ .+.|||+|
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiiv 202 (251)
T PRK14270 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIV 202 (251)
T ss_pred HHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4556677777632 345788999999999999999999999999999999999999999999988864 26899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++. ..|+.++.
T Consensus 203 sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (251)
T PRK14270 203 THNMQQASRVSDYTAFFLMGDLI-EFNKTEKI 233 (251)
T ss_pred EcCHHHHHHhcCEEEEEECCeEE-EeCCHHHH
Confidence 99999999999999999999975 44665544
No 202
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=339.01 Aligned_cols=209 Identities=25% Similarity=0.382 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCC------------------------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 97 GVKLENISKSYKG------------------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 97 ~i~l~nls~~y~~------------------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
.|+++||++-||. ..-++|+||+|+.||+..|.|-||||||||+|+|+++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4889999998864 1257999999999999999999999999999999999999999
Q ss_pred EEEEcCCCc--------------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Q 008750 153 NVIKAKSNM--------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218 (555)
Q Consensus 153 ~I~~~g~~~--------------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (555)
+|.++|.++ ++++|||.+.++|+.||.+|+..++.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe------------------------------- 132 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE------------------------------- 132 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee-------------------------------
Confidence 999998753 69999999999999999999865431
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHH
Q 008750 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298 (555)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l 298 (555)
.+.++..+.++++.++|+.+||. .+.+++|++|||||||||.|||||+.+|+|||+|||+|+|||-.+..+
T Consensus 133 --------v~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 133 --------VQGVPKAEREERALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred --------ecCCCHHHHHHHHHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 02344556678899999999996 678999999999999999999999999999999999999999776666
Q ss_pred HHH----HcCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 299 EGY----LGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 299 ~~~----l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+. .++.++||||||||++++.++.|||..|++|++ +..|...+.+.
T Consensus 204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i-vQ~Gtp~eIl~ 254 (386)
T COG4175 204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI-VQVGTPEEILL 254 (386)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE-EEeCCHHHHHc
Confidence 554 356799999999999999999999999999997 45677666554
No 203
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=339.56 Aligned_cols=208 Identities=20% Similarity=0.302 Sum_probs=168.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC-----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~----------- 160 (555)
.|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999888899999999999999999999999999999999999763 69999998743
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++ .|+.+|+...... .. ........+++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~---------------~~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRT---------------HG-----------------------IKDKKKLDEIV 123 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 24899999987765 8999988532100 00 00001123345
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
.++++.+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14240 124 EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 55666666531 245788899999999999999999999999999999999999999999988753 3789999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|++++.++||+|++|++|++. ..|+.+++
T Consensus 204 ~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (250)
T PRK14240 204 NMQQASRISDKTAFFLNGEIV-EFGDTVDL 232 (250)
T ss_pred CHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999975 44655544
No 204
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.3e-42 Score=332.55 Aligned_cols=189 Identities=28% Similarity=0.441 Sum_probs=161.3
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEE
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAF 165 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~ 165 (555)
++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 4799999988889999999999999999999999999999999999999999999998754 15999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..|+.+|+...... . .........++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~ 121 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY---------------K------------------------KLSKKEKREKKKEALEK 121 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887789999987532100 0 00111224467788889
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|+||||++++ .+
T Consensus 122 ~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~ 199 (206)
T TIGR03608 122 VGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQ 199 (206)
T ss_pred cCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hh
Confidence 9985 456888999999999999999999999999999999999999999999998854 488999999999987 47
Q ss_pred cceeEEe
Q 008750 323 CTKIVET 329 (555)
Q Consensus 323 ~dri~~l 329 (555)
||+|++|
T Consensus 200 ~d~i~~l 206 (206)
T TIGR03608 200 ADRVIEL 206 (206)
T ss_pred cCEEEeC
Confidence 9999875
No 205
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=344.54 Aligned_cols=211 Identities=21% Similarity=0.280 Sum_probs=170.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~-------- 160 (555)
..+.|+++||+++|++.++|+|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 4567999999999988889999999999999999999999999999999999864 499999998742
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.++. .||.+|+...... .. . .......
T Consensus 116 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~ 156 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRL---------------HG-I----------------------NDKKQLE 156 (286)
T ss_pred HHhhhcEEEECCCCCCCc-cCHHHHHHhHHHh---------------cC-C----------------------CcHHHHH
Confidence 25999999988765 5999998532100 00 0 0001122
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+
T Consensus 157 ~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIi 236 (286)
T PRK14275 157 EIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236 (286)
T ss_pred HHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 3445566666653 2345788899999999999999999999999999999999999999999998864 3579999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||||++++..+||+|++|++|++. ..|...++
T Consensus 237 vsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~ 268 (286)
T PRK14275 237 VTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQL 268 (286)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999974 55665544
No 206
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=342.96 Aligned_cols=197 Identities=20% Similarity=0.318 Sum_probs=162.8
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~------- 161 (555)
..++|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 4467999999999998889999999999999999999999999999999999987 6999999987532
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++.++. .||.+|+...... .. .. ...+
T Consensus 90 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~------------------------~~-~~~~ 128 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFP-KSIYENIAFGARI---------------NG------------------------YT-GDMD 128 (269)
T ss_pred HHHhhceEEEccCCccch-hhHHHHHhhhhhh---------------cC------------------------Cc-HHHH
Confidence 4999999987765 5999998532100 00 00 0112
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+++. ....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 129 ~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 208 (269)
T PRK14259 129 ELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208 (269)
T ss_pred HHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 2344455555552 1345788899999999999999999999999999999999999999999998853 3689999
Q ss_pred EecCHHHHHhhcceeEEecC
Q 008750 312 ISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~ 331 (555)
||||++++..+||+|++|++
T Consensus 209 vtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 209 VTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred EeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999997
No 207
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.7e-42 Score=331.60 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 47899999999988899999999999999999999999999999999999999999999987542 489999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..|+.+|+...... .. .....++.++++.+|
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~-~~~~~~~~~~l~~~g 118 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRL-----------------------------------------HG-PGDDEALWEALAQVG 118 (204)
T ss_pred CccccCcCCcHHHHHHHHHHh-----------------------------------------cC-ccHHHHHHHHHHHcC
Confidence 998887788999997532100 00 012345677888999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||+++++.+.+
T Consensus 119 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 119 LA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 86 356889999999999999999999999999999999999999999999998754 47899999999999999888
Q ss_pred eeEEe
Q 008750 325 KIVET 329 (555)
Q Consensus 325 ri~~l 329 (555)
|++++
T Consensus 198 ~~~~~ 202 (204)
T PRK13538 198 RKLRL 202 (204)
T ss_pred eEEec
Confidence 88877
No 208
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-42 Score=345.04 Aligned_cols=207 Identities=25% Similarity=0.397 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
++|+++|++++|+ ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4699999999995 46799999999999999999999999999999999999999999999987532 48
Q ss_pred EEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 164 g~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+|++|++. .++..|+.+|+...... ..........++.++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 126 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLEN---------------------------------------KKVPPKKMKDIIDDL 126 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999974 55678999998532100 000111233457778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~ 318 (555)
++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ . +.|||++|||+++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 127 AKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred HHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 8899986 467889999999999999999999999999999999999999999999988854 2 5899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+. .||+|++|++|++. ..|+..++
T Consensus 206 ~~-~~d~v~~l~~G~i~-~~g~~~~~ 229 (271)
T PRK13632 206 AI-LADKVIVFSEGKLI-AQGKPKEI 229 (271)
T ss_pred Hh-hCCEEEEEECCEEE-EecCHHHH
Confidence 96 79999999999974 45665544
No 209
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.7e-42 Score=335.14 Aligned_cols=195 Identities=27% Similarity=0.396 Sum_probs=164.4
Q ss_pred cEEEEeEEEEeCC-------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc--CC--C-----
Q 008750 97 GVKLENISKSYKG-------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA--KS--N----- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~-------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~--g~--~----- 160 (555)
+|+++||+++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++ |. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999962 469999999999999999999999999999999999999999999997 31 1
Q ss_pred ---------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 ---------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..++|++|++.+++..|+.+|+...... . ...
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----------------~-----------------------~~~ 121 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE----------------R-----------------------GVP 121 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH----------------c-----------------------CCC
Confidence 2589999999888889999987532100 0 001
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCce
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~t 308 (555)
.....+++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 201 (224)
T TIGR02324 122 REAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201 (224)
T ss_pred HHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 1122345677888899975455788999999999999999999999999999999999999999999988753 4889
Q ss_pred EEEEecCHHHHHhhcceeEEec
Q 008750 309 MVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~ 330 (555)
||+||||++++..+||+|+.+.
T Consensus 202 ii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 202 LIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred EEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999864
No 210
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.5e-41 Score=342.71 Aligned_cols=207 Identities=27% Similarity=0.397 Sum_probs=171.5
Q ss_pred ccEEEEeEEEEeC---------CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------
Q 008750 96 SGVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (555)
Q Consensus 96 ~~i~l~nls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------ 160 (555)
++|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 3689999999997 4689999999999999999999999999999999999999999999998853
Q ss_pred -------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 -------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..++|++|++. +++..|+.+++...... .. ...
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~--------------~~------------------------~~~ 123 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH--------------LL------------------------SLD 123 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh--------------hc------------------------cCC
Confidence 25999999973 44567898886422100 00 001
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCc
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDV 307 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~ 307 (555)
......++.++++.+|+.....++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.
T Consensus 124 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 203 (268)
T PRK10419 124 KAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203 (268)
T ss_pred HHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc
Confidence 1122345778888999965567889999999999999999999999999999999999999999888887642 488
Q ss_pred eEEEEecCHHHHHhhcceeEEecCCeEeeccCCh
Q 008750 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 308 tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y 341 (555)
|+|+||||++++..+||+|++|++|++. ..|..
T Consensus 204 tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~ 236 (268)
T PRK10419 204 ACLFITHDLRLVERFCQRVMVMDNGQIV-ETQPV 236 (268)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEe-eeCCh
Confidence 9999999999999999999999999874 44543
No 211
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1e-41 Score=332.46 Aligned_cols=196 Identities=26% Similarity=0.371 Sum_probs=166.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
++++||++.|+. ++.|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 478999999974 5789999999999999999999999999999999999999999998854 249999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...+.... ......+.++.++++.+|+.
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~l~ 119 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGL---------------------------------------KLNAEQQEKVVDAAQQVGIA 119 (213)
T ss_pred CccCCCCcHHHHHHhHhhccC---------------------------------------CccHHHHHHHHHHHHHcCcH
Confidence 988788899999853211000 00001234567788889996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|+|+||||++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 120 -DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred -HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 456889999999999999999999999999999999999999999988887743 478999999999999999999
Q ss_pred eEEecCCeEe
Q 008750 326 IVETEMGVSR 335 (555)
Q Consensus 326 i~~l~~G~~~ 335 (555)
+++|++|++.
T Consensus 199 v~~l~~g~i~ 208 (213)
T TIGR01277 199 IAVVSQGKIK 208 (213)
T ss_pred EEEEECCeEE
Confidence 9999999874
No 212
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=346.06 Aligned_cols=208 Identities=22% Similarity=0.325 Sum_probs=173.2
Q ss_pred ccEEEEeEEEEeCC------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------
Q 008750 96 SGVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------- 161 (555)
++|+++||+++|++ +++|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 56999999999963 4699999999999999999999999999999999999999999999987432
Q ss_pred ---eEEEEeccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ---KIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ---~ig~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.+||++|++.. ++..||.+|+...... ..+.......
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~---------------------------------------~~~~~~~~~~ 123 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPEN---------------------------------------LGIPPEEIRE 123 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhh---------------------------------------cCCCHHHHHH
Confidence 48999999742 3456888887432100 0011122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..|.+.|++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvt 202 (280)
T PRK13633 124 RVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202 (280)
T ss_pred HHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 678889999996 567899999999999999999999999999999999999999999999988753 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++.. ||++++|++|++. +.|+..++.
T Consensus 203 H~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~ 232 (280)
T PRK13633 203 HYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIF 232 (280)
T ss_pred cChHHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence 99999976 9999999999864 567766654
No 213
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-41 Score=356.32 Aligned_cols=197 Identities=26% Similarity=0.396 Sum_probs=168.2
Q ss_pred eEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEEEe
Q 008750 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (555)
Q Consensus 102 nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~v~ 167 (555)
||+++|++..+ |+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999987654 9999999999999999999999999999999999999999998742 2489999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++.+||.+|+...... ....+...++.++++.+|
T Consensus 82 q~~~l~~~~tv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~g 120 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKR-----------------------------------------ARPSERRISFERVIELLG 120 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhc-----------------------------------------cChhHHHHHHHHHHHHcC
Confidence 999888889999998532110 001122345778889999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~ 323 (555)
+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|+||||++++..+|
T Consensus 121 L~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 121 IG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred Ch-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 96 467899999999999999999999999999999999999999999988887753 4899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~ 343 (555)
|+|++|++|++. ..|...+
T Consensus 200 d~i~~l~~G~i~-~~g~~~~ 218 (354)
T TIGR02142 200 DRVVVLEDGRVA-AAGPIAE 218 (354)
T ss_pred CEEEEEeCCEEE-EECCHHH
Confidence 999999999974 4565544
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=343.14 Aligned_cols=210 Identities=19% Similarity=0.302 Sum_probs=172.3
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc------
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------ 161 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~------ 161 (555)
...++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 34678999999999988889999999999999999999999999999999999987 6899999987432
Q ss_pred ------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 162 ------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
.++|++|++.+++ .||.+|+...... . ... ...
T Consensus 115 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~------------------------~~~-~~~ 153 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFP-KSIYDNVAYGLKI---------------Q------------------------GYD-GDI 153 (285)
T ss_pred hHhhhccEEEEecCCccCc-CCHHHHHHHHHHH---------------c------------------------CCc-HHH
Confidence 4899999987755 4999987532100 0 000 012
Q ss_pred HHHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEE
Q 008750 236 DAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMV 310 (555)
Q Consensus 236 ~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvI 310 (555)
..++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++. +.|||
T Consensus 154 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tii 233 (285)
T PRK14254 154 DERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVV 233 (285)
T ss_pred HHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 345667777788742 3457889999999999999999999999999999999999999999999888642 57999
Q ss_pred EEecCHHHHHhhcceeE-EecCCeEeeccCChHHH
Q 008750 311 IISHDRAFLDQLCTKIV-ETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~-~l~~G~~~~~~G~y~~~ 344 (555)
+||||++++..+|||++ +|++|++. ..|+..++
T Consensus 234 i~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~ 267 (285)
T PRK14254 234 IVTHNMQQAARISDKTAVFLTGGELV-EFDDTDKI 267 (285)
T ss_pred EEeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHH
Confidence 99999999999999975 67999975 45665544
No 215
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.3e-41 Score=338.82 Aligned_cols=206 Identities=20% Similarity=0.290 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCCC--------ceEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~g~~--------~~ig 164 (555)
.|+++||+++| ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..++
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 58999999999 66899999999999999999999999999999999999999 99999998854 2599
Q ss_pred EEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 165 FLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 165 ~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|++|++. +.+..|+.+++..... .......+.++.++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~ 121 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCL-----------------------------------------ALGKPADDATLTAA 121 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHH-----------------------------------------HcCCChHHHHHHHH
Confidence 9999974 3344577666532100 00001112456778
Q ss_pred hhhcCCCcc--ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH
Q 008750 243 MPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (555)
Q Consensus 243 l~~lgl~~~--~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~ 316 (555)
++.+|+... ..++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||+||||+
T Consensus 122 l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 122 LEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 888998642 45788999999999999999999999999999999999999999988887753 478999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+++..+||+|++|++|++ ...|+..++.
T Consensus 202 ~~~~~~~d~v~~l~~G~i-~~~~~~~~~~ 229 (254)
T PRK10418 202 GVVARLADDVAVMSHGRI-VEQGDVETLF 229 (254)
T ss_pred HHHHHhCCEEEEEECCEE-EEecCHHHHh
Confidence 999999999999999987 4567766554
No 216
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=338.01 Aligned_cols=209 Identities=22% Similarity=0.285 Sum_probs=170.8
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~---------- 160 (555)
++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred ceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 368999999999888899999999999999999999999999999999999874 89999998742
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.++. .|+++|+...... ... ......+..
T Consensus 82 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~---------------~~~-----------------------~~~~~~~~~ 122 (250)
T PRK14262 82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRI---------------HGV-----------------------KSKHKLDRI 122 (250)
T ss_pred hhhhEEEEecCCccCc-ccHHHHHHHHHHH---------------cCC-----------------------CcHHHHHHH
Confidence 25999999988765 8999998532110 000 000012234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|+|+||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~s 202 (250)
T PRK14262 123 VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVT 202 (250)
T ss_pred HHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 555666677642 235788899999999999999999999999999999999999999999998754 368999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++. ..|..+++
T Consensus 203 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14262 203 HNIGQAIRIADYIAFMYRGELI-EYGPTREI 232 (250)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 9999999999999999999975 45665544
No 217
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=342.58 Aligned_cols=211 Identities=23% Similarity=0.329 Sum_probs=172.8
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~--------- 160 (555)
.++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4679999999999988999999999999999999999999999999999999985 79999998743
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.+++ .|+.+|+....... . .....+....
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~~ 139 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH---------------K-----------------------LVPRKEFRGV 139 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhc---------------c-----------------------CCCHHHHHHH
Confidence 24899999988765 89999885321100 0 0001112234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||
T Consensus 140 ~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivs 219 (276)
T PRK14271 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219 (276)
T ss_pred HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 556677777753 235678899999999999999999999999999999999999999999988754 258999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||+|++|++|++. ..|..+++.
T Consensus 220 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 250 (276)
T PRK14271 220 HNLAQAARISDRAALFFDGRLV-EEGPTEQLF 250 (276)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999874 456655543
No 218
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2e-41 Score=335.85 Aligned_cols=206 Identities=32% Similarity=0.479 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 478999999998899999999999999999999999999999999999999999999998743 258999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...... . ........+.+.++++.+++.
T Consensus 81 ~~~~~~~t~~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEI---------------R------------------------KHPKAKIKARVEELLELVQLE 121 (237)
T ss_pred hhhccCCcHHHHHHhHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999987532100 0 000111234566788888886
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++.+.+|||||+||++|||||+.+|+++||||||++||+.+++++.++|.+ .+.|||++||+++++..+||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 122 -GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred -hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 567888999999999999999999999999999999999999999999998854 378999999999999999999
Q ss_pred eEEecCCeEeeccCChHHH
Q 008750 326 IVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~ 344 (555)
|++|++|++. ..|..+++
T Consensus 201 i~~l~~g~i~-~~~~~~~~ 218 (237)
T TIGR00968 201 IVVMSNGKIE-QIGSPDEV 218 (237)
T ss_pred EEEEECCEEE-EecCHHHH
Confidence 9999999975 45555544
No 219
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=338.29 Aligned_cols=205 Identities=22% Similarity=0.322 Sum_probs=165.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~g~~--------- 160 (555)
.++|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 356999999999988889999999999999999999999999999999999975 5 58999998753
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++ .|+.+|+...... .. .. .....+.
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---------------~~-~~----------------------~~~~~~~ 123 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRL---------------AG-VK----------------------DKAVLDE 123 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHH---------------cC-CC----------------------CHHHHHH
Confidence 25999999988766 7999997532100 00 00 0000122
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.+.++.+++. ....++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 124 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~v 203 (252)
T PRK14255 124 AVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILV 203 (252)
T ss_pred HHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEE
Confidence 334445555542 1245778899999999999999999999999999999999999999999988754 25899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeecc
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYE 338 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~ 338 (555)
|||++++.++||+|++|++|++..+.
T Consensus 204 sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 204 THSMHQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999986543
No 220
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=342.34 Aligned_cols=212 Identities=20% Similarity=0.296 Sum_probs=169.1
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~------- 161 (555)
..++|+++||++.|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 21 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred CceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 3567999999999988889999999999999999999999999999999999987 6999999987432
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++.+++ .|+.+|+...... .. ..+ ....+
T Consensus 101 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~---------------~~-~~~----------------------~~~~~ 141 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFP-KSIYDNVTYGPKI---------------HG-IKD----------------------KKTLD 141 (271)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHHHHHHHh---------------cC-CCc----------------------HHHHH
Confidence 4999999988755 5999998542110 00 000 00011
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
..+.++++.+++. ....++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 142 ~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 221 (271)
T PRK14238 142 EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIII 221 (271)
T ss_pred HHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEE
Confidence 2233344444321 1234678899999999999999999999999999999999999999999988754 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||++++..+||+|++|++|++. ..|...++.
T Consensus 222 vsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~ 254 (271)
T PRK14238 222 VTHNMQQAARISDKTAFFLNGYVN-EYDDTDKIF 254 (271)
T ss_pred EEcCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999974 456666543
No 221
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=345.20 Aligned_cols=208 Identities=23% Similarity=0.372 Sum_probs=174.6
Q ss_pred ccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc---eEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---GNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~---G~I~~~g~~~--------- 161 (555)
.+|+++|+++.|++ +++|+||||+|.+||++||+|+||||||||+++|+|+++|++ |+|.++|.+.
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999964 469999999999999999999999999999999999999998 8999988532
Q ss_pred -eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 -KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 -~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.|||++|++. .++..||.+|+...... ......+..+++
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~ 124 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLEN---------------------------------------RAVPRPEMIKIV 124 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHh---------------------------------------CCCCHHHHHHHH
Confidence 5899999984 55778999998532100 001112234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 125 ~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 125 RDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 7889999996 467899999999999999999999999999999999999999999999888753 48899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++++. .||+|++|++|++. ..|+..++.
T Consensus 204 ~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 231 (282)
T PRK13640 204 IDEAN-MADQVLVLDDGKLL-AQGSPVEIF 231 (282)
T ss_pred HHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 99995 79999999999975 556665543
No 222
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=8.5e-42 Score=357.46 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=174.2
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC----C--------------ce
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----N--------------MK 162 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~----~--------------~~ 162 (555)
.++.++|+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. + ..
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45677888888999999999999999999999999999999999999999999999873 1 25
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|+|++|++.+++..||.+|+..+... ..+.......++.++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~---------------------------------------~g~~~~~~~~~a~e~ 148 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM---------------------------------------QGMPEAERRKRVDEQ 148 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998889999998643100 001112234567888
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~ 318 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. +.++||||||||+++
T Consensus 149 le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 149 LELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred HHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999996 56789999999999999999999999999999999999999999999988764 248999999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+.++||||++|++|++. ..|+.+++.
T Consensus 228 ~~~l~DrI~vl~~G~iv-~~g~~~ei~ 253 (382)
T TIGR03415 228 ALKIGNRIAIMEGGRII-QHGTPEEIV 253 (382)
T ss_pred HHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999974 457665554
No 223
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2e-41 Score=386.01 Aligned_cols=214 Identities=23% Similarity=0.395 Sum_probs=168.8
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
...|+++||+|+|++ +++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 346999999999974 5799999999999999999999999999999999999999999999998653 5
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|+||+|++.+ |+.|++||+...-.. .. .+++.+.++. ..+.+.+..+
T Consensus 555 i~~v~Q~~~l-f~gTi~eNi~l~~~~-~~----~~~i~~al~~---------------------------~~l~~~i~~l 601 (710)
T TIGR03796 555 VAMVDQDIFL-FEGTVRDNLTLWDPT-IP----DADLVRACKD---------------------------AAIHDVITSR 601 (710)
T ss_pred eeEEecCChh-hhccHHHHhhCCCCC-CC----HHHHHHHHHH---------------------------hCCHHHHHhC
Confidence 9999999987 678999999643110 00 0000011100 0111111111
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhh
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~ 322 (555)
- .|++....+ ...+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|++.++|+|+|||+++.+..
T Consensus 602 p--~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~- 677 (710)
T TIGR03796 602 P--GGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD- 677 (710)
T ss_pred c--Ccccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-
Confidence 1 144332222 246899999999999999999999999999999999999999999998889999999999999975
Q ss_pred cceeEEecCCeEeeccCChHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+|++|++|+++ ..|++++..+
T Consensus 678 ~D~Iivl~~G~i~-~~G~~~~Ll~ 700 (710)
T TIGR03796 678 CDEIIVLERGKVV-QRGTHEELWA 700 (710)
T ss_pred CCEEEEEeCCEEE-EecCHHHHHH
Confidence 9999999999974 5788887654
No 224
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.5e-41 Score=383.68 Aligned_cols=255 Identities=23% Similarity=0.348 Sum_probs=186.2
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC--CceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~ 125 (555)
.+......+.+++.+....+++.+....+.+... .... .......|+++||+|+|+ ++++|+|+||+|++||+
T Consensus 407 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~--~~~~---~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~ 481 (686)
T TIGR03797 407 AVTQLSNTLISILAVIPLWERAKPILEALPEVDE--AKTD---PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF 481 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--CcCC---CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCE
Confidence 4444555555666666666666554332221110 0000 011234599999999995 35799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||+||||||||+|+|+|+++|++|+|.++|.+. .||||+|++.+ |+.|++||+..+.. ..
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~~~~~--~~---- 554 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL-MSGSIFENIAGGAP--LT---- 554 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc-CcccHHHHHhcCCC--CC----
Confidence 999999999999999999999999999999998653 59999999988 67899999975311 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+++...++. ..+...+..+-. |++.... ....+||||||||++|||||+
T Consensus 555 ~e~i~~al~~---------------------------a~l~~~i~~lp~--G~dt~ig-e~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 555 LDEAWEAARM---------------------------AGLAEDIRAMPM--GMHTVIS-EGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred HHHHHHHHHH---------------------------cCcHHHHHhccc--ccccccc-CCCCCCCHHHHHHHHHHHHHh
Confidence 0001111110 111112222111 3332222 223589999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++||||||||+||+.+++.+.+.|++.++|+|+|||+++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv-~~G~~~~Ll~ 673 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVV-QQGTYDELMA 673 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999998888999999999999965 9999999999974 6788887654
No 225
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=343.00 Aligned_cols=208 Identities=24% Similarity=0.408 Sum_probs=172.8
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
.++|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 456999999999975 3599999999999999999999999999999999999999999999998542 4
Q ss_pred EEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 163 ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
++|++|++. .++..|+.+|+...... . .........++.+
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~-----------------~----------------------~~~~~~~~~~~~~ 125 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLEN-----------------H----------------------AVPYDEMHRRVSE 125 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHh-----------------c----------------------CCCHHHHHHHHHH
Confidence 899999985 55667888887432100 0 0011122345677
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||++
T Consensus 126 ~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 126 ALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred HHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 88889986 466888999999999999999999999999999999999999999999888753 4789999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++.. ||+|++|++|++. +.|..+++
T Consensus 205 ~~~~-~d~i~~l~~G~i~-~~g~~~~~ 229 (269)
T PRK13648 205 EAME-ADHVIVMNKGTVY-KEGTPTEI 229 (269)
T ss_pred HHhc-CCEEEEEECCEEE-EecCHHHH
Confidence 9985 9999999999974 45666554
No 226
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=337.12 Aligned_cols=209 Identities=19% Similarity=0.278 Sum_probs=168.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~g~~---------- 160 (555)
+.|+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4699999999998888999999999999999999999999999999999999997 6999988742
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.+++ .|+.+|+...... ... ......+..
T Consensus 83 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 123 (251)
T PRK14249 83 LRKRVGMVFQQPNPFP-KSIFDNVAFGPRM---------------LGT-----------------------TAQSRLDEV 123 (251)
T ss_pred hhceEEEEecCCccCc-CcHHHHHhhHHHh---------------cCC-----------------------ChhhHHHHH
Confidence 24999999988765 5999998532100 000 000011223
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+..+++.+|+.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivs 203 (251)
T PRK14249 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVT 203 (251)
T ss_pred HHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 444455555431 245788899999999999999999999999999999999999999999888754 478999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++. +.|...+.
T Consensus 204 h~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 233 (251)
T PRK14249 204 HNMQQAARASDWTGFLLTGDLV-EYGRTGEI 233 (251)
T ss_pred CCHHHHHhhCCEEEEEeCCeEE-EeCCHHHH
Confidence 9999999999999999999874 44555443
No 227
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.9e-41 Score=336.84 Aligned_cols=213 Identities=22% Similarity=0.291 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCCC-----------ceE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~g~~-----------~~i 163 (555)
+|+++||++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 478999999998888999999999999999999999999999999999995 6999999999853 249
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..++.+++...... + ... .....+.......++.+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~----~~~------------------~~~~~~~~~~~~~~~~~~l 128 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNA----------V----RSY------------------RGQEPLDRFDFQDLMEEKI 128 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhh----------h----hcc------------------cccccchHHHHHHHHHHHH
Confidence 9999998776655654443211100 0 000 0000011123345677788
Q ss_pred hhcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l 319 (555)
+.++++....++.+. +|||||||||+|||||+.+|++|||||||++||+.+++++.+.++ +.+.|||+||||++++
T Consensus 129 ~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred HHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 889997556677775 799999999999999999999999999999999999999988664 4578999999999999
Q ss_pred Hhh-cceeEEecCCeEeeccCChH
Q 008750 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 320 ~~~-~dri~~l~~G~~~~~~G~y~ 342 (555)
..+ ||+|++|++|++ .+.|+++
T Consensus 209 ~~~~~d~i~~l~~g~i-~~~g~~~ 231 (248)
T PRK09580 209 DYIKPDYVHVLYQGRI-VKSGDFT 231 (248)
T ss_pred HhhhCCEEEEEECCeE-EEeCCHH
Confidence 887 899999999987 4567776
No 228
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=341.95 Aligned_cols=210 Identities=23% Similarity=0.296 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC--------ceEEEEcCCCc-------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--------SGNVIKAKSNM------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~--------~G~I~~~g~~~------- 161 (555)
+|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 489999999999889999999999999999999999999999999999999998 99999988532
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.++|++|++..++..|+.+|+......... . . ..........
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~-------------~-~---------------------~~~~~~~~~~ 125 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHAR-------------R-A---------------------GALTHRDGEI 125 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhccccccc-------------c-c---------------------ccCCHHHHHH
Confidence 379999998766778999998542100000 0 0 0000112345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc---------cCCCEEEEcCCCCCCCHHHHHHHHHHHcC----C
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~---------~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~ 305 (555)
+.++++.+|+.. ..++++.+|||||+|||+|||||+ .+|++|||||||++||+.+++++.++|++ .
T Consensus 126 ~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 204 (272)
T PRK13547 126 AWQALALAGATA-LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW 204 (272)
T ss_pred HHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc
Confidence 677888899863 568899999999999999999999 59999999999999999999999988753 3
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHH
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
+.|||+||||++++..+||+|++|++|++. +.|+..+
T Consensus 205 ~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 241 (272)
T PRK13547 205 NLGVLAIVHDPNLAARHADRIAMLADGAIV-AHGAPAD 241 (272)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCeEE-EecCHHH
Confidence 899999999999999999999999999874 4565444
No 229
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=343.16 Aligned_cols=208 Identities=24% Similarity=0.336 Sum_probs=173.7
Q ss_pred ccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
++|+++||+++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 36899999999974 3599999999999999999999999999999999999999999999987532 4
Q ss_pred EEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 163 ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
++|++|++. .++..||.+|+...... . ........+++..
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~----------------~-----------------------~~~~~~~~~~~~~ 123 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMEN----------------Q-----------------------GIPREEMIKRVDE 123 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHH----------------c-----------------------CCCHHHHHHHHHH
Confidence 899999974 55678999998532100 0 0011122345677
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|. +.|.|||+||||++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 124 ALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 88888985 46788999999999999999999999999999999999999999999988874 24899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++. .||+|++|++|+++ ..|+.+++.
T Consensus 203 ~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (277)
T PRK13642 203 EAA-SSDRILVMKAGEII-KEAAPSELF 228 (277)
T ss_pred HHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 997 59999999999974 567766654
No 230
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.6e-41 Score=375.33 Aligned_cols=258 Identities=24% Similarity=0.343 Sum_probs=187.0
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEe-CCceeeeeeeEEEECCCE
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~ 125 (555)
.++......+...+.+..+.+++.+....+..... ....... ......|+++||+|.| +++++|+|+||+|++|++
T Consensus 302 ~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~~~--~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~ 378 (588)
T PRK11174 302 QPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ-QGEKELA--SNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQR 378 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC-CCccccC--CCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCE
Confidence 34555555556677777777777665433221100 0000000 0112359999999766 567899999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||+||||||||+++|+|++ |++|+|.++|.+. .|+||+|++.+ |+.|++||+..+-.+ ..
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L-F~~TI~eNI~~g~~~-~~---- 451 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL-PHGTLRDNVLLGNPD-AS---- 451 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcC-CCcCHHHHhhcCCCC-CC----
Confidence 9999999999999999999999 9999999998653 59999999987 778999999754210 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHH
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
.+++.+.++. .. +.+.+..+ |++....++ ...||||||||++||||
T Consensus 452 ~eei~~al~~---------------------------a~----l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARA 499 (588)
T PRK11174 452 DEQLQQALEN---------------------------AW----VSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARA 499 (588)
T ss_pred HHHHHHHHHH---------------------------hC----HHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHH
Confidence 0000011100 01 11222222 444332222 45799999999999999
Q ss_pred hccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHH
Q 008750 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~ 348 (555)
|+.+|+|||||||||+||.++.+.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++ ...|++++....+
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i-~e~G~~~eL~~~~ 574 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQI-VQQGDYAELSQAG 574 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeE-eecCCHHHHHhcc
Confidence 9999999999999999999999999988764 4799999999999996 4999999999987 4678888876543
No 231
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.3e-41 Score=328.73 Aligned_cols=186 Identities=25% Similarity=0.412 Sum_probs=163.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~Q 168 (555)
|+++||++.|+++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 4789999999988999999999999999999999999999999999999999999999987542 5899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+++|+..... ...++++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~---------------------------------------------~~~~~~~~~~l~~~~l 115 (201)
T cd03231 81 APGIKTTLSVLENLRFWHA---------------------------------------------DHSDEQVEEALARVGL 115 (201)
T ss_pred ccccCCCcCHHHHHHhhcc---------------------------------------------cccHHHHHHHHHHcCC
Confidence 9888788999999753210 0013456677888888
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcce
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dr 325 (555)
. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|+||||...+..+|++
T Consensus 116 ~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 116 N-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred h-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccce
Confidence 6 346888999999999999999999999999999999999999999999998853 489999999999999999999
Q ss_pred eEEe
Q 008750 326 IVET 329 (555)
Q Consensus 326 i~~l 329 (555)
++++
T Consensus 195 ~~~~ 198 (201)
T cd03231 195 ELDL 198 (201)
T ss_pred eEec
Confidence 9887
No 232
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=378.81 Aligned_cols=212 Identities=21% Similarity=0.346 Sum_probs=178.1
Q ss_pred CccEEEEeEEEEeCC-----------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---
Q 008750 95 SSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~-----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--- 160 (555)
.++|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 367999999999961 469999999999999999999999999999999999999999999998742
Q ss_pred ----------ceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 008750 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (555)
Q Consensus 161 ----------~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (555)
..|+||+|++ .+++.+||.+++...+.. ..
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~---------------~~----------------------- 432 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV---------------HG----------------------- 432 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH---------------cC-----------------------
Confidence 2599999997 466788999998532100 00
Q ss_pred hcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----C
Q 008750 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (555)
Q Consensus 229 ~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~ 304 (555)
.........++.++|+.+||+....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +
T Consensus 433 ~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 433 LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000112345678899999996556789999999999999999999999999999999999999999999998873 3
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.|.|||+||||++++..+||+|++|++|+++ ..|...++.
T Consensus 513 ~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~~i~ 552 (623)
T PRK10261 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRRAVF 552 (623)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 5899999999999999999999999999974 567665543
No 233
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=336.47 Aligned_cols=208 Identities=19% Similarity=0.305 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~---------- 161 (555)
+|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999988899999999999999999999999999999999999986 599999987432
Q ss_pred -eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 -~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.++|++|++.+++ .||.+|+...... .. .. .....++++.
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~---------------~~-~~----------------------~~~~~~~~~~ 123 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRA---------------QG-IK----------------------DKKVLDEVVE 123 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHh---------------cC-CC----------------------chHHHHHHHH
Confidence 4899999988765 8999998532100 00 00 0011223445
Q ss_pred HHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecC
Q 008750 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (555)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd 315 (555)
++++.+|+.. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||+
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 203 (249)
T PRK14253 124 RSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS 203 (249)
T ss_pred HHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 5566666532 345778899999999999999999999999999999999999999999988764 36899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||+|++|++|++. ..|..+++
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 231 (249)
T PRK14253 204 MQQARRISDRTAFFLMGELV-EHDDTQVI 231 (249)
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999975 45655443
No 234
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.7e-41 Score=336.05 Aligned_cols=191 Identities=28% Similarity=0.446 Sum_probs=159.6
Q ss_pred EEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEe-cccccCc
Q 008750 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS-QEFEVSM 174 (555)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~-Q~~~~~~ 174 (555)
+.|+.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++ |++.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 55666789999999999999999999999999999999999999999999998753 2589997 5566767
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..|+.+|+..... +. .....+...++..+++.+|+. ...+
T Consensus 109 ~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~~~~ 148 (236)
T cd03267 109 DLPVIDSFYLLAA---------------IY------------------------DLPPARFKKRLDELSELLDLE-ELLD 148 (236)
T ss_pred CCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhc
Confidence 8899998742110 00 001112234566778888886 4568
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..+||+|++|+
T Consensus 149 ~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 88999999999999999999999999999999999999999999998753 37899999999999999999999999
Q ss_pred CCeEe
Q 008750 331 MGVSR 335 (555)
Q Consensus 331 ~G~~~ 335 (555)
+|++.
T Consensus 229 ~G~i~ 233 (236)
T cd03267 229 KGRLL 233 (236)
T ss_pred CCEEE
Confidence 99864
No 235
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-42 Score=314.19 Aligned_cols=197 Identities=25% Similarity=0.368 Sum_probs=172.3
Q ss_pred ccEEEEeEEEEeCCce--eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----eEEEEec
Q 008750 96 SGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQ 168 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----~ig~v~Q 168 (555)
+++.+++++.+|++++ +|+|||++|.+||.++++|||||||||||++++|+.+|+.|+|.++|..+ .-|.|+|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 4578899999998876 99999999999999999999999999999999999999999999987643 4699999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
+..+.+.+++.+|+..+++- ..++.....+.+.+++..+|+
T Consensus 82 ~~~LlPWl~~~dNvafgL~l---------------------------------------~Gi~k~~R~~~a~q~l~~VgL 122 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQL---------------------------------------RGIEKAQRREIAHQMLALVGL 122 (259)
T ss_pred cCccchhhHHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999998654310 112233345567888999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~d 324 (555)
.. ..++++.+|||||||||.|||||+.+|++|+||||+.+||.-+++.+.++| +..|+.+++||||++++.-+++
T Consensus 123 ~~-~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflat 201 (259)
T COG4525 123 EG-AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLAT 201 (259)
T ss_pred cc-ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhh
Confidence 74 458999999999999999999999999999999999999999888877765 5679999999999999999999
Q ss_pred eeEEecCC
Q 008750 325 KIVETEMG 332 (555)
Q Consensus 325 ri~~l~~G 332 (555)
++++|..|
T Consensus 202 rLvvlsp~ 209 (259)
T COG4525 202 RLVVLSPG 209 (259)
T ss_pred eeEEecCC
Confidence 99999854
No 236
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.1e-41 Score=330.77 Aligned_cols=197 Identities=26% Similarity=0.411 Sum_probs=167.3
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------- 160 (555)
|+++||++.|++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999964 679999999999999999999999999999999999999999999998753
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..++|++|++.+++..|+.+|+...... .. .....+...++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~---------------~~-----------------------~~~~~~~~~~~~ 123 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALEL---------------QP-----------------------NLSYQEARERAR 123 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHh---------------cc-----------------------CCCHHHHHHHHH
Confidence 2599999999887778999987532100 00 001122345677
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~ 316 (555)
++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||||+
T Consensus 124 ~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 124 AMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 889999995 566888999999999999999999999999999999999999999888887743 489999999999
Q ss_pred HHHHhhcceeEEecCCeE
Q 008750 317 AFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~ 334 (555)
+.. .+||+|++|++|++
T Consensus 203 ~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 203 RIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHH-hhCCEEEEEECCEE
Confidence 965 69999999999874
No 237
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=337.16 Aligned_cols=209 Identities=18% Similarity=0.264 Sum_probs=169.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~--------- 161 (555)
+.|+++||+++|++.++|+|+||+|.+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 359999999999888899999999999999999999999999999999999985 489999987431
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.|+|++|++.+++ .|+.+|+...... .. ..........
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~~ 126 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRI---------------SA-----------------------KLPQADLDEI 126 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHH---------------hc-----------------------CCCHHHHHHH
Confidence 5999999988765 8999998543110 00 0001112234
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+. ....++++.+|||||+|||+|||||+.+|++|||||||++||+.+..++.++|++ .+.|||+||
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~t 206 (259)
T PRK14260 127 VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVT 206 (259)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 55566666663 1345788899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcceeEEec-----CCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETE-----MGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~-----~G~~~~~~G~y~~~ 344 (555)
||++++..+||++++|+ +|+++ ..|+..++
T Consensus 207 H~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~~ 241 (259)
T PRK14260 207 HNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQI 241 (259)
T ss_pred CCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHHH
Confidence 99999999999999997 48764 55666554
No 238
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.1e-41 Score=335.89 Aligned_cols=215 Identities=20% Similarity=0.287 Sum_probs=172.7
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~----------- 161 (555)
+++|+++||++.|+++.+|+||||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3469999999999888899999999999999999999999999999999998 589999999987431
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.++|++|++.+++..|+.+++...+..... ... .. .........++.+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~-----------~~~-~~--------------------~~~~~~~~~~~~~ 132 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRK-----------FQG-LP--------------------ELDPLEFLEIINE 132 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhc-----------ccc-cc--------------------cccHHHHHHHHHH
Confidence 378999998887778888886432110000 000 00 0001122345677
Q ss_pred HhhhcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
+++.+|+.....++.+. .|||||+|||+|||||+.+|+||||||||++||+.+++++.+.|++ .+.|||+||||++
T Consensus 133 ~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 133 KLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred HHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 88999996445677776 5999999999999999999999999999999999999999988753 4899999999999
Q ss_pred HHHhh-cceeEEecCCeEeeccCChH
Q 008750 318 FLDQL-CTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 318 ~l~~~-~dri~~l~~G~~~~~~G~y~ 342 (555)
++..+ ||+|++|++|++. +.|+.+
T Consensus 213 ~~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 213 LLDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHHhhhCCEEEEEeCCEEE-EecChh
Confidence 99887 8999999999874 556544
No 239
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-41 Score=336.70 Aligned_cols=213 Identities=17% Similarity=0.290 Sum_probs=174.0
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC------CC-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SN------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g------~~------- 160 (555)
..++|.++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 45679999999999999999999999999999999999999999999999999999997766554 22
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++..|+.+|+...... .. .....+...
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~ 128 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKS---------------HG-----------------------IKEKREIKK 128 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHh---------------cC-----------------------CCCHHHHHH
Confidence 2589999999887788999998532100 00 000112234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+.. ...++.+..||||||||++|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|||+|
T Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilv 208 (257)
T PRK14246 129 IVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIV 208 (257)
T ss_pred HHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEE
Confidence 5667777788742 345778899999999999999999999999999999999999999999998854 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||++++..+||++++|++|++.. .|..+++.
T Consensus 209 sh~~~~~~~~~d~v~~l~~g~i~~-~g~~~~~~ 240 (257)
T PRK14246 209 SHNPQQVARVADYVAFLYNGELVE-WGSSNEIF 240 (257)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999998754 45544443
No 240
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-41 Score=335.33 Aligned_cols=208 Identities=19% Similarity=0.304 Sum_probs=169.2
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-----------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM----------- 161 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~----------- 161 (555)
-+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 478999999988889999999999999999999999999999999999986 4799999987431
Q ss_pred -eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 -~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.++|++|++.+++ .|+.+|+..... ..... .........+.
T Consensus 86 ~~i~~v~q~~~~~~-~tv~~ni~~~~~---------------~~~~~----------------------~~~~~~~~~~~ 127 (251)
T PRK14244 86 AKVGMVFQKPNPFP-KSIYDNVAYGPK---------------LHGLA----------------------KNKKKLDEIVE 127 (251)
T ss_pred hhEEEEecCccccc-CCHHHHHHHHHH---------------hcCCC----------------------CCHHHHHHHHH
Confidence 4899999987765 499998753210 00000 00011233466
Q ss_pred HHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecC
Q 008750 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (555)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd 315 (555)
++++.+|+.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||||
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 7788888853 235678899999999999999999999999999999999999999999888753 37899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++.++||+|++|++|++. +.|..+++
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 235 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIV-EYNTTQEI 235 (251)
T ss_pred HHHHHhhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999874 45665544
No 241
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.8e-41 Score=330.87 Aligned_cols=191 Identities=29% Similarity=0.490 Sum_probs=154.7
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 899999999975 579999999999999999999999999999999999999999999998853 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++ .|+.+|+....... ....+.++++.
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~~---------------------------------------------~~~~~~~~l~~ 116 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPLA---------------------------------------------DDERILRAAEL 116 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCCC---------------------------------------------CHHHHHHHHHH
Confidence 999987754 69999875321000 00011112222
Q ss_pred cCCCc----------cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEEe
Q 008750 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIIS 313 (555)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIiiS 313 (555)
+++.. ......+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++. +.|||+||
T Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 196 (220)
T cd03245 117 AGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIIT 196 (220)
T ss_pred cCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 22211 0123446799999999999999999999999999999999999999999988642 47999999
Q ss_pred cCHHHHHhhcceeEEecCCeEe
Q 008750 314 HDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~ 335 (555)
||++++ .+||+|++|++|++.
T Consensus 197 H~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 197 HRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred CCHHHH-HhCCEEEEEeCCeEe
Confidence 999987 699999999999874
No 242
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-41 Score=337.52 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=171.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~--------- 160 (555)
.++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 457999999999988889999999999999999999999999999999999987 489999998743
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++. |+.+|+...... .. . ........
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~ 143 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRL---------------QG-I----------------------NNRRVLDE 143 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHh---------------cC-C----------------------CcHHHHHH
Confidence 258999999877654 999998532100 00 0 00001123
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+++.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|.+ .+.|+|+|
T Consensus 144 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiiv 223 (272)
T PRK14236 144 AVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIV 223 (272)
T ss_pred HHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4555666667642 245778899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||++++..+||+|++|++|++. ..|..+++.
T Consensus 224 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 255 (272)
T PRK14236 224 THNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF 255 (272)
T ss_pred eCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence 99999999999999999999974 557666554
No 243
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1e-40 Score=372.73 Aligned_cols=255 Identities=22% Similarity=0.285 Sum_probs=185.7
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~ 126 (555)
++......+..++.+..+.+++++....+..... .. . .......|+++||+|+|++ .++|+|+||+|++||++
T Consensus 297 pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~--~~-~---~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~i 370 (592)
T PRK10790 297 PLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG--ND-D---RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFV 370 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC--CC-c---cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEE
Confidence 4444444455666777777776665433211100 00 0 0112345999999999964 57999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
||||+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ |+.|+++|+...-. .. .
T Consensus 371 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l-F~~Ti~~NI~~~~~--~~----d 443 (592)
T PRK10790 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV-LADTFLANVTLGRD--IS----E 443 (592)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc-ccchHHHHHHhCCC--CC----H
Confidence 99999999999999999999999999999998643 59999999988 66799999965310 00 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+++.+.++ ...+.+.+.++-+ |++... ......||||||||++|||||+.
T Consensus 444 ~~i~~a~~---------------------------~~gl~~~i~~lp~--Gldt~i-~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 444 EQVWQALE---------------------------TVQLAELARSLPD--GLYTPL-GEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred HHHHHHHH---------------------------HcCcHHHHHhccc--cccccc-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 00000000 0011122222211 333222 22345799999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+|+||||||||++||+++.+.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++. ..|++++.++.
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~-~~G~~~~L~~~ 564 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAV-EQGTHQQLLAA 564 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EEcCHHHHHhC
Confidence 9999999999999999999999988864 4799999999999987 59999999999974 57888887654
No 244
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=333.98 Aligned_cols=210 Identities=22% Similarity=0.284 Sum_probs=169.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~g~~--------- 160 (555)
.++|+++||++.|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.+
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 457999999999998889999999999999999999999999999999999975 3 48999998743
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++ .||.+|+...... .. .......+.
T Consensus 84 ~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~---------------~~-----------------------~~~~~~~~~ 124 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFP-KSIYENVAYGPRI---------------HG-----------------------EKNKKTLDT 124 (253)
T ss_pred hhhceEEEEecCCccCc-ccHHHHHHhhHHh---------------cC-----------------------CCCHHHHHH
Confidence 24899999988765 5999998532100 00 000011233
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
.+.++++.+++.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|.+ .+.|||++
T Consensus 125 ~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~ 204 (253)
T PRK14261 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIV 204 (253)
T ss_pred HHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEE
Confidence 4555666666532 235788899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++. ..|...++
T Consensus 205 sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14261 205 THNMQQAARVSDYTGFMYLGKLI-EFDKTTQI 235 (253)
T ss_pred EcCHHHHHhhCCEEEEEECCEEE-EcCCHHHH
Confidence 99999999999999999999974 45665544
No 245
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-41 Score=353.98 Aligned_cols=262 Identities=25% Similarity=0.342 Sum_probs=191.5
Q ss_pred hhhhhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEEC
Q 008750 44 RITCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKK 122 (555)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~ 122 (555)
...-++-..-..|+..+.+.+..+.++...+.+............ ....+..++++|+++.|++ +++++|+||++++
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~--~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~ 346 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV--ANEPPIEISLENLSFRYPDGKPALSDLNLTIKA 346 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc--ccCCCceeeecceEEecCCCCcccCCceeEecC
Confidence 334456666677777888888888877776655432211111000 1112233556699999965 4899999999999
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~ 192 (555)
|+++||||+||||||||+++|+|+.+|++|+|.++|.+. +++||+|+|.+ +..|++||+..+-...
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l-f~gTireNi~l~~~~~--- 422 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL-FAGTIRENILLARPDA--- 422 (559)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcc-ccccHHHHhhccCCcC---
Confidence 999999999999999999999999999999999998652 59999999988 7789999996542100
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh-cCCCccccCCCCCCCChHHHHHHHHH
Q 008750 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE-LGFTADDGDRLVASFSSGWQMRMSLG 271 (555)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-lgl~~~~~~~~~~~LSGGqrqRv~lA 271 (555)
..+++.+.++. ..+.+.++. -|++... ...-..|||||+|||+||
T Consensus 423 --s~e~i~~al~~-------------------------------a~l~~~v~~p~GLdt~i-ge~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 423 --SDEEIIAALDQ-------------------------------AGLLEFVPKPDGLDTVI-GEGGAGLSGGQAQRLALA 468 (559)
T ss_pred --CHHHHHHHHHH-------------------------------hcHHHhhcCCCcccchh-ccCCCCCCHHHHHHHHHH
Confidence 00001011100 011111221 2443222 223357999999999999
Q ss_pred HHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||+.+++++||||||+|||.++++.+.+.|.+ .++|+|+||||++.+.. ||+|++|++|++ ...|++++..+.
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l-~~~g~~~~L~~~ 544 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRL-VEQGTHEELSEK 544 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCce-eccCCHHHHhhc
Confidence 999999999999999999999999999998754 57999999999999976 999999999997 567888776554
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=335.92 Aligned_cols=209 Identities=18% Similarity=0.272 Sum_probs=166.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~-------- 161 (555)
.++|+++||+++|++.++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.+.
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 357999999999988889999999999999999999999999999999999986 4899999987432
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.++|++|++.+++ .|+.+|+....... . . .....+
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~------------------------~-~~~~~~ 126 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---------------G------------------------Y-KGDMDE 126 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---------------C------------------------c-chHHHH
Confidence 4999999987755 59999985421100 0 0 000112
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++..+++.+++.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||+|
T Consensus 127 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~v 206 (264)
T PRK14243 127 LVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIV 206 (264)
T ss_pred HHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 2333344444421 234678899999999999999999999999999999999999999999998753 35899999
Q ss_pred ecCHHHHHhhcceeEEec---------CCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~---------~G~~~~~~G~y~~~~ 345 (555)
|||++++.++||+|++|+ +|+++ ..|...++.
T Consensus 207 tH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~~~~~~ 247 (264)
T PRK14243 207 THNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDRTEKIF 247 (264)
T ss_pred ecCHHHHHHhCCEEEEEecccccccccCceEE-EeCCHHHHH
Confidence 999999999999999998 68764 556655543
No 247
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=334.04 Aligned_cols=210 Identities=20% Similarity=0.262 Sum_probs=171.5
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~g~~---------- 160 (555)
+.|+++||+++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3599999999998878999999999999999999999999999999999999985 8999988743
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.+++ .|+.||+...... .. . ....+..++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 126 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKI---------------VG-W----------------------RPKLEIDDI 126 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC-C----------------------CcHHHHHHH
Confidence 14999999987765 8999987532100 00 0 000112234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEE
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVI 311 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIi 311 (555)
+.++++.+|+.. ...++++.+|||||+||++|||+|+.+|++|||||||++||+.++..+.++|++ .+.|||+
T Consensus 127 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii 206 (261)
T PRK14258 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206 (261)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 566777777632 245788899999999999999999999999999999999999999999888753 4899999
Q ss_pred EecCHHHHHhhcceeEEecC-----CeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEM-----GVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~-----G~~~~~~G~y~~~~ 345 (555)
||||++++..+||+|++|++ |++ ++.|...++.
T Consensus 207 vsH~~~~i~~~~d~i~~l~~~~~~~G~i-~~~~~~~~~~ 244 (261)
T PRK14258 207 VSHNLHQVSRLSDFTAFFKGNENRIGQL-VEFGLTKKIF 244 (261)
T ss_pred EECCHHHHHHhcCEEEEEccCCCcCceE-EEeCCHHHHH
Confidence 99999999999999999999 886 4557666543
No 248
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=338.68 Aligned_cols=374 Identities=26% Similarity=0.356 Sum_probs=235.7
Q ss_pred eEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc-HH
Q 008750 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT-VR 179 (555)
Q Consensus 102 nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t-v~ 179 (555)
++..+|+.. ..|-.+- ..++|.++||+|+||-||||-+|+|+|.+.|.=|.-. +.+.. ++..-.|..| ++
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~pp~w-----deVi~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--DPPSW-----DEVIKRFRGTELQ 150 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--CCCCH-----HHHHHHhhhhHHH
Confidence 467788632 1222221 3568999999999999999999999999999876431 11000 0000011111 11
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH----HHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD----EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
++|...+...... ....+.+..+.. ....+... .+-.-..+++.+.++|. ...+|
T Consensus 151 ~YF~~l~~g~~r~--------------v~K~QYVd~iPk~~KG~v~elLk~------~de~g~~devve~l~L~-nvl~r 209 (591)
T COG1245 151 NYFKKLYEGELRA--------------VHKPQYVDLIPKVVKGKVGELLKK------VDERGKFDEVVERLGLE-NVLDR 209 (591)
T ss_pred HHHHHHHcCCcce--------------ecchHHHHHHHHHhcchHHHHHHh------hhhcCcHHHHHHHhcch-hhhhh
Confidence 1221111111000 000111110000 00001110 01112567788889996 56799
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEec--
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETE-- 330 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~-- 330 (555)
.+++|||||.||++||.++++++|++++|||||.||...+-...+.++ +.+++||+|.||+..++.++|-|.++-
T Consensus 210 ~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~ 289 (591)
T COG1245 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE 289 (591)
T ss_pred hhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC
Confidence 999999999999999999999999999999999999977655554443 338999999999999999999888773
Q ss_pred CCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccc
Q 008750 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQM 410 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 410 (555)
.|..-++.-+|+- ...|+.+-.+. +.++... +...++
T Consensus 290 pg~YGvvs~p~sv--------------------------r~gIN~yL~Gy--------------l~~EN~R---~R~~~I 326 (591)
T COG1245 290 PGVYGVVSKPKSV--------------------------RVGINEYLKGY--------------LPEENVR---FRPEEI 326 (591)
T ss_pred CccceEeccchHH--------------------------HHHHHHHHhcc--------------Cchhccc---ccccce
Confidence 3321112222211 11111111110 0011100 111223
Q ss_pred eeeccCCC-CCC-CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 411 KIRFPERG-RSG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 411 ~~~~~~~~-~~~-~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
.|...++. ... +.+++..++++.|++- -|.--.=+|+.||+|+++||||.||||++++|+|.++|++|. ..++
T Consensus 327 ~F~~~~~~~~~~~~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~ 401 (591)
T COG1245 327 EFEEKPPRDDKARDTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL 401 (591)
T ss_pred eeeccCcccccccceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc
Confidence 34333222 223 6788889999998852 344344578889999999999999999999999999999997 3467
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhccc-CcHH-HHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WRID-DIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~-~~~~-~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++.|-||-.. -+.+-||.+.+...... +... --.+++..+.+. +.+++++..|||||.|||++|
T Consensus 402 ~vSyKPQyI~--~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQRvaIa 467 (591)
T COG1245 402 KVSYKPQYIS--PDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQRVAIA 467 (591)
T ss_pred eEeecceeec--CCCCCcHHHHHHHhhhhhcccchhHHhhcCccchH-HHHhcccccCCchhHHHHHHH
Confidence 8889998753 44677999999877553 2222 234567778884 689999999999999999986
No 249
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-41 Score=353.00 Aligned_cols=245 Identities=25% Similarity=0.373 Sum_probs=181.2
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc--eeeeeeeEEEECCCEEEEEcCCCc
Q 008750 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGA 134 (555)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGs 134 (555)
.+......+..|+-+.+.++++.... +.+ .+.... .++++||+|+|++. ++|+|+||++++||++||+|++||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~---~~~~~~-~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGs 375 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFP-DEQ---TATTGQ-ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGS 375 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCC-ccc---cCCccc-eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCC
Confidence 44555556666666666555433221 110 111112 69999999999765 599999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHH--HHHHHHHHHHHHHH
Q 008750 135 GKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLERVQKA 202 (555)
Q Consensus 135 GKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~--~~~~~~~~~~~~~~ 202 (555)
|||||+++|+|.++|++|+|.++|.+. .|++++|.+.+ |..|+++|+..+-.+ ..+.. +.
T Consensus 376 GKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl-F~~Tlr~NL~lA~~~AsDEel~-------~a 447 (573)
T COG4987 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANPDASDEELW-------AA 447 (573)
T ss_pred CHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH-HHHHHHHHHhhcCCCCCHHHHH-------HH
Confidence 999999999999999999999998542 58999999888 788999999754321 11111 11
Q ss_pred HhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 008750 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282 (555)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLl 282 (555)
++... +.. + ....++..+..+++ .-..|||||+||++|||+|+++.+++|
T Consensus 448 L~qvg-----L~~-------l--------~~~~p~gl~t~lge----------~G~~LSGGE~rRLAlAR~LL~dapl~l 497 (573)
T COG4987 448 LQQVG-----LEK-------L--------LESAPDGLNTWLGE----------GGRRLSGGERRRLALARALLHDAPLWL 497 (573)
T ss_pred HHHcC-----HHH-------H--------HHhChhhhhchhcc----------CCCcCCchHHHHHHHHHHHHcCCCeEE
Confidence 11000 000 0 00011122222222 235799999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 283 LDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 283 LDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
|||||.|||+.+.+.+.+.+.+ .|+|+|+|||++..++ .||||++|++|++ +.+|+|.+...
T Consensus 498 LDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gki-ie~G~~~~Ll~ 561 (573)
T COG4987 498 LDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKI-IEEGTHAELLA 561 (573)
T ss_pred ecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCee-eecCCHHhhhc
Confidence 9999999999999999998754 5999999999999997 4999999999997 56899988765
No 250
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-40 Score=378.95 Aligned_cols=257 Identities=21% Similarity=0.331 Sum_probs=186.3
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
.+......+.+.+.+..+.+++++..+.+...... .... .....+.|+++||+|+|++ +++|+|+||+|++||
T Consensus 433 ~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~---~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge 508 (711)
T TIGR00958 433 AVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT-GTLA---PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE 508 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCC---CCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCC
Confidence 44455555566777888888877664333211110 0000 0122346999999999964 469999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
+++|||+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ |+.|++||+..+.....
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-F~gTIreNI~~g~~~~~---- 583 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVL-FSGSVRENIAYGLTDTP---- 583 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccc-cccCHHHHHhcCCCCCC----
Confidence 9999999999999999999999999999999998653 59999999987 67899999975421000
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
.+++.+.++ .. .+...+.++-+ |++... .....+||||||||++|||||
T Consensus 584 -~e~i~~al~------------------------~a---~l~~~i~~lp~--GldT~i-ge~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 584 -DEEIMAAAK------------------------AA---NAHDFIMEFPN--GYDTEV-GEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred -HHHHHHHHH------------------------Hc---CCHHHHHhCCC--ccCCcc-cCCCCcCCHHHHHHHHHHHHH
Confidence 000001111 00 11111111111 343222 223458999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+++|+|||||||||+||+++.+.+.+.....++|+|+|||+++.+. .||+|++|++|++ ...|++++.++
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~i-ve~Gt~~eL~~ 702 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSV-VEMGTHKQLME 702 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEE-EEeeCHHHHHh
Confidence 9999999999999999999999998844446899999999999986 5999999999987 45688877654
No 251
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=335.99 Aligned_cols=210 Identities=19% Similarity=0.252 Sum_probs=167.3
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~-------- 160 (555)
.+++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 34579999999999888899999999999999999999999999999999999863 68999998743
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..|+|++|++.++. .|+.+|+...... .. . ....+
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~---------------~~-~------------------------~~~~~ 135 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFP-KSIYENIAFAPRA---------------NG-Y------------------------KGNLD 135 (274)
T ss_pred HHHhhcEEEEccCCcccc-ccHHHHHHhHHHh---------------cC-c------------------------hHHHH
Confidence 25899999987754 5999988532100 00 0 00001
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
..+..+++.+++. ....++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|.+ .+.|||+
T Consensus 136 ~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii 215 (274)
T PRK14265 136 ELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIM 215 (274)
T ss_pred HHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 1223334444442 1245678899999999999999999999999999999999999999999998864 3689999
Q ss_pred EecCHHHHHhhcceeEEec---------CCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~---------~G~~~~~~G~y~~~~ 345 (555)
||||++++..+||++++|+ +|++ +..|...++.
T Consensus 216 ~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~-~~~g~~~~~~ 257 (274)
T PRK14265 216 VTHNMQQASRVADWTAFFNTEIDEYGKRRGKL-VEFSPTEQMF 257 (274)
T ss_pred EeCCHHHHHHhCCEEEEEecccccccccCceE-EEeCCHHHHH
Confidence 9999999999999999997 7876 4557665543
No 252
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-41 Score=315.84 Aligned_cols=160 Identities=36% Similarity=0.579 Sum_probs=146.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~Q 168 (555)
|+++|++++|++.++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 478999999988889999999999999999999999999999999999999999999998753 25899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+
T Consensus 81 ~~~~~~~~tv~~~~------------------------------------------------------------------ 94 (173)
T cd03230 81 EPSLYENLTVRENL------------------------------------------------------------------ 94 (173)
T ss_pred CCccccCCcHHHHh------------------------------------------------------------------
Confidence 98877777886653
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcce
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dr 325 (555)
.|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|+|++|||++++..+||+
T Consensus 95 ----------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 95 ----------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred ----------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 0999999999999999999999999999999999999999988753 478999999999999999999
Q ss_pred eEEecCCe
Q 008750 326 IVETEMGV 333 (555)
Q Consensus 326 i~~l~~G~ 333 (555)
+++|++|+
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 99999885
No 253
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-41 Score=330.07 Aligned_cols=209 Identities=26% Similarity=0.396 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
.|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3899999999975 579999999999999999999999999999999999999999999998743 24999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++. .|+.+|+........ ...+...++ ...+..+++.
T Consensus 82 ~~q~~~~~~-~tv~~~~~~~~~~~~-----~~~~~~~~~-------------------------------~~~l~~~~~~ 124 (229)
T cd03254 82 VLQDTFLFS-GTIMENIRLGRPNAT-----DEEVIEAAK-------------------------------EAGAHDFIMK 124 (229)
T ss_pred ecCCchhhh-hHHHHHHhccCCCCC-----HHHHHHHHH-------------------------------HhChHHHHHh
Confidence 999987654 499998754211000 000000000 0011222333
Q ss_pred c--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ |+.. ..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+|||+++++.
T Consensus 125 ~~~~~~~-~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~- 202 (229)
T cd03254 125 LPNGYDT-VLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK- 202 (229)
T ss_pred CcccccC-HhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-
Confidence 3 4432 34667889999999999999999999999999999999999999999888754 4789999999999996
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++. +.|+++++.
T Consensus 203 ~~d~i~~l~~g~~~-~~~~~~~~~ 225 (229)
T cd03254 203 NADKILVLDDGKII-EEGTHDELL 225 (229)
T ss_pred hCCEEEEEeCCeEE-EeCCHHHHH
Confidence 59999999999974 567766554
No 254
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-41 Score=337.51 Aligned_cols=210 Identities=22% Similarity=0.353 Sum_probs=168.3
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------ceEEEEec
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------~~ig~v~Q 168 (555)
.|+++||+++|+ ++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 489999999995 5789999999999999999999999999999999999999999999999853 25999999
Q ss_pred ccccC--cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 169 EFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 169 ~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
++.+. +..++.+++........ .. . .........++.++++.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~--------------~~------~---------------~~~~~~~~~~~~~~l~~~ 130 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHM--------------GW------L---------------RRAKKRDRQIVTAALARV 130 (272)
T ss_pred ccccccCCCcchhhheeccccccc--------------cc------c---------------cCCCHHHHHHHHHHHHHc
Confidence 97653 23456666532100000 00 0 000011234566778889
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||++++..+|
T Consensus 131 gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~ 209 (272)
T PRK15056 131 DMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209 (272)
T ss_pred CCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 986 456889999999999999999999999999999999999999999999988753 4889999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|+++++ +|++. +.|..++.
T Consensus 210 d~v~~~-~G~i~-~~g~~~~~ 228 (272)
T PRK15056 210 DYTVMV-KGTVL-ASGPTETT 228 (272)
T ss_pred CEEEEE-CCEEE-eecCHHhc
Confidence 999887 78863 55665543
No 255
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.6e-40 Score=369.40 Aligned_cols=254 Identities=26% Similarity=0.405 Sum_probs=193.5
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-CceeeeeeeEEEECCCE
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~ 125 (555)
..+......+...+.+..+.+++++..++++........ .......|+++||+|+|+ ++++|+|+||+|++||+
T Consensus 283 ~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-----~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~ 357 (567)
T COG1132 283 TPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP-----LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEK 357 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC-----CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCE
Confidence 345555555666778888888888877664321111110 112334599999999998 57899999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHH----HHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EME 191 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~----~~~ 191 (555)
+||||+||||||||+++|+|+++|++|+|.+||.+. .|+||+|++.+ |+.||++|+..+..+ ++.
T Consensus 358 vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L-F~~TI~~NI~~g~~~at~eei~ 436 (567)
T COG1132 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL-FSGTIRENIALGRPDATDEEIE 436 (567)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee-ecccHHHHHhcCCCCCCHHHHH
Confidence 999999999999999999999999999999988653 59999999988 569999999765321 111
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHH
Q 008750 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (555)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lA 271 (555)
.+.+.. .+...+..+.+ |++.... .....||||||||++||
T Consensus 437 ~a~k~a------------------------------------~~~d~I~~lp~--g~dt~vg-e~G~~LSgGQrQrlaiA 477 (567)
T COG1132 437 EALKLA------------------------------------NAHEFIANLPD--GYDTIVG-ERGVNLSGGQRQRLAIA 477 (567)
T ss_pred HHHHHh------------------------------------ChHHHHHhCcc--cccceec-CCCccCCHHHHHHHHHH
Confidence 111100 11112222211 4443332 23358999999999999
Q ss_pred HHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||+.+|++||||||||+||..++..+.+.+.+ .++|+|+|+|+++.+.. ||+|++|++|++ ...|++++.+..
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i-~e~G~h~eLl~~ 553 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRI-VERGTHEELLAK 553 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEE-EEecCHHHHHHc
Confidence 999999999999999999999999999988752 56799999999999987 999999999995 667898887764
No 256
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.4e-40 Score=378.76 Aligned_cols=259 Identities=22% Similarity=0.337 Sum_probs=184.2
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-CceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~ 126 (555)
++......+.+.+.+..+++++.+....+.+......... .....+.|+++||+|+|+ ++++|+|+||+|++|+++
T Consensus 427 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~---~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~v 503 (708)
T TIGR01193 427 PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTE---LNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKT 503 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccC---CCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEE
Confidence 4444444455566666666665544322211110000000 112234599999999996 467999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
||||+||||||||+++|+|+++|++|+|.++|.+. .||||+|++.+ |+.|++||+..+...... .
T Consensus 504 aIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~l~~~~~~~----~ 578 (708)
T TIGR01193 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI-FSGSILENLLLGAKENVS----Q 578 (708)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee-hhHHHHHHHhccCCCCCC----H
Confidence 99999999999999999999999999999998653 69999999987 678999999753100000 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+++.+.+.. ..+.+.+..+- .|++... ......||||||||++|||||+.
T Consensus 579 ~~i~~a~~~---------------------------a~l~~~i~~lp--~gldt~i-~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 579 DEIWAACEI---------------------------AEIKDDIENMP--LGYQTEL-SEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred HHHHHHHHH---------------------------hCCHHHHHhcc--cccCcEe-cCCCCCCCHHHHHHHHHHHHHhh
Confidence 000000100 01111122111 1333222 22346899999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC-CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~-~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|++|||||||++||+.+++.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++ ...|++++.+.
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i-~~~G~~~~L~~ 697 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKI-IEQGSHDELLD 697 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEE-EEECCHHHHHh
Confidence 9999999999999999999999988865 4789999999999985 6999999999997 46788877654
No 257
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-41 Score=330.20 Aligned_cols=208 Identities=27% Similarity=0.437 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCCc--eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++|++++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999765 79999999999999999999999999999999999999999999998843 24999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++ ..|+.||+....... . . ..+.... ....+.++++.
T Consensus 81 ~~q~~~~~-~~tv~enl~~~~~~~-~-~---~~~~~~~-------------------------------~~~~~~~~~~~ 123 (234)
T cd03251 81 VSQDVFLF-NDTVAENIAYGRPGA-T-R---EEVEEAA-------------------------------RAANAHEFIME 123 (234)
T ss_pred eCCCCeec-cccHHHHhhccCCCC-C-H---HHHHHHH-------------------------------HHcCcHHHHHh
Confidence 99998775 479999985431100 0 0 0000000 00012333444
Q ss_pred c--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ |+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++|||++++..
T Consensus 124 l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 124 LPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred cccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 4 454 345677899999999999999999999999999999999999999999988854 48899999999999976
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+|++|++|++. ..|+..++.
T Consensus 203 -~d~v~~l~~G~i~-~~~~~~~~~ 224 (234)
T cd03251 203 -ADRIVVLEDGKIV-ERGTHEELL 224 (234)
T ss_pred -CCEEEEecCCeEe-eeCCHHHHH
Confidence 9999999999874 567665543
No 258
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.3e-40 Score=366.16 Aligned_cols=209 Identities=31% Similarity=0.446 Sum_probs=174.8
Q ss_pred CccEEEEeEEEEeC-----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-CC---------
Q 008750 95 SSGVKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-KS--------- 159 (555)
Q Consensus 95 ~~~i~l~nls~~y~-----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-g~--------- 159 (555)
.++|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 45799999999994 2579999999999999999999999999999999999999999999995 42
Q ss_pred -------CceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 160 -------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 160 -------~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
..+|+|++|++.+++..||.+|+...+. + ....
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~---------------~-------------------------~~~~ 396 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG---------------L-------------------------ELPD 396 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH---------------c-------------------------CCCH
Confidence 1248999999888788899999853210 0 0000
Q ss_pred ccHHHHHHHHhhhcCCCc----cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----C
Q 008750 233 DTLDAKVSKLMPELGFTA----DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~----~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~ 304 (555)
.....++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|+ +
T Consensus 397 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 397 ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred HHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 112345677889999964 25689999999999999999999999999999999999999999999998874 3
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.|.|||+||||++++..+||+|++|++|++. +.|...+.
T Consensus 477 ~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 515 (520)
T TIGR03269 477 MEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDPEEI 515 (520)
T ss_pred cCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 5899999999999999999999999999874 45665443
No 259
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=371.55 Aligned_cols=258 Identities=21% Similarity=0.358 Sum_probs=182.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+.+.+.+..+.+++.+....+.+... ..... ......|+++||+|+|++ +++|+|+||+|++|++
T Consensus 297 pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~--~~~~~---~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 371 (582)
T PRK11176 297 PLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE--GKRVI---ERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKT 371 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC--CCcCC---CCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCE
Confidence 3344444445566666666665554332211110 00000 012235999999999964 5799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.+ |+.|+++|+..+..+...
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~~~---- 446 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL-FNDTIANNIAYARTEQYS---- 446 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee-ecchHHHHHhcCCCCCCC----
Confidence 999999999999999999999999999999998652 59999999887 678999999753110000
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
-+++...++. ..+.+.+..+- -|++....+ .-.+||||||||++|||||+
T Consensus 447 ~~~i~~al~~---------------------------~~l~~~i~~lp--~Gldt~ig~-~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 447 REQIEEAARM---------------------------AYAMDFINKMD--NGLDTVIGE-NGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred HHHHHHHHHH---------------------------hCcHHHHHhcc--cccCceeCC-CCCcCCHHHHHHHHHHHHHH
Confidence 0000000000 01111122211 134332222 23579999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
.+|++||||||||+||+.+...+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++. ..|++++..+.
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~-e~g~~~~l~~~ 568 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIV-ERGTHAELLAQ 568 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EeCCHHHHHhC
Confidence 99999999999999999999999988864 4799999999999986 59999999999874 56888777654
No 260
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.3e-40 Score=330.04 Aligned_cols=208 Identities=25% Similarity=0.423 Sum_probs=163.8
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 579999999999999999999999999999999999999999999999853 24999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++ ..||.+|+...... .. ...+...+ . ...+.+++..
T Consensus 81 ~~q~~~~~-~~tv~~nl~~~~~~-~~----~~~~~~~~------------------------~-------~~~~~~~l~~ 123 (237)
T cd03252 81 VLQENVLF-NRSIRDNIALADPG-MS----MERVIEAA------------------------K-------LAGAHDFISE 123 (237)
T ss_pred EcCCchhc-cchHHHHhhccCCC-CC----HHHHHHHH------------------------H-------HcCcHHHHHh
Confidence 99998764 57999998542110 00 00000000 0 0012233444
Q ss_pred c--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ ++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||++|||++++.
T Consensus 124 l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~- 201 (237)
T cd03252 124 LPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK- 201 (237)
T ss_pred Cccccc-chhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-
Confidence 4 443 235678899999999999999999999999999999999999999999988753 4789999999999996
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++. +.|+..++.
T Consensus 202 ~~d~v~~l~~G~i~-~~~~~~~~~ 224 (237)
T cd03252 202 NADRIIVMEKGRIV-EQGSHDELL 224 (237)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 59999999999874 557666554
No 261
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-40 Score=345.23 Aligned_cols=253 Identities=24% Similarity=0.353 Sum_probs=185.8
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCce-eeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT-VLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~~-vL~~vsl~i~~Ge~~ 126 (555)
++...-..+....++..+..+++.........+.. .++. ......|+++||+|+|+.++ +|++|||+|++||++
T Consensus 307 ~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i---~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekV 381 (591)
T KOG0057|consen 307 PLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPI---ELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKV 381 (591)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCc---ccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEE
Confidence 33344445566777777777777664433222221 0111 12334599999999998665 999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
||||+|||||||++|+|.+++. ++|+|.++|.++ .||||||+..+ |+.||..|+..+-... ..
T Consensus 382 aIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~L-FndTIl~NI~YGn~sa-----s~ 454 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVL-FNDTILYNIKYGNPSA-----SD 454 (591)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccc-cchhHHHHhhcCCCCc-----CH
Confidence 9999999999999999999999 999999999764 49999999877 8899999997542110 00
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
+++.+.+ ...+ +.+....+ |......+| ...|||||||||+||||+
T Consensus 455 eeV~e~~------------------------k~a~-------~hd~i~~l~~GY~T~VGer-G~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 455 EEVVEAC------------------------KRAG-------LHDVISRLPDGYQTLVGER-GLMLSGGEKQRVSLARAF 502 (591)
T ss_pred HHHHHHH------------------------HHcC-------cHHHHHhccccchhhHhhc-ccccccchHHHHHHHHHH
Confidence 0000111 1111 11111222 222212222 247999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+.+|+|++||||||+||.+++..+.+++.+ .++|+|+|-||+..+.+ ||+|+++++|++.. .|+.++++.
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e-~gth~ell~ 574 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKE-YGTHSELLA 574 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEE-eccHHHHhh
Confidence 999999999999999999999999998865 58999999999999986 99999999999755 477777665
No 262
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2e-40 Score=376.66 Aligned_cols=258 Identities=24% Similarity=0.375 Sum_probs=184.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
++.....-+.+++.+..+++++.+....+.+....... .......+.|+++||+|+|++ +++|+|+||+|++||+
T Consensus 417 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~---~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~ 493 (694)
T TIGR03375 417 PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRF---LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEK 493 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC---CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCE
Confidence 44445555556666666666665544332211110000 000122345999999999964 4699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ |+.|++||+...-.+ ..
T Consensus 494 iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l-f~~TI~eNi~~~~~~-~~---- 567 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL-FYGTLRDNIALGAPY-AD---- 567 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh-hhhhHHHHHhCCCCC-CC----
Confidence 999999999999999999999999999999998642 69999999987 678999999643110 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+++.+.+. ...+...+..+. .|++.... .....||||||||++|||||+
T Consensus 568 ~~~i~~a~~---------------------------~~~l~~~i~~lp--~gl~T~i~-e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 568 DEEILRAAE---------------------------LAGVTEFVRRHP--DGLDMQIG-ERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred HHHHHHHHH---------------------------HcChHHHHHhCc--ccccceec-CCCCCCCHHHHHHHHHHHHHh
Confidence 000001110 001111122211 14433322 234589999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++||||||||+||+.+++.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|+++ ..|+++++..
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~-e~G~~~eLl~ 688 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIV-ADGPKDQVLE 688 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEE-eeCCHHHHHH
Confidence 99999999999999999999999998864 4799999999999985 69999999999974 5688776653
No 263
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.2e-40 Score=368.16 Aligned_cols=250 Identities=25% Similarity=0.370 Sum_probs=180.2
Q ss_pred hHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCC
Q 008750 55 EKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVN 132 (555)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~N 132 (555)
.+...+.+..+.+++.+....+++........ .....+.|+++||+|+|++ +++|+|+||+|++|+++||||+|
T Consensus 300 ~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~----~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~s 375 (574)
T PRK11160 300 AFQHLGQVIASARRINEITEQKPEVTFPTTST----AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRT 375 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCcccC----CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCC
Confidence 34455666666666665543322111000000 0112346999999999964 46999999999999999999999
Q ss_pred CccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHH
Q 008750 133 GAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202 (555)
Q Consensus 133 GsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~ 202 (555)
|||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ |+.|++||+..+..+. ..+++...
T Consensus 376 GsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~ti~~Ni~~~~~~~-----~~~~i~~a 449 (574)
T PRK11160 376 GCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSATLRDNLLLAAPNA-----SDEALIEV 449 (574)
T ss_pred CCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchh-hcccHHHHhhcCCCcc-----CHHHHHHH
Confidence 99999999999999999999999998653 49999999987 5689999986432100 00000001
Q ss_pred HhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 008750 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282 (555)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLl 282 (555)
++ .. .+...+.. .-|++... ......||||||||++|||||+.+|++||
T Consensus 450 l~------------------------~~---~l~~~i~~---p~GldT~v-ge~g~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 450 LQ------------------------QV---GLEKLLED---DKGLNAWL-GEGGRQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred HH------------------------Hc---CCHHHHcC---ccccCchh-cCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 10 00 01111111 11333222 22356899999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 283 LDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 283 LDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||||++||+.+++.+.+.|.+ .++|+|+|||+++.+.. ||+|++|++|++. ..|++++.+..
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 563 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQII-EQGTHQELLAQ 563 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEE-EeCCHHHHHhc
Confidence 9999999999999999998864 48999999999999965 9999999999974 56888776543
No 264
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.1e-41 Score=329.98 Aligned_cols=189 Identities=29% Similarity=0.405 Sum_probs=158.3
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----eEEEEecccccCcCccHHHHHHHhhH
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFK 187 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----~ig~v~Q~~~~~~~~tv~e~~~~~~~ 187 (555)
|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. ..+|++|++.+++..||.+|+.....
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999987542 35899999988788899999854210
Q ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHH
Q 008750 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (555)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (555)
.. .. .........++.++++.+|+. ...++++.+||||||||
T Consensus 81 ~~-------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qr 122 (230)
T TIGR01184 81 RV-------------LP------------------------DLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQR 122 (230)
T ss_pred hc-------------cc------------------------CCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHH
Confidence 00 00 001112234567788899996 46688899999999999
Q ss_pred HHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCC
Q 008750 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (555)
Q Consensus 268 v~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~ 340 (555)
++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+||||++++..+||+|++|++|++. ..|+
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~ 198 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA-NIGQ 198 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe-cccC
Confidence 9999999999999999999999999999999988753 4889999999999999999999999999875 3443
No 265
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=315.40 Aligned_cols=162 Identities=39% Similarity=0.585 Sum_probs=146.2
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------ceEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------~~ig~ 165 (555)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 478999999988889999999999999999999999999999999999999999999998742 25899
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..|+.+|+.
T Consensus 81 ~~q~~~~~~~~t~~~~l~-------------------------------------------------------------- 98 (178)
T cd03229 81 VFQDFALFPHLTVLENIA-------------------------------------------------------------- 98 (178)
T ss_pred EecCCccCCCCCHHHhee--------------------------------------------------------------
Confidence 999988777778877641
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHHHHh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~l~~ 321 (555)
+ .|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ . +.|+|+||||++++..
T Consensus 99 --~----------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 99 --L----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred --e----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 0 0999999999999999999999999999999999999999988753 3 7899999999999999
Q ss_pred hcceeEEecCCe
Q 008750 322 LCTKIVETEMGV 333 (555)
Q Consensus 322 ~~dri~~l~~G~ 333 (555)
+||+|++|++|+
T Consensus 167 ~~d~i~~l~~g~ 178 (178)
T cd03229 167 LADRVVVLRDGK 178 (178)
T ss_pred hcCEEEEEeCCC
Confidence 999999998873
No 266
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=331.68 Aligned_cols=210 Identities=22% Similarity=0.335 Sum_probs=168.1
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~--------- 160 (555)
.+.|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 4569999999999888899999999999999999999999999999999999875 79999997632
Q ss_pred -----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 161 -----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
..++|++|++.+++. |+.+|+...... .. .. .....
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~---------------~~-~~----------------------~~~~~ 134 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRI---------------RG-VK----------------------RRSIL 134 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHH---------------cC-CC----------------------hHHHH
Confidence 248999999887664 999998532110 00 00 00011
Q ss_pred HHHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEE
Q 008750 236 DAKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (555)
Q Consensus 236 ~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvI 310 (555)
++++..+++.+++. ....++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tii 214 (265)
T PRK14252 135 EERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTIL 214 (265)
T ss_pred HHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEE
Confidence 23344445555542 1244677899999999999999999999999999999999999999999988753 368999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+||||++++..+||+|++|++|++.. .|+..++
T Consensus 215 ivth~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 247 (265)
T PRK14252 215 IVTHNMQQAARVSDYTAYMYMGELIE-FGATDTI 247 (265)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999854 4555443
No 267
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-40 Score=322.96 Aligned_cols=189 Identities=21% Similarity=0.318 Sum_probs=162.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEEEEecc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQE 169 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig~v~Q~ 169 (555)
+|+++||++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 58999999999888899999999999999999999999999999999999999999999988542 48999998
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+..... . .+ ..+.++.++++.+|+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~---------------~--------------------------~~--~~~~~~~~~l~~~~l~ 118 (207)
T PRK13539 82 NAMKPALTVAENLEFWAA---------------F--------------------------LG--GEELDIAAALEAVGLA 118 (207)
T ss_pred CcCCCCCcHHHHHHHHHH---------------h--------------------------cC--CcHHHHHHHHHHcCCH
Confidence 877778899998742110 0 00 0123467788889986
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
. ..++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|+||||++++.. |++
T Consensus 119 ~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 119 P-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred H-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcE
Confidence 4 56888999999999999999999999999999999999999999999888753 48999999999999986 999
Q ss_pred EEecC
Q 008750 327 VETEM 331 (555)
Q Consensus 327 ~~l~~ 331 (555)
+.++.
T Consensus 196 ~~~~~ 200 (207)
T PRK13539 196 LDLGP 200 (207)
T ss_pred EeecC
Confidence 88754
No 268
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.3e-40 Score=327.20 Aligned_cols=196 Identities=29% Similarity=0.388 Sum_probs=162.2
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
+.++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++.+...+++..|
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~--~~~~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS--SLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc--hhhcccccCCCCCc
Confidence 7889999999999999999999999999999999999999999999999999999999997542 22222344556789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
|.+|+...... . .........++.++++.+|+. ...++++
T Consensus 101 v~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 140 (224)
T cd03220 101 GRENIYLNGRL---------------L------------------------GLSRKEIDEKIDEIIEFSELG-DFIDLPV 140 (224)
T ss_pred HHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-hhhhCCh
Confidence 99987532100 0 000111233566777888885 4568889
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+||||++++..+||+|++|++|++
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999888887643 478999999999999999999999999986
Q ss_pred e
Q 008750 335 R 335 (555)
Q Consensus 335 ~ 335 (555)
.
T Consensus 221 ~ 221 (224)
T cd03220 221 R 221 (224)
T ss_pred E
Confidence 4
No 269
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-40 Score=340.21 Aligned_cols=212 Identities=21% Similarity=0.322 Sum_probs=169.3
Q ss_pred CCccEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-----
Q 008750 94 ISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM----- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~----- 161 (555)
....|+++|++++|. ..++|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 446799999999995 3579999999999999999999999999999999999986 5799999988642
Q ss_pred -------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 162 -------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 162 -------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
.++|+||++.++ ..|+++|+...... .. ..+ ...
T Consensus 157 ~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~---------------~~-~~~----------------------~~~ 197 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRN---------------NG-IND----------------------RKI 197 (329)
T ss_pred chHhhhccEEEEecCCccC-CCcHHHHHHhHHHh---------------cC-CCh----------------------HHH
Confidence 599999998874 68999998632100 00 000 000
Q ss_pred HHHHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceE
Q 008750 235 LDAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM 309 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tv 309 (555)
.++.+..+++.+++.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .+.|+
T Consensus 198 ~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Ti 277 (329)
T PRK14257 198 LEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSI 277 (329)
T ss_pred HHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEE
Confidence 1222344455555421 234677889999999999999999999999999999999999999999888753 36899
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|||+++++.++||||++|++|++. ..|.+.+..
T Consensus 278 i~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l~ 312 (329)
T PRK14257 278 IIVTHSMAQAQRISDETVFFYQGWIE-EAGETKTIF 312 (329)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999975 457766643
No 270
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.9e-40 Score=326.45 Aligned_cols=201 Identities=22% Similarity=0.433 Sum_probs=162.0
Q ss_pred CCccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------
Q 008750 94 ISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------- 160 (555)
..++|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 3466999999999974 369999999999999999999999999999999999999999999999854
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..++|++|++.++ ..||.+|+....... .. .+ +... .....+.
T Consensus 88 ~~i~~~~q~~~l~-~~tv~~nl~~~~~~~-------------------~~-------~~---~~~~-------~~~~~~~ 130 (226)
T cd03248 88 SKVSLVGQEPVLF-ARSLQDNIAYGLQSC-------------------SF-------EC---VKEA-------AQKAHAH 130 (226)
T ss_pred hhEEEEecccHHH-hhhHHHHhccccCCC-------------------CH-------HH---HHHH-------HHHcCcH
Confidence 2599999998764 469999875322100 00 00 0000 0011234
Q ss_pred HHhhhc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCH
Q 008750 241 KLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~ 316 (555)
++++.+ |+.. ..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|+||||+
T Consensus 131 ~~l~~l~~gl~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 209 (226)
T cd03248 131 SFISELASGYDT-EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRL 209 (226)
T ss_pred HHHHhccccccc-hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 456666 6653 45778999999999999999999999999999999999999999999988753 368999999999
Q ss_pred HHHHhhcceeEEecCCe
Q 008750 317 AFLDQLCTKIVETEMGV 333 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~ 333 (555)
+++.. ||+|++|++|+
T Consensus 210 ~~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 210 STVER-ADQILVLDGGR 225 (226)
T ss_pred HHHHh-CCEEEEecCCc
Confidence 99964 99999999885
No 271
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.4e-40 Score=310.22 Aligned_cols=163 Identities=26% Similarity=0.443 Sum_probs=147.0
Q ss_pred EEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 98 i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
|+++|++++|+ ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++.+ +..
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~~~~-~~~ 78 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQRPYL-PLG 78 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCCCcc-ccc
Confidence 47899999996 467999999999999999999999999999999999999999999999864 579999999875 467
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
|+.+|+.. + .
T Consensus 79 tv~~nl~~--------------------------------------------------------------~--------~ 88 (166)
T cd03223 79 TLREQLIY--------------------------------------------------------------P--------W 88 (166)
T ss_pred cHHHHhhc--------------------------------------------------------------c--------C
Confidence 88887621 0 2
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
+.+||||||||++|||||+.+|++|||||||++||+.+.+++.+.+++.+.|+|++|||++++ .+||+|++|+++.
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 468999999999999999999999999999999999999999999988889999999999876 5899999998764
No 272
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.2e-40 Score=367.46 Aligned_cols=258 Identities=21% Similarity=0.342 Sum_probs=182.3
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~ 126 (555)
++......+...+.+...++++.+....+.+......... .....+.|+++||+|+|++ .++|+|+||+|++|+++
T Consensus 288 ~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~---~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v 364 (588)
T PRK13657 288 RLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAID---LGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTV 364 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCC---cCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEE
Confidence 3334444445566666777766665433211100000000 0112345999999999975 57999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
+|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+||++.+ |+.|++||+..+-.+. . -
T Consensus 365 ~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~-~----d 438 (588)
T PRK13657 365 AIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL-FNRSIEDNIRVGRPDA-T----D 438 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc-ccccHHHHHhcCCCCC-C----H
Confidence 9999999999999999999999999999999854 269999999987 6789999997531100 0 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+++...+.. ..+...+..+- .|++... ......||||||||++|||||+.
T Consensus 439 ~~i~~al~~---------------------------~~l~~~i~~lp--~gldt~i-~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 439 EEMRAAAER---------------------------AQAHDFIERKP--DGYDTVV-GERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred HHHHHHHHH---------------------------hCHHHHHHhCc--ccccchh-cCCCCCCCHHHHHHHHHHHHHhc
Confidence 000000000 01111111111 1333222 22345799999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|++|||||||++||+.+.+.+.+.|.+ .++|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~-~~g~~~~l~~ 558 (588)
T PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVV-ESGSFDELVA 558 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEE-EeCCHHHHHH
Confidence 9999999999999999999999988764 4799999999999985 59999999999975 4677776654
No 273
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-40 Score=320.78 Aligned_cols=185 Identities=21% Similarity=0.331 Sum_probs=159.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
+|+++||+++|++.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 37899999999888899999999999999999999999999999999999999999999998542 589999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..||.+|+..... .. ..+.++.++++.++
T Consensus 81 q~~~~~~~~tv~~~~~~~~~------------------------------------------~~--~~~~~~~~~l~~~~ 116 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIH------------------------------------------FS--PGAVGITELCRLFS 116 (200)
T ss_pred cccccCcCCCHHHHHHHHHh------------------------------------------cC--cchHHHHHHHHHcC
Confidence 99888788999998753210 00 01234667788888
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|+|||+.+++.. ||
T Consensus 117 l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d 194 (200)
T PRK13540 117 LE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-AD 194 (200)
T ss_pred Cc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cc
Confidence 86 355788899999999999999999999999999999999999999999998863 58899999999999975 88
Q ss_pred eeE
Q 008750 325 KIV 327 (555)
Q Consensus 325 ri~ 327 (555)
.-+
T Consensus 195 ~~~ 197 (200)
T PRK13540 195 YEE 197 (200)
T ss_pred hhh
Confidence 654
No 274
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-40 Score=336.63 Aligned_cols=224 Identities=20% Similarity=0.300 Sum_probs=174.0
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC-------
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~------- 160 (555)
..+++|.++||+++|+++++|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 34567999999999988889999999999999999999999999999999999986 689999998742
Q ss_pred -----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 008750 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LDT 234 (555)
Q Consensus 161 -----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (555)
..++|++|++.++. .||.+|+......... ... ...... .... ...
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~-----------~~~-----~~~~~~-----------~~~~~~~~ 172 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGD-----------INT-----GLLARL-----------LGRDDKDA 172 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhccc-----------ccc-----cccccc-----------cccCchHH
Confidence 25899999987654 5999998643210000 000 000000 0000 011
Q ss_pred HHHHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceE
Q 008750 235 LDAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPM 309 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tv 309 (555)
....+.++++.+++.. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|++. +.||
T Consensus 173 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~ti 252 (305)
T PRK14264 173 EDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTV 252 (305)
T ss_pred HHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEE
Confidence 2345677777787742 3457888999999999999999999999999999999999999999999988642 5899
Q ss_pred EEEecCHHHHHhhccee-EEecCCeEeeccCChHHHH
Q 008750 310 VIISHDRAFLDQLCTKI-VETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri-~~l~~G~~~~~~G~y~~~~ 345 (555)
||||||++++..+||++ ++|++|++. ..|+.+++.
T Consensus 253 iivtH~~~~i~~~~d~i~~~l~~G~i~-~~g~~~~~~ 288 (305)
T PRK14264 253 VVVTHNMQQAARISDQTAVFLTGGELV-EYDDTDKIF 288 (305)
T ss_pred EEEEcCHHHHHHhcCEEEEEecCCEEE-EeCCHHHHH
Confidence 99999999999999997 577999874 457766543
No 275
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-40 Score=327.96 Aligned_cols=209 Identities=19% Similarity=0.330 Sum_probs=170.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~---------- 161 (555)
.|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+.. |++|+|.++|.+.
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4899999999988889999999999999999999999999999999999864 4899999988432
Q ss_pred --eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 --~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.++|++|++.++. .|+.+|+...+... . .......+.++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14266 83 RKKVGMVFQKPNPFP-KSIFDNVAYGLRIH---------------G-----------------------EDDEDFIEERV 123 (250)
T ss_pred hhheEEEecCCccCc-chHHHHHHhHHhhc---------------C-----------------------CCCHHHHHHHH
Confidence 4999999987765 59999885331100 0 00001123445
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
.++++.+|+.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh 203 (250)
T PRK14266 124 EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56666666632 234778899999999999999999999999999999999999999999988753 4789999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|++++..+||+|++|++|++. +.|+.+++.
T Consensus 204 ~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14266 204 NMQQATRVSKYTSFFLNGEII-ESGLTDQIF 233 (250)
T ss_pred CHHHHHhhcCEEEEEECCeEE-EeCCHHHHH
Confidence 999999999999999999874 567766553
No 276
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.6e-40 Score=320.35 Aligned_cols=185 Identities=25% Similarity=0.364 Sum_probs=157.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~Q 168 (555)
|+++|+++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 478999999998899999999999999999999999999999999999999999999998854 35899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+..... . .. .. +..+.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~--------------------------~~-~~-~~~~~~~l~~~~l 117 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAA---------------I--------------------------HG-GA-QRTIEDALAAVGL 117 (198)
T ss_pred CcccccCCcHHHHHHHHHH---------------H--------------------------cC-Cc-HHHHHHHHHHcCC
Confidence 9888777899998743110 0 00 01 2346677888888
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcce
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dr 325 (555)
. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.+ .|.|+|+||||...+ .|++
T Consensus 118 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~ 194 (198)
T TIGR01189 118 T-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEAR 194 (198)
T ss_pred H-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceE
Confidence 6 456888999999999999999999999999999999999999999999988753 488999999998666 4687
Q ss_pred eEE
Q 008750 326 IVE 328 (555)
Q Consensus 326 i~~ 328 (555)
++.
T Consensus 195 ~~~ 197 (198)
T TIGR01189 195 ELR 197 (198)
T ss_pred Eee
Confidence 765
No 277
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3e-40 Score=327.59 Aligned_cols=208 Identities=24% Similarity=0.400 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEE
Q 008750 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (555)
Q Consensus 98 i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig 164 (555)
|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 469999999999999999999999999999999999999999999998843 2499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.++ ..||.+|+........ ...+.... ... .+.+++.
T Consensus 81 ~~~q~~~~~-~~tv~e~l~~~~~~~~-----~~~~~~~~---------------------------~~~----~~~~~~~ 123 (238)
T cd03249 81 LVSQEPVLF-DGTIAENIRYGKPDAT-----DEEVEEAA---------------------------KKA----NIHDFIM 123 (238)
T ss_pred EECCchhhh-hhhHHHHhhccCCCCC-----HHHHHHHH---------------------------HHc----ChHHHHH
Confidence 999998765 4699999854211000 00000000 000 0112222
Q ss_pred hc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHH
Q 008750 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~ 320 (555)
.+ |+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||++|||++++.
T Consensus 124 ~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 124 SLPDGYD-TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred hhccccc-eeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 22 332 234677899999999999999999999999999999999999999999998753 5789999999999997
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++ .+.|+..++.
T Consensus 203 -~~d~v~~l~~G~i-~~~~~~~~~~ 225 (238)
T cd03249 203 -NADLIAVLQNGQV-VEQGTHDELM 225 (238)
T ss_pred -hCCEEEEEECCEE-EEeCCHHHHh
Confidence 8999999999987 4556655443
No 278
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3e-40 Score=325.05 Aligned_cols=202 Identities=28% Similarity=0.347 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCCC-------ce
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN-------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~g~~-------~~ 162 (555)
.+.++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 3679999999964 579999999999999999999999999999999999999 999999998853 25
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH-
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK- 241 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (555)
++|++|++.+++..||.+|+....... ... .........++..
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~-------------~~~-----------------------~~~~~~~~~~~~~~ 126 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILR-------------LPR-----------------------KSSDAIRKKRVEDV 126 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhh-------------ccc-----------------------ccchHHHHHHHHHH
Confidence 999999998888889999985321100 000 0000001122334
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCH-H
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDR-A 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~-~ 317 (555)
+++.+++. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+++++ .+.|+|++||++ .
T Consensus 127 ~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~ 205 (226)
T cd03234 127 LLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRS 205 (226)
T ss_pred HHHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Confidence 67778875 455788999999999999999999999999999999999999999999888753 478999999998 6
Q ss_pred HHHhhcceeEEecCCeEe
Q 008750 318 FLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~ 335 (555)
.+..+||+|++|++|++.
T Consensus 206 ~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 206 DLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHhCCEEEEEeCCEEE
Confidence 888999999999999874
No 279
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=324.78 Aligned_cols=180 Identities=26% Similarity=0.442 Sum_probs=157.0
Q ss_pred ccEEEEeEEEEeCC---------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEE
Q 008750 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166 (555)
Q Consensus 96 ~~i~l~nls~~y~~---------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v 166 (555)
++++++|+++.|+- ..+++||||+|++||++||||+||||||||.|+|+|+++|++|+|.++|.+..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~---- 78 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT---- 78 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh----
Confidence 56899999999942 36999999999999999999999999999999999999999999999986521
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
.++ ..+..+++.++|+.+
T Consensus 79 --------~~~------------------------------------------------------~~~~~~~v~elL~~V 96 (268)
T COG4608 79 --------KLS------------------------------------------------------KEERRERVLELLEKV 96 (268)
T ss_pred --------hcc------------------------------------------------------hhHHHHHHHHHHHHh
Confidence 000 012245678889999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~ 322 (555)
|++.+.++|+|++|||||+||++|||||+.+|+++++|||||+||+..+..+.++|. +.|.|++|||||++.+..+
T Consensus 97 gl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 97 GLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred CCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 999999999999999999999999999999999999999999999988888877764 4699999999999999999
Q ss_pred cceeEEecCCeEeeccCChH
Q 008750 323 CTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~ 342 (555)
||||++|..|+++.. |+-+
T Consensus 177 sdri~VMy~G~iVE~-g~~~ 195 (268)
T COG4608 177 SDRIAVMYLGKIVEI-GPTE 195 (268)
T ss_pred cccEEEEecCceeEe-cCHH
Confidence 999999999998654 4433
No 280
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.3e-40 Score=318.86 Aligned_cols=193 Identities=27% Similarity=0.380 Sum_probs=152.1
Q ss_pred EEEEeEEEEeCCc-----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 98 VKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 98 i~l~nls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
|+++||+++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~i~~~~q~~~l 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---SIAYVSQEPWI 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---EEEEEecCchh
Confidence 4789999999753 699999999999999999999999999999999999999999999987 79999999987
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTA 250 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~ 250 (555)
+ ..|+.+|+........ .... .... .. .+ ...+..+ |+.
T Consensus 78 ~-~~t~~enl~~~~~~~~---~~~~---~~~~------------------------~~---~l----~~~~~~~~~~~~- 118 (204)
T cd03250 78 Q-NGTIRENILFGKPFDE---ERYE---KVIK------------------------AC---AL----EPDLEILPDGDL- 118 (204)
T ss_pred c-cCcHHHHhccCCCcCH---HHHH---HHHH------------------------Hc---Cc----HHHHHhccCccc-
Confidence 5 6799999864311000 0000 0000 00 00 0111111 232
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHH-HHc---CCCceEEEEecCHHHHHhhccee
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLG---KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~-~l~---~~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++.+.+||||||||++|||||+.+|++|||||||++||+.+.+++.+ +++ +.+.|||++||+++++.. ||+|
T Consensus 119 ~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i 197 (204)
T cd03250 119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQI 197 (204)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEE
Confidence 23456688999999999999999999999999999999999999888876 343 347899999999999987 9999
Q ss_pred EEecCCe
Q 008750 327 VETEMGV 333 (555)
Q Consensus 327 ~~l~~G~ 333 (555)
++|++|+
T Consensus 198 ~~l~~G~ 204 (204)
T cd03250 198 VVLDNGR 204 (204)
T ss_pred EEEeCCC
Confidence 9999874
No 281
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-40 Score=373.46 Aligned_cols=245 Identities=24% Similarity=0.398 Sum_probs=190.2
Q ss_pred HHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc---eeeeeeeEEEECCCEEEEEcCCCcc
Q 008750 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAG 135 (555)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NGsG 135 (555)
+.+|..+...+|..-+.+++...... .........+.|+++||+|+|+.+ ++|+|+||+|++|+.+|||||+|||
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCC
Confidence 56666666766666554432221110 000012345669999999999754 5999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh----HHHHHHHHHHHHHHH
Q 008750 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEIAGKLERVQK 201 (555)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~~~~~~~~~~ 201 (555)
|||.+.+|-..|.|++|.|.+||.++ +||.|.|+|.+ |+.|++||+..+. .+++..+++..+++.
T Consensus 1029 KSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1029 KSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL-FNGTIRENIAYGSEEVSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchh-hcccHHHHHhccCCCCCHHHHHHHHHHhhhHH
Confidence 99999999999999999999999764 59999999988 8899999998762 223333333333333
Q ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEE
Q 008750 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (555)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lL 281 (555)
++.+. -+ |++....+|. .+||||||||+|||||+++||+||
T Consensus 1108 FI~sL------------------------------------P~--GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkIL 1148 (1228)
T KOG0055|consen 1108 FISSL------------------------------------PQ--GYDTRVGERG-VQLSGGQKQRIAIARAILRNPKIL 1148 (1228)
T ss_pred HHhcC------------------------------------cC--cccCccCccc-CcCCchHHHHHHHHHHHHcCCCee
Confidence 33221 11 4444444443 489999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 282 lLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
||||.||+||.++++.+.+.|.+ .|+|.|+|+|+++.+. .||.|+|+++|++ .-.|+.++.+..
T Consensus 1149 LLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq-naD~I~Vi~~G~V-vE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1149 LLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ-NADVIAVLKNGKV-VEQGTHDELLAK 1214 (1228)
T ss_pred eeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh-cCCEEEEEECCEE-EecccHHHHHhC
Confidence 99999999999999999999965 6999999999999996 5999999999997 457888877653
No 282
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.9e-40 Score=332.42 Aligned_cols=199 Identities=22% Similarity=0.375 Sum_probs=159.9
Q ss_pred cEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEE
Q 008750 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig 164 (555)
.|+++||+++|+ +.++|+||||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.+. .|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 389999999994 4679999999999999999999999999999999999997 789999998542 599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|+||++.++. .|+++|+..... . ...++.++++
T Consensus 81 ~v~q~~~lf~-~tv~~nl~~~~~--~--------------------------------------------~~~~~~~~l~ 113 (275)
T cd03289 81 VIPQKVFIFS-GTFRKNLDPYGK--W--------------------------------------------SDEEIWKVAE 113 (275)
T ss_pred EECCCcccch-hhHHHHhhhccC--C--------------------------------------------CHHHHHHHHH
Confidence 9999998854 699999742100 0 0011222233
Q ss_pred hcCCCccccCCCC-----------CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 245 ELGFTADDGDRLV-----------ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 245 ~lgl~~~~~~~~~-----------~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.+|+. ...++.+ ..||||||||++|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+
T Consensus 114 ~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~ 192 (275)
T cd03289 114 EVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVIL 192 (275)
T ss_pred HcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33332 1223333 45999999999999999999999999999999999999999998864 4789999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||||++++.. ||||++|++|++. +.|...+...
T Consensus 193 isH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 225 (275)
T cd03289 193 SEHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLLN 225 (275)
T ss_pred EECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHhh
Confidence 9999999975 9999999999985 4566666554
No 283
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=327.37 Aligned_cols=209 Identities=19% Similarity=0.238 Sum_probs=170.7
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~-------- 161 (555)
++.+.+++++++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4568999999999988999999999999999999999999999999999999986 799999987532
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.++|++|++.++ ..|+.+|+...... . .. ......
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~---------------~------------------------~~-~~~~~~ 124 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRL---------------N------------------------RY-KGDLGD 124 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhh---------------c------------------------Cc-hHHHHH
Confidence 489999998775 68999998532100 0 00 001123
Q ss_pred HHHHHhhhcCCCcc---ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~~---~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+... ..++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+|
T Consensus 125 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~i 204 (261)
T PRK14263 125 RVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204 (261)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 45566667776421 33567889999999999999999999999999999999999999999998864 36899999
Q ss_pred ecCHHHHHhhcceeEEec--------CCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETE--------MGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~--------~G~~~~~~G~y~~~~ 345 (555)
|||++++..+||+|++|+ +|+++ ..|..+++.
T Consensus 205 sH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~~~~~ 244 (261)
T PRK14263 205 THNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPTAQIF 244 (261)
T ss_pred eCCHHHHHHhCCEEEEEecccccccCCceEE-EeCCHHHHH
Confidence 999999999999999996 78764 456666554
No 284
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.2e-40 Score=363.78 Aligned_cols=212 Identities=22% Similarity=0.392 Sum_probs=175.4
Q ss_pred CccEEEEeEEEEeC-----------CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---
Q 008750 95 SSGVKLENISKSYK-----------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~-----------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--- 160 (555)
.++|+++||++.|+ ++++|+||||+|++||++||+|+||||||||+|+|+|++ |++|+|.++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccc
Confidence 45799999999995 357999999999999999999999999999999999999 589999998742
Q ss_pred ----------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 008750 161 ----------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (555)
Q Consensus 161 ----------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (555)
..++|++|++. +++..||.+|+...... .. .
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~---------------~~----------------------~ 394 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV---------------HQ----------------------P 394 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh---------------cc----------------------c
Confidence 24899999973 66678999998532100 00 0
Q ss_pred hcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----
Q 008750 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (555)
Q Consensus 229 ~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---- 304 (555)
.........++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 0011122456778899999964457899999999999999999999999999999999999999999999988752
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.|.|||+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 514 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGDCERVF 514 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcCHHHHh
Confidence 4899999999999999999999999999874 566665543
No 285
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.9e-40 Score=368.33 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=174.8
Q ss_pred CccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
.++|+++||++.|++ .++|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.+++ ..+|||++|++.
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-~~~igyv~Q~~~-- 582 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-KVRMAVFSQHHV-- 582 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-ceeEEEEecccc--
Confidence 467999999999964 5699999999999999999999999999999999999999999999875 457999999863
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
...++.++....+. . ... ...+.++..+|..+|+.....
T Consensus 583 ~~l~~~~~~~~~~~-------------------------------------~---~~~-~~~~~~i~~~L~~~gl~~~~~ 621 (718)
T PLN03073 583 DGLDLSSNPLLYMM-------------------------------------R---CFP-GVPEQKLRAHLGSFGVTGNLA 621 (718)
T ss_pred ccCCcchhHHHHHH-------------------------------------H---hcC-CCCHHHHHHHHHHCCCChHHh
Confidence 22344333211000 0 000 011345778899999975567
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
++++.+|||||||||+|||+|+.+|++|||||||||||+.+++++.+.|.+++.|||+||||+.++..+||+|++|++|+
T Consensus 622 ~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 622 LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999999998766799999999999999999999999999
Q ss_pred EeeccCChHHHHH
Q 008750 334 SRTYEGNYSQYVL 346 (555)
Q Consensus 334 ~~~~~G~y~~~~~ 346 (555)
+..+.|+|++|..
T Consensus 702 i~~~~g~~~~~~~ 714 (718)
T PLN03073 702 VTPFHGTFHDYKK 714 (718)
T ss_pred EEEeCCCHHHHHH
Confidence 8778999988753
No 286
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-39 Score=317.02 Aligned_cols=185 Identities=25% Similarity=0.372 Sum_probs=155.3
Q ss_pred ccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceE
Q 008750 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~i 163 (555)
..|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 45899999999975 479999999999999999999999999999999999999999999998853 259
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.++ ..|+.+|+..... . ....+.+.+
T Consensus 85 ~~v~q~~~~~-~~tv~~~l~~~~~-------------------~---------------------------~~~~~~~~l 117 (207)
T cd03369 85 TIIPQDPTLF-SGTIRSNLDPFDE-------------------Y---------------------------SDEEIYGAL 117 (207)
T ss_pred EEEecCCccc-CccHHHHhcccCC-------------------C---------------------------CHHHHHHHh
Confidence 9999998765 4699998732100 0 001111222
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ .++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|+|++|||++++..
T Consensus 118 ~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 118 R--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred h--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 2 2456789999999999999999999999999999999999999999998864 37899999999999976
Q ss_pred hcceeEEecCCeEee
Q 008750 322 LCTKIVETEMGVSRT 336 (555)
Q Consensus 322 ~~dri~~l~~G~~~~ 336 (555)
||++++|++|++..
T Consensus 190 -~d~v~~l~~g~i~~ 203 (207)
T cd03369 190 -YDKILVMDAGEVKE 203 (207)
T ss_pred -CCEEEEEECCEEEe
Confidence 99999999998753
No 287
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.3e-40 Score=321.54 Aligned_cols=201 Identities=25% Similarity=0.373 Sum_probs=157.3
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 799999999964 479999999999999999999999999999999999999999999998743 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++ ..|+.+|+..... .. ...+...+ ... .+...+..+ .
T Consensus 83 ~~q~~~l~-~~tv~enl~~~~~--~~----~~~~~~~~------------------------~~~---~l~~~~~~l--~ 126 (221)
T cd03244 83 IPQDPVLF-SGTIRSNLDPFGE--YS----DEELWQAL------------------------ERV---GLKEFVESL--P 126 (221)
T ss_pred ECCCCccc-cchHHHHhCcCCC--CC----HHHHHHHH------------------------HHh---CcHHHHHhc--c
Confidence 99998864 5699998742100 00 00000000 000 011111111 1
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhc
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~ 323 (555)
.|+.. ..++.+..|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++|||++++.. |
T Consensus 127 ~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 204 (221)
T cd03244 127 GGLDT-VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S 204 (221)
T ss_pred ccccc-ccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C
Confidence 23432 24567889999999999999999999999999999999999999999998864 46899999999999975 9
Q ss_pred ceeEEecCCeEee
Q 008750 324 TKIVETEMGVSRT 336 (555)
Q Consensus 324 dri~~l~~G~~~~ 336 (555)
|+|++|++|++..
T Consensus 205 d~i~~l~~g~~~~ 217 (221)
T cd03244 205 DRILVLDKGRVVE 217 (221)
T ss_pred CEEEEEECCeEEe
Confidence 9999999998743
No 288
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-40 Score=362.31 Aligned_cols=214 Identities=19% Similarity=0.279 Sum_probs=174.4
Q ss_pred CccEEEEeEEEEeC---CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCCC----------
Q 008750 95 SSGVKLENISKSYK---GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSN---------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~---~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~g~~---------- 160 (555)
.++|+++||++.|+ ++++|+||||+|++||++||+|+||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 35799999999994 4579999999999999999999999999999999999998 599999998743
Q ss_pred -ceEEEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 -MKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 -~~ig~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++ .+++..||.+|+....... +... ...+.....
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-------------~~~~---------------------~~~~~~~~~ 382 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR-------------FTGG---------------------SRIDDAAEL 382 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh-------------hccC---------------------cccChHHHH
Confidence 2489999996 3566789999985321000 0000 000011123
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|. +.|.|||+||
T Consensus 383 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~s 462 (506)
T PRK13549 383 KTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462 (506)
T ss_pred HHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4678889999996446789999999999999999999999999999999999999999999888764 4689999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
||++++.++||++++|++|++. +.|..++
T Consensus 463 Hd~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 491 (506)
T PRK13549 463 SELPEVLGLSDRVLVMHEGKLK-GDLINHN 491 (506)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EEecccc
Confidence 9999999999999999999974 5555544
No 289
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-40 Score=323.46 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=161.9
Q ss_pred EEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
|+++|++++|+ ++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999996 56799999999999999999999999999999999999999999999988532 48999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.++ ..|+.+|+......... ..+...+ .. ..+.+.+..+
T Consensus 81 ~q~~~~~-~~tv~~nl~~~~~~~~~-----~~~~~~~------------------------~~-------~~l~~~~~~l 123 (236)
T cd03253 81 PQDTVLF-NDTIGYNIRYGRPDATD-----EEVIEAA------------------------KA-------AQIHDKIMRF 123 (236)
T ss_pred CCCChhh-cchHHHHHhhcCCCCCH-----HHHHHHH------------------------HH-------cCcHHHHHhc
Confidence 9998775 57999998543110000 0000000 00 0111222222
Q ss_pred --CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhh
Q 008750 247 --GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 --gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~ 322 (555)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.+ .+.|||+|||+++++..
T Consensus 124 ~~~~~-~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~- 201 (236)
T cd03253 124 PDGYD-TIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN- 201 (236)
T ss_pred ccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-
Confidence 333 234667889999999999999999999999999999999999999999888753 28899999999999975
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++|++|++. +.|...++.
T Consensus 202 ~d~~~~l~~g~i~-~~~~~~~~~ 223 (236)
T cd03253 202 ADKIIVLKDGRIV-ERGTHEELL 223 (236)
T ss_pred CCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999874 556655543
No 290
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.6e-40 Score=312.46 Aligned_cols=162 Identities=26% Similarity=0.428 Sum_probs=145.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 469999999999 9999999999999999999999999999999999999999999998743 2599
Q ss_pred EEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 165 FLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 165 ~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
|++|++ .+++..|+.||+...
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~-------------------------------------------------------- 102 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALS-------------------------------------------------------- 102 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHH--------------------------------------------------------
Confidence 999985 456778998886310
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
. .||||||||++|||||+.+|++|||||||++||+.+++.+.+.+.+ .+.|+|++|||+++
T Consensus 103 ----------~------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 166 (182)
T cd03215 103 ----------S------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE 166 (182)
T ss_pred ----------h------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 0 0999999999999999999999999999999999999999988753 47899999999999
Q ss_pred HHhhcceeEEecCCe
Q 008750 319 LDQLCTKIVETEMGV 333 (555)
Q Consensus 319 l~~~~dri~~l~~G~ 333 (555)
+..+||+|++|++|+
T Consensus 167 ~~~~~d~v~~l~~G~ 181 (182)
T cd03215 167 LLGLCDRILVMYEGR 181 (182)
T ss_pred HHHhCCEEEEecCCc
Confidence 999999999999886
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=7.3e-40 Score=310.53 Aligned_cols=162 Identities=33% Similarity=0.478 Sum_probs=144.6
Q ss_pred EEEEeEEEEeCCc--eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEE
Q 008750 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v 166 (555)
|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999764 79999999999999999999999999999999999999999999999853 248999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.++ ..|+++|+
T Consensus 81 ~q~~~~~-~~tv~~~i---------------------------------------------------------------- 95 (178)
T cd03247 81 NQRPYLF-DTTLRNNL---------------------------------------------------------------- 95 (178)
T ss_pred ccCCeee-cccHHHhh----------------------------------------------------------------
Confidence 9988664 35665542
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~d 324 (555)
+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|.+ .+.|+|++|||++++. .||
T Consensus 96 ----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d 164 (178)
T cd03247 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMD 164 (178)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCC
Confidence 357999999999999999999999999999999999999999888753 4789999999999996 699
Q ss_pred eeEEecCCeEe
Q 008750 325 KIVETEMGVSR 335 (555)
Q Consensus 325 ri~~l~~G~~~ 335 (555)
++++|++|++.
T Consensus 165 ~~~~l~~g~i~ 175 (178)
T cd03247 165 KILFLENGKII 175 (178)
T ss_pred EEEEEECCEEE
Confidence 99999999874
No 292
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-40 Score=306.23 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++||+++..++.+|++|||++++||++|||||||||||||||.|+|.+.|++|++.++|.+. .-+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 48999999999999999999999999999999999999999999999999999999999998753 46999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHhh
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKLMP 244 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 244 (555)
||+..+.|..||+|.+..+.... ..+.. +..+.++++|.
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~---------------------------------------~~g~~~~e~~~i~~~ala 121 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPH---------------------------------------RSGREPEEDERIAAQALA 121 (259)
T ss_pred ccCcccccceEHHHHHHhccccc---------------------------------------ccCCCchhhHHHHHHHHH
Confidence 99999999999999875432100 00011 12233566677
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhcc------CCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecC
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD 315 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~------~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd 315 (555)
..++. .+..|...+|||||||||.|||+|++ ++.+|+||||||+||........+.. .+.|..|+.|=||
T Consensus 122 ~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHD 200 (259)
T COG4559 122 ATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD 200 (259)
T ss_pred HcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 77775 45678888999999999999999987 44589999999999998877766654 3568999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++.+..+||||++|.+|++ +..|...+.+.
T Consensus 201 LNLAA~YaDrivll~~Grv-~a~g~p~~vlt 230 (259)
T COG4559 201 LNLAAQYADRIVLLHQGRV-IASGSPQDVLT 230 (259)
T ss_pred chHHHHhhheeeeeeCCeE-eecCCHHHhcC
Confidence 9999999999999999997 56777665543
No 293
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.1e-39 Score=313.54 Aligned_cols=170 Identities=29% Similarity=0.387 Sum_probs=151.3
Q ss_pred cEEEEeEEEEeCC------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCCC-------c
Q 008750 97 GVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-------M 161 (555)
Q Consensus 97 ~i~l~nls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~g~~-------~ 161 (555)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4899999999975 67999999999999999999999999999999999999 9999999998854 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.++|++|++.+++..|+.+|+.... .
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~---------------------------------------------------~--- 108 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA---------------------------------------------------K--- 108 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH---------------------------------------------------H---
Confidence 5899999998877889998863110 0
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH-
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA- 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~- 317 (555)
..+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||++
T Consensus 109 ---------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 173 (194)
T cd03213 109 ---------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173 (194)
T ss_pred ---------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchH
Confidence 007999999999999999999999999999999999999999888753 4889999999996
Q ss_pred HHHhhcceeEEecCCeEe
Q 008750 318 FLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~ 335 (555)
++..+||+|++|++|++.
T Consensus 174 ~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 174 EIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHhcCEEEEEeCCEEE
Confidence 788899999999999874
No 294
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-40 Score=361.37 Aligned_cols=210 Identities=15% Similarity=0.266 Sum_probs=169.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
.++|+++|+++.|+ .+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..|
T Consensus 263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 45799999999874 48999999999999999999999999999999999999999999998742 248
Q ss_pred EEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
+|++|++ .+++..||.+|+......... ..... . ..........++.
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~------~--------------~~~~~~~~~~~~~ 390 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDG----------GYKGA------M--------------GLFHEVDEQRTAE 390 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccc----------ccccc------c--------------cccChHHHHHHHH
Confidence 9999984 466788999997532100000 00000 0 0000011124567
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~ 317 (555)
++++.+|+..+..++++.+|||||||||+|||||+.+|+||||||||++||+.+.+.+.++|+ +.|.|||+||||++
T Consensus 391 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~ 470 (510)
T PRK09700 391 NQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP 470 (510)
T ss_pred HHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 889999996456799999999999999999999999999999999999999999999998875 35899999999999
Q ss_pred HHHhhcceeEEecCCeEee
Q 008750 318 FLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~ 336 (555)
++..+||+|++|++|++..
T Consensus 471 ~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 471 EIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHhhCCEEEEEECCEEEE
Confidence 9999999999999999753
No 295
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.5e-40 Score=309.04 Aligned_cols=157 Identities=30% Similarity=0.541 Sum_probs=139.8
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 478999999975 469999999999999999999999999999999999999999999998743 25899
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++ .|+.+| +
T Consensus 81 ~~q~~~~~~-~tv~~~-------------------------------------------------------------l-- 96 (173)
T cd03246 81 LPQDDELFS-GSIAEN-------------------------------------------------------------I-- 96 (173)
T ss_pred ECCCCcccc-CcHHHH-------------------------------------------------------------C--
Confidence 999986543 365432 0
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|++|||++++. +
T Consensus 97 --------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~ 161 (173)
T cd03246 97 --------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S 161 (173)
T ss_pred --------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h
Confidence 999999999999999999999999999999999999999888743 5789999999999995 7
Q ss_pred cceeEEecCCe
Q 008750 323 CTKIVETEMGV 333 (555)
Q Consensus 323 ~dri~~l~~G~ 333 (555)
||+|++|++|+
T Consensus 162 ~d~v~~l~~G~ 172 (173)
T cd03246 162 ADRILVLEDGR 172 (173)
T ss_pred CCEEEEEECCC
Confidence 99999999885
No 296
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-39 Score=343.72 Aligned_cols=208 Identities=22% Similarity=0.283 Sum_probs=169.1
Q ss_pred CccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc
Q 008750 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (555)
Q Consensus 95 ~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~ 171 (555)
.++++++||++.|++ +++|+|+||+|.+|+++||+|+||||||||+++|+|+++|++|+|.++|... ++.+.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---~i~~~~~ 95 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---LIAISSG 95 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---eEEeccc
Confidence 457999999999976 4699999999999999999999999999999999999999999999987543 3333444
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+.+..|+.+|+..... .. .........++..+++.+|+. .
T Consensus 96 l~~~lTV~EnL~l~~~---------------~~------------------------~~~~~e~~e~i~elLe~lgL~-~ 135 (549)
T PRK13545 96 LNGQLTGIENIELKGL---------------MM------------------------GLTKEKIKEIIPEIIEFADIG-K 135 (549)
T ss_pred cCCCCcHHHHHHhhhh---------------hc------------------------CCCHHHHHHHHHHHHHHcCCh-h
Confidence 5566799998743110 00 001112234466778888885 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|. +.|.|||+||||++++..+||+|++
T Consensus 136 ~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIiv 215 (549)
T PRK13545 136 FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALW 215 (549)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence 5688899999999999999999999999999999999999999999888874 3589999999999999999999999
Q ss_pred ecCCeEeeccCChHHHHH
Q 008750 329 TEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 329 l~~G~~~~~~G~y~~~~~ 346 (555)
|++|++. +.|..+++..
T Consensus 216 L~~GkIv-~~G~~~el~~ 232 (549)
T PRK13545 216 LHYGQVK-EYGDIKEVVD 232 (549)
T ss_pred EECCEEE-EECCHHHHHh
Confidence 9999874 4566655544
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.3e-40 Score=359.85 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=170.7
Q ss_pred CccEEEEeEEEEe---CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCC----------
Q 008750 95 SSGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN---------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y---~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~---------- 160 (555)
..+|+++|++++| +++.+|+|+||+|.+||++||+|+||||||||+|+|+|+++| ++|+|.++|.+
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 3479999999999 345799999999999999999999999999999999999985 89999998743
Q ss_pred -ceEEEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 -MKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 -~~ig~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.+++|++|++ .+++..||.+|+........ ... .........
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~-------------~~~---------------------~~~~~~~~~ 380 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF-------------CFK---------------------MRIDAAAEL 380 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhh-------------ccC---------------------CcCCHHHHH
Confidence 2489999996 46678899999853210000 000 000011123
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++. +.|.|||+||
T Consensus 381 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs 460 (500)
T TIGR02633 381 QIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460 (500)
T ss_pred HHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5677889999996445789999999999999999999999999999999999999999998887653 4689999999
Q ss_pred cCHHHHHhhcceeEEecCCeEe
Q 008750 314 HDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~ 335 (555)
||++++.++||+|++|++|++.
T Consensus 461 Hd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 461 SELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred CCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999874
No 298
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.4e-39 Score=360.47 Aligned_cols=259 Identities=20% Similarity=0.325 Sum_probs=185.8
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~ 126 (555)
.+......+...+.+...++++.+....+.........+. .......|+++||+|+|++ +++|+|+||+|++|+++
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~ 364 (585)
T TIGR01192 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPE---LPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTV 364 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCC---CCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEE
Confidence 4444444455667777777777765543321111000000 0112345999999999975 57999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.+ ++.|++||+..+.... . .
T Consensus 365 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-f~~ti~~Ni~~~~~~~-~----~ 438 (585)
T TIGR01192 365 AIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL-FNRSIRENIRLGREGA-T----D 438 (585)
T ss_pred EEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc-CcccHHHHHhcCCCCC-C----H
Confidence 99999999999999999999999999999998642 59999999987 5689999996531100 0 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+++...++ .......+.++.. |++. ........||||||||++|||||+.
T Consensus 439 ~~~~~a~~---------------------------~~~~~~~i~~l~~--g~~t-~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 439 EEVYEAAK---------------------------AAAAHDFILKRSN--GYDT-LVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred HHHHHHHH---------------------------HhCcHHHHHhccc--cccc-hhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 00000000 0001111111111 3332 2334567899999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+|++|||||||++||+.+++.+.+.|.+ .+.|+|+|||+++.+. .||+|++|++|++. ..|+++++.+.
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~~ 559 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLI-EKGSFQELIQK 559 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEE-EECCHHHHHHC
Confidence 9999999999999999999999988754 4899999999999996 59999999999874 57887776543
No 299
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-39 Score=362.98 Aligned_cols=256 Identities=23% Similarity=0.387 Sum_probs=184.8
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCC
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGE 124 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge 124 (555)
.++......+.+.+.++...+++.+....+.+.... ..+. ......|+++||+|+|++ +++|+|+||+|++||
T Consensus 285 ~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~----~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~ 359 (571)
T TIGR02203 285 RPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG-TRAI----ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGE 359 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCC----CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCC
Confidence 355555555666777777777766654332211110 0000 012345999999999964 579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.+ |+.|++||+.........
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~~~--- 435 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL-FNDTIANNIAYGRTEQAD--- 435 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc-ccccHHHHHhcCCCCCCC---
Confidence 9999999999999999999999999999999998542 59999999987 788999998643110000
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGK 272 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAr 272 (555)
.+++.+.+. . . .+.+.+.++ |++....+ .-..||||||||++|||
T Consensus 436 -~~~i~~~l~------------------------~---~----~l~~~i~~lp~gldt~i~~-~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 436 -RAEIERALA------------------------A---A----YAQDFVDKLPLGLDTPIGE-NGVLLSGGQRQRLAIAR 482 (571)
T ss_pred -HHHHHHHHH------------------------H---c----ChHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHH
Confidence 000000000 0 0 111222222 33322222 23579999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+.+|+||||||||++||..+.+.+.+.|.+ .++|+|+||||...+. .||+|++|++|++. ..|++++.+.
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~-~~g~~~~l~~ 556 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIV-ERGTHNELLA 556 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEE-eeCCHHHHHH
Confidence 99999999999999999999999999988865 4799999999999885 69999999999874 5677777654
No 300
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.2e-40 Score=312.78 Aligned_cols=173 Identities=32% Similarity=0.521 Sum_probs=143.0
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccH
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv 178 (555)
+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+.. + ... ...
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~-----~---~~~-~~~ 71 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA-----S---LSP-KEL 71 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC-----c---CCH-HHH
Confidence 4789999998888999999999999999999999999999999999999999999999864320 0 000 000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008750 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (555)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (555)
+..+. .+.++++.+|+. ...++.+.
T Consensus 72 ~~~i~------------------------------------------------------~~~q~l~~~gl~-~~~~~~~~ 96 (180)
T cd03214 72 ARKIA------------------------------------------------------YVPQALELLGLA-HLADRPFN 96 (180)
T ss_pred HHHHh------------------------------------------------------HHHHHHHHcCCH-hHhcCCcc
Confidence 00000 000155667775 34577889
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 259 ~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
+|||||+||++|||||+.+|++|||||||++||+.+++++.+.+++ . +.|+|++|||++++..+||++++|++|++
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999988753 2 78999999999999999999999999986
Q ss_pred e
Q 008750 335 R 335 (555)
Q Consensus 335 ~ 335 (555)
.
T Consensus 177 ~ 177 (180)
T cd03214 177 V 177 (180)
T ss_pred E
Confidence 4
No 301
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.3e-39 Score=321.37 Aligned_cols=194 Identities=21% Similarity=0.310 Sum_probs=159.3
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCCC--------ceEEEEecccc--cCcCcc
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIAFLSQEFE--VSMSRT 177 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~g~~--------~~ig~v~Q~~~--~~~~~t 177 (555)
+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..++|++|++. +....|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 58999999999999999999999999999999999999 89999999853 26999999985 334578
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc--cccCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDR 255 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~ 255 (555)
+.+++...... .. ........++.++++.+|+.. ...++
T Consensus 81 ~~~~~~~~~~~---------------~~------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 121 (230)
T TIGR02770 81 MGNHAIETLRS---------------LG------------------------KLSKQARALILEALEAVGLPDPEEVLKK 121 (230)
T ss_pred HHHHHHHHHHH---------------cC------------------------ccHHHHHHHHHHHHHHcCCCchHHHHhC
Confidence 88876432100 00 000112345777888999863 45688
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecC
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .+.|||++|||++++..+||+|++|++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999998887753 478999999999999999999999999
Q ss_pred CeEeeccCChHHHH
Q 008750 332 GVSRTYEGNYSQYV 345 (555)
Q Consensus 332 G~~~~~~G~y~~~~ 345 (555)
|++. ..|..+++.
T Consensus 202 G~i~-~~~~~~~~~ 214 (230)
T TIGR02770 202 GRIV-ERGTVKEIF 214 (230)
T ss_pred CEEE-EeCCHHHHH
Confidence 9974 456655543
No 302
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-39 Score=321.80 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCC--------------------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q 008750 97 GVKLENISKSYKG--------------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (555)
Q Consensus 97 ~i~l~nls~~y~~--------------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (555)
.|+++||+++|.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3777888877721 24999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 157 ~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
+|. +++++|++.+.+..|+.+|+..... .. ........
T Consensus 84 ~g~---~~~~~~~~~~~~~~tv~enl~~~~~---------------~~------------------------~~~~~~~~ 121 (264)
T PRK13546 84 NGE---VSVIAISAGLSGQLTGIENIEFKML---------------CM------------------------GFKRKEIK 121 (264)
T ss_pred CCE---EeEEecccCCCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHH
Confidence 873 6788888777677899998743210 00 00011122
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
..+..+++.+++. ...++++.+|||||+|||+||+||+.+|++|||||||++||+.+.+.+.+.|. +.+.|||+||
T Consensus 122 ~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiis 200 (264)
T PRK13546 122 AMTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS 200 (264)
T ss_pred HHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 3345566677775 45688899999999999999999999999999999999999999988888764 3589999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++..+||+|++|++|++. ..|.++++..
T Consensus 201 H~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~ 232 (264)
T PRK13546 201 HNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLP 232 (264)
T ss_pred CCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHH
Confidence 9999999999999999999974 5577776654
No 303
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-39 Score=311.11 Aligned_cols=170 Identities=24% Similarity=0.332 Sum_probs=150.0
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCCC------ceEE
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN------MKIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~g~~------~~ig 164 (555)
.|+++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5899999999964 67999999999999999999999999999999999986 4899999998854 2699
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..|+++|+.... .+
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~-------------------------------------------------------~~- 106 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA-------------------------------------------------------LL- 106 (192)
T ss_pred EecccCccccCCcHHHHHHHHH-------------------------------------------------------HH-
Confidence 9999988878889999874210 00
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH-HHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~-~l~ 320 (555)
.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.+++ .+.|+|+||||++ .+.
T Consensus 107 -------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~ 173 (192)
T cd03232 107 -------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIF 173 (192)
T ss_pred -------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHH
Confidence 07999999999999999999999999999999999999999988753 4899999999998 477
Q ss_pred hhcceeEEecC-CeEe
Q 008750 321 QLCTKIVETEM-GVSR 335 (555)
Q Consensus 321 ~~~dri~~l~~-G~~~ 335 (555)
.+||+|++|++ |++.
T Consensus 174 ~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 174 EKFDRLLLLKRGGKTV 189 (192)
T ss_pred hhCCEEEEEcCCCeEE
Confidence 89999999998 8864
No 304
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5e-39 Score=355.57 Aligned_cols=252 Identities=24% Similarity=0.353 Sum_probs=184.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+...+.+..+.+++.+....+.+... .... ......|+++|++|+|++ +++|+|+||+|++|++
T Consensus 273 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~---~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~ 346 (544)
T TIGR01842 273 PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPL---PEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEA 346 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCC---CCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCE
Confidence 4455555556677777777777665433221110 0000 112345999999999964 5799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.++ +.|++||+.....+ ..
T Consensus 347 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~~-~~---- 420 (544)
T TIGR01842 347 LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF-PGTVAENIARFGEN-AD---- 420 (544)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc-cccHHHHHhccCCC-CC----
Confidence 999999999999999999999999999999998642 599999999874 56999998632100 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHH
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
.+++...++ ...+.+.++.+ |++. .......+||||||||++||||
T Consensus 421 ~~~~~~~~~-------------------------------~~~~~~~i~~l~~gl~t-~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 421 PEKIIEAAK-------------------------------LAGVHELILRLPDGYDT-VIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHHHHHHHH-------------------------------HhChHHHHHhCcccccc-ccCCCcCCCCHHHHHHHHHHHH
Confidence 000000000 00112233333 4432 2344567899999999999999
Q ss_pred hccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+.+|++|||||||++||+.+++.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++ ...|+++++.
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i-~~~g~~~~l~ 541 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRI-ARFGERDEVL 541 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEE-EeeCCHHHHh
Confidence 9999999999999999999999999988754 4789999999999875 6999999999987 4568776553
No 305
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.6e-39 Score=313.97 Aligned_cols=170 Identities=27% Similarity=0.388 Sum_probs=147.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------eEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~-----------~ig 164 (555)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+. .++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 4789999999888899999999999999999999999999999999999 579999999987431 399
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~l-------------------------------------------------------------- 98 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL-------------------------------------------------------------- 98 (200)
T ss_pred EeecChhhccCccHHHHH--------------------------------------------------------------
Confidence 999998776655654432
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~ 321 (555)
+....+|||||+||++|||||+.+|++|||||||++||+.+...+.+.|.+ .+.|||++||+++++..
T Consensus 99 ---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 99 ---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred ---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 011247999999999999999999999999999999999999999888753 47899999999999988
Q ss_pred -hcceeEEecCCeEeeccC
Q 008750 322 -LCTKIVETEMGVSRTYEG 339 (555)
Q Consensus 322 -~~dri~~l~~G~~~~~~G 339 (555)
+||+|++|++|++. ..|
T Consensus 170 ~~~d~i~~l~~G~i~-~~~ 187 (200)
T cd03217 170 IKPDRVHVLYDGRIV-KSG 187 (200)
T ss_pred hhCCEEEEEECCEEE-EEc
Confidence 79999999999874 344
No 306
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.6e-39 Score=324.38 Aligned_cols=199 Identities=29% Similarity=0.376 Sum_probs=165.2
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEec
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQ 168 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q 168 (555)
+++||++. .+|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.++|.+. .++|++|
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecc
Confidence 57888875 38999999999999999999999999999999999985 599999988532 4899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+...... .........++.++++.+|+
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~----------------------------------------~~~~~~~~~~~~~~l~~~~l 116 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPD----------------------------------------KTRTEAVASALNEVAEALGL 116 (248)
T ss_pred cCccCCCccHHHHHHhcCcc----------------------------------------CCCcHHHHHHHHHHHHHcCC
Confidence 98777888999987532100 00011123456778888998
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhcc-------CCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~-------~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
. ...++++..||||||||++|||||+. +|++|||||||++||+.++..+.++|++ .+.|||+||||+++
T Consensus 117 ~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~ 195 (248)
T PRK03695 117 D-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH 195 (248)
T ss_pred H-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 6 45688899999999999999999998 6799999999999999999999988753 47899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+..+||+|++|++|++. ..|..+++
T Consensus 196 ~~~~~d~i~~l~~G~i~-~~g~~~~~ 220 (248)
T PRK03695 196 TLRHADRVWLLKQGKLL-ASGRRDEV 220 (248)
T ss_pred HHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999974 56665543
No 307
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-40 Score=291.62 Aligned_cols=209 Identities=26% Similarity=0.415 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------------- 160 (555)
.|+++|+++.||...+|-||+|+.+.||.+.++||+|+|||||+|.+.=+.-|.+|+..+.+..
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999876532
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..+|+|+|...+++.+||.+|+..+... ...+...+...++.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~k--------------------------------------v~gl~~~qa~~~a~ 123 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCR--------------------------------------VLGLSKDQALARAE 123 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHH--------------------------------------HhCCCHHHHHHHHH
Confidence 2599999999999999999998653211 01223344566788
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~ 317 (555)
++|+.+.+. ..+||.|-.|||||+|||+|||||+++|++||+||||++|||+....+.++++ ..|.|-+||||..+
T Consensus 124 ellkrlrl~-~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 124 KLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHhccc-cccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 889999885 67899999999999999999999999999999999999999998888777765 46999999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++..+|.+|++|++|+++. .|+-+-|.
T Consensus 203 va~k~as~vvyme~g~ive-~g~a~~ft 229 (242)
T COG4161 203 VARKTASRVVYMENGHIVE-QGDASCFT 229 (242)
T ss_pred HHHhhhhheEeeecCeeEe-ecchhhcc
Confidence 9999999999999999754 45555443
No 308
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.9e-39 Score=321.47 Aligned_cols=213 Identities=21% Similarity=0.294 Sum_probs=167.0
Q ss_pred CCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------
Q 008750 93 SISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------- 160 (555)
...+.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 15 ~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 15 GLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred cCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 44567999999999976 579999999999999999999999999999999999999999999998743
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..|+|++|++.++ ..|+.+|+...... . ...+...+. ...+.
T Consensus 95 ~~i~~v~q~~~l~-~~tv~~nl~~~~~~--~----~~~~~~~l~-------------------------------~~~l~ 136 (257)
T cd03288 95 SRLSIILQDPILF-SGSIRFNLDPECKC--T----DDRLWEALE-------------------------------IAQLK 136 (257)
T ss_pred hhEEEECCCCccc-ccHHHHhcCcCCCC--C----HHHHHHHHH-------------------------------HhCcH
Confidence 2589999998765 46998886321000 0 000000000 00122
Q ss_pred HHhhhc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCH
Q 008750 241 KLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~ 316 (555)
++++.+ |++. ..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+++.+ .+.|+|++||++
T Consensus 137 ~~~~~~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~ 215 (257)
T cd03288 137 NMVKSLPGGLDA-VVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRV 215 (257)
T ss_pred HHHhhcccccCc-EeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecCh
Confidence 233333 4542 34567789999999999999999999999999999999999999999988754 489999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+.+.. ||+|++|++|++. ..|+.+++..
T Consensus 216 ~~~~~-~dri~~l~~G~i~-~~g~~~~~~~ 243 (257)
T cd03288 216 STILD-ADLVLVLSRGILV-ECDTPENLLA 243 (257)
T ss_pred HHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence 99986 9999999999974 5677666543
No 309
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.8e-39 Score=315.45 Aligned_cols=196 Identities=21% Similarity=0.351 Sum_probs=150.2
Q ss_pred EEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceE
Q 008750 99 KLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (555)
Q Consensus 99 ~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~i 163 (555)
.+.|+.|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999996 5679999999999999999999999999999999999999999999998742 258
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.++ ..|+.+|+........ .... ..+ ..+ .+...+. .+
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~~~~~---~~~~---~~~------------------------~~~---~l~~~~~-~~ 126 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGSPFNK---QRYK---AVT------------------------DAC---SLQPDID-LL 126 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcCcCCH---HHHH---HHH------------------------HHh---CcHHHHH-hC
Confidence 9999998775 6799999854211000 0000 000 000 0000010 00
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHH-----HHcCCCceEEEEecCHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-----YLGKQDVPMVIISHDRAF 318 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~-----~l~~~~~tvIiiSHd~~~ 318 (555)
..|+. ...++++..|||||+|||+|||||+.+|++|||||||++||+.+++.+.+ .+++.+.|+|++|||+++
T Consensus 127 -~~~~~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 127 -PFGDQ-TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred -cCccc-cCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 01221 22356788999999999999999999999999999999999999887766 344568999999999999
Q ss_pred HHhhcceeEEecCC
Q 008750 319 LDQLCTKIVETEMG 332 (555)
Q Consensus 319 l~~~~dri~~l~~G 332 (555)
+. .||++++|++|
T Consensus 205 ~~-~~d~i~~l~~G 217 (218)
T cd03290 205 LP-HADWIIAMKDG 217 (218)
T ss_pred Hh-hCCEEEEecCC
Confidence 96 69999999887
No 310
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4e-39 Score=365.92 Aligned_cols=256 Identities=21% Similarity=0.363 Sum_probs=185.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
++......+.+++.+..+.+++.+....+.+.... ..... ......|+++||+|+|++ +++|+|+||+|++|++
T Consensus 410 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~---~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 485 (694)
T TIGR01846 410 PVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAAL---PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEF 485 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCC---CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCE
Confidence 44444444555666666666665544322211110 00000 112345999999999953 4699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ ++.|++||+...... ..
T Consensus 486 vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l-f~~ti~eNi~~~~~~-~~---- 559 (694)
T TIGR01846 486 IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL-FSRSIRDNIALCNPG-AP---- 559 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee-hhhhHHHHHhcCCCC-CC----
Confidence 999999999999999999999999999999998653 48999999887 678999999643110 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHH
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
.+.+...++ ... +.+.+..+ |++... .....+||||||||++||||
T Consensus 560 ~~~i~~a~~---------------------------~~~----l~~~i~~lp~gl~t~i-~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 560 FEHVIHAAK---------------------------LAG----AHDFISELPQGYNTEV-GEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHHHHHH---------------------------HcC----hHHHHHhCcCccCcEe-cCCCCCCCHHHHHHHHHHHH
Confidence 000000000 001 11222222 444332 33456899999999999999
Q ss_pred hccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|+.+|++|||||||++||+.+++.+.+.|.+ .++|+|+|||+++.+.. ||+|++|++|++ ...|++++....
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i-~~~g~~~~l~~~ 681 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQI-AESGRHEELLAL 681 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEE-EEeCCHHHHHHc
Confidence 9999999999999999999999999998865 47999999999999965 999999999997 467888776553
No 311
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.7e-39 Score=356.67 Aligned_cols=256 Identities=18% Similarity=0.245 Sum_probs=183.4
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
++......+..++.+..+.+++.+....+.+.... .... ....+.|+++|++|+|++ .++|+|+||+|++|++
T Consensus 269 pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~---~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~ 343 (569)
T PRK10789 269 PMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPV---PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQM 343 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCC---CCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCE
Confidence 34444444556677777777766654332211100 0000 112345999999999964 5699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.+ +..|++||+..+..+. .
T Consensus 344 ~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-f~~ti~~Ni~~~~~~~-~---- 417 (569)
T PRK10789 344 LGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL-FSDTVANNIALGRPDA-T---- 417 (569)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee-ccccHHHHHhcCCCCC-C----
Confidence 999999999999999999999999999999998642 59999999987 4679999986431100 0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+.+...++ .. .....+..+- .|++.. .+.....||||||||++|||||+
T Consensus 418 ~~~~~~~~~------------------------~~---~l~~~i~~lp--~gl~t~-~~~~g~~LSgGq~qRi~lARall 467 (569)
T PRK10789 418 QQEIEHVAR------------------------LA---SVHDDILRLP--QGYDTE-VGERGVMLSGGQKQRISIARALL 467 (569)
T ss_pred HHHHHHHHH------------------------Hc---CCHHHHHhCc--Ccccce-ecCCCCcCCHHHHHHHHHHHHHh
Confidence 000000000 00 0111111111 133322 23345689999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++. ..|++++...
T Consensus 468 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 538 (569)
T PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIA-QRGNHDQLAQ 538 (569)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEE-EecCHHHHHH
Confidence 99999999999999999999999988864 5899999999999986 59999999999874 6688776654
No 312
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.1e-39 Score=357.54 Aligned_cols=257 Identities=21% Similarity=0.342 Sum_probs=184.1
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
.+......+.+++.+..+.+++.+....+.+.......... ..+....|+++||+|+|++ +++|+|+||+|++||
T Consensus 290 pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge 367 (576)
T TIGR02204 290 SIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTL--PVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGE 367 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccC--CcCCCceEEEEEEEEECCCCCCCccccceeEEecCCC
Confidence 44445555566777777777776654332211100000000 0112345999999999964 569999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.+ ++.|++||+..+..+. .
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l-f~~Ti~~Ni~~~~~~~-~--- 442 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL-FAASVMENIRYGRPDA-T--- 442 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc-ccccHHHHHhcCCCCC-C---
Confidence 9999999999999999999999999999999998542 59999999887 7889999996532100 0
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGK 272 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAr 272 (555)
.+.+...++ .. . +.+.++.+ |++... ......||||||||++|||
T Consensus 443 -~~~~~~~l~------------------------~~---~----l~~~i~~l~~gl~t~i-~~~g~~LSgGq~Qrl~laR 489 (576)
T TIGR02204 443 -DEEVEAAAR------------------------AA---H----AHEFISALPEGYDTYL-GERGVTLSGGQRQRIAIAR 489 (576)
T ss_pred -HHHHHHHHH------------------------Hc---C----cHHHHHhCCCCCCcee-CCCCCcCCHHHHHHHHHHH
Confidence 000000000 00 0 11122222 443222 2334689999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
|++.+|++||||||||+||+.+++.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++. ..|++++...
T Consensus 490 al~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~-~~g~~~~l~~ 563 (576)
T TIGR02204 490 AILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIV-AQGTHAELIA 563 (576)
T ss_pred HHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-eeecHHHHHH
Confidence 99999999999999999999999998887764 4799999999999986 59999999999974 4677776543
No 313
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.1e-39 Score=386.35 Aligned_cols=257 Identities=20% Similarity=0.303 Sum_probs=184.3
Q ss_pred hHhHHHHHHHhhhHHHHhccCcchhhhhhcc-cccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEE
Q 008750 53 TVEKKSIAKAQSDVESLFSSSADEFENKKYS-NKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGL 128 (555)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~l 128 (555)
...+..++.+..+.+++++....+++..... ............+.|+++||+|+|++ .++|+|+||+|++|+++||
T Consensus 1120 ~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAI 1199 (1466)
T PTZ00265 1120 MSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAI 1199 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEE
Confidence 3344556777777777666554322110000 00000000112345999999999963 4799999999999999999
Q ss_pred EcCCCccHHHHHHHHHcCCCC------------------------------------------------------CceEE
Q 008750 129 VGVNGAGKTTQLRIIAGQEEP------------------------------------------------------DSGNV 154 (555)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p------------------------------------------------------~~G~I 154 (555)
||+||||||||+++|+|+|+| ++|+|
T Consensus 1200 VG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 1279 (1466)
T PTZ00265 1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI 1279 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE
Confidence 999999999999999999998 69999
Q ss_pred EEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Q 008750 155 IKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224 (555)
Q Consensus 155 ~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (555)
.++|.++ .||||+|++.+ |+.|++||+..+..+. ..+++..+++.
T Consensus 1280 ~idG~di~~~~~~~lR~~i~~V~Qep~L-F~gTIreNI~~g~~~a-----t~eeI~~A~k~------------------- 1334 (1466)
T PTZ00265 1280 LLDGVDICDYNLKDLRNLFSIVSQEPML-FNMSIYENIKFGKEDA-----TREDVKRACKF------------------- 1334 (1466)
T ss_pred EECCEEHHhCCHHHHHhhccEeCCCCcc-ccccHHHHHhcCCCCC-----CHHHHHHHHHH-------------------
Confidence 9999753 59999999988 7899999997642100 00001111100
Q ss_pred HHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC
Q 008750 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK 304 (555)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~ 304 (555)
..+.+.+..+-+ |++.... .....||||||||++|||||+.+|+|||||||||+||.++.+.+.+.|.+
T Consensus 1335 --------A~l~~fI~~LP~--GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1335 --------AAIDEFIESLPN--KYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred --------cCCHHHHHhCcc--ccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 011112222211 3332222 23457999999999999999999999999999999999999999888754
Q ss_pred ----CCceEEEEecCHHHHHhhcceeEEecC----CeEeeccCChHHHHH
Q 008750 305 ----QDVPMVIISHDRAFLDQLCTKIVETEM----GVSRTYEGNYSQYVL 346 (555)
Q Consensus 305 ----~~~tvIiiSHd~~~l~~~~dri~~l~~----G~~~~~~G~y~~~~~ 346 (555)
.++|+|+|||+++.+. .||+|++|++ |+++...|++++.+.
T Consensus 1404 ~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 3899999999999996 5999999999 886667899888764
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.6e-39 Score=310.24 Aligned_cols=183 Identities=20% Similarity=0.270 Sum_probs=155.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------eEEEEeccc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------~ig~v~Q~~ 170 (555)
+|+++|++++|+++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 378999999998766666 9999999999999999999999999999999999999999998643 489999998
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++..||.+|+...... .....++.++++.+|+.
T Consensus 80 ~~~~~~tv~~~l~~~~~~--------------------------------------------~~~~~~~~~~l~~~~l~- 114 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEI--------------------------------------------YNSAETLYAAIHYFKLH- 114 (195)
T ss_pred CCCccCCHHHHHHHHHHh--------------------------------------------cccHHHHHHHHHHcCCH-
Confidence 777889999998532100 00123455667778885
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhccee
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.++++ +.+.|+|+||||++++.. ||.|
T Consensus 115 ~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 115 DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 45688899999999999999999999999999999999999999999998874 468999999999999975 6654
No 315
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-39 Score=303.67 Aligned_cols=157 Identities=33% Similarity=0.573 Sum_probs=138.6
Q ss_pred EEEEeEEEEeCCc--eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEE
Q 008750 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~ 165 (555)
|+++|++++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999875 799999999999999999999999999999999999999999999988532 4889
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++ ..|+.|| +
T Consensus 81 ~~~~~~~~-~~t~~e~-------------------------------------------------------------l-- 96 (171)
T cd03228 81 VPQDPFLF-SGTIREN-------------------------------------------------------------I-- 96 (171)
T ss_pred EcCCchhc-cchHHHH-------------------------------------------------------------h--
Confidence 99887543 2344322 0
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhc
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~ 323 (555)
|||||+||++|||||+.+|++|||||||++||+.++..+.+++++ .+.|+|++|||++++.. |
T Consensus 97 --------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 161 (171)
T cd03228 97 --------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-A 161 (171)
T ss_pred --------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-C
Confidence 999999999999999999999999999999999999999888753 36899999999999987 9
Q ss_pred ceeEEecCCe
Q 008750 324 TKIVETEMGV 333 (555)
Q Consensus 324 dri~~l~~G~ 333 (555)
|++++|++|+
T Consensus 162 d~~~~l~~g~ 171 (171)
T cd03228 162 DRIIVLDDGR 171 (171)
T ss_pred CEEEEEcCCC
Confidence 9999998874
No 316
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-38 Score=352.62 Aligned_cols=239 Identities=21% Similarity=0.255 Sum_probs=175.9
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~ 126 (555)
++......+.+.+.+..+.+++.+....+.+.. ...... .+....|+++||+|+|++ .++|+|+||+|++|+++
T Consensus 278 pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~-~~~~~~----~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~ 352 (547)
T PRK10522 278 PLLSAVGALPTLLSAQVAFNKLNKLALAPYKAE-FPRPQA----FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELL 352 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cccccc----cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEE
Confidence 344444455567777777877766532211100 000000 011235999999999965 56999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|++|++.+ ++.|+++|-. ..
T Consensus 353 aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-f~~ti~~n~~-~~---------- 420 (547)
T PRK10522 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHL-FDQLLGPEGK-PA---------- 420 (547)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhH-HHHhhccccC-ch----------
Confidence 99999999999999999999999999999998642 59999999876 5667766510 00
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc--cCC--CCCCCChHHHHHHHHHH
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD--GDR--LVASFSSGWQMRMSLGK 272 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~--~~~--~~~~LSGGqrqRv~lAr 272 (555)
.++.+.++++.+|+.... .+. ...+||||||||++|||
T Consensus 421 --------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lAR 462 (547)
T PRK10522 421 --------------------------------------NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLL 462 (547)
T ss_pred --------------------------------------HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHH
Confidence 011122333334433211 011 12489999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChH
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
||+.+|++|||||||++||+.+++.+.+.+. ..++|+|+|||+++.+. .||+|++|++|++..+.|+-.
T Consensus 463 al~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 463 ALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence 9999999999999999999999998877663 24899999999998875 699999999999988877643
No 317
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-39 Score=309.19 Aligned_cols=176 Identities=24% Similarity=0.276 Sum_probs=150.9
Q ss_pred cEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCCCc--------
Q 008750 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM-------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~g~~~-------- 161 (555)
.+.++||+|.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 478999999995 4579999999999999999999999999999999999999 8999999988532
Q ss_pred -eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 -~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.++|++|++.+++..||.+|+..... .
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~---------------------------------------------------~- 110 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALR---------------------------------------------------C- 110 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhh---------------------------------------------------h-
Confidence 48999999888788899998742100 0
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEE-ecC
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII-SHD 315 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIii-SHd 315 (555)
. .++.+..|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|+|++ +|+
T Consensus 111 ------~-----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~ 179 (202)
T cd03233 111 ------K-----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQA 179 (202)
T ss_pred ------c-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 0 2456789999999999999999999999999999999999999999888753 25666655 566
Q ss_pred HHHHHhhcceeEEecCCeEe
Q 008750 316 RAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~ 335 (555)
.+.+..+||+|++|++|++.
T Consensus 180 ~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 180 SDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHhCCeEEEEECCEEE
Confidence 78998999999999999874
No 318
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.9e-39 Score=299.47 Aligned_cols=158 Identities=28% Similarity=0.465 Sum_probs=133.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.. ..+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~------------~~~ 68 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS------------FAS 68 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC------------cCC
Confidence 47899999998889999999999999999999999999999999999999999999999864221 001
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
..+.. -..+++ +
T Consensus 69 ~~~~~------------------------------------------------------------~~~i~~--------~ 80 (163)
T cd03216 69 PRDAR------------------------------------------------------------RAGIAM--------V 80 (163)
T ss_pred HHHHH------------------------------------------------------------hcCeEE--------E
Confidence 10000 000111 1
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+++++ .+.|+|++|||++++..+||++++|++|++
T Consensus 81 ~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160 (163)
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 23999999999999999999999999999999999999999988753 488999999999999999999999999986
Q ss_pred e
Q 008750 335 R 335 (555)
Q Consensus 335 ~ 335 (555)
.
T Consensus 161 ~ 161 (163)
T cd03216 161 V 161 (163)
T ss_pred E
Confidence 4
No 319
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.1e-39 Score=320.48 Aligned_cols=183 Identities=26% Similarity=0.395 Sum_probs=151.0
Q ss_pred EEeCC-ceeeeeeeEEEE-----CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccH
Q 008750 105 KSYKG-VTVLKDVTWEVK-----KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 105 ~~y~~-~~vL~~vsl~i~-----~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv 178 (555)
|+|++ ...++|++|++. +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|++|++...+..||
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--TVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--eEEEecccccCCCCCCH
Confidence 34532 346777777776 79999999999999999999999999999999999875 79999999887778899
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008750 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (555)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (555)
.+++...... .. .....+.++++.+|+. ...++++.
T Consensus 79 ~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~l~l~-~~~~~~~~ 114 (246)
T cd03237 79 RDLLSSITKD-----------------------------------------FY--THPYFKTEIAKPLQIE-QILDREVP 114 (246)
T ss_pred HHHHHHHhhh-----------------------------------------cc--ccHHHHHHHHHHcCCH-HHhhCChh
Confidence 9987421100 00 0011245567778886 45688899
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 259 ~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
+|||||||||+||+||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||+|++|+++.
T Consensus 115 ~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999999999999999999998887754 48999999999999999999999997653
No 320
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.8e-38 Score=319.13 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=158.2
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
+..+.|+++|+++. ++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+
T Consensus 35 ~~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---~i~yv~q~~~l 109 (282)
T cd03291 35 SDDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---RISFSSQFSWI 109 (282)
T ss_pred CCCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---EEEEEeCcccc
Confidence 34566999999985 46799999999999999999999999999999999999999999999986 59999999877
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-cc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-AD 251 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~ 251 (555)
+. .||.+|+....... . .... ..+. .. .+ ...+..+... ..
T Consensus 110 ~~-~tv~enl~~~~~~~-~--~~~~---~~l~------------------------~~---~l----~~~l~~~~~~~~~ 151 (282)
T cd03291 110 MP-GTIKENIIFGVSYD-E--YRYK---SVVK------------------------AC---QL----EEDITKFPEKDNT 151 (282)
T ss_pred cc-cCHHHHhhcccccC-H--HHHH---HHHH------------------------Hh---CC----HHHHHhccccccc
Confidence 54 59999986421100 0 0000 0000 00 00 1111111110 01
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH-Hc--CCCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LG--KQDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~-l~--~~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+. +. ..+.|||+||||++++. .||+|++
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~ 230 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILI 230 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEE
Confidence 23455679999999999999999999999999999999999999988764 32 24789999999999985 7999999
Q ss_pred ecCCeEeeccCChHHHH
Q 008750 329 TEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 329 l~~G~~~~~~G~y~~~~ 345 (555)
|++|++. +.|...++.
T Consensus 231 l~~G~i~-~~g~~~~~~ 246 (282)
T cd03291 231 LHEGSSY-FYGTFSELQ 246 (282)
T ss_pred EECCEEE-EECCHHHHH
Confidence 9999974 567766654
No 321
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.9e-39 Score=354.61 Aligned_cols=191 Identities=26% Similarity=0.380 Sum_probs=166.1
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
..++|+++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.++ ..++|++|++.+.
T Consensus 337 ~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~~i~y~~Q~~~~~ 412 (590)
T PRK13409 337 RETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKPQYIKPD 412 (590)
T ss_pred CceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---eeEEEecccccCC
Confidence 34679999999999775 5999999999999999999999999999999999999999999986 5799999998877
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..||.+++..... ... ....+.++++.+|+. ...
T Consensus 413 ~~~tv~e~l~~~~~-----------------------------------------~~~---~~~~~~~~L~~l~l~-~~~ 447 (590)
T PRK13409 413 YDGTVEDLLRSITD-----------------------------------------DLG---SSYYKSEIIKPLQLE-RLL 447 (590)
T ss_pred CCCcHHHHHHHHhh-----------------------------------------hcC---hHHHHHHHHHHCCCH-HHH
Confidence 88999998753210 000 012346678889996 567
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||||++|
T Consensus 448 ~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 448 DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999888754 4899999999999999999999999
Q ss_pred cCCeE
Q 008750 330 EMGVS 334 (555)
Q Consensus 330 ~~G~~ 334 (555)
++ +.
T Consensus 528 ~~-~~ 531 (590)
T PRK13409 528 EG-EP 531 (590)
T ss_pred cC-cc
Confidence 75 44
No 322
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-39 Score=352.18 Aligned_cols=206 Identities=19% Similarity=0.324 Sum_probs=167.2
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~i 163 (555)
+++|+++|+++.| +++|+||||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.+. .+
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 4579999999974 4699999999999999999999999999999999999999999999987432 28
Q ss_pred EEEecccc---cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEFE---VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~~---~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
+|++|++. ++...|+.+|..... +.. .... .........+..+.
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~---------------------~~~~~~~~~~~~~~ 372 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISN---IRN---------YKNK---------------------VGLLDNSRMKSDTQ 372 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhh---hhh---------hccc---------------------ccccCcHHHHHHHH
Confidence 99999853 556678777632100 000 0000 00001112345677
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~ 317 (555)
++++.+++.....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.+++ .+.|.|||+||||++
T Consensus 373 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred HHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 88899998644579999999999999999999999999999999999999999999998877 456999999999999
Q ss_pred HHHhhcceeEEecCCeEe
Q 008750 318 FLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~ 335 (555)
++..+||++++|++|++.
T Consensus 453 ~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 453 ELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHhhCCEEEEEECCEEE
Confidence 999999999999999975
No 323
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.2e-39 Score=309.25 Aligned_cols=172 Identities=26% Similarity=0.412 Sum_probs=142.3
Q ss_pred eCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eEEEEecccc-cC
Q 008750 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIAFLSQEFE-VS 173 (555)
Q Consensus 107 y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ig~v~Q~~~-~~ 173 (555)
|+++.+|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++. ..
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3566799999999999999999999999999999999999999999999987431 4899999974 33
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..|+.+|+...... . ........+++.++++.+|+. ...
T Consensus 82 ~~~tv~~nl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~ 121 (190)
T TIGR01166 82 FAADVDQDVAFGPLN---------------L------------------------GLSEAEVERRVREALTAVGAS-GLR 121 (190)
T ss_pred ccccHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCch-hhh
Confidence 567999987532100 0 001112234567788889986 457
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||+++
T Consensus 122 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 889999999999999999999999999999999999999999999988753 48899999999875
No 324
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=352.97 Aligned_cols=213 Identities=20% Similarity=0.311 Sum_probs=171.7
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
.+.++++|+++. .+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..+
T Consensus 255 ~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 255 EVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred CcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 346899999842 58999999999999999999999999999999999999999999998742 258
Q ss_pred EEEecccc---cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEFE---VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~~---~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
+|++|++. +++..|+.+|+........ .... . ..........+.
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~-------------~~~~----~----------------~~~~~~~~~~~~ 377 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHH-------------LRAG----C----------------LINNRWEAENAD 377 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhh-------------cccc----c----------------ccChHHHHHHHH
Confidence 99999974 6677899999753210000 0000 0 000011134567
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~ 317 (555)
++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++| .+.|.|||+||||++
T Consensus 378 ~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 457 (501)
T PRK11288 378 RFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP 457 (501)
T ss_pred HHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 88999999545679999999999999999999999999999999999999999999998876 456899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++..+||++++|++|++ .+.|..+++.
T Consensus 458 ~~~~~~d~i~~l~~g~i-~~~~~~~~~~ 484 (501)
T PRK11288 458 EVLGVADRIVVMREGRI-AGELAREQAT 484 (501)
T ss_pred HHHhhCCEEEEEECCEE-EEEEccccCC
Confidence 99999999999999986 4566555443
No 325
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.8e-38 Score=350.28 Aligned_cols=239 Identities=28% Similarity=0.396 Sum_probs=170.6
Q ss_pred HhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEE
Q 008750 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~ 126 (555)
+......+...+.+..+.+++++....+..... ..... ....+.|+++||+|+|++ +++|+|+||+|++|+++
T Consensus 277 l~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~ 351 (529)
T TIGR02857 277 LRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KAPVT--AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERV 351 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcCCC--CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEE
Confidence 344444455677777777777665432211110 00000 011235999999999975 46999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ |+.|++||+..+.... . .
T Consensus 352 ~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~l-f~~ti~~Ni~~~~~~~-~----~ 425 (529)
T TIGR02857 352 ALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFL-FAGTIAENIRLARPDA-S----D 425 (529)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcc-cCcCHHHHHhccCCCC-C----H
Confidence 99999999999999999999999999999998653 59999999987 5689999986532100 0 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+.+...++ . ..+...+.++-+ |++.. ......+||||||||++|||||+.
T Consensus 426 ~~i~~a~~------------------------~---~~l~~~i~~lp~--Gldt~-v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 426 AEIRRALE------------------------R---AGLDEFVAALPQ--GLDTL-IGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred HHHHHHHH------------------------H---cCcHHHHHhCcc--cccch-hccccccCCHHHHHHHHHHHHHhc
Confidence 00000000 0 011111111111 23221 223346899999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEe
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
+|++|||||||++||+.+.+.+.+.+.+ .++|+|+||||++.+. .||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999999999988865 5799999999999985 69999875
No 326
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-38 Score=383.35 Aligned_cols=257 Identities=21% Similarity=0.295 Sum_probs=185.3
Q ss_pred hhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-C-ceeeeeeeEEEECCCEEEEE
Q 008750 52 ATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-G-VTVLKDVTWEVKKGEKVGLV 129 (555)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~-~~vL~~vsl~i~~Ge~~~lv 129 (555)
....+.+.+.+..+++|+++....+.+..........+...+..+.|+++||+|+|+ + .++|+||||+|++||++|||
T Consensus 1189 l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIV 1268 (1495)
T PLN03232 1189 VLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVV 1268 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEE
Confidence 334445567777888887766543322111000000000012235699999999994 3 47999999999999999999
Q ss_pred cCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
|+||||||||+++|.|+++|++|+|.+||.+. +|+||||++.+ |+.|+++|+...- + .. .+++
T Consensus 1269 G~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~L-F~gTIr~NL~~~~-~-~s----deei 1341 (1495)
T PLN03232 1269 GRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVL-FSGTVRFNIDPFS-E-HN----DADL 1341 (1495)
T ss_pred CCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCee-eCccHHHHcCCCC-C-CC----HHHH
Confidence 99999999999999999999999999999753 59999999988 5679999985321 0 00 0011
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~ 279 (555)
.+.++. . .+...+..+- .|++... .....+||||||||++|||||+++|+
T Consensus 1342 ~~al~~------------------------a---~l~~~I~~lp--~GLdt~v-~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1342 WEALER------------------------A---HIKDVIDRNP--FGLDAEV-SEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred HHHHHH------------------------c---CCHHHHHhCc--CCCCcee-cCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 111110 0 1111122111 1444322 33346899999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 280 lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||||||||+||.++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|+++. .|++++.+..
T Consensus 1392 ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE-~Gt~~eLl~~ 1459 (1495)
T PLN03232 1392 ILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE-YDSPQELLSR 1459 (1495)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999998865 48999999999999986 99999999999865 5788776643
No 327
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.6e-38 Score=350.51 Aligned_cols=230 Identities=26% Similarity=0.359 Sum_probs=160.0
Q ss_pred hhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEE
Q 008750 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGL 128 (555)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~l 128 (555)
.....-+...+.+..+.+++.+....+.+.... ..+...........|+++||+|+|++ +++|+|+||+|++|+++||
T Consensus 288 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaI 366 (529)
T TIGR02868 288 APLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAI 366 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEE
Confidence 333334455666777777766654333211110 00000000112345999999999975 5699999999999999999
Q ss_pred EcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 129 VGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
||+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ |+.|++||+..+..+.. .+++
T Consensus 367 vG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~l-F~~TI~eNI~~g~~~~~-----~e~i 440 (529)
T TIGR02868 367 LGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHL-FDTTVRDNLRLGRPDAT-----DEEL 440 (529)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccc-ccccHHHHHhccCCCCC-----HHHH
Confidence 999999999999999999999999999998653 59999999988 78899999975421000 0001
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~ 279 (555)
.+.++. . .+.+.+..+-+ |++....+ .-..||||||||++|||||+.+|+
T Consensus 441 ~~al~~------------------------a---~l~~~i~~lp~--GldT~ige-~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 441 WAALER------------------------V---GLADWLRSLPD--GLDTVLGE-GGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred HHHHHH------------------------c---CCHHHHHhCcc--cccchhcc-ccCcCCHHHHHHHHHHHHHhcCCC
Confidence 111110 0 11111111111 33322222 235799999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCH
Q 008750 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (555)
Q Consensus 280 lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~ 316 (555)
|||||||||+||+++++.+.+.+.+ .++|+|+|||++
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999998865 479999999984
No 328
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-38 Score=382.36 Aligned_cols=251 Identities=22% Similarity=0.303 Sum_probs=181.4
Q ss_pred HHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCcc
Q 008750 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAG 135 (555)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsG 135 (555)
.+..++.+++|+.+....+.+.............-+..+.|+++||+|+|.+ .++|+||||+|++||++||||++|||
T Consensus 1198 ~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSG 1277 (1622)
T PLN03130 1198 LAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAG 1277 (1622)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCC
Confidence 4566777777776543322211100000000000123456999999999953 36999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 008750 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205 (555)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (555)
||||+++|.|+++|++|+|.+||.++ +|++|||++.+ |+.||++|+.... + . .-+++.+.++.
T Consensus 1278 KSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~L-F~GTIreNLd~~~-~-~----tdeei~~Al~~ 1350 (1622)
T PLN03130 1278 KSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVL-FSGTVRFNLDPFN-E-H----NDADLWESLER 1350 (1622)
T ss_pred HHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcc-ccccHHHHhCcCC-C-C----CHHHHHHHHHH
Confidence 99999999999999999999999753 59999999988 5779999985321 0 0 00011111110
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcC
Q 008750 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDE 285 (555)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDE 285 (555)
..+...+..+- .|++... .....+||||||||++|||||+++|+||||||
T Consensus 1351 ---------------------------a~l~~~I~~lp--~GLdt~V-ge~G~nLSgGQrQrlaLARALLr~p~ILILDE 1400 (1622)
T PLN03130 1351 ---------------------------AHLKDVIRRNS--LGLDAEV-SEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400 (1622)
T ss_pred ---------------------------cCcHHHHHhCc--cccCccc-cCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 01111122211 2444332 23345899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 286 PTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 286 PTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||+||.++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|++.. .|++.+.+..
T Consensus 1401 ATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE-~Gt~~eLl~~ 1462 (1622)
T PLN03130 1401 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVE-FDTPENLLSN 1462 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEE-eCCHHHHHhC
Confidence 9999999999999998865 48999999999999976 99999999999854 4777776643
No 329
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1e-38 Score=349.67 Aligned_cols=209 Identities=20% Similarity=0.334 Sum_probs=169.8
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
.+.|+++|+++ ++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 255 ~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 255 EVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred CcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 35799999985 37999999999999999999999999999999999999999999998743 248
Q ss_pred EEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
||++|++ .+++..||.+|+....... .... . ..........++.
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-------------~~~~------~--------------~~~~~~~~~~~~~ 376 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRY-------------FSRA------G--------------GSLKHADEQQAVS 376 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhh-------------hccc------c--------------cccCHHHHHHHHH
Confidence 9999996 4667789999985321000 0000 0 0000112234577
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++
T Consensus 377 ~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~ 456 (501)
T PRK10762 377 DFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP 456 (501)
T ss_pred HHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 8899999954467899999999999999999999999999999999999999999999888753 5889999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
++..+||+|++|++|++. +.|...
T Consensus 457 ~~~~~~d~v~~l~~G~i~-~~~~~~ 480 (501)
T PRK10762 457 EVLGMSDRILVMHEGRIS-GEFTRE 480 (501)
T ss_pred HHHhhCCEEEEEECCEEE-EEeccc
Confidence 999999999999999874 444433
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.3e-38 Score=289.77 Aligned_cols=144 Identities=51% Similarity=0.847 Sum_probs=133.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
|+++|+++.|++.++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-VKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-EEEEEEcc---------
Confidence 47899999998878999999999999999999999999999999999999999999999863 23444331
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
T Consensus 71 -------------------------------------------------------------------------------- 70 (144)
T cd03221 71 -------------------------------------------------------------------------------- 70 (144)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
||+||+||++|||||+.+|+++||||||++||+.++..+.+.+++.+.|+|++||+++++..+||++++|++|+
T Consensus 71 --lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 71 --LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 89999999999999999999999999999999999999999998878899999999999999999999999884
No 331
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1e-38 Score=348.90 Aligned_cols=208 Identities=24% Similarity=0.366 Sum_probs=166.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCC-----------ce
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN-----------MK 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~-----------~~ 162 (555)
.++|+++|+++.|+++.+|+|+||+|++||++||+|+||||||||+|+|+|+.+| ++|+|.++|.+ ..
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 4679999999999888899999999999999999999999999999999998876 79999998742 24
Q ss_pred EEEEecccccCcC--ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 163 IAFLSQEFEVSMS--RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 163 ig~v~Q~~~~~~~--~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
|+|++|++.+++. .++.+++...+... . ... .........++.
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~---------------------~~~~~~~~~~~~ 382 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDS-------------I-GIY---------------------QAVSDRQQKLAQ 382 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccc-------------c-ccc---------------------cCCCHHHHHHHH
Confidence 8999998765432 45655543211000 0 000 000011234677
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CC-ceEEEEecCH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD-VPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~-~tvIiiSHd~ 316 (555)
++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+ .|||+||||+
T Consensus 383 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~ 462 (490)
T PRK10938 383 QWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA 462 (490)
T ss_pred HHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence 8899999975367899999999999999999999999999999999999999999999988753 34 5799999999
Q ss_pred HHHHh-hcceeEEecCCeEeec
Q 008750 317 AFLDQ-LCTKIVETEMGVSRTY 337 (555)
Q Consensus 317 ~~l~~-~~dri~~l~~G~~~~~ 337 (555)
+++.. +||++++|++|+++.+
T Consensus 463 ~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 463 EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred hhhhhhhheeEEEecCCceEEe
Confidence 99987 5999999999997654
No 332
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-40 Score=300.85 Aligned_cols=211 Identities=28% Similarity=0.375 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++||+++|+++.+++++|++|++|.+++|||||||||||||.+++.++++++|+|.++|.+. +++.+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999998653 47888
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
-|+......+||++-+.++-.+. + +.-...+-...++++++.+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPY---------------S----------------------qGRlt~eD~~~I~~aieyl 123 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPY---------------S----------------------QGRLTKEDRRIINEAIEYL 123 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcc---------------c----------------------CCCCchHHHHHHHHHHHHh
Confidence 88888878889998775431100 0 0001122244577788888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~ 322 (555)
+|. +..+|+..+||||||||..||.+|+++.+.++||||.|+||......+.+.|+ +.|+|+|+|-||++|+..+
T Consensus 124 ~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y 202 (252)
T COG4604 124 HLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY 202 (252)
T ss_pred ccc-chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh
Confidence 886 56799999999999999999999999999999999999999987666666554 5799999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|+|+-|++|++ +..|..++...
T Consensus 203 sD~IVAlK~G~v-v~~G~~~eii~ 225 (252)
T COG4604 203 SDHIVALKNGKV-VKQGSPDEIIQ 225 (252)
T ss_pred hhheeeecCCEE-EecCCHHHhcC
Confidence 999999999996 67888776654
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-38 Score=349.65 Aligned_cols=206 Identities=18% Similarity=0.308 Sum_probs=168.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
+++|+++|+++ .+|+||||+|++|+++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 45799999984 26999999999999999999999999999999999999999999998742 258
Q ss_pred EEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
+|++|++ .+++..|+.+|+........ .. ..........+.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~-------------~~-----------------------~~~~~~~~~~~~ 384 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRR-------------GF-----------------------WIKPARENAVLE 384 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhh-------------cc-----------------------ccChHHHHHHHH
Confidence 9999985 36667899888742100000 00 000011234577
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|++ .|.|||+||||++
T Consensus 385 ~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 385 RYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred HHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 8899999963467899999999999999999999999999999999999999999999988753 5899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
++.++||+|++|++|++. +.|..+
T Consensus 465 ~i~~~~d~i~~l~~G~i~-~~~~~~ 488 (510)
T PRK15439 465 EIEQMADRVLVMHQGEIS-GALTGA 488 (510)
T ss_pred HHHHhCCEEEEEECCEEE-EEEccc
Confidence 999999999999999874 445443
No 334
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-39 Score=306.94 Aligned_cols=208 Identities=31% Similarity=0.426 Sum_probs=171.0
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------c
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------M 161 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~ 161 (555)
..++.|+++||++.|+++++|+||||+|++||.|+|+|+|||||||||++++|.++|++|.+.+.|.. .
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 34577999999999999999999999999999999999999999999999999999999999877642 2
Q ss_pred eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 ~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
+||||+-... +..+.+|+|.+..++.....++ +..-......++
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y----------------------------------~~~~~~~~~~~a 152 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIY----------------------------------QEDLTAEDLAAA 152 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeeccccccccc----------------------------------ccCCCHHHHHHH
Confidence 5899885532 3345677777665542111000 000011234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-----CCceEEEEec
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~-----~~~tvIiiSH 314 (555)
..+++.+|+.+ ..++++.+||-||||||.|||||+.+|.+|||||||++||...++.|.+.|.+ .+.++|+|||
T Consensus 153 ~~lle~~g~~~-la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtH 231 (257)
T COG1119 153 QWLLELLGAKH-LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231 (257)
T ss_pred HHHHHHcchhh-hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 88899999974 78999999999999999999999999999999999999999999888887753 3678999999
Q ss_pred CHHHHHhhcceeEEecCCeEe
Q 008750 315 DRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~ 335 (555)
..+++....++++.+.+|+++
T Consensus 232 h~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 232 HAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred chhhcccccceEEEeeCCcee
Confidence 999999999999999999863
No 335
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-39 Score=291.43 Aligned_cols=195 Identities=22% Similarity=0.367 Sum_probs=169.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEe
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLS 167 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~ 167 (555)
++++++.+.-++.++|+++||++.+||+++|+||+|||||||+|+++.+++|++|++.|.|.+. .|+|+.
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~ 83 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA 83 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence 5667776666788999999999999999999999999999999999999999999999999764 589999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|.|.+ |..||.+|+..+..- .+ ..--...+..+|..++
T Consensus 84 Q~paL-fg~tVeDNlifP~~~---------------r~--------------------------rr~dr~aa~~llar~~ 121 (223)
T COG4619 84 QTPAL-FGDTVEDNLIFPWQI---------------RN--------------------------RRPDRAAALDLLARFA 121 (223)
T ss_pred cCccc-cccchhhccccchHH---------------hc--------------------------cCCChHHHHHHHHHcC
Confidence 99988 678999998654310 00 1112345677889999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~ 323 (555)
+++..+++.+.+|||||+||++|+|-|..-|+|||||||||+||+.+.+.+.+++ +.....++.||||....-+.+
T Consensus 122 l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha 201 (223)
T COG4619 122 LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHA 201 (223)
T ss_pred CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhh
Confidence 9999999999999999999999999999999999999999999999988887766 456899999999999988899
Q ss_pred ceeEEecCCeE
Q 008750 324 TKIVETEMGVS 334 (555)
Q Consensus 324 dri~~l~~G~~ 334 (555)
|++|-+..|+.
T Consensus 202 ~k~itl~~G~~ 212 (223)
T COG4619 202 DKVITLQPGHA 212 (223)
T ss_pred heEEEeccCcc
Confidence 99999999875
No 336
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8.1e-38 Score=346.34 Aligned_cols=239 Identities=19% Similarity=0.265 Sum_probs=172.8
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccC---cchhhhhhcccccCC--CCCCCCCccEEEEeEEEEeCCc-----eeeeee
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSS---ADEFENKKYSNKQSN--TGASSISSGVKLENISKSYKGV-----TVLKDV 116 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~i~l~nls~~y~~~-----~vL~~v 116 (555)
.++......+...+.+..+.+++.+.. .++............ .........|+++||+|+|++. ++|+|+
T Consensus 282 ~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~v 361 (555)
T TIGR01194 282 GPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPI 361 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccc
Confidence 355556666667788888888877763 221110000000000 0000123459999999999752 599999
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF 186 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~ 186 (555)
||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++||+|++.+ |+.|+++|.....
T Consensus 362 s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l-f~~ti~~n~~~~~ 440 (555)
T TIGR01194 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHL-FDDLIGPDEGEHA 440 (555)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhh-hhhhhhcccccch
Confidence 999999999999999999999999999999999999999998643 48999999876 5667777631000
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc-----cCCCCCCCC
Q 008750 187 KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-----GDRLVASFS 261 (555)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-----~~~~~~~LS 261 (555)
.++++.++++.+++.... .......||
T Consensus 441 ------------------------------------------------~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 441 ------------------------------------------------SLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred ------------------------------------------------hHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 011122233333332110 011136899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 262 GGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
||||||++|||||+.+|++|||||||++||+.+++.+.+.+ +..++|+|+|||+++.+. .||+|++|++|++.
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999887643 245899999999999875 79999999999875
No 337
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.3e-38 Score=376.87 Aligned_cols=208 Identities=26% Similarity=0.411 Sum_probs=178.9
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eE
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~i 163 (555)
..+|+++||+|.|++ +.+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 456999999999975 5799999999999999999999999999999999999999999999998542 49
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
||+||++.+++.+|++|++..... +. .+...+.++.+.+++
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~---------------l~------------------------g~~~~~~~~~v~~lL 2055 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYAR---------------LR------------------------GVPAEEIEKVANWSI 2055 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHH---------------hc------------------------CCCHHHHHHHHHHHH
Confidence 999999988888999998753110 00 011122345677889
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+||. ...++++.+|||||||||+||+||+.+|+||||||||+|||+.+++.+++.|+ +.|+|||++||+++++.
T Consensus 2056 e~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e 2134 (2272)
T TIGR01257 2056 QSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE 2134 (2272)
T ss_pred HHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999996 46799999999999999999999999999999999999999999999999874 35899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
.+||||++|++|++. +.|+..+
T Consensus 2135 ~lcDrV~IL~~G~i~-~~Gs~q~ 2156 (2272)
T TIGR01257 2135 ALCTRLAIMVKGAFQ-CLGTIQH 2156 (2272)
T ss_pred HhCCEEEEEECCEEE-EECCHHH
Confidence 999999999999874 5676543
No 338
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9.8e-38 Score=377.86 Aligned_cols=260 Identities=23% Similarity=0.275 Sum_probs=187.2
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+.....++.+++|+.+....+.+..........+..-+..+.|+++||+|+|+. .++|+||||+|++||+
T Consensus 1235 ~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~Gek 1314 (1522)
T TIGR00957 1235 YLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEK 1314 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCE
Confidence 34444455566777888888877765433221100000000000123456999999999964 4699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||++|||||||+++|.|+++|++|+|.+||.++ +|+||||++.+ |+.|+++|+.. +.+ ..
T Consensus 1315 iaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~L-F~gTIr~NLdp-~~~-~s---- 1387 (1522)
T TIGR00957 1315 VGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVL-FSGSLRMNLDP-FSQ-YS---- 1387 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcc-cCccHHHHcCc-ccC-CC----
Confidence 999999999999999999999999999999999753 59999999988 56799999841 100 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
-+++...++ .. .+...+..+- -|++... .....+||||||||++|||||+
T Consensus 1388 deei~~al~------------------------~a---~l~~~I~~lp--~GLdt~v-~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957 1388 DEEVWWALE------------------------LA---HLKTFVSALP--DKLDHEC-AEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred HHHHHHHHH------------------------Hc---CcHHHHhhCc--cCCCcee-cCCCCcCCHHHHHHHHHHHHHH
Confidence 000111111 00 1111122211 1444332 2234579999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++|+|||||||||+||.++...+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|+++. .|++.+.+.
T Consensus 1438 r~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE-~G~~~eLl~ 1508 (1522)
T TIGR00957 1438 RKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAE-FGAPSNLLQ 1508 (1522)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999865 48999999999999975 89999999999865 477766654
No 339
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.2e-37 Score=350.30 Aligned_cols=244 Identities=16% Similarity=0.275 Sum_probs=180.1
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhc----ccccC-------------C--CC-CCCCCccEEEEeEEEE
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKY----SNKQS-------------N--TG-ASSISSGVKLENISKS 106 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------~--~~-~~~~~~~i~l~nls~~ 106 (555)
..+......+..++++.+..+|+++..+.+.+.... ...+. . .. .......|+++||++.
T Consensus 381 ~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~ 460 (659)
T TIGR00954 381 DALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLV 460 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEE
Confidence 344555556677888888888887776443221100 00000 0 00 0012356999999999
Q ss_pred eC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHh
Q 008750 107 YK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (555)
Q Consensus 107 y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~ 185 (555)
|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++ ...++|++|++.++.. |++||+..+
T Consensus 461 ~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-~~~i~~v~Q~~~l~~~-tv~eni~~~ 538 (659)
T TIGR00954 461 TPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-KGKLFYVPQRPYMTLG-TLRDQIIYP 538 (659)
T ss_pred CCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-CCcEEEECCCCCCCCc-CHHHHHhcC
Confidence 95 56799999999999999999999999999999999999999999999875 3479999999987554 999998643
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC---------C
Q 008750 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR---------L 256 (555)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~---------~ 256 (555)
.... . .. .....++++.++++.+|+.. ..++ .
T Consensus 539 ~~~~-~-----------~~--------------------------~~~~~~~~i~~~l~~~~l~~-~~~~~~g~~~~~~~ 579 (659)
T TIGR00954 539 DSSE-D-----------MK--------------------------RRGLSDKDLEQILDNVQLTH-ILEREGGWSAVQDW 579 (659)
T ss_pred CChh-h-----------hh--------------------------ccCCCHHHHHHHHHHcCCHH-HHhhcCCccccccc
Confidence 2100 0 00 00001123344444455432 1122 2
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
..+||||||||++|||||+.+|++|||||||++||+.+++++.+.+++.+.|+|+||||++++ ..||+|++|+.+
T Consensus 580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~~~ 654 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMDGR 654 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEeCC
Confidence 478999999999999999999999999999999999999999999988899999999999998 579999999743
No 340
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=320.67 Aligned_cols=243 Identities=24% Similarity=0.371 Sum_probs=175.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
++-.+...|++...++.+-.|+-+.-.+.+.... . ...+.....+.++++++.=++ ++++++|||++.+||.
T Consensus 291 Pid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~-----~-m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~ 364 (580)
T COG4618 291 PIDLAIANWKQFVAARQSYKRLNELLAELPAAAE-----R-MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEA 364 (580)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-----C-CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCce
Confidence 4444555555655555555444333222221111 1 111133456999999986654 5799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEEecccccCcCccHHHHHHHhhHH----HHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKE----EME 191 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~----~~~ 191 (555)
+|||||||||||||.|+|.|..+|.+|.|.+||.+ ..|||+||+..+ |..||.||+.-.-++ ..-
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL-F~GTIaeNIaRf~~~~d~~kIi 443 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL-FDGTIAENIARFGEEADPEKVI 443 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccccee-cCCcHHHHHHhccccCCHHHHH
Confidence 99999999999999999999999999999999854 369999999988 778999999643211 000
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHH
Q 008750 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (555)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lA 271 (555)
.++++.. ..+-+..+- .|++....+ .-..||||||||++||
T Consensus 444 eAA~lAg------------------------------------vHelIl~lP--~GYdT~iG~-~G~~LSgGQRQRIaLA 484 (580)
T COG4618 444 EAARLAG------------------------------------VHELILRLP--QGYDTRIGE-GGATLSGGQRQRIALA 484 (580)
T ss_pred HHHHHcC------------------------------------hHHHHHhCc--CCccCccCC-CCCCCCchHHHHHHHH
Confidence 0111111 111111111 133332222 2358999999999999
Q ss_pred HHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHHhhcceeEEecCCeEeec
Q 008750 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~ 337 (555)
|||..+|.+++||||-++||.+.+..|.+.+ ++.|+|+|+|||+++.+. .+|+|++|++|.+..|
T Consensus 485 RAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~F 552 (580)
T COG4618 485 RALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAF 552 (580)
T ss_pred HHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhc
Confidence 9999999999999999999999999999876 568999999999999996 6999999999987544
No 341
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-38 Score=322.86 Aligned_cols=247 Identities=23% Similarity=0.355 Sum_probs=194.3
Q ss_pred hHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCC
Q 008750 55 EKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNG 133 (555)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NG 133 (555)
-++.+|...-+.|.+|+...++++..+.+..++.. ...+.|+++||+|.| +++++|+||||++.+|+++|||||+|
T Consensus 498 ~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~---~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SG 574 (790)
T KOG0056|consen 498 YYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLK---VTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSG 574 (790)
T ss_pred HHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCcc---ccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCC
Confidence 34678999999999999999888777655554432 345679999999999 57899999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh----HHHHHHHHHHHHH
Q 008750 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEIAGKLERV 199 (555)
Q Consensus 134 sGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~~~~~~~~ 199 (555)
+||||++|+|..+++.++|.|.+||+++ .||.||||..+ |+.|+..|+..+- .++...+++.+.+
T Consensus 575 aGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL-FNdTI~yNIryak~~AsneevyaAAkAA~I 653 (790)
T KOG0056|consen 575 AGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL-FNDTILYNIRYAKPSASNEEVYAAAKAAQI 653 (790)
T ss_pred CchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee-ecceeeeheeecCCCCChHHHHHHHHHhhH
Confidence 9999999999999999999999999875 59999999877 7889988885431 2222222222222
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~ 279 (555)
+..+-. .++.++....+=|+ .|||||||||||||+++..|.
T Consensus 654 HdrIl~-----------------------------fPegY~t~VGERGL----------kLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 654 HDRILQ-----------------------------FPEGYNTRVGERGL----------KLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred HHHHhc-----------------------------Cchhhhhhhhhccc----------ccCCcchhhHHHHHHHhcCCc
Confidence 221110 01112222222222 699999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 280 lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+++|||.||+||..+++.+...|.+ .+.|-|+|.|+++.+-. ||.|+++++|.+. ..|+..+...
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~Iv-ErG~HeeLl~ 761 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIV-ERGRHEELLK 761 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEe-ecCcHHHHHh
Confidence 9999999999999999999988875 58899999999999975 9999999999874 4676665554
No 342
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.2e-37 Score=304.13 Aligned_cols=191 Identities=31% Similarity=0.399 Sum_probs=154.2
Q ss_pred EEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEecccccC--cCccHHHHHHHhhHHHH
Q 008750 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS--MSRTVREEFMSAFKEEM 190 (555)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~~~~~--~~~tv~e~~~~~~~~~~ 190 (555)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.++ +..|+.+|+........
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999864 3599999998663 34789988753210000
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~l 270 (555)
. .. .........++.++++.+|+. ...++++.+||||||||++|
T Consensus 81 ~----------~~-------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 124 (223)
T TIGR03771 81 G----------WL-------------------------RRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLV 124 (223)
T ss_pred c----------cc-------------------------cCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHH
Confidence 0 00 000011234567788889986 45688899999999999999
Q ss_pred HHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 271 AraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||++++..+||+|+++ +|++. +.|+.+++..
T Consensus 125 aral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~~ 201 (223)
T TIGR03771 125 ARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQD 201 (223)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhcC
Confidence 9999999999999999999999999999988753 5889999999999999999999999 78764 6677766543
No 343
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.3e-37 Score=371.65 Aligned_cols=212 Identities=24% Similarity=0.339 Sum_probs=164.9
Q ss_pred ccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
+.|+++||+|+|++ .++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.++|.++ .|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 46999999999954 3599999999999999999999999999999999999999999999999753 59
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+||||++.+ |+.||++|+.. +.+ .. -+++..+++. . .+...+..+-
T Consensus 1387 ~iVpQdp~L-F~gTIreNIdp-~~~-~s----deeI~~Al~~------------------------a---~l~~~I~~lp 1432 (1560)
T PTZ00243 1387 SMIPQDPVL-FDGTVRQNVDP-FLE-AS----SAEVWAALEL------------------------V---GLRERVASES 1432 (1560)
T ss_pred eEECCCCcc-ccccHHHHhCc-ccC-CC----HHHHHHHHHH------------------------C---CChHHHhhCc
Confidence 999999987 67799999842 110 00 0111111111 0 1111122111
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccC-CCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~-p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~ 320 (555)
-|++... ...-.+||||||||++|||||+.+ |+|||||||||+||.++.+.+.+.|++ .++|+|+|+|+++.+.
T Consensus 1433 --~Gldt~v-ge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1433 --EGIDSRV-LEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred --ccccccc-cCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 1333222 223358999999999999999995 899999999999999999999998864 4799999999999997
Q ss_pred hhcceeEEecCCeEeeccCChHHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
. ||+|++|++|++.. .|++++.+.
T Consensus 1510 ~-~DrIlVLd~G~VvE-~Gt~~eLl~ 1533 (1560)
T PTZ00243 1510 Q-YDKIIVMDHGAVAE-MGSPRELVM 1533 (1560)
T ss_pred h-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 5 99999999999754 577777654
No 344
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.7e-37 Score=347.64 Aligned_cols=209 Identities=25% Similarity=0.365 Sum_probs=172.1
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC--ceEEEEcCCC------ceEEEEeccc
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--SGNVIKAKSN------MKIAFLSQEF 170 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~--~G~I~~~g~~------~~ig~v~Q~~ 170 (555)
.++|++++|+++.+|+||||+|++||++||+|+||||||||+++|+|..+|+ +|+|.++|.+ ..+|||+|++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccc
Confidence 4678899998889999999999999999999999999999999999999885 8999999854 2599999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++.+||+|++..... +. ... .....+..++++++++.+|+.+
T Consensus 150 ~l~~~lTV~E~l~~~a~---------------~~-~~~--------------------~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 150 ILYPHLTVRETLVFCSL---------------LR-LPK--------------------SLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred ccCCcCCHHHHHHHHHH---------------hC-CCC--------------------CCCHHHHHHHHHHHHHHcCChh
Confidence 88888999999853210 00 000 0011123456788899999964
Q ss_pred cc----cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH-HHHhh
Q 008750 251 DD----GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLDQL 322 (555)
Q Consensus 251 ~~----~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~-~l~~~ 322 (555)
.. .++.+..|||||||||+||++|+.+|+||||||||+|||..+...+.+.|++ .|+|||++||+++ .+.++
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~ 273 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Confidence 21 2456788999999999999999999999999999999999999999988753 6899999999998 58889
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||+|++|++|++ .|.|+.++.
T Consensus 274 ~D~iilL~~G~i-v~~G~~~~~ 294 (659)
T PLN03211 274 FDSVLVLSEGRC-LFFGKGSDA 294 (659)
T ss_pred hceEEEecCCcE-EEECCHHHH
Confidence 999999999986 567776544
No 345
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=7.1e-37 Score=298.28 Aligned_cols=187 Identities=18% Similarity=0.195 Sum_probs=145.7
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-EcCCCceEEEEecccccCcCccHHHHHHHhhHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (555)
.+|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|. +++.... +.+.+.+++.+|+.+|+......
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---~~~~~~l~~~ltv~enl~~~~~~- 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---LGANSFILPGLTGEENARMMASL- 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---cccccccCCcCcHHHHHHHHHHH-
Confidence 379999999999999999999999999999999999999999997 7764332 33456676788999998532100
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (555)
.. ....+. ...+...++++ ...++++..||||||||++
T Consensus 77 --------------~~------------------------~~~~~~---~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~ 114 (213)
T PRK15177 77 --------------YG------------------------LDGDEF---SHFCYQLTQLE-QCYTDRVSEYSVTMKTHLA 114 (213)
T ss_pred --------------cC------------------------CCHHHH---HHHHHHHhChh-HHhhchHhhcCHHHHHHHH
Confidence 00 000000 11112234554 3457888999999999999
Q ss_pred HHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 270 lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||||+.+|+++||||||++||+.+...+.+.+.+ .+.|+|++|||+.++..+||+|++|++|++. +.|+..+.
T Consensus 115 la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 190 (213)
T PRK15177 115 FAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQA 190 (213)
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHHH
Confidence 99999999999999999999999998888886632 3578999999999999999999999999974 56665443
No 346
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=286.05 Aligned_cols=216 Identities=29% Similarity=0.435 Sum_probs=182.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC-CC-----------ceE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK-SN-----------MKI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g-~~-----------~~i 163 (555)
+.++++||+++|++..+|+|+||+|.+||.-+||||||+||||++.+|+|..+|+.|+|.++| .+ ..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 568999999999999999999999999999999999999999999999999999999999998 32 258
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|--+|.|..+.+.||+||+..+....-.+.+. +.. . -..+-+.+++++|
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~---------------------------L~~---r-~~~~e~~ride~L 132 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFAS---------------------------LFA---R-LRAEERRRIDELL 132 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHH---------------------------hhh---h-cChhHHHHHHHHH
Confidence 99999999999999999986543211111100 000 0 1123356899999
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
...||. +..++....||-||||++.|+..|+++|++||||||++|+-.+......++|++ .+.+|++|.||+.|+..
T Consensus 133 a~igL~-~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~ 211 (249)
T COG4674 133 ATIGLG-DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVRE 211 (249)
T ss_pred HHcccc-hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHH
Confidence 999996 567888999999999999999999999999999999999998887777777764 46799999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+|++|.+|+.|.+ ...|+.++.
T Consensus 212 ~A~~VTVlh~G~V-L~EGsld~v 233 (249)
T COG4674 212 IADKVTVLHEGSV-LAEGSLDEV 233 (249)
T ss_pred hhheeEEEeccce-eecccHHHh
Confidence 9999999999975 678887754
No 347
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-38 Score=302.07 Aligned_cols=190 Identities=27% Similarity=0.438 Sum_probs=160.4
Q ss_pred EEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEEEec
Q 008750 103 ISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQ 168 (555)
Q Consensus 103 ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~v~Q 168 (555)
+.+++|+. +| +++|+++.-.++||.|+||||||||+++|+|+.+|+.|.|.++|.. .+||||||
T Consensus 6 ~~~~lG~~-~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 6 FRQRLGNF-AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred hhhhcCce-EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 34444443 34 6899998867999999999999999999999999999999998742 26999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
|..+|+++||+-|+..+... .....++++.+.+|+
T Consensus 84 DARLFpH~tVrgNL~YG~~~---------------------------------------------~~~~~fd~iv~lLGI 118 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWK---------------------------------------------SMRAQFDQLVALLGI 118 (352)
T ss_pred ccccccceEEecchhhhhcc---------------------------------------------cchHhHHHHHHHhCc
Confidence 99999999999998643210 012345667788898
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. .+++|+|.+|||||||||+|+|||+..|++||||||.++||..-+..+.-+|. +.+..|+.|||-++++.++||
T Consensus 119 ~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd 197 (352)
T COG4148 119 E-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLAD 197 (352)
T ss_pred H-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhh
Confidence 6 57799999999999999999999999999999999999999998888877764 468999999999999999999
Q ss_pred eeEEecCCeEeeccCCh
Q 008750 325 KIVETEMGVSRTYEGNY 341 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y 341 (555)
+|++|++|++.. .|..
T Consensus 198 ~vV~le~GkV~A-~g~~ 213 (352)
T COG4148 198 RVVVLENGKVKA-SGPL 213 (352)
T ss_pred eEEEecCCeEEe-cCcH
Confidence 999999999754 4443
No 348
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.1e-37 Score=305.33 Aligned_cols=184 Identities=25% Similarity=0.352 Sum_probs=150.0
Q ss_pred EeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCCCc-------
Q 008750 101 ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSNM------- 161 (555)
Q Consensus 101 ~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-----------~~g~~~------- 161 (555)
.||+|+|++. .+|+|+|+ |.+|++++|+|+||||||||+++|+|+++|++|+|. ++|.+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999765 59999995 999999999999999999999999999999999995 555321
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++..++ .++.+++.... .....+
T Consensus 83 ~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l--------------------------------------------~~~~~~ 117 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIP-KAVKGKVGELL--------------------------------------------KKKDER 117 (255)
T ss_pred hhcccceeeecchhccCc-hHHHHHHHHHh--------------------------------------------chhHHH
Confidence 3677888766544 35555443210 001123
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
..+.++++.+|+.. ..++.+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.++ +.+.|||+||
T Consensus 118 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiS 196 (255)
T cd03236 118 GKLDELVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVE 196 (255)
T ss_pred HHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45677888889863 4678899999999999999999999999999999999999999988887765 3589999999
Q ss_pred cCHHHHHhhcceeEEecC
Q 008750 314 HDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~ 331 (555)
||++++..+||+|++|++
T Consensus 197 Hd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 197 HDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred CCHHHHHHhCCEEEEECC
Confidence 999999999999999964
No 349
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.5e-36 Score=363.37 Aligned_cols=212 Identities=22% Similarity=0.360 Sum_probs=163.8
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
.+.|+++||+++|+. .++|+||||+|++||++||||+||||||||+++|+|+++ ++|+|.++|.++ +
T Consensus 1215 ~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred CCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhc
Confidence 356999999999953 679999999999999999999999999999999999997 799999999653 5
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|+||||+|.+ |..||++|+.. +.. . .-+.+...++. . .+...+..+
T Consensus 1294 is~IpQdp~L-F~GTIR~NLdp-~~~-~----tdeei~~aL~~------------------------~---~L~~~i~~l 1339 (1490)
T TIGR01271 1294 FGVIPQKVFI-FSGTFRKNLDP-YEQ-W----SDEEIWKVAEE------------------------V---GLKSVIEQF 1339 (1490)
T ss_pred eEEEeCCCcc-CccCHHHHhCc-ccC-C----CHHHHHHHHHH------------------------C---CCHHHHHhC
Confidence 9999999988 56799999832 110 0 00011111110 0 111111111
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~ 320 (555)
-+ |++... ...-..||||||||++|||||+.+|+||||||||++||..+...+.+.|++ .++|||+|||+++.+.
T Consensus 1340 p~--GLdt~v-~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~ 1416 (1490)
T TIGR01271 1340 PD--KLDFVL-VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL 1416 (1490)
T ss_pred cc--cccccc-ccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 11 332222 122347999999999999999999999999999999999999999998865 4799999999999997
Q ss_pred hhcceeEEecCCeEeeccCChHHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
. ||+|++|++|++..+ |++.+.+.
T Consensus 1417 ~-~DrIlvL~~G~ivE~-g~p~~Ll~ 1440 (1490)
T TIGR01271 1417 E-CQQFLVIEGSSVKQY-DSIQKLLN 1440 (1490)
T ss_pred h-CCEEEEEECCEEEEe-CCHHHHHc
Confidence 5 999999999998654 67766653
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-36 Score=286.31 Aligned_cols=142 Identities=30% Similarity=0.408 Sum_probs=128.4
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHH
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e 180 (555)
.||+++|+++.+++++ |+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. .++|++|++
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--~i~~~~q~~---------- 70 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI--TPVYKPQYI---------- 70 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE--EEEEEcccC----------
Confidence 5899999998999985 999999999999999999999999999999999999999864 467776531
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008750 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (555)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (555)
.|
T Consensus 71 ------------------------------------------------------------------------------~L 72 (177)
T cd03222 71 ------------------------------------------------------------------------------DL 72 (177)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 19
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 261 SGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
|||||||++|||||+.+|+++||||||++||+.+++.+.+.+.+ . +.|||+||||++++..+||+|++|+++.
T Consensus 73 SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~ 149 (177)
T cd03222 73 SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEP 149 (177)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999999999999999999988887743 3 4899999999999999999999998764
No 351
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=336.28 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=173.0
Q ss_pred ccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
++|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 46999999999953 469999999999999999999999999999999999999999999999853
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++..|+.||+..... .. .....+.++
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------------~~------------------------~~~~~~~~~ 123 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAV---------------YA------------------------GLERKQRLL 123 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHH---------------Hc------------------------CCCHHHHHH
Confidence 248999999988888899998753110 00 001112345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEec
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSH 314 (555)
++.++++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+++++ .+.|+|+|||
T Consensus 124 ~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH 202 (648)
T PRK10535 124 RAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202 (648)
T ss_pred HHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 677888999997 457889999999999999999999999999999999999999999999888753 5899999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
+++++. .||++++|++|++. ..|..+
T Consensus 203 ~~~~~~-~~d~i~~l~~G~i~-~~g~~~ 228 (648)
T PRK10535 203 DPQVAA-QAERVIEIRDGEIV-RNPPAQ 228 (648)
T ss_pred CHHHHH-hCCEEEEEECCEEE-eecCcc
Confidence 999886 69999999999975 444433
No 352
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.5e-36 Score=314.03 Aligned_cols=177 Identities=27% Similarity=0.400 Sum_probs=148.8
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.+++.+||.+|+......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~----------- 69 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM----------- 69 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh-----------
Confidence 6899999999999999999999999999988532 599999999888889999998643110
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~ 279 (555)
......+...++.++++.+|+. ...++++.+|||||||||+|||||+.+|+
T Consensus 70 ----------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~ 120 (325)
T TIGR01187 70 ----------------------------RKVPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPK 120 (325)
T ss_pred ----------------------------cCCCHHHHHHHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 0001112345677889999996 46789999999999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 280 LLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 280 lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|||||||++||+.++..+.+.|++ .|.|+|+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~-~~g~~~~~~ 189 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIA-QIGTPEEIY 189 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999999887743 4899999999999999999999999999974 557666543
No 353
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=293.03 Aligned_cols=195 Identities=25% Similarity=0.423 Sum_probs=153.3
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe-cccccCcCccHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS-QEFEVSMSRTVRE 180 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~-Q~~~~~~~~tv~e 180 (555)
++++||||+|++|+++|+||+|||||||++|+|+|++.|++|.|.++|... ++++|. |...+.....+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 589999999999999999999999999999999999999999999986421 111111 1111111111111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008750 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (555)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (555)
-+ .+......++.+...++.+.+.+-++++ ...+.+++.|
T Consensus 118 s~---------------------------------------~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~L 157 (325)
T COG4586 118 SL---------------------------------------EVLKLIYEIPDDEFAERLDFLTEILDLE-GFLKWPVRKL 157 (325)
T ss_pred hH---------------------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhhc
Confidence 00 0111122345555667777788888886 4567889999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCCeEee
Q 008750 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 261 SGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
|-|||+|+.||.+|+++|+||+|||||-+||+.++..+.++|++ ++.||+++||+++.+..+||||++|+.|++ +
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gql-v 236 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL-V 236 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcE-e
Confidence 99999999999999999999999999999999999999888864 689999999999999999999999999996 7
Q ss_pred ccCChHHHHH
Q 008750 337 YEGNYSQYVL 346 (555)
Q Consensus 337 ~~G~y~~~~~ 346 (555)
|+|+..++.+
T Consensus 237 ~dg~l~~l~~ 246 (325)
T COG4586 237 FDGTLAQLQE 246 (325)
T ss_pred ecccHHHHHH
Confidence 9998877654
No 354
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.6e-36 Score=271.27 Aligned_cols=212 Identities=20% Similarity=0.404 Sum_probs=172.3
Q ss_pred CccEEEEeEEEEeCC---------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----
Q 008750 95 SSGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~---------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----- 160 (555)
++.++++|+++.|.. ..+++.|||++++|+.+||||.||||||||.|+|+|+++|++|+|.++|..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD 81 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccc
Confidence 356899999999842 248999999999999999999999999999999999999999999999864
Q ss_pred -----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 161 -----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
..|-+++|+|+-.++. +.++ +.+++.+..+. -.+.....
T Consensus 82 y~~R~k~IRMiFQDpnts~NP--Rl~i-------------------------------GqiLd~PL~l~---T~~~~~~R 125 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNP--RLRI-------------------------------GQILDFPLRLN---TDLEPEQR 125 (267)
T ss_pred hHhhhhheeeeecCCccccCh--hhhh-------------------------------hhHhcchhhhc---ccCChHHH
Confidence 3589999998654332 2222 11111111111 12233445
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEE
Q 008750 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVI 311 (555)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIi 311 (555)
.+++-+.|..+|+-++..+-++..||-||||||+|||||+.+|+|+|.||..++||...+..+.++. .+.|.+.|.
T Consensus 126 ~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiY 205 (267)
T COG4167 126 RKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred HHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEE
Confidence 6678888999999999999999999999999999999999999999999999999999888877753 457999999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
|+.++..+..++|.|+||+.|+++.| |...+
T Consensus 206 V~QhlG~iKHi~D~viVM~EG~vvE~-G~t~~ 236 (267)
T COG4167 206 VTQHIGMIKHISDQVLVMHEGEVVER-GSTAD 236 (267)
T ss_pred EechhhHhhhhcccEEEEecCceeec-CChhh
Confidence 99999999999999999999998665 44333
No 355
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=300.97 Aligned_cols=251 Identities=21% Similarity=0.330 Sum_probs=194.1
Q ss_pred hhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEc
Q 008750 52 ATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVG 130 (555)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG 130 (555)
.-..|+.++.+..+.+++++....+++.....+.+.... -....+.+.||+|.|. .+++|+++||++++|+++|+||
T Consensus 219 lg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~--~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg 296 (497)
T COG5265 219 LGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWP--VRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVG 296 (497)
T ss_pred hHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccc--cccceEEEEEEEeeccccchhhcCccccccCccEEEEEe
Confidence 444567788999999999999888877666555444432 2345689999999995 5789999999999999999999
Q ss_pred CCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh----HHHHHHHHHH
Q 008750 131 VNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEIAGKL 196 (555)
Q Consensus 131 ~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~~~~~ 196 (555)
++|+||||++++|..++++++|.|.++|.++ .||+|||+..+ |+.|+..|+..+- .++...+.+.
T Consensus 297 ~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvL-FNDti~yni~ygr~~at~eev~aaa~~ 375 (497)
T COG5265 297 ESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL-FNDTIAYNIKYGRPDATAEEVGAAAEA 375 (497)
T ss_pred CCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccccee-hhhhHHHHHhccCccccHHHHHHHHHH
Confidence 9999999999999999999999999999764 49999999877 7889998885432 1111111111
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
.+++.. +..+.+. ++.....|.. .|||||||||+|||+++.
T Consensus 376 aqi~~f------------------------------------i~~lP~g--y~t~Vgergl-klSggekqrvaiar~ilk 416 (497)
T COG5265 376 AQIHDF------------------------------------IQSLPEG--YDTGVGERGL-KLSGGEKQRVAIARTILK 416 (497)
T ss_pred hhhhHH------------------------------------HHhCchh--hhcccchhee-eccCchHHHHHHHHHHhc
Confidence 111111 1111111 1111222332 699999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|+||+|||.||+||..+++.+...|++ .|.|-++|.|+++.+.. ||.|++|++|+++ ..|+..+.+.
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~-erg~h~~ll~ 486 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIV-ERGTHEELLA 486 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEE-ecCcHHHHHH
Confidence 9999999999999999999999998864 68999999999999975 9999999999974 4676665544
No 356
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=5.7e-36 Score=311.35 Aligned_cols=209 Identities=28% Similarity=0.465 Sum_probs=182.3
Q ss_pred CCccEEEEeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc-
Q 008750 94 ISSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE- 171 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~- 171 (555)
.+|.|.+.||+|.|.+. .++++++|-|..++++++|||||+|||||||+|+|.+.|..|.|... ....+++..|+..
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~-~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRH-SHNKLPRYNQHLAE 464 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccc-ccccchhhhhhhHh
Confidence 46789999999999766 59999999999999999999999999999999999999999999865 3446777777753
Q ss_pred -cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 172 -VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 172 -~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
+....++.++++..+. .....+.+..++.++||..
T Consensus 465 ~ldl~~s~le~~~~~~~--------------------------------------------~~~~~e~~r~ilgrfgLtg 500 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFP--------------------------------------------DEKELEEMRSILGRFGLTG 500 (614)
T ss_pred hcCcchhHHHHHHHhcc--------------------------------------------ccchHHHHHHHHHHhCCCc
Confidence 2334455555443221 1123456788999999998
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+..+.++++||+|||.||++|++++..|.+|||||||||||..++..+.++|.++.++||+||||+.++.+++++|++.+
T Consensus 501 d~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~ 580 (614)
T KOG0927|consen 501 DAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCE 580 (614)
T ss_pred cccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeccCChHHHHHH
Q 008750 331 MGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~~ 347 (555)
++.+..++|.|..|...
T Consensus 581 ~~~~~~~~G~i~~yk~~ 597 (614)
T KOG0927|consen 581 NGTVTKWDGDIEIYKEH 597 (614)
T ss_pred cCceeecCccHHHHHHH
Confidence 99999999999988764
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-34 Score=277.81 Aligned_cols=194 Identities=30% Similarity=0.398 Sum_probs=153.5
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEec-ccccCcCccHHHHHHHhhHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ-EFEVSMSRTVREEFMSAFKE 188 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q-~~~~~~~~tv~e~~~~~~~~ 188 (555)
.++|+||||+|++||++||||+||||||||+|+|+|.++|++|+|.++|. |+++.. ...+.+.+|.+||+....
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~---v~~li~lg~Gf~pelTGreNi~l~~-- 114 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK---VAPLIELGAGFDPELTGRENIYLRG-- 114 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce---EehhhhcccCCCcccchHHHHHHHH--
Confidence 36999999999999999999999999999999999999999999999873 443332 234557889999985310
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHH
Q 008750 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (555)
....+...+++.+++++.+.-.|. ++.+.|+.++|-||+-|+
T Consensus 115 -------------------------------------~~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRL 156 (249)
T COG1134 115 -------------------------------------LILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARL 156 (249)
T ss_pred -------------------------------------HHhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHH
Confidence 001122334455555555544442 678999999999999999
Q ss_pred HHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 269 ~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++|-|...+|+|||+||-.+..|..-.+.-.+.+. +.+.|+|+||||+..+.++||++++|++|.+ .+.|..++..
T Consensus 157 aFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i-~~~G~~~~vi 235 (249)
T COG1134 157 AFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQI-RMEGSPEEVI 235 (249)
T ss_pred HHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEE-EEcCCHHHHH
Confidence 99999999999999999999999976655444432 3469999999999999999999999999987 4567776655
Q ss_pred HH
Q 008750 346 LE 347 (555)
Q Consensus 346 ~~ 347 (555)
..
T Consensus 236 ~~ 237 (249)
T COG1134 236 PA 237 (249)
T ss_pred HH
Confidence 43
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-35 Score=264.10 Aligned_cols=204 Identities=27% Similarity=0.438 Sum_probs=167.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------- 160 (555)
.|.+++.++++.|++..-.+||||++.|||+.||||++|||||||+++|++-+.|++|+|.+...+
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 467999999999999999999999999999999999999999999999999999999999876421
Q ss_pred -----ceEEEEecccccCcCccHHH--HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc
Q 008750 161 -----MKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (555)
Q Consensus 161 -----~~ig~v~Q~~~~~~~~tv~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
..-|+|.|+|.--..++|-. |+-.-. + .++ .-..-
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERl---m---------------------a~G--------------~RHYG 125 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL---M---------------------AIG--------------ARHYG 125 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhH---H---------------------hhh--------------hhhhh
Confidence 13689999986444443321 221000 0 000 00112
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceE
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPM 309 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tv 309 (555)
.+.+.+..+|+++.++....|..|.++|||++||+.|||-|+..|.++++||||-+||+.....|.++++ +.+.++
T Consensus 126 ~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~ 205 (258)
T COG4107 126 NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205 (258)
T ss_pred hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceE
Confidence 4556677889999998888888899999999999999999999999999999999999999888888764 579999
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEee
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
||||||+..+.-+++|.++|++|.++.
T Consensus 206 viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 206 VIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred EEEechhHHHHHhhhcceeecCCCEec
Confidence 999999999999999999999998643
No 359
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=270.67 Aligned_cols=209 Identities=25% Similarity=0.336 Sum_probs=176.1
Q ss_pred ccEEEEeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------
Q 008750 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~----------- 161 (555)
.+++++||+.+-.++ .+|++|||+|++||+++|.||||||||||.++|+|. |++++|+|.++|.++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 468999999999885 999999999999999999999999999999999998 478999999999764
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.|..-+|.|.-.+..++.+++..+..... .. . .+ ..+...++.+
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~--------------~~-~--------------------~~-~~~~~~~~~e 125 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARR--------------GA-R--------------------GI-LPEFIKELKE 125 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhh--------------cc-c--------------------cc-cHHHHHHHHH
Confidence 58888999988888899887754331100 00 0 00 1133556778
Q ss_pred HhhhcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH---HcCCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~---l~~~~~tvIiiSHd~~ 317 (555)
.++.+++++.+++|++. .||||||+|..|+.+++.+|++.|||||-||||..+.+.+.+. +++.+.++++|||...
T Consensus 126 ~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 126 KAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred HHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 89999999889999986 7999999999999999999999999999999999998887765 4567999999999999
Q ss_pred HHHhhc-ceeEEecCCeEeeccCCh
Q 008750 318 FLDQLC-TKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 318 ~l~~~~-dri~~l~~G~~~~~~G~y 341 (555)
.++.+- |++.+|-+|++ +..|+.
T Consensus 206 ll~~i~pD~vhvl~~GrI-v~sG~~ 229 (251)
T COG0396 206 LLDYIKPDKVHVLYDGRI-VKSGDP 229 (251)
T ss_pred HHhhcCCCEEEEEECCEE-EecCCH
Confidence 998753 99999999997 456665
No 360
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-34 Score=269.01 Aligned_cols=153 Identities=37% Similarity=0.602 Sum_probs=128.5
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHH
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~ 179 (555)
++|+++.|++.++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+.. +. ...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~-----~~-------~~~ 69 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA-----KL-------PLE 69 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc-----cC-------CHH
Confidence 689999998888999999999999999999999999999999999999999999999864220 00 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (555)
.+ ...+++ +.+
T Consensus 70 -~~------------------------------------------------------------~~~i~~--------~~q 80 (157)
T cd00267 70 -EL------------------------------------------------------------RRRIGY--------VPQ 80 (157)
T ss_pred -HH------------------------------------------------------------HhceEE--------Eee
Confidence 00 000111 112
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
|||||+||++||++|+.+|+++||||||++||+.++.++.+.+.+ .+.|+|++||+++++..+||+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999999988753 36899999999999999999999998863
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-35 Score=260.96 Aligned_cols=191 Identities=25% Similarity=0.384 Sum_probs=164.0
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCCc--------eEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM--------KIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~~--------~ig~ 165 (555)
++.++||+.+.++..+|.+|||+|.+||++-|.||+|||||||+..+.|.+.++ +|++.+++++. ++|+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 578999999999999999999999999999999999999999999999999874 79999988643 6999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..+|.+|+..+....+ ........+...|++
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~----------------------------------------KG~aRr~~a~aAL~~ 121 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATL----------------------------------------KGNARRNAANAALER 121 (213)
T ss_pred eecccccccccccccceEEecCccc----------------------------------------ccHHHHhhHHHHHHH
Confidence 9999999999999999876543211 111223446677888
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHH----HHHHHHHHcCCCceEEEEecCHHHHHh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~----~~~l~~~l~~~~~tvIiiSHd~~~l~~ 321 (555)
.|++ ...++.|.+||||||-||+|-|+|+..|++|+||||+|.||..- ++|+...++..|...|+||||.+.+.
T Consensus 122 ~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp- 199 (213)
T COG4136 122 SGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP- 199 (213)
T ss_pred hccc-hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-
Confidence 8996 56789999999999999999999999999999999999999854 56666667788999999999999997
Q ss_pred hcceeEEe
Q 008750 322 LCTKIVET 329 (555)
Q Consensus 322 ~~dri~~l 329 (555)
...||+++
T Consensus 200 agsrVie~ 207 (213)
T COG4136 200 AGSRVIEM 207 (213)
T ss_pred CCCeeeee
Confidence 57788876
No 362
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-35 Score=264.39 Aligned_cols=196 Identities=27% Similarity=0.400 Sum_probs=167.1
Q ss_pred cEEEEeEEEEe-----CCc--eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------
Q 008750 97 GVKLENISKSY-----KGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (555)
Q Consensus 97 ~i~l~nls~~y-----~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------- 160 (555)
.|.++|++|+| ++. ++|+|+||+++.||+++|=|++|+|||||||+|.|.|.|++|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 48999999999 343 69999999999999999999999999999999999999999999875321
Q ss_pred ---------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 ---------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..||||+|.....+..+..+.++.+.- ...++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll---------------------------------------~~gv~ 124 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL---------------------------------------ARGVP 124 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH---------------------------------------HcCCC
Confidence 258888887666666555555443210 01344
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCce
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~t 308 (555)
.+....++..+|.++.++..++.-.|.++||||+|||.|||.++.+-+||||||||+.||...++-+.+++. ..|..
T Consensus 125 ~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaA 204 (235)
T COG4778 125 REVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAA 204 (235)
T ss_pred HHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCce
Confidence 556678899999999999999999999999999999999999999999999999999999999999999885 46999
Q ss_pred EEEEecCHHHHHhhcceeEEecC
Q 008750 309 MVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~ 331 (555)
+|=|-||.+.=+.+|||++.+..
T Consensus 205 lvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 205 LVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred EEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999998754
No 363
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.7e-34 Score=271.95 Aligned_cols=149 Identities=22% Similarity=0.288 Sum_probs=124.4
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----eEEEEecccccCcCccHHHHHHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFEVSMSRTVREEFMS 184 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----~ig~v~Q~~~~~~~~tv~e~~~~ 184 (555)
+++|+|+||+|++|++++|+|||||||||||++|. +++|+|.+++... .++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 57999999999999999999999999999999996 3789998875411 2333333
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHH
Q 008750 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (555)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (555)
.++++.+|+.....++++.+|||||
T Consensus 68 -------------------------------------------------------~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 68 -------------------------------------------------------LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred -------------------------------------------------------HHHHHHcCCCccccCCCcCcCCHHH
Confidence 1124455665334678889999999
Q ss_pred HHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 265 QMRMSLGKILLQD--PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 265 rqRv~lAraL~~~--p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
|||++|||||+.+ |++|||||||++||+.+++.+.+.+++ .|.|||+|||+++++. .||+|++|++|..
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 9999999999999 999999999999999999999888754 5899999999999984 7999999988753
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.5e-34 Score=342.63 Aligned_cols=207 Identities=24% Similarity=0.311 Sum_probs=169.5
Q ss_pred ccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCCCc------e
Q 008750 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~g~~~------~ 162 (555)
..++++||++.|+ ++.+|+|||++|++||++||+|+|||||||||++|+|+.+ |++|+|.++|.+. .
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3589999999995 3579999999999999999999999999999999999997 7899999998643 5
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+|||+|++.+.+..||+|++..... +.. . ......+..++++++
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~---------------l~~-~--------------------~~~~~~~~~~~v~~~ 881 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAY---------------LRQ-P--------------------KSVSKSEKMEYVEEV 881 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHH---------------hCC-C--------------------CCCCHHHHHHHHHHH
Confidence 8999999877788999999853210 000 0 001112234567888
Q ss_pred hhhcCCCccccCCCCC----CCChHHHHHHHHHHHhccCCC-EEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEec
Q 008750 243 MPELGFTADDGDRLVA----SFSSGWQMRMSLGKILLQDPD-LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~----~LSGGqrqRv~lAraL~~~p~-lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSH 314 (555)
++.+|+. +..++.+. .|||||||||+||++|+.+|+ ||||||||++||..+...+.+.|++ .|.|||+++|
T Consensus 882 l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H 960 (1394)
T TIGR00956 882 IKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960 (1394)
T ss_pred HHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 9999996 45677776 799999999999999999997 9999999999999999999888753 5899999999
Q ss_pred CHHH-HHhhcceeEEecCC-eEeeccCC
Q 008750 315 DRAF-LDQLCTKIVETEMG-VSRTYEGN 340 (555)
Q Consensus 315 d~~~-l~~~~dri~~l~~G-~~~~~~G~ 340 (555)
+++. +.+.||+|++|++| ++ .|.|+
T Consensus 961 ~~~~~~~~~~D~vl~L~~GG~i-v~~G~ 987 (1394)
T TIGR00956 961 QPSAILFEEFDRLLLLQKGGQT-VYFGD 987 (1394)
T ss_pred CCCHHHHHhcCEEEEEcCCCEE-EEECC
Confidence 9986 45679999999997 65 44443
No 365
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.5e-34 Score=321.60 Aligned_cols=199 Identities=28% Similarity=0.335 Sum_probs=164.4
Q ss_pred CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCCc-------eEEEEecccccCcCccH
Q 008750 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM-------KIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~~-------~ig~v~Q~~~~~~~~tv 178 (555)
++++|+|||++|++||.++|+|+|||||||||++|+|..+|. +|+|.++|.+. .+||++|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999999885 79999998653 58999999988889999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008750 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (555)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (555)
+||+..... +. .. ..+..++..++++++++.+|+.+ ..+..+.
T Consensus 117 ~e~l~f~~~---------------~~-~~--------------------~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg 159 (617)
T TIGR00955 117 REHLMFQAH---------------LR-MP--------------------RRVTKKEKRERVDEVLQALGLRK-CANTRIG 159 (617)
T ss_pred HHHHHHHHh---------------cC-CC--------------------CCCCHHHHHHHHHHHHHHcCchh-cCcCccC
Confidence 999854210 00 00 00111233456888999999964 3466665
Q ss_pred ------CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH-HHHhhcceeEE
Q 008750 259 ------SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLDQLCTKIVE 328 (555)
Q Consensus 259 ------~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~-~l~~~~dri~~ 328 (555)
.|||||||||+||++|+.+|++|+|||||++||..+...+.+.|++ .|.|+|+++|+++ .+.++||+|++
T Consensus 160 ~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l 239 (617)
T TIGR00955 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL 239 (617)
T ss_pred CCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE
Confidence 5999999999999999999999999999999999999998887753 5899999999995 77889999999
Q ss_pred ecCCeEeeccCChHHHH
Q 008750 329 TEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 329 l~~G~~~~~~G~y~~~~ 345 (555)
|++|++ +|.|++++..
T Consensus 240 l~~G~~-v~~G~~~~~~ 255 (617)
T TIGR00955 240 MAEGRV-AYLGSPDQAV 255 (617)
T ss_pred eeCCeE-EEECCHHHHH
Confidence 999986 5778876653
No 366
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=269.71 Aligned_cols=207 Identities=25% Similarity=0.353 Sum_probs=161.4
Q ss_pred cEEEEeEEEEeC-C----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYK-G----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~-~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
+|.+.|+++.|. + +++|+++||+|.+|+++.|||.||||||||+++|+|-+.|++|+|.++|.+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 366788888773 2 4699999999999999999999999999999999999999999999998754
Q ss_pred eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 ~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.++-|+|+|. ..+.+||.||+..+... .+.+.+...+ .......+
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~R-----g~~rgl~~~l----------------------------n~~~~~~f 127 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESR-----GKKRGLSSAL----------------------------NERRRSSF 127 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhc-----Ccccccchhh----------------------------hHHHHHHH
Confidence 3788999984 45789999998754210 0000000000 00111222
Q ss_pred HHHhhhcCCC-ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHH----HHcCCCceEEEEec
Q 008750 240 SKLMPELGFT-ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG----YLGKQDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~----~l~~~~~tvIiiSH 314 (555)
.+.+..+|+. ...++.++.-|||||||-++|+.|-+..|+||+|||-|++|||.+.+.+.+ ++.+.+.|.+||||
T Consensus 128 ~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTH 207 (263)
T COG1101 128 RERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207 (263)
T ss_pred HHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEec
Confidence 3333443332 234567788999999999999999999999999999999999998887765 45678999999999
Q ss_pred CHHHHHhhcceeEEecCCeEee
Q 008750 315 DRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~ 336 (555)
.++.+-.+.+|.|+|+.|+++.
T Consensus 208 nm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 208 NMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred cHHHHHhhCCeEEEEeCCeEEE
Confidence 9999999999999999999754
No 367
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=2.8e-33 Score=331.89 Aligned_cols=195 Identities=23% Similarity=0.289 Sum_probs=137.2
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc---cCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCc
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDV 307 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~---~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~ 307 (555)
.+..++ ++|+.+|+.....++++.+|||||+|||+||++|+ .+|++|||||||++||+..++.|.++|. +.|.
T Consensus 785 ~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~ 863 (1809)
T PRK00635 785 SIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863 (1809)
T ss_pred HHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 344556 47888999643368999999999999999999997 6999999999999999999999988774 4589
Q ss_pred eEEEEecCHHHHHhhcceeEEec------CCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 008750 308 PMVIISHDRAFLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (555)
Q Consensus 308 tvIiiSHd~~~l~~~~dri~~l~------~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (555)
|||+||||++++ .+||+|++|. +|++ ++.|+.+++..... .... .+....
T Consensus 864 TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~i-v~~Gtpeel~~~~s-~t~~-------------~l~~~l-------- 919 (1809)
T PRK00635 864 TVVIIEHNMHVV-KVADYVLELGPEGGNLGGYL-LASCSPEELIHLHT-PTAK-------------ALRPYL-------- 919 (1809)
T ss_pred EEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEE-EEeCCHHHHHhccC-chHH-------------HHHHHh--------
Confidence 999999999999 7999999996 4554 56787665542100 0000 000000
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCC
Q 008750 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (555)
Q Consensus 382 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGs 461 (555)
.... ..+ . +. +. . ... +...++.+.+.....|+++||+|++|++++|+|+|||
T Consensus 920 -----------~~~~-----~~~----~--~~-~~-~--~~~-l~~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGs 972 (1809)
T PRK00635 920 -----------SSPQ-----ELP----Y--LP-DP-S--PKP-PVPADITIKNAYQHNLKHIDLSLPRNALTAVTGPSAS 972 (1809)
T ss_pred -----------hccc-----ccc----c--cc-cc-c--ccc-cccceEEEeccccccccceeEEecCCcEEEEECCCCC
Confidence 0000 000 0 00 00 0 011 3445566665544579999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCceEEEEC
Q 008750 462 GKSTLLKLIMGLEKPRGGEVLLG 484 (555)
Q Consensus 462 GKSTLlk~L~G~~~p~~G~v~~~ 484 (555)
|||||+..+ ++. .|.+.+.
T Consensus 973 GKStL~~~~--L~~--~G~~~~~ 991 (1809)
T PRK00635 973 GKHSLVFDI--LYA--AGNIAYA 991 (1809)
T ss_pred ChhHHHHHH--HHh--hccEeee
Confidence 999987766 222 7777665
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.8e-33 Score=323.07 Aligned_cols=246 Identities=23% Similarity=0.355 Sum_probs=183.9
Q ss_pred HHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccH
Q 008750 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGK 136 (555)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGK 136 (555)
+-..+.++||+.+....+.+.-.......++..=+..+.|+++|++.+|.. ..||+||||+|++||++||||+.||||
T Consensus 1100 lEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGK 1179 (1381)
T KOG0054|consen 1100 LENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGK 1179 (1381)
T ss_pred HHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCH
Confidence 445567888888766543320000000101112255678999999999943 469999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q 008750 137 TTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206 (555)
Q Consensus 137 STLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (555)
|||+.+|-++.+|.+|+|.+||.++ +++.+||+|.+ |+.|||.|+- ++.+..+ +++.++++
T Consensus 1180 SSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL-FsGTvR~NLD-Pf~e~sD-----~~IW~ALe-- 1250 (1381)
T KOG0054|consen 1180 SSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL-FSGTVRFNLD-PFDEYSD-----DEIWEALE-- 1250 (1381)
T ss_pred HHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce-ecCccccccC-cccccCH-----HHHHHHHH--
Confidence 9999999999999999999999764 69999999988 8899999972 2211100 11111111
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCC
Q 008750 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286 (555)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEP 286 (555)
...+...+.+.-. ||+.. ....-.+||-||||.++|||||+++++||+|||+
T Consensus 1251 -------------------------~~~Lk~~v~~~p~--~Ld~~-v~egG~N~SvGQRQLlCLARALLr~skILvLDEA 1302 (1381)
T KOG0054|consen 1251 -------------------------RCQLKDVVSSLPG--GLDSE-VSEGGENFSVGQRQLLCLARALLRKSKILVLDEA 1302 (1381)
T ss_pred -------------------------HhChHHHHhhCCc--CCCce-ecCCCccCChHHHHHHHHHHHHhccCCEEEEecc
Confidence 1112222222111 23322 2233468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChH
Q 008750 287 TNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 287 Ts~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
|+++|+++-..+.+.+++ .++|||.|.|++..+.+ ||||+||++|++.+|+-++.
T Consensus 1303 TAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1303 TASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred cccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHH
Confidence 999999999999999986 48999999999999986 99999999999998876653
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.9e-33 Score=332.83 Aligned_cols=206 Identities=21% Similarity=0.292 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeC-------------CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCCCc
Q 008750 97 GVKLENISKSYK-------------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSNM 161 (555)
Q Consensus 97 ~i~l~nls~~y~-------------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~g~~~ 161 (555)
.+.++||++.++ ++.+|+|||++|++|+++||+|+|||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999999873 23699999999999999999999999999999999999763 789999998542
Q ss_pred -------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 162 -------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 162 -------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
.+||++|++.+++..||+|++..... +. ... .....+
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~---------------lr-~~~--------------------~~~~~~ 990 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAF---------------LR-LPK--------------------EVSKEE 990 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHH---------------hC-CCC--------------------CCCHHH
Confidence 48999999888889999999853210 00 000 001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCC-----CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CC
Q 008750 235 LDAKVSKLMPELGFTADDGDRLV-----ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD 306 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~-----~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~ 306 (555)
..++++++++.+|+.+ ..++.+ ..|||||||||+||++|+.+|+||||||||+|||..+...+.+.|++ .|
T Consensus 991 ~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g 1069 (1470)
T PLN03140 991 KMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1069 (1470)
T ss_pred HHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 3456788899999863 456654 58999999999999999999999999999999999999999888754 58
Q ss_pred ceEEEEecCHH-HHHhhcceeEEecC-CeEeeccCC
Q 008750 307 VPMVIISHDRA-FLDQLCTKIVETEM-GVSRTYEGN 340 (555)
Q Consensus 307 ~tvIiiSHd~~-~l~~~~dri~~l~~-G~~~~~~G~ 340 (555)
.|||+++|+++ .+.++||++++|++ |++ .|.|+
T Consensus 1070 ~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~-v~~G~ 1104 (1470)
T PLN03140 1070 RTVVCTIHQPSIDIFEAFDELLLMKRGGQV-IYSGP 1104 (1470)
T ss_pred CEEEEEeCCCCHHHHHhCCEEEEEcCCCEE-EEECC
Confidence 99999999998 46789999999997 665 46565
No 370
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=257.41 Aligned_cols=181 Identities=26% Similarity=0.385 Sum_probs=151.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
+++.+|++..-+.+++|.++||++.+||.+-|.|+||||||||||+|+|+.+|++|+|.+++.+. .+-|+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 46788999988999999999999999999999999999999999999999999999999987543 234555
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
-.+.+-..+|++||+.+.-. + ....-...+.+++..+|
T Consensus 82 H~~giK~eLTa~ENL~F~~~---------------~---------------------------~~~~~~~~i~~Al~~vg 119 (209)
T COG4133 82 HQPGIKTELTALENLHFWQR---------------F---------------------------HGSGNAATIWEALAQVG 119 (209)
T ss_pred ccccccchhhHHHHHHHHHH---------------H---------------------------hCCCchhhHHHHHHHcC
Confidence 55566677899999753210 0 01112345677788899
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
|. +..|.++.+||-|||+||+|||.++..+++.||||||++||.+.+..|..++. ..|+.||.+||..-.+.
T Consensus 120 L~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 120 LA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred cc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 95 57799999999999999999999999999999999999999999999998875 36889999999976664
No 371
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9e-32 Score=264.69 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=84.3
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEec
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSH 314 (555)
.++++.+|+.....++++.+|||||+|||+|||||+.+| ++|||||||++||+.++..+.+.|+ +.|.|+|+|||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 457888999754578999999999999999999999998 5999999999999999999888774 35899999999
Q ss_pred CHHHHHhhcceeEEe------cCCeEe
Q 008750 315 DRAFLDQLCTKIVET------EMGVSR 335 (555)
Q Consensus 315 d~~~l~~~~dri~~l------~~G~~~ 335 (555)
|++++. +||+|++| ++|+++
T Consensus 198 ~~~~~~-~~d~i~~l~~~~~~~~G~iv 223 (226)
T cd03270 198 DEDTIR-AADHVIDIGPGAGVHGGEIV 223 (226)
T ss_pred CHHHHH-hCCEEEEeCCCccccCCEEE
Confidence 999985 89999999 777764
No 372
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-31 Score=276.77 Aligned_cols=210 Identities=24% Similarity=0.418 Sum_probs=180.4
Q ss_pred CCCccEEEEeEEEEeC-Cc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc
Q 008750 93 SISSGVKLENISKSYK-GV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~-~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~ 170 (555)
..+|.+++.+|+|.|. +. ..+.++++.+.--+++++||+||+||||++|++.|...|..|.+.+.+ ..+|+|.+|+.
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-r~ri~~f~Qhh 436 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-RLRIKYFAQHH 436 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-cceecchhHhh
Confidence 4568899999999995 44 599999999999999999999999999999999999999999998874 57899999985
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.-++...|...- ... ..-.-..++.++..|..+|++.
T Consensus 437 vd~l~~~v~~vd---------------------------------------~~~----~~~pG~~~ee~r~hl~~~Gl~g 473 (582)
T KOG0062|consen 437 VDFLDKNVNAVD---------------------------------------FME----KSFPGKTEEEIRRHLGSFGLSG 473 (582)
T ss_pred hhHHHHHhHHHH---------------------------------------HHH----HhCCCCCHHHHHHHHHhcCCCc
Confidence 433322221110 000 0011225678899999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+...+++.+||||||-||+||.+...+|.+|+|||||||||.++...|...|+.+++.||+||||.+|+..+|+.+|+.+
T Consensus 474 ~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve 553 (582)
T KOG0062|consen 474 ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVE 553 (582)
T ss_pred hhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeccCChHHHHH
Q 008750 331 MGVSRTYEGNYSQYVL 346 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~ 346 (555)
+|++..+.|..++|..
T Consensus 554 ~g~vt~ieg~~~~yKk 569 (582)
T KOG0062|consen 554 DGKVTPIEGGIDKYKK 569 (582)
T ss_pred CCcEEeeeccHHHHHH
Confidence 9999999998877654
No 373
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.7e-31 Score=268.91 Aligned_cols=206 Identities=22% Similarity=0.427 Sum_probs=174.6
Q ss_pred CCccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 94 ISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 94 ~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
.+|.+-+.||+|.|+ .+++|.+++|-|.-..++|||||||.||||||++|.|.+.|+.|+..-+ ...+||++.|+..-
T Consensus 583 ~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-hrL~iG~FdQh~~E 661 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-HRLRIGWFDQHANE 661 (807)
T ss_pred CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-ceeeeechhhhhHH
Confidence 467889999999995 5689999999999999999999999999999999999999999998765 45789999998643
Q ss_pred --CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 173 --SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 173 --~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
....|..|+++..|. -....++..|..+||..
T Consensus 662 ~L~~Eetp~EyLqr~FN----------------------------------------------lpyq~ARK~LG~fGL~s 695 (807)
T KOG0066|consen 662 ALNGEETPVEYLQRKFN----------------------------------------------LPYQEARKQLGTFGLAS 695 (807)
T ss_pred hhccccCHHHHHHHhcC----------------------------------------------CChHHHHHHhhhhhhhh
Confidence 233455555543220 01234566788888875
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
..-.-.+..|||||+-||+||-.-+..|+|||||||||+||.+++..|.+.+.++.+.|||||||-.++.+.--.+||++
T Consensus 696 HAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE 775 (807)
T KOG0066|consen 696 HAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVE 775 (807)
T ss_pred ccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEc
Confidence 55555678999999999999999999999999999999999999999999999999999999999999988777889999
Q ss_pred CCeEeeccCChHHHHH
Q 008750 331 MGVSRTYEGNYSQYVL 346 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~ 346 (555)
+-.+...+|.|++|..
T Consensus 776 ~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 776 NQGIDEIDGDFEDYKK 791 (807)
T ss_pred cCChhhccccHHHHHH
Confidence 8888888999999864
No 374
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=300.91 Aligned_cols=205 Identities=28% Similarity=0.470 Sum_probs=178.8
Q ss_pred ccEEEEeEEEEeCCce-eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eE
Q 008750 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~i 163 (555)
..+.++|+++.|+... +++++||.|++||+.|+.|+|||||||++++|+|..+|++|++.+.|.+. .+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4589999999998766 99999999999999999999999999999999999999999999977543 39
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
||+||+..+...+|.+|.+... .+...+...++.+.++.++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~---------------------------------------arlrG~~~~di~~~v~~ll 683 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFY---------------------------------------ARLRGLPRSDIGSAIEKLL 683 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHH---------------------------------------HHHcCCChhHHHHHHHHHH
Confidence 9999999888889999876421 1112344556777789999
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ..+++++..+|||+|+|+.+|.||+.+|++++|||||+|+||.+++.+++++. +.|+.+|++||-+++++
T Consensus 684 ~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~E 762 (885)
T KOG0059|consen 684 RLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAE 762 (885)
T ss_pred HHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 999996 56788899999999999999999999999999999999999999999999875 34559999999999999
Q ss_pred hhcceeEEecCCeEeeccCCh
Q 008750 321 QLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y 341 (555)
.+|||+.+|.+|++.. -|+.
T Consensus 763 aLCtR~aImv~G~l~c-iGs~ 782 (885)
T KOG0059|consen 763 ALCTRTAIMVIGQLRC-IGSP 782 (885)
T ss_pred HHhhhhheeecCeeEE-ecCh
Confidence 9999999999999754 3553
No 375
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=6.2e-30 Score=292.60 Aligned_cols=180 Identities=19% Similarity=0.288 Sum_probs=134.5
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tv 309 (555)
+..++. +|+.+||.....++++.+|||||+|||+||++|+.+| ++|||||||++||+...+.|.+.|+ +.|.||
T Consensus 466 i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TV 544 (943)
T PRK00349 466 IRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTL 544 (943)
T ss_pred HHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 445554 7899999643479999999999999999999999997 9999999999999999999988864 468999
Q ss_pred EEEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Q 008750 310 VIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (555)
|+|+||++++. .||+|++| ++|++ ++.|++.++....... ...+..+
T Consensus 545 IvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i-v~~g~~~e~~~~~~~l---------------------~~~~l~~---- 597 (943)
T PRK00349 545 IVVEHDEDTIR-AADYIVDIGPGAGVHGGEV-VASGTPEEIMKNPNSL---------------------TGQYLSG---- 597 (943)
T ss_pred EEEeCCHHHHH-hCCEEEEeccccCCCCCEE-eeccCHHHHhcChhhe---------------------eehhhcc----
Confidence 99999999996 69999999 77775 6788877654311000 0000000
Q ss_pred hHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcH
Q 008750 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463 (555)
Q Consensus 384 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGK 463 (555)
+. ....+. . . .......|++++++. ..|+++||+|+.||+++|+|+|||||
T Consensus 598 ~~--------------~~~~~~--~-------~-~~~~~~~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGK 648 (943)
T PRK00349 598 KK--------------KIEVPK--E-------R-RKGNGKFLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGK 648 (943)
T ss_pred cc--------------cccccc--c-------c-cCCCcceEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCH
Confidence 00 000000 0 0 001234788999862 25999999999999999999999999
Q ss_pred HHHHHHHh
Q 008750 464 STLLKLIM 471 (555)
Q Consensus 464 STLlk~L~ 471 (555)
|||++.+.
T Consensus 649 STLl~~~l 656 (943)
T PRK00349 649 STLINETL 656 (943)
T ss_pred HHHHHHHH
Confidence 99998763
No 376
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1e-29 Score=282.24 Aligned_cols=209 Identities=27% Similarity=0.365 Sum_probs=173.8
Q ss_pred ccEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCCC-------
Q 008750 96 SGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP---DSGNVIKAKSN------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p---~~G~I~~~g~~------- 160 (555)
..+.++|++....+ +.+|+|||.++++||+.||+||+||||||||++|+|.... .+|+|.+||..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 34788899888843 5799999999999999999999999999999999999975 78999999932
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..+|||.|+..+.+.+||+|.+..... +. .. ..+...+.+.+++
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~---------------lr-lp--------------------~~~~~~~k~~~V~ 147 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSAL---------------LR-LP--------------------SSLSKEEKRERVE 147 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHH---------------hc-CC--------------------CCCCHHHHHHHHH
Confidence 358999999999999999998854210 00 00 0123356678899
Q ss_pred HHhhhcCCCccccCCCCC-----CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEE
Q 008750 241 KLMPELGFTADDGDRLVA-----SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVII 312 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~-----~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIii 312 (555)
+++.++|+. .-.|..+. .+|||||+||+||.-|+.+|.||+|||||+|||..+...+.+.|+ +.|+|||++
T Consensus 148 ~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~t 226 (613)
T KOG0061|consen 148 EVISELGLE-KCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICT 226 (613)
T ss_pred HHHHHcCCh-hhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEE
Confidence 999999997 45566665 599999999999999999999999999999999999888888775 359999999
Q ss_pred ecCH-HHHHhhcceeEEecCCeEeeccCChH
Q 008750 313 SHDR-AFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 313 SHd~-~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
=|.+ ..+-++.|++++|..|+. +|.|..+
T Consensus 227 IHQPss~lf~lFD~l~lLs~G~~-vy~G~~~ 256 (613)
T KOG0061|consen 227 IHQPSSELFELFDKLLLLSEGEV-VYSGSPR 256 (613)
T ss_pred EeCCcHHHHHHHhHhhhhcCCcE-EEecCHH
Confidence 9998 567788999999999964 6777554
No 377
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.6e-29 Score=287.00 Aligned_cols=171 Identities=22% Similarity=0.312 Sum_probs=127.5
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~ 316 (555)
.|..+||....+++++.+|||||+|||+||++|+.+| .+|||||||++||+.....|.++|+ +.|.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4778888643368999999999999999999999986 8999999999999999999988774 4689999999999
Q ss_pred HHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHH
Q 008750 317 AFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (555)
Q Consensus 317 ~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (555)
+++. .||+|++| ++|++ ++.|++.++...... . ...+.. ++
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~I-v~~g~~~el~~~~~~---------------l------t~~~l~----~~------ 596 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEV-VASGTPEEILANPDS---------------L------TGQYLS----GK------ 596 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEE-eeccCHHHHhcCchh---------------e------eeeccc----cc------
Confidence 9996 89999999 77765 667776554221000 0 000000 00
Q ss_pred HHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHH
Q 008750 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468 (555)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk 468 (555)
.....+ .. .....+.+|++++++. ..|+++||+|+.|++++|+|+||||||||++
T Consensus 597 --------~~~~~~--~~--------~~~~~~~~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 597 --------KKIEVP--KE--------RRPGNGKFLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred --------cccccc--cc--------ccCCCcceEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 000000 00 0011234789999873 2599999999999999999999999999998
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=5.2e-29 Score=295.82 Aligned_cols=170 Identities=22% Similarity=0.347 Sum_probs=126.6
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~ 316 (555)
.|..+||.....++.+.+|||||+|||+||+||+.+| ++|||||||++||+...+.|.++|+ +.|.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 3557888644468999999999999999999999999 8999999999999999999888775 4689999999999
Q ss_pred HHHHhhcceeEEec------CCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHH
Q 008750 317 AFLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (555)
Q Consensus 317 ~~l~~~~dri~~l~------~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (555)
+++ ++||+|++|. +|++ ++.|+++++...... ....+.....
T Consensus 539 ~vi-~~aDrVi~L~pGag~~gG~I-v~~G~~~eil~~~~~---------------------l~~~~l~~~~--------- 586 (1809)
T PRK00635 539 QMI-SLADRIIDIGPGAGIFGGEV-LFNGSPREFLAKSDS---------------------LTAKYLRQEL--------- 586 (1809)
T ss_pred HHH-HhCCEEEEEcCCcccCCCEE-EEecCHHHHhhChHH---------------------HHHHHhcCcc---------
Confidence 955 7899999997 4454 577887765431110 0000000000
Q ss_pred HHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHH
Q 008750 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468 (555)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk 468 (555)
....+ .........|++++++. ..|+++||+|+.||+|+|+|+||||||||++
T Consensus 587 ---------~~~~~-----------~~~~~~~~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 587 ---------TIPIP-----------EKRTNSLGTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred ---------cccCc-----------ccccCCCCeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 00000 00001124688998873 2699999999999999999999999999999
No 379
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=6.5e-30 Score=231.38 Aligned_cols=124 Identities=38% Similarity=0.629 Sum_probs=102.2
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEEecccccCcCccHHHHH
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEF 182 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v~Q~~~~~~~~tv~e~~ 182 (555)
|+||||+|++|++++|+|+||||||||+++|+|.++|++|+|.+++.+ ..++|++|++.++...||.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999999999998753 2599999998888888998872
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC---ccccCCCCCC
Q 008750 183 MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT---ADDGDRLVAS 259 (555)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~ 259 (555)
.. .++.++++.+++. ....++.+..
T Consensus 81 ~~----------------------------------------------------~~~~~~l~~l~~~~~~~~~~~~~~~~ 108 (137)
T PF00005_consen 81 SD----------------------------------------------------ERIEEVLKKLGLEDLLDRKIGQRASS 108 (137)
T ss_dssp HH----------------------------------------------------HHHHHHHHHTTHGGGTGSBGTSCGGG
T ss_pred cc----------------------------------------------------ccccccccccccccccccccccccch
Confidence 11 1122233333332 2334555599
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCC
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTN 288 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs 288 (555)
|||||||||+||+||+.+|++||||||||
T Consensus 109 LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 109 LSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred hhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99999999999999999999999999997
No 380
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1.6e-29 Score=243.23 Aligned_cols=155 Identities=19% Similarity=0.285 Sum_probs=122.5
Q ss_pred eeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc---------eEEEEcCCC-------ceEEEEecccccCcCcc
Q 008750 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---------GNVIKAKSN-------MKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~---------G~I~~~g~~-------~~ig~v~Q~~~~~~~~t 177 (555)
++++|++.+| +++|+|+||||||||+++|+|++.|.. |.+.+.|.+ ..|+|++|++..++...
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 6789999999 999999999999999999999987653 356555543 36999999987652100
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
. ..++.++++. ....++++
T Consensus 93 ~---------------------------------------------------------~~~~~~~l~~----~~~~~~~~ 111 (197)
T cd03278 93 S---------------------------------------------------------QGDVSEIIEA----PGKKVQRL 111 (197)
T ss_pred e---------------------------------------------------------hhhHHHHHhC----CCccccch
Confidence 0 0122233333 13456788
Q ss_pred CCCChHHHHHHHHHHHhc----cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecC
Q 008750 258 ASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~----~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
.+||||||||++||++|+ .+|+++||||||++||+.....+.+.+++ .+.|||+||||++++. +||+++.+..
T Consensus 112 ~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 112 SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence 999999999999999986 46799999999999999999999998864 3689999999999884 7999998853
No 381
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=4.5e-29 Score=234.36 Aligned_cols=129 Identities=33% Similarity=0.465 Sum_probs=115.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNY 492 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y 492 (555)
.|+++|+++.|++..+|+++||+|.+||+++|+||+|||||||||+|.++++|++|.|.++|.++ ++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 58999999999999999999999999999999999999999999999999999999999998543 3689
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc-------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|+. .|+|.+||.||+..+.. ....+.+..+|.+.|+. +..+..|..|||||||||+||
T Consensus 82 VFQ~f--nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 82 VFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred ecccc--cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHH
Confidence 99984 68899999999987742 12234678899999995 678999999999999999986
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=7.5e-28 Score=240.09 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=137.6
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH--------cC--CCCCceEEEEcCCC-ceEEEEecccccC-cCccH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA--------GQ--EEPDSGNVIKAKSN-MKIAFLSQEFEVS-MSRTV 178 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~--------G~--~~p~~G~I~~~g~~-~~ig~v~Q~~~~~-~~~tv 178 (555)
.-|+|||++|+.|..++|.|.+|||||||++.+. +. ..|..++...+... ..+-+|.|.|--- +.-++
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999662 11 12444443322211 2467788876321 11122
Q ss_pred ------HHHHHHhhHH---HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 179 ------REEFMSAFKE---EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 179 ------~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
.+++...|.+ ...+.. +.+.-... .....+.+.-...+...+... + .. ..++.++|+.+||.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~--~~l~~~~~-g~~i~~v~~ltv~e~~~~~~~---~--~~-~~~~~~~L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNR--ETLEVRYK-GKSIADVLDMTVEEALEFFEN---I--PK-IARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCH--HHHhcCcC-CCCHHHHhcCCHHHHHHHHHh---h--hh-HHHHHHHHHHcCCc
Confidence 2221111000 000000 00000000 000000010011111111111 1 11 24567789999997
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccC---CCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~---p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
....++++.+|||||+||++||++|+.+ |+++||||||++||+..+..+.+.+++ .|.|||+||||++++. .|
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~a 238 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CA 238 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hC
Confidence 5457899999999999999999999996 799999999999999999999887753 5899999999999996 69
Q ss_pred ceeEEe------cCCeEeeccC
Q 008750 324 TKIVET------EMGVSRTYEG 339 (555)
Q Consensus 324 dri~~l------~~G~~~~~~G 339 (555)
|+|++| ++|++ ++.|
T Consensus 239 D~ii~Lgp~~g~~~G~i-v~~G 259 (261)
T cd03271 239 DWIIDLGPEGGDGGGQV-VASG 259 (261)
T ss_pred CEEEEecCCcCCCCCEE-EEeC
Confidence 999999 67775 3444
No 383
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=6.8e-28 Score=239.72 Aligned_cols=182 Identities=20% Similarity=0.284 Sum_probs=126.2
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH----------------cCCCCCce--------E
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA----------------GQEEPDSG--------N 153 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~----------------G~~~p~~G--------~ 153 (555)
|+++|. ++|++..++++++ |++++|+||||||||||+++|+ +++.+.+| +
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 778887 6788888898887 7899999999999999999998 44555555 5
Q ss_pred EEEcCCC-------------ceEEEEecccccCcC-ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Q 008750 154 VIKAKSN-------------MKIAFLSQEFEVSMS-RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219 (555)
Q Consensus 154 I~~~g~~-------------~~ig~v~Q~~~~~~~-~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (555)
|.+++.+ ..++|++|++.++.. .|..+.. ..+ ...
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~-~~l-----------------~~~------------- 126 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVM-NLL-----------------ESA------------- 126 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHH-HHH-----------------HHc-------------
Confidence 5554321 126777777655442 3443321 110 000
Q ss_pred HHHHHHHHHhcCccc-----HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc----CCCEEEEcCCCCCC
Q 008750 220 FDLLQRKAQAVNLDT-----LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHL 290 (555)
Q Consensus 220 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~----~p~lLlLDEPTs~L 290 (555)
.+.... ...++.++ +++. ...+.++.+||||||||++|||||+. +|++|||||||++|
T Consensus 127 ---------gl~~~~~~~~~~qg~i~~l---~~l~-~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~l 193 (243)
T cd03272 127 ---------GFSRSNPYYIVPQGKINSL---TNMK-QDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAAL 193 (243)
T ss_pred ---------CCCCCCCcEEEEcCchHHh---hhcc-ccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCC
Confidence 000000 01112222 2232 23467789999999999999999963 68999999999999
Q ss_pred CHHHHHHHHHHHcCC--CceEEEEecCHHHHHhhcceeEEec
Q 008750 291 DLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 291 D~~~~~~l~~~l~~~--~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
|+.+.+.+.+.|++. +.|+|++||+.+. ..+||+|++|.
T Consensus 194 d~~~~~~~~~~l~~~~~~~~ii~~~h~~~~-~~~~d~i~~l~ 234 (243)
T cd03272 194 DAQYRTAVANMIKELSDGAQFITTTFRPEL-LEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HhhCCEEEEEE
Confidence 999999998887653 6788888888764 57999999985
No 384
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=9.3e-28 Score=234.15 Aligned_cols=182 Identities=19% Similarity=0.200 Sum_probs=127.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEE-CCCEEEEEcCCCccHHHHHHHHHc-CCCCCceEEEEc---------CCCceEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVK-KGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKA---------KSNMKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~-~Ge~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~---------g~~~~ig~ 165 (555)
.|+++|+. +|.+. ++|+|... +|++++|+|+||||||||+++|++ ++-+..+....+ .....|++
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 38899997 77554 55667654 589999999999999999999995 444443433321 01235888
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|+....+ ++..+. ... .....+.+ .+..
T Consensus 81 ~f~~~~~~~--~~~r~~--gl~--------------------------------------------~~~~~~~~--~l~~ 110 (213)
T cd03279 81 TFQLGGKKY--RVERSR--GLD--------------------------------------------YDQFTRIV--LLPQ 110 (213)
T ss_pred EEEECCeEE--EEEEec--CCC--------------------------------------------HHHHHHhh--hhhh
Confidence 888764321 111110 000 00000000 0111
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhcc----------CCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEE
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVII 312 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~----------~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIii 312 (555)
.++. ...++++.+|||||+||++||+||+. +|++|||||||++||+.+...+.+++++ .+.|+|+|
T Consensus 111 g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~i 189 (213)
T cd03279 111 GEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVI 189 (213)
T ss_pred cchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1221 34467889999999999999999985 6799999999999999999998887643 48899999
Q ss_pred ecCHHHHHhhcceeEEecCCe
Q 008750 313 SHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~ 333 (555)
|||++++..+||+|+++++|.
T Consensus 190 tH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 190 SHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred ECchHHHHhhCcEEEEEecCC
Confidence 999999999999999999885
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=3.6e-27 Score=254.19 Aligned_cols=191 Identities=28% Similarity=0.417 Sum_probs=152.0
Q ss_pred CccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
...|+++||+..-++ ...+++.+|+|++||.+-|.|+||||||||+|+|+|+-|--+|+|.+. .+..+-|+||.|++
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-~~~~~lflpQ~PY~- 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-ADSALLFLPQRPYL- 467 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-CCCceEEecCCCCC-
Confidence 577999999999864 679999999999999999999999999999999999999999999887 44568999999988
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc--
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD-- 251 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-- 251 (555)
+..|.+|-++.+.... . --++.+.++|.++||.+.
T Consensus 468 p~GtLre~l~YP~~~~----------------~---------------------------~~d~~l~~vL~~vgL~~L~~ 504 (604)
T COG4178 468 PQGTLREALCYPNAAP----------------D---------------------------FSDAELVAVLHKVGLGDLAE 504 (604)
T ss_pred CCccHHHHHhCCCCCC----------------C---------------------------CChHHHHHHHHHcCcHHHHH
Confidence 5669999887543110 0 001122223333333210
Q ss_pred ---ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhccee
Q 008750 252 ---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 252 ---~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri 326 (555)
..++=-..||+|||||+++||.|+++|++++|||.|++||+++...+.+++++ .+.|||-|+|+..... +.++.
T Consensus 505 rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~-~h~~~ 583 (604)
T COG4178 505 RLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWN-FHSRQ 583 (604)
T ss_pred HHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHH-HHhhh
Confidence 00111137999999999999999999999999999999999999999999998 7999999999987774 67777
Q ss_pred EEecC
Q 008750 327 VETEM 331 (555)
Q Consensus 327 ~~l~~ 331 (555)
+.+.+
T Consensus 584 l~l~~ 588 (604)
T COG4178 584 LELLD 588 (604)
T ss_pred eeecc
Confidence 77654
No 386
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5e-28 Score=233.67 Aligned_cols=130 Identities=38% Similarity=0.507 Sum_probs=115.8
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEecCC
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQ 497 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q~~ 497 (555)
..++++++++.|+...+|+++||+|.+||+|+|+||+|||||||||+|+|+.+|++|+|.++|..+ ..+|++|++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 358999999999988899999999999999999999999999999999999999999999998765 468999985
Q ss_pred ccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 498 AEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.|.|.+||.+|+...... ...+.+..+|+.+|+. +..+++|++|||||||||+||
T Consensus 82 --~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 82 --ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred --cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHH
Confidence 588999999999865431 1234689999999996 588999999999999999986
No 387
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.9e-27 Score=250.37 Aligned_cols=205 Identities=22% Similarity=0.369 Sum_probs=170.8
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------e
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------K 162 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ 162 (555)
..+.++++|++.. ..++|+||++++||++||.|--|||+|-|+++|.|..++.+|+|.++|.+. .
T Consensus 260 ~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 260 GEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4567889998743 269999999999999999999999999999999999999999999999642 5
Q ss_pred EEEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 163 IAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 163 ig~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
|+|||.|- .++..++|.+|+..+.. ... .... .++.....+.+
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l---------~~~------------------------~~~~-~i~~~~e~~~~ 381 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASL---------RRF------------------------SRRG-LIDRRKERALA 381 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhh---------hhh------------------------cccc-ccChHHHHHHH
Confidence 99999874 46678899999854310 000 0000 12233344567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCH
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~ 316 (555)
.++...+++.....+.++.+||||-+|||.|||.|+.+|+||||||||-|.|+-++..+.++++ +.|++||+||-++
T Consensus 382 ~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl 461 (500)
T COG1129 382 ERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL 461 (500)
T ss_pred HHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 7888899998878889999999999999999999999999999999999999999998888765 5799999999999
Q ss_pred HHHHhhcceeEEecCCeEee
Q 008750 317 AFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~ 336 (555)
.++..+||||+||.+|++.-
T Consensus 462 pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 462 PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999754
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=2.6e-27 Score=242.19 Aligned_cols=186 Identities=25% Similarity=0.427 Sum_probs=145.0
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
..++..++++.|++. .|+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ..+.+|+|=||-....+.
T Consensus 341 ~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 341 TLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVSYKPQYISPDYD 415 (591)
T ss_pred eeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----CccceEeecceeecCCCC
Confidence 345556666666532 233334456777999999999999999999999999999998 356789999998877788
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
.||.+.+....... +. -.....+++.-|.|. ...++
T Consensus 416 gtV~~~l~~~~~~~-------------~~------------------------------~s~~~~ei~~pl~l~-~i~e~ 451 (591)
T COG1245 416 GTVEDLLRSAIRSA-------------FG------------------------------SSYFKTEIVKPLNLE-DLLER 451 (591)
T ss_pred CcHHHHHHHhhhhh-------------cc------------------------------cchhHHhhcCccchH-HHHhc
Confidence 99998875432110 00 001123345556664 46789
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
++.+|||||.|||+||.+|..++|++|||||+++||++.+-.....+ .+.++|.++|.||+.+++.++||+++.+
T Consensus 452 ~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 452 PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999999999999999999999999999998766555544 4578999999999999999999999886
No 389
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.6e-27 Score=226.76 Aligned_cols=133 Identities=32% Similarity=0.507 Sum_probs=120.0
Q ss_pred ceEEEEeeeEEcCCcc----ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 423 SVVTIKNLEFGYEDRL----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~----ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
+.|+++|+++.|+... ++++|||+|.+||+++|+|++|||||||+++|+|+.+|++|+|.++|..+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4689999999998776 99999999999999999999999999999999999999999999998533
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+.+++|||...++|..||.+.+.+... +..+.++..+|..+|++++.++|.|+.|||||+||++||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIA 153 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIA 153 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHH
Confidence 2458999999999999999999988753 123455899999999999999999999999999999986
No 390
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.2e-27 Score=230.15 Aligned_cols=132 Identities=34% Similarity=0.533 Sum_probs=114.6
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-------eeeEEEec
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------VLPNYFEQ 495 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~-------~~~~y~~Q 495 (555)
+.|+++|+++.|++.++|+++||+|++|+.++|+||||+|||||+|+|+|+++|.+|+|.+.+.+ .++||+||
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 46899999999986579999999999999999999999999999999999999999999987653 46899999
Q ss_pred CCccCCCCCCCHHHHHHhhccc----------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~----------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
......++..||.|.+...... ...+.+...|.+.|+. +..++++..|||||+|||.||
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHH
Confidence 7544566788999999865221 1135789999999996 789999999999999999886
No 391
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.5e-27 Score=236.93 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=135.9
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCC-------------CceE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKS-------------NMKI 163 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~g~-------------~~~i 163 (555)
|.++|. ++|.+..++.+++ ..+++|||+||||||||+++|++++.|+ .|++.+.+. ...|
T Consensus 6 ~~~~~f-~~~~~~~~~~~~~-----~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISGFD-----PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeeccCC-----CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 677777 6776554443332 4599999999999999999999999876 456665432 1268
Q ss_pred EEEecccc---------cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC-cc
Q 008750 164 AFLSQEFE---------VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LD 233 (555)
Q Consensus 164 g~v~Q~~~---------~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 233 (555)
++++|++. +.+..||.+++....... ..++ ..
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~--------------------------------------~~in~~~ 121 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNK--------------------------------------YLINGHR 121 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceE--------------------------------------EEECCEE
Confidence 99999852 233556665542110000 0001 11
Q ss_pred cHHHHHHHHhhhcCCCc-------------------cccCCCCCCCChHHHHHHHHHHHhc----cCCCEEEEcCCCCCC
Q 008750 234 TLDAKVSKLMPELGFTA-------------------DDGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHL 290 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~-------------------~~~~~~~~~LSGGqrqRv~lAraL~----~~p~lLlLDEPTs~L 290 (555)
...+++.++|+.+|+.. ...++++.+||||||||++||+||+ .+|++|||||||++|
T Consensus 122 ~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~l 201 (251)
T cd03273 122 AQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAAL 201 (251)
T ss_pred eeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCC
Confidence 22355666777777641 2346788999999999999999998 578999999999999
Q ss_pred CHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEec
Q 008750 291 DLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 291 D~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
|+...+++.+.|++ .|.|+|+|||+.+.+. .||+|+-+.
T Consensus 202 d~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 202 DLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 99999999998864 4789999999977775 699998764
No 392
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.94 E-value=3.9e-26 Score=231.58 Aligned_cols=351 Identities=23% Similarity=0.365 Sum_probs=202.8
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--eEEEEecc-cccCcCccHHHHHHHhhHHHHHHHHHHH
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--KIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--~ig~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (555)
++|++.|+||.||.||||-+++++|-++|.-|.-... .+. -++|..-. ..-+|..-+.+++-.....+. +.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~p-p~w~~il~~frgselq~yftk~le~~lk~~~kpQy-----vd 171 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNP-PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY-----VD 171 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCC-cchHHHhhhhhhHHHhhhhhhhccccccCcCChHH-----HH
Confidence 5899999999999999999999999999987753211 100 11221100 000011111111111100000 00
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 008750 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (555)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~ 277 (555)
.+-+.... .++..++.. .-.....+++..+.|. ...+|.+..|||||-||.+||.+.+++
T Consensus 172 ~ipr~~k~------~v~~~l~~~-------------~~r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~ 231 (592)
T KOG0063|consen 172 QIPRAVKG------TVGSLLDRK-------------DERDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQK 231 (592)
T ss_pred HHHHHHHH------HHHHHHHHH-------------hhcccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhh
Confidence 00000000 011111110 0111334455555554 356788899999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEecC-----CeEeeccCChHHHHHHHH
Q 008750 278 PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEM-----GVSRTYEGNYSQYVLEKA 349 (555)
Q Consensus 278 p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~-----G~~~~~~G~y~~~~~~~~ 349 (555)
.++.++|||.+.||+..+......++ .-+.-||+|.||++.++.+.|-|..+-. |.+. -+|+-
T Consensus 232 advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGvp~aYGVVT---~Pfsv------ 302 (592)
T KOG0063|consen 232 ADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT---MPFSV------ 302 (592)
T ss_pred cceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecCCccceEEE---eccch------
Confidence 99999999999999987655444433 4567899999999999999999988742 1111 11110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEe
Q 008750 350 AWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429 (555)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 429 (555)
.+.++-+-.+-.. . +. ..+......|.+.+... + +=+-
T Consensus 303 --------------------r~giniFl~g~ip--t------------en---~rfR~~~l~f~~~~~~~--~---ek~~ 340 (592)
T KOG0063|consen 303 --------------------REGINIFLDGLIP--T------------EN---LRFRPECLVFLASDLSS--E---DRRT 340 (592)
T ss_pred --------------------hhhhhhhhhccCC--c------------cc---ccccchhheeeeccccc--h---hhhh
Confidence 0000000000000 0 00 00001111222211110 0 0011
Q ss_pred eeEEcCC-ccceeceEEEEecCC-----EEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCceeeeEEEecCCccCCC
Q 008750 430 LEFGYED-RLLFNRANLTIERGE-----KTAIIGPNGCGKSTLLKLIMGLEKPRGGE-VLLGEHNVLPNYFEQNQAEALD 502 (555)
Q Consensus 430 l~~~y~~-~~ll~~vsl~i~~Ge-----~iaI~G~NGsGKSTLlk~L~G~~~p~~G~-v~~~~~~~~~~y~~Q~~~~~l~ 502 (555)
-.+.|++ +..+-++.|.|..|| ++..+|.||.|||||+++++|.++|+.|. | +.+.+.|-+|... --
T Consensus 341 ~~y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~----p~lnVSykpqkis--pK 414 (592)
T KOG0063|consen 341 GRYSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI----PVLNVSYKPQKIS--PK 414 (592)
T ss_pred heeccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc----cccceeccccccC--cc
Confidence 1234654 346777889999884 78999999999999999999999999873 3 2346778898642 22
Q ss_pred CCCCHHHHHHhhcccC--cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 503 LDKTVLETVAEAAEDW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 503 ~~~tv~e~l~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
..-||.+.+...-.+. ..+-+......+.+ ....++.+..|||||+|||+||
T Consensus 415 ~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i-e~i~dqevq~lSggelQRval~ 468 (592)
T KOG0063|consen 415 REGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI-ENIIDQEVQGLSGGELQRVALA 468 (592)
T ss_pred ccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH-HHHHhHHhhcCCchhhHHHHHH
Confidence 4457777776543221 11234445555555 3567899999999999999985
No 393
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=9.7e-28 Score=217.35 Aligned_cols=194 Identities=30% Similarity=0.358 Sum_probs=155.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+++++||... +=|-.+|.++..||++-+|||||||||||+-.++|++ |-+|+|.++|.+. .-+|+
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 4678888653 2366789999999999999999999999999999997 6799999999763 35888
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
.|+..-.|.+.|+.++.... +.......+..+...+
T Consensus 78 sQqq~p~f~mpV~~YL~L~q--------------------------------------------P~~~~a~~i~~i~~~L 113 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQ--------------------------------------------PDKTRTELLNDVAGAL 113 (248)
T ss_pred hhccCCcchhhhhhhhhhcC--------------------------------------------chHHHHHHHHHHHhhh
Confidence 88877777788887764211 0112233456677778
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhcc-----CC--CEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCH
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQ-----DP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~-----~p--~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~ 316 (555)
+++ +.+.|.++.|||||-|||-||...++ || ++||||||.|+||+.....|..+| ...|.+|||.+||+
T Consensus 114 ~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL 192 (248)
T COG4138 114 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192 (248)
T ss_pred ccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch
Confidence 886 56789999999999999999998876 33 699999999999998777666655 45799999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCCh
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y 341 (555)
+--.+-||++|.+..|++. ..|.-
T Consensus 193 NhTLrhA~~~wLL~rG~l~-~~G~~ 216 (248)
T COG4138 193 NHTLRHAHRAWLLKRGKLL-ASGRR 216 (248)
T ss_pred hhHHHHHHHHHHHhcCeEE-eecch
Confidence 9888899999999999874 34543
No 394
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=5.8e-27 Score=240.01 Aligned_cols=131 Identities=31% Similarity=0.505 Sum_probs=116.8
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~ 493 (555)
...++++|+++.|++..+++++||+|++||.++|+||||||||||||+|+|++.|++|+|.++|.++ .++++
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 3579999999999988999999999999999999999999999999999999999999999999876 25899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc-c--Cc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE-D--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-~--~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|+. .|+|.+||.+|++.... . .. ...+..+|..+++. +..+|+|+.|||||||||+||
T Consensus 83 FQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALA 148 (352)
T COG3842 83 FQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALA 148 (352)
T ss_pred ecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHH
Confidence 9984 69999999999987654 1 11 23678899999996 488999999999999999987
No 395
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.7e-25 Score=225.32 Aligned_cols=200 Identities=24% Similarity=0.338 Sum_probs=147.7
Q ss_pred ccEEEEeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 96 ~~i~l~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
..|+++||.|.|... .=+..||++|++||++-|||.||||||||+++++|+++|++|+|.+||.+..
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~------------ 388 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS------------ 388 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC------------
Confidence 459999999999765 5688999999999999999999999999999999999999999999987531
Q ss_pred CccHHHH--HHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc-
Q 008750 175 SRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD- 251 (555)
Q Consensus 175 ~~tv~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~- 251 (555)
..+..++ +.++. ..|..+...+ -..+....++.+..+|+.+.+.+.
T Consensus 389 ~e~ledYR~LfSav--------------------FsDyhLF~~l-----------l~~e~~as~q~i~~~LqrLel~~kt 437 (546)
T COG4615 389 AEQLEDYRKLFSAV--------------------FSDYHLFDQL-----------LGPEGKASPQLIEKWLQRLELAHKT 437 (546)
T ss_pred CCCHHHHHHHHHHH--------------------hhhHhhhHhh-----------hCCccCCChHHHHHHHHHHHHhhhh
Confidence 1111111 00000 0000000000 001111234455666666555321
Q ss_pred -ccCC--CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH----HcCCCceEEEEecCHHHHHhhcc
Q 008750 252 -DGDR--LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 252 -~~~~--~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~----l~~~~~tvIiiSHd~~~l~~~~d 324 (555)
..+. .+-.||.|||+|+++--||+-+-+|++|||=-+.-||.-++++... |++.|+||+.||||-..-. .||
T Consensus 438 sl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~AD 516 (546)
T COG4615 438 SLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HAD 516 (546)
T ss_pred cccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHH
Confidence 2222 2347999999999999999999999999999999999999998874 5789999999999966553 699
Q ss_pred eeEEecCCeEeeccC
Q 008750 325 KIVETEMGVSRTYEG 339 (555)
Q Consensus 325 ri~~l~~G~~~~~~G 339 (555)
|++.+++|++....|
T Consensus 517 rll~~~~G~~~e~tg 531 (546)
T COG4615 517 RLLEMRNGQLSELTG 531 (546)
T ss_pred HHHHHhcCceeeccc
Confidence 999999999877665
No 396
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.6e-27 Score=231.98 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=132.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
|+++|+. .|++..++++++| ++++|+||||||||||+++|+-..-.+...+ ...++++++|+...++..+
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~----~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM----RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh----hhhhHHHHhcCCCCCCCCc
Confidence 7889985 8999999999998 8999999999999999999983211110000 1135788888877766667
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH--HHHHHhhhcCCCccccCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA--KVSKLMPELGFTADDGDR 255 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~lgl~~~~~~~ 255 (555)
+.++....-.. ...+.+ . ...+....... ...++++.++++ +..++
T Consensus 76 ~~~~~~~~~~~-------------------~~~~~l-----------~-~~g~~~~~~~~~v~~~~~~~~~~L~-~~~~~ 123 (212)
T cd03274 76 SCSVEVHFQEI-------------------IDKPLL-----------K-SKGIDLDHNRFLILQGEVEQIAQMP-KKSWK 123 (212)
T ss_pred eEEEEEEEEeC-------------------CCHHHH-----------H-HCCcCCCCCceEEcCCcEEEeeccc-ccccc
Confidence 66643211000 000000 0 00000000000 114455667775 44577
Q ss_pred CCCCCChHHHHHHHHHHHhcc----CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEe
Q 008750 256 LVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~----~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
++..||+|||||++||+|++. +|+++||||||++||+.++.++.+.+++ .+.|+|+|||+.+ +..+||+|++|
T Consensus 124 ~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~-~~~~~d~v~~~ 202 (212)
T cd03274 124 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNN-MFELADRLVGI 202 (212)
T ss_pred chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHH-HHHhCCEEEEE
Confidence 789999999999999999974 5899999999999999999999998864 3679999999965 55789999998
Q ss_pred cC
Q 008750 330 EM 331 (555)
Q Consensus 330 ~~ 331 (555)
..
T Consensus 203 ~~ 204 (212)
T cd03274 203 YK 204 (212)
T ss_pred Ee
Confidence 53
No 397
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=1.4e-26 Score=227.52 Aligned_cols=129 Identities=35% Similarity=0.552 Sum_probs=112.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
.++++|++++|+++++++++||+|++||+++|+||||||||||||+|+|+++|.+|+|.++|+++ .++|+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999866 36899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc-------cCcH---HHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE-------DWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-------~~~~---~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|.+ ......||.|.+..... .++. +.+...|..+++. +..+|++.+|||||||||.||
T Consensus 82 pQ~~--~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iA 150 (258)
T COG1120 82 PQSP--SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIA 150 (258)
T ss_pred ccCC--CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHH
Confidence 9985 46677899999976521 1222 2477789999995 688999999999999999886
No 398
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.3e-26 Score=234.36 Aligned_cols=129 Identities=34% Similarity=0.494 Sum_probs=114.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|..||.++|+||||||||||||+|+|+++|++|+|.++|.++ .+++++|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 47999999999875489999999999999999999999999999999999999999999999876 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+. .|.|..||.+|+..... ......++...+.+++. ..++|+|..|||||||||+||
T Consensus 83 ~y--ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAla 145 (338)
T COG3839 83 NY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALA 145 (338)
T ss_pred Cc--cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHH
Confidence 84 68899999999987643 12245688889999995 589999999999999999986
No 399
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=3.5e-26 Score=221.37 Aligned_cols=168 Identities=23% Similarity=0.336 Sum_probs=123.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH----cCCCCCceEEEEc-------CCCceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA----GQEEPDSGNVIKA-------KSNMKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~----G~~~p~~G~I~~~-------g~~~~ig~v 166 (555)
|+++|+. +| .+..++++.+| +++|+|+||||||||+++|. |...|+.|.+..+ .....|+++
T Consensus 4 l~l~nfr-~~-----~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 76 (204)
T cd03240 4 LSIRNIR-SF-----HERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLA 76 (204)
T ss_pred EEEECcc-cc-----cCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEE
Confidence 5666663 22 12234566677 99999999999999999995 9999988865411 122368999
Q ss_pred ecccc-----cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 167 SQEFE-----VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 167 ~Q~~~-----~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
+|++. +....|+.+++.... +..+.+
T Consensus 77 f~~~~~~~~~v~r~~~~~~~~~~~~-------------------------------------------------~~~~~~ 107 (204)
T cd03240 77 FENANGKKYTITRSLAILENVIFCH-------------------------------------------------QGESNW 107 (204)
T ss_pred EEeCCCCEEEEEEEhhHhhceeeec-------------------------------------------------hHHHHH
Confidence 99872 222336666553210 001111
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHH------HHHHHHhccCCCEEEEcCCCCCCCHHHHH-HHHHHHcC---C-CceEE
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMR------MSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGK---Q-DVPMV 310 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqR------v~lAraL~~~p~lLlLDEPTs~LD~~~~~-~l~~~l~~---~-~~tvI 310 (555)
. .++++.+||+||+|| ++||+||+.+|+++||||||++||+.... ++.+++.+ . +.|||
T Consensus 108 ~----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~ii 177 (204)
T cd03240 108 P----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLI 177 (204)
T ss_pred H----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEE
Confidence 1 156678999999996 78999999999999999999999999999 88888743 2 78999
Q ss_pred EEecCHHHHHhhcceeEEecCC
Q 008750 311 IISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G 332 (555)
+|||+++++. .||+|++|++.
T Consensus 178 iitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 178 VITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred EEEecHHHHh-hCCEEEEEeeC
Confidence 9999999885 69999999754
No 400
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.5e-25 Score=216.27 Aligned_cols=129 Identities=37% Similarity=0.487 Sum_probs=109.2
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
++++|+++.|.. ..+|+++||+|++||.++|+||+||||||||++|.|+.+|++|.|.++|.++
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 578999998864 2689999999999999999999999999999999999999999999998655
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc----c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE----D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+||++|+. .|-+..||.||+..... . .....+..++..+|+.....+++|..|||||||||+||
T Consensus 82 ~~~iGfvFQ~~--nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccC--CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 378999984 57799999999985321 1 12345778899999975555588999999999999986
No 401
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=7.4e-26 Score=216.87 Aligned_cols=129 Identities=31% Similarity=0.485 Sum_probs=115.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEEe
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFE 494 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~~ 494 (555)
|+++|+++.|+++.+++++||+|..||.+.++||+||||||+||+|.++.+|++|+|.++|.++ ++||+-
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 6899999999999999999999999999999999999999999999999999999999999866 378999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--cCcH----HHHHHHHhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--DWRI----DDIKGLLGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~~----~~~~~~L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
|.. .|+|..||.+|++.... .|.. ..+.++|..+|+.+ +..+|.|++|||||+|||.+|
T Consensus 82 Qqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 82 QQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHH
Confidence 974 69999999999986543 4443 45788999999986 689999999999999999754
No 402
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=4.1e-24 Score=242.97 Aligned_cols=203 Identities=25% Similarity=0.334 Sum_probs=151.3
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCCC-------ceEEEEecccccCcCccHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP---DSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p---~~G~I~~~g~~-------~~ig~v~Q~~~~~~~~tv~ 179 (555)
..+|+|+|.-+++|+.+.++|+.|||||||++.++|.+.- ..|+|.++|.+ ..++|.+|+..-.+.+||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3699999999999999999999999999999999998753 35699999864 3589999998777999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc----ccCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD----DGDR 255 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~----~~~~ 255 (555)
|-+-.+.+ +..... +.++..+ .+......+.+++.+|+++. ..|.
T Consensus 208 eTldFa~r---------------ck~~~~----------r~~~~~R------~e~~~~~~d~~lkilGL~~~~dT~VGnd 256 (1391)
T KOG0065|consen 208 ETLDFAAR---------------CKGPGS----------RYDEVSR------REKLAAMTDYLLKILGLDHCADTLVGND 256 (1391)
T ss_pred ehhhHHHh---------------ccCCcc----------ccccccH------HHHHHHHHHHHHHHhCchhhccceeccc
Confidence 97643211 000000 0000000 00111245677888898642 3466
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH-HHHHhhcceeEEec
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTKIVETE 330 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~-~~l~~~~dri~~l~ 330 (555)
.++..|||||+||.+|-+++.+|.++.+||+|.|||..+.-.+.+.|+. .+.|+++.=|.. ..+-.+-|.|++|.
T Consensus 257 ~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~ 336 (1391)
T KOG0065|consen 257 MVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLS 336 (1391)
T ss_pred ccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeee
Confidence 6778999999999999999999999999999999999887777776653 467777766654 55667889999999
Q ss_pred CCeEeeccCChHHH
Q 008750 331 MGVSRTYEGNYSQY 344 (555)
Q Consensus 331 ~G~~~~~~G~y~~~ 344 (555)
+|.. +|.|++++.
T Consensus 337 eG~~-iy~Gp~d~~ 349 (1391)
T KOG0065|consen 337 EGYQ-IYQGPRDEV 349 (1391)
T ss_pred ccce-EEeccHHHH
Confidence 9986 566766543
No 403
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=4.5e-25 Score=210.51 Aligned_cols=132 Identities=30% Similarity=0.434 Sum_probs=117.2
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------- 488 (555)
.++|++++++++|+++.+++++||+|++||+++|+||+|||||||||+|.|+++|++|+|++.|.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999999998876
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc---cCcHH----HHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE---DWRID----DIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~~~----~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+.|+++|+ ..|+.+.||.||++.... ..... -+..-|+..|++++..++.|++||||++.|++||
T Consensus 86 r~GvlFQ~--gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 86 RMGVLFQQ--GALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA 157 (263)
T ss_pred heeEEeec--cccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHH
Confidence 26899997 479999999999986432 23333 3555689999999889999999999999999987
No 404
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=224.44 Aligned_cols=211 Identities=25% Similarity=0.418 Sum_probs=177.4
Q ss_pred CCCccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 93 SISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
+..+.++++|++..-. +.+.+++|||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|.+.
T Consensus 253 pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 4578899999998764 35789999999999999999999999999999999999999999999999763
Q ss_pred --eEEEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 --KIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 --~ig~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|||.|- .+.+.+|+.||+....... + .+... ..++...+.
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~-------------------~------------~~~~~-g~l~~~~i~ 380 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK-------------------K------------PFSRG-GFLDRRAIR 380 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccc-------------------c------------ccccc-cccCHHHHH
Confidence 589999985 4557889999975421100 0 00000 023445567
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiS 313 (555)
..+.++++++++.......++.+||||.+||+-+||-|..+|++||+.+||-|||..+.+.+.+.| ++.|+.|++||
T Consensus 381 ~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS 460 (501)
T COG3845 381 KFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLIS 460 (501)
T ss_pred HHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 788889999999766677888999999999999999999999999999999999999999998876 45799999999
Q ss_pred cCHHHHHhhcceeEEecCCeEe
Q 008750 314 HDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~ 335 (555)
-|++++..+||||.+|.+|++.
T Consensus 461 ~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 461 EDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred hhHHHHHHhhheeeeeeCCcee
Confidence 9999999999999999999874
No 405
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.8e-25 Score=216.29 Aligned_cols=131 Identities=37% Similarity=0.551 Sum_probs=113.4
Q ss_pred ceEEEEeeeEEcCCc-cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------e
Q 008750 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~-~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-----------~ 490 (555)
..+++++++|.|++. .+++++||+|.+||+++|+|+||||||||+++|.|+++|++|.|.++|.++. +
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468899999999875 8999999999999999999999999999999999999999999999886533 7
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhccc--CcH----HHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAED--WRI----DDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~~----~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
||++|+|.+++ ...||.++++..... ... ..+...|..+++. +..+++|+.|||||||||+||
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhh
Confidence 99999986544 777999999876432 222 3477889999996 468999999999999999997
No 406
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=6.7e-24 Score=243.19 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=92.5
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC---CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEE
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p---~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIi 311 (555)
+..++|..+||.....++++.+|||||+||+.||++|+.+| +++||||||++||+..+..|.+.|+ +.|.|||+
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34678999999754578899999999999999999999999 9999999999999999999888775 35899999
Q ss_pred EecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHH
Q 008750 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~ 346 (555)
|||+++++. .||+|++| ++|++ ++.|..+++..
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~I-v~~Gt~~el~~ 927 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEI-VATGTPEEVAK 927 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEE-EEeCCHHHHHh
Confidence 999999995 69999999 56765 57788776654
No 407
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=7e-25 Score=204.09 Aligned_cols=206 Identities=22% Similarity=0.319 Sum_probs=153.2
Q ss_pred ccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCCC-------
Q 008750 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~g~~------- 160 (555)
+.+.+.|++..+. -..++++||+++.+||+-||||++|||||-..|.|+|..+- +.-...+++.+
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 4578899999883 34699999999999999999999999999999999998753 22333343322
Q ss_pred -------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 -------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..|++++|+|. +.++.+|-.-+.... ....+-+ ++.+..+
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~I---------------------P~wTfkg----------rWWq~F~ 130 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI---------------------PAWTYKG----------RWWQRFG 130 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhC---------------------ccccccc----------hHhhhhc
Confidence 24788888874 333333322211100 0000000 0111111
Q ss_pred cccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CC
Q 008750 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~ 305 (555)
....++.++|.++|+.+ +....+|.+|--||-|+|.||.|++.+|.+||.|||||++|+.+...+.++|. ..
T Consensus 131 --WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~ 208 (330)
T COG4170 131 --WRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNS 208 (330)
T ss_pred --hhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccC
Confidence 12457788999999973 34567899999999999999999999999999999999999999988888774 46
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
+.||+++|||+..+.++||+|-||--|..
T Consensus 209 ~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 209 NTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred CceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 89999999999999999999999977753
No 408
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=7.5e-25 Score=218.48 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=68.0
Q ss_pred CCCCCCCChHHHHHHHHHHHhccC----CCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQD----PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~----p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
++++.+||||||||++||++++.+ |+++||||||++||+....++.+.+.+ .|.|+|+||||.+++ .+||++
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i 228 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADAL 228 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeE
Confidence 455689999999999999999864 999999999999999999998887754 378999999998887 579999
Q ss_pred EEecC
Q 008750 327 VETEM 331 (555)
Q Consensus 327 ~~l~~ 331 (555)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 99864
No 409
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.91 E-value=2.3e-24 Score=215.99 Aligned_cols=132 Identities=30% Similarity=0.433 Sum_probs=113.3
Q ss_pred CCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEec
Q 008750 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q 495 (555)
.++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.++ .++|++|
T Consensus 9 ~~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 9 QGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 35679999999999888899999999999999999999999999999999999999999999987543 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..||.+++...........+..+|..+++. +..++++..|||||||||+||
T Consensus 89 ~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~la 145 (257)
T PRK11247 89 DA--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALA 145 (257)
T ss_pred Cc--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 85 3656789999997543222235678899999995 467899999999999999986
No 410
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.91 E-value=1.3e-23 Score=220.79 Aligned_cols=209 Identities=19% Similarity=0.329 Sum_probs=154.4
Q ss_pred CCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--ceEEEEec
Q 008750 93 SISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--MKIAFLSQ 168 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--~~ig~v~Q 168 (555)
+.+..|++++|++.-+. ..+++|+||+|..|+.+.|.||||||||+|+|+|+|+-+..+|++...... ..+-||||
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQ 508 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQ 508 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecC
Confidence 44578999999998865 457889999999999999999999999999999999999999999865433 56899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc-C
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-G 247 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-g 247 (555)
.|++ ...|+++-+..+...... ......| +.+.++++.. +...+++.. |
T Consensus 509 rPYm-t~GTLRdQvIYP~~~~~~-----------~~~~~~d-~~i~r~Le~v-----------------~L~hl~~r~gg 558 (659)
T KOG0060|consen 509 RPYM-TLGTLRDQVIYPLKAEDM-----------DSKSASD-EDILRILENV-----------------QLGHLLEREGG 558 (659)
T ss_pred CCCc-cccchhheeeccCccccc-----------cccCCCH-HHHHHHHHHh-----------------hhhhHHHHhCC
Confidence 9987 455999876544221100 0011111 1111111110 111112221 2
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeE
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
++......=...||+||+||+++||.+..+|++-||||.||++|.+.+..+.+.+++.|.|.|-|+|+.++.. +-|.++
T Consensus 559 ld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fHd~~L 637 (659)
T KOG0060|consen 559 LDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FHDYVL 637 (659)
T ss_pred CCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hhhEEE
Confidence 2110001112479999999999999999999999999999999999999999999999999999999999885 678888
Q ss_pred EecCC
Q 008750 328 ETEMG 332 (555)
Q Consensus 328 ~l~~G 332 (555)
.|+.+
T Consensus 638 ~~~g~ 642 (659)
T KOG0060|consen 638 RMDGR 642 (659)
T ss_pred EecCC
Confidence 88764
No 411
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.3e-24 Score=206.82 Aligned_cols=130 Identities=32% Similarity=0.412 Sum_probs=112.4
Q ss_pred ceEEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008750 423 SVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------- 488 (555)
..|+++|+++.| +++.++++|||+|.+||+|+|+|++|||||||||+|.|+..|++|+|.+++..+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 468999999999 567899999999999999999999999999999999999999999999998544
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc--------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhc
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~L 554 (555)
.+||++|++ .|-+..||++|+....- ......+...|.++|+. +.+.++...|||||+|||+|
T Consensus 82 ~iGmIfQ~~--nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQF--NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccC--CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHH
Confidence 368999985 57799999999975421 11223577889999995 67899999999999999998
Q ss_pred C
Q 008750 555 V 555 (555)
Q Consensus 555 a 555 (555)
|
T Consensus 159 A 159 (258)
T COG3638 159 A 159 (258)
T ss_pred H
Confidence 6
No 412
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.1e-25 Score=216.05 Aligned_cols=128 Identities=30% Similarity=0.449 Sum_probs=112.1
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---ee--------eeEEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV--------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~---~~--------~~~y~ 493 (555)
|+++++++.|+...+++++||+|+.||.+|+.||||||||||||+|+|++.|++|.|.+++. +. ++||+
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 67889999999888999999999999999999999999999999999999999999999987 33 47999
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc------c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE------D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~------~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|+. .+++..||.+|++...+ . .....+.++|..+.+. ...+++|..|||||||||+||
T Consensus 83 FQ~Y--ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALA 149 (345)
T COG1118 83 FQHY--ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALA 149 (345)
T ss_pred Eech--hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHH
Confidence 9985 48899999999987652 1 1224577789999985 478999999999999999986
No 413
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.91 E-value=7.3e-25 Score=201.69 Aligned_cols=128 Identities=31% Similarity=0.430 Sum_probs=111.6
Q ss_pred EEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
|+++||++.|++ +++|+++||+|.+||.+-|+||+|+|||||||+|++.++|++|.|++++.++ .+
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 789999999975 4599999999999999999999999999999999999999999999998876 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|+++|+. -|-+++||+||++.+.. .. ....+...|...|+. +....-|..|||||||||+||
T Consensus 82 GvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 82 GVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred eeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHH
Confidence 8999985 46689999999987643 12 234577899999996 467888999999999999987
No 414
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.91 E-value=3.2e-24 Score=209.61 Aligned_cols=128 Identities=26% Similarity=0.415 Sum_probs=108.7
Q ss_pred EEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------e
Q 008750 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------L 489 (555)
Q Consensus 425 l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~ 489 (555)
|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964 4699999999999999999999999999999999999999999999988644 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcc--c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .+.+..||.+++..... . .....+..++..+++. +..++++..|||||||||+||
T Consensus 82 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDH--RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCc--cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 68999985 46677899999975421 1 1234578899999995 567899999999999999986
No 415
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.6e-24 Score=209.81 Aligned_cols=128 Identities=34% Similarity=0.497 Sum_probs=108.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 4689999999888899999999999999999999999999999999999999999999987654 36899998
Q ss_pred CccCCCCCCCHHHHHHhhccc--C----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~--~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+.+..|+.+++...... . ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la 142 (213)
T cd03259 81 Y--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALA 142 (213)
T ss_pred h--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHH
Confidence 5 366778999999754221 1 123577899999996 567899999999999999986
No 416
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.5e-24 Score=211.27 Aligned_cols=128 Identities=34% Similarity=0.460 Sum_probs=108.2
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eeE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPN 491 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~~ 491 (555)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 4789999999887899999999999999999999999999999999999999999999987543 267
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc---cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+.+..||.+++..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 81 ~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 81 MLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred EEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHH
Confidence 999985 46677899999975421 111 23467789999995 467899999999999999986
No 417
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.4e-24 Score=210.01 Aligned_cols=128 Identities=28% Similarity=0.396 Sum_probs=109.1
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 4789999999888899999999999999999999999999999999999999999999987543 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..||.+++..... .. ....+..+|..+++. +..++++..|||||||||+||
T Consensus 81 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la 143 (220)
T cd03265 81 DL--SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIA 143 (220)
T ss_pred Cc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHH
Confidence 85 36677899999965321 11 123578899999995 567899999999999999986
No 418
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.8e-24 Score=223.69 Aligned_cols=129 Identities=28% Similarity=0.431 Sum_probs=112.9
Q ss_pred eEEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEe
Q 008750 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFE 494 (555)
Q Consensus 424 ~l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~ 494 (555)
.|+++|+++.| ++..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 48899999999 677899999999999999999999999999999999999999999999998755 378999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++ .+++..||.+|+..... ... ...+..+|..+++. +.++++|..|||||||||+||
T Consensus 83 Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 83 QNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMG 146 (356)
T ss_pred CCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHH
Confidence 985 57889999999986532 111 24577899999995 578999999999999999986
No 419
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.91 E-value=5.7e-24 Score=222.17 Aligned_cols=129 Identities=26% Similarity=0.422 Sum_probs=113.5
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 58999999999987899999999999999999999999999999999999999999999998655 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+...... .....+..++..+++. +.+++++..|||||||||+||
T Consensus 84 ~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 84 SY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALA 146 (353)
T ss_pred Cc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHH
Confidence 85 577899999999865321 1234678899999996 578999999999999999986
No 420
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.1e-24 Score=222.19 Aligned_cols=131 Identities=30% Similarity=0.489 Sum_probs=114.2
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~ 493 (555)
...|+++|+++.|++..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 3479999999999888899999999999999999999999999999999999999999999998654 36899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.+|+..... . .....+..++..+++. +..++++..|||||||||+||
T Consensus 84 fQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 84 FQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALA 148 (351)
T ss_pred eCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHH
Confidence 9985 57889999999986532 1 1134678899999996 477999999999999999986
No 421
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.4e-24 Score=212.43 Aligned_cols=128 Identities=31% Similarity=0.417 Sum_probs=112.1
Q ss_pred EEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 425 l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
|+++++++.|.. ..+++++||+|++||+.+|+|.+|+|||||+|+|-++.+|++|.|.++|.++
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 789999999975 3689999999999999999999999999999999999999999999999665
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|+++|+. .|..++||.+|++...+ .+ ....+..+|...|++ |..++.|.+|||||||||+||
T Consensus 82 R~~IGMIFQhF--nLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIA 153 (339)
T COG1135 82 RQKIGMIFQHF--NLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIA 153 (339)
T ss_pred HhhccEEeccc--cccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHH
Confidence 378999985 46678999999987543 12 234578899999997 789999999999999999986
No 422
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=3.5e-24 Score=207.68 Aligned_cols=128 Identities=27% Similarity=0.433 Sum_probs=108.2
Q ss_pred EEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeEEEecCC
Q 008750 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQ 497 (555)
Q Consensus 426 ~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~y~~Q~~ 497 (555)
+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36799999987 7899999999999999999999999999999999999999999999998664 478999985
Q ss_pred ccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 498 AEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
...+ ...|+.+++..... ......+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 138 (205)
T cd03226 81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIA 138 (205)
T ss_pred hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHH
Confidence 3223 35699999975432 12235688899999996 467899999999999999986
No 423
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.91 E-value=7.1e-24 Score=205.92 Aligned_cols=128 Identities=26% Similarity=0.389 Sum_probs=110.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4789999999888899999999999999999999999999999999999999999999998754 36799998
Q ss_pred CccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+.+..||.+++..... ......+..+|..+++. +..++++..|||||||||+||
T Consensus 81 ~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 138 (208)
T cd03268 81 P--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIA 138 (208)
T ss_pred C--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHH
Confidence 5 46678899999875432 22345678889999995 467899999999999999885
No 424
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.7e-24 Score=206.91 Aligned_cols=128 Identities=23% Similarity=0.455 Sum_probs=109.3
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------eeEEEecCCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQA 498 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------~~~y~~Q~~~ 498 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~- 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER- 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC-
Confidence 4789999999887899999999999999999999999999999999999999999999998654 378999985
Q ss_pred cCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 499 EALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 499 ~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+.+..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 80 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 80 -GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred -cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHH
Confidence 46677899999875421 11 134577889999996 567899999999999999885
No 425
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.3e-24 Score=207.68 Aligned_cols=128 Identities=34% Similarity=0.494 Sum_probs=109.0
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEec
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q 495 (555)
|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 468999999987 6799999999999999999999999999999999999999999999988654 4689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la 143 (220)
T cd03293 81 QD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALA 143 (220)
T ss_pred cc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHH
Confidence 85 36667899999875421 11 124578899999995 567899999999999999986
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=6.7e-24 Score=207.56 Aligned_cols=128 Identities=34% Similarity=0.490 Sum_probs=108.0
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 468999999976 6799999999999999999999999999999999999999999999987532
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.+++..... .. ....+..++..+++. +.+++++..|||||||||+||
T Consensus 81 ~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03255 81 RRHIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIA 152 (218)
T ss_pred hhcEEEEeecc--ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHH
Confidence 368999985 36677899999876422 11 123577899999996 467899999999999999986
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=7.3e-23 Score=234.24 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=88.8
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc---CCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEE
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ---DPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~---~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIi 311 (555)
+..++|..+||.....++++.+|||||+||+.||++|+. +|+++||||||++||+..+..|.++|+ +.|.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 445788899996445688999999999999999999997 599999999999999999999888775 35899999
Q ss_pred EecCHHHHHhhcceeEEe------cCCeEeeccCChHH
Q 008750 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQ 343 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~ 343 (555)
|||+++++. .||+|++| ++|++ ++.|..++
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~i-v~~G~~~~ 922 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTI-VASGTPEE 922 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEE-EEeCCHHH
Confidence 999999995 69999999 57776 46676543
No 428
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.90 E-value=4e-24 Score=208.40 Aligned_cols=129 Identities=29% Similarity=0.457 Sum_probs=107.3
Q ss_pred EEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEecCCccC
Q 008750 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAEA 500 (555)
Q Consensus 426 ~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q~~~~~ 500 (555)
+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++...
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 367899999877899999999999999999999999999999999999999999999998643 478999986321
Q ss_pred CCCCCCHHHHHHhhccc----------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 501 LDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 501 l~~~~tv~e~l~~~~~~----------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.....||.+++...... .....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 144 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLA 144 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHH
Confidence 22447999999754321 1124578899999995 578899999999999999986
No 429
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.90 E-value=8.1e-24 Score=206.24 Aligned_cols=128 Identities=30% Similarity=0.486 Sum_probs=108.7
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 4789999999888899999999999999999999999999999999999999999999987654 36899998
Q ss_pred CccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la 142 (213)
T cd03301 81 Y--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALG 142 (213)
T ss_pred h--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHH
Confidence 5 36677899999975421 11 123567889999995 567999999999999999886
No 430
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.90 E-value=1.3e-23 Score=220.79 Aligned_cols=131 Identities=28% Similarity=0.491 Sum_probs=114.4
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~ 493 (555)
.+.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|+
T Consensus 12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred CceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4579999999999887899999999999999999999999999999999999999999999998765 27899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.+|+..... ... ...+..++..+++. +..+++|..|||||||||+||
T Consensus 92 fQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 92 FQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred ecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 9985 58899999999986532 111 23577889999996 578999999999999999986
No 431
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.3e-23 Score=207.77 Aligned_cols=130 Identities=28% Similarity=0.402 Sum_probs=109.7
Q ss_pred ceEEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
+.++++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 46899999999974 4699999999999999999999999999999999999999999999988543
Q ss_pred ----eeEEEecCCccCCCCCCCHHHHHHhhcc--c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++..... . .....+..++..+++. +..++++..|||||||||+||
T Consensus 84 ~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 84 LRNQKLGFIYQFH--HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HHhccEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 368999985 46677899999875321 1 1123577899999996 567899999999999999986
No 432
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=9.6e-24 Score=211.49 Aligned_cols=128 Identities=29% Similarity=0.429 Sum_probs=109.6
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEecCCcc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAE 499 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q~~~~ 499 (555)
|+++|+++.|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~-- 79 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE-- 79 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC--
Confidence 6899999999887899999999999999999999999999999999999999999999987654 368999985
Q ss_pred CCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 500 ALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 500 ~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+.+..||.+++..... .. ....+..+|..+++. +..++++..|||||||||+||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~la 140 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIA 140 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHH
Confidence 46677899999975321 11 123578899999996 467899999999999999986
No 433
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.90 E-value=9.6e-24 Score=205.86 Aligned_cols=128 Identities=29% Similarity=0.380 Sum_probs=108.6
Q ss_pred EEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
++++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.++ .+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 68999999994 56799999999999999999999999999999999999999999999987543 25
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..|+.+++..... ......+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 82 GVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred EEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 7999985 36677899999876421 11234578899999996 467899999999999999986
No 434
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.90 E-value=1.4e-23 Score=202.89 Aligned_cols=128 Identities=29% Similarity=0.465 Sum_probs=110.4
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++.++ .++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 4789999999888899999999999999999999999999999999999999999999987654 3678998
Q ss_pred CCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..|+.+++...........+..++..+++. +..++++..||||||||++||
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 137 (201)
T cd03231 81 AP--GIKTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALA 137 (201)
T ss_pred cc--ccCCCcCHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHH
Confidence 75 4667789999997654333455678899999996 457889999999999999986
No 435
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.90 E-value=9.9e-24 Score=218.62 Aligned_cols=134 Identities=22% Similarity=0.381 Sum_probs=114.4
Q ss_pred CceEEEEeeeEEcCC-------------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 422 RSVVTIKNLEFGYED-------------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~-------------~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
+++|+++|+++.|+. ..+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 578999999999962 3589999999999999999999999999999999999999999999988654
Q ss_pred -------------eeEEEecCCccCCCCCCCHHHHHHhhcc----cCc----HHHHHHHHhhCCCChhhhccccCCCChh
Q 008750 489 -------------LPNYFEQNQAEALDLDKTVLETVAEAAE----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (555)
Q Consensus 489 -------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGG 547 (555)
.++|++|++...+++..||.+++..... ... ...+..+|..+++..+.++++++.||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 3689999975568888999999875321 122 2346788999999766789999999999
Q ss_pred HHhchhcC
Q 008750 548 EKVNQTLV 555 (555)
Q Consensus 548 ek~Rv~La 555 (555)
|+|||+||
T Consensus 166 ~~QRv~iA 173 (331)
T PRK15079 166 QCQRIGIA 173 (331)
T ss_pred HHHHHHHH
Confidence 99999986
No 436
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.90 E-value=1.5e-23 Score=211.71 Aligned_cols=131 Identities=31% Similarity=0.446 Sum_probs=110.7
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------- 488 (555)
..+|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 3579999999999888899999999999999999999999999999999999999999999987543
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc---cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+.+..||.+++..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 85 ~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 85 RMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred cEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 267999985 46677899999875321 111 13466789999996 567899999999999999986
No 437
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.9e-23 Score=203.93 Aligned_cols=133 Identities=22% Similarity=0.342 Sum_probs=112.8
Q ss_pred CCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------eEE
Q 008750 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNY 492 (555)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-------~~y 492 (555)
.++++++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ++|
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 3557899999999998878999999999999999999999999999999999999999999999986542 679
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--cC-cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--DW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~-~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 87 ~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 149 (214)
T PRK13543 87 LGHLP--GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALA 149 (214)
T ss_pred eecCc--ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHH
Confidence 99874 46667799999865422 11 234567889999996 467999999999999999985
No 438
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.6e-23 Score=202.98 Aligned_cols=128 Identities=27% Similarity=0.437 Sum_probs=110.2
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 7899999999888899999999999999999999999999999999999999999999988654 2578888
Q ss_pred CCccCCCCCCCHHHHHHhhccc---CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..|+.+++...... .....+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la 141 (204)
T PRK13538 82 QP--GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALA 141 (204)
T ss_pred cc--ccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHH
Confidence 74 466778999999754321 2345678899999995 467899999999999999986
No 439
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.90 E-value=1.5e-23 Score=205.08 Aligned_cols=128 Identities=25% Similarity=0.402 Sum_probs=109.4
Q ss_pred EEEEeeeEEcCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeE
Q 008750 425 VTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPN 491 (555)
Q Consensus 425 l~~~~l~~~y~~~----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~ 491 (555)
++++|+++.|++. .+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 6899999999875 799999999999999999999999999999999999999999999987654 367
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++..||.+++..... .. ....+..++..+++. +.+++++..|||||||||+||
T Consensus 82 ~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 82 FVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHH
Confidence 999986 46677899999865321 11 124577899999995 578999999999999999986
No 440
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.90 E-value=1.4e-23 Score=205.74 Aligned_cols=129 Identities=31% Similarity=0.470 Sum_probs=108.3
Q ss_pred eEEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
+|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999964 4699999999999999999999999999999999999999999999987543
Q ss_pred ---eeEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 153 (221)
T TIGR02211 81 RNKKLGFIYQFH--HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIA 153 (221)
T ss_pred HHhcEEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 368999985 46667899999875321 11 123577899999996 467899999999999999986
No 441
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.5e-23 Score=208.05 Aligned_cols=129 Identities=31% Similarity=0.490 Sum_probs=109.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 37899999999888899999999999999999999999999999999999999999999987543 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----c----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..||.+++..... .. . ...+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 82 HY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALA 148 (239)
T ss_pred CC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHH
Confidence 85 36667899999975421 10 1 23467889999995 567899999999999999986
No 442
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=220.41 Aligned_cols=129 Identities=31% Similarity=0.489 Sum_probs=111.8
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 48899999999888899999999999999999999999999999999999999999999988654 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 83 ~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 83 SY--ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIG 145 (369)
T ss_pred Cc--ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHH
Confidence 85 47788999999975432 111 23577899999995 578999999999999999986
No 443
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.90 E-value=1.9e-23 Score=205.72 Aligned_cols=132 Identities=25% Similarity=0.432 Sum_probs=108.0
Q ss_pred eEEEEeeeEEcCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
+|+++|+++.|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999765 799999999999999999999999999999999999999999999987543
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc----cCcH---HH-HHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE----DWRI---DD-IKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~---~~-~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+.+..||.+++..... .... .. +..++..+++.....++++..|||||||||+||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 3679999863346677899999864321 1111 12 247889999865578899999999999999986
No 444
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.90 E-value=2.3e-23 Score=213.99 Aligned_cols=131 Identities=30% Similarity=0.434 Sum_probs=110.7
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNY 492 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y 492 (555)
+..|+++|+++.|++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 3568999999999888899999999999999999999999999999999999999999999987643 3789
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+.+..||.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 82 v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la 147 (303)
T TIGR01288 82 VPQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLA 147 (303)
T ss_pred Eeccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHH
Confidence 99985 46678899999974321 111 12456788999985 567899999999999999986
No 445
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.90 E-value=1.5e-23 Score=207.66 Aligned_cols=128 Identities=29% Similarity=0.431 Sum_probs=108.3
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y~ 493 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 4689999999887899999999999999999999999999999999999999999999987543 26799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcccC----------------cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAEDW----------------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~~----------------~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.+++....... ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 81 FQIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred eccc--ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHH
Confidence 9985 4667789999987542110 123467889999996 467899999999999999986
No 446
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=4.2e-23 Score=198.91 Aligned_cols=162 Identities=18% Similarity=0.132 Sum_probs=114.8
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc-----eE----EEEcC-CCceEEEEecccccCcCccHHHH
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GN----VIKAK-SNMKIAFLSQEFEVSMSRTVREE 181 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-----G~----I~~~g-~~~~ig~v~Q~~~~~~~~tv~e~ 181 (555)
.++++++++.+| +.+|+|+||||||||+..|.-...... |. +...| ....|.+.+++..+.. |
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------N 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC------C
Confidence 356778888887 889999999999999999985433221 21 01111 1235677777654432 1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCC
Q 008750 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (555)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LS 261 (555)
- .. ......+.++++. ....++++.+||
T Consensus 84 ~--~~----------------------------------------------~~~~~~~~~~l~~----~~~~~~~~~~lS 111 (198)
T cd03276 84 P--LC----------------------------------------------VLSQDMARSFLTS----NKAAVRDVKTLS 111 (198)
T ss_pred c--CC----------------------------------------------HHHHHHHHHHhcc----ccccCCcccccC
Confidence 0 00 0001223334444 234578899999
Q ss_pred hHHHHHHHHHHHh----ccCCCEEEEcCCCCCCCHHHHHHHHHHHcC------CCceEEEEecCHHHHHhhcceeEEecC
Q 008750 262 SGWQMRMSLGKIL----LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 262 GGqrqRv~lAraL----~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~------~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
+|||||++||+|| +.+|+++||||||++||+.....+.++|.+ .+.|||++||+++.+..+ |+|.++..
T Consensus 112 ~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~ 190 (198)
T cd03276 112 GGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRM 190 (198)
T ss_pred hhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEe
Confidence 9999999999999 699999999999999999998888887643 135899999999999875 99999986
Q ss_pred Ce
Q 008750 332 GV 333 (555)
Q Consensus 332 G~ 333 (555)
++
T Consensus 191 ~~ 192 (198)
T cd03276 191 KD 192 (198)
T ss_pred cC
Confidence 54
No 447
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.90 E-value=2.3e-23 Score=206.43 Aligned_cols=128 Identities=30% Similarity=0.480 Sum_probs=109.2
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 7899999999888899999999999999999999999999999999999999999999987654 3679999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..|+.+++..... .. ....+..++..+++. +.+++++..|||||||||+||
T Consensus 82 ~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 82 QP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred CC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHH
Confidence 85 35577899999875421 11 123577889999996 567899999999999999986
No 448
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.7e-23 Score=216.54 Aligned_cols=134 Identities=25% Similarity=0.440 Sum_probs=114.8
Q ss_pred CceEEEEeeeEEcCC----------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---
Q 008750 422 RSVVTIKNLEFGYED----------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~----------~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--- 488 (555)
+++|+++|+++.|+. ..++++|||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 457999999999962 3689999999999999999999999999999999999999999999998654
Q ss_pred ----------eeEEEecCCccCCCCCCCHHHHHHhhcc---cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhc
Q 008750 489 ----------LPNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVN 551 (555)
Q Consensus 489 ----------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~R 551 (555)
.++|++|++...+++..++.+++..... .. ....+..+|..+++..+.++++++.||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 3689999986678899999998864321 11 124578899999997667899999999999999
Q ss_pred hhcC
Q 008750 552 QTLV 555 (555)
Q Consensus 552 v~La 555 (555)
|+||
T Consensus 163 v~iA 166 (327)
T PRK11308 163 IAIA 166 (327)
T ss_pred HHHH
Confidence 9986
No 449
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-23 Score=219.50 Aligned_cols=131 Identities=30% Similarity=0.512 Sum_probs=114.5
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~ 493 (555)
...|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 5679999999999887899999999999999999999999999999999999999999999998755 37899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.||+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 97 fQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 97 FQSY--ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred eCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHH
Confidence 9985 48899999999986532 111 23577889999995 578999999999999999986
No 450
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.4e-23 Score=199.93 Aligned_cols=131 Identities=28% Similarity=0.446 Sum_probs=110.9
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------eE
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-----------~~ 491 (555)
+.++++|++..|+...++++|||++.+||+++|+|+||+|||||||+|+|+.+|.+|+|.|+|.++. ++
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4689999999999989999999999999999999999999999999999999999999999998773 57
Q ss_pred EEecCCccCCCCCCCHHHHHHhhccc-----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~-----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|+||-. .++++.||.||+...... ....++...+..|---.+..+++...|||||||.|++|
T Consensus 82 ~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 82 YVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred eCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 999973 588999999999865321 11112445666665446788999999999999999875
No 451
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.90 E-value=1.8e-23 Score=218.33 Aligned_cols=129 Identities=29% Similarity=0.439 Sum_probs=112.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 37899999999888899999999999999999999999999999999999999999999998755 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcc------cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE------DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~------~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 82 ~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 82 HY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALA 148 (353)
T ss_pred Cc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 85 57788999999986532 111 23577899999995 578999999999999999986
No 452
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.90 E-value=2.4e-23 Score=200.78 Aligned_cols=128 Identities=27% Similarity=0.419 Sum_probs=108.8
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 4789999999888899999999999999999999999999999999999999999999988653 3578898
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+. .+++..|+.+++..... ......+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 139 (198)
T TIGR01189 81 LP--GLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALA 139 (198)
T ss_pred Cc--ccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHHH
Confidence 74 46677899999875432 11234578889999996 467899999999999999986
No 453
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.8e-23 Score=207.54 Aligned_cols=128 Identities=29% Similarity=0.421 Sum_probs=108.0
Q ss_pred EEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999986 7899999999999999999999999999999999999999999999987543 26
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..||.+++..... ....+.+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 81 GMIFQQF--NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred EEEcccC--cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHH
Confidence 7999985 46677899999964321 11234577889999995 567899999999999999986
No 454
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.90 E-value=2.6e-23 Score=204.85 Aligned_cols=130 Identities=30% Similarity=0.407 Sum_probs=109.6
Q ss_pred ceEEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
+.|+++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 57899999999975 2589999999999999999999999999999999999999999999987543
Q ss_pred ----eeEEEecCCccCCCCCCCHHHHHHhhc--cc----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ----LPNYFEQNQAEALDLDKTVLETVAEAA--ED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~--~~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+.+..|+.+++.... .. .....+..+|..+++. +..++++..|||||||||+||
T Consensus 85 ~~~~~i~~~~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 85 LRAKHVGFVFQSF--MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHhheEEEEEccc--ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHH
Confidence 368999985 4667789999987532 11 1134678899999996 567899999999999999986
No 455
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.90 E-value=2.7e-23 Score=204.47 Aligned_cols=131 Identities=27% Similarity=0.437 Sum_probs=110.1
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~ 491 (555)
+++|+++|+++.|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.++ .++
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4579999999999888899999999999999999999999999999999999999999999998643 367
Q ss_pred EEecCCccCCCCCCCHHHHHHhhc---c-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAA---E-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~---~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++ .|+.+++.... . ......+..+|..+++.....++++..|||||+|||+||
T Consensus 85 ~~~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 85 YCAQTP--TLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred EEeccc--cccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence 999985 2444 59999986421 1 112345678999999965567899999999999999986
No 456
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.90 E-value=1.8e-23 Score=203.75 Aligned_cols=128 Identities=31% Similarity=0.428 Sum_probs=108.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNY 492 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~y 492 (555)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4689999999887899999999999999999999999999999999999999999999988654 2579
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc---cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+.+..|+.+++..... .. ....+..++..+++. ..+++++..|||||||||+||
T Consensus 81 ~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 81 VFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred Eeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHH
Confidence 99985 36677899999875321 11 123567889999996 467999999999999999986
No 457
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.90 E-value=1.7e-23 Score=208.14 Aligned_cols=128 Identities=31% Similarity=0.416 Sum_probs=108.4
Q ss_pred EEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
++++|+++.|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 68999999998 67799999999999999999999999999999999999999999999987553 26
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+.+..||.+++..... ......+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 82 GMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred EEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 8999985 36677899999964211 11123577889999995 567899999999999999986
No 458
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=2.4e-23 Score=216.15 Aligned_cols=128 Identities=27% Similarity=0.376 Sum_probs=109.6
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999952 3699999999999999999999999999999999999999999999998654
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+.+..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 82 ~~Ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 368999985 46678899999976432 122 23467889999995 578999999999999999986
No 459
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.90 E-value=3.8e-23 Score=212.38 Aligned_cols=131 Identities=31% Similarity=0.454 Sum_probs=112.2
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNY 492 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y 492 (555)
...++++|+++.|++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 3478999999999988899999999999999999999999999999999999999999999988654 3789
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+++..||.|++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 85 v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 150 (306)
T PRK13537 85 VPQFD--NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLA 150 (306)
T ss_pred EeccC--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHH
Confidence 99985 47778999999975332 111 23466788999995 567899999999999999986
No 460
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3e-23 Score=212.86 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=108.6
Q ss_pred eEEEEeeeEEcCCc-----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 424 VVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~-----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
.|+++|+++.|++. .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 47899999999753 599999999999999999999999999999999999999999999975321
Q ss_pred ------------------------eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhc
Q 008750 489 ------------------------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLD 538 (555)
Q Consensus 489 ------------------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~ 538 (555)
.++|++|++...++ ..||.+++..... ... ...+..++..+++..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 25899998643443 4699999975321 111 2457889999999766789
Q ss_pred cccCCCChhHHhchhcC
Q 008750 539 RKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 539 ~~~~~LSGGek~Rv~La 555 (555)
+++..|||||||||+||
T Consensus 161 ~~~~~LSgGqkqrvalA 177 (305)
T PRK13651 161 RSPFELSGGQKRRVALA 177 (305)
T ss_pred CChhhCCHHHHHHHHHH
Confidence 99999999999999986
No 461
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=7.4e-24 Score=240.93 Aligned_cols=208 Identities=24% Similarity=0.309 Sum_probs=162.3
Q ss_pred EEEEeEEEEe----CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--CCceEEEEcCCCc-------eEE
Q 008750 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVIKAKSNM-------KIA 164 (555)
Q Consensus 98 i~l~nls~~y----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~~~g~~~-------~ig 164 (555)
....|+.+.- +.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. -.+|.|.++|.+. .+|
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G 867 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG 867 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc
Confidence 3445555444 23579999999999999999999999999999999999854 2578999998653 489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
||.|+..-.+..||+|-+.... .+ +....++..+..+.++++++
T Consensus 868 YvqQ~DiH~~~~TVrESL~fSA---------------~L---------------------Rlp~~v~~~ek~~yVe~Vi~ 911 (1391)
T KOG0065|consen 868 YVEQQDIHSPELTVRESLRFSA---------------AL---------------------RLPKEVSDEEKYEYVEEVIE 911 (1391)
T ss_pred eeecccccCcccchHHHHHHHH---------------HH---------------------cCCCcCCHHHHHHHHHHHHH
Confidence 9999876668899999764210 01 11112344445567888888
Q ss_pred hcCCCccccCCCCCC----CChHHHHHHHHHHHhccCC-CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCH
Q 008750 245 ELGFTADDGDRLVAS----FSSGWQMRMSLGKILLQDP-DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~----LSGGqrqRv~lAraL~~~p-~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~ 316 (555)
.++|+ ...+.-+.. ||..||+|+.||--|+.+| .||+|||||||||.++...+.+.++ +.|.|||.+=|.+
T Consensus 912 lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQP 990 (1391)
T KOG0065|consen 912 LLELK-EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQP 990 (1391)
T ss_pred HhCch-hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 88886 344555555 9999999999999999999 8999999999999999888877765 4799999999998
Q ss_pred H-HHHhhcceeEEecCCeEeeccCChH
Q 008750 317 A-FLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 317 ~-~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
+ .+-+--|+++.|+.|.-.+|.|+..
T Consensus 991 S~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 991 SIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred cHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 5 3455689999999888778877543
No 462
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.90 E-value=2.1e-23 Score=204.39 Aligned_cols=128 Identities=27% Similarity=0.394 Sum_probs=108.3
Q ss_pred EEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEE
Q 008750 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~ 493 (555)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 478999999986 6899999999999999999999999999999999999999999999988654 26899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..|+.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 81 PQFD--ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLA 145 (220)
T ss_pred cCcC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHH
Confidence 9985 46677899999875421 111 23567889999995 567899999999999999986
No 463
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.89 E-value=4.2e-23 Score=207.29 Aligned_cols=133 Identities=20% Similarity=0.282 Sum_probs=111.3
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-----e---------
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~-----~--------- 488 (555)
.+|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 46899999999988889999999999999999999999999999999999999999999998865 2
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhc---c--c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA---E--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~--~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+.+..|+.+++.... . . .....+..++..+++..+.+++++..|||||||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 268999987545667778888875421 1 1 11235677899999965568899999999999999986
No 464
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.89 E-value=7.1e-23 Score=190.27 Aligned_cols=193 Identities=24% Similarity=0.282 Sum_probs=148.7
Q ss_pred CccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
...|++.|+.|+|.. .|++-|+|++++.|.+..+||.||||||||||+|+|-.-.-.|.|.+.|... ..
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 345999999999964 5899999999999999999999999999999999998877779998877532 12
Q ss_pred EEEecc----------cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc
Q 008750 164 AFLSQE----------FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (555)
Q Consensus 164 g~v~Q~----------~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
.|+--+ ..++...++..-+ ..++..
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mi---------------------------------------------fgV~g~ 125 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMI---------------------------------------------FGVGGD 125 (291)
T ss_pred eEecccccccccccccccccccccHHHHH---------------------------------------------hhccCC
Confidence 333221 1111111111111 012222
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceE
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPM 309 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tv 309 (555)
.. .+-+.+++-++++-. =.++.+|-|||+||.||.-|+..=++|||||-|-.||+-++..|.+++++ .|.||
T Consensus 126 dp-~Rre~LI~iLDIdl~---WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatI 201 (291)
T KOG2355|consen 126 DP-ERREKLIDILDIDLR---WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATI 201 (291)
T ss_pred Ch-hHhhhhhhheeccce---EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEE
Confidence 22 444556666666422 23568999999999999999999999999999999999999999999863 69999
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEee
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
|..||-.+=++.+.++++.+..|++..
T Consensus 202 VYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 202 VYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999999999999999999743
No 465
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.1e-23 Score=209.04 Aligned_cols=132 Identities=30% Similarity=0.417 Sum_probs=112.0
Q ss_pred CCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
.++.|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 8 ~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 45679999999999887899999999999999999999999999999999999999999999988654 26
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc----------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~----------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+.+..|+.+++..... ......+..+|..+++. +..++++..|||||||||+||
T Consensus 88 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 88 AYLPQQL--PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred EEeccCC--CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHH
Confidence 8999975 35567899999975321 01123577899999995 578999999999999999986
No 466
>PRK10908 cell division protein FtsE; Provisional
Probab=99.89 E-value=3e-23 Score=203.63 Aligned_cols=128 Identities=27% Similarity=0.420 Sum_probs=108.1
Q ss_pred EEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
|+++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 6899999999 567799999999999999999999999999999999999999999999987643 25
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+.+..|+.+++..... ... ...+..+|..+++. +.+++++..|||||||||+||
T Consensus 82 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 82 GMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred EEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHH
Confidence 7999985 35577899999975421 111 23467889999996 467899999999999999986
No 467
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.4e-23 Score=212.41 Aligned_cols=130 Identities=27% Similarity=0.384 Sum_probs=108.9
Q ss_pred EEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 425 l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
++++|+++.|++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999974 4699999999999999999999999999999999999999999999998654
Q ss_pred ---eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...++ ..||.+++..... ... ...+..+|..+++..+..++++..|||||||||+||
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 26899998643454 4699999975422 111 235678899999975667899999999999999986
No 468
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=4.8e-23 Score=198.94 Aligned_cols=128 Identities=27% Similarity=0.430 Sum_probs=109.2
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 6899999999888899999999999999999999999999999999999999999999998654 2578898
Q ss_pred CCccCCCCCCCHHHHHHhhcc-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+++..... ......+..++..+++. +..++++..|||||+|||+||
T Consensus 82 ~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~la 139 (200)
T PRK13540 82 RS--GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVALL 139 (200)
T ss_pred cc--ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHHH
Confidence 74 46678899999875421 11234578899999985 467889999999999999986
No 469
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.89 E-value=2.9e-23 Score=202.39 Aligned_cols=128 Identities=29% Similarity=0.360 Sum_probs=107.7
Q ss_pred EEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964 5799999999999999999999999999999999999999999999987643 26
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~v~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 81 GVVFQDF--RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred EEEecCc--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHH
Confidence 7999985 46677899999976431 11 123567889999995 467899999999999999986
No 470
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.7e-23 Score=206.64 Aligned_cols=129 Identities=29% Similarity=0.460 Sum_probs=109.2
Q ss_pred EEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999987 7799999999999999999999999999999999999999999999987643 25799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..|+.+++..... .. ....+..++..+++.. +..++++..|||||||||+||
T Consensus 81 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 81 IQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred ccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHH
Confidence 9985 46677899999975421 11 1235778899999974 467899999999999999986
No 471
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.1e-23 Score=206.19 Aligned_cols=129 Identities=26% Similarity=0.351 Sum_probs=109.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------------
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------- 488 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 37899999999888899999999999999999999999999999999999999999999987643
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhc---ccC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAA---EDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++.... ... ....+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~i~~~~q~~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 82 RNVGMVFQQY--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hheEEEecCc--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 267999985 4667789999986421 111 123577889999995 568999999999999999986
No 472
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=2.8e-23 Score=202.17 Aligned_cols=128 Identities=37% Similarity=0.512 Sum_probs=106.2
Q ss_pred EEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 426 ~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.++ .++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 7799999999999999999999999999999999999999999999987644 25799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++. ...+..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~q~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 146 (211)
T cd03225 81 FQNPD-DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIA 146 (211)
T ss_pred ecChh-hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 99852 22346799999875422 11 123577899999996 567899999999999999986
No 473
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=4.3e-23 Score=215.95 Aligned_cols=128 Identities=28% Similarity=0.418 Sum_probs=111.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEECCcee--------eeEEEe
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNV--------LPNYFE 494 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~--G~v~~~~~~~--------~~~y~~ 494 (555)
|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++ |+|.++|.++ .++|++
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 789999999988789999999999999999999999999999999999999999 9999998654 368999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++ .+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 86 Q~~--~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 86 QNY--ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred CCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHH
Confidence 985 47789999999986532 111 23577889999996 578999999999999999986
No 474
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.2e-23 Score=204.07 Aligned_cols=128 Identities=31% Similarity=0.433 Sum_probs=108.9
Q ss_pred EEEEeeeEEcCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~~----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|+++ .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999876 799999999999999999999999999999999999999999999987653
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHH
Confidence 267999985 46677899999875321 11 123577899999995 567899999999999999986
No 475
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=5.2e-23 Score=206.56 Aligned_cols=129 Identities=32% Similarity=0.442 Sum_probs=109.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
.|+++|+++.|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 47899999999888899999999999999999999999999999999999999999999988643 26799
Q ss_pred ecCCccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..||.+++...... .....+..+|..+++. +..++++..|||||||||+||
T Consensus 82 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la 146 (258)
T PRK13548 82 PQHS--SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLA 146 (258)
T ss_pred ccCC--cCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHH
Confidence 9985 355678999998764221 1123577889999995 567999999999999999986
No 476
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.89 E-value=3.6e-23 Score=204.29 Aligned_cols=128 Identities=30% Similarity=0.502 Sum_probs=108.3
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y~ 493 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 4789999999888899999999999999999999999999999999999999999999987542 26799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..|+.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 145 (232)
T cd03218 81 PQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIA 145 (232)
T ss_pred cCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 9985 46677899999975421 111 23467889999996 567899999999999999986
No 477
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.8e-23 Score=212.04 Aligned_cols=136 Identities=24% Similarity=0.282 Sum_probs=111.4
Q ss_pred CCCCceEEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----
Q 008750 419 RSGRSVVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----- 488 (555)
Q Consensus 419 ~~~~~~l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----- 488 (555)
.+++++|+++|+++.|++ ..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 345678999999999974 3599999999999999999999999999999999999999999999986332
Q ss_pred ---------------------eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhcccc
Q 008750 489 ---------------------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKV 541 (555)
Q Consensus 489 ---------------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~ 541 (555)
.++|++|++...+.. .||.+++..... ... ...+..++..+++..+..++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 257999986434544 599999965421 111 2346778999999655789999
Q ss_pred CCCChhHHhchhcC
Q 008750 542 SLLSGGEKVNQTLV 555 (555)
Q Consensus 542 ~~LSGGek~Rv~La 555 (555)
..|||||||||+||
T Consensus 175 ~~LSgGqkqRvaiA 188 (320)
T PRK13631 175 FGLSGGQKRRVAIA 188 (320)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999999999986
No 478
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=5.7e-23 Score=213.55 Aligned_cols=132 Identities=30% Similarity=0.417 Sum_probs=112.7
Q ss_pred CCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeE
Q 008750 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPN 491 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~ 491 (555)
+.++|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 45689999999999988899999999999999999999999999999999999999999999998654 378
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++..||.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 118 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 118 VVPQFD--NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEeCCc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHH
Confidence 999985 46678899999975321 111 12456789999996 568999999999999999986
No 479
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.5e-23 Score=204.96 Aligned_cols=129 Identities=25% Similarity=0.358 Sum_probs=109.3
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++ .++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 37899999999887899999999999999999999999999999999999999999999988653 36799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++. +.. .|+.+++..... ......+..++..+++..+..++++..|||||||||+||
T Consensus 83 ~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 83 FQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred ecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 99852 433 599999875321 222346788999999965577899999999999999986
No 480
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.4e-23 Score=210.97 Aligned_cols=131 Identities=24% Similarity=0.336 Sum_probs=108.9
Q ss_pred eEEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
.++++|+++.|++ +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3789999999963 3599999999999999999999999999999999999999999999998654
Q ss_pred ----eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...++. .||.+++..... ... ...+..+|..+|+..+..++++..|||||||||+||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 258999986434543 599999975421 111 235678899999965677899999999999999986
No 481
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.5e-23 Score=209.52 Aligned_cols=131 Identities=26% Similarity=0.405 Sum_probs=108.5
Q ss_pred eEEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
.|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3789999999974 3699999999999999999999999999999999999999999999988554
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+ ...||.+++..... ... ...+..+|..+++.. +..++++..|||||||||+||
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA 156 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH
Confidence 2589999863333 35699999975321 111 235678999999962 468899999999999999986
No 482
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.2e-23 Score=210.45 Aligned_cols=130 Identities=25% Similarity=0.363 Sum_probs=108.4
Q ss_pred EEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 425 l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
|+++|+++.|+. +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999973 2489999999999999999999999999999999999999999999998654
Q ss_pred ---eeEEEecCCccCCCCCCCHHHHHHhhccc--Cc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+. ..||.+++...... .. ...+..+|..+++..+..++++..|||||||||+||
T Consensus 82 ~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 82 VRKKVGVVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHhhEEEEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 25899998643454 35999999754321 11 234678899999965577899999999999999986
No 483
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.89 E-value=3.3e-23 Score=203.13 Aligned_cols=128 Identities=28% Similarity=0.430 Sum_probs=106.4
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y~ 493 (555)
|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 4789999999887899999999999999999999999999999999999999999999987543 26799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcccC----cHHHHHHHHhhC-CCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~-~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..|+.+++....... ....+..++..+ ++ .+..++++..|||||||||+||
T Consensus 81 ~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LS~G~~qrv~la 144 (222)
T cd03224 81 PEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL-KERRKQLAGTLSGGEQQMLAIA 144 (222)
T ss_pred cccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh-hhhhhCchhhCCHHHHHHHHHH
Confidence 9985 4667789999997643211 123456677777 45 4567899999999999999986
No 484
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=6.5e-23 Score=199.14 Aligned_cols=129 Identities=29% Similarity=0.405 Sum_probs=109.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeEEEecC
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQN 496 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~y~~Q~ 496 (555)
.|+++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ ..+|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 47899999999887899999999999999999999999999999999999999999999988653 25788876
Q ss_pred CccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+.+..|+.+++..... ......+..++..+++.. ..++++..|||||||||+||
T Consensus 82 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la 139 (207)
T PRK13539 82 N--AMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVALA 139 (207)
T ss_pred C--cCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHHH
Confidence 4 35677899999865321 223456888999999964 67899999999999999885
No 485
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=4.9e-23 Score=204.52 Aligned_cols=128 Identities=27% Similarity=0.366 Sum_probs=108.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNY 492 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~y 492 (555)
++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 6899999999887899999999999999999999999999999999999999999999988653 2579
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc---cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+.+..||.+++..... .. ....+..++..+++. +.+++++..|||||||||+||
T Consensus 82 ~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 82 VFQQF--YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred Eeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHH
Confidence 99985 46677899999965321 11 123567899999995 567999999999999999986
No 486
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.89 E-value=4.6e-23 Score=202.96 Aligned_cols=127 Identities=29% Similarity=0.457 Sum_probs=105.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEECCcee-----------
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~-----~p~~G~v~~~~~~~----------- 488 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|++ +|++|+|.++|.++
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 47899999998888999999999999999999999999999999999999 99999999988643
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc--cC-----cHHHHHHHHhhCCCChhhhccc--cCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DW-----RIDDIKGLLGRCNFKADMLDRK--VSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~-----~~~~~~~~L~~~~~~~~~~~~~--~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+. ..||.+++..... .. ....+..++..+++.. ..+++ +..|||||||||+||
T Consensus 81 ~~i~~~~q~~--~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 81 RRVGMVFQKP--NPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred hhEEEEecCc--hhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHHHHHHHH
Confidence 267999985 344 6899999975321 11 1245778899999964 45556 599999999999986
No 487
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.89 E-value=5.4e-23 Score=207.53 Aligned_cols=133 Identities=25% Similarity=0.385 Sum_probs=110.0
Q ss_pred ceEEEEeeeEEcCC---------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----
Q 008750 423 SVVTIKNLEFGYED---------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~---------~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----- 488 (555)
+.|+++|+++.|+. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46899999999962 4699999999999999999999999999999999999999999999987543
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhcc---cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+.+..|+.+++..... .. ..+.+..+|..+++..+..++++..|||||||||+||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 2679999864345677799888764211 11 1235778999999965677889999999999999986
No 488
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.89 E-value=6.4e-23 Score=205.27 Aligned_cols=133 Identities=19% Similarity=0.246 Sum_probs=110.1
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-----e---------
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~-----~--------- 488 (555)
+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 46899999999987779999999999999999999999999999999999999999999998754 2
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhc---c--c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA---E--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~--~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+.+..|+.+++.... . . .....+..++..+++..+.+++++..|||||||||+||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 268999986434556678888875321 1 1 11346778999999965578999999999999999986
No 489
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.9e-23 Score=205.76 Aligned_cols=131 Identities=25% Similarity=0.392 Sum_probs=110.3
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------ee
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~ 490 (555)
+.+++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred CceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 3479999999999888899999999999999999999999999999999999999999999988643 25
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc------------------cC---cHHHHHHHHhhCCCChhhhccccCCCChhHH
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE------------------DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------------------~~---~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek 549 (555)
+|++|++ .+++..||.+++..... .. ....+..++..+++. +..++++..||||||
T Consensus 83 ~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQHV--RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQ 159 (255)
T ss_pred EEeccCc--ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHH
Confidence 6889985 46678899999875311 00 113467788999985 578999999999999
Q ss_pred hchhcC
Q 008750 550 VNQTLV 555 (555)
Q Consensus 550 ~Rv~La 555 (555)
|||+||
T Consensus 160 qrv~la 165 (255)
T PRK11300 160 RRLEIA 165 (255)
T ss_pred HHHHHH
Confidence 999986
No 490
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=4.6e-23 Score=210.14 Aligned_cols=129 Identities=33% Similarity=0.486 Sum_probs=113.4
Q ss_pred eEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEE
Q 008750 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~ 493 (555)
.++++|+++.|+ ++.++++|||+|++||++||+||||||||||+|+|+|+.+|++|+|.+.|.+. .+||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 578899999999 68999999999999999999999999999999999999999999999998544 36999
Q ss_pred ecCCccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..||.|++...+.- ...+.+..+|..+++.. ..++++..||+||||||.||
T Consensus 84 ~~~~--~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia 148 (293)
T COG1131 84 PQEP--SLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIA 148 (293)
T ss_pred ccCC--CCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHH
Confidence 9986 388999999999876432 12457889999999986 34888999999999999886
No 491
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.9e-23 Score=213.67 Aligned_cols=128 Identities=30% Similarity=0.408 Sum_probs=109.2
Q ss_pred EEEEeeeEEcC----CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~----~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 35799999999999999999999999999999999999999999999987643
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~ig~v~q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHF--NLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCC--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 368999985 36678899999975421 111 23567889999996 567899999999999999986
No 492
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.5e-23 Score=209.01 Aligned_cols=131 Identities=21% Similarity=0.363 Sum_probs=108.5
Q ss_pred eEEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
.|+++|+++.|++ +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4789999999973 4699999999999999999999999999999999999999999999998643
Q ss_pred ----eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...++ ..||.+++..... ... ...+..+|..+++..+..++++..|||||||||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 25899998633343 4699999974321 111 234678899999965578999999999999999986
No 493
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.89 E-value=6.1e-23 Score=204.02 Aligned_cols=129 Identities=29% Similarity=0.405 Sum_probs=110.0
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNY 492 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y 492 (555)
+|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 57899999999887899999999999999999999999999999999999999999999988643 2679
Q ss_pred EecCCccCCCCCCCHHHHHHhhccc--------------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAED--------------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~--------------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+++..|+.+++...... .....+..++..+++. +..++++..|||||+|||+||
T Consensus 82 ~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 82 KFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred ecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHH
Confidence 99985 466778999998754210 0123577889999996 567899999999999999986
No 494
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.89 E-value=5.3e-23 Score=199.39 Aligned_cols=126 Identities=36% Similarity=0.466 Sum_probs=106.7
Q ss_pred EEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------eeEE
Q 008750 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------LPNY 492 (555)
Q Consensus 427 ~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------~~~y 492 (555)
++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 46899999888899999999999999999999999999999999999999999999988652 3678
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+++..|+.+++..... . .....+..++..+++. +..++++..||||||||++||
T Consensus 81 ~~q~~--~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 81 LFQNF--ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred Eecch--hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHH
Confidence 99985 46677899999875321 1 1234577899999994 567899999999999999986
No 495
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.89 E-value=6.6e-23 Score=204.78 Aligned_cols=129 Identities=29% Similarity=0.447 Sum_probs=108.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------------
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------- 488 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 58999999999887899999999999999999999999999999999999999999999887532
Q ss_pred ---eeEEEecCCccCCCCCCCHHHHHHhhc---ccCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ---LPNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++.... .... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 83 ~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 83 LRQHVGFVFQNF--NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred hhhhEEEEecCc--ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHH
Confidence 257999985 4667789999996431 1111 23467889999996 457899999999999999986
No 496
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.6e-23 Score=194.54 Aligned_cols=128 Identities=33% Similarity=0.458 Sum_probs=110.1
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------eEEEe
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFE 494 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~----------~~y~~ 494 (555)
|+++|++++..++.+++++||++++||++||+||||+|||||||+|+|.+.|++|++.+++.++. .+.++
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlp 81 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcc
Confidence 78999999998899999999999999999999999999999999999999999999999987663 35789
Q ss_pred cCCccCCCCCCCHHHHHHhhcccC------cHHH--HHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAEDW------RIDD--IKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~~~------~~~~--~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|+. .+.+..||.|.+......+ .+++ ++..|++.++.. ...|....|||||||||.||
T Consensus 82 Q~s--~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~-la~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 82 QNS--SLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG-LAGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred cCc--ccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-hhccchhhcCchHHHHHHHH
Confidence 973 5777889999998653211 1333 788999999864 77899999999999999986
No 497
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=8.6e-23 Score=209.48 Aligned_cols=129 Identities=23% Similarity=0.376 Sum_probs=111.3
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEe
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFE 494 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~ 494 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 47899999999888899999999999999999999999999999999999999999999988654 368999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++ .+++..|+.|++..... ... ...+..+|..|++. +..++++..|||||||||+||
T Consensus 82 q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la 145 (301)
T TIGR03522 82 EHN--PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLA 145 (301)
T ss_pred CCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHH
Confidence 985 47778899999975332 111 34578899999996 457899999999999999886
No 498
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.89 E-value=6e-23 Score=206.96 Aligned_cols=132 Identities=27% Similarity=0.465 Sum_probs=110.0
Q ss_pred eEEEEeeeEEcC---------CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------
Q 008750 424 VVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------ 488 (555)
Q Consensus 424 ~l~~~~l~~~y~---------~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------ 488 (555)
+|+++|+++.|+ ++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 478999999995 35799999999999999999999999999999999999999999999987543
Q ss_pred -------eeEEEecCCccCCCCCCCHHHHHHhhcc---c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhc
Q 008750 489 -------LPNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554 (555)
Q Consensus 489 -------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~L 554 (555)
.++|++|++...+.+..||.+++..... . .....+..++..+++.....++++..|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 2689999863346677899999854211 1 1124577899999996556789999999999999998
Q ss_pred C
Q 008750 555 V 555 (555)
Q Consensus 555 a 555 (555)
|
T Consensus 162 a 162 (265)
T TIGR02769 162 A 162 (265)
T ss_pred H
Confidence 6
No 499
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.89 E-value=8e-23 Score=200.72 Aligned_cols=128 Identities=25% Similarity=0.362 Sum_probs=109.8
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------eeEEEecCCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQA 498 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------~~~y~~Q~~~ 498 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|.|.+++.++ .++|++|++
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~- 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP- 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC-
Confidence 4689999999888899999999999999999999999999999999999999999999987643 467999975
Q ss_pred cCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 499 EALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 499 ~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+.+..|+.+++..... ......+..++..+++. +..++++..|||||+|||+||
T Consensus 80 -~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~la 136 (223)
T TIGR03740 80 -PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIA 136 (223)
T ss_pred -CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHH
Confidence 45677899999864321 23355788899999996 467899999999999999885
No 500
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.8e-23 Score=199.93 Aligned_cols=127 Identities=25% Similarity=0.401 Sum_probs=107.4
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
|+++|+++.|+++.+++++||+|.+| +++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 47899999998878999999999999 9999999999999999999999999999999988643 2679999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 80 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 142 (211)
T cd03264 80 EF--GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIA 142 (211)
T ss_pred CC--cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHH
Confidence 86 36677899999875321 11 134577889999996 467899999999999999986
Done!