Query 008750
Match_columns 555
No_of_seqs 425 out of 2751
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw3_A Elongation factor 3A; a 100.0 5E-62 1.7E-66 557.6 34.3 299 96-497 434-745 (986)
2 1yqt_A RNAse L inhibitor; ATP- 100.0 5.5E-62 1.9E-66 534.5 27.7 358 98-555 21-413 (538)
3 3bk7_A ABC transporter ATP-bin 100.0 7.9E-62 2.7E-66 538.7 22.3 359 97-555 83-483 (607)
4 3g5u_A MCG1178, multidrug resi 100.0 2.8E-59 9.5E-64 558.7 42.4 258 49-346 341-613 (1284)
5 4f4c_A Multidrug resistance pr 100.0 5.3E-57 1.8E-61 540.2 39.3 257 48-344 368-639 (1321)
6 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-56 4.4E-61 490.9 26.2 356 101-555 3-397 (538)
7 3j16_B RLI1P; ribosome recycli 100.0 6.4E-55 2.2E-59 482.6 23.3 380 102-555 82-479 (608)
8 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-52 4.2E-57 473.4 22.1 276 109-471 30-369 (670)
9 3tui_C Methionine import ATP-b 100.0 3.7E-49 1.3E-53 409.3 25.8 212 93-345 20-252 (366)
10 3fvq_A Fe(3+) IONS import ATP- 100.0 3.1E-49 1.1E-53 409.7 23.5 209 96-345 3-227 (359)
11 3gfo_A Cobalt import ATP-bindi 100.0 6.3E-49 2.2E-53 395.4 22.1 210 96-346 6-233 (275)
12 2olj_A Amino acid ABC transpor 100.0 1.9E-48 6.6E-53 389.6 25.3 211 95-345 22-247 (263)
13 3rlf_A Maltose/maltodextrin im 100.0 1.1E-48 3.8E-53 408.2 24.2 208 97-345 3-222 (381)
14 1b0u_A Histidine permease; ABC 100.0 1.9E-48 6.4E-53 390.1 24.6 210 96-345 5-241 (262)
15 2pcj_A ABC transporter, lipopr 100.0 2.1E-48 7.2E-53 381.0 24.3 199 96-335 3-218 (224)
16 3tif_A Uncharacterized ABC tra 100.0 1.7E-48 5.7E-53 384.4 22.8 203 97-336 1-225 (235)
17 4g1u_C Hemin import ATP-bindin 100.0 4.8E-48 1.6E-52 387.7 25.1 206 96-344 10-235 (266)
18 1vpl_A ABC transporter, ATP-bi 100.0 6.1E-48 2.1E-52 384.7 25.0 210 95-345 13-234 (256)
19 1ji0_A ABC transporter; ATP bi 100.0 6.4E-48 2.2E-52 381.5 24.0 208 96-345 5-227 (240)
20 1z47_A CYSA, putative ABC-tran 100.0 6.9E-48 2.4E-52 399.7 24.2 211 94-345 11-234 (355)
21 1g6h_A High-affinity branched- 100.0 2.5E-48 8.5E-53 388.3 20.1 218 95-343 5-239 (257)
22 2it1_A 362AA long hypothetical 100.0 1.7E-47 5.7E-52 398.1 24.1 208 97-345 3-222 (362)
23 2yyz_A Sugar ABC transporter, 100.0 1.3E-47 4.6E-52 398.5 22.4 208 97-345 3-222 (359)
24 1g29_1 MALK, maltose transport 100.0 4E-47 1.4E-51 397.3 25.0 208 97-345 3-228 (372)
25 1v43_A Sugar-binding transport 100.0 2.7E-47 9.1E-52 398.0 23.2 208 97-345 11-230 (372)
26 1oxx_K GLCV, glucose, ABC tran 100.0 2.1E-47 7E-52 397.1 21.5 208 97-345 3-229 (353)
27 3d31_A Sulfate/molybdate ABC t 100.0 5.1E-47 1.7E-51 392.8 23.6 203 97-344 1-215 (348)
28 2nq2_C Hypothetical ABC transp 100.0 9.1E-47 3.1E-51 375.8 24.4 208 96-344 3-215 (253)
29 3nh6_A ATP-binding cassette SU 100.0 5.2E-47 1.8E-51 386.4 22.5 215 95-347 51-278 (306)
30 2ihy_A ABC transporter, ATP-bi 100.0 2.6E-47 8.9E-52 384.8 19.6 214 94-344 18-250 (279)
31 2onk_A Molybdate/tungstate ABC 100.0 5.4E-47 1.8E-51 374.5 21.1 203 97-345 1-215 (240)
32 2yz2_A Putative ABC transporte 100.0 1.2E-46 4.1E-51 377.9 21.5 208 97-345 2-226 (266)
33 2zu0_C Probable ATP-dependent 100.0 3.9E-46 1.3E-50 374.3 23.4 217 95-344 18-252 (267)
34 2d2e_A SUFC protein; ABC-ATPas 100.0 2.1E-46 7.2E-51 372.9 19.0 209 97-342 3-229 (250)
35 2ixe_A Antigen peptide transpo 100.0 1.7E-45 5.7E-50 370.4 23.2 213 95-346 14-245 (271)
36 2ff7_A Alpha-hemolysin translo 100.0 1.5E-45 5.2E-50 365.9 20.2 209 97-345 7-231 (247)
37 1sgw_A Putative ABC transporte 100.0 4.6E-46 1.6E-50 361.2 15.4 190 96-329 9-206 (214)
38 2pjz_A Hypothetical protein ST 100.0 1.9E-45 6.5E-50 367.9 20.1 199 97-343 1-212 (263)
39 2qi9_C Vitamin B12 import ATP- 100.0 2.8E-45 9.6E-50 364.0 20.7 198 96-344 3-220 (249)
40 2pze_A Cystic fibrosis transme 100.0 1.6E-44 5.5E-49 354.6 24.3 207 96-345 5-217 (229)
41 1mv5_A LMRA, multidrug resista 100.0 1.5E-45 5.2E-50 365.2 16.5 203 97-346 1-226 (243)
42 2cbz_A Multidrug resistance-as 100.0 8.7E-45 3E-49 358.3 18.8 201 97-346 3-217 (237)
43 2ghi_A Transport protein; mult 100.0 4.5E-44 1.6E-48 357.9 20.6 202 96-346 16-242 (260)
44 3gd7_A Fusion complex of cysti 100.0 1.2E-43 4.2E-48 372.6 18.8 200 95-345 17-241 (390)
45 3qf4_A ABC transporter, ATP-bi 100.0 2.4E-42 8.2E-47 383.3 25.7 256 49-347 296-567 (587)
46 3b5x_A Lipid A export ATP-bind 100.0 3.3E-42 1.1E-46 382.3 26.8 256 47-346 296-567 (582)
47 3qf4_B Uncharacterized ABC tra 100.0 1.2E-42 4.1E-47 386.7 22.6 259 47-347 308-579 (598)
48 4a82_A Cystic fibrosis transme 100.0 1.1E-42 3.9E-47 385.6 21.8 258 48-346 293-564 (578)
49 3b60_A Lipid A export ATP-bind 100.0 3.9E-42 1.3E-46 381.7 23.0 257 48-346 297-567 (582)
50 2yl4_A ATP-binding cassette SU 100.0 6.4E-42 2.2E-46 380.9 24.5 251 48-346 294-570 (595)
51 2bbs_A Cystic fibrosis transme 100.0 1.1E-41 3.9E-46 345.1 20.6 205 95-345 38-246 (290)
52 4f4c_A Multidrug resistance pr 100.0 2.2E-40 7.6E-45 396.7 22.6 252 56-347 1038-1305(1321)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 2.6E-39 9E-44 354.6 20.0 202 95-345 285-492 (538)
54 3ozx_A RNAse L inhibitor; ATP 100.0 5.5E-39 1.9E-43 351.4 21.4 192 95-332 267-462 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 5.3E-39 1.8E-43 356.0 20.9 202 95-345 355-562 (607)
56 2iw3_A Elongation factor 3A; a 100.0 6.3E-39 2.2E-43 367.1 21.5 245 95-341 669-983 (986)
57 3g5u_A MCG1178, multidrug resi 100.0 4.5E-39 1.5E-43 384.5 16.2 215 95-347 1028-1259(1284)
58 3j16_B RLI1P; ribosome recycli 100.0 9.9E-37 3.4E-41 337.3 19.7 198 101-346 350-559 (608)
59 2vf7_A UVRA2, excinuclease ABC 100.0 4.8E-36 1.6E-40 340.5 20.0 181 234-473 355-547 (842)
60 3pih_A Uvrabc system protein A 100.0 6.7E-35 2.3E-39 333.7 24.6 173 239-467 444-627 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 6.7E-36 2.3E-40 339.6 15.6 180 234-471 480-671 (972)
62 2ygr_A Uvrabc system protein A 100.0 1.4E-35 4.9E-40 338.1 17.1 181 235-471 498-689 (993)
63 3ux8_A Excinuclease ABC, A sub 100.0 4.1E-32 1.4E-36 306.0 16.9 107 237-345 521-639 (670)
64 1tf7_A KAIC; homohexamer, hexa 100.0 1.3E-34 4.4E-39 317.6 -9.7 323 97-555 12-365 (525)
65 2vf7_A UVRA2, excinuclease ABC 100.0 8.4E-31 2.9E-35 297.5 15.8 107 237-345 708-826 (842)
66 2npi_A Protein CLP1; CLP1-PCF1 100.0 5.6E-34 1.9E-38 306.0 -11.8 195 95-343 116-335 (460)
67 4aby_A DNA repair protein RECN 100.0 1.2E-29 4.1E-34 269.9 21.1 224 111-336 49-379 (415)
68 2r6f_A Excinuclease ABC subuni 100.0 2.1E-29 7.2E-34 286.4 17.9 107 238-346 824-942 (972)
69 3pih_A Uvrabc system protein A 100.0 3.7E-29 1.3E-33 286.3 20.0 108 237-346 783-902 (916)
70 2ygr_A Uvrabc system protein A 100.0 1.8E-29 6.1E-34 288.0 15.8 107 238-346 842-960 (993)
71 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.5E-27 8.6E-32 248.0 14.8 81 254-335 274-363 (365)
72 3gfo_A Cobalt import ATP-bindi 99.9 2.3E-26 7.8E-31 231.1 15.2 132 422-555 5-155 (275)
73 2pcj_A ABC transporter, lipopr 99.9 2.1E-26 7E-31 225.0 13.5 129 424-555 4-152 (224)
74 3tif_A Uncharacterized ABC tra 99.9 1.9E-26 6.5E-31 226.8 13.0 129 425-555 2-157 (235)
75 3fvq_A Fe(3+) IONS import ATP- 99.9 1.8E-26 6.1E-31 239.1 13.0 129 424-555 4-150 (359)
76 1sgw_A Putative ABC transporte 99.9 5.7E-26 1.9E-30 220.0 14.5 129 422-555 8-145 (214)
77 2olj_A Amino acid ABC transpor 99.9 4.2E-26 1.4E-30 227.8 13.9 129 424-555 24-171 (263)
78 1b0u_A Histidine permease; ABC 99.9 4.5E-26 1.5E-30 227.7 14.0 130 423-555 5-165 (262)
79 3b85_A Phosphate starvation-in 99.9 4.5E-29 1.5E-33 240.9 -7.6 153 106-333 9-171 (208)
80 2ihy_A ABC transporter, ATP-bi 99.9 3E-26 1E-30 230.8 12.5 134 421-555 18-173 (279)
81 4g1u_C Hemin import ATP-bindin 99.9 8.1E-26 2.8E-30 226.2 14.9 131 422-555 9-153 (266)
82 3rlf_A Maltose/maltodextrin im 99.9 5E-26 1.7E-30 237.3 13.6 129 424-555 3-145 (381)
83 1ji0_A ABC transporter; ATP bi 99.9 6.7E-26 2.3E-30 223.7 13.6 131 422-555 4-151 (240)
84 1e69_A Chromosome segregation 99.9 2E-26 6.8E-31 237.3 9.7 90 252-342 212-309 (322)
85 1z47_A CYSA, putative ABC-tran 99.9 1E-25 3.5E-30 233.5 14.8 133 420-555 10-157 (355)
86 1g6h_A High-affinity branched- 99.9 8.5E-26 2.9E-30 225.2 12.7 130 423-555 6-165 (257)
87 1vpl_A ABC transporter, ATP-bi 99.9 1.1E-25 3.6E-30 224.1 13.1 130 423-555 14-158 (256)
88 3tui_C Methionine import ATP-b 99.9 1.1E-25 3.8E-30 233.3 13.5 132 421-555 21-175 (366)
89 4gp7_A Metallophosphoesterase; 99.9 1.3E-26 4.6E-31 216.7 5.7 148 115-326 1-168 (171)
90 2yyz_A Sugar ABC transporter, 99.9 2.1E-25 7.3E-30 231.6 14.8 129 424-555 3-145 (359)
91 2it1_A 362AA long hypothetical 99.9 1.8E-25 6.1E-30 232.4 13.7 129 424-555 3-145 (362)
92 1ye8_A Protein THEP1, hypothet 99.9 3E-26 1E-30 215.9 6.0 135 125-325 2-152 (178)
93 1v43_A Sugar-binding transport 99.9 3E-25 1E-29 231.5 13.8 129 424-555 11-153 (372)
94 2yz2_A Putative ABC transporte 99.9 4.2E-25 1.4E-29 221.3 14.3 131 424-555 2-150 (266)
95 3d31_A Sulfate/molybdate ABC t 99.9 2.7E-25 9.4E-30 230.0 13.3 127 425-555 2-139 (348)
96 1oxx_K GLCV, glucose, ABC tran 99.9 3.2E-25 1.1E-29 230.2 13.8 129 424-555 3-152 (353)
97 1g29_1 MALK, maltose transport 99.9 4.9E-25 1.7E-29 230.2 14.5 129 424-555 3-151 (372)
98 2ff7_A Alpha-hemolysin translo 99.9 1.2E-24 4E-29 215.6 13.5 130 423-555 6-157 (247)
99 2nq2_C Hypothetical ABC transp 99.9 1.4E-24 4.8E-29 215.7 13.8 126 424-555 4-140 (253)
100 2pjz_A Hypothetical protein ST 99.9 9.1E-25 3.1E-29 218.1 12.1 125 425-555 2-140 (263)
101 2d2e_A SUFC protein; ABC-ATPas 99.9 5.9E-25 2E-29 218.2 10.5 130 424-555 3-155 (250)
102 2onk_A Molybdate/tungstate ABC 99.9 1.5E-24 5.3E-29 213.7 13.0 125 425-555 2-138 (240)
103 2zu0_C Probable ATP-dependent 99.9 1.7E-24 5.7E-29 217.0 12.7 132 422-555 18-176 (267)
104 2v9p_A Replication protein E1; 99.9 6.8E-29 2.3E-33 252.2 -19.6 164 96-344 100-264 (305)
105 2ixe_A Antigen peptide transpo 99.9 2.2E-24 7.6E-29 216.4 12.0 129 423-555 15-168 (271)
106 3nh6_A ATP-binding cassette SU 99.9 2.2E-24 7.5E-29 219.5 12.0 130 423-555 52-202 (306)
107 1mv5_A LMRA, multidrug resista 99.9 1.5E-24 5.2E-29 214.3 10.2 128 425-555 2-151 (243)
108 2qi9_C Vitamin B12 import ATP- 99.9 7.1E-24 2.4E-28 210.0 13.9 124 424-555 4-138 (249)
109 1tq4_A IIGP1, interferon-induc 99.9 1.7E-27 5.9E-32 251.5 -13.2 171 110-332 36-254 (413)
110 2pze_A Cystic fibrosis transme 99.9 1.7E-23 5.7E-28 205.0 15.0 125 424-555 6-142 (229)
111 2cbz_A Multidrug resistance-as 99.9 6.7E-24 2.3E-28 208.9 10.9 125 424-555 3-139 (237)
112 2ghi_A Transport protein; mult 99.9 1.3E-23 4.5E-28 209.6 12.7 129 423-555 16-167 (260)
113 3b9q_A Chloroplast SRP recepto 99.9 5.2E-25 1.8E-29 224.3 -0.8 173 107-334 84-284 (302)
114 3gd7_A Fusion complex of cysti 99.9 6E-23 2E-27 215.5 12.4 127 423-555 18-167 (390)
115 1znw_A Guanylate kinase, GMP k 99.9 6.9E-26 2.4E-30 218.3 -9.6 173 110-330 9-202 (207)
116 2dpy_A FLII, flagellum-specifi 99.9 3.4E-24 1.2E-28 228.8 -2.0 174 95-335 129-334 (438)
117 3qkt_A DNA double-strand break 99.9 1.3E-21 4.4E-26 202.8 17.1 78 252-330 241-327 (339)
118 3b5x_A Lipid A export ATP-bind 99.9 3.6E-22 1.2E-26 221.4 13.2 130 423-555 340-492 (582)
119 3b60_A Lipid A export ATP-bind 99.9 4.3E-22 1.5E-26 220.7 13.8 130 423-555 340-492 (582)
120 2og2_A Putative signal recogni 99.9 9.3E-24 3.2E-28 219.2 0.4 165 114-333 148-340 (359)
121 4ad8_A DNA repair protein RECN 99.9 2.2E-21 7.7E-26 212.1 18.6 77 255-332 392-473 (517)
122 3aez_A Pantothenate kinase; tr 99.9 2.3E-25 8E-30 227.9 -12.2 180 96-333 42-246 (312)
123 2yl4_A ATP-binding cassette SU 99.9 8.1E-22 2.8E-26 219.1 13.5 128 425-555 342-495 (595)
124 4a82_A Cystic fibrosis transme 99.9 7.8E-22 2.7E-26 218.4 12.7 130 423-555 338-489 (578)
125 2bbs_A Cystic fibrosis transme 99.9 6.8E-22 2.3E-26 200.0 11.1 123 423-555 39-171 (290)
126 1z6g_A Guanylate kinase; struc 99.9 4.9E-25 1.7E-29 214.3 -12.2 170 111-328 11-206 (218)
127 2o8b_B DNA mismatch repair pro 99.9 1.8E-22 6.2E-27 234.8 6.4 164 95-335 748-930 (1022)
128 2o5v_A DNA replication and rep 99.9 4.4E-21 1.5E-25 199.4 16.1 84 254-342 259-352 (359)
129 3qf4_B Uncharacterized ABC tra 99.9 7.1E-22 2.4E-26 219.5 10.5 128 424-555 354-503 (598)
130 3qf4_A ABC transporter, ATP-bi 99.9 1.2E-21 4E-26 217.2 11.5 130 423-555 340-491 (587)
131 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.2E-23 7.4E-28 215.1 -2.4 141 100-333 151-291 (330)
132 2obl_A ESCN; ATPase, hydrolase 99.8 1.6E-22 5.6E-27 209.6 -0.8 175 95-335 43-245 (347)
133 3sop_A Neuronal-specific septi 99.8 7.8E-23 2.7E-27 205.1 -4.7 141 125-317 4-151 (270)
134 1tf7_A KAIC; homohexamer, hexa 99.8 9.3E-22 3.2E-26 215.5 3.2 168 98-333 258-444 (525)
135 1cr0_A DNA primase/helicase; R 99.8 3.2E-21 1.1E-25 195.7 3.5 180 110-333 22-236 (296)
136 1ewq_A DNA mismatch repair pro 99.8 8.2E-21 2.8E-25 214.7 6.3 185 49-323 510-704 (765)
137 2jeo_A Uridine-cytidine kinase 99.8 8.3E-21 2.8E-25 187.6 4.4 169 108-332 10-179 (245)
138 2eyu_A Twitching motility prot 99.8 1.4E-21 4.9E-26 194.9 -2.2 141 98-331 6-147 (261)
139 2i3b_A HCR-ntpase, human cance 99.8 3.5E-21 1.2E-25 182.8 -1.2 150 123-344 1-176 (189)
140 1w1w_A Structural maintenance 99.8 5E-19 1.7E-23 189.1 15.3 76 254-330 328-410 (430)
141 3thx_A DNA mismatch repair pro 99.8 1.7E-19 5.7E-24 207.6 11.5 154 96-335 630-803 (934)
142 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.8E-19 9.7E-24 162.8 8.7 81 253-334 51-142 (148)
143 4a74_A DNA repair and recombin 99.8 3.2E-20 1.1E-24 180.2 2.2 74 260-333 100-201 (231)
144 2ehv_A Hypothetical protein PH 99.8 3.9E-20 1.3E-24 181.9 0.8 72 260-331 118-207 (251)
145 3thx_B DNA mismatch repair pro 99.8 1.9E-19 6.6E-24 206.4 6.6 152 97-325 640-804 (918)
146 2qnr_A Septin-2, protein NEDD5 99.8 4.2E-21 1.4E-25 195.6 -7.2 158 101-317 2-168 (301)
147 3auy_A DNA double-strand break 99.8 8.3E-18 2.8E-22 176.2 17.6 75 255-330 276-359 (371)
148 3asz_A Uridine kinase; cytidin 99.7 1.1E-20 3.6E-25 181.9 -10.3 143 120-317 3-162 (211)
149 2w0m_A SSO2452; RECA, SSPF, un 99.7 7.4E-18 2.5E-22 163.4 7.1 169 109-333 8-193 (235)
150 1rj9_A FTSY, signal recognitio 99.7 3.9E-18 1.3E-22 173.6 3.5 141 122-317 101-259 (304)
151 1wb9_A DNA mismatch repair pro 99.7 6.2E-18 2.1E-22 192.3 5.2 160 96-333 576-746 (800)
152 3szr_A Interferon-induced GTP- 99.7 3.9E-19 1.3E-23 197.5 -6.3 152 96-317 9-197 (608)
153 3kta_B Chromosome segregation 99.7 1.6E-16 5.6E-21 148.2 11.8 94 252-346 57-158 (173)
154 3jvv_A Twitching mobility prot 99.7 1.2E-17 4.2E-22 173.5 3.5 139 101-332 92-246 (356)
155 2qag_C Septin-7; cell cycle, c 99.7 3.3E-18 1.1E-22 181.1 -1.0 161 95-318 9-179 (418)
156 1pui_A ENGB, probable GTP-bind 99.7 1.2E-18 4.3E-23 166.6 -4.3 180 97-303 3-194 (210)
157 1nlf_A Regulatory protein REPA 99.6 2.1E-16 7.3E-21 158.8 9.7 146 120-320 27-185 (279)
158 1pzn_A RAD51, DNA repair and r 99.6 1.1E-17 3.7E-22 173.8 -2.0 152 111-334 118-304 (349)
159 2cvh_A DNA repair and recombin 99.6 2.5E-15 8.6E-20 144.6 9.2 74 259-332 84-185 (220)
160 2ewv_A Twitching motility prot 99.6 4.7E-16 1.6E-20 162.8 2.0 124 111-329 126-256 (372)
161 2gza_A Type IV secretion syste 99.6 2.7E-16 9.4E-21 164.0 -0.2 144 99-333 137-303 (361)
162 1s96_A Guanylate kinase, GMP k 99.5 4.5E-16 1.5E-20 151.0 0.5 134 117-332 10-151 (219)
163 1lw7_A Transcriptional regulat 99.5 1.5E-18 5.2E-23 181.4 -19.0 166 112-330 157-342 (365)
164 2qag_B Septin-6, protein NEDD5 99.5 7.3E-16 2.5E-20 162.7 -0.0 178 98-316 17-219 (427)
165 1htw_A HI0065; nucleotide-bind 99.5 1.2E-16 4.1E-21 147.2 -6.8 83 99-183 9-96 (158)
166 1zp6_A Hypothetical protein AT 99.5 1.5E-16 5.1E-21 150.1 -6.4 154 119-326 5-169 (191)
167 2npi_A Protein CLP1; CLP1-PCF1 99.5 1.9E-17 6.6E-22 177.5 -15.0 124 422-555 116-247 (460)
168 1n0w_A DNA repair protein RAD5 99.5 2.1E-13 7.2E-18 133.1 11.1 31 119-149 20-52 (243)
169 2v9p_A Replication protein E1; 99.5 2.5E-16 8.5E-21 159.8 -10.1 107 424-551 101-208 (305)
170 3aez_A Pantothenate kinase; tr 99.5 5.1E-16 1.7E-20 158.6 -8.1 118 424-555 43-188 (312)
171 2rcn_A Probable GTPase ENGC; Y 99.4 5.6E-14 1.9E-18 145.4 4.6 116 112-274 205-328 (358)
172 2bdt_A BH3686; alpha-beta prot 99.4 6.8E-17 2.3E-21 152.6 -15.9 163 123-342 2-180 (189)
173 3e70_C DPA, signal recognition 99.4 2.6E-14 8.9E-19 146.8 1.9 155 120-333 126-305 (328)
174 2bbw_A Adenylate kinase 4, AK4 99.4 2.2E-15 7.5E-20 148.5 -6.4 143 122-304 26-195 (246)
175 2qm8_A GTPase/ATPase; G protei 99.4 2.7E-16 9.3E-21 162.5 -14.5 78 97-174 29-120 (337)
176 1htw_A HI0065; nucleotide-bind 99.4 7.8E-15 2.7E-19 135.0 -5.2 83 427-513 10-97 (158)
177 2yhs_A FTSY, cell division pro 99.4 1.1E-13 3.9E-18 147.8 2.9 147 113-314 283-447 (503)
178 3b85_A Phosphate starvation-in 99.4 6.3E-15 2.1E-19 141.8 -6.3 60 433-497 9-75 (208)
179 3sop_A Neuronal-specific septi 99.4 2.4E-14 8.1E-19 143.3 -3.3 97 452-555 4-110 (270)
180 2dpy_A FLII, flagellum-specifi 99.4 1.8E-14 6.2E-19 153.6 -4.5 121 423-555 130-269 (438)
181 1udx_A The GTP-binding protein 99.4 1.1E-13 3.9E-18 146.3 1.6 147 112-314 146-306 (416)
182 1nij_A Hypothetical protein YJ 99.4 1.3E-15 4.4E-20 156.2 -13.0 55 259-322 141-195 (318)
183 2jeo_A Uridine-cytidine kinase 99.3 1.7E-13 5.7E-18 135.0 2.5 110 435-554 10-127 (245)
184 3ec2_A DNA replication protein 99.3 2.8E-14 9.7E-19 133.5 -3.1 43 275-317 98-144 (180)
185 1z6g_A Guanylate kinase; struc 99.3 1.7E-13 5.7E-18 132.8 1.7 99 439-554 12-133 (218)
186 1p9r_A General secretion pathw 99.3 3.1E-15 1.1E-19 158.5 -13.1 62 97-160 143-204 (418)
187 1tq4_A IIGP1, interferon-induc 99.3 3E-14 1E-18 150.3 -5.7 110 437-555 36-168 (413)
188 3lda_A DNA repair protein RAD5 99.3 5.7E-12 2E-16 132.6 10.8 34 119-152 174-209 (400)
189 4aby_A DNA repair protein RECN 99.3 2.7E-12 9.3E-17 135.9 8.4 37 438-475 49-85 (415)
190 1sxj_E Activator 1 40 kDa subu 99.3 1.5E-12 5E-17 134.7 6.1 139 125-329 38-188 (354)
191 2f1r_A Molybdopterin-guanine d 99.3 2.4E-14 8.2E-19 133.4 -7.5 37 124-160 3-42 (171)
192 2oap_1 GSPE-2, type II secreti 99.3 1.5E-14 5.1E-19 157.1 -10.8 185 111-325 248-459 (511)
193 2obl_A ESCN; ATPase, hydrolase 99.2 1.4E-12 4.9E-17 134.8 2.7 63 423-486 44-107 (347)
194 2yv5_A YJEQ protein; hydrolase 99.2 5.6E-13 1.9E-17 135.5 -0.5 120 120-272 162-300 (302)
195 2kjq_A DNAA-related protein; s 99.2 3.7E-12 1.3E-16 115.8 3.7 35 112-152 30-64 (149)
196 1sq5_A Pantothenate kinase; P- 99.2 4.5E-14 1.5E-18 144.1 -10.2 83 97-182 37-149 (308)
197 3c8u_A Fructokinase; YP_612366 99.2 8.4E-14 2.9E-18 133.6 -8.2 148 120-325 19-168 (208)
198 1odf_A YGR205W, hypothetical 3 99.2 6.5E-13 2.2E-17 134.2 -3.0 134 121-294 29-169 (290)
199 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.3E-13 4.5E-18 144.5 -8.8 161 119-343 16-210 (392)
200 3b9q_A Chloroplast SRP recepto 99.2 3.5E-13 1.2E-17 136.9 -5.5 107 441-555 91-213 (302)
201 1p9r_A General secretion pathw 99.2 2.3E-13 7.9E-18 144.1 -8.8 125 424-553 143-303 (418)
202 4gp7_A Metallophosphoesterase; 99.1 3E-12 1E-16 119.0 -0.5 95 442-555 1-95 (171)
203 1in4_A RUVB, holliday junction 99.1 9.7E-14 3.3E-18 143.1 -12.7 168 98-325 19-211 (334)
204 1ls1_A Signal recognition part 99.1 4.7E-11 1.6E-15 120.9 6.6 130 98-303 77-207 (295)
205 2og2_A Putative signal recogni 99.1 1.5E-12 5.2E-17 135.0 -5.3 105 442-555 149-270 (359)
206 1u0l_A Probable GTPase ENGC; p 99.1 1.9E-12 6.6E-17 131.5 -5.2 55 118-172 164-231 (301)
207 2px0_A Flagellar biosynthesis 99.1 2.2E-10 7.6E-15 115.9 9.6 136 121-335 103-245 (296)
208 1lvg_A Guanylate kinase, GMP k 99.1 1.5E-13 5E-18 131.1 -13.5 56 270-330 116-172 (198)
209 2yv5_A YJEQ protein; hydrolase 99.1 3.1E-11 1.1E-15 122.6 2.7 108 446-555 161-299 (302)
210 2x8a_A Nuclear valosin-contain 99.1 5.6E-14 1.9E-18 141.0 -18.0 48 109-160 32-79 (274)
211 2qnr_A Septin-2, protein NEDD5 99.1 3.5E-12 1.2E-16 129.6 -5.2 113 428-555 2-125 (301)
212 1ye8_A Protein THEP1, hypothet 99.1 7.5E-12 2.5E-16 117.3 -2.6 81 452-555 2-88 (178)
213 2rcn_A Probable GTPase ENGC; Y 99.0 1.8E-11 6.2E-16 126.6 -0.4 108 440-555 206-325 (358)
214 2gza_A Type IV secretion syste 99.0 3.8E-11 1.3E-15 125.1 1.0 90 426-515 137-249 (361)
215 3euj_A Chromosome partition pr 99.0 6.3E-11 2.2E-15 127.0 2.8 59 99-160 8-66 (483)
216 3asz_A Uridine kinase; cytidin 99.0 9.6E-11 3.3E-15 112.0 3.7 95 447-554 3-104 (211)
217 2dr3_A UPF0273 protein PH0284; 99.0 2.1E-09 7.3E-14 104.6 12.7 56 276-331 127-196 (247)
218 1vma_A Cell division protein F 99.0 1.6E-10 5.3E-15 117.5 4.5 99 115-288 96-197 (306)
219 1u0l_A Probable GTPase ENGC; p 99.0 2E-11 6.8E-16 124.0 -2.2 100 446-546 165-294 (301)
220 1t9h_A YLOQ, probable GTPase E 98.9 3.4E-11 1.2E-15 122.2 -2.7 67 118-185 168-250 (307)
221 2ius_A DNA translocase FTSK; n 98.9 1.7E-11 5.9E-16 132.3 -5.9 173 115-328 159-361 (512)
222 1ypw_A Transitional endoplasmi 98.9 2.5E-10 8.4E-15 130.7 2.3 33 443-475 504-536 (806)
223 3euj_A Chromosome partition pr 98.9 4.4E-10 1.5E-14 120.5 3.8 50 438-488 18-67 (483)
224 1zp6_A Hypothetical protein AT 98.9 1.5E-11 5.3E-16 115.5 -6.8 104 445-555 4-121 (191)
225 1in4_A RUVB, holliday junction 98.9 1.1E-11 3.7E-16 127.8 -9.5 124 425-554 19-173 (334)
226 2f1r_A Molybdopterin-guanine d 98.9 5.8E-11 2E-15 110.4 -3.6 37 451-487 3-42 (171)
227 1e69_A Chromosome segregation 98.9 2.2E-09 7.5E-14 109.9 6.8 31 442-473 17-47 (322)
228 2pt7_A CAG-ALFA; ATPase, prote 98.8 1.1E-10 3.7E-15 120.1 -3.2 57 427-486 151-207 (330)
229 2eyu_A Twitching motility prot 98.8 1.8E-10 6E-15 114.6 -3.1 59 424-488 5-64 (261)
230 3tr0_A Guanylate kinase, GMP k 98.8 4.6E-10 1.6E-14 106.4 -1.0 60 117-180 1-70 (205)
231 2i3b_A HCR-ntpase, human cance 98.8 4E-10 1.4E-14 106.5 -1.5 78 450-552 1-92 (189)
232 2yhs_A FTSY, cell division pro 98.8 6.3E-10 2.2E-14 119.0 -0.2 73 440-514 283-371 (503)
233 1qhl_A Protein (cell division 98.8 1.2E-10 4E-15 113.2 -5.5 55 97-159 9-63 (227)
234 3k1j_A LON protease, ATP-depen 98.8 1.1E-09 3.9E-14 121.5 1.5 180 101-303 38-226 (604)
235 2oap_1 GSPE-2, type II secreti 98.8 1.4E-09 4.8E-14 118.0 1.8 50 438-487 248-297 (511)
236 2r6a_A DNAB helicase, replicat 98.8 5.7E-09 1.9E-13 111.9 6.5 178 110-333 190-400 (454)
237 2zr9_A Protein RECA, recombina 98.8 7E-09 2.4E-13 107.3 6.9 69 266-334 126-232 (349)
238 3kta_A Chromosome segregation 98.8 1.8E-09 6.1E-14 100.6 1.8 96 441-537 18-140 (182)
239 1iy2_A ATP-dependent metallopr 98.7 1.6E-12 5.6E-17 130.2 -20.3 56 99-158 51-106 (278)
240 2x8a_A Nuclear valosin-contain 98.7 2.3E-11 7.8E-16 121.9 -12.5 47 437-487 33-79 (274)
241 1sq5_A Pantothenate kinase; P- 98.7 2.4E-10 8.3E-15 116.3 -5.2 85 424-513 37-151 (308)
242 1znw_A Guanylate kinase, GMP k 98.7 2.8E-09 9.5E-14 101.8 2.4 38 438-477 10-47 (207)
243 1rj9_A FTSY, signal recognitio 98.7 2.9E-09 9.9E-14 108.1 2.2 64 449-514 101-180 (304)
244 1t9h_A YLOQ, probable GTPase E 98.7 1.3E-09 4.6E-14 110.4 -0.4 102 447-550 170-302 (307)
245 2qm8_A GTPase/ATPase; G protei 98.7 1.5E-10 5.3E-15 119.3 -7.5 62 425-486 30-91 (337)
246 3lnc_A Guanylate kinase, GMP k 98.7 3.4E-09 1.2E-13 102.9 2.3 38 111-148 15-53 (231)
247 1oix_A RAS-related protein RAB 98.7 2.6E-08 8.9E-13 93.5 7.5 35 267-303 153-187 (191)
248 3qf7_A RAD50; ABC-ATPase, ATPa 98.7 7.7E-09 2.6E-13 107.7 4.1 32 439-471 13-44 (365)
249 3szr_A Interferon-induced GTP- 98.7 9.3E-10 3.2E-14 122.1 -3.1 86 424-514 10-121 (608)
250 3nwj_A ATSK2; P loop, shikimat 98.7 1.2E-09 4.1E-14 107.8 -2.4 52 96-147 16-72 (250)
251 1s96_A Guanylate kinase, GMP k 98.7 5.6E-09 1.9E-13 100.9 2.1 54 444-497 10-71 (219)
252 3lnc_A Guanylate kinase, GMP k 98.6 1E-08 3.5E-13 99.5 1.8 36 439-474 16-52 (231)
253 1svm_A Large T antigen; AAA+ f 98.6 2.3E-10 8E-15 119.4 -10.8 147 111-288 157-312 (377)
254 1pui_A ENGB, probable GTP-bind 98.6 6.1E-09 2.1E-13 98.8 -0.1 57 424-483 3-64 (210)
255 2e87_A Hypothetical protein PH 98.6 9.7E-08 3.3E-12 99.0 8.5 63 254-317 226-293 (357)
256 3e70_C DPA, signal recognition 98.6 1.1E-08 3.7E-13 104.9 1.3 66 447-514 126-207 (328)
257 3kta_A Chromosome segregation 98.6 3.5E-08 1.2E-12 91.7 4.4 60 111-171 13-90 (182)
258 2qag_B Septin-6, protein NEDD5 98.5 6.2E-09 2.1E-13 109.8 -0.9 49 424-474 16-66 (427)
259 1qhl_A Protein (cell division 98.5 1.5E-09 5.2E-14 105.4 -5.8 56 424-487 9-64 (227)
260 1ewq_A DNA mismatch repair pro 98.5 9.4E-09 3.2E-13 116.4 -0.8 81 424-513 550-634 (765)
261 1iy2_A ATP-dependent metallopr 98.5 2.4E-10 8.2E-15 114.3 -13.3 57 426-486 51-107 (278)
262 3nwj_A ATSK2; P loop, shikimat 98.5 9.8E-09 3.4E-13 101.2 -1.7 52 423-474 16-72 (250)
263 3tr0_A Guanylate kinase, GMP k 98.5 7.2E-08 2.5E-12 91.1 4.0 32 444-475 1-32 (205)
264 4eun_A Thermoresistant glucoki 98.5 1.5E-08 5.1E-13 96.1 -0.9 42 115-160 21-62 (200)
265 3hr8_A Protein RECA; alpha and 98.5 1.3E-07 4.5E-12 97.7 5.9 36 119-154 57-92 (356)
266 2f9l_A RAB11B, member RAS onco 98.4 2.7E-07 9.2E-12 86.9 7.4 34 268-303 130-163 (199)
267 2qag_C Septin-7; cell cycle, c 98.4 1.2E-07 4E-12 100.2 4.2 51 423-479 10-60 (418)
268 2xau_A PRE-mRNA-splicing facto 98.4 1.9E-07 6.5E-12 106.4 6.2 72 255-326 186-262 (773)
269 1ls1_A Signal recognition part 98.4 3E-09 1E-13 107.6 -7.8 44 441-486 91-134 (295)
270 1nlf_A Regulatory protein REPA 98.4 1.2E-07 4.1E-12 94.7 3.8 99 447-553 27-128 (279)
271 3uie_A Adenylyl-sulfate kinase 98.4 1.1E-08 3.6E-13 97.2 -3.8 57 101-158 3-61 (200)
272 3thx_B DNA mismatch repair pro 98.4 2.2E-08 7.5E-13 115.1 -2.3 49 424-472 640-695 (918)
273 1udx_A The GTP-binding protein 98.4 1.3E-07 4.5E-12 99.8 3.7 45 440-484 147-202 (416)
274 1jjv_A Dephospho-COA kinase; P 98.4 1.1E-07 3.8E-12 90.2 2.8 70 260-331 60-132 (206)
275 4a74_A DNA repair and recombin 98.4 1.9E-07 6.5E-12 89.7 4.3 41 446-486 21-68 (231)
276 1fnn_A CDC6P, cell division co 98.4 2.5E-06 8.7E-11 88.3 13.0 48 276-324 124-177 (389)
277 3c8u_A Fructokinase; YP_612366 98.3 1.1E-07 3.9E-12 90.6 1.9 31 447-477 19-49 (208)
278 1odf_A YGR205W, hypothetical 3 98.3 7.4E-08 2.5E-12 97.0 0.5 97 449-555 30-146 (290)
279 2ce7_A Cell division protein F 98.3 2.2E-07 7.6E-12 99.7 4.2 59 262-320 93-168 (476)
280 2ehv_A Hypothetical protein PH 98.3 1.8E-07 6.3E-12 91.0 2.7 58 425-485 7-67 (251)
281 3a00_A Guanylate kinase, GMP k 98.3 1.7E-07 5.9E-12 87.7 2.0 27 123-149 1-27 (186)
282 2j41_A Guanylate kinase; GMP, 98.3 3.4E-07 1.2E-11 86.5 4.0 35 118-152 1-35 (207)
283 1lw7_A Transcriptional regulat 98.3 6E-08 2E-12 100.9 -1.6 44 440-483 158-207 (365)
284 1cr0_A DNA primase/helicase; R 98.3 7.9E-08 2.7E-12 96.8 -0.7 45 438-482 23-68 (296)
285 2o8b_B DNA mismatch repair pro 98.3 3.5E-07 1.2E-11 106.7 4.5 54 422-476 748-814 (1022)
286 2qtf_A Protein HFLX, GTP-bindi 98.3 1E-06 3.5E-11 91.5 7.2 39 121-159 176-226 (364)
287 1lvg_A Guanylate kinase, GMP k 98.3 1.7E-07 5.9E-12 88.8 1.2 29 447-475 1-29 (198)
288 2ewv_A Twitching motility prot 98.2 8.5E-08 2.9E-12 100.1 -1.3 55 439-495 127-188 (372)
289 4e22_A Cytidylate kinase; P-lo 98.2 1.1E-07 3.8E-12 93.6 -0.5 43 110-155 17-62 (252)
290 3t34_A Dynamin-related protein 98.2 5.4E-06 1.8E-10 85.8 11.6 43 110-155 24-68 (360)
291 3uie_A Adenylyl-sulfate kinase 98.2 4.3E-08 1.5E-12 92.9 -3.9 59 429-488 4-64 (200)
292 3cmw_A Protein RECA, recombina 98.2 1.3E-05 4.3E-10 97.1 16.0 30 447-476 729-758 (1706)
293 2j41_A Guanylate kinase; GMP, 98.2 6.9E-07 2.4E-11 84.3 4.2 35 445-479 1-35 (207)
294 1svm_A Large T antigen; AAA+ f 98.2 4.5E-08 1.5E-12 102.1 -4.7 43 438-483 157-199 (377)
295 3a00_A Guanylate kinase, GMP k 98.2 3.4E-07 1.2E-11 85.7 1.5 26 450-475 1-26 (186)
296 4a1f_A DNAB helicase, replicat 98.2 1.4E-06 4.7E-11 89.4 5.9 129 111-314 34-164 (338)
297 3vaa_A Shikimate kinase, SK; s 98.1 9.8E-07 3.4E-11 83.4 3.5 38 110-147 12-49 (199)
298 3jvv_A Twitching mobility prot 98.1 3.5E-07 1.2E-11 94.7 0.0 67 446-514 119-192 (356)
299 4dcu_A GTP-binding protein ENG 98.1 5.6E-06 1.9E-10 88.6 9.3 57 263-319 88-144 (456)
300 3thx_A DNA mismatch repair pro 98.1 1.9E-06 6.5E-11 99.4 5.7 58 422-479 629-699 (934)
301 1kgd_A CASK, peripheral plasma 98.1 9.7E-07 3.3E-11 82.1 2.4 35 122-156 4-39 (180)
302 4eun_A Thermoresistant glucoki 98.1 1E-06 3.6E-11 83.3 2.6 42 443-488 22-63 (200)
303 2qby_A CDC6 homolog 1, cell di 98.1 1.7E-06 6E-11 89.2 4.5 45 277-321 128-178 (386)
304 2bbw_A Adenylate kinase 4, AK4 98.1 8.2E-07 2.8E-11 86.8 1.8 63 449-513 26-97 (246)
305 1zu4_A FTSY; GTPase, signal re 98.1 6.4E-07 2.2E-11 91.4 0.9 46 113-158 95-140 (320)
306 4e22_A Cytidylate kinase; P-lo 98.1 5.7E-07 1.9E-11 88.6 0.3 35 448-482 25-62 (252)
307 1ixz_A ATP-dependent metallopr 98.1 9.6E-08 3.3E-12 93.8 -5.5 57 98-158 26-82 (254)
308 1v5w_A DMC1, meiotic recombina 98.0 6.1E-06 2.1E-10 85.0 7.8 28 119-146 118-145 (343)
309 2dy1_A Elongation factor G; tr 98.0 2.5E-07 8.5E-12 103.7 -3.1 46 271-318 93-138 (665)
310 1wb9_A DNA mismatch repair pro 98.0 2.5E-06 8.5E-11 97.1 4.9 50 424-474 577-631 (800)
311 2bdt_A BH3686; alpha-beta prot 98.0 1.1E-06 3.6E-11 82.1 1.6 35 450-487 2-36 (189)
312 2z43_A DNA repair and recombin 98.0 1.1E-05 3.7E-10 82.4 9.1 28 119-146 103-130 (324)
313 2w0m_A SSO2452; RECA, SSPF, un 98.0 5.7E-07 2E-11 86.2 -0.6 46 438-483 10-56 (235)
314 3vaa_A Shikimate kinase, SK; s 98.0 2.3E-06 7.7E-11 80.8 3.4 38 437-474 12-49 (199)
315 3tqc_A Pantothenate kinase; bi 98.0 1.4E-07 4.7E-12 96.2 -5.7 62 102-172 65-134 (321)
316 1kgd_A CASK, peripheral plasma 98.0 1.9E-06 6.6E-11 80.1 2.4 34 448-481 3-37 (180)
317 1ixz_A ATP-dependent metallopr 98.0 2.4E-07 8.2E-12 91.0 -4.6 58 425-486 26-83 (254)
318 2vp4_A Deoxynucleoside kinase; 97.9 2.5E-06 8.7E-11 82.5 2.2 39 117-159 14-52 (230)
319 1oix_A RAS-related protein RAB 97.9 8.9E-06 3E-10 76.0 5.8 38 452-489 31-79 (191)
320 3ec2_A DNA replication protein 97.9 7.3E-07 2.5E-11 82.7 -1.8 36 444-479 32-67 (180)
321 1rz3_A Hypothetical protein rb 97.9 1.9E-06 6.5E-11 81.6 0.6 38 120-157 19-56 (201)
322 1w1w_A Structural maintenance 97.9 5.3E-06 1.8E-10 88.0 3.8 48 425-478 7-54 (430)
323 2ffh_A Protein (FFH); SRP54, s 97.9 6.9E-06 2.4E-10 86.7 4.2 54 100-157 79-132 (425)
324 1n0w_A DNA repair protein RAD5 97.9 1.1E-05 3.8E-10 77.9 5.4 40 446-485 20-66 (243)
325 3tqc_A Pantothenate kinase; bi 97.9 5.7E-07 1.9E-11 91.7 -4.0 51 430-480 66-124 (321)
326 3tau_A Guanylate kinase, GMP k 97.9 7.2E-06 2.5E-10 78.1 3.8 29 121-149 6-34 (208)
327 2vp4_A Deoxynucleoside kinase; 97.9 3.9E-06 1.3E-10 81.2 1.9 37 446-486 16-52 (230)
328 1nij_A Hypothetical protein YJ 97.9 3.1E-06 1.1E-10 86.2 1.3 37 451-487 5-49 (318)
329 3ney_A 55 kDa erythrocyte memb 97.8 6.4E-06 2.2E-10 77.9 3.1 32 117-148 13-44 (197)
330 1rz3_A Hypothetical protein rb 97.8 2.6E-06 8.9E-11 80.6 0.4 38 447-484 19-56 (201)
331 2o5v_A DNA replication and rep 97.8 1.1E-05 3.8E-10 83.4 5.1 34 438-472 15-48 (359)
332 3bh0_A DNAB-like replicative h 97.8 9.8E-06 3.4E-10 82.4 4.5 54 260-315 134-190 (315)
333 3kl4_A SRP54, signal recogniti 97.8 4.2E-05 1.4E-09 80.9 9.4 35 122-156 96-130 (433)
334 2kjq_A DNAA-related protein; s 97.8 3.9E-06 1.3E-10 75.7 1.2 36 449-485 35-72 (149)
335 3tau_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 76.8 3.9 29 448-476 6-34 (208)
336 2qt1_A Nicotinamide riboside k 97.8 1.1E-05 3.8E-10 76.3 3.7 42 119-173 17-58 (207)
337 3lxx_A GTPase IMAP family memb 97.8 5.1E-05 1.8E-09 73.4 8.4 29 125-153 31-59 (239)
338 3cr8_A Sulfate adenylyltranfer 97.8 4.2E-06 1.4E-10 91.4 0.6 40 119-158 365-406 (552)
339 2p67_A LAO/AO transport system 97.8 2.5E-07 8.6E-12 95.3 -8.8 59 98-156 31-89 (341)
340 1knq_A Gluconate kinase; ALFA/ 97.7 7.1E-06 2.4E-10 75.4 1.8 37 448-488 6-42 (175)
341 1knq_A Gluconate kinase; ALFA/ 97.7 7.7E-06 2.6E-10 75.1 2.0 34 121-158 6-39 (175)
342 2f9l_A RAB11B, member RAS onco 97.7 2.1E-05 7.2E-10 73.7 5.0 39 452-490 7-56 (199)
343 1zu4_A FTSY; GTPase, signal re 97.7 3.5E-06 1.2E-10 85.9 -0.4 45 441-485 96-140 (320)
344 1pzn_A RAD51, DNA repair and r 97.7 1.4E-05 4.9E-10 82.4 3.6 44 444-487 125-175 (349)
345 3cr8_A Sulfate adenylyltranfer 97.7 4.7E-06 1.6E-10 91.0 -0.1 43 446-488 365-409 (552)
346 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 1.9E-05 6.4E-10 82.6 4.4 40 446-485 16-67 (392)
347 1vma_A Cell division protein F 97.7 4.7E-06 1.6E-10 84.4 -0.4 43 443-485 97-139 (306)
348 3ice_A Transcription terminati 97.7 4.8E-06 1.6E-10 86.1 -0.5 52 96-147 132-198 (422)
349 1kag_A SKI, shikimate kinase I 97.7 1.4E-05 4.7E-10 73.2 2.6 29 448-476 2-30 (173)
350 3ney_A 55 kDa erythrocyte memb 97.7 1.2E-05 4.3E-10 75.9 2.2 31 445-475 14-44 (197)
351 1ega_A Protein (GTP-binding pr 97.7 4E-06 1.4E-10 84.7 -1.4 61 260-327 101-170 (301)
352 3b9p_A CG5977-PA, isoform A; A 97.6 0.00023 7.9E-09 71.0 11.3 57 261-317 97-170 (297)
353 1kag_A SKI, shikimate kinase I 97.6 1.8E-05 6E-10 72.4 2.6 28 122-149 3-30 (173)
354 2wji_A Ferrous iron transport 97.6 0.00072 2.5E-08 61.0 12.5 24 125-148 5-28 (165)
355 3k1j_A LON protease, ATP-depen 97.6 1.7E-05 5.8E-10 87.9 1.8 56 429-484 39-95 (604)
356 2p67_A LAO/AO transport system 97.6 1.2E-06 4E-11 90.3 -7.2 53 430-482 36-88 (341)
357 1u94_A RECA protein, recombina 97.6 0.00043 1.5E-08 71.4 12.0 28 120-147 60-87 (356)
358 3ice_A Transcription terminati 97.5 1.4E-05 4.8E-10 82.6 0.3 51 424-474 133-198 (422)
359 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.7E-05 1.9E-09 68.0 4.0 29 115-144 16-44 (149)
360 3m6a_A ATP-dependent protease 97.5 2.3E-06 7.7E-11 93.7 -6.6 59 99-158 85-143 (543)
361 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.6E-05 1.9E-09 68.1 3.7 30 441-471 15-44 (149)
362 1cke_A CK, MSSA, protein (cyti 97.5 1.4E-05 4.7E-10 76.6 -0.5 34 123-156 5-41 (227)
363 2cvh_A DNA repair and recombin 97.4 5.5E-05 1.9E-09 71.7 3.0 27 446-472 16-42 (220)
364 2px0_A Flagellar biosynthesis 97.4 3.4E-05 1.2E-09 77.7 1.4 32 448-479 103-134 (296)
365 2pez_A Bifunctional 3'-phospho 97.4 3.2E-05 1.1E-09 71.3 1.1 31 121-152 3-33 (179)
366 2qt1_A Nicotinamide riboside k 97.4 5.6E-05 1.9E-09 71.4 2.5 30 446-475 17-46 (207)
367 4eaq_A DTMP kinase, thymidylat 97.4 5.2E-05 1.8E-09 73.3 2.2 43 112-155 12-57 (229)
368 1cke_A CK, MSSA, protein (cyti 97.4 3.3E-05 1.1E-09 73.8 0.8 35 449-483 4-41 (227)
369 2qag_A Septin-2, protein NEDD5 97.4 1.3E-05 4.6E-10 83.0 -2.2 54 95-154 15-68 (361)
370 3lda_A DNA repair protein RAD5 97.4 0.00012 4.1E-09 76.8 4.9 34 446-479 174-209 (400)
371 3m6a_A ATP-dependent protease 97.4 7.5E-06 2.6E-10 89.5 -4.6 60 425-485 84-143 (543)
372 2z4s_A Chromosomal replication 97.3 0.00032 1.1E-08 74.6 8.0 41 276-316 193-237 (440)
373 3llm_A ATP-dependent RNA helic 97.3 9.1E-05 3.1E-09 71.6 3.4 62 260-323 161-227 (235)
374 2pez_A Bifunctional 3'-phospho 97.3 5.8E-05 2E-09 69.6 1.5 36 448-484 3-40 (179)
375 2www_A Methylmalonic aciduria 97.3 5.3E-05 1.8E-09 78.1 1.3 37 122-158 73-109 (349)
376 4eaq_A DTMP kinase, thymidylat 97.3 8.1E-05 2.8E-09 72.0 2.4 41 440-481 13-56 (229)
377 2i1q_A DNA repair and recombin 97.2 0.00071 2.4E-08 68.6 8.9 27 119-145 94-120 (322)
378 3qks_A DNA double-strand break 97.2 0.00023 7.7E-09 67.5 4.9 30 115-145 16-45 (203)
379 2ffh_A Protein (FFH); SRP54, s 97.2 3.6E-05 1.2E-09 81.3 -0.9 52 429-484 81-132 (425)
380 1sxj_E Activator 1 40 kDa subu 97.2 0.0001 3.4E-09 75.5 2.2 36 451-486 37-73 (354)
381 1f6b_A SAR1; gtpases, N-termin 97.2 5.4E-05 1.9E-09 71.0 0.2 42 104-146 6-48 (198)
382 2dhr_A FTSH; AAA+ protein, hex 97.2 2.8E-05 9.4E-10 83.9 -2.3 57 426-486 42-98 (499)
383 1m2o_B GTP-binding protein SAR 97.2 0.00023 7.9E-09 66.1 4.3 35 111-146 12-46 (190)
384 1m7g_A Adenylylsulfate kinase; 97.2 5.2E-05 1.8E-09 72.0 -0.6 39 119-157 21-61 (211)
385 3cf0_A Transitional endoplasmi 97.1 0.00027 9.1E-09 71.1 4.6 29 119-147 45-73 (301)
386 2www_A Methylmalonic aciduria 97.1 0.0001 3.5E-09 75.9 1.5 35 449-483 73-107 (349)
387 2gj8_A MNME, tRNA modification 97.1 0.00038 1.3E-08 63.5 5.2 27 448-474 2-28 (172)
388 1j8m_F SRP54, signal recogniti 97.1 1.4E-05 4.8E-10 80.6 -5.0 55 100-157 77-132 (297)
389 4fcw_A Chaperone protein CLPB; 97.1 0.0004 1.4E-08 69.5 5.6 31 124-154 48-78 (311)
390 1jjv_A Dephospho-COA kinase; P 97.1 0.00024 8.3E-09 66.8 3.4 22 452-473 4-25 (206)
391 2dhr_A FTSH; AAA+ protein, hex 97.1 8.4E-05 2.9E-09 80.1 0.2 56 99-158 42-97 (499)
392 2q6t_A DNAB replication FORK h 97.1 0.0011 3.7E-08 70.5 8.8 130 111-314 188-318 (444)
393 3qks_A DNA double-strand break 97.1 0.00028 9.5E-09 66.8 3.7 30 441-471 15-44 (203)
394 2if2_A Dephospho-COA kinase; a 97.1 0.0002 6.9E-09 67.2 2.7 21 452-472 3-23 (204)
395 1m7g_A Adenylylsulfate kinase; 97.1 9.8E-05 3.4E-09 70.1 0.4 42 445-486 20-63 (211)
396 1mky_A Probable GTP-binding pr 97.0 0.00043 1.5E-08 73.5 5.2 35 125-159 182-228 (439)
397 1f6b_A SAR1; gtpases, N-termin 97.0 0.00016 5.5E-09 67.7 1.7 52 433-485 8-68 (198)
398 1y63_A LMAJ004144AAA protein; 97.0 0.00024 8.2E-09 65.9 2.8 32 115-146 2-33 (184)
399 3qkt_A DNA double-strand break 97.0 0.00032 1.1E-08 71.9 3.9 31 440-471 14-44 (339)
400 2if2_A Dephospho-COA kinase; a 97.0 0.00026 9E-09 66.4 2.9 21 125-145 3-23 (204)
401 2gj8_A MNME, tRNA modification 97.0 0.00033 1.1E-08 64.0 3.4 27 121-147 2-28 (172)
402 2ohf_A Protein OLA1, GTP-bindi 97.0 0.0003 1E-08 73.4 3.5 40 119-158 18-68 (396)
403 1m2o_B GTP-binding protein SAR 97.0 0.00057 2E-08 63.3 5.0 33 439-472 13-45 (190)
404 2qag_A Septin-2, protein NEDD5 97.0 0.00011 3.7E-09 76.2 -0.1 50 424-479 17-66 (361)
405 1mky_A Probable GTP-binding pr 97.0 0.00058 2E-08 72.5 5.5 38 451-488 181-230 (439)
406 1y63_A LMAJ004144AAA protein; 97.0 0.00031 1.1E-08 65.1 2.9 32 442-473 2-33 (184)
407 4ad8_A DNA repair protein RECN 97.0 0.00016 5.5E-09 78.5 1.0 34 439-473 50-83 (517)
408 2yvu_A Probable adenylyl-sulfa 97.0 0.0002 6.8E-09 66.4 1.4 36 446-481 9-44 (186)
409 2yvu_A Probable adenylyl-sulfa 97.0 0.00021 7.3E-09 66.1 1.6 35 120-154 10-44 (186)
410 1j8m_F SRP54, signal recogniti 96.9 4.2E-05 1.4E-09 77.1 -3.5 54 428-484 78-132 (297)
411 3t34_A Dynamin-related protein 96.9 0.00029 9.8E-09 72.7 2.6 42 438-482 25-68 (360)
412 2v1u_A Cell division control p 96.9 0.00076 2.6E-08 69.2 5.8 28 121-148 42-69 (387)
413 2dr3_A UPF0273 protein PH0284; 96.9 0.00026 9E-09 68.1 1.9 40 444-483 17-57 (247)
414 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00052 1.8E-08 71.6 3.9 40 446-485 18-68 (396)
415 2wji_A Ferrous iron transport 96.9 0.0013 4.3E-08 59.4 6.0 23 452-474 5-27 (165)
416 2wjg_A FEOB, ferrous iron tran 96.9 0.0006 2.1E-08 62.5 3.8 22 125-146 9-30 (188)
417 2qtf_A Protein HFLX, GTP-bindi 96.8 0.00084 2.9E-08 69.5 5.1 39 450-488 178-228 (364)
418 2qor_A Guanylate kinase; phosp 96.8 0.00055 1.9E-08 64.5 3.2 29 120-148 9-37 (204)
419 2wjg_A FEOB, ferrous iron tran 96.8 0.00091 3.1E-08 61.3 4.6 22 452-473 9-30 (188)
420 1xp8_A RECA protein, recombina 96.8 0.013 4.3E-07 60.6 13.7 27 120-146 71-97 (366)
421 2qor_A Guanylate kinase; phosp 96.8 0.00049 1.7E-08 64.8 2.8 30 446-475 8-37 (204)
422 2zej_A Dardarin, leucine-rich 96.8 0.00059 2E-08 62.8 3.3 26 125-150 4-29 (184)
423 3lxw_A GTPase IMAP family memb 96.8 0.0018 6.2E-08 63.0 6.9 24 125-148 23-46 (247)
424 1sxj_C Activator 1 40 kDa subu 96.8 7.8E-05 2.7E-09 76.2 -3.3 47 106-152 27-75 (340)
425 3hr8_A Protein RECA; alpha and 96.8 0.00036 1.2E-08 71.9 1.6 36 446-481 57-92 (356)
426 2zej_A Dardarin, leucine-rich 96.7 0.00082 2.8E-08 61.8 3.6 23 452-474 4-26 (184)
427 3cm0_A Adenylate kinase; ATP-b 96.7 0.00073 2.5E-08 62.2 2.9 25 448-472 2-26 (186)
428 2b8t_A Thymidine kinase; deoxy 96.7 0.0052 1.8E-07 59.0 9.0 53 276-330 88-150 (223)
429 1sxj_C Activator 1 40 kDa subu 96.6 8.6E-05 3E-09 75.9 -4.2 45 434-478 28-74 (340)
430 3auy_A DNA double-strand break 96.6 0.0013 4.4E-08 68.2 4.6 31 440-471 16-46 (371)
431 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0002 6.7E-09 73.5 -1.6 37 111-147 10-48 (359)
432 1njg_A DNA polymerase III subu 96.6 0.0052 1.8E-07 57.9 8.4 108 123-317 45-167 (250)
433 1q3t_A Cytidylate kinase; nucl 96.6 0.001 3.5E-08 64.2 3.3 27 446-472 12-38 (236)
434 1np6_A Molybdopterin-guanine d 96.6 0.00084 2.9E-08 62.0 2.5 34 451-484 7-43 (174)
435 3h4m_A Proteasome-activating n 96.6 0.0021 7E-08 63.5 5.6 27 121-147 49-75 (285)
436 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00026 8.8E-09 72.6 -1.1 36 439-474 11-48 (359)
437 3cm0_A Adenylate kinase; ATP-b 96.6 0.00092 3.1E-08 61.5 2.8 26 121-146 2-27 (186)
438 3t61_A Gluconokinase; PSI-biol 96.5 0.00086 2.9E-08 62.9 2.5 25 123-147 18-42 (202)
439 3io5_A Recombination and repai 96.5 0.007 2.4E-07 61.1 9.2 56 262-317 92-173 (333)
440 1q3t_A Cytidylate kinase; nucl 96.5 0.0011 3.8E-08 63.9 3.3 27 121-147 14-40 (236)
441 1l8q_A Chromosomal replication 96.5 0.0024 8.3E-08 64.4 6.0 27 123-149 37-63 (324)
442 3t61_A Gluconokinase; PSI-biol 96.5 0.00095 3.3E-08 62.5 2.7 25 450-474 18-42 (202)
443 1ega_A Protein (GTP-binding pr 96.5 0.0008 2.7E-08 67.7 2.1 26 449-474 7-32 (301)
444 1lv7_A FTSH; alpha/beta domain 96.4 0.00091 3.1E-08 65.2 1.9 31 443-475 40-70 (257)
445 1np6_A Molybdopterin-guanine d 96.4 0.0012 4.2E-08 60.9 2.7 26 124-149 7-32 (174)
446 3lxx_A GTPase IMAP family memb 96.4 0.0021 7.3E-08 61.8 4.1 28 452-479 31-58 (239)
447 2p5t_B PEZT; postsegregational 96.3 0.00072 2.5E-08 66.1 0.4 38 119-158 28-65 (253)
448 1lv7_A FTSH; alpha/beta domain 96.3 0.0011 3.7E-08 64.6 1.6 31 116-148 40-70 (257)
449 3r20_A Cytidylate kinase; stru 96.3 0.00082 2.8E-08 65.1 0.6 25 123-147 9-33 (233)
450 3ihw_A Centg3; RAS, centaurin, 96.3 0.006 2.1E-07 56.0 6.5 38 452-489 22-68 (184)
451 3ihw_A Centg3; RAS, centaurin, 96.3 0.0055 1.9E-07 56.3 6.1 28 125-152 22-54 (184)
452 3kb2_A SPBC2 prophage-derived 96.2 0.0022 7.4E-08 57.9 3.3 23 125-147 3-25 (173)
453 4ag6_A VIRB4 ATPase, type IV s 96.2 0.0015 5E-08 68.1 2.4 48 109-157 19-69 (392)
454 1q57_A DNA primase/helicase; d 96.2 0.036 1.2E-06 59.6 13.4 34 113-146 232-265 (503)
455 1ypw_A Transitional endoplasmi 96.2 0.0012 4.2E-08 75.3 1.8 33 445-477 233-265 (806)
456 3dm5_A SRP54, signal recogniti 96.2 0.037 1.3E-06 58.4 12.9 28 122-149 99-126 (443)
457 2ius_A DNA translocase FTSK; n 96.2 0.0016 5.5E-08 70.1 2.5 42 442-483 159-202 (512)
458 3kb2_A SPBC2 prophage-derived 96.2 0.0024 8.1E-08 57.7 3.3 22 452-473 3-24 (173)
459 1jal_A YCHF protein; nucleotid 96.2 0.0036 1.2E-07 64.5 4.9 24 123-146 2-25 (363)
460 2p5t_B PEZT; postsegregational 96.2 0.0015 5.3E-08 63.7 2.0 39 447-487 29-67 (253)
461 1qhx_A CPT, protein (chloramph 96.1 0.0031 1.1E-07 57.4 3.8 26 123-148 3-28 (178)
462 2zr9_A Protein RECA, recombina 96.1 0.0016 5.5E-08 67.0 1.9 30 446-475 57-86 (349)
463 2dy1_A Elongation factor G; tr 96.1 0.0013 4.5E-08 73.4 0.9 33 444-476 3-35 (665)
464 3cmw_A Protein RECA, recombina 96.0 0.013 4.6E-07 71.1 9.6 30 120-149 729-758 (1706)
465 1vht_A Dephospho-COA kinase; s 96.0 0.0028 9.6E-08 60.0 3.1 24 449-472 3-26 (218)
466 1kht_A Adenylate kinase; phosp 96.0 0.0036 1.2E-07 57.5 3.7 26 122-147 2-27 (192)
467 1via_A Shikimate kinase; struc 96.0 0.0027 9.2E-08 57.9 2.8 23 452-474 6-28 (175)
468 3bgw_A DNAB-like replicative h 96.0 0.0068 2.3E-07 64.3 6.3 53 260-314 263-318 (444)
469 1qhx_A CPT, protein (chloramph 96.0 0.0038 1.3E-07 56.9 3.7 26 450-475 3-28 (178)
470 3r20_A Cytidylate kinase; stru 96.0 0.0021 7.1E-08 62.2 1.9 24 449-472 8-31 (233)
471 3syl_A Protein CBBX; photosynt 96.0 0.039 1.3E-06 54.8 11.4 114 121-331 65-203 (309)
472 2ze6_A Isopentenyl transferase 96.0 0.003 1E-07 61.8 3.0 23 452-474 3-25 (253)
473 1xx6_A Thymidine kinase; NESG, 96.0 0.02 6.9E-07 53.5 8.6 53 276-330 80-142 (191)
474 2jaq_A Deoxyguanosine kinase; 96.0 0.0036 1.2E-07 58.1 3.4 23 125-147 2-24 (205)
475 1via_A Shikimate kinase; struc 96.0 0.0031 1.1E-07 57.5 2.8 23 125-147 6-28 (175)
476 1kht_A Adenylate kinase; phosp 96.0 0.0041 1.4E-07 57.1 3.6 24 450-473 3-26 (192)
477 1gtv_A TMK, thymidylate kinase 95.9 0.0011 3.9E-08 62.3 -0.3 25 125-149 2-26 (214)
478 3lw7_A Adenylate kinase relate 95.9 0.0038 1.3E-07 56.1 3.2 19 125-143 3-21 (179)
479 1gtv_A TMK, thymidylate kinase 95.9 0.0011 3.9E-08 62.3 -0.3 26 452-477 2-27 (214)
480 3lw7_A Adenylate kinase relate 95.9 0.004 1.4E-07 56.0 3.3 19 452-470 3-21 (179)
481 2jaq_A Deoxyguanosine kinase; 95.9 0.0041 1.4E-07 57.8 3.4 23 452-474 2-24 (205)
482 1vht_A Dephospho-COA kinase; s 95.9 0.0041 1.4E-07 58.8 3.4 23 123-145 4-26 (218)
483 2rhm_A Putative kinase; P-loop 95.9 0.0034 1.2E-07 57.8 2.7 26 448-473 3-28 (193)
484 2ze6_A Isopentenyl transferase 95.9 0.0038 1.3E-07 61.0 3.1 23 125-147 3-25 (253)
485 1jal_A YCHF protein; nucleotid 95.8 0.0062 2.1E-07 62.7 4.7 36 450-485 2-48 (363)
486 3trf_A Shikimate kinase, SK; a 95.8 0.0051 1.7E-07 56.4 3.6 26 122-147 4-29 (185)
487 3k53_A Ferrous iron transport 95.8 0.0042 1.4E-07 61.1 3.1 24 452-475 5-28 (271)
488 3k53_A Ferrous iron transport 95.8 0.0043 1.5E-07 61.1 3.2 45 286-330 144-192 (271)
489 2v54_A DTMP kinase, thymidylat 95.8 0.0048 1.7E-07 57.4 3.3 27 448-474 2-28 (204)
490 1uf9_A TT1252 protein; P-loop, 95.7 0.0047 1.6E-07 57.4 3.2 23 124-146 9-31 (203)
491 3kl4_A SRP54, signal recogniti 95.7 0.0022 7.5E-08 67.7 0.9 35 449-483 96-130 (433)
492 2v54_A DTMP kinase, thymidylat 95.7 0.006 2E-07 56.8 3.8 26 122-147 3-28 (204)
493 1ly1_A Polynucleotide kinase; 95.7 0.0055 1.9E-07 55.6 3.4 21 125-145 4-24 (181)
494 1ex7_A Guanylate kinase; subst 95.7 0.0051 1.7E-07 57.3 3.1 21 453-473 4-24 (186)
495 2rhm_A Putative kinase; P-loop 95.7 0.0048 1.7E-07 56.8 3.0 26 122-147 4-29 (193)
496 3iij_A Coilin-interacting nucl 95.7 0.0052 1.8E-07 56.2 3.2 26 121-146 9-34 (180)
497 3trf_A Shikimate kinase, SK; a 95.7 0.006 2.1E-07 55.9 3.6 25 449-473 4-28 (185)
498 1ly1_A Polynucleotide kinase; 95.7 0.0057 1.9E-07 55.5 3.4 22 451-472 3-24 (181)
499 1uf9_A TT1252 protein; P-loop, 95.6 0.0053 1.8E-07 57.0 3.1 24 450-473 8-31 (203)
500 1ex7_A Guanylate kinase; subst 95.6 0.0056 1.9E-07 57.0 3.1 22 126-147 4-25 (186)
No 1
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5e-62 Score=557.62 Aligned_cols=299 Identities=30% Similarity=0.558 Sum_probs=240.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC----CCceEEEEeccc-
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK----SNMKIAFLSQEF- 170 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g----~~~~ig~v~Q~~- 170 (555)
..|...|++++|+++.+|+|+||+|.+|++++|+|+||||||||+|+|+| |+| .| ...+++|++|++
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~~ 505 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDID 505 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCCC
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEccccc
Confidence 34777799999999999999999999999999999999999999999995 222 11 123578999985
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++.+||.+|+.... .+ . ..++.++|+.+||+.
T Consensus 506 ~~~~~ltv~e~l~~~~-------------------------------------------~~--~-~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 506 GTHSDTSVLDFVFESG-------------------------------------------VG--T-KEAIKDKLIEFGFTD 539 (986)
T ss_dssp CCCTTSBHHHHHHTTC-------------------------------------------SS--C-HHHHHHHHHHTTCCH
T ss_pred ccccCCcHHHHHHHhh-------------------------------------------cC--H-HHHHHHHHHHcCCCh
Confidence 5567889998874200 00 1 456778899999965
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
...++++.+|||||||||+|||||+.+|+|||||||||+||+.++++|.++|++.|.|||+||||++++..+||+|++|+
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~ 619 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYE 619 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 66789999999999999999999999999999999999999999999999998788999999999999999999999999
Q ss_pred CCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccc
Q 008750 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQM 410 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 410 (555)
+|++..+.|+++++....... ..... +. . ...
T Consensus 620 ~G~iv~~~G~~~e~~~~~~~~----------------------~~~~~----------------l~-----~-----~~~ 651 (986)
T 2iw3_A 620 GLKLRKYKGNFTEFVKKCPAA----------------------KAYEE----------------LS-----N-----TDL 651 (986)
T ss_dssp TTEEEEEESCHHHHHHHCGGG----------------------GGSSS----------------TT-----T-----CCC
T ss_pred CCeeecCCCCHHHHHhhhHHH----------------------HHHHh----------------hh-----h-----hhh
Confidence 999877889998775421000 00000 00 0 000
Q ss_pred eeeccCC------CCCCCceEEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008750 411 KIRFPER------GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (555)
Q Consensus 411 ~~~~~~~------~~~~~~~l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~ 482 (555)
.+.++.+ ...++++|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.
T Consensus 652 ~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 652 EFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp CCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred hccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 1111111 1134678999999999975 5789999999999999999999999999999999999999999999
Q ss_pred ECCceeeeEEEecCC
Q 008750 483 LGEHNVLPNYFEQNQ 497 (555)
Q Consensus 483 ~~~~~~~~~y~~Q~~ 497 (555)
+++ +.+++|++|++
T Consensus 732 ~~~-~~~I~yv~Q~~ 745 (986)
T 2iw3_A 732 THE-NCRIAYIKQHA 745 (986)
T ss_dssp ECT-TCCEEEECHHH
T ss_pred EcC-ccceEeeccch
Confidence 975 45789999974
No 2
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.5e-62 Score=534.48 Aligned_cols=358 Identities=24% Similarity=0.307 Sum_probs=266.1
Q ss_pred EEE-EeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE---------EEcCCC------
Q 008750 98 VKL-ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKSN------ 160 (555)
Q Consensus 98 i~l-~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I---------~~~g~~------ 160 (555)
.++ +||+|+|++. .+|+||| +|++||++||||+||||||||+|+|+|+++|++|++ .++|..
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 466 6999999876 4999999 999999999999999999999999999999999995 234422
Q ss_pred ------ceEEEEecccccCcC---ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 ------MKIAFLSQEFEVSMS---RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 ------~~ig~v~Q~~~~~~~---~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..+++++|+....+. .|+.+++..
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----------------------------------------------- 132 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----------------------------------------------- 132 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH-----------------------------------------------
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh-----------------------------------------------
Confidence 347888887544322 366554410
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCce
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~t 308 (555)
.....++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|++ .|.|
T Consensus 133 -~~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~t 210 (538)
T 1yqt_A 133 -ADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210 (538)
T ss_dssp -HCSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred -hhHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 00113466788999996 467999999999999999999999999999999999999999999988887743 5899
Q ss_pred EEEEecCHHHHHhhcceeEEecCCeE--eeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHH
Q 008750 309 MVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~G~~--~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (555)
||+||||++++..+||+|++|+++.. ..+...+..-. .+ ...........
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~~------ 262 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN-------------------GI---NEFLRGYLKDE------ 262 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH-------------------HH---HHHHHTEETTT------
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH-------------------HH---HHHhhhccchh------
Confidence 99999999999999999999986421 12233332100 00 00000000000
Q ss_pred HHHHHHHHHHHhhhhcCccccccceeeccCCC--CCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHH
Q 008750 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (555)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKS 464 (555)
. .... .....+.++... ..++++++++|+++.|++. .|+.+||+|++||+++|+||||||||
T Consensus 263 ------------~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 263 ------------N-VRFR--PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKT 326 (538)
T ss_dssp ------------T-EECS--SSCCCCCCSSGGGSSCCCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred ------------h-hccc--ccccccccCCcccccCCCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHH
Confidence 0 0000 000111111111 1356789999999999764 68999999999999999999999999
Q ss_pred HHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhh-ccc-CcHHHHHHHHhhCCCChhhhccccC
Q 008750 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKADMLDRKVS 542 (555)
Q Consensus 465 TLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~-~~~-~~~~~~~~~L~~~~~~~~~~~~~~~ 542 (555)
||+|+|+|+++|++|+|.+. ..++|++|++. ..+..||.+++... ... .....+..+|..+++. +..++++.
T Consensus 327 TLlk~l~Gl~~p~~G~i~~~---~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 400 (538)
T 1yqt_A 327 TFVKMLAGVEEPTEGKIEWD---LTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVN 400 (538)
T ss_dssp HHHHHHHTSSCCSBCCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGG
T ss_pred HHHHHHhCCCCCCCeEEEEC---ceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChh
Confidence 99999999999999999763 46899999863 34678998887643 111 1245678899999995 67899999
Q ss_pred CCChhHHhchhcC
Q 008750 543 LLSGGEKVNQTLV 555 (555)
Q Consensus 543 ~LSGGek~Rv~La 555 (555)
.|||||||||+||
T Consensus 401 ~LSGGe~qrv~lA 413 (538)
T 1yqt_A 401 ELSGGELQRVAIA 413 (538)
T ss_dssp GCCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH
Confidence 9999999999986
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=7.9e-62 Score=538.70 Aligned_cols=359 Identities=24% Similarity=0.320 Sum_probs=268.6
Q ss_pred cEEE--------EeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE---------EEcC
Q 008750 97 GVKL--------ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158 (555)
Q Consensus 97 ~i~l--------~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I---------~~~g 158 (555)
.|++ +||+++|++. .+|+|+| +|++||++||+|+||||||||+|+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4788 8999999876 4999999 999999999999999999999999999999999995 2344
Q ss_pred CC------------ceEEEEecccccCc---CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 008750 159 SN------------MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223 (555)
Q Consensus 159 ~~------------~~ig~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (555)
.. ..+++++|.....+ ..||.+++...
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------------------------------------- 203 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------------------------------------- 203 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT--------------------------------------
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh--------------------------------------
Confidence 22 24778888754322 23777664210
Q ss_pred HHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
....++.++++.+||. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+
T Consensus 204 ----------~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 204 ----------DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp ----------CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0113456788899996 56799999999999999999999999999999999999999999988888775
Q ss_pred C---CCceEEEEecCHHHHHhhcceeEEecCCeE--eeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008750 304 K---QDVPMVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (555)
Q Consensus 304 ~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~--~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (555)
+ .|.|||+||||++++..+||+|++|+++.. -.+...+.... . ..........
T Consensus 273 ~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~-------------------~---i~~~~~~~~~ 330 (607)
T 3bk7_A 273 RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN-------------------G---INEFLQGYLK 330 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHH-------------------H---HHHHHHTEET
T ss_pred HHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHH-------------------H---HHHHHhhcch
Confidence 3 489999999999999999999999986421 11222222100 0 0000000000
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCC--CCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEE
Q 008750 379 GANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAII 456 (555)
Q Consensus 379 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~ 456 (555)
. +. .. .......+.+.... ..++++++++|+++.|++. .|+.+||+|++||+++|+
T Consensus 331 ~------------------~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~ 388 (607)
T 3bk7_A 331 D------------------EN-VR--FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIV 388 (607)
T ss_dssp T------------------TT-EE--CCSSCCCCCCSTTSCCCCCCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEE
T ss_pred h------------------hh-hh--ccccccccccCCCcccccCceEEEEeceEEEecce-EEEecccccCCCCEEEEE
Confidence 0 00 00 00001111111111 1346789999999999764 689999999999999999
Q ss_pred CCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhh-ccc-CcHHHHHHHHhhCCCCh
Q 008750 457 GPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKA 534 (555)
Q Consensus 457 G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~-~~~-~~~~~~~~~L~~~~~~~ 534 (555)
||||||||||+|+|+|+++|++|+|.+. ..++|++|++. +.+..||.+++... ... .....+..+|..+++.
T Consensus 389 G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~- 462 (607)
T 3bk7_A 389 GPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII- 462 (607)
T ss_dssp CCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-
T ss_pred CCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-
Confidence 9999999999999999999999999773 46899999853 45678998887653 111 1234578899999996
Q ss_pred hhhccccCCCChhHHhchhcC
Q 008750 535 DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 535 ~~~~~~~~~LSGGek~Rv~La 555 (555)
+..++++.+|||||||||+||
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iA 483 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIA 483 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHH
Confidence 678999999999999999986
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.8e-59 Score=558.71 Aligned_cols=258 Identities=24% Similarity=0.356 Sum_probs=188.9
Q ss_pred HhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCCE
Q 008750 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~ 125 (555)
+......+...+.+..+.+++++....+++......... ......+.|+++||+|+|++ .++|+||||+|++||+
T Consensus 341 ~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~ 418 (1284)
T 3g5u_A 341 VGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH--KPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQT 418 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCC--CCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCC--CCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCE
Confidence 334444556677888888888887654432211100000 01123456999999999964 3699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||+||||||||+++|+|+++|++|+|.++|.+. .||||+|++.++ ..||+||+..+.... .
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~g~~~~-----~ 492 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF-ATTIAENIRYGREDV-----T 492 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCC-SSCHHHHHHHHCSSC-----C
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccC-CccHHHHHhcCCCCC-----C
Confidence 999999999999999999999999999999998653 499999999874 569999997542100 0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+.+...+. .. .....+..+.. |++ ........+|||||||||+|||||+
T Consensus 493 ~~~~~~~~~------------------------~~---~~~~~i~~l~~--g~~-t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 493 MDEIEKAVK------------------------EA---NAYDFIMKLPH--QFD-TLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHHHHHHHH------------------------HT---TCHHHHHHSTT--GGG-CCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------Hh---CcHHHHHhccc--ccc-ccccCCCCccCHHHHHHHHHHHHHh
Confidence 000000000 00 01111222111 222 1234556799999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|+|||||||||+||+.+..++.+.++. .|+|+|+||||++++.. ||+|++|++|++ ...|+++++..
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i-~~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVI-VEQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCC-CCEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHh
Confidence 99999999999999999999999888753 58999999999999976 999999999986 56788877654
No 5
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.3e-57 Score=540.25 Aligned_cols=257 Identities=21% Similarity=0.316 Sum_probs=188.9
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
.+......+..++.+..+.+++++..+.++......... .......+.|+++||+|+|++ .++|+||||+|++|+
T Consensus 368 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~ 445 (1321)
T 4f4c_A 368 ALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAG--RKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQ 445 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCC--CCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc--ccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCc
Confidence 445555556678888888888887765443222111111 111133456999999999963 579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
++||||++|||||||+++|.|+++|++|+|.++|.+. +|+||+|++.+ |+.||+||+..+....
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L-f~~TI~eNI~~g~~~~----- 519 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPAL-FNCTIEENISLGKEGI----- 519 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC-CSEEHHHHHHTTCTTC-----
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCccee-eCCchhHHHhhhcccc-----
Confidence 9999999999999999999999999999999999653 59999999988 7899999997542110
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
..+++.+++.. ..+...+..+-+ |++....++ -.+||||||||++|||||
T Consensus 520 ~~~~v~~a~~~---------------------------a~l~~~i~~lp~--G~~T~vGe~-G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 520 TREEMVAACKM---------------------------ANAEKFIKTLPN--GYNTLVGDR-GTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp CHHHHHHHHHH---------------------------TTCHHHHHHSTT--TTSSEESSS-SCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH---------------------------ccchhHHHcCCC--CCccEecCC-CCCCCHHHHHHHHHHHHH
Confidence 00001111110 011111222111 333333333 358999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+.+|+|||||||||+||+.++..+.+.|.+ .|+|+|+|||+++.+. .||+|++|++|+++ ..|++++.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~iv-e~Gth~eL 639 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVV-EVGDHRAL 639 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEE-EEECHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeee-ccCCHHHH
Confidence 999999999999999999998888888764 5899999999999996 59999999999974 45665554
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-56 Score=490.86 Aligned_cols=356 Identities=23% Similarity=0.288 Sum_probs=252.4
Q ss_pred EeEEEEeCCceeeeeeeEEEE-CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE-----------EEcCCC--------
Q 008750 101 ENISKSYKGVTVLKDVTWEVK-KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-----------IKAKSN-------- 160 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~-~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I-----------~~~g~~-------- 160 (555)
++++.+||.. -|+-..|.+. +||++|||||||||||||+|+|+|+++|++|+| .+.|..
T Consensus 3 ~~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 3567889643 2444455544 899999999999999999999999999999998 344432
Q ss_pred ----ceEEEEecccccC---cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc
Q 008750 161 ----MKIAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~---~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
..+....|..... +..++.+++.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~------------------------------------------------~ 113 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTK------------------------------------------------I 113 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHH------------------------------------------------H
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhc------------------------------------------------c
Confidence 1234444433221 22344433210 0
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
....++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|++ .|.|||+
T Consensus 114 ~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~ 192 (538)
T 3ozx_A 114 DERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192 (538)
T ss_dssp CCSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred hhHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0112456678888985 567999999999999999999999999999999999999999999998887753 3899999
Q ss_pred EecCHHHHHhhcceeEEecCCeEe--eccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAE 389 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~--~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (555)
||||++++..+||+|++|++|... .+...+..- . . ....+.........
T Consensus 193 vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~----~-----~-------------~~~~~~g~~~~~~~------- 243 (538)
T 3ozx_A 193 VDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR----V-----G-------------INNFLKGYLPAENM------- 243 (538)
T ss_dssp ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH----H-----H-------------HHHHHHTEETTTTE-------
T ss_pred EEeChHHHHhhCCEEEEecCCcccccccchhhhHH----H-----H-------------HHHHHhhhchhhhh-------
Confidence 999999999999999999865321 112222110 0 0 00011110000000
Q ss_pred HHHHHHHHhhhhcCccccccceeeccCC-----CCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHH
Q 008750 390 KKLERLQEEEQIEKPFQRKQMKIRFPER-----GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (555)
Q Consensus 390 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKS 464 (555)
.. .+ ....+..... ...++++++++++++.|++. .|..+||+|++||+++|+||||||||
T Consensus 244 ----------~~-r~---~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKS 308 (538)
T 3ozx_A 244 ----------KI-RP---DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKT 308 (538)
T ss_dssp ----------EC-SS---SCCCCSCC----------CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred ----------hc-cc---hhhhccccccccccccccccceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHH
Confidence 00 00 0000000000 11346789999999999874 57888999999999999999999999
Q ss_pred HHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhccc---CcHHHHHHHHhhCCCChhhhcccc
Q 008750 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKV 541 (555)
Q Consensus 465 TLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~ 541 (555)
||+++|+|+++|++|+|.+.+. .++|++|+.. .....||.+++...... .....+..+|..+++. +..++++
T Consensus 309 TLl~~l~Gl~~p~~G~i~~~~~--~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 383 (538)
T 3ozx_A 309 TFARILVGEITADEGSVTPEKQ--ILSYKPQRIF--PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNV 383 (538)
T ss_dssp HHHHHHTTSSCCSBCCEESSCC--CEEEECSSCC--CCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBG
T ss_pred HHHHHHhCCCCCCCcEEEECCe--eeEeechhcc--cccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCCh
Confidence 9999999999999999988754 4689999753 34578999998764322 1224567889999995 5789999
Q ss_pred CCCChhHHhchhcC
Q 008750 542 SLLSGGEKVNQTLV 555 (555)
Q Consensus 542 ~~LSGGek~Rv~La 555 (555)
.+|||||||||+||
T Consensus 384 ~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 384 NDLSGGELQKLYIA 397 (538)
T ss_dssp GGCCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHH
Confidence 99999999999986
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-55 Score=482.63 Aligned_cols=380 Identities=21% Similarity=0.318 Sum_probs=243.2
Q ss_pred eEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-eEEEEecccccCcCccHH
Q 008750 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 102 nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-~ig~v~Q~~~~~~~~tv~ 179 (555)
|++++|+.. ..|++++ .+++||++||+||||||||||+|+|+|+++|++|+|....... .++++ ....+.
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~-------~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF-------RGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHT-------TTSTHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhhee-------cChhhh
Confidence 578999754 4677777 6999999999999999999999999999999999873111000 00000 000111
Q ss_pred HHHHHhhHHHHHH---HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 180 EEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 180 e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
..+.......... ......+.. ........+... .. ........++.++++.+|+. ...+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~-------l~----~~~~~~~~~~~~~l~~~gl~-~~~~~~ 218 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPR---AIKGPVQKVGEL-------LK----LRMEKSPEDVKRYIKILQLE-NVLKRD 218 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHH---HCSSSSSHHHHH-------HH----HHCCSCHHHHHHHHHHHTCT-GGGGSC
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhh---hhcchhhHHHHH-------Hh----hhhhhHHHHHHHHHHHcCCc-chhCCC
Confidence 1000000000000 000000000 000000000000 00 01122346788899999996 567999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++++ +.|.|||+||||++++..+||+|++|++|.
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999999999998888764 458999999999999999999999998764
Q ss_pred Eee--ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccce
Q 008750 334 SRT--YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411 (555)
Q Consensus 334 ~~~--~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 411 (555)
... +...++. ++ . ......+.... +. . .+......
T Consensus 299 ~~~~~~~~~~~~----~~-----~-------------~~~~~~~~~~~------------------~~-~--~~~~~~~~ 335 (608)
T 3j16_B 299 SVYGVVTLPASV----RE-----G-------------INIFLDGHIPA------------------EN-L--RFRTEALQ 335 (608)
T ss_dssp TTEEEECCCEEH----HH-----H-------------HHHHHHTEETT------------------TT-E--ECSSSCCC
T ss_pred cccceecCchhH----HH-----H-------------HHHhhccccch------------------hh-h--cccccccc
Confidence 210 1111110 00 0 00000000000 00 0 00000011
Q ss_pred eeccCCCCCCCceEEEEeeeEEcCC-ccceeceEEEEecC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 412 IRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERG-----EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~G-----e~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
+... .......+...++.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|+..
T Consensus 336 ~~~~--~~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--- 410 (608)
T 3j16_B 336 FRIA--DATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--- 410 (608)
T ss_dssp CCCS--SSSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---
T ss_pred cccc--ccccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---
Confidence 1110 0011112223567788876 35789999999999 88999999999999999999999999999742
Q ss_pred ceeeeEEEecCCccCCCCCCCHHHHHHhhccc--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 486 ~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
....++|++|+.. .....||.+++...... .....+..+|..+++. +..++++.+|||||||||+||
T Consensus 411 ~~~~i~~~~q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iA 479 (608)
T 3j16_B 411 PKLNVSMKPQKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIV 479 (608)
T ss_dssp CSCCEEEECSSCC--CCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHH
T ss_pred cCCcEEEeccccc--ccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHH
Confidence 2345789999853 33456999988653221 2344567889999996 578999999999999999986
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.2e-52 Score=473.38 Aligned_cols=276 Identities=18% Similarity=0.274 Sum_probs=172.6
Q ss_pred CceeeeeeeEEEECCCEEEEEcCCCccHHHHH---------------------HHHHcCCCCCceE-------EEEcCCC
Q 008750 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL---------------------RIIAGQEEPDSGN-------VIKAKSN 160 (555)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl---------------------k~i~G~~~p~~G~-------I~~~g~~ 160 (555)
...+|+||||+|++||++|||||||||||||+ +++.|+..|+.|. |.+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45699999999999999999999999999998 9999999998554 4444432
Q ss_pred ------ceEEEEecccccC-------------------cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHH
Q 008750 161 ------MKIAFLSQEFEVS-------------------MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215 (555)
Q Consensus 161 ------~~ig~v~Q~~~~~-------------------~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (555)
..+++++|.+.+. +.+||.+|+...... .... .+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~~~-------------~~------ 168 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGL--ELTE-------------KE------ 168 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhcc--ccch-------------hh------
Confidence 2345555543321 234555554321000 0000 00
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHH
Q 008750 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLD 293 (555)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~ 293 (555)
.........++..+ ..+++.+||.....++++.+|||||||||+|||||+.+|+ +|||||||++||+.
T Consensus 169 ---------~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 169 ---------AQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ---------hHHHHHHHHHHHHH-HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00000000111122 2468889997656789999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008750 294 TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364 (555)
Q Consensus 294 ~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~ 364 (555)
.+.++.++|+ +.|.|||+||||++++. .||+|++| ++|++ ++.|++.++......
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i-~~~g~~~~~~~~~~~-------------- 302 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNS-------------- 302 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSE-EEEECHHHHHTCTTC--------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEE-EEecCHHHHhcCchh--------------
Confidence 9999988774 45899999999999886 59999999 77775 567776654321000
Q ss_pred HHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceE
Q 008750 365 EIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444 (555)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vs 444 (555)
. ...+ +.. . ...+... .........+++.+.. ..+++++|
T Consensus 303 ----~---~~~~------------------~~~-~-~~~~~~~--------~~~~~~~~~~~~~~~~-----~~~L~~vs 342 (670)
T 3ux8_A 303 ----L---TGQY------------------LSG-K-KFIPIPA--------ERRRPDGRWLEVVGAR-----EHNLKNVS 342 (670)
T ss_dssp ----H---HHHH------------------HTT-S-SCCCCCS--------SCCCCCSCEEEEEEEC-----STTCCSEE
T ss_pred ----H---HHHH------------------hcc-c-ccccccc--------ccccccccceeecCcc-----ccccccce
Confidence 0 0000 000 0 0000000 0011123445555543 35799999
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
|+|++||+++|+||||||||||+++|+
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 999999999999999999999998754
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.7e-49 Score=409.29 Aligned_cols=212 Identities=25% Similarity=0.427 Sum_probs=182.7
Q ss_pred CCCccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------
Q 008750 93 SISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------- 161 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------- 161 (555)
..+++|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 44568999999999953 4699999999999999999999999999999999999999999999998542
Q ss_pred ------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 162 ------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
.||||||++.+++.+||.+|+..+... ......+.
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~---------------------------------------~~~~~~~~ 140 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEV 140 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------SCCCHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHH
Confidence 599999999998999999998643210 01122344
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEE
Q 008750 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVI 311 (555)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIi 311 (555)
.+++.++|+.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++|+ +.|.|||+
T Consensus 141 ~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 141 KRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp HHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 56788999999996 56799999999999999999999999999999999999999999999888775 35899999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||++++.++||||++|++|++ +..|+..+..
T Consensus 220 vTHdl~~~~~~aDrv~vl~~G~i-v~~g~~~ev~ 252 (366)
T 3tui_C 220 ITHEMDVVKRICDCVAVISNGEL-IEQDTVSEVF 252 (366)
T ss_dssp EESCHHHHHHHCSEEEEEETTEE-EECCBHHHHH
T ss_pred EecCHHHHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 99999999999999999999997 4678776654
No 10
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.1e-49 Score=409.68 Aligned_cols=209 Identities=26% Similarity=0.385 Sum_probs=182.3
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~i 163 (555)
++|+++||+|+|++.++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 369999999999999999999999999999999999999999999999999999999999988532 59
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|||+|++.+++.+||+||+..+... ......+..+++.+++
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l 123 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGN---------------------------------------GKGRTAQERQRIEAML 123 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTT---------------------------------------SSCCSHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHH---------------------------------------cCCChHHHHHHHHHHH
Confidence 9999999999999999998654210 0112233456788899
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l 319 (555)
+.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.+ ++.|.|+|+||||++++
T Consensus 124 ~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 124 ELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA 202 (359)
T ss_dssp HHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred HHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999996 5789999999999999999999999999999999999999999988877643 45699999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
..+||||++|++|++ ...|+..+.+
T Consensus 203 ~~~aDri~vl~~G~i-~~~g~~~el~ 227 (359)
T 3fvq_A 203 LQYADRIAVMKQGRI-LQTASPHELY 227 (359)
T ss_dssp HHHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHHCCEEEEEECCEE-EEEeCHHHHH
Confidence 999999999999997 4567766544
No 11
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.3e-49 Score=395.39 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=180.3
Q ss_pred ccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------e
Q 008750 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ 162 (555)
++|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 46999999999975 4699999999999999999999999999999999999999999999998643 5
Q ss_pred EEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 163 ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
||||||++. .++..||.+|+..... . ......+..+++.+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~-----------------~----------------------~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAV-----------------N----------------------MKLPEDEIRKRVDN 126 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHH-----------------T----------------------SCCCHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHH-----------------H----------------------cCCCHHHHHHHHHH
Confidence 999999974 4467899999864310 0 01122234567888
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|.|||+||||++
T Consensus 127 ~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 99999995 57799999999999999999999999999999999999999999999888764 24899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++..+||+|++|++|++ ++.|+..++..
T Consensus 206 ~~~~~~drv~~l~~G~i-~~~g~~~~~~~ 233 (275)
T 3gfo_A 206 IVPLYCDNVFVMKEGRV-ILQGNPKEVFA 233 (275)
T ss_dssp SGGGGCSEEEEEETTEE-EEEECHHHHTH
T ss_pred HHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 99999999999999997 46788777654
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.9e-48 Score=389.62 Aligned_cols=211 Identities=24% Similarity=0.407 Sum_probs=180.4
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------e
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ 162 (555)
.++|+++||+|+|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 22 ~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred hheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 3479999999999988899999999999999999999999999999999999999999999998532 4
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
||||+|++.+++.+||.||+...... .. ........+++.++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~ 143 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMK--------------VR------------------------KWPREKAEAKAMEL 143 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHH--------------TS------------------------CCCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHH--------------Hc------------------------CCCHHHHHHHHHHH
Confidence 99999999888888999998532100 00 00111234567888
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++
T Consensus 144 l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 144 LDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp HHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 9999995 567899999999999999999999999999999999999999999999888743 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
..+||+|++|++|++. +.|+..++.
T Consensus 223 ~~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
T 2olj_A 223 REVGDRVLFMDGGYII-EEGKPEDLF 247 (263)
T ss_dssp HHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999974 567766554
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-48 Score=408.17 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
.|+++||+|+|++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999999854 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||.||+..+... ......+..+++.++++.+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQL 123 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998643210 012233456778899999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp G-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred c-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence 6 57899999999999999999999999999999999999999999988887764 348999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++|++|++. ..|+..+++
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (381)
T 3rlf_A 203 KIVVLDAGRVA-QVGKPLELY 222 (381)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEeCHHHHH
Confidence 99999999974 556665543
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-48 Score=390.11 Aligned_cols=210 Identities=26% Similarity=0.449 Sum_probs=179.8
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------------- 161 (555)
++|+++||+++|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 369999999999988999999999999999999999999999999999999999999999988432
Q ss_pred ---------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 162 ---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 162 ---------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
.||||+|++.+++.+||.||+...... .. ....
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~--------------~~------------------------~~~~ 126 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLSK 126 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------TT------------------------CCCH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH--------------hc------------------------CCCH
Confidence 399999999888889999998532100 00 0011
Q ss_pred ccHHHHHHHHhhhcCCCccc-cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCce
Q 008750 233 DTLDAKVSKLMPELGFTADD-GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~t 308 (555)
.....++.++++.+|+. .. .++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|.|
T Consensus 127 ~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~t 205 (262)
T 1b0u_A 127 HDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 205 (262)
T ss_dssp HHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 12345678889999996 45 7899999999999999999999999999999999999999999999888743 4899
Q ss_pred EEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+||||++++..+||+|++|++|+++ ..|+..++.
T Consensus 206 vi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 241 (262)
T 1b0u_A 206 MVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF 241 (262)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999974 567776654
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.1e-48 Score=381.03 Aligned_cols=199 Identities=28% Similarity=0.397 Sum_probs=172.8
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------c
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~ 161 (555)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 46999999999988889999999999999999999999999999999999999999999998843 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.|+|++|++.+++.+||.||+..+.. .. ........+++.+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~ 123 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPML---------------KM------------------------GKPKKEAKERGEY 123 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHH---------------HT------------------------TCCHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHH---------------Hc------------------------CCCHHHHHHHHHH
Confidence 49999999988888999999853210 00 0011123456788
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||+++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 124 LLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp HHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 89999996 567899999999999999999999999999999999999999999999888743 48999999999999
Q ss_pred HHhhcceeEEecCCeEe
Q 008750 319 LDQLCTKIVETEMGVSR 335 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~ 335 (555)
+ .+||+|++|++|++.
T Consensus 203 ~-~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 203 A-ELTHRTLEMKDGKVV 218 (224)
T ss_dssp H-TTSSEEEEEETTEEE
T ss_pred H-HhCCEEEEEECCEEE
Confidence 8 799999999999874
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.7e-48 Score=384.42 Aligned_cols=203 Identities=27% Similarity=0.381 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
+|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999999999999998532
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.||||+|++.+++.+||.||+..+.. .... ......+..++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~---------------~~~~---------------------~~~~~~~~~~~ 124 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLI---------------FKYR---------------------GAMSGEERRKR 124 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHH---------------TCSS---------------------SCCCHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHH---------------hhhc---------------------cCCCHHHHHHH
Confidence 49999999999888999999864310 0000 00111223456
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSH 314 (555)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|.|||+|||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 788899999975456899999999999999999999999999999999999999999999888753 3899999999
Q ss_pred CHHHHHhhcceeEEecCCeEee
Q 008750 315 DRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~ 336 (555)
|++.+ .+||+|++|++|++..
T Consensus 205 d~~~~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 205 DINVA-RFGERIIYLKDGEVER 225 (235)
T ss_dssp CHHHH-TTSSEEEEEETTEEEE
T ss_pred CHHHH-HhCCEEEEEECCEEEE
Confidence 99965 7999999999999743
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.8e-48 Score=387.72 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=180.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~ 165 (555)
++|+++||++.|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 579999999999999999999999999999999999999999999999999999999999998642 4999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..||.||+..... ........+++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~-----------------------------------------~~~~~~~~~~~~~~l~~ 128 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRA-----------------------------------------PYGGSQDRQALQQVMAQ 128 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGT-----------------------------------------TSCSTTHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhh-----------------------------------------hcCcHHHHHHHHHHHHH
Confidence 9999988888999999864320 00122345677888999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhcc------CCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~------~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
+|+. ...++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|++ .+.|||+||||
T Consensus 129 ~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 129 TDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 9996 46789999999999999999999999 9999999999999999999999887753 35799999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||||++|++|++ .+.|+..++
T Consensus 208 l~~~~~~~d~v~vl~~G~i-~~~g~~~~~ 235 (266)
T 4g1u_C 208 LNLAALYADRIMLLAQGKL-VACGTPEEV 235 (266)
T ss_dssp HHHHHHHCSEEEEEETTEE-EEEECHHHH
T ss_pred HHHHHHhCCEEEEEECCEE-EEEcCHHHH
Confidence 9999999999999999997 456776554
No 18
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-48 Score=384.65 Aligned_cols=210 Identities=26% Similarity=0.383 Sum_probs=179.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAF 165 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~ 165 (555)
.++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|||
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 4669999999999988999999999999999999999999999999999999999999999998542 5999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++.+||.||+..... +. .....+...++.++++.
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~ 133 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAG---------------FY------------------------ASSSSEIEEMVERATEI 133 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHH---------------HH------------------------CCCHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHH
Confidence 9999988888899999853210 00 01111223567788999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++..+
T Consensus 134 ~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL 212 (256)
T ss_dssp HCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT
T ss_pred CCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence 9996 467899999999999999999999999999999999999999999999888753 589999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+|++|++|++. +.|+..++.
T Consensus 213 ~d~v~~l~~G~i~-~~g~~~~~~ 234 (256)
T 1vpl_A 213 CDRIALIHNGTIV-ETGTVEELK 234 (256)
T ss_dssp CSEEEEEETTEEE-EEEEHHHHH
T ss_pred CCEEEEEECCEEE-EecCHHHHH
Confidence 9999999999974 567766553
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.4e-48 Score=381.51 Aligned_cols=208 Identities=22% Similarity=0.326 Sum_probs=177.1
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .||
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 469999999999988899999999999999999999999999999999999999999999998532 399
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++.+||.||+..... . ........+++.++++
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~-----------------~-----------------------~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAY-----------------N-----------------------RKDKEGIKRDLEWIFS 124 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGT-----------------T-----------------------CCCSSHHHHHHHHHHH
T ss_pred EEecCCccCCCCcHHHHHHHhhh-----------------c-----------------------CCCHHHHHHHHHHHHH
Confidence 99999988888899999864210 0 0011223345666777
Q ss_pred hcC-CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 245 ELG-FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lg-l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
.++ +. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++.
T Consensus 125 ~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 125 LFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 774 74 456889999999999999999999999999999999999999999999888753 5899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. +.|+..++.
T Consensus 204 ~~~d~v~~l~~G~i~-~~g~~~~~~ 227 (240)
T 1ji0_A 204 KVAHYGYVLETGQIV-LEGKASELL 227 (240)
T ss_dssp HHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHHHh
Confidence 999999999999974 567665543
No 20
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.9e-48 Score=399.70 Aligned_cols=211 Identities=27% Similarity=0.441 Sum_probs=183.1
Q ss_pred CCccEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEE
Q 008750 94 ISSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIA 164 (555)
Q Consensus 94 ~~~~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig 164 (555)
.+++|+++||+++| +++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 45679999999999 88889999999999999999999999999999999999999999999999854 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
||+|++.+++.+||+||+..+... ......+..+++.++++
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~ 131 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLRE---------------------------------------KRVPKDEMDARVRELLR 131 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999999998999999998643210 00112234567888999
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++.
T Consensus 132 ~~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~ 210 (355)
T 1z47_A 132 FMRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEAL 210 (355)
T ss_dssp HTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred HcCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH
Confidence 99996 567999999999999999999999999999999999999999999998887643 4899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. ..|+..+++
T Consensus 211 ~~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 211 EVADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp HHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999974 567766543
No 21
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.5e-48 Score=388.32 Aligned_cols=218 Identities=20% Similarity=0.247 Sum_probs=179.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~i 163 (555)
+++|+++||+++|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3469999999999988999999999999999999999999999999999999999999999998532 49
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH---hcCcccHHHHHH
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ---AVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 240 (555)
||++|++.+++..||.||+..+.... . .. ... ..+. .........++.
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~----------------~-~~--~~~----------~~~~~~~~~~~~~~~~~~~ 135 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICP----------------G-ES--PLN----------SLFYKKWIPKEEEMVEKAF 135 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTST----------------T-SC--HHH----------HHHHCSSCCCCHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhh----------------c-cC--ccc----------ccccccccCCHHHHHHHHH
Confidence 99999998888899999986431000 0 00 000 0000 001122345678
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++
T Consensus 136 ~~l~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 136 KILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp HHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred HHHHHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 899999996 567899999999999999999999999999999999999999999999888753 4899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
++..+||+|++|++|++. +.|+..+
T Consensus 215 ~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 215 IVLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp TTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHHHhCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999999974 4566655
No 22
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-47 Score=398.14 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=181.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 5899999999988889999999999999999999999999999999999999999999999854 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||.||+..+... ......+..+++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLEL---------------------------------------RKAPREEIDKKVREVAKMLHI 123 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998643210 001122345678889999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 124 D-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp T-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999998887743 48999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|+..+.+
T Consensus 203 ri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 203 RIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999974 557766543
No 23
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-47 Score=398.47 Aligned_cols=208 Identities=25% Similarity=0.394 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|+++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 5899999999998889999999999999999999999999999999999999999999999853 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++++||+||+..+... . .....+..+++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------~------------------------~~~~~~~~~~v~~~l~~~~L 123 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRA---------------R------------------------RISKDEVEKRVVEIARKLLI 123 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSS---------------S------------------------CSHHHHTTHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998653210 0 00011224567889999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 124 D-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp G-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999998887743 48999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|+..+.+
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (359)
T 2yyz_A 203 RIAVFNQGKLV-QYGTPDEVY 222 (359)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999974 567766543
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4e-47 Score=397.27 Aligned_cols=208 Identities=29% Similarity=0.449 Sum_probs=180.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ce
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ 162 (555)
+|+++||+++|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 5899999999998889999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
||||+|++.+++++||.+|+..+... ......+..+++.++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~ 123 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKL---------------------------------------RKVPRQEIDQRVREV 123 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998999999998643210 001122345678889
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
++.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||+++
T Consensus 124 l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 124 AELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 9999996 567999999999999999999999999999999999999999999988887643 48999999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+..+||+|++|++|++. ..|+..+.+
T Consensus 203 a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 203 AMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp HHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999999974 567766554
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.7e-47 Score=398.01 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=175.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 5999999999998889999999999999999999999999999999999999999999999853 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++++||+||+..+... ......+..+++.++++.+|+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 131 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKI---------------------------------------KKFPKDEIDKRVRWAAELLQI 131 (372)
T ss_dssp ------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998653210 001112335678889999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 132 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 132 E-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp G-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred h-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 6 577999999999999999999999999999999999999999999998887753 48999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|+..+.+
T Consensus 211 ri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 211 RIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999974 567766543
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.1e-47 Score=397.08 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCce--eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------c
Q 008750 97 GVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~ 161 (555)
+|+++||+++|++.+ +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998887 9999999999999999999999999999999999999999999998743 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.||||+|++.+++.+||.||+..+... ......+..+++.+
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~ 123 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 599999999998999999998653210 00111233567888
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~ 317 (555)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++
T Consensus 124 ~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999996 567999999999999999999999999999999999999999999988887643 4899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++..+||+|++|++|++. ..|+..+.+
T Consensus 203 ~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 203 DIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp HHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999974 567766543
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.1e-47 Score=392.85 Aligned_cols=203 Identities=27% Similarity=0.409 Sum_probs=177.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q 168 (555)
+|+++||+++|+++ +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+. .||||+|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 48999999999888 99999999999999999999999999999999999999999999998543 5999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||+||+..+... .... .. +++.++++.+|+
T Consensus 80 ~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~--~~-~~v~~~l~~~~L 117 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KKIK--DP-KRVLDTARDLKI 117 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HCCC--CH-HHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHH---------------------------------------cCCC--HH-HHHHHHHHHcCC
Confidence 99998999999998643100 0011 11 567888999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 118 ~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 56799999999999999999999999999999999999999999998888764 358999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~ 344 (555)
+|++|++|++. ..|+..++
T Consensus 197 ri~vl~~G~i~-~~g~~~~~ 215 (348)
T 3d31_A 197 RIAVVMDGKLI-QVGKPEEI 215 (348)
T ss_dssp EEEEESSSCEE-EEECHHHH
T ss_pred EEEEEECCEEE-EECCHHHH
Confidence 99999999974 55766554
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9.1e-47 Score=375.85 Aligned_cols=208 Identities=20% Similarity=0.298 Sum_probs=175.5
Q ss_pred ccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 96 ~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
++|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+. ..|+|++|++.+++
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~---~~i~~v~q~~~~~~ 79 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY---QSIGFVPQFFSSPF 79 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC---SCEEEECSCCCCSS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe---ccEEEEcCCCccCC
Confidence 3699999999998 8889999999999999999999999999999999999999999999853 46999999998888
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.||+....... .... .........++.++++.+|+. +..+
T Consensus 80 ~~tv~enl~~~~~~~--------------~~~~---------------------~~~~~~~~~~~~~~l~~~~l~-~~~~ 123 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTH--------------INTF---------------------AKPKSHDYQVAMQALDYLNLT-HLAK 123 (253)
T ss_dssp CCBHHHHHHGGGGGG--------------SCTT---------------------CCCCHHHHHHHHHHHHHTTCG-GGTT
T ss_pred CCCHHHHHHHhhhhh--------------cccc---------------------cCCCHHHHHHHHHHHHHcCCh-HHhc
Confidence 899999986431000 0000 000112235677889999996 5678
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ . |.|||+||||++++..+||+|++|+
T Consensus 124 ~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 203 (253)
T 2nq2_C 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN 203 (253)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 3 8999999999999999999999999
Q ss_pred CCeEeeccCChHHH
Q 008750 331 MGVSRTYEGNYSQY 344 (555)
Q Consensus 331 ~G~~~~~~G~y~~~ 344 (555)
+|+ .+.|+..++
T Consensus 204 ~G~--~~~g~~~~~ 215 (253)
T 2nq2_C 204 KQN--FKFGETRNI 215 (253)
T ss_dssp TTE--EEEEEHHHH
T ss_pred CCe--EecCCHHHH
Confidence 998 556776554
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.2e-47 Score=386.43 Aligned_cols=215 Identities=22% Similarity=0.350 Sum_probs=169.4
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
.+.|+++||+|+|+ +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 45699999999995 57899999999999999999999999999999999999999999999998643 59
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|||+|++.++ ..||+||+..+..... ...+...++ . ..+...+..+.
T Consensus 131 ~~v~Q~~~lf-~~Tv~eNi~~~~~~~~-----~~~~~~~~~------------------------~---~~l~~~i~~lp 177 (306)
T 3nh6_A 131 GVVPQDTVLF-NDTIADNIRYGRVTAG-----NDEVEAAAQ------------------------A---AGIHDAIMAFP 177 (306)
T ss_dssp EEECSSCCCC-SEEHHHHHHTTSTTCC-----HHHHHHHHH------------------------H---HTCHHHHHHST
T ss_pred EEEecCCccC-cccHHHHHHhhcccCC-----HHHHHHHHH------------------------H---hCcHHHHHhcc
Confidence 9999999874 6799999975421000 000000000 0 00111111111
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
. |+. ...++...+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.+ .++|+|+||||++.+..
T Consensus 178 ~--gl~-t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 178 E--GYR-TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254 (306)
T ss_dssp T--GGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT
T ss_pred c--hhh-hHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc
Confidence 1 332 234566789999999999999999999999999999999999999999888754 47899999999999986
Q ss_pred hcceeEEecCCeEeeccCChHHHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
||+|++|++|++ +..|++.++...
T Consensus 255 -aD~i~vl~~G~i-v~~G~~~el~~~ 278 (306)
T 3nh6_A 255 -ADQILVIKDGCI-VERGRHEALLSR 278 (306)
T ss_dssp -CSEEEEEETTEE-EEEECHHHHHHH
T ss_pred -CCEEEEEECCEE-EEECCHHHHHhc
Confidence 999999999997 467888877653
No 30
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.6e-47 Score=384.79 Aligned_cols=214 Identities=25% Similarity=0.371 Sum_probs=177.4
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------ 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------ 161 (555)
..++|+++||+++|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 34579999999999988999999999999999999999999999999999999999999999998543
Q ss_pred eEEEEecccccCc--CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 KIAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 ~ig~v~Q~~~~~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.|||++|++.+.+ .+||+||+..+....... . ........+++
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~-----------~------------------------~~~~~~~~~~~ 142 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV-----------Y------------------------QDIDDEIRNEA 142 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC--------------------------------------------CCHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhcccc-----------c------------------------cCCcHHHHHHH
Confidence 3999999986544 459999986432100000 0 00011224567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceE--EEEec
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM--VIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tv--IiiSH 314 (555)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|| |+|||
T Consensus 143 ~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtH 221 (279)
T 2ihy_A 143 HQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221 (279)
T ss_dssp HHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEec
Confidence 7889999995 567899999999999999999999999999999999999999999999988753 38899 99999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|++++..+||+|++|++|++. +.|+..++
T Consensus 222 d~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 222 FIEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp CGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred CHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999974 56776554
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-47 Score=374.46 Aligned_cols=203 Identities=27% Similarity=0.358 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|++ +|+||||+|++ |++||+||||||||||+|+|+|+++|++|+|.++|.+ ..|||++|
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 3789999999976 59999999999 9999999999999999999999999999999999843 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||+||+..+... .......+++.++++.+|+
T Consensus 78 ~~~l~~~ltv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l 116 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGI 116 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTC
T ss_pred CCccCCCCcHHHHHHHHHHH-----------------------------------------cCCchHHHHHHHHHHHcCC
Confidence 99888889999998643200 0000013457788999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++++..+||
T Consensus 117 ~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 195 (240)
T 2onk_A 117 A-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp T-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred H-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 467899999999999999999999999999999999999999999999988753 38999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. +.|+..++.
T Consensus 196 ~i~~l~~G~i~-~~g~~~~~~ 215 (240)
T 2onk_A 196 EVAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EECCHHHHH
Confidence 99999999974 567766553
No 32
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-46 Score=377.93 Aligned_cols=208 Identities=26% Similarity=0.360 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeC--C---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEE
Q 008750 97 GVKLENISKSYK--G---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~--~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig 164 (555)
+|+++||+++|+ + +++|+||||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+. .||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 4 5799999999999999999999999999999999999999999999998542 599
Q ss_pred EEeccc-ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~-~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
||+|++ ..++..||.||+...... ........+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~----------------------------------------~~~~~~~~~~~~~~l 121 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKN----------------------------------------FYPDRDPVPLVKKAM 121 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTT----------------------------------------TCTTSCSHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHh----------------------------------------cCCHHHHHHHHHHHH
Confidence 999996 455778999998542100 001123345678889
Q ss_pred hhcCCCc-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 244 PELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~-~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
+.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++
T Consensus 122 ~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp HHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999962 467899999999999999999999999999999999999999999999888743 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
..+||+|++|++|++. +.|+..+..
T Consensus 202 ~~~~d~v~~l~~G~i~-~~g~~~~~~ 226 (266)
T 2yz2_A 202 INHVDRVVVLEKGKKV-FDGTRMEFL 226 (266)
T ss_dssp GGGCSEEEEEETTEEE-EEEEHHHHH
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999874 567665543
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.9e-46 Score=374.31 Aligned_cols=217 Identities=19% Similarity=0.262 Sum_probs=177.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~----------- 161 (555)
.++|+++||+|+|+++++|+||||+|++||+++|+|+||||||||+|+|+|+ ++|++|+|.++|.+.
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4579999999999888999999999999999999999999999999999999 578999999998532
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.|+|++|++.+++.+||.+|+....... .. ... . ......+...++.+
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~----------~~-~~~-~--------------------~~~~~~~~~~~~~~ 145 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAV----------RS-YRG-Q--------------------ETLDRFDFQDLMEE 145 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHH----------HH-GGG-C--------------------CCCCHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhh----------hh-hhc-c--------------------ccCCHHHHHHHHHH
Confidence 3999999998888899999875321100 00 000 0 00011123456788
Q ss_pred HhhhcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
+++.+|+.....++++. +|||||||||+|||||+.+|+||||||||++||+.+++.+.++|++ .|.|||+||||++
T Consensus 146 ~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 146 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred HHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 89999996556788887 5999999999999999999999999999999999999999998754 4889999999999
Q ss_pred HHHhh-cceeEEecCCeEeeccCChHHH
Q 008750 318 FLDQL-CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 318 ~l~~~-~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++..+ ||+|++|++|++. +.|+..+.
T Consensus 226 ~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 226 ILDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp GGGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred HHHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 99876 9999999999974 55665543
No 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.1e-46 Score=372.86 Aligned_cols=209 Identities=24% Similarity=0.304 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------eE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------KI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~-----------~i 163 (555)
+|+++||+|+|+++++|+||||+|++||+++|+|+||||||||+|+|+|+ ++|++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999988999999999999999999999999999999999999 889999999998532 38
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++.+||.+|+...... .... .....+...++.+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~--------------~~~~----------------------~~~~~~~~~~~~~~l 126 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQA--------------KLGR----------------------EVGVAEFWTKVKKAL 126 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHH--------------HHTS----------------------CCCHHHHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHh--------------hccc----------------------cCCHHHHHHHHHHHH
Confidence 9999999888889999998532100 0000 001112235677889
Q ss_pred hhcCCCccccCCCCCC-CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVAS-FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~-LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l 319 (555)
+.+|+.....++++.+ |||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|.|||+||||++++
T Consensus 127 ~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 127 ELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp HHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred HHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 9999965567899999 99999999999999999999999999999999999999988874 3589999999999999
Q ss_pred Hhh-cceeEEecCCeEeeccCChH
Q 008750 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 320 ~~~-~dri~~l~~G~~~~~~G~y~ 342 (555)
..+ ||+|++|++|++. +.|+..
T Consensus 207 ~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 207 NYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp GTSCCSEEEEEETTEEE-EEESHH
T ss_pred HHhcCCEEEEEECCEEE-EEeCHH
Confidence 888 5999999999974 456654
No 35
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.7e-45 Score=370.38 Aligned_cols=213 Identities=22% Similarity=0.357 Sum_probs=171.4
Q ss_pred CccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
.++|+++||+|+|++ +++|+||||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 356999999999976 6899999999999999999999999999999999999999999999998542
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.|+||+|++.++. .||+||+..+... ......+.. ......+.+
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~------------------~~~~~~~~~-----------------~~~~~~~~~ 137 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTR------------------TPTMEEITA-----------------VAMESGAHD 137 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSS------------------CCCHHHHHH-----------------HHHHHTCHH
T ss_pred cEEEEecCCcccc-ccHHHHHhhhccc------------------CChHHHHHH-----------------HHHHHhHHH
Confidence 4999999998755 6999998653210 000000000 000112344
Q ss_pred Hhhhc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
+++.+ |+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 138 ~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 138 FISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp HHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred HHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 55555 554 356788999999999999999999999999999999999999999999998753 38899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++++.. ||+|++|++|++. ..|+..++..
T Consensus 217 ~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 245 (271)
T 2ixe_A 217 LSLAER-AHHILFLKEGSVC-EQGTHLQLME 245 (271)
T ss_dssp HHHHTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999974 9999999999874 5677766543
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.5e-45 Score=365.87 Aligned_cols=209 Identities=22% Similarity=0.401 Sum_probs=164.2
Q ss_pred cEEEEeEEEEe--CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEE
Q 008750 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig 164 (555)
.|+++||+|+| +++++|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 38999999999 357899999999999999999999999999999999999999999999998532 499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
||+|++.++. .||+||+....... . .+.+...++ .. .+.++++
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~~~~-~----~~~~~~~l~------------------------~~-------~l~~~~~ 129 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLANPGM-S----VEKVIYAAK------------------------LA-------GAHDFIS 129 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTCTTC-C----HHHHHHHHH------------------------HH-------TCHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhccCCCC-C----HHHHHHHHH------------------------Hh-------ChHHHHH
Confidence 9999988754 69999985431000 0 000000000 00 0111222
Q ss_pred hc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHH
Q 008750 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~ 320 (555)
.+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++.
T Consensus 130 ~~~~gl~-~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 130 ELREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp TSTTGGG-CBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hCcchhh-hhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 22 332 234667889999999999999999999999999999999999999999988754 4899999999999986
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++. +.|+..++.
T Consensus 209 -~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 209 -NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp -TSSEEEEEETTEEE-EEECHHHHH
T ss_pred -hCCEEEEEECCEEE-EECCHHHHH
Confidence 59999999999974 567766554
No 37
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-46 Score=361.24 Aligned_cols=190 Identities=23% Similarity=0.310 Sum_probs=165.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEeccc
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~~ 170 (555)
.+|+++||+++|++ ++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+|++|++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 46999999999988 99999999999999999999999999999999999999999999999864 3699999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++.+||.||+..... . ... ... ..++.++++.+|+..
T Consensus 88 ~~~~~~tv~enl~~~~~---------------~------------------------~~~-~~~-~~~~~~~l~~~gl~~ 126 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVAS---------------L------------------------YGV-KVN-KNEIMDALESVEVLD 126 (214)
T ss_dssp CCCTTSBHHHHHHHHHH---------------H------------------------TTC-CCC-HHHHHHHHHHTTCCC
T ss_pred cCCCCCCHHHHHHHHHH---------------h------------------------cCC-chH-HHHHHHHHHHcCCCc
Confidence 88788899999853210 0 001 112 456788899999974
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeE
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
. ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++..+||+|+
T Consensus 127 -~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 127 -L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp -T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred -C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 4 888999999999999999999999999999999999999999998888753 47899999999999999999987
Q ss_pred Ee
Q 008750 328 ET 329 (555)
Q Consensus 328 ~l 329 (555)
.+
T Consensus 205 ~~ 206 (214)
T 1sgw_A 205 KY 206 (214)
T ss_dssp GG
T ss_pred Ee
Confidence 54
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-45 Score=367.92 Aligned_cols=199 Identities=23% Similarity=0.302 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEE-
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIA- 164 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig- 164 (555)
+|+++||+++|++ +++|+|+||+|+ |++++|+|+||||||||+|+|+|++ |++|+|.++|.+. .|+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 4899999999976 789999999999 9999999999999999999999999 9999999998532 599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+ ..||.||+..... + . .....++.++++
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~---------------~---------------------------~-~~~~~~~~~~l~ 113 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEE---------------L---------------------------K-GLDRDLFLEMLK 113 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHH---------------H---------------------------T-CCCHHHHHHHHH
T ss_pred EeCCCCcc--CCcHHHHHHHhhh---------------h---------------------------c-chHHHHHHHHHH
Confidence 99999876 8899999853210 0 0 112345778889
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcc
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~d 324 (555)
.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++...|||+||||++++..+||
T Consensus 114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 99996346789999999999999999999999999999999999999999999999997653399999999999999999
Q ss_pred -eeEEecCCeEeeccCChHH
Q 008750 325 -KIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 325 -ri~~l~~G~~~~~~G~y~~ 343 (555)
+|++|++|++. +.|+..+
T Consensus 194 ~~i~~l~~G~i~-~~g~~~~ 212 (263)
T 2pjz_A 194 YKAYFLVGNRLQ-GPISVSE 212 (263)
T ss_dssp SEEEEEETTEEE-EEEEHHH
T ss_pred ceEEEEECCEEE-EecCHHH
Confidence 99999999874 5566544
No 39
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.8e-45 Score=363.99 Aligned_cols=198 Identities=28% Similarity=0.329 Sum_probs=171.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~ 165 (555)
.+|+++||+++ ++|+||||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.+. .|+|
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 36899999986 6999999999999999999999999999999999999999 9999998542 4999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..||+||+..... .... ..++.++++.
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~-~~~~~~~l~~ 113 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQH-------------------------------------------DKTR-TELLNDVAGA 113 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCS-------------------------------------------STTC-HHHHHHHHHH
T ss_pred ECCCCccCCCCcHHHHHHHhhc-------------------------------------------cCCc-HHHHHHHHHH
Confidence 9999988788899999853210 0001 4457778889
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCC-------EEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecC
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD-------LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~-------lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd 315 (555)
+|+. ...++++.+|||||||||+|||||+.+|+ +|||||||++||+.++..+.++|++ .|.|||+||||
T Consensus 114 ~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 114 LALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp TTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9995 56788999999999999999999999999 9999999999999999999888753 48999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||+|++|++|++. +.|+..++
T Consensus 193 ~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 220 (249)
T 2qi9_C 193 LNHTLRHAHRAWLLKGGKML-ASGRREEV 220 (249)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999874 55766554
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.6e-44 Score=354.62 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=162.0
Q ss_pred ccEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 96 ~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
.+|+++||+++|+ ++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++| .|+|++|++.++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCccc
Confidence 4699999999995 46899999999999999999999999999999999999999999999987 599999999876
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-ccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADD 252 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~ 252 (555)
+ .||+||+..+.... . .... ..++ .. . +.+.++.+... ...
T Consensus 82 ~-~tv~enl~~~~~~~-~--~~~~---~~~~------------------------~~---~----l~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 82 P-GTIKENIIFGVSYD-E--YRYR---SVIK------------------------AC---Q----LEEDISKFAEKDNIV 123 (229)
T ss_dssp S-BCHHHHHHTTSCCC-H--HHHH---HHHH------------------------HT---T----CHHHHTTSTTGGGSC
T ss_pred C-CCHHHHhhccCCcC-h--HHHH---HHHH------------------------Hh---C----cHHHHHhCccccccc
Confidence 5 59999986532100 0 0000 0000 00 0 11122222210 112
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH-HcC--CCceEEEEecCHHHHHhhcceeEEe
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~-l~~--~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+. +.+ .+.|||+||||++++. .||+|++|
T Consensus 124 ~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 202 (229)
T 2pze_A 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 202 (229)
T ss_dssp BCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence 3456789999999999999999999999999999999999999999986 433 3789999999999986 59999999
Q ss_pred cCCeEeeccCChHHHH
Q 008750 330 EMGVSRTYEGNYSQYV 345 (555)
Q Consensus 330 ~~G~~~~~~G~y~~~~ 345 (555)
++|++. +.|++.++.
T Consensus 203 ~~G~i~-~~g~~~~~~ 217 (229)
T 2pze_A 203 HEGSSY-FYGTFSELQ 217 (229)
T ss_dssp ETTEEE-EEECHHHHH
T ss_pred ECCEEE-EECCHHHHH
Confidence 999974 567776554
No 41
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-45 Score=365.20 Aligned_cols=203 Identities=21% Similarity=0.346 Sum_probs=164.9
Q ss_pred cEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
+|+++||+|+| +++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 48999999999 56789999999999999999999999999999999999999999999998843 24899
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++. .||+||+..+... .....++.++++.
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~--------------------------------------------~~~~~~~~~~l~~ 115 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEG--------------------------------------------DYTDEDLWQVLDL 115 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTS--------------------------------------------CSCHHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhccC--------------------------------------------CCCHHHHHHHHHH
Confidence 999998754 6999998542100 0001123333444
Q ss_pred cCCCc----------cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||+||
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred hChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 44431 123456789999999999999999999999999999999999988888877643 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++. .||+|++|++|++ ...|++.++..
T Consensus 196 H~~~~~~-~~d~v~~l~~G~i-~~~g~~~~~~~ 226 (243)
T 1mv5_A 196 HRLSTIV-DADKIYFIEKGQI-TGSGKHNELVA 226 (243)
T ss_dssp CSHHHHH-HCSEEEEEETTEE-CCCSCHHHHHH
T ss_pred CChHHHH-hCCEEEEEECCEE-EEeCCHHHHHh
Confidence 9999986 5999999999987 46788776543
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.7e-45 Score=358.30 Aligned_cols=201 Identities=18% Similarity=0.345 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 97 ~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
+|+++||+++|+ ++++|+||||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++| .|+|++|++.+ +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~~-~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAWI-Q 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCCC-C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCcC-C
Confidence 589999999997 46899999999999999999999999999999999999999999999987 59999999865 6
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH---HHhhhcCCCc-
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS---KLMPELGFTA- 250 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~lgl~~- 250 (555)
..||+||+...... .. ....++. .+++.+++.+
T Consensus 79 ~~tv~enl~~~~~~-------------------~~------------------------~~~~~~~~~~~l~~~~~~~~~ 115 (237)
T 2cbz_A 79 NDSLRENILFGCQL-------------------EE------------------------PYYRSVIQACALLPDLEILPS 115 (237)
T ss_dssp SEEHHHHHHTTSCC-------------------CT------------------------THHHHHHHHTTCHHHHTTSTT
T ss_pred CcCHHHHhhCcccc-------------------CH------------------------HHHHHHHHHHhhHHHHHhccc
Confidence 88999998643100 00 0000000 1112222211
Q ss_pred ---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---C--CCceEEEEecCHHHHHhh
Q 008750 251 ---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K--QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 251 ---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~--~~~tvIiiSHd~~~l~~~ 322 (555)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+. + .+.|||+||||++++. .
T Consensus 116 ~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~ 194 (237)
T 2cbz_A 116 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-Q 194 (237)
T ss_dssp GGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-G
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-h
Confidence 12467889999999999999999999999999999999999999999999883 2 4889999999999985 7
Q ss_pred cceeEEecCCeEeeccCChHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+|++|++|++. ..|++.++..
T Consensus 195 ~d~v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 195 VDVIIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp SSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCEEEEEeCCEEE-EeCCHHHHhh
Confidence 9999999999974 5677776543
No 43
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.5e-44 Score=357.88 Aligned_cols=202 Identities=19% Similarity=0.312 Sum_probs=162.6
Q ss_pred ccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
++|+++||+|+|++ +++|+||||+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.+. .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 45999999999975 4699999999999999999999999999999999999987 89999998542 4
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|+|++|++.++ ..||++|+..+.... . ..++.++
T Consensus 95 i~~v~Q~~~l~-~~tv~enl~~~~~~~-------------------~--------------------------~~~~~~~ 128 (260)
T 2ghi_A 95 IGIVPQDTILF-NETIKYNILYGKLDA-------------------T--------------------------DEEVIKA 128 (260)
T ss_dssp EEEECSSCCCC-SEEHHHHHHTTCTTC-------------------C--------------------------HHHHHHH
T ss_pred EEEEcCCCccc-ccCHHHHHhccCCCC-------------------C--------------------------HHHHHHH
Confidence 99999999875 569999986431000 0 0011111
Q ss_pred hhhcCC-------Cc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEE
Q 008750 243 MPELGF-------TA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (555)
Q Consensus 243 l~~lgl-------~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvI 310 (555)
++.+++ +. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .+.|||
T Consensus 129 l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tvi 208 (260)
T 2ghi_A 129 TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLI 208 (260)
T ss_dssp HHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEE
T ss_pred HHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 222221 11 123567889999999999999999999999999999999999999999888753 378999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+||||++++. .||+|++|++|++. ..|++.++..
T Consensus 209 ivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 209 IIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp EECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999986 59999999999974 5677776643
No 44
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=372.56 Aligned_cols=200 Identities=21% Similarity=0.354 Sum_probs=170.2
Q ss_pred CccEEEEeEEEEe--CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 95 SSGVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
.+.|+++||+|+| ++.++|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|.+. .
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 3569999999999 56789999999999999999999999999999999999998 999999998642 5
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
||||||++.+++ +||++|+.... ....+++.++
T Consensus 96 ig~v~Q~~~lf~-~tv~enl~~~~----------------------------------------------~~~~~~v~~~ 128 (390)
T 3gd7_A 96 FGVIPQKVFIFS-GTFRKNLDPNA----------------------------------------------AHSDQEIWKV 128 (390)
T ss_dssp EEEESCCCCCCS-EEHHHHHCTTC----------------------------------------------CSCHHHHHHH
T ss_pred EEEEcCCcccCc-cCHHHHhhhcc----------------------------------------------ccCHHHHHHH
Confidence 999999998754 79999974110 0113345667
Q ss_pred hhhcCCCccccCCCCCC-----------CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceE
Q 008750 243 MPELGFTADDGDRLVAS-----------FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM 309 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~-----------LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tv 309 (555)
++.+|+. ...++++.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .+.|+
T Consensus 129 l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tv 207 (390)
T 3gd7_A 129 ADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTV 207 (390)
T ss_dssp HHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCE
T ss_pred HHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEE
Confidence 7778875 456777777 999999999999999999999999999999999999999998865 47899
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+||||++.+. .||||++|++|++. ..|+..+++
T Consensus 208 i~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~ 241 (390)
T 3gd7_A 208 ILCEARIEAML-ECDQFLVIEENKVR-QYDSILELY 241 (390)
T ss_dssp EEECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHH
T ss_pred EEEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 99999998774 69999999999974 567766554
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-42 Score=383.30 Aligned_cols=256 Identities=21% Similarity=0.295 Sum_probs=187.6
Q ss_pred HhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC--CceeeeeeeEEEECCCEE
Q 008750 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~ 126 (555)
+......+...+.+..+.+++++....+++......... .....+.|+++||+|+|+ +.++|+|+||+|++||++
T Consensus 296 l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~ 372 (587)
T 3qf4_A 296 LMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALA---LPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLV 372 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBC---CSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccc---cCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEE
Confidence 333444445667777777777665433221111000000 012345699999999995 457999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
|||||||||||||+++|+|+++|++|+|.++|.+. +|+||||++.++ +.||+||+..+..... .
T Consensus 373 ~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~-----~ 446 (587)
T 3qf4_A 373 AVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDAT-----D 446 (587)
T ss_dssp EEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCC-SEEHHHHHTTTCSSCC-----H
T ss_pred EEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCc-CccHHHHHhccCCCCC-----H
Confidence 99999999999999999999999999999999753 599999999875 6699999864321000 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
+.+.+.++ . .. +.+.+..+ |++ ...++.+.+||||||||++|||||
T Consensus 447 ~~~~~~~~------------------------~---~~----~~~~i~~l~~g~~-~~~~~~~~~LSgGqrQrv~lARal 494 (587)
T 3qf4_A 447 DEIVEAAK------------------------I---AQ----IHDFIISLPEGYD-SRVERGGRNFSGGQKQRLSIARAL 494 (587)
T ss_dssp HHHHHHHH------------------------H---TT----CHHHHHTSSSGGG-CEECSSSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------------H---hC----cHHHHHhcccchh-hHhcCCCCCcCHHHHHHHHHHHHH
Confidence 00000000 0 00 11112222 333 234667789999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+.+|++|||||||++||+.+.+.+.+.+++ .|+|+|+||||++.+. .||+|++|++|++ ...|++++....
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i-~~~g~~~el~~~ 567 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKV-AGFGTHKELLEH 567 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEE-EEEECHHHHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 999999999999999999999999988753 5899999999999996 7999999999997 567888887654
No 46
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.3e-42 Score=382.30 Aligned_cols=256 Identities=21% Similarity=0.355 Sum_probs=188.4
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCC
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGE 124 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge 124 (555)
..+......+...+.+..+.+++++....+.+... .... .......|+++||+|+|++ +++|+|+||+|++||
T Consensus 296 ~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~ 370 (582)
T 3b5x_A 296 RPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN--GKYE---AERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGK 370 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCC---CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCC
Confidence 35555566666778888888887766543322110 0000 0112356999999999974 679999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
++||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++ ..||+||+..+......
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~--- 446 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF-NDTIANNIAYAAEGEYT--- 446 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccc-cccHHHHHhccCCCCCC---
Confidence 9999999999999999999999999999999998542 599999999875 46999998643200000
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGK 272 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAr 272 (555)
.+++.+.++ .. .+ .+.++.+ |++. ..++...+||||||||++|||
T Consensus 447 -~~~~~~~~~------------------------~~---~l----~~~~~~~p~g~~t-~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 447 -REQIEQAAR------------------------QA---HA----MEFIENMPQGLDT-VIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred -HHHHHHHHH------------------------HC---CC----HHHHHhCcccccc-hhcCCCCcCCHHHHHHHHHHH
Confidence 000000000 00 01 1111221 3332 234556799999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+.+|++|||||||++||+.+++.+.+.+++ .|+|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLLA 567 (582)
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999888754 3899999999999996 69999999999974 5788877654
No 47
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-42 Score=386.65 Aligned_cols=259 Identities=22% Similarity=0.311 Sum_probs=188.5
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-CceeeeeeeEEEECCCE
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~ 125 (555)
..+......+...+.+..+++++++....+.+... +.........+.|+++||+|+|+ +.++|+|+||+|++||+
T Consensus 308 ~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~ 383 (598)
T 3qf4_B 308 RPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQK 383 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCE
Confidence 35555566666777888888887776544332111 00001112345699999999996 46799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+|||||||||||||+++|+|+++|++|+|.++|.+. +|+||+|++.++ +.||+||+..+...
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~------- 455 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-STTVKENLKYGNPG------- 455 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SSBHHHHHHSSSTT-------
T ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cccHHHHHhcCCCC-------
Confidence 999999999999999999999999999999998653 599999999874 67999998643110
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
..+. .+. . ..........+..+.+ |++. .......+||||||||++|||||+
T Consensus 456 -----------~~~~-~~~----------~---~~~~~~~~~~~~~~~~--g~~t-~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 456 -----------ATDE-EIK----------E---AAKLTHSDHFIKHLPE--GYET-VLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp -----------CCTT-HHH----------H---HTTTTTCHHHHHTSTT--GGGC-BCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred -----------CCHH-HHH----------H---HHHHhCCHHHHHhccc--cccc-hhcCCCCCCCHHHHHHHHHHHHHh
Confidence 0000 000 0 0000011111111111 2211 122334689999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
.+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+.. ||+|++|++|++ ...|++++....
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i-~~~g~~~~l~~~ 579 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEI-VEMGKHDELIQK 579 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSE-EECSCHHHHHHT
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHhC
Confidence 99999999999999999999999887754 58999999999999975 999999999997 567888877653
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.1e-42 Score=385.56 Aligned_cols=258 Identities=22% Similarity=0.375 Sum_probs=187.7
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+...+.+..+.+++++....+++........ ......+.|+++||+|+|++ .++|+|+||+|++||+
T Consensus 293 ~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~ 369 (578)
T 4a82_A 293 PLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQ---PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGET 369 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCC---CCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcc---ccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCE
Confidence 455555556677788888888777654433211100000 00123456999999999964 5799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+|||||||||||||+++|+|+++|++|+|.++|.+. .||||+|++.++ +.||+||+..+.....
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~----- 443 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPTAT----- 443 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSSCC-----
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccC-cccHHHHHhcCCCCCC-----
Confidence 999999999999999999999999999999998643 599999999875 5599999865321000
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+++.+.++ .. .....+..+.. |++ ...++...+||||||||++|||||+
T Consensus 444 ~~~~~~~~~------------------------~~---~~~~~~~~lp~--g~~-t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 444 DEEVVEAAK------------------------MA---NAHDFIMNLPQ--GYD-TEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp HHHHHHHHH------------------------HT---TCHHHHHTSTT--GGG-CBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------Hh---CcHHHHHhCcc--hhh-hhhccCCCcCCHHHHHHHHHHHHHH
Confidence 000000000 00 00111111111 222 2234556799999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++|||||||++||+.+...+.+.+++ .++|+|+||||++.+. .||+|++|++|++ ...|++++...
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i-~~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHI-VETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEE-EEEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEE-EEECCHHHHHh
Confidence 99999999999999999999999888753 5789999999999996 4999999999997 46788877654
No 49
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.9e-42 Score=381.71 Aligned_cols=257 Identities=22% Similarity=0.356 Sum_probs=186.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+...+.+..+.+++++....+.+... ..... ......|+++||+|+|++ +++|+|+||+|++||+
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~---~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~ 371 (582)
T 3b60_A 297 PLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE--GKRVI---DRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKT 371 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC--CCBCC---SCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC--CCCCC---CCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCE
Confidence 5555555666677777777777655432221110 00000 112356999999999973 6799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .||+||+..+......
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---- 446 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTEEYS---- 446 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTSCCC----
T ss_pred EEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCCCCCC----
Confidence 999999999999999999999999999999998542 5999999998854 6999998643200000
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+++.+.+ +.. .+...++.+.+ |++ ...++...+||||||||++|||||+
T Consensus 447 ~~~~~~~l------------------------~~~---~l~~~~~~~p~--g~~-~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 447 REQIEEAA------------------------RMA---YAMDFINKMDN--GLD-TIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HHHHHHHH------------------------HTT---TCHHHHHHSTT--GGG-SBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------------HHc---CCHHHHHhccc--ccc-ccccCCCCCCCHHHHHHHHHHHHHH
Confidence 00000000 000 11111111111 332 2334567899999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++|||||||++||+.+++.+.+.+++ .|+|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHHH
Confidence 99999999999999999999999888754 4899999999999986 69999999999974 5688777654
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.4e-42 Score=380.87 Aligned_cols=251 Identities=19% Similarity=0.260 Sum_probs=183.4
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCcc-EEEEeEEEEeCC---ceeeeeeeEEEECC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSG-VKLENISKSYKG---VTVLKDVTWEVKKG 123 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~l~nls~~y~~---~~vL~~vsl~i~~G 123 (555)
.+......+...+.+..+.+++++....+.+........ ........ |+++||+|+|++ .++|+|+||+|++|
T Consensus 294 pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G 370 (595)
T 2yl4_A 294 SIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVI---LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSG 370 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBC---CCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCC---CCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCC
Confidence 455555555667777777777766543322111000000 00112345 999999999974 46999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHH
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~ 193 (555)
|++||+||||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.++ ..||+||+..+....
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~---- 445 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDP---- 445 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCC-SSBHHHHHHTTSSST----
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCccc-CCCHHHHHhhcCCCc----
Confidence 99999999999999999999999999999999998542 599999999885 469999996532100
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC----------ccccCCCCCCCChH
Q 008750 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT----------ADDGDRLVASFSSG 263 (555)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~----------~~~~~~~~~~LSGG 263 (555)
. ...++++.++++.+|+. ....++...+||||
T Consensus 446 -----------~---------------------------~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgG 487 (595)
T 2yl4_A 446 -----------S---------------------------SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487 (595)
T ss_dssp -----------T---------------------------TSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHH
T ss_pred -----------c---------------------------ccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHH
Confidence 0 00011122222222221 01223445899999
Q ss_pred HHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCCh
Q 008750 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 264 qrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y 341 (555)
|||||+|||||+.+|++|||||||++||+.+++.+.+.+++ .++|+|+||||++.+. .||+|++|++|++. ..|++
T Consensus 488 q~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~ 565 (595)
T 2yl4_A 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKIT-EYGKH 565 (595)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCH
Confidence 99999999999999999999999999999999999988754 4899999999999996 59999999999974 46777
Q ss_pred HHHHH
Q 008750 342 SQYVL 346 (555)
Q Consensus 342 ~~~~~ 346 (555)
++...
T Consensus 566 ~~l~~ 570 (595)
T 2yl4_A 566 EELLS 570 (595)
T ss_dssp CC---
T ss_pred HHHHh
Confidence 66543
No 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.1e-41 Score=345.10 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=147.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+.|+++||+|.+ +++|+||||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++| .|+|++|++.+++
T Consensus 38 ~~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNSWIMP 112 (290)
T ss_dssp ------------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSCCCCS
T ss_pred CceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCCccCc
Confidence 3469999999863 5799999999999999999999999999999999999999999999987 5999999988765
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-cccc
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDG 253 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~ 253 (555)
.||+||+. ..... . .... ..++ .. .+ .+.+..+... ....
T Consensus 113 -~tv~enl~-~~~~~-~--~~~~---~~~~------------------------~~---~l----~~~l~~~~~~~~~~~ 153 (290)
T 2bbs_A 113 -GTIKENII-GVSYD-E--YRYR---SVIK------------------------AC---QL----EEDISKFAEKDNIVL 153 (290)
T ss_dssp -SBHHHHHH-TTCCC-H--HHHH---HHHH------------------------HT---TC----HHHHHTSTTGGGCBC
T ss_pred -ccHHHHhh-Ccccc-h--HHHH---HHHH------------------------Hh---Ch----HHHHHhccccccchh
Confidence 59999986 32100 0 0000 0000 00 00 1112222110 0123
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH-cC--CCceEEEEecCHHHHHhhcceeEEec
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-GK--QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l-~~--~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+ .+ .+.|||+||||++++. .||+|++|+
T Consensus 154 ~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~ 232 (290)
T 2bbs_A 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILH 232 (290)
T ss_dssp ----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEE
T ss_pred cCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEE
Confidence 4557899999999999999999999999999999999999999999864 33 4889999999999986 599999999
Q ss_pred CCeEeeccCChHHHH
Q 008750 331 MGVSRTYEGNYSQYV 345 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~ 345 (555)
+|++. +.|++.++.
T Consensus 233 ~G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 233 EGSSY-FYGTFSELQ 246 (290)
T ss_dssp TTEEE-EEECHHHHH
T ss_pred CCeEE-EeCCHHHHh
Confidence 99974 567776654
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-40 Score=396.71 Aligned_cols=252 Identities=22% Similarity=0.340 Sum_probs=184.0
Q ss_pred HHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCC
Q 008750 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVN 132 (555)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~N 132 (555)
+..+..+..+.+++++....+++.......+ ...+..+.|+++||+|+|++ .++|+||||+|++||++||||+|
T Consensus 1038 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~---~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~S 1114 (1321)
T 4f4c_A 1038 FPEYAKATFAGGIIFGMLRKISKIDSLSLAG---EKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPS 1114 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSCTTCCCS---BCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECST
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCCCccCCC---CCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCC
Confidence 3455666666666665533222111111111 11133456999999999964 36999999999999999999999
Q ss_pred CccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHH-HHHHHHHHHHHHH
Q 008750 133 GAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQK 201 (555)
Q Consensus 133 GsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~-~~~~~~~~~~~~~ 201 (555)
|||||||+++|.|+++|++|+|.+||.++ +|+||||+|.+ |+.||++|+..+..+ ... .+++.+
T Consensus 1115 GsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L-F~gTIreNI~~gld~~~~s----d~ei~~ 1189 (1321)
T 4f4c_A 1115 GCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL-FDCSIAENIIYGLDPSSVT----MAQVEE 1189 (1321)
T ss_dssp TSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC-CSEEHHHHHSSSSCTTTSC----HHHHHH
T ss_pred CChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe-eCccHHHHHhccCCCCCCC----HHHHHH
Confidence 99999999999999999999999999753 59999999988 788999998643210 000 000111
Q ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEE
Q 008750 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (555)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lL 281 (555)
+++ .. .+...+..+-+ |++....+ .-.+||||||||++|||||+++|+||
T Consensus 1190 Al~------------------------~a---~l~~~I~~Lp~--GldT~vge-~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1190 AAR------------------------LA---NIHNFIAELPE--GFETRVGD-RGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp HHH------------------------HT---TCHHHHHTSTT--TTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred HHH------------------------Hh---CChHHHHcCcC--CCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 111 00 11112222211 44433322 23589999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 282 lLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||||||+||+++.+.+.+.|++ .++|+|+|+|+++.+. .||+|+||++|+++. .|++.+.++.
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~IvE-~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM-NADCIAVVSNGTIIE-KGTHTQLMSE 1305 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT-TCSEEEEESSSSEEE-EECHHHHHHC
T ss_pred EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999976 4899999999999996 499999999999854 5888887754
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.6e-39 Score=354.63 Aligned_cols=202 Identities=27% Similarity=0.376 Sum_probs=170.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+.++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+ ...|+|++|++...+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecCCcCCC
Confidence 4579999999999774 799999999999999999999999999999999999999999987 347999999987778
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+++...... .. .....+.++++.+|+. ...+
T Consensus 361 ~~tv~~~~~~~~~~----------------------------------------~~---~~~~~~~~~l~~~~l~-~~~~ 396 (538)
T 1yqt_A 361 EGTVYELLSKIDAS----------------------------------------KL---NSNFYKTELLKPLGII-DLYD 396 (538)
T ss_dssp SSBHHHHHHHHHHH----------------------------------------HH---TCHHHHHHTTTTTTCG-GGTT
T ss_pred CCcHHHHHHhhhcc----------------------------------------CC---CHHHHHHHHHHHcCCh-hhhc
Confidence 88997765321000 00 0124567789999996 5779
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999998
Q ss_pred C--CeEeeccCChHHHH
Q 008750 331 M--GVSRTYEGNYSQYV 345 (555)
Q Consensus 331 ~--G~~~~~~G~y~~~~ 345 (555)
+ |.+ ...|+..+..
T Consensus 477 ~~~~~~-~~~g~~~~~~ 492 (538)
T 1yqt_A 477 GEPGKY-GRALPPMGMR 492 (538)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-eecCCHHHHH
Confidence 5 443 3457665543
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.5e-39 Score=351.39 Aligned_cols=192 Identities=25% Similarity=0.328 Sum_probs=165.0
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+.++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++. .++|++|+....+
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ--ILSYKPQRIFPNY 343 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC--CEEEECSSCCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe--eeEeechhccccc
Confidence 4578999999999874 688889999999999999999999999999999999999999998754 6899999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+|+..... . ........+.++++.+|+. ...+
T Consensus 344 ~~tv~~~l~~~~~-----------------~-------------------------~~~~~~~~~~~~l~~~~l~-~~~~ 380 (538)
T 3ozx_A 344 DGTVQQYLENASK-----------------D-------------------------ALSTSSWFFEEVTKRLNLH-RLLE 380 (538)
T ss_dssp SSBHHHHHHHHCS-----------------S-------------------------TTCTTSHHHHHTTTTTTGG-GCTT
T ss_pred CCCHHHHHHHhhh-----------------h-------------------------ccchhHHHHHHHHHHcCCH-HHhc
Confidence 8899998743100 0 0001123467788999996 5679
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|.|||+||||++++..+||||++|+
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999998888774 358999999999999999999999998
Q ss_pred CC
Q 008750 331 MG 332 (555)
Q Consensus 331 ~G 332 (555)
++
T Consensus 461 ~~ 462 (538)
T 3ozx_A 461 GE 462 (538)
T ss_dssp EE
T ss_pred CC
Confidence 63
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.3e-39 Score=355.97 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=170.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
..+++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+. ..|+|+||++...+
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCccCCC
Confidence 4579999999999764 7999999999999999999999999999999999999999999873 47999999987778
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+++....... .....++.++++.+|+. ...+
T Consensus 431 ~~tv~e~~~~~~~~~-------------------------------------------~~~~~~~~~~l~~~~l~-~~~~ 466 (607)
T 3bk7_A 431 EGTVYELLSKIDSSK-------------------------------------------LNSNFYKTELLKPLGII-DLYD 466 (607)
T ss_dssp SSBHHHHHHHHHHHH-------------------------------------------HHCHHHHHHTHHHHTCT-TTTT
T ss_pred CCcHHHHHHhhhccC-------------------------------------------CCHHHHHHHHHHHcCCc-hHhc
Confidence 889987764210000 00123467788899996 5779
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 99999999999999999999999999999999999999999998888753 58999999999999999999999998
Q ss_pred C--CeEeeccCChHHHH
Q 008750 331 M--GVSRTYEGNYSQYV 345 (555)
Q Consensus 331 ~--G~~~~~~G~y~~~~ 345 (555)
+ |.+ ...|...+..
T Consensus 547 ~~~g~~-~~~g~p~~~~ 562 (607)
T 3bk7_A 547 GEPGRH-GRALPPMGMR 562 (607)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-EecCCHHHHH
Confidence 5 443 3456665543
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.3e-39 Score=367.11 Aligned_cols=245 Identities=23% Similarity=0.380 Sum_probs=176.1
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
.++|+++||+|+|++ +++|+||||+|.+|+++||+|+||||||||+|+|+|+++|++|+|.+++ +..|+|++|++..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~-~~~I~yv~Q~~~~ 747 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE-NCRIAYIKQHAFA 747 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT-TCCEEEECHHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC-ccceEeeccchhh
Confidence 467999999999975 5799999999999999999999999999999999999999999999986 3579999998632
Q ss_pred ----CcCccHHHHHHHhhHHHHHHHHHHHHHHHHH---------------------------------------------
Q 008750 173 ----SMSRTVREEFMSAFKEEMEIAGKLERVQKAL--------------------------------------------- 203 (555)
Q Consensus 173 ----~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 203 (555)
....|+.+++...+....+.. ........+
T Consensus 748 ~l~~~~~~t~~e~i~~~~q~g~d~~-~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 748 HIESHLDKTPSEYIQWRFQTGEDRE-TMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HGGGCTTSCHHHHHHHHTTTSSCTT-TTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhcccccCHHHHHHHHhhccchhh-hhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 234688887653221000000 000000000
Q ss_pred --------------hhccccHH-H---HHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc-cCCCCCCCChHH
Q 008750 204 --------------ESAVDDMD-L---MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-GDRLVASFSSGW 264 (555)
Q Consensus 204 --------------~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGq 264 (555)
++...+.. . ...+..+++................++.++|+.+||.... .++++.+|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 00000000 0 0000001110000001111223356789999999997544 578899999999
Q ss_pred HHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCCh
Q 008750 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 265 rqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y 341 (555)
||||+|||||+.+|+||||||||++||+.+...+.+.|++.+.|||+||||++++..+||+|++|++|++.....+|
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~~ 983 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNW 983 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC-----
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCcc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999875433333
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.5e-39 Score=384.53 Aligned_cols=215 Identities=23% Similarity=0.394 Sum_probs=166.4
Q ss_pred CccEEEEeEEEEeCCc---eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 95 SSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
.+.|+++||+|+|++. ++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 4569999999999753 699999999999999999999999999999999999999999999998653
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
+|+||||++.+ +..||+||+..+.... ..+.+.+.. ... ...+.+
T Consensus 1108 ~i~~v~Q~~~l-~~~ti~eNi~~~~~~~-----------------~~~~~~i~~----------~~~-------~~~~~~ 1152 (1284)
T 3g5u_A 1108 QLGIVSQEPIL-FDCSIAENIAYGDNSR-----------------VVSYEEIVR----------AAK-------EANIHQ 1152 (1284)
T ss_dssp SCEEEESSCCC-CSSBHHHHHTCCCSSC-----------------CCCHHHHHH----------HHH-------HHTCHH
T ss_pred ceEEECCCCcc-ccccHHHHHhccCCCC-----------------CCCHHHHHH----------HHH-------HhCcHH
Confidence 59999999976 6789999986431100 000000000 000 000111
Q ss_pred Hhhhc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHH
Q 008750 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~ 317 (555)
.+..+ |++. .......+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|++ .|+|+|+||||++
T Consensus 1153 ~i~~l~~gldt-~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1153 FIDSLPDKYNT-RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHSSTTTGGGC-BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTT
T ss_pred HHHhCcccccc-ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHH
Confidence 12221 2221 12334568999999999999999999999999999999999999999988853 5899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
++. .||||++|++|++. ..|+++++...
T Consensus 1232 ~i~-~~dri~vl~~G~i~-~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1232 TIQ-NADLIVVIQNGKVK-EHGTHQQLLAQ 1259 (1284)
T ss_dssp GGG-SCSEEEEEETBEEE-EEECHHHHHHS
T ss_pred HHH-cCCEEEEEECCEEE-EECCHHHHHhC
Confidence 995 59999999999974 56888877654
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-37 Score=337.26 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=164.1
Q ss_pred EeEEEEeCC-ceeeeeeeEEEECC-----CEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 101 ENISKSYKG-VTVLKDVTWEVKKG-----EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 101 ~nls~~y~~-~~vL~~vsl~i~~G-----e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+++++|++ ..+++++||++.+| |++||+|+||||||||+++|+|+++|++|+.. ....++|++|+....+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~---~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---CSCCEEEECSSCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---cCCcEEEecccccccC
Confidence 678889976 46899999999999 88999999999999999999999999999842 2357999999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+++..... ........+.++++.+|+. ...+
T Consensus 427 ~~tv~e~~~~~~~-------------------------------------------~~~~~~~~~~~~l~~l~l~-~~~~ 462 (608)
T 3j16_B 427 PGTVRQLFFKKIR-------------------------------------------GQFLNPQFQTDVVKPLRID-DIID 462 (608)
T ss_dssp CSBHHHHHHHHCS-------------------------------------------STTTSHHHHHHTHHHHTST-TTSS
T ss_pred CccHHHHHHHHhh-------------------------------------------cccccHHHHHHHHHHcCCh-hhhc
Confidence 7899887642110 0001123456678888986 5679
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999888877643 58999999999999999999999998
Q ss_pred C--CeEeeccCChHHHHH
Q 008750 331 M--GVSRTYEGNYSQYVL 346 (555)
Q Consensus 331 ~--G~~~~~~G~y~~~~~ 346 (555)
+ |++ .+.|...+...
T Consensus 543 ~~~g~~-~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKN-AHARAPESLLT 559 (608)
T ss_dssp EETTTE-EECCCCEEHHH
T ss_pred CCCCeE-EecCChHHHhh
Confidence 6 654 56677666554
No 59
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=4.8e-36 Score=340.47 Aligned_cols=181 Identities=19% Similarity=0.243 Sum_probs=139.6
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHH---cCCCce
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l---~~~~~t 308 (555)
++..++. .|..+||.....++++.+|||||+|||+||++|+.+|+ +|||||||++||+...++|.+.| ++.|.|
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~T 433 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence 4566666 68899997555799999999999999999999999995 99999999999999999988865 567999
Q ss_pred EEEEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 008750 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (555)
||+||||++++. .||+|++| ++|+ +++.|+|+++....+... ...+. .
T Consensus 434 VIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~-iv~~g~~~~~~~~~~~~~-----------------~~~l~---~---- 487 (842)
T 2vf7_A 434 LFVVEHDLDVIR-RADWLVDVGPEAGEKGGE-ILYSGPPEGLKHVPESQT-----------------GQYLF---A---- 487 (842)
T ss_dssp EEEECCCHHHHT-TCSEEEEECSSSGGGCCS-EEEEECGGGGGGCTTCHH-----------------HHHHH---T----
T ss_pred EEEEcCCHHHHH-hCCEEEEeCCCcccCCCE-EEEecCHHHHHhchHHHH-----------------HHHhh---h----
Confidence 999999999885 79999999 4565 478899988754211000 00000 0
Q ss_pred hhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCc
Q 008750 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCG 462 (555)
Q Consensus 383 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsG 462 (555)
. ...+ . .....++.+|+++++++ ..|+++||+|++||+++|+|+||||
T Consensus 488 ----------------~-~~~~--~--------~~~~~~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSG 535 (842)
T 2vf7_A 488 ----------------D-RHTE--P--------HTPREPAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSG 535 (842)
T ss_dssp ----------------C-CCCC--C--------CCCCCCSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSS
T ss_pred ----------------c-cccc--c--------cccCCCCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcC
Confidence 0 0000 0 00113456899999986 2699999999999999999999999
Q ss_pred HHHHHHH-HhCC
Q 008750 463 KSTLLKL-IMGL 473 (555)
Q Consensus 463 KSTLlk~-L~G~ 473 (555)
||||+++ |+|.
T Consensus 536 KSTLl~~~L~g~ 547 (842)
T 2vf7_A 536 KSTLVSQALVDA 547 (842)
T ss_dssp HHHHCCCCCHHH
T ss_pred HHHHHHHHHHHH
Confidence 9999996 6644
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.7e-35 Score=333.65 Aligned_cols=173 Identities=19% Similarity=0.306 Sum_probs=130.0
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
..+.|..+||.....++++.+|||||+|||+|||||+.+|+ +|||||||++||+...++|.+.|+ +.|.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34578889997555789999999999999999999999887 999999999999999999988875 4589999999
Q ss_pred cCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHH
Q 008750 314 HDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (555)
||++++.. ||+|++| ++|++ ++.|+++++........ .....
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~~~----------------~~~~l-------------- 571 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDSSL----------------TGEYL-------------- 571 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTTCH----------------HHHHH--------------
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchhcc----------------hhhhh--------------
Confidence 99999975 9999999 67765 68899887653210000 00000
Q ss_pred HHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHH
Q 008750 388 AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL 467 (555)
Q Consensus 388 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLl 467 (555)
.. ... +..+...+.....+++++++ ...|+++||+|+.|++++|+|+||||||||+
T Consensus 572 --------~~----~~~-------~~~~~~~~~~~~~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 572 --------SG----KRK-------ITVNKTRRLPYASLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp --------HS----SSC-------CCCCSSCCCCSSEEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred --------hc----ccc-------cccccccccccceEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 00 000 00011111123346676664 2469999999999999999999999999997
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=6.7e-36 Score=339.56 Aligned_cols=180 Identities=18% Similarity=0.262 Sum_probs=136.6
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCce
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~t 308 (555)
++..++ +.|..+||....+++++.+|||||+|||+||++|..+| ++|||||||++||+...++|.+.|+ +.|.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 345555 45899999755579999999999999999999999985 9999999999999999999988764 57999
Q ss_pred EEEEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 008750 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (555)
||+|+||++++. .||+|++| ++|+ +++.|+++++....+. ..
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~-iv~~G~~~e~~~~~~s------------------------------lt 606 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGE-VVAAGTPEEVMNDPNS------------------------------LT 606 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCS-EEEEECTTTTTTCTTC------------------------------TT
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCE-EEEecCHHHHHhhhHH------------------------------HH
Confidence 999999999986 69999999 4565 4788998876531100 00
Q ss_pred hhHHHHHHHHHHHHHhhhhcCccccccceeeccCCC-CCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCC
Q 008750 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (555)
Q Consensus 383 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGs 461 (555)
++ . +... ...+ .+... ...+++|++++++. ..|+++||+|+.||+++|+|+|||
T Consensus 607 ~~------~---l~g~--~~~~---------~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGS 661 (972)
T 2r6f_A 607 GQ------Y---LSGK--KFIP---------IPAERRRPDGRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGS 661 (972)
T ss_dssp HH------H---HHTS--SCCC---------CCSSCCCCCSCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTS
T ss_pred HH------H---hcCC--cccc---------CccccccccceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCC
Confidence 00 0 0000 0000 01111 12246899999873 369999999999999999999999
Q ss_pred cHHHHHHHHh
Q 008750 462 GKSTLLKLIM 471 (555)
Q Consensus 462 GKSTLlk~L~ 471 (555)
|||||+++|+
T Consensus 662 GKSTLl~~ll 671 (972)
T 2r6f_A 662 GKSTLVNEVL 671 (972)
T ss_dssp SHHHHHTTTH
T ss_pred CHHHHHHHHH
Confidence 9999999854
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.4e-35 Score=338.06 Aligned_cols=181 Identities=23% Similarity=0.307 Sum_probs=136.0
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD--PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~--p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tv 309 (555)
+..++ +.|..+||....+++++.+|||||+|||+||++|..+ |++|||||||++||+...++|.+.|+ +.|.||
T Consensus 498 i~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV 576 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTL 576 (993)
T ss_dssp HHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 44555 4588899964457999999999999999999999999 58999999999999999999988764 579999
Q ss_pred EEEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Q 008750 310 VIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (555)
|+||||++++. .||+|++| ++|+ +++.|+++++....+.. ....+. .
T Consensus 577 IvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~-iv~~G~~~e~~~~~~~l-----------------t~~~l~---g----- 629 (993)
T 2ygr_A 577 IVVEHDEDTIE-HADWIVDIGPGAGEHGGR-IVHSGPYDELLRNKDSI-----------------TGAYLS---G----- 629 (993)
T ss_dssp EEECCCHHHHH-TCSEEEEECSSSGGGCCS-CCEEECHHHHHHCTTCH-----------------HHHHHH---T-----
T ss_pred EEECCCHHHHH-hCCEEEEecCccccCCCE-EEEeeCHHHhhhhhHHH-----------------HHHHhc---c-----
Confidence 99999999986 79999999 4555 57899998876421100 000000 0
Q ss_pred hHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcH
Q 008750 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463 (555)
Q Consensus 384 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGK 463 (555)
......+.. ........+|++++++. ..|+++||+|+.||+++|+|+|||||
T Consensus 630 --------------~~~~~~~~~---------~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGK 681 (993)
T 2ygr_A 630 --------------RESIEIPAI---------RRSVDPRRQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGK 681 (993)
T ss_dssp --------------SSCCCCCSS---------CCCCCSSSEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSH
T ss_pred --------------CccccCccc---------cccCCCCceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCH
Confidence 000000000 00001136899999863 36999999999999999999999999
Q ss_pred HHHHHHHh
Q 008750 464 STLLKLIM 471 (555)
Q Consensus 464 STLlk~L~ 471 (555)
|||+++|+
T Consensus 682 STLl~~il 689 (993)
T 2ygr_A 682 STLVNDIL 689 (993)
T ss_dssp HHHHTTTH
T ss_pred HHHHHHHH
Confidence 99999853
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=4.1e-32 Score=306.00 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=91.9
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC---EEEEcCCCCCCCHHHHHHHHHHHc---CCCceEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~---lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvI 310 (555)
.++.+.+..+|+.....++++.+|||||||||+|||||+.+|+ ||||||||++||+.+...+.++|+ +.|.|||
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3456678889987556789999999999999999999999875 999999999999999998888764 3589999
Q ss_pred EEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~ 345 (555)
+||||++++. .||||++| ++|++ ++.|+..+..
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i-~~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQI-VAVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEE-EEEECHHHHH
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEE-EEecCHHHHH
Confidence 9999999984 69999999 78986 5678777654
No 64
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.97 E-value=1.3e-34 Score=317.56 Aligned_cols=323 Identities=12% Similarity=0.076 Sum_probs=188.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeE-EEECCCEEEEEcCCCccHHHHHHH--HHcCCCCCceEEEEcCCCc---------eEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRI--IAGQEEPDSGNVIKAKSNM---------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLlk~--i~G~~~p~~G~I~~~g~~~---------~ig 164 (555)
.++.+++.+.+++.++|++||| .|++|++++|+|+||||||||+++ ++|+++|++|.|+++|.+. .+|
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 3555666655567889999999 999999999999999999999999 7899999999999987541 233
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++....+ +. .+.... .....++++
T Consensus 92 ~~~q~~~~~~~------l~---------------------------------------------~~~~~~-~~~~~~~l~ 119 (525)
T 1tf7_A 92 WDLAKLVDEGK------LF---------------------------------------------ILDASP-DPEGQEVVG 119 (525)
T ss_dssp CCHHHHHHTTS------EE---------------------------------------------EEECCC-CSSCCSCCS
T ss_pred CChHHhhccCc------EE---------------------------------------------EEecCc-ccchhhhhc
Confidence 44433221000 00 000000 000011222
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCC-----CCHHHHHHHHHHH---cCCCceEEEEecCH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-----LDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~-----LD~~~~~~l~~~l---~~~~~tvIiiSHd~ 316 (555)
.+++. ...++.+..|||| +|++++|||||+. ||+..++.+.+++ ++.|.|||+||||+
T Consensus 120 ~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 120 GFDLS-ALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp SHHHH-HHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred ccCHH-HHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 23322 1233444455555 5889999999985 5888888877765 34699999999999
Q ss_pred HH---------HHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHH
Q 008750 317 AF---------LDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (555)
Q Consensus 317 ~~---------l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (555)
++ +..+||+|++|++|.. .|....++. +.++. +....
T Consensus 186 ~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~--------------------------~~k~r-~~~~~---- 231 (525)
T 1tf7_A 186 EEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLE--------------------------ILKLR-GTSHM---- 231 (525)
T ss_dssp SSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEE--------------------------EEEET-TSCCC----
T ss_pred CCccccccccceeeeeeEEEEEEEEcc---CCceeEEEE--------------------------EEECC-CCCCC----
Confidence 88 4667999999998532 122110000 00000 00000
Q ss_pred HHHHHHHHHHhhhhcCccccccceee-ccCCCCCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHH
Q 008750 388 AEKKLERLQEEEQIEKPFQRKQMKIR-FPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKST 465 (555)
Q Consensus 388 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKST 465 (555)
....++......+. ++......++.++++++++.|++ ..+| +..|.+|++++|+|+|||||||
T Consensus 232 ------------~~~~~~~i~~~gi~v~p~~~~~~~~~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKST 296 (525)
T 1tf7_A 232 ------------KGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTL 296 (525)
T ss_dssp ------------CSEEEEEEETTEEEECCTTTCCSCCCCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHH
T ss_pred ------------CceEEEEEcCCCEEEEeccccccccccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHH
Confidence 00000000000000 11111123345678888876643 1233 4589999999999999999999
Q ss_pred HHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCC
Q 008750 466 LLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545 (555)
Q Consensus 466 Llk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LS 545 (555)
|++.|+|...|. |. .+ ..|.+|++.. .+..+.... .+...+ +..+++. ...++++..||
T Consensus 297 Ll~~l~g~~~~~-G~------~v-i~~~~ee~~~------~l~~~~~~~--g~~~~~----~~~~g~~-~~~~~~p~~LS 355 (525)
T 1tf7_A 297 LVSRFVENACAN-KE------RA-ILFAYEESRA------QLLRNAYSW--GMDFEE----MERQNLL-KIVCAYPESAG 355 (525)
T ss_dssp HHHHHHHHHHTT-TC------CE-EEEESSSCHH------HHHHHHHTT--SCCHHH----HHHTTSE-EECCCCGGGSC
T ss_pred HHHHHHHHHHhC-CC------CE-EEEEEeCCHH------HHHHHHHHc--CCCHHH----HHhCCCE-EEEEeccccCC
Confidence 999999998875 42 11 2234554311 223332211 222222 2233332 34567889999
Q ss_pred hhHHhchhcC
Q 008750 546 GGEKVNQTLV 555 (555)
Q Consensus 546 GGek~Rv~La 555 (555)
|||+||+++|
T Consensus 356 ~g~~q~~~~a 365 (525)
T 1tf7_A 356 LEDHLQIIKS 365 (525)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=8.4e-31 Score=297.54 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=94.1
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccC---CCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~---p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvI 310 (555)
.++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+..++.|.++|+ +.|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999975556899999999999999999999996 79999999999999999999888764 4699999
Q ss_pred EEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~ 345 (555)
+||||++++ .+||+|++| ++|++ ++.|++.++.
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~I-v~~g~~~el~ 826 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRL-VAQGTPAEVA 826 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSE-EEEECHHHHT
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEE-EEEcCHHHHH
Confidence 999999999 789999999 57776 5678877654
No 66
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.6e-34 Score=305.97 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=157.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce-E-EEEcCC-CceEEEEecccc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-N-VIKAKS-NMKIAFLSQEFE 171 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~-I~~~g~-~~~ig~v~Q~~~ 171 (555)
.++++++||+|.|+ ++||+|++|++++|+|+||||||||+|+|+|++.|++| + |.+++. ...++|+||++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 46789999999985 79999999999999999999999999999999999999 9 999873 235899999985
Q ss_pred cC---cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 172 VS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 172 ~~---~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++ ...|+.+|+ .... . ........++..++..+|+
T Consensus 190 l~~~~~~~tv~eni-~~~~-----------------~------------------------~~~~~~~~~~~~ll~~~gl 227 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQS-----------------L------------------------TSGATLLHNKQPMVKNFGL 227 (460)
T ss_dssp EEECCSCCCTTCTT-CSCB-----------------C------------------------BSSCCSSCCBCCEECCCCS
T ss_pred hcccccccchhhhh-cccc-----------------c------------------------ccCcchHHHHHHHHHHhCC
Confidence 42 345777665 2110 0 0000011234557888898
Q ss_pred CccccCCCCCCCChHHHHHHHHHHH--hccCCCE----EEEcC-CCCCCCHHHHHHHHHHHcCCCceEEEEecCHH----
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKI--LLQDPDL----LLLDE-PTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---- 317 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAra--L~~~p~l----LlLDE-PTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~---- 317 (555)
... .+ +.+|||||||||+|||| |+.+|++ ||||| ||++||+. .+.|.+++++.+.|+|+|+||..
T Consensus 228 ~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~ 303 (460)
T 2npi_A 228 ERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLW 303 (460)
T ss_dssp SSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHH
T ss_pred Ccc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhh
Confidence 643 33 77999999999999999 9999999 99999 99999999 88888888888999999999987
Q ss_pred --HHHhhcce-----eEEec-CCeEeeccCChHH
Q 008750 318 --FLDQLCTK-----IVETE-MGVSRTYEGNYSQ 343 (555)
Q Consensus 318 --~l~~~~dr-----i~~l~-~G~~~~~~G~y~~ 343 (555)
++..+||+ |++|+ +|+++ .|+..+
T Consensus 304 ~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~ 335 (460)
T 2npi_A 304 EKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVY 335 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred HHHHHHhcccccCCEEEEEeCCCcEE--ECCHHH
Confidence 88899999 99999 99875 676543
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=1.2e-29 Score=269.89 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=143.5
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCce
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--------------------------------------PDSG 152 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--------------------------------------p~~G 152 (555)
.+|++++|+|.+| +++|+|+||||||||+++|+++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5899999999999 999999999999999999977764 4478
Q ss_pred EEEEcCCCc-----------eEEEEecccccCcCc-cHHHHHHHhhHH-----HHHHHHHHHHHHHHHhhcccc------
Q 008750 153 NVIKAKSNM-----------KIAFLSQEFEVSMSR-TVREEFMSAFKE-----EMEIAGKLERVQKALESAVDD------ 209 (555)
Q Consensus 153 ~I~~~g~~~-----------~ig~v~Q~~~~~~~~-tv~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------ 209 (555)
++.++|.+. .+++++|+..+.... ..+-.++..+.. ..........+..........
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 899988643 289999987654321 111122221110 000011111111111000000
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc----------------------C-----
Q 008750 210 --------MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG----------------------D----- 254 (555)
Q Consensus 210 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~----------------------~----- 254 (555)
.+.....+.+...............+...+.+.+..++++.... .
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 00000000000000000001112334556777788777653110 0
Q ss_pred --CCCCC-CChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeE
Q 008750 255 --RLVAS-FSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 255 --~~~~~-LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
+++.. |||||||||+||++|+.+| ++|||||||++||+.++.+|.++|++ .|.|||+||||++++ .+||+++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~ 366 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHY 366 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEE
Confidence 33333 6999999999999999999 99999999999999999999999875 379999999999887 5799999
Q ss_pred Ee----cCCeEee
Q 008750 328 ET----EMGVSRT 336 (555)
Q Consensus 328 ~l----~~G~~~~ 336 (555)
+| ++|++..
T Consensus 367 ~l~k~~~~G~~~~ 379 (415)
T 4aby_A 367 KVEKQVEDGRTVS 379 (415)
T ss_dssp EEEEEEETTEEEE
T ss_pred EEEEeccCCceEE
Confidence 99 8888644
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=2.1e-29 Score=286.43 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=92.7
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC---CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEE
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p---~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIi 311 (555)
++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+ +.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999754678999999999999999999999875 9999999999999999999888774 46899999
Q ss_pred EecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHH
Q 008750 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~ 346 (555)
||||++++ ..||+|++| ++|++ ++.|+..++..
T Consensus 904 isHdl~~i-~~aDrIivL~p~gG~~~G~I-v~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVI-KTADYIIDLGPEGGDRGGQI-VAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSTTSCCSE-EEEESHHHHHT
T ss_pred EcCCHHHH-HhCCEEEEEcCCCCCCCCEE-EEecCHHHHHh
Confidence 99999998 579999999 57776 56788776653
No 69
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=3.7e-29 Score=286.32 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=93.8
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC---CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p---~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvI 310 (555)
.++.++|..+||.....++++.+|||||||||+|||+|+.+| +||||||||+|||+..++.|.+.|+ +.|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 466788999999765678899999999999999999999876 6999999999999999999988775 4699999
Q ss_pred EEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHH
Q 008750 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~ 346 (555)
+||||++++.. ||+|++| ++|++ ++.|+..+...
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~I-v~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYI-VATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEE-EEEESHHHHHS
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEE-EEEcCHHHHHh
Confidence 99999999964 9999999 77876 57788776543
No 70
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.8e-29 Score=287.99 Aligned_cols=107 Identities=19% Similarity=0.297 Sum_probs=92.6
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC---CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEE
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p---~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIi 311 (555)
++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+..+..|.++|+ +.|.|||+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999654678999999999999999999999875 9999999999999999999988774 46999999
Q ss_pred EecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHH
Q 008750 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~ 346 (555)
||||++++ ..||+|++| ++|++ ++.|++.++..
T Consensus 922 isHdl~~i-~~aDrIivL~p~gg~~~G~I-v~~G~~~el~~ 960 (993)
T 2ygr_A 922 IEHNLDVI-KTSDWIIDLGPEGGAGGGTV-VAQGTPEDVAA 960 (993)
T ss_dssp ECCCHHHH-TTCSEEEEEESSSTTSCSEE-EEEECHHHHHH
T ss_pred EcCCHHHH-HhCCEEEEECCCcCCCCCEE-EEecCHHHHHh
Confidence 99999998 579999999 57776 56788776643
No 71
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=2.5e-27 Score=247.99 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCCCCCCChHHHHHHHHHHHhc------cCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 254 DRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~------~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
++++.+|||||||||+||+||+ .+|++|||||||++||+....++.++|++ .|.|||+||||++++ ..||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence 5788999999999999999999 79999999999999999999999888753 589999999999985 6799
Q ss_pred eeEEecCCeEe
Q 008750 325 KIVETEMGVSR 335 (555)
Q Consensus 325 ri~~l~~G~~~ 335 (555)
+|++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999864
No 72
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.94 E-value=2.3e-26 Score=231.07 Aligned_cols=132 Identities=27% Similarity=0.429 Sum_probs=112.6
Q ss_pred CceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
++.|+++|+++.|++ ..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 357999999999975 4599999999999999999999999999999999999999999999998765
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...++ ..||.+++..... ... .+.+..+|..+++. +..++++..|||||||||+||
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHH
Confidence 37899998743443 6899999986532 111 23578899999995 678999999999999999986
No 73
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.94 E-value=2.1e-26 Score=224.99 Aligned_cols=129 Identities=29% Similarity=0.351 Sum_probs=111.7
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------e
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------L 489 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------~ 489 (555)
.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 68999999999888899999999999999999999999999999999999999999999988653 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .+++..||.|++..... .. ..+.+..+|..+++. +..++++..|||||||||+||
T Consensus 84 i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~la 152 (224)
T 2pcj_A 84 LGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIA 152 (224)
T ss_dssp EEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 78999985 46678899999976421 11 124578899999995 568999999999999999986
No 74
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=1.9e-26 Score=226.83 Aligned_cols=129 Identities=29% Similarity=0.371 Sum_probs=110.0
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 789999999963 3589999999999999999999999999999999999999999999998654
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc-----cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.||+..... ... ...+..+|+.+++.....++++..|||||||||+||
T Consensus 82 ~~~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 82 RDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred hccEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 278999986 47788899999976421 111 245778999999975445899999999999999986
No 75
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.93 E-value=1.8e-26 Score=239.08 Aligned_cols=129 Identities=28% Similarity=0.470 Sum_probs=114.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPN 491 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~ 491 (555)
.|+++|+++.|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 58999999999988899999999999999999999999999999999999999999999998765 268
Q ss_pred EEecCCccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++..||.||+...... .....+..+|..+++. +..+++|..|||||||||+||
T Consensus 84 ~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 84 YLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp EECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 999985 588999999999875321 1134578899999995 678999999999999999986
No 76
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.93 E-value=5.7e-26 Score=220.01 Aligned_cols=129 Identities=26% Similarity=0.400 Sum_probs=111.8
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEecC
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQN 496 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q~ 496 (555)
...|+++|+++.|++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 357999999999988 899999999999999999999999999999999999999999999998654 47899998
Q ss_pred CccCCCCCCCHHHHHHhhcc----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+++..||.|++..... ......+..+|..+++.. . ++++..|||||||||+||
T Consensus 87 ~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 87 I--IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLA 145 (214)
T ss_dssp C--CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHH
T ss_pred C--cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHH
Confidence 6 35677899999976421 123456888999999964 4 899999999999999986
No 77
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.93 E-value=4.2e-26 Score=227.77 Aligned_cols=129 Identities=26% Similarity=0.390 Sum_probs=112.1
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPN 491 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~ 491 (555)
.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 69999999999888899999999999999999999999999999999999999999999998654 268
Q ss_pred EEecCCccCCCCCCCHHHHHHhhc---ccCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++..||.|++.... .... .+.+..+|..+++. +..++++..|||||||||+||
T Consensus 104 ~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 104 MVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp EECSSC--CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEeCCC--cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 999985 4667889999997632 1111 23577899999995 578999999999999999986
No 78
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=4.5e-26 Score=227.74 Aligned_cols=130 Identities=26% Similarity=0.353 Sum_probs=112.2
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------------
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~------------- 489 (555)
+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 3689999999998888999999999999999999999999999999999999999999999886542
Q ss_pred ----------eEEEecCCccCCCCCCCHHHHHHhhc---ccCc----HHHHHHHHhhCCCChhh-hccccCCCChhHHhc
Q 008750 490 ----------PNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADM-LDRKVSLLSGGEKVN 551 (555)
Q Consensus 490 ----------~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~~~~~~-~~~~~~~LSGGek~R 551 (555)
++|++|++ .+++..||.+++.... .... ...+..+|..+++. +. .++++..||||||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp HHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHH
T ss_pred hhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHH
Confidence 68999985 4678889999997632 1111 23577899999996 45 799999999999999
Q ss_pred hhcC
Q 008750 552 QTLV 555 (555)
Q Consensus 552 v~La 555 (555)
|+||
T Consensus 162 v~lA 165 (262)
T 1b0u_A 162 VSIA 165 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 79
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=4.5e-29 Score=240.91 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=98.3
Q ss_pred EeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-------CCCceEEEEecccccCcCccH
Q 008750 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------KSNMKIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-------g~~~~ig~v~Q~~~~~~~~tv 178 (555)
+|+++.+|+|| ++|++++|+||||||||||+++|+|+ +|++|+|... .....+||+||++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 46667799996 89999999999999999999999999 9999998431 0123588888875
Q ss_pred HHHH-HHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 179 REEF-MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 179 ~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
.+|+ ... .... ..+. .. ....++.++++. |+
T Consensus 76 ~enl~~~~-~~~~----------~~~~------------------------~~---~~~~~~~~~l~~-gl--------- 107 (208)
T 3b85_A 76 NEKIDPYL-RPLH----------DALR------------------------DM---VEPEVIPKLMEA-GI--------- 107 (208)
T ss_dssp ----CTTT-HHHH----------HHHT------------------------TT---SCTTHHHHHHHT-TS---------
T ss_pred HHHHHHHH-HHHH----------HHHH------------------------Hh---ccHHHHHHHHHh-CC---------
Confidence 3333 110 0000 0000 00 001234444444 32
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
||||||+|||||+.+|++|||||||++ ++..+.++|++ .|.||| ||||++++.. +..+++|.
T Consensus 108 -----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 108 -----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp -----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred -----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 999999999999999999999999999 77777777764 478999 9999987753 33445553
No 80
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=3e-26 Score=230.84 Aligned_cols=134 Identities=20% Similarity=0.298 Sum_probs=112.2
Q ss_pred CCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------
Q 008750 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~----------- 489 (555)
+...|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 355799999999998888999999999999999999999999999999999999999999999986542
Q ss_pred -eEEEecCCccCCCCCCCHHHHHHhhcc-------cCc---HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 490 -PNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 -~~y~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~---~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++...++...||.|++..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lA 173 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIA 173 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 689999853234455799999975321 011 23577899999994 578999999999999999986
No 81
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.93 E-value=8.1e-26 Score=226.24 Aligned_cols=131 Identities=29% Similarity=0.450 Sum_probs=114.2
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~ 491 (555)
...|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 3579999999999988999999999999999999999999999999999999999999999998765 268
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+.+..||.+++..... ......+..+|..+++. +..++++..|||||||||+||
T Consensus 89 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iA 153 (266)
T 4g1u_C 89 VMRQYS--ELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLA 153 (266)
T ss_dssp EECSCC--CCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHH
T ss_pred EEecCC--ccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHH
Confidence 999985 35567899999986542 12245678899999995 578899999999999999986
No 82
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.93 E-value=5e-26 Score=237.33 Aligned_cols=129 Identities=29% Similarity=0.461 Sum_probs=114.0
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 48999999999988899999999999999999999999999999999999999999999998765 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.||+..... ... ...+..+|..+++. +..+++|..|||||||||+||
T Consensus 83 ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiA 145 (381)
T 3rlf_A 83 SY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIG 145 (381)
T ss_dssp TC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred CC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHH
Confidence 85 58899999999976532 111 24578899999995 578999999999999999986
No 83
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=6.7e-26 Score=223.65 Aligned_cols=131 Identities=24% Similarity=0.365 Sum_probs=111.3
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------ee
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~ 490 (555)
.+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .+
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 3469999999999888899999999999999999999999999999999999999999999998654 27
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhc-c--cCc--HHHHHHHHhhCC-CChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAA-E--DWR--IDDIKGLLGRCN-FKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~--~~~--~~~~~~~L~~~~-~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..||.|++.... . ... ...+..++..++ +. +..++++..|||||||||+||
T Consensus 84 ~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 84 ALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHH
T ss_pred EEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHH
Confidence 8999985 4667889999998653 1 111 234677888884 73 567899999999999999986
No 84
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2e-26 Score=237.30 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=76.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhc----cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcce
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~----~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dr 325 (555)
..++++..||||||||++||++|+ .+|++|||||||++||+...+.+.+++++ .+.|+|+|||+.+. ..+||+
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-~~~~d~ 290 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-MEAADL 290 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-GGGCSE
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-HhhCce
Confidence 356778899999999999999997 68999999999999999999999988754 37899999999764 468998
Q ss_pred e--EEecCCeEeeccCChH
Q 008750 326 I--VETEMGVSRTYEGNYS 342 (555)
Q Consensus 326 i--~~l~~G~~~~~~G~y~ 342 (555)
+ ++|.+|...+...+.+
T Consensus 291 ~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEEESSSCEEEEECCC-
T ss_pred EEEEEEeCCEEEEEEEEcc
Confidence 7 8889998766555444
No 85
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.93 E-value=1e-25 Score=233.46 Aligned_cols=133 Identities=29% Similarity=0.404 Sum_probs=115.4
Q ss_pred CCCceEEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------ee
Q 008750 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LP 490 (555)
Q Consensus 420 ~~~~~l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~ 490 (555)
.|...|+++|+++.| ++..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .+
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 456789999999999 777899999999999999999999999999999999999999999999998665 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..||.||+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 90 g~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 90 GLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHH
Confidence 8999985 47789999999976432 111 24578899999995 578999999999999999986
No 86
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.93 E-value=8.5e-26 Score=225.19 Aligned_cols=130 Identities=25% Similarity=0.331 Sum_probs=112.2
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeE
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPN 491 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~ 491 (555)
+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 469999999999888899999999999999999999999999999999999999999999998654 268
Q ss_pred EEecCCccCCCCCCCHHHHHHhhccc---------------Cc----HHHHHHHHhhCCCChhhhccccCCCChhHHhch
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAED---------------WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQ 552 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~---------------~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv 552 (555)
|++|++ .+++..||.|++...... .. ...+..+|..+++. +..++++..|||||||||
T Consensus 86 ~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 86 RTFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp ECCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHH
T ss_pred EEccCC--ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHHH
Confidence 999985 356778999999764211 11 23577899999995 578999999999999999
Q ss_pred hcC
Q 008750 553 TLV 555 (555)
Q Consensus 553 ~La 555 (555)
+||
T Consensus 163 ~iA 165 (257)
T 1g6h_A 163 EIG 165 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 87
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.1e-25 Score=224.08 Aligned_cols=130 Identities=25% Similarity=0.324 Sum_probs=112.3
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEE
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~ 493 (555)
..|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++|+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 469999999999888899999999999999999999999999999999999999999999998654 37899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..||.|++..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 94 ~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 94 PEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp CTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHH
T ss_pred cCCC--CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 9985 36678899999976421 111 23577889999995 578999999999999999986
No 88
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=1.1e-25 Score=233.30 Aligned_cols=132 Identities=27% Similarity=0.370 Sum_probs=112.9
Q ss_pred CCceEEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------
Q 008750 421 GRSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------- 488 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------- 488 (555)
.++.|+++|+++.|++ ..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 4568999999999964 3589999999999999999999999999999999999999999999998755
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.+|+..... ... ...+..+|..+++. +..+++|..|||||||||+||
T Consensus 101 ~~~r~~Ig~v~Q~~--~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 101 TKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHTTEEEECSSC--CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCC--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 378999986 47788999999986532 111 23577899999995 578999999999999999986
No 89
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=1.3e-26 Score=216.71 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=99.3
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc-CccHHHHHHHhhHHHHHHH
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM-SRTVREEFMSAFKEEMEIA 193 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~-~~tv~e~~~~~~~~~~~~~ 193 (555)
||||+|++||+++|+|+||||||||++++.+-.. .+.. +.-.|+++|++.... ..++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~-d~~~g~~~~~~~~~~~~~~~~~~~~~--------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISS-DFCRGLMSDDENDQTVTGAAFDVLHY--------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEH-HHHHHHHCSSTTCGGGHHHHHHHHHH---------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEcc-HHHHHHhcCcccchhhHHHHHHHHHH---------
Confidence 6899999999999999999999999998653221 1111 111255666543211 1111111100
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 008750 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
... .....|... ..+. ....|||||||++||||
T Consensus 65 --------------------------------------------~~~-~~~~~g~~~-~~~~-~~~~s~g~~qrv~iAra 97 (171)
T 4gp7_A 65 --------------------------------------------IVS-KRLQLGKLT-VVDA-TNVQESARKPLIEMAKD 97 (171)
T ss_dssp --------------------------------------------HHH-HHHHTTCCE-EEES-CCCSHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHH-HHHhCCCeE-EEEC-CCCCHHHHHHHHHHHHH
Confidence 000 011123322 1222 34579999999999999
Q ss_pred hccCCCEEEEcCCCCCCCHH----------------HHHHHHHHHc---CCCceEEEEecCHHHHHhhccee
Q 008750 274 LLQDPDLLLLDEPTNHLDLD----------------TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~----------------~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri 326 (555)
|+.+|++|+|||||++||+. ....+.+.++ +.|.|+|+||||++++.. ++++
T Consensus 98 l~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 98 YHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH-EEEE
T ss_pred cCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh-hhhc
Confidence 99999999999999999998 5577777753 348999999999999976 4443
No 90
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.92 E-value=2.1e-25 Score=231.57 Aligned_cols=129 Identities=28% Similarity=0.427 Sum_probs=113.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 48999999999888899999999999999999999999999999999999999999999998665 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhccc--Cc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+...... .. ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 83 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalA 145 (359)
T 2yyz_A 83 NY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALA 145 (359)
T ss_dssp SC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 85 477889999999875321 11 23578899999995 578999999999999999986
No 91
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.8e-25 Score=232.42 Aligned_cols=129 Identities=29% Similarity=0.408 Sum_probs=112.9
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 48999999999887899999999999999999999999999999999999999999999998765 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 83 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalA 145 (362)
T 2it1_A 83 NW--ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIA 145 (362)
T ss_dssp TC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHH
Confidence 85 47788999999986532 111 24578899999995 578999999999999999986
No 92
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=3e-26 Score=215.92 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=102.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEc----CCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKA----KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~----g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
+++|+|+||||||||+++|+|++... .|...-. .....+||++|++. +.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~----------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI----------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT------CCEEE-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc------HHHHH-----------------
Confidence 68999999999999999999998522 2322100 01235788888751 11111
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc-cccCCCCCCCChHHHHHHHHHHH-----
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKI----- 273 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~lAra----- 273 (555)
+..+++.. ...++++.+||||||||++||+|
T Consensus 59 -------------------------------------------~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~ 95 (178)
T 1ye8_A 59 -------------------------------------------FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREA 95 (178)
T ss_dssp -------------------------------------------EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHhhcCCccccccccccCcCHHHHHHHHHHhhccccc
Confidence 01111111 24567788999999999999996
Q ss_pred hccCCCEEEEcC--CCCCCCHHHHHHHHHHHcCCCceEEEEe---cCHHHHHhhcce
Q 008750 274 LLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMVIIS---HDRAFLDQLCTK 325 (555)
Q Consensus 274 L~~~p~lLlLDE--PTs~LD~~~~~~l~~~l~~~~~tvIiiS---Hd~~~l~~~~dr 325 (555)
|+.+|++||||| ||++||+...+++.+++.+.+.|+|++| ||+.++..+|++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999999999 9999999999999999988888888888 599999999998
No 93
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.92 E-value=3e-25 Score=231.47 Aligned_cols=129 Identities=29% Similarity=0.475 Sum_probs=109.0
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 48999999999888899999999999999999999999999999999999999999999998665 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 91 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalA 153 (372)
T 1v43_A 91 SY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVA 153 (372)
T ss_dssp --------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 85 47788999999987532 111 23578899999995 578999999999999999986
No 94
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.92 E-value=4.2e-25 Score=221.27 Aligned_cols=131 Identities=25% Similarity=0.358 Sum_probs=111.1
Q ss_pred eEEEEeeeEEcC--C---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeE
Q 008750 424 VVTIKNLEFGYE--D---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN 491 (555)
Q Consensus 424 ~l~~~~l~~~y~--~---~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~ 491 (555)
.|+++|+++.|+ + +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 478999999997 4 5699999999999999999999999999999999999999999999998654 378
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc-----cCcHHHHHHHHhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE-----DWRIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~~~~~~~~L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++...+ +..||.+++..... ......+..+|..+++.. +..++++..|||||||||+||
T Consensus 82 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHH
T ss_pred EEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHH
Confidence 9999853233 56799999986421 122456888999999963 578999999999999999986
No 95
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.92 E-value=2.7e-25 Score=229.97 Aligned_cols=127 Identities=27% Similarity=0.407 Sum_probs=111.7
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
|+++|+++.|+++ +++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|+
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 7899999999887 99999999999999999999999999999999999999999999998765 37899998
Q ss_pred CccCCCCCCCHHHHHHhhcc--c-CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE--D-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~-~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+++..||.||+..... . .....+..+|..+++. +..+++|..|||||||||+||
T Consensus 81 ~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalA 139 (348)
T 3d31_A 81 Y--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALA 139 (348)
T ss_dssp C--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHH
T ss_pred c--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 5 57788999999976432 1 1125688899999995 578999999999999999986
No 96
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.92 E-value=3.2e-25 Score=230.20 Aligned_cols=129 Identities=25% Similarity=0.398 Sum_probs=112.6
Q ss_pred eEEEEeeeEEcCCcc--ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008750 424 VVTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~--ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------- 488 (555)
.|+++|+++.|++.. +++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 489999999998777 99999999999999999999999999999999999999999999998654
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.||+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 83 ~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred CEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 268999985 47788999999987532 111 24578899999995 578999999999999999986
No 97
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.92 E-value=4.9e-25 Score=230.22 Aligned_cols=129 Identities=26% Similarity=0.410 Sum_probs=112.3
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------e
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------L 489 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------~ 489 (555)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 48999999999888899999999999999999999999999999999999999999999998654 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .+++..||.+|+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 83 ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 83 IAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp EEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHHH
Confidence 68999985 47789999999986532 111 23578899999995 578999999999999999986
No 98
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.91 E-value=1.2e-24 Score=215.59 Aligned_cols=130 Identities=25% Similarity=0.446 Sum_probs=105.2
Q ss_pred ceEEEEeeeEEc--CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y--~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
.-++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 348999999999 356799999999999999999999999999999999999999999999998654 27
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCCh----------hhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~----------~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++. ++. .||.+|+.........+.+...+..+++.. +.+++++..|||||||||+||
T Consensus 86 ~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 86 GVVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157 (247)
T ss_dssp EEECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred EEEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence 89999863 444 599999976543334455666677766631 123455689999999999986
No 99
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.91 E-value=1.4e-24 Score=215.72 Aligned_cols=126 Identities=27% Similarity=0.495 Sum_probs=108.3
Q ss_pred eEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCC
Q 008750 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (555)
Q Consensus 424 ~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~ 502 (555)
.|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+. -.++|++|++ .+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~---~~i~~v~q~~--~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY---QSIGFVPQFF--SSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC---SCEEEECSCC--CCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe---ccEEEEcCCC--ccC
Confidence 589999999998 7789999999999999999999999999999999999999999999854 2478999985 355
Q ss_pred CCCCHHHHHHhhcc---c-------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 503 LDKTVLETVAEAAE---D-------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 503 ~~~tv~e~l~~~~~---~-------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+..||.|++..... . .....+..+|..+++. +..++++..|||||||||+||
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHH
Confidence 67899999986531 1 1124578899999995 578899999999999999986
No 100
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=9.1e-25 Score=218.11 Aligned_cols=125 Identities=30% Similarity=0.436 Sum_probs=109.1
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeE-E
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN-Y 492 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~-y 492 (555)
|+++|+++.|++ +.+|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++ .++ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 789999999986 679999999999 9999999999999999999999999 9999999998654 478 9
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++. + ..||.+++..... ......+..+|..+++..+..++++..|||||||||+||
T Consensus 80 v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 80 LPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp CGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHH
T ss_pred eCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 999863 4 7899999976532 334567889999999963578999999999999999986
No 101
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.91 E-value=5.9e-25 Score=218.22 Aligned_cols=130 Identities=27% Similarity=0.347 Sum_probs=105.5
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCcee-----------ee
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNV-----------LP 490 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~--~~p~~G~v~~~~~~~-----------~~ 490 (555)
.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++ .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999888899999999999999999999999999999999998 789999999998654 15
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc---c--Cc----HHHHHHHHhhCCCChhhhccccCC-CChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE---D--WR----IDDIKGLLGRCNFKADMLDRKVSL-LSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~---~--~~----~~~~~~~L~~~~~~~~~~~~~~~~-LSGGek~Rv~La 555 (555)
+|++|++ .+++..||.+++..... . .. ...+..+|..+++..+..++++.. |||||||||+||
T Consensus 83 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 83 FLAFQYP--VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp CCCCCCC--C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred EEeccCC--ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 6889986 35678899999865321 1 11 235778899999965678999999 999999999986
No 102
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=1.5e-24 Score=213.74 Aligned_cols=125 Identities=27% Similarity=0.407 Sum_probs=107.8
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
|+++|+++.|++ +++++||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++|++|+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 689999999975 49999999999 99999999999999999999999999999999998654 36899998
Q ss_pred CccCCCCCCCHHHHHHhhcccC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+.+..||.|++....... ..+.+..+|..+++. +..++++..|||||||||+||
T Consensus 79 ~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 79 Y--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALA 138 (240)
T ss_dssp C--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHH
T ss_pred C--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHH
Confidence 5 4667889999997653211 134578899999995 568999999999999999986
No 103
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.91 E-value=1.7e-24 Score=216.97 Aligned_cols=132 Identities=27% Similarity=0.324 Sum_probs=109.1
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCcee-----------
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~--~~p~~G~v~~~~~~~----------- 488 (555)
.+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|.++
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4579999999999888899999999999999999999999999999999999 468999999998654
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhc-------c--cCc----HHHHHHHHhhCCCChhhhccccC-CCChhHHhchhc
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAA-------E--DWR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKVNQTL 554 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~-------~--~~~----~~~~~~~L~~~~~~~~~~~~~~~-~LSGGek~Rv~L 554 (555)
.++|++|++ .+.+..||.+++.... . ... ...+..+|..+++..+..++++. .|||||||||+|
T Consensus 98 ~i~~v~Q~~--~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 98 GIFMAFQYP--VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp TEEEECSSC--CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred CEEEEccCc--cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 168999986 4567889999986421 0 011 23577899999996556788887 599999999998
Q ss_pred C
Q 008750 555 V 555 (555)
Q Consensus 555 a 555 (555)
|
T Consensus 176 A 176 (267)
T 2zu0_C 176 L 176 (267)
T ss_dssp H
T ss_pred H
Confidence 6
No 104
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.91 E-value=6.8e-29 Score=252.16 Aligned_cols=164 Identities=12% Similarity=0.131 Sum_probs=123.5
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
..|+++||+|.|+ .++|++|||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++ .
T Consensus 100 ~~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~~lf-~ 166 (305)
T 2v9p_A 100 TFFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKSHFW-L 166 (305)
T ss_dssp HHHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTSGGG-G
T ss_pred CeEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------EEecCccccc-c
Confidence 3589999999998 77999999999999999999999999999999999999 89884 5678887764 4
Q ss_pred ccHHH-HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 176 RTVRE-EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 176 ~tv~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
.|+++ |+..... . ...+.+.++.+ ++. ..+
T Consensus 167 ~ti~~~ni~~~~~-------------------~----------------------------~~~~~~~i~~~-L~~-gld 197 (305)
T 2v9p_A 167 ASLADTRAALVDD-------------------A----------------------------THACWRYFDTY-LRN-ALD 197 (305)
T ss_dssp GGGTTCSCEEEEE-------------------E----------------------------CHHHHHHHHHT-TTG-GGG
T ss_pred ccHHHHhhccCcc-------------------c----------------------------cHHHHHHHHHH-hHc-cCC
Confidence 57776 5432100 0 00111122221 211 112
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
...|||||||| ||||+.+|+||| |++||+.+...+.. +||++..+ ..||+| +|++|++
T Consensus 198 --g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 198 --GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQ 255 (305)
T ss_dssp --TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---C
T ss_pred --ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEE
Confidence 56899999999 999999999999 99999998877752 29998877 579999 9999986
Q ss_pred eeccCChHHH
Q 008750 335 RTYEGNYSQY 344 (555)
Q Consensus 335 ~~~~G~y~~~ 344 (555)
++.|+..++
T Consensus 256 -v~~g~~~el 264 (305)
T 2v9p_A 256 -PFNITDADW 264 (305)
T ss_dssp -CCCCCHHHH
T ss_pred -EEeCCHHHH
Confidence 567887765
No 105
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.91 E-value=2.2e-24 Score=216.44 Aligned_cols=129 Identities=25% Similarity=0.411 Sum_probs=105.3
Q ss_pred ceEEEEeeeEEcCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008750 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (555)
Q Consensus 423 ~~l~~~~l~~~y~~---~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~ 489 (555)
..|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999976 6799999999999999999999999999999999999999999999998654 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcccCcH-H---------HHHHHHhhC--CCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRI-D---------DIKGLLGRC--NFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~-~---------~~~~~L~~~--~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .++. .||.||+......... . .+..++..+ ++. +..++++..|||||||||+||
T Consensus 95 i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 95 VAAVGQEP--LLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALA 168 (271)
T ss_dssp EEEECSSC--CCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHH
T ss_pred EEEEecCC--cccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHHH
Confidence 78999986 3444 5999999865322111 1 123456666 553 456889999999999999986
No 106
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.91 E-value=2.2e-24 Score=219.53 Aligned_cols=130 Identities=21% Similarity=0.377 Sum_probs=106.6
Q ss_pred ceEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeE
Q 008750 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (555)
Q Consensus 423 ~~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~ 491 (555)
..|+++||+|.|+ +..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 3589999999995 46799999999999999999999999999999999999999999999998765 378
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCCh----------hhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~----------~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .++ ..||.+|+..........++...+..+++.. ..+.+++..|||||||||+||
T Consensus 132 ~v~Q~~--~lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 132 VVPQDT--VLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EECSSC--CCC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEecCC--ccC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 999986 344 4599999987765445555655555555421 123456689999999999986
No 107
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.91 E-value=1.5e-24 Score=214.35 Aligned_cols=128 Identities=19% Similarity=0.383 Sum_probs=104.3
Q ss_pred EEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
|+++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 7899999999 567799999999999999999999999999999999999999999999998654 26899
Q ss_pred ecCCccCCCCCCCHHHHHHhh-cccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .++. .||.+|+... ........+...+..+++... .+++++..|||||||||+||
T Consensus 82 ~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 82 SQDS--AIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp CCSS--CCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred cCCC--cccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 9986 3444 5999999764 233344556777777776421 12356789999999999986
No 108
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=7.1e-24 Score=210.04 Aligned_cols=124 Identities=24% Similarity=0.385 Sum_probs=107.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
.|+++|+++. .+|+++||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++ .++|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 5899999986 5899999999999999999999999999999999999999 9999998654 27899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.|++..... ......+..+|..+++. +..++++..|||||||||+||
T Consensus 79 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 79 SQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLA 138 (249)
T ss_dssp CSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHH
T ss_pred CCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 9986 35677899999986431 11355688899999995 578899999999999999986
No 109
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1.7e-27 Score=251.50 Aligned_cols=171 Identities=11% Similarity=0.110 Sum_probs=131.0
Q ss_pred ceeeeeeeEEEECCC--------------------EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-eEEEEec
Q 008750 110 VTVLKDVTWEVKKGE--------------------KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQ 168 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge--------------------~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-~ig~v~Q 168 (555)
..+|++|||+|++|+ ++||+|+||||||||+|+|+|+++|++|+|.++|.+. +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 9999999999999999999999999999999887542 2378999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++ .++..|+.|+..... . ..++.++++.+++
T Consensus 116 ~~-~~~~ltv~D~~g~~~--------------------------------------------~----~~~~~~~L~~~~L 146 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS--------------------------------------------T----NFPPDTYLEKMKF 146 (413)
T ss_dssp CS-SCTTEEEEECCCGGG--------------------------------------------S----SCCHHHHHHHTTG
T ss_pred cc-ccCCeeehHhhcccc--------------------------------------------h----HHHHHHHHHHcCC
Confidence 85 345677766532110 0 1124556677776
Q ss_pred CccccCCCCCCCChH--HHHHHHHHHHhcc----------CCCEEEEcCCCCCCCHHHHHHHHHHHcC--------C---
Q 008750 249 TADDGDRLVASFSSG--WQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK--------Q--- 305 (555)
Q Consensus 249 ~~~~~~~~~~~LSGG--qrqRv~lAraL~~----------~p~lLlLDEPTs~LD~~~~~~l~~~l~~--------~--- 305 (555)
... +..+. |||| |+||++||++|+. +|++|+|||||++||+..+..+.+.+++ .
T Consensus 147 ~~~--~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 147 YEY--DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GGC--SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred Ccc--CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 432 33343 9999 9999999999999 9999999999999999877766654422 1
Q ss_pred -CceEEEEecCHHH--HHhhcceeE-EecCC
Q 008750 306 -DVPMVIISHDRAF--LDQLCTKIV-ETEMG 332 (555)
Q Consensus 306 -~~tvIiiSHd~~~--l~~~~dri~-~l~~G 332 (555)
..+|+++||++.. ++.+||+|. .|..|
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 3568889999987 899999986 34444
No 110
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.90 E-value=1.7e-23 Score=205.01 Aligned_cols=125 Identities=25% Similarity=0.405 Sum_probs=98.6
Q ss_pred eEEEEeeeEEcC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCC
Q 008750 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (555)
Q Consensus 424 ~l~~~~l~~~y~--~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l 501 (555)
.|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++ .+
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~--~~ 80 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFS--WI 80 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSC--CC
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCC--cc
Confidence 589999999995 46799999999999999999999999999999999999999999999987 488999986 34
Q ss_pred CCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 502 ~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
.+. ||.||+..... .........+..+++... .+++++..|||||||||+||
T Consensus 81 ~~~-tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 81 MPG-TIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp CSB-CHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred cCC-CHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 444 99999986532 122223334444443210 13345789999999999986
No 111
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.90 E-value=6.7e-24 Score=208.91 Aligned_cols=125 Identities=23% Similarity=0.381 Sum_probs=99.0
Q ss_pred eEEEEeeeEEcC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCC
Q 008750 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (555)
Q Consensus 424 ~l~~~~l~~~y~--~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l 501 (555)
.|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~--~ 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAW--I 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCC--C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCc--C
Confidence 489999999997 46799999999999999999999999999999999999999999999987 4899999862 4
Q ss_pred CCCCCHHHHHHhhcccCcHHHHHHHHhhCC------CCh----hhhccccCCCChhHHhchhcC
Q 008750 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCN------FKA----DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 502 ~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~------~~~----~~~~~~~~~LSGGek~Rv~La 555 (555)
+..||.+|+...... ........+..++ ..+ ..+++++..|||||||||+||
T Consensus 78 -~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 78 -QNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp -CSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred -CCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 467999999865321 1111222222222 211 125688999999999999986
No 112
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.90 E-value=1.3e-23 Score=209.63 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=104.3
Q ss_pred ceEEEEeeeEEcCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008750 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (555)
Q Consensus 423 ~~l~~~~l~~~y~~---~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~ 489 (555)
..|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++ .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 35899999999975 3699999999999999999999999999999999999987 89999998654 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .++. .||.+|+..........++...+..+++... .+++++..|||||||||+||
T Consensus 95 i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 95 IGIVPQDT--ILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp EEEECSSC--CCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred EEEEcCCC--cccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 78999986 3443 5999999865333344556677777765321 12467899999999999986
No 113
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=5.2e-25 Score=224.31 Aligned_cols=173 Identities=18% Similarity=0.247 Sum_probs=134.3
Q ss_pred eCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------------eEEEEeccc
Q 008750 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEF 170 (555)
Q Consensus 107 y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------------~ig~v~Q~~ 170 (555)
|+....++.+||++++|++++|||+||||||||+++|+|+++|++|+|.+.+.+. .|+|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 4333334678999999999999999999999999999999999999999987542 489999998
Q ss_pred c-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 171 E-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 171 ~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
. .++..++.+++..+.. . ..+ ..+++.+|+.
T Consensus 164 ~~~~~~~~v~e~l~~~~~----------------~--------------------------~~d------~~lldt~gl~ 195 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE----------------E--------------------------GYD------VVLCDTSGRL 195 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH----------------T--------------------------TCS------EEEECCCCCS
T ss_pred CccCHHHHHHHHHHHHHH----------------c--------------------------CCc------chHHhcCCCC
Confidence 7 7777788887642100 0 000 1246677775
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEec---------CHHH
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAF 318 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSH---------d~~~ 318 (555)
+ ..++++.+|| +||++|||||+.+|+ +|+|| ||++||+... +.++-+..+.|+|++|| .++.
T Consensus 196 ~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 196 H-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp S-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred c-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 3 4567788899 999999999999999 99999 9999998754 33333456899999999 7778
Q ss_pred HHhhcceeEEecCCeE
Q 008750 319 LDQLCTKIVETEMGVS 334 (555)
Q Consensus 319 l~~~~dri~~l~~G~~ 334 (555)
+..++..|.++..|..
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 8888899999998863
No 114
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.88 E-value=6e-23 Score=215.45 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=108.8
Q ss_pred ceEEEEeeeEEc--CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y--~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
..|+++|+++.| ++..+|+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|.++ .+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 458999999999 55679999999999999999999999999999999999998 899999998754 36
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCC-----------CChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~-----------LSGGek~Rv~La 555 (555)
+|++|++ .+++ .||.+|+.... .....++..+|..+++. +..+++|.. |||||||||+||
T Consensus 97 g~v~Q~~--~lf~-~tv~enl~~~~-~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 97 GVIPQKV--FIFS-GTFRKNLDPNA-AHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp EEESCCC--CCCS-EEHHHHHCTTC-CSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred EEEcCCc--ccCc-cCHHHHhhhcc-ccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 8999986 3544 59999996332 33456788899999995 578888888 999999999986
No 115
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=6.9e-26 Score=218.30 Aligned_cols=173 Identities=10% Similarity=-0.019 Sum_probs=106.7
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC------CCceEEEEecccccCcCccHHHHHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SNMKIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g------~~~~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
.++++| .+|++|++++|+||||||||||+|+|+|+++...+.+.+.+ ....++|++|++..++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 357888 79999999999999999999999999999863332221111 1124789999876655556555432
Q ss_pred HhhHHHHHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH------hhhcCCCccccCCC
Q 008750 184 SAFKEEMEIAGKLERVQKALES-AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL------MPELGFTADDGDRL 256 (555)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgl~~~~~~~~ 256 (555)
..... ..+ .. . ........+++.+. ++.+|+. ...+++
T Consensus 87 ~~~~~--------------~~n~~~-----~---------------g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~ 131 (207)
T 1znw_A 87 EWAEI--------------HGGLHR-----S---------------GTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTM 131 (207)
T ss_dssp EEEEE--------------GGGTEE-----E---------------EEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHC
T ss_pred eehhh--------------cCchhh-----c---------------CCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhc
Confidence 11000 000 00 0 00001122233333 4444442 334566
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCC----CHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEE
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL----DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~L----D~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
+..|| +|+.+|++++|||||++| |+..+..+.++++ +.+.|+|+||||++++..+||+|++
T Consensus 132 ~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 132 PEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp TTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred CCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence 67787 999999999999999998 6777777776653 3589999999999999999999998
Q ss_pred ec
Q 008750 329 TE 330 (555)
Q Consensus 329 l~ 330 (555)
|.
T Consensus 201 l~ 202 (207)
T 1znw_A 201 GT 202 (207)
T ss_dssp --
T ss_pred hc
Confidence 84
No 116
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=3.4e-24 Score=228.76 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=135.8
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------- 160 (555)
++.++++|+++.|+ +..+|+++ |+|.+|++++|+|+||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 35689999999997 67899999 9999999999999999999999999999999999999998862
Q ss_pred -----ceEEEEecc-cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 -----MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 -----~~ig~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
..++|++|+ ...+++.++.+|+...... + .. ...
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~--------------~------------------------~~-~~~- 247 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAED--------------F------------------------RD-RGQ- 247 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHH--------------H------------------------HT-TTC-
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHH--------------H------------------------Hh-CCC-
Confidence 258999995 4444566777765431100 0 00 000
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC-------Cc
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ-------DV 307 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~-------~~ 307 (555)
.++. ..+. +..||+|| |||+|| +.+|++ |++||+.....+.+++.+. |.
T Consensus 248 ------~v~~-------~ld~-l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gs 303 (438)
T 2dpy_A 248 ------HVLL-------IMDS-LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGS 303 (438)
T ss_dssp ------EEEE-------EEEC-HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCE
T ss_pred ------CHHH-------HHHh-HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCc
Confidence 0000 1111 45799999 999999 888888 9999999999999988542 42
Q ss_pred -----eEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 308 -----PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 308 -----tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
||+++|||++ ..+||++++|.+|+++
T Consensus 304 iT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 304 ITAFYTVLTEGDDQQ--DPIADSARAILDGHIV 334 (438)
T ss_dssp EEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE
T ss_pred ccceeEEEEeCCCcc--chhhceEEEEeCcEEE
Confidence 8999999999 5789999999999864
No 117
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.87 E-value=1.3e-21 Score=202.76 Aligned_cols=78 Identities=23% Similarity=0.396 Sum_probs=68.3
Q ss_pred ccCCCCCCCChHHHH------HHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 252 DGDRLVASFSSGWQM------RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 252 ~~~~~~~~LSGGqrq------Rv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
..++++.+||||||| |+++|++|+.+|++|||||||++||+..+..+.++|.+ .+.|||+||||.++ ..+
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~ 319 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDA 319 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHh
Confidence 346788999999999 67888999999999999999999999999998887753 46799999999765 578
Q ss_pred cceeEEec
Q 008750 323 CTKIVETE 330 (555)
Q Consensus 323 ~dri~~l~ 330 (555)
||+|++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999986
No 118
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.87 E-value=3.6e-22 Score=221.37 Aligned_cols=130 Identities=23% Similarity=0.384 Sum_probs=108.2
Q ss_pred ceEEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
..++++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 35899999999974 6799999999999999999999999999999999999999999999998665 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhc-ccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++. ++. .||.||+.... +....+++...+..+++... .+.++...|||||||||+||
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 420 ALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred EEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 89999863 444 49999998764 44556677888888877421 12345689999999999986
No 119
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.87 E-value=4.3e-22 Score=220.71 Aligned_cols=130 Identities=25% Similarity=0.381 Sum_probs=108.6
Q ss_pred ceEEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
..++++|+++.|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 35899999999973 6799999999999999999999999999999999999999999999998765 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhc-ccCcHHHHHHHHhhCCCCh----------hhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~~~~----------~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++. ++. .||.||+.... +....+++...+..+++.. ..+.+++..|||||||||+||
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 420 ALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp EEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred eEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 89999863 444 49999998764 4455677888888887742 112345689999999999986
No 120
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=9.3e-24 Score=219.25 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=132.6
Q ss_pred eeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------------eEEEEecccc-cCcCc
Q 008750 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFE-VSMSR 176 (555)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------------~ig~v~Q~~~-~~~~~ 176 (555)
..+||++++|++++|||+||||||||+++|+|+++|++|+|.+.+.+. .|+|++|++. .++..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 468999999999999999999999999999999999999999987542 4899999987 77777
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
++.+++..+.. . ..+ ..+++.+|+.+ ..++.
T Consensus 228 tv~e~l~~~~~----------------~------------------------~~d--------~~lldt~Gl~~-~~~~~ 258 (359)
T 2og2_A 228 VLSKAVKRGKE----------------E------------------------GYD--------VVLCDTSGRLH-TNYSL 258 (359)
T ss_dssp HHHHHHHHHHH----------------T------------------------TCS--------EEEEECCCCSS-CCHHH
T ss_pred hHHHHHHHHHh----------------C------------------------CCH--------HHHHHhcCCCh-hhhhH
Confidence 88887642110 0 000 12466777753 44677
Q ss_pred CCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEec---------CHHHHHhhcce
Q 008750 257 VASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAFLDQLCTK 325 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSH---------d~~~l~~~~dr 325 (555)
+.+|| +||++|||+|+.+|+ +|+|| ||++||+.... ..+-+..+.|+|++|| .++.+...+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 88899 999999999999999 99999 99999987543 3333456899999999 57788888899
Q ss_pred eEEecCCe
Q 008750 326 IVETEMGV 333 (555)
Q Consensus 326 i~~l~~G~ 333 (555)
|.++..|.
T Consensus 333 I~~ig~Ge 340 (359)
T 2og2_A 333 VKFIGVGE 340 (359)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 99998885
No 121
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.86 E-value=2.2e-21 Score=212.07 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=69.5
Q ss_pred CCCCCC-ChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEe
Q 008750 255 RLVASF-SSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 255 ~~~~~L-SGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
+++..| ||||+|||+||++|+.+| ++|||||||++||+.+...+.++|++ .+.|||+||||++++. .||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 567788 999999999999999999 99999999999999999998887753 2899999999999886 69999999
Q ss_pred cCC
Q 008750 330 EMG 332 (555)
Q Consensus 330 ~~G 332 (555)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
No 122
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.86 E-value=2.3e-25 Score=227.90 Aligned_cols=180 Identities=8% Similarity=0.071 Sum_probs=129.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEE-----------------------EECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWE-----------------------VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~-----------------------i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
..|+++||++.|+ +++++++|. +++|+++||+|+||||||||+++|+|+++|+.|
T Consensus 42 ~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 42 EQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 3589999999994 677777764 899999999999999999999999999999866
Q ss_pred EEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 153 ~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
. ..++||+|+..+++. |+.+|+..... . ....
T Consensus 120 ~-------~~v~~v~qd~~~~~~-t~~e~~~~~~~------------------~----------------------g~~~ 151 (312)
T 3aez_A 120 H-------PRVDLVTTDGFLYPN-AELQRRNLMHR------------------K----------------------GFPE 151 (312)
T ss_dssp C-------CCEEEEEGGGGBCCH-HHHHHTTCTTC------------------T----------------------TSGG
T ss_pred C-------CeEEEEecCccCCcc-cHHHHHHHHHh------------------c----------------------CCCh
Confidence 4 358999999887665 88887532100 0 0000
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-CCceEEE
Q 008750 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVI 311 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~-~~~tvIi 311 (555)
......+.++++.++ . ...+.++..|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+ .+ .+|+
T Consensus 152 ~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D-~~I~ 223 (312)
T 3aez_A 152 SYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFD-FSLY 223 (312)
T ss_dssp GBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCS-EEEE
T ss_pred HHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcC-cEEE
Confidence 111234455566665 2 23356677999999999999999999999999999999998521 11222 34 4577
Q ss_pred EecCHHHH-HhhcceeEEecCCe
Q 008750 312 ISHDRAFL-DQLCTKIVETEMGV 333 (555)
Q Consensus 312 iSHd~~~l-~~~~dri~~l~~G~ 333 (555)
|+|+.+.. ...++|.+.+.++.
T Consensus 224 V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 224 VDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEECHHHHHHHHHHHHHHHTTTG
T ss_pred EECCHHHHHHHHHHHHHHHHhcc
Confidence 88888664 34566666665543
No 123
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.86 E-value=8.1e-22 Score=219.07 Aligned_cols=128 Identities=31% Similarity=0.493 Sum_probs=106.5
Q ss_pred EEEEeeeEEcCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeE
Q 008750 425 VTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (555)
Q Consensus 425 l~~~~l~~~y~~---~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~ 491 (555)
|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 899999999974 3699999999999999999999999999999999999999999999998755 378
Q ss_pred EEecCCccCCCCCCCHHHHHHhhccc---CcHHHHHHHHhhCCCCh------h----hhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKA------D----MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~~~~------~----~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .++. .||.||+....+. ...+++...+..+++.. + .+..++..|||||||||+||
T Consensus 422 ~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 422 TVSQEP--ILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp EECSSC--CCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred EEccCC--cccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 999986 3444 5999999876543 45677888888887631 1 12334589999999999986
No 124
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.86 E-value=7.8e-22 Score=218.43 Aligned_cols=130 Identities=27% Similarity=0.403 Sum_probs=107.0
Q ss_pred ceEEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
.-++++|++|+|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35899999999974 4799999999999999999999999999999999999999999999998765 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCCh----------hhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~----------~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .++. .||.||+....+....+++...+...++.. .....+...|||||||||+||
T Consensus 418 ~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 418 GLVQQDN--ILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp EEECSSC--CCCS-SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred EEEeCCC--ccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence 8999986 3544 499999987765555666666666665521 123345579999999999986
No 125
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.86 E-value=6.8e-22 Score=199.98 Aligned_cols=123 Identities=24% Similarity=0.418 Sum_probs=84.9
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCC
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~ 502 (555)
..|+++|+++.+ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++ .++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~--~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNS--WIM 111 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSC--CCC
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCC--ccC
Confidence 358999999864 5689999999999999999999999999999999999999999999987 478999986 344
Q ss_pred CCCCHHHHHHhhcccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 503 ~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
+ .||.+++. .. ......+...+..+++... .+.+++..|||||||||+||
T Consensus 112 ~-~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 112 P-GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp S-SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred c-ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 4 49999998 32 1222223344444444211 12345689999999999986
No 126
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.86 E-value=4.9e-25 Score=214.33 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=103.8
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEEecccccCcCccHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v~Q~~~~~~~~tv~ 179 (555)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+ ..++|++|++.++..++..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99988 432 2467888876543221100
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (555)
..+ ++... ..+ ...+ .....+.++++...+. ..+ .+
T Consensus 87 ~~~--------------------l~~~~----~~~-------------~~~g--~~~~~i~~~l~~~~~~--il~---~~ 122 (218)
T 1z6g_A 87 EDF--------------------LEYDN----YAN-------------NFYG--TLKSEYDKAKEQNKIC--LFE---MN 122 (218)
T ss_dssp TCE--------------------EEEEE----ETT-------------EEEE--EEHHHHHHHHHTTCEE--EEE---EC
T ss_pred cch--------------------hhhhh----ccc-------------ccCC--CcHHHHHHHHhCCCcE--EEE---ec
Confidence 000 00000 000 0000 0012334444443321 112 47
Q ss_pred CChHHHHHHHH-----HHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----------CCceEEEEecCHHHHHhhcc
Q 008750 260 FSSGWQMRMSL-----GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----------QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 260 LSGGqrqRv~l-----AraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----------~~~tvIiiSHd~~~l~~~~d 324 (555)
|||||+||++| |++|+.+|++++|||||+++|..+...+.+.+.+ ...+.|+++||++.+...++
T Consensus 123 lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~ 202 (218)
T 1z6g_A 123 INGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLK 202 (218)
T ss_dssp HHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHH
Confidence 89999999999 8999999999999999999998776666655431 34567777788777777777
Q ss_pred eeEE
Q 008750 325 KIVE 328 (555)
Q Consensus 325 ri~~ 328 (555)
+|+.
T Consensus 203 ~ii~ 206 (218)
T 1z6g_A 203 NYLL 206 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 127
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.85 E-value=1.8e-22 Score=234.76 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=118.1
Q ss_pred CccEEEEe-----EEEEe-CCceeeeeeeEEEEC-------CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc
Q 008750 95 SSGVKLEN-----ISKSY-KGVTVLKDVTWEVKK-------GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161 (555)
Q Consensus 95 ~~~i~l~n-----ls~~y-~~~~vL~~vsl~i~~-------Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~ 161 (555)
.++|+++| |++.| ++..+++||+|++.+ |++++|+||||||||||||+| |++.+- .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH----------h
Confidence 45799999 99999 667899999999987 999999999999999999999 998651 1
Q ss_pred eEE-EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 KIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 ~ig-~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
++| ||||+.. ..+|.+++.
T Consensus 817 qiG~~Vpq~~~---~l~v~d~I~--------------------------------------------------------- 836 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RLTPIDRVF--------------------------------------------------------- 836 (1022)
T ss_dssp TTTCCEESSEE---EECCCSBEE---------------------------------------------------------
T ss_pred heeEEeccCcC---CCCHHHHHH---------------------------------------------------------
Confidence 345 8999753 334433321
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHH-HHHHH---HHHcC-CCceEEEEecC
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLE---GYLGK-QDVPMVIISHD 315 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~-~~~l~---~~l~~-~~~tvIiiSHd 315 (555)
..+|+. +...+..+++|+++++ +++|++++.+|+++||||||+|+|+.. ...++ +.|.+ .|.++|++||+
T Consensus 837 ---~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 837 ---TRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ---EECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred ---HHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 122322 1222344678888775 999999999999999999999999865 33333 34444 48999999999
Q ss_pred HHHHHhhcceeEEecCCeEe
Q 008750 316 RAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~ 335 (555)
.+++..+||++++++ |++.
T Consensus 912 ~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 912 HSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp HHHHHHTSSCSSEEE-EEEE
T ss_pred HHHHHHhCCcceeec-CeEE
Confidence 999999999998874 6554
No 128
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=4.4e-21 Score=199.44 Aligned_cols=84 Identities=18% Similarity=0.067 Sum_probs=74.1
Q ss_pred CCCCC-CCChHHHHHHHHHHHhc---------cCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhc
Q 008750 254 DRLVA-SFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 254 ~~~~~-~LSGGqrqRv~lAraL~---------~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~ 323 (555)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.+.+.+.|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 56777 79999999999999999 8999999999999999999999999997766899999995 43 89
Q ss_pred ceeEEecCCeEeeccCChH
Q 008750 324 TKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~ 342 (555)
|++++|++|++. ..|+..
T Consensus 335 ~~i~~l~~G~i~-~~g~~~ 352 (359)
T 2o5v_A 335 ALTLRAQAGRFT-PVADEE 352 (359)
T ss_dssp SEEEEEETTEEE-ECCCTT
T ss_pred CEEEEEECCEEE-ecCCHH
Confidence 999999999974 456544
No 129
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=7.1e-22 Score=219.52 Aligned_cols=128 Identities=22% Similarity=0.353 Sum_probs=106.3
Q ss_pred eEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEE
Q 008750 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (555)
Q Consensus 424 ~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y 492 (555)
-|+++|++|.|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 4899999999964 5799999999999999999999999999999999999999999999998766 3789
Q ss_pred EecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhcc-----------ccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-----------KVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~-----------~~~~LSGGek~Rv~La 555 (555)
++|++ .++ +.||.||+....+....+++...+...++. +..++ +...|||||||||+||
T Consensus 434 v~Q~~--~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iA 503 (598)
T 3qf4_B 434 VLQDT--ILF-STTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503 (598)
T ss_dssp ECTTC--CCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHH
T ss_pred EeCCC--ccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 99986 343 459999998765544555677777777663 23333 3479999999999986
No 130
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=1.2e-21 Score=217.22 Aligned_cols=130 Identities=28% Similarity=0.380 Sum_probs=106.4
Q ss_pred ceEEEEeeeEEcC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~--~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
..|+++|++|+|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 3589999999995 35799999999999999999999999999999999999999999999998766 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCC----------hhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~----------~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .++ +.||.||+....+....+++...+...++. .....+++..||||||||++||
T Consensus 420 ~~v~Q~~--~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 420 SAVPQET--VLF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA 491 (587)
T ss_dssp EEECSSC--CCC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHH
T ss_pred EEECCCC--cCc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHH
Confidence 8999986 344 349999998765555555555555544432 1234677899999999999986
No 131
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=2.2e-23 Score=215.11 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=106.6
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHH
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~ 179 (555)
+++++| | .++++++||.|++|++++|+|+||||||||+++|+|+++|++|.|.++|.+. ..+... +
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--------~~~~~~---~ 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--------IVFKHH---K 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--------CCCSSC---S
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--------cccccc---h
Confidence 444444 4 3489999999999999999999999999999999999999999999987531 000000 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (555)
..+++ +..
T Consensus 217 ----------------------------------------------------------------~~i~~--------~~g 224 (330)
T 2pt7_A 217 ----------------------------------------------------------------NYTQL--------FFG 224 (330)
T ss_dssp ----------------------------------------------------------------SEEEE--------ECB
T ss_pred ----------------------------------------------------------------hEEEE--------EeC
Confidence 00000 001
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
|||+||++||+||..+|++|||||||+. +..+.| +.+...+.|+|+++|+.+ +...||||++|.+|.
T Consensus 225 --gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 --GNITSADCLKSCLRMRPDRIILGELRSS---EAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp --TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred --CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 8999999999999999999999999982 344433 333333458999999999 556899999998875
No 132
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.83 E-value=1.6e-22 Score=209.60 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=125.2
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------ 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------ 161 (555)
++.++++++++.|+ +..+++++ |+|.+|+++||+|+||||||||+++|+|+..|+.|.|.+.|.+.
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 35689999999997 77899999 99999999999999999999999999999999999988776431
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.+.+++|... +..+.+...+ ..+
T Consensus 122 ~~~~~~v~~~~~~~~-----~~~~r~~~~~--------------~~~--------------------------------- 149 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----PALERMKAAF--------------TAT--------------------------------- 149 (347)
T ss_dssp HHHTTEEEEEECTTS-----CHHHHHHHHH--------------HHH---------------------------------
T ss_pred hhhhceEEEEECCCC-----CHHHHHHHHH--------------HHH---------------------------------
Confidence 1344443211 1111110000 000
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-----CCc----
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDV---- 307 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~-----~~~---- 307 (555)
.+.+++...|-.....-..+..||+|| |||++| +.+|++ |+|||+.....+.+++.+ .|.
T Consensus 150 -~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~ 218 (347)
T 2obl_A 150 -TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAI 218 (347)
T ss_dssp -HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEE
T ss_pred -HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeE
Confidence 000000111110001113467899999 899999 688887 999999999999998854 255
Q ss_pred -eEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 308 -PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 308 -tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
||+++|||++ ..+||++++|.+|+++
T Consensus 219 ~tVl~~thdl~--~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 219 YTVLLESDNVN--DPIGDEVRSILDGHIV 245 (347)
T ss_dssp EEEECCSSCCC--CHHHHHHHHHCSEEEE
T ss_pred EEEEEeCCCCC--ChhhhheEEeeCcEEE
Confidence 8999999999 6789999999999874
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=7.8e-23 Score=205.10 Aligned_cols=141 Identities=15% Similarity=0.173 Sum_probs=88.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (555)
.++|||+||||||||+++|+|+..|++|+|.++|.+ ..++|++|++.+++.+||.|++..+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~---------- 73 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ---------- 73 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh----------
Confidence 589999999999999999999999999999988753 369999999988888899887643210
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 008750 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (555)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~ 277 (555)
... ....+.+..++. ....++.+.+|||||+||++||||++.
T Consensus 74 ---------~~~-----------------------~~~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~- 115 (270)
T 3sop_A 74 ---------INN-----------------------ENCWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC- 115 (270)
T ss_dssp ---------SBC-----------------------TTCSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE-
T ss_pred ---------ccc-----------------------HHHHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee-
Confidence 000 000000111111 012233456899999999999999986
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHH
Q 008750 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (555)
Q Consensus 278 p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~ 317 (555)
+++|||||++||+...+.+.. |.+. .++|+|.|..+
T Consensus 116 --lllldep~~gL~~lD~~~l~~-L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 116 --LYFISPTGHSLRPLDLEFMKH-LSKV-VNIIPVIAKAD 151 (270)
T ss_dssp --EEEECCCSSSCCHHHHHHHHH-HHTT-SEEEEEETTGG
T ss_pred --eEEEecCCCcCCHHHHHHHHH-HHhc-CcEEEEEeccc
Confidence 999999999999988665554 4444 88999888743
No 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.83 E-value=9.3e-22 Score=215.49 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=121.1
Q ss_pred EEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 98 i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
++++++++.|++ ..+| +..|.+|++++|+|+||||||||+++|+|...|. |+ .-+.|++|++..
T Consensus 258 ~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------~vi~~~~ee~~~---- 322 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------RAILFAYEESRA---- 322 (525)
T ss_dssp CCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------CEEEEESSSCHH----
T ss_pred cccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------CEEEEEEeCCHH----
Confidence 455666654433 1233 4489999999999999999999999999998875 43 113556665421
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
.+..+.. .++. ... + +...|+. ...+++
T Consensus 323 ~l~~~~~---------------------------------------------~~g~-~~~----~-~~~~g~~-~~~~~~ 350 (525)
T 1tf7_A 323 QLLRNAY---------------------------------------------SWGM-DFE----E-MERQNLL-KIVCAY 350 (525)
T ss_dssp HHHHHHH---------------------------------------------TTSC-CHH----H-HHHTTSE-EECCCC
T ss_pred HHHHHHH---------------------------------------------HcCC-CHH----H-HHhCCCE-EEEEec
Confidence 1111100 0000 111 1 1123332 345677
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHH-----HHHHHHHHH---cCCCceEEEEecCH----------HH
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-----TIEWLEGYL---GKQDVPMVIISHDR----------AF 318 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~-----~~~~l~~~l---~~~~~tvIiiSHd~----------~~ 318 (555)
+.+|||||+||+++|+++..+|++||+| ||++||.. .++.+.+++ ++.|.|+|+|||+. .+
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~ 429 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSH 429 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSC
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcc
Confidence 8899999999999999999999999999 99999998 777766654 56799999999999 78
Q ss_pred HHhhcceeEEecCCe
Q 008750 319 LDQLCTKIVETEMGV 333 (555)
Q Consensus 319 l~~~~dri~~l~~G~ 333 (555)
+..+||+|++|+.|.
T Consensus 430 l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 430 ISTITDTIILLQYVE 444 (525)
T ss_dssp CTTTCSEEEEEEEEE
T ss_pred cceeeeEEEEEEEEE
Confidence 888999999999876
No 135
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.81 E-value=3.2e-21 Score=195.72 Aligned_cols=180 Identities=21% Similarity=0.150 Sum_probs=110.3
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCCCceEEEEecccccCcCccHHHHHHHhhHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (555)
.++|+++++.|++|++++|+|+||||||||++.|+|.+.|++| .|.+ +..+. +..+...
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~---------~~~e~------~~~~~~~----- 81 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL---------AMLEE------SVEETAE----- 81 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE---------EESSS------CHHHHHH-----
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE---------EeCcC------CHHHHHH-----
Confidence 3589999999999999999999999999999999999998877 5543 22211 1111000
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHH-HHH
Q 008750 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW-QMR 267 (555)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq-rqR 267 (555)
++....... +......+ .. ..+...+....+..++...++. ....+..+|.+| +||
T Consensus 82 ---------r~~~~~~~~--~~~~~~~l-~~--------~~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~ 138 (296)
T 1cr0_A 82 ---------DLIGLHNRV--RLRQSDSL-KR--------EIIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAK 138 (296)
T ss_dssp ---------HHHHHHTTC--CGGGCHHH-HH--------HHHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHH
T ss_pred ---------HHHHHHcCC--Chhhcccc-cc--------CCCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHH
Confidence 000000000 00000000 00 0001112233444555443331 223345789999 666
Q ss_pred HHHHHHhccCCCEEEEcCCCC---C---CCH-HHHHHHHHHH----cCCCceEEEEecCH--H-----------------
Q 008750 268 MSLGKILLQDPDLLLLDEPTN---H---LDL-DTIEWLEGYL----GKQDVPMVIISHDR--A----------------- 317 (555)
Q Consensus 268 v~lAraL~~~p~lLlLDEPTs---~---LD~-~~~~~l~~~l----~~~~~tvIiiSHd~--~----------------- 317 (555)
+. |+++..+|++||+||||+ + +|. .....+.+.| ++.+.|||++||+. +
T Consensus 139 ~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~ 217 (296)
T 1cr0_A 139 LA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLR 217 (296)
T ss_dssp HH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC
T ss_pred HH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhc
Confidence 66 999999999999999999 4 454 4445555554 34699999999994 5
Q ss_pred ---HHHhhcceeEEecCCe
Q 008750 318 ---FLDQLCTKIVETEMGV 333 (555)
Q Consensus 318 ---~l~~~~dri~~l~~G~ 333 (555)
.+.++||+|++|+.|+
T Consensus 218 ~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 218 GSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ---CHHHHCSEEEEEEEC-
T ss_pred ccHHhHhhCcEEEEEecCc
Confidence 7888999999998875
No 136
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.81 E-value=8.2e-21 Score=214.72 Aligned_cols=185 Identities=17% Similarity=0.133 Sum_probs=129.2
Q ss_pred HhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEe---CCceeeeeeeEEEECCCE
Q 008750 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY---KGVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y---~~~~vL~~vsl~i~~Ge~ 125 (555)
+......++....+.+.++-+++....... ..-..|.. .+.|.+++...-+ ++..+++|+||+ |++
T Consensus 510 i~~~~~~l~~~~~~la~LD~l~s~a~~a~~--~~~~~P~~------~~~i~i~~~rHP~le~~~~~vl~disl~---g~i 578 (765)
T 1ewq_A 510 AKRQAEALREAARILAELDVYAALAEVAVR--YGYVRPRF------GDRLQIRAGRHPVVERRTEFVPNDLEMA---HEL 578 (765)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCBCCEE------SSSEEEEEECCTTGGGTSCCCCEEEEES---SCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--CCceeecc------CCcEEEEEeECceEccCCceEeeeccCC---CcE
Confidence 333444445566666667766665432211 11112221 3458888884333 346799999999 999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (555)
++|+||||||||||||+|+|+.. ++.|.+... ....+++++| ++...++.+++
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~---i~~~~~~~d~l---------------------- 632 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG---IYTRIGASDDL---------------------- 632 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE---EEEECCC--------------------------
T ss_pred EEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH---hhccCCHHHHH----------------------
Confidence 99999999999999999999874 677875422 2235677766 22333444332
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHh--ccCCCEEE
Q 008750 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLL 282 (555)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL--~~~p~lLl 282 (555)
...+|+|+++++.+|++| +.+|+++|
T Consensus 633 ----------------------------------------------------~~g~S~~~~e~~~la~il~~a~~p~LlL 660 (765)
T 1ewq_A 633 ----------------------------------------------------AGGKSTFMVEMEEVALILKEATENSLVL 660 (765)
T ss_dssp ------------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEE
T ss_pred ----------------------------------------------------HhcccHHHHHHHHHHHHHHhccCCCEEE
Confidence 124799999999999999 99999999
Q ss_pred EcCC---CCCCCHHHH-HHHHHHHcCCCceEEEEecCHHHHHhhc
Q 008750 283 LDEP---TNHLDLDTI-EWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 283 LDEP---Ts~LD~~~~-~~l~~~l~~~~~tvIiiSHd~~~l~~~~ 323 (555)
|||| |++||..+. ..+.+.|.+.|.|+|++|||.++.. +|
T Consensus 661 LDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 661 LDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred EECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 9999 999999886 4577777767899999999998874 44
No 137
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=8.3e-21 Score=187.56 Aligned_cols=169 Identities=11% Similarity=0.105 Sum_probs=101.9
Q ss_pred CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhH
Q 008750 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (555)
Q Consensus 108 ~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~ 187 (555)
+++++|+||||++++|+++||+|+||||||||+++|+|++ |.+.++.....++|++|+. ++...|+.+++.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-CccccCHhHhhhhhcc
Confidence 4567999999999999999999999999999999999976 4443332234689999995 5566788876532100
Q ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHH
Q 008750 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (555)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (555)
. .. ..+. .... ...+.+.|+.+. ...++.+..||+||+||
T Consensus 85 ~---------------~~-~~~~--------------------~~~~-~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r 124 (245)
T 2jeo_A 85 Q---------------YN-FDHP--------------------DAFD-NDLMHRTLKNIV---EGKTVEVPTYDFVTHSR 124 (245)
T ss_dssp C---------------CC-TTSG--------------------GGBC-HHHHHHHHHHHH---TTCCEEECCEETTTTEE
T ss_pred C---------------CC-CCCc--------------------cccc-HHHHHHHHHHHH---CCCCeecccccccccCc
Confidence 0 00 0000 0000 112223333321 12356678999999999
Q ss_pred HHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecC-HHHHHhhcceeEEecCC
Q 008750 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD-RAFLDQLCTKIVETEMG 332 (555)
Q Consensus 268 v~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd-~~~l~~~~dri~~l~~G 332 (555)
+++ ++++.+|+++|||||...+|.. +.+ -.+.+|+++||+ ......+++++ ++|
T Consensus 125 ~~~-~~~~~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 125 LPE-TTVVYPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CSS-CEEECCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cCc-eEEecCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 988 6889999999999999888764 222 248899999997 44445555555 555
No 138
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.80 E-value=1.4e-21 Score=194.91 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=108.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCCCceEEEEecccccCcCc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+...+.
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~v-- 75 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSIV-- 75 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSEE--
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCcceee--
Confidence 456677642 5899999 9999999999999999999999999999998 9999988754 345554321100
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
. . ..+|+..
T Consensus 76 ------------------------------------------------------~-q----------~~~gl~~------ 84 (261)
T 2eyu_A 76 ------------------------------------------------------N-Q----------REVGEDT------ 84 (261)
T ss_dssp ------------------------------------------------------E-E----------EEBTTTB------
T ss_pred ------------------------------------------------------e-H----------HHhCCCH------
Confidence 0 0 1234321
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecC
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
..| |++||++|..+|++||||||| |+.+...+.+.. ..|.+|++++|+.+ +..+|||+++|..
T Consensus 85 -~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 85 -KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 123 899999999999999999999 998877666554 35899999999988 4568999887753
No 139
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.79 E-value=3.5e-21 Score=182.84 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=104.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC--------CceEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~--------~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
|++++|+|+||||||||+++|+|+++ ++| |.++|. ...+||++|+..- .. .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g--~~---~~------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG--TR---GP------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS--CE---EE-------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc--ce---eh-------------
Confidence 78999999999999999999999998 899 877653 2357888887511 00 00
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc------cccCCCCCCCChHHHHHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA------DDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~------~~~~~~~~~LSGGqrqRv 268 (555)
+..+++.. ....++...+|+|||+++
T Consensus 61 ------------------------------------------------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 61 ------------------------------------------------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp ------------------------------------------------EEECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred ------------------------------------------------hhcccccCCccccccccceEEEcchHHHHHHH
Confidence 11111111 122344557999999988
Q ss_pred -HHHH---HhccCCCEEEEcC--CCCCCCHHHHHHHHHHHcCCCceEE---EEecCH--HHHHhhcceeEEecCCeEeec
Q 008750 269 -SLGK---ILLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMV---IISHDR--AFLDQLCTKIVETEMGVSRTY 337 (555)
Q Consensus 269 -~lAr---aL~~~p~lLlLDE--PTs~LD~~~~~~l~~~l~~~~~tvI---iiSHd~--~~l~~~~dri~~l~~G~~~~~ 337 (555)
+|++ |++.+|++||||| |++.+|....+.|.+++.....+|| .||||. .+++++ ..+++|+++..
T Consensus 93 ~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i----~~~~~~~i~~~ 168 (189)
T 2i3b_A 93 PVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEI----RNRKDVKVFNV 168 (189)
T ss_dssp TTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHH----HTTCCSEEEEC
T ss_pred HHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHH----eecCCcEEEEe
Confidence 4455 6899999999999 9999999999999999987644442 445997 555544 44456665443
Q ss_pred c-CChHHH
Q 008750 338 E-GNYSQY 344 (555)
Q Consensus 338 ~-G~y~~~ 344 (555)
. .|.+..
T Consensus 169 ~~~nr~~~ 176 (189)
T 2i3b_A 169 TKENRNHL 176 (189)
T ss_dssp CSSSGGGH
T ss_pred ChHhHHHH
Confidence 2 455443
No 140
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.79 E-value=5e-19 Score=189.09 Aligned_cols=76 Identities=18% Similarity=0.348 Sum_probs=67.0
Q ss_pred CCCCCCCChHHHHHHHHHHHhc----cCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 254 DRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~----~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
.+++..||||||||++||++|+ .+|++|||||||++||+..+..|.+++++ .+.++|+|||+..++ ..||++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~ 406 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDAL 406 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEE
Confidence 3455679999999999999999 58999999999999999999999998864 367999999998776 579999
Q ss_pred EEec
Q 008750 327 VETE 330 (555)
Q Consensus 327 ~~l~ 330 (555)
+.+.
T Consensus 407 ~~~~ 410 (430)
T 1w1w_A 407 VGVY 410 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 141
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=1.7e-19 Score=207.57 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=108.6
Q ss_pred ccEEEEeEEEEe-----CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHH--------HcCCCCCceEEEEcCCCce
Q 008750 96 SGVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII--------AGQEEPDSGNVIKAKSNMK 162 (555)
Q Consensus 96 ~~i~l~nls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i--------~G~~~p~~G~I~~~g~~~~ 162 (555)
..|.+++...-+ ++..+++||+|++.+|++++|+||||||||||||+| .|.+-|..+..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 457777765444 134689999999999999999999999999999999 66665544321
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++++. .+
T Consensus 702 ~~~~d-------------------------------------------------------------------------~i 708 (934)
T 3thx_A 702 VSIVD-------------------------------------------------------------------------CI 708 (934)
T ss_dssp EECCS-------------------------------------------------------------------------EE
T ss_pred chHHH-------------------------------------------------------------------------HH
Confidence 11110 01
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHh--ccCCCEEEEcCCCCCCCHHHHHHH----HHHHcC-CCceEEEEecC
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEPTNHLDLDTIEWL----EGYLGK-QDVPMVIISHD 315 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL--~~~p~lLlLDEPTs~LD~~~~~~l----~~~l~~-~~~tvIiiSHd 315 (555)
+..+|+. +.....+|+|+.+++.+|++| +.+|+++||||||+|||+.....+ .+.+.+ .|.|+|++||+
T Consensus 709 ~~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~ 784 (934)
T 3thx_A 709 LARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF 784 (934)
T ss_dssp EEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred HHhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 2222322 122346788888888888888 999999999999999999765444 344543 58999999999
Q ss_pred HHHHHhhcceeEEecCCeEe
Q 008750 316 RAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~ 335 (555)
.++. .+||++..+.+|++.
T Consensus 785 ~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 785 HELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp GGGG-GGGGTCTTEEEEEEE
T ss_pred HHHH-HHhcccceeEeeEEE
Confidence 7766 689999888887653
No 142
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.78 E-value=2.8e-19 Score=162.80 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=71.4
Q ss_pred cCCCCCCCChHHHHHHHHH------HHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 253 GDRLVASFSSGWQMRMSLG------KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lA------raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
.++++.+||||||||++|| |||+.+|++|||||||++||+.++.++.+.+.+ .|.|||+||||++ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4688999999999999876 899999999999999999999999999988754 3789999999995 56799
Q ss_pred ceeEEe--cCCeE
Q 008750 324 TKIVET--EMGVS 334 (555)
Q Consensus 324 dri~~l--~~G~~ 334 (555)
|+|++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 143
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.78 E-value=3.2e-20 Score=180.22 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=47.3
Q ss_pred CChHHH-HHHHHHHHhcc-------CCCEEEEcCCCCCCCHH----------------HHHHHHHHHcCCCceEEEEec-
Q 008750 260 FSSGWQ-MRMSLGKILLQ-------DPDLLLLDEPTNHLDLD----------------TIEWLEGYLGKQDVPMVIISH- 314 (555)
Q Consensus 260 LSGGqr-qRv~lAraL~~-------~p~lLlLDEPTs~LD~~----------------~~~~l~~~l~~~~~tvIiiSH- 314 (555)
++++++ +.+..+..++. +|++|+|||||+.||+. ....|.++.++.|.|||+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 344443 33455555544 99999999999999983 122233334456999999999
Q ss_pred ---CHHHHHhhcceeEEecCCe
Q 008750 315 ---DRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 315 ---d~~~l~~~~dri~~l~~G~ 333 (555)
+-..+..+||++++|++|.
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 5556999999999998753
No 144
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=3.9e-20 Score=181.93 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCC-----HHHHHHHHHHH---cCCCceEEEEecCHHHH---------Hhh
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-----LDTIEWLEGYL---GKQDVPMVIISHDRAFL---------DQL 322 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD-----~~~~~~l~~~l---~~~~~tvIiiSHd~~~l---------~~~ 322 (555)
.+-++......+.+-..+|++|+|||||++|| +..++.+.+++ ++.|+|||+|||++..+ ..+
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 34455555555656678999999999999997 55555555544 55799999999999998 678
Q ss_pred c-ceeEEecC
Q 008750 323 C-TKIVETEM 331 (555)
Q Consensus 323 ~-dri~~l~~ 331 (555)
| |+|++|+.
T Consensus 198 ~aD~vi~l~~ 207 (251)
T 2ehv_A 198 IARGVIVLDL 207 (251)
T ss_dssp GCSEEEEEEE
T ss_pred eeeEEEEEee
Confidence 8 99999964
No 145
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.76 E-value=1.9e-19 Score=206.42 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=99.9
Q ss_pred cEEEEeEEEEe-------CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCCceEEEEec
Q 008750 97 GVKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSNMKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y-------~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~~~ig~v~Q 168 (555)
.|.+++...-+ ++..+++||||++.+|++++|+||||||||||||+|+++.-. ..|.. +......++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~~~~i~~~d- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAEEATIGIVD- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSSEEEEECCS-
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccchhhhhhHHH-
Confidence 46777665433 245799999999999999999999999999999999864211 01100 000000111111
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
.++..+|+
T Consensus 718 ------------------------------------------------------------------------~i~~~ig~ 725 (918)
T 3thx_B 718 ------------------------------------------------------------------------GIFTRMGA 725 (918)
T ss_dssp ------------------------------------------------------------------------EEEEEC--
T ss_pred ------------------------------------------------------------------------HHHHhCCh
Confidence 01222222
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHH----HHH-cCCCceEEEEecCHHHHHhhc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE----GYL-GKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~----~~l-~~~~~tvIiiSHd~~~l~~~~ 323 (555)
. +...+.+++||+|++|++.|+++ +.+|++|||||||+|||+.....+. +.+ ++.|.|+|++|||++++ .+|
T Consensus 726 ~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~ 802 (918)
T 3thx_B 726 A-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELE 802 (918)
T ss_dssp ---------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHH
T ss_pred H-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHH
Confidence 1 12234457899999999999999 8999999999999999997655543 333 34689999999998776 456
Q ss_pred ce
Q 008750 324 TK 325 (555)
Q Consensus 324 dr 325 (555)
|+
T Consensus 803 ~~ 804 (918)
T 3thx_B 803 KN 804 (918)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 146
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=4.2e-21 Score=195.62 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=83.7
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC-CCCCceEEEEcCCC-------ceEEEEeccccc
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ-EEPDSGNVIKAKSN-------MKIAFLSQEFEV 172 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~-~~p~~G~I~~~g~~-------~~ig~v~Q~~~~ 172 (555)
.||+++|+++.++++++|+| +|||+||+|||||+++|+|. ..|++| |.++|.+ ..+++++|....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 58899999999999999999 99999999999999999998 889998 6554322 236888888766
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
...+|++|+...... .. . .+. ...+...+. ..
T Consensus 75 ~~~ltv~Dt~g~~~~--~~-------------~----~e~-------------------~~~l~~~l~----------~~ 106 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDA--IN-------------C----RDC-------------------FKTIISYID----------EQ 106 (301)
T ss_dssp CEEEEEEEEC-------------------------------------------------CTTHHHHHH----------HH
T ss_pred ccCcchhhhhhhhhh--cC-------------c----HHH-------------------HHHHHHHHH----------HH
Confidence 666777665422100 00 0 000 000000000 11
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCC-CCHHHHHHHHHHHcCCCceEEEEecCHH
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-LDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~-LD~~~~~~l~~~l~~~~~tvIiiSHd~~ 317 (555)
.++++.++|||||||+.+|||++ +|++||||++ ||+...+.+..+-.+.+.++|+.+||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 23445689999999999999986 9999999986 9998865544433335788999999974
No 147
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.76 E-value=8.3e-18 Score=176.21 Aligned_cols=75 Identities=27% Similarity=0.426 Sum_probs=66.7
Q ss_pred CCCCCCChHHHHHH------HHHHHhccC-CCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEEecCHHHHHhhcce
Q 008750 255 RLVASFSSGWQMRM------SLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 255 ~~~~~LSGGqrqRv------~lAraL~~~-p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIiiSHd~~~l~~~~dr 325 (555)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+.....+.+.|.+. +.+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567999999 9999999999999999999999988653 469999999987 5689999
Q ss_pred eEEec
Q 008750 326 IVETE 330 (555)
Q Consensus 326 i~~l~ 330 (555)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 148
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.72 E-value=1.1e-20 Score=181.92 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=104.0
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC--cCccHHHHHHHhhHHHHHHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLE 197 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~ 197 (555)
.++|+++||+|+||||||||+++|+|++.| .++|++|++.+. ...++.++....+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~---------- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYD---------- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT----------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCC----------
Confidence 578999999999999999999999998865 478999998664 34577665422110
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHH----HHHHHHHHH
Q 008750 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW----QMRMSLGKI 273 (555)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq----rqRv~lAra 273 (555)
. +......++.++++.+++.. ..++++..+|+|+ +||+++|++
T Consensus 61 ----------~----------------------~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~ 107 (211)
T 3asz_A 61 ----------H----------------------PDAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPV 107 (211)
T ss_dssp ----------S----------------------GGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSE
T ss_pred ----------C----------------------hhhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcE
Confidence 0 00011223444455555542 3456778999996 478899999
Q ss_pred hccCCCEEEEcCCCCC-------CCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 274 LLQDPDLLLLDEPTNH-------LDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~-------LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
++.+|.++++||||++ ||+.....+.+.+. +.|.|+++++|+..
T Consensus 108 li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 108 VILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999 89887777766654 35899999999853
No 149
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.71 E-value=7.4e-18 Score=163.41 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=105.3
Q ss_pred CceeeeeeeE-EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhH
Q 008750 109 GVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (555)
Q Consensus 109 ~~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~ 187 (555)
+.+.|+++.+ .|++|++++|+|+||||||||++.|++...+..|.|.+. ..+. +..+ +...
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~---------~~~~------~~~~-~~~~-- 69 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV---------TTEE------SRDS-IIRQ-- 69 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE---------ESSS------CHHH-HHHH--
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE---------Eccc------CHHH-HHHH--
Confidence 3457888887 899999999999999999999999999887776666543 2211 1111 1000
Q ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHH
Q 008750 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (555)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (555)
.. .+. . +.. ....... ..++.+...++ . .. .....|.++.++
T Consensus 70 --------~~----~~~--~-~~~-----------------~~~~~~~-~~~~~~~~~~~-~-~~---~~~~~~~~~~~~ 111 (235)
T 2w0m_A 70 --------AK----QFN--W-DFE-----------------EYIEKKL-IIIDALMKEKE-D-QW---SLVNLTPEELVN 111 (235)
T ss_dssp --------HH----HTT--C-CCG-----------------GGBTTTE-EEEECCC-----C-TT---BCSSCCHHHHHH
T ss_pred --------HH----Hhc--c-hHH-----------------HHhhCCE-EEEeccccccC-c-ee---eecCCCHHHHHH
Confidence 00 000 0 000 0000000 00000000001 0 00 112459999999
Q ss_pred HHHHHHhccCCC--EEEEcCCCCCC--CHHHHHHHHHHH----cCCCceEEEEecCH--------HHHHhhcceeEEecC
Q 008750 268 MSLGKILLQDPD--LLLLDEPTNHL--DLDTIEWLEGYL----GKQDVPMVIISHDR--------AFLDQLCTKIVETEM 331 (555)
Q Consensus 268 v~lAraL~~~p~--lLlLDEPTs~L--D~~~~~~l~~~l----~~~~~tvIiiSHd~--------~~l~~~~dri~~l~~ 331 (555)
...+.+...+|+ +||+||||+.+ |+.....+.+.| ++.+.|||++||+. ..+.++||+|++|+.
T Consensus 112 ~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 112 KVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp HHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888888888999 99999999888 986666555544 45699999999999 458899999999986
Q ss_pred Ce
Q 008750 332 GV 333 (555)
Q Consensus 332 G~ 333 (555)
..
T Consensus 192 ~~ 193 (235)
T 2w0m_A 192 MI 193 (235)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 150
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.69 E-value=3.9e-18 Score=173.62 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------------eEEEEecccccCcCccHHHHHHHh
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFEVSMSRTVREEFMSA 185 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------------~ig~v~Q~~~~~~~~tv~e~~~~~ 185 (555)
+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+. .++|++|++..++..++.+++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999987542 488999998877777787776421
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHH
Q 008750 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (555)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 265 (555)
.. . ..+ ..+++..|..+ .....++..++
T Consensus 181 ~~----------------~------------------------~~d--------~~llDt~G~~~----~~~~~~~eLs~ 208 (304)
T 1rj9_A 181 KA----------------R------------------------GYD--------LLFVDTAGRLH----TKHNLMEELKK 208 (304)
T ss_dssp HH----------------H------------------------TCS--------EEEECCCCCCT----TCHHHHHHHHH
T ss_pred Hh----------------C------------------------CCC--------EEEecCCCCCC----chHHHHHHHHH
Confidence 00 0 000 01234445421 11223455568
Q ss_pred HHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHH
Q 008750 266 MRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (555)
Q Consensus 266 qRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~ 317 (555)
||++|||||+.+|+ +|.|| |+++.+. ...+..+.+..+.|+|++||+..
T Consensus 209 ~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcCCcEEEEECCcc
Confidence 99999999999999 77778 6666543 33444444455899999999843
No 151
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.69 E-value=6.2e-18 Score=192.26 Aligned_cols=160 Identities=13% Similarity=0.050 Sum_probs=101.5
Q ss_pred ccEEEEeEEEEe-----CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCCceEEEEecc
Q 008750 96 SGVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSNMKIAFLSQE 169 (555)
Q Consensus 96 ~~i~l~nls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~~~ig~v~Q~ 169 (555)
+.|.+++...-. ++..+++|++|+ .+|++++|+||||||||||||+|+|+..+ ..|... ......+++++|
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v-pa~~~~i~~~~~- 652 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV-PAQKVEIGPIDR- 652 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB-SSSEEEECCCCE-
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc-chhcccceeHHH-
Confidence 457777753222 345799999999 99999999999999999999999997432 233211 111123455444
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
++...++.+++.
T Consensus 653 --i~~~~~~~d~l~------------------------------------------------------------------ 664 (800)
T 1wb9_A 653 --IFTRVGAADDLA------------------------------------------------------------------ 664 (800)
T ss_dssp --EEEEEC------------------------------------------------------------------------
T ss_pred --HHhhCCHHHHHH------------------------------------------------------------------
Confidence 222333333321
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHH----HHHHHHcC-CCceEEEEecCHHHHHhhcc
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGK-QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~----~l~~~l~~-~~~tvIiiSHd~~~l~~~~d 324 (555)
...+++|+++++ ++.+..++.+|+++||||||+|+|+.... .+.+.+.+ .|.++|++|||.++. .+||
T Consensus 665 -----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d 737 (800)
T 1wb9_A 665 -----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPE 737 (800)
T ss_dssp ----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred -----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhh
Confidence 112357777765 44445568999999999998888874332 34444544 589999999999876 4888
Q ss_pred eeEEecCCe
Q 008750 325 KIVETEMGV 333 (555)
Q Consensus 325 ri~~l~~G~ 333 (555)
++..+.++.
T Consensus 738 ~~~~v~n~~ 746 (800)
T 1wb9_A 738 KMEGVANVH 746 (800)
T ss_dssp HSTTEEEEE
T ss_pred hhhceEEEE
Confidence 765554443
No 152
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.68 E-value=3.9e-19 Score=197.51 Aligned_cols=152 Identities=20% Similarity=0.321 Sum_probs=91.7
Q ss_pred ccEEEEeEEEEeCC--ceeeeee----------eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCC--
Q 008750 96 SGVKLENISKSYKG--VTVLKDV----------TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN-- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~v----------sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~-- 160 (555)
+.+.++||++.|+. +++|+.+ +|+++. +||||+||||||||+++|+|++.| ++|.|.++|.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 35889999999965 3455555 366654 999999999999999999999988 79999887643
Q ss_pred -----------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Q 008750 161 -----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (555)
Q Consensus 161 -----------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
..++|++|++.+++..||.+|+..+... +.
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~--------------~~------------------------- 126 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA--------------IA------------------------- 126 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH--------------HH-------------------------
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH--------------hc-------------------------
Confidence 2589999999888888888887432100 00
Q ss_pred cCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCC------CCCCCHHHHHHHHHHHc
Q 008750 230 VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP------TNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEP------Ts~LD~~~~~~l~~~l~ 303 (555)
....++. ++++.++.+....|+++|+||| |++||+.....+.+++.
T Consensus 127 -------------~~~~~~s---------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~ 178 (608)
T 3szr_A 127 -------------GEGMGIS---------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 178 (608)
T ss_dssp -------------CSSSCCC---------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHH
T ss_pred -------------CCccccc---------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHH
Confidence 0001111 1223334444568999999999 99999988877776654
Q ss_pred C-----CCceEEEEecCHH
Q 008750 304 K-----QDVPMVIISHDRA 317 (555)
Q Consensus 304 ~-----~~~tvIiiSHd~~ 317 (555)
+ .+.++++++||++
T Consensus 179 ~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 179 KYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHTTSSSCCEEEEEESSSC
T ss_pred HHHhcCCCCceEEEeccch
Confidence 3 3788999999965
No 153
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.68 E-value=1.6e-16 Score=148.25 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=79.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcc----CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcce
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~----~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dr 325 (555)
...+.+..||||||||++||++|+. +|+++||||||++||+.+...+.++|++ .+.++|+|||+...+ ..||+
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~ 135 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADK 135 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCE
Confidence 3456788999999999999999974 4699999999999999999999998864 467999999998776 68999
Q ss_pred eEEe--cCCeEeeccCChHHHHH
Q 008750 326 IVET--EMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 326 i~~l--~~G~~~~~~G~y~~~~~ 346 (555)
|+.+ ++|...++..++.++..
T Consensus 136 i~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 136 IIGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEEecCCEEEEEEEEcHHHHH
Confidence 9855 58887777777776554
No 154
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.67 E-value=1.2e-17 Score=173.48 Aligned_cols=139 Identities=16% Similarity=0.161 Sum_probs=99.3
Q ss_pred EeEEEEeC--CceeeeeeeE-------EEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCCCce------EE
Q 008750 101 ENISKSYK--GVTVLKDVTW-------EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMK------IA 164 (555)
Q Consensus 101 ~nls~~y~--~~~vL~~vsl-------~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~g~~~~------ig 164 (555)
.+++++|- ..+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.+.. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 46666662 2346677766 67889999999999999999999999999987 566653322110 01
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
+++|..
T Consensus 172 ~v~q~~-------------------------------------------------------------------------- 177 (356)
T 3jvv_A 172 LVNQRE-------------------------------------------------------------------------- 177 (356)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 111110
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcc
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~d 324 (555)
.+. ..++-.+ +||+||..+|++||+|||| |.++.+.+.+.. ..|.|||+++|+.+.+ ..||
T Consensus 178 -~~~---------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~d 238 (356)
T 3jvv_A 178 -VHR---------DTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTID 238 (356)
T ss_dssp -BTT---------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHH
T ss_pred -ecc---------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHH
Confidence 000 1122222 9999999999999999999 888877766654 3589999999999998 6799
Q ss_pred eeEEecCC
Q 008750 325 KIVETEMG 332 (555)
Q Consensus 325 ri~~l~~G 332 (555)
|++.|..|
T Consensus 239 Rli~l~~~ 246 (356)
T 3jvv_A 239 RVVDVFPA 246 (356)
T ss_dssp HHHHTSCH
T ss_pred HHhhhcCc
Confidence 99887443
No 155
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=3.3e-18 Score=181.10 Aligned_cols=161 Identities=15% Similarity=0.135 Sum_probs=97.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEcCC-C---ceEEEEec
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKAKS-N---MKIAFLSQ 168 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G--~I~~~g~-~---~~ig~v~Q 168 (555)
.++|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...|+.| .+.+... . ..+++++|
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 35689999999999889999999998 99999999999999999999876544 2211111 1 24788888
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
+..+...+||+|++..... .. . . ..+ ..+...+.
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~--~~-------------~----~--------------------~~~---~~i~~~i~---- 116 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDA--VD-------------N----S--------------------NCW---QPVIDYID---- 116 (418)
T ss_dssp ----CEEEEEEECC--------------------------------------------------C---HHHHHHHH----
T ss_pred cCCcccceeeeechhhhhh--cc-------------c----h--------------------hhH---HHHHHHHH----
Confidence 8777667788776532110 00 0 0 000 00001111
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCC---EEEEcCCC-CCCCHHHHHHHHHHHcCCCceEEEEecCHHH
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPT-NHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~---lLlLDEPT-s~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~ 318 (555)
..++.+++||++|||+++.+|+ +|++|||| ++||+....++.. |.. +.++|+|.|..+.
T Consensus 117 ---------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~-L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 117 ---------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR-LHE-KVNIIPLIAKADT 179 (418)
T ss_dssp ---------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHH-HTT-TSEEEEEEESTTS
T ss_pred ---------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHH-Hhc-cCcEEEEEEcccC
Confidence 0244566778999999999999 99999999 6999988766654 443 7888888886543
No 156
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=1.2e-18 Score=166.57 Aligned_cols=180 Identities=11% Similarity=0.096 Sum_probs=95.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCCC---ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN---MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~g~~---~~ig~v~Q 168 (555)
+|+++|++|.|+ .+++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+.- ..+-+ ..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l-~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL-VD 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE-EE
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE-EE
Confidence 489999999997 467887 889999999999999999999999999998 7888876532100 00111 11
Q ss_pred ccccCc-C--ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 169 EFEVSM-S--RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 169 ~~~~~~-~--~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
.+.... . ....+.+.. .+......... .+..-.+... .......+..+..++..
T Consensus 79 t~G~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~v~d~------------~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQR----------ALGEYLEKRQS-LQGLVVLMDI------------RHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp CCCCC------CCHHHHHH----------HHHHHHHHCTT-EEEEEEEEET------------TSCCCHHHHHHHHHHHH
T ss_pred CcCCcccccCHHHHHHHHH----------HHHHHHHhhhc-ccEEEEEEEC------------CCCCchhHHHHHHHHHH
Confidence 111100 0 000000000 00000000000 0000000000 00001122344555666
Q ss_pred cCCCccccCCCCCCCChHHHHH-HHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 246 LGFTADDGDRLVASFSSGWQMR-MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqR-v~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
.+++......++..+|+||+|| +.++++++.+|.++++|||||++|...+..+.+.|.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 7776444455677899999999 899999999999999999999999998888887764
No 157
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.65 E-value=2.1e-16 Score=158.83 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=91.0
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC----CceEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~----~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
|++|++++|+|+||||||||++.|++.+. .|.+.+ |. ...+.|+..+.. .. .+.. +
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~------~~-~~~~----------r 86 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP------PT-AIHH----------R 86 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC------HH-HHHH----------H
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC------HH-HHHH----------H
Confidence 78999999999999999999999998654 455432 22 124666654421 11 1100 0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
... +. ... .......+++.+++.. ..++++..||+||.+++ ++++
T Consensus 87 ~~~----~g-------------------------~~~--~~~~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~ 131 (279)
T 1nlf_A 87 LHA----LG-------------------------AHL--SAEERQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAA 131 (279)
T ss_dssp HHH----HH-------------------------TTS--CHHHHHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHH
T ss_pred HHH----HH-------------------------hhc--ChhhhhhccCceEEee-cCCCCcccCCHHHHHHH---HHhc
Confidence 000 00 000 0112334455666543 34677889999997765 6788
Q ss_pred cCCCEEEEcCCCC--CCCHHH---HHHHHHH----HcCCCceEEEEecCHHHHH
Q 008750 276 QDPDLLLLDEPTN--HLDLDT---IEWLEGY----LGKQDVPMVIISHDRAFLD 320 (555)
Q Consensus 276 ~~p~lLlLDEPTs--~LD~~~---~~~l~~~----l~~~~~tvIiiSHd~~~l~ 320 (555)
.+|+++|+||||+ ++|... ...+.+. .++.|+|||+|+|+.....
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 8999999999999 999732 2333333 3456999999999987664
No 158
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.63 E-value=1.1e-17 Score=173.78 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=90.6
Q ss_pred eeeeee-eEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCc----eE-EEEcCCCc----eEEEEecccccCcCccH
Q 008750 111 TVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDS----GN-VIKAKSNM----KIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 111 ~vL~~v-sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~----G~-I~~~g~~~----~ig~v~Q~~~~~~~~tv 178 (555)
+.|+.+ ++.|++|++++|+|+||||||||++.|++.. +|++ |. |++++... ++++++|.+.++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~----- 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLD----- 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCC-----
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCC-----
Confidence 456655 6899999999999999999999999999998 6776 56 55554321 111111111110
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008750 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (555)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (555)
. ..+++.+-+. +.
T Consensus 193 --------------------------------------------------------~----~~v~~ni~~~-----~~-- 205 (349)
T 1pzn_A 193 --------------------------------------------------------P----DEVLKHIYVA-----RA-- 205 (349)
T ss_dssp --------------------------------------------------------H----HHHGGGEEEE-----EC--
T ss_pred --------------------------------------------------------H----HHHhhCEEEE-----ec--
Confidence 0 0111211110 00
Q ss_pred CCChHHHHHHHHHHHhc-------cCCCEEEEcCCCCCCCHHH------------HHHHHHHH----cCCCceEEEEecC
Q 008750 259 SFSSGWQMRMSLGKILL-------QDPDLLLLDEPTNHLDLDT------------IEWLEGYL----GKQDVPMVIISHD 315 (555)
Q Consensus 259 ~LSGGqrqRv~lAraL~-------~~p~lLlLDEPTs~LD~~~------------~~~l~~~l----~~~~~tvIiiSHd 315 (555)
.-|++++|++.++++++ .+|++||+||||++||+.. ...+...| ++.+.|||+++|+
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 12678888999998888 6899999999999999852 23333333 4579999999999
Q ss_pred HHHHHhhcceeEEecCCeE
Q 008750 316 RAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~ 334 (555)
.......++.+.....|.+
T Consensus 286 ~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 286 QARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp C---------------CCC
T ss_pred ccccccccCCccccCCcce
Confidence 8766544444455555554
No 159
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.58 E-value=2.5e-15 Score=144.55 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=56.6
Q ss_pred CCChHH--HHHHHHHHHhccC-CCEEEEcCCCCCCCHHH--------HHH----HHHHHcCCCceEEEEecCHH------
Q 008750 259 SFSSGW--QMRMSLGKILLQD-PDLLLLDEPTNHLDLDT--------IEW----LEGYLGKQDVPMVIISHDRA------ 317 (555)
Q Consensus 259 ~LSGGq--rqRv~lAraL~~~-p~lLlLDEPTs~LD~~~--------~~~----l~~~l~~~~~tvIiiSHd~~------ 317 (555)
.+|+++ +++++.+++++.+ |+++|+||||+.+|... ... |.++.++.+.|+|+++|...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 445554 5688888999986 99999999999999732 122 33334456899999999875
Q ss_pred -------HHHhhcceeEEecCC
Q 008750 318 -------FLDQLCTKIVETEMG 332 (555)
Q Consensus 318 -------~l~~~~dri~~l~~G 332 (555)
.+.++||+|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 678899999999754
No 160
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.56 E-value=4.7e-16 Score=162.82 Aligned_cols=124 Identities=22% Similarity=0.276 Sum_probs=92.5
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCCCc------eEEEEecccccCcCccHHHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~g~~~------~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
.+|++++ +++|++++|+|+||||||||+++|+|+++|+ +|+|.+.+.+. .++|++|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~-------------- 189 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 189 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee--------------
Confidence 3567666 7899999999999999999999999999998 89997654322 11222221
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChH
Q 008750 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (555)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (555)
.+|+. +..|
T Consensus 190 -------------------------------------------------------------~~g~~-------~~~~--- 198 (372)
T 2ewv_A 190 -------------------------------------------------------------EVGED-------TKSF--- 198 (372)
T ss_dssp -------------------------------------------------------------EBTTT-------BSCS---
T ss_pred -------------------------------------------------------------ecCCC-------HHHH---
Confidence 12221 2345
Q ss_pred HHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEe
Q 008750 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 264 qrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
+.+|+++|..+|++||+|||+ |.+....+.+.. ..|.++|+++|+.+ +..+|||++.|
T Consensus 199 ---~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ---ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp ---HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred ---HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 469999999999999999999 887766555544 45889999999966 56778887655
No 161
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.56 E-value=2.7e-16 Score=163.99 Aligned_cols=144 Identities=12% Similarity=0.122 Sum_probs=105.7
Q ss_pred EEEeEEEE---eCC--ceee---------eeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---
Q 008750 99 KLENISKS---YKG--VTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--- 161 (555)
Q Consensus 99 ~l~nls~~---y~~--~~vL---------~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--- 161 (555)
++++++|+ |+. .++| +++||.|++|++++|+|+||||||||+++|+|+++|++|.|.+++...
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 67888888 753 3455 999999999999999999999999999999999999999999986421
Q ss_pred -----eEEEEe-cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 162 -----KIAFLS-QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 162 -----~ig~v~-Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
.++|++ |+..
T Consensus 217 ~~~~~~v~~v~~q~~~---------------------------------------------------------------- 232 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK---------------------------------------------------------------- 232 (361)
T ss_dssp TTCSSEEEEECC--------------------------------------------------------------------
T ss_pred cccCCEEEEeecCccc----------------------------------------------------------------
Confidence 233333 2110
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecC
Q 008750 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (555)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd 315 (555)
..++++..++..|+.++..+|+.+++|||+.. ...+.+ +.+..-..|+|.++|+
T Consensus 233 ----------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~~l-~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 233 ----------------------EEENAPVTAATLLRSCLRMKPTRILLAELRGG---EAYDFI-NVAASGHGGSITSCHA 286 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCST---HHHHHH-HHHHTTCCSCEEEEEC
T ss_pred ----------------------cccccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHHHH-HHHhcCCCeEEEEECC
Confidence 01234456888999999999999999999962 444433 3333334578999999
Q ss_pred HHHHHhhcceeEEecCCe
Q 008750 316 RAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~ 333 (555)
.+ +...++|++.+..+.
T Consensus 287 ~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS-CELTFERLALMVLQN 303 (361)
T ss_dssp SS-HHHHHHHHHHHHTTS
T ss_pred CC-HHHHHHHHHHHHhcc
Confidence 76 667899999887663
No 162
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.55 E-value=4.5e-16 Score=151.04 Aligned_cols=134 Identities=12% Similarity=0.163 Sum_probs=87.2
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCCCc------eEEEEecccccCcCccHHHHHHHhhHH
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFMSAFKE 188 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~g~~~------~ig~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (555)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+. .++|++|++..+..+++...|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f------ 83 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAF------ 83 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCE------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHH------
Confidence 345789999999999999999999999999986 688888765432 367788765432211110000
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHH
Q 008750 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (555)
++.+.+. ..+.|-.++.
T Consensus 84 ------------------------------------------------------~E~~~~~--------~~~yg~~~~~- 100 (219)
T 1s96_A 84 ------------------------------------------------------LEHAEVF--------GNYYGTSREA- 100 (219)
T ss_dssp ------------------------------------------------------EEEEEET--------TEEEEEEHHH-
T ss_pred ------------------------------------------------------HHHHHHH--------hccCCCCHHH-
Confidence 0000000 0011111222
Q ss_pred HHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 269 ~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
+..++..++++||| ||+.+...+.+.+. .+.||+++||+++.+.+ |+ +..|
T Consensus 101 --v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~---Rl--~~rG 151 (219)
T 1s96_A 101 --IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR---RL--RGRG 151 (219)
T ss_dssp --HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH---HH--HTTS
T ss_pred --HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH---HH--HHcC
Confidence 33445568999999 99999999999887 58999999999999875 43 5555
No 163
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.54 E-value=1.5e-18 Score=181.43 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=98.3
Q ss_pred eeeeeeEEEEC--CCEEEEEcCCCccHHHHHHHHHcCCCCCc----eEEEEcCCCceEEEEecccccCcCccHHHHHHHh
Q 008750 112 VLKDVTWEVKK--GEKVGLVGVNGAGKTTQLRIIAGQEEPDS----GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (555)
Q Consensus 112 vL~~vsl~i~~--Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~----G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~ 185 (555)
+.+.|+++|.+ |++++|+|+||||||||+++|+|+++|++ |+|.+++... ..+..+ ..... .++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----~~~~~~-~~~~~-~~I~~~ 229 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----GDEQAM-QYSDY-PQMALG 229 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----SCTTSS-CTTTH-HHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----CCcccC-ChhHH-HHHHHH
Confidence 35679999999 99999999999999999999999999998 7766531100 000100 11112 222211
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHH
Q 008750 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (555)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 265 (555)
...... +. ..+.+-+..++. ...+..+..+|+|++
T Consensus 230 ~q~~~~-------------------------------~~------------~t~~~nl~~~~~--~~~~~~~~~~~~~~~ 264 (365)
T 1lw7_A 230 HQRYID-------------------------------YA------------VRHSHKIAFIDT--DFITTQAFCIQYEGK 264 (365)
T ss_dssp HHHHHH-------------------------------HH------------HHHCSSEEEESS--CHHHHHHHHHHHHSC
T ss_pred HHHHHH-------------------------------HH------------HhccCCEEEEeC--CchHHHHHHHHHcCC
Confidence 110000 00 000000000110 111122335667778
Q ss_pred HHHHHHHHhc-cCCCEEEEcC---CC------CCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 266 MRMSLGKILL-QDPDLLLLDE---PT------NHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 266 qRv~lAraL~-~~p~lLlLDE---PT------s~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
++..+++++. .+|+++|||| |+ .++|+..+..+.+.| ++.+.++|+++|. ....++|+++..++
T Consensus 265 ~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 265 AHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp CCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 8888888874 6999999999 65 589988777777766 3458899999986 45666777765553
No 164
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=7.3e-16 Score=162.66 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=106.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCE--EEEEcCCCccHHHHHHHHHcCCCCCceEEEEc---C-CCceEEEEecccc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---K-SNMKIAFLSQEFE 171 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~---g-~~~~ig~v~Q~~~ 171 (555)
+++++ ++.|++.+ |++|||+|++|++ +||||+||||||||+++|+|+.- .|..... + ....++|++|++.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 66777 88998888 9999999999999 99999999999999999999851 2211110 0 0125899999988
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc-CCCc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GFTA 250 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gl~~ 250 (555)
+++.+||.+++..+... .....+..+. ..+...+..+|... ++..
T Consensus 93 l~~~ltv~D~~~~g~~~--~~~~~~~~i~--------------------------------~~i~~q~~~~L~e~~~i~r 138 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQI--NKEDSYKPIV--------------------------------EFIDAQFEAYLQEELKIRR 138 (427)
T ss_dssp CEEEEEEEEEECCCC-C--CHHHHSHHHH--------------------------------HHHHHHHHHHHHHC--CCC
T ss_pred cccccchhhhhhhhhcc--ccchhhhHHH--------------------------------HHHHHHHHHHHHHHHhhhh
Confidence 77777887775332110 0000000000 01122233333332 2210
Q ss_pred ---cccCCCC-----------CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH----HcCCCceEEEE
Q 008750 251 ---DDGDRLV-----------ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVII 312 (555)
Q Consensus 251 ---~~~~~~~-----------~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~----l~~~~~tvIii 312 (555)
...+..+ ..|+-.+ +.|+++|..+++|+++||||..|.+.....+.+. |...|.+|+.+
T Consensus 139 ~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 139 VLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQF 215 (427)
T ss_dssp CCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCC
T ss_pred hhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEec
Confidence 0011110 2456555 7999999999999999999999998776665544 55679999999
Q ss_pred ecCH
Q 008750 313 SHDR 316 (555)
Q Consensus 313 SHd~ 316 (555)
|.|-
T Consensus 216 s~~d 219 (427)
T 2qag_B 216 PTDD 219 (427)
T ss_dssp C---
T ss_pred CCCc
Confidence 9763
No 165
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.51 E-value=1.2e-16 Score=147.15 Aligned_cols=83 Identities=22% Similarity=0.086 Sum_probs=71.3
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCce-----EEEEecccccC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-----IAFLSQEFEVS 173 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~-----ig~v~Q~~~~~ 173 (555)
..+|+++.|+++.++++|||+|++|++++|+|+||||||||+|+|+|++ |++|+|.++|.+.. ..+++|++.++
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 3356778888778999999999999999999999999999999999999 99999998876541 12689998887
Q ss_pred cCccHHHHHH
Q 008750 174 MSRTVREEFM 183 (555)
Q Consensus 174 ~~~tv~e~~~ 183 (555)
.+|+.+|+.
T Consensus 88 -~ltv~e~l~ 96 (158)
T 1htw_A 88 -RLADPEELE 96 (158)
T ss_dssp -TCSCTTHHH
T ss_pred -cCCcHHHHH
Confidence 889988874
No 166
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.51 E-value=1.5e-16 Score=150.12 Aligned_cols=154 Identities=15% Similarity=0.052 Sum_probs=91.3
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEecccccCcCccHHHHHHHhhHHHH
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (555)
.|++|++++|+|+||||||||+++|+|. |+.|.|.+++.+. .++|++|+.. ...++.+++.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~--- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG--- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH---
Confidence 4779999999999999999999999998 7889999886432 1345555432 23355554422100
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc-ccCCCCCCCChHHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD-DGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-~~~~~~~~LSGGqrqRv~ 269 (555)
. .... +... .++.++..+++... ..+.++..+|+|++|+++
T Consensus 78 --------~--~~~~-------------------------~~~~---~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 78 --------R--YAKE-------------------------GYFV---ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEA 119 (191)
T ss_dssp --------H--HHHT-------------------------SCEE---EECSCCCTTTTHHHHTTCSCEEEEEEECCHHHH
T ss_pred --------H--Hhcc-------------------------CCeE---EEeccCcHHHHHHHHhcCCCeEEEEecCCHHHH
Confidence 0 0000 0000 00001111122100 003345679999999999
Q ss_pred HHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCHHHHHhhccee
Q 008750 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD--VPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 270 lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~--~tvIiiSHd~~~l~~~~dri 326 (555)
++|++..+|+++ +|+...+.+.+.+.... ..+++.|++. .++.++++|
T Consensus 120 ~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 120 IERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp HHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTC-CTTTTTTTT
T ss_pred HHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCC-CHHHHHHHH
Confidence 999999999976 68888888888775431 1344445432 233445554
No 167
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.9e-17 Score=177.52 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=91.7
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-E-EEECCce-eeeEEEecCCc
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-E-VLLGEHN-VLPNYFEQNQA 498 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G-~-v~~~~~~-~~~~y~~Q~~~ 498 (555)
.+.++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| . |.+++.. -.++|++|+..
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 34578888888874 68999999999999999999999999999999999999 8 9887632 13578888752
Q ss_pred c-CCCCCCCHHHHHHhhcc---c-CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 499 E-ALDLDKTVLETVAEAAE---D-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 499 ~-~l~~~~tv~e~l~~~~~---~-~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
. .+....|+.+++ .... . .....+..++..+|+.. ..+ +..|||||||||+||
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~-~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLER-INE--NKDLYLECISQLGQV 247 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSS-GGG--CHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCc-ccc--hhhhhHHHHHHHHHH
Confidence 1 123445777776 2211 0 01123455788888853 233 889999999999985
No 168
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.45 E-value=2.1e-13 Score=133.08 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.2
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHc--CCCC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEP 149 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p 149 (555)
-|++|++++|+|+||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 488999999999999999999999999 5555
No 169
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.45 E-value=2.5e-16 Score=159.78 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=77.9
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCC
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~ 503 (555)
.|+++||+|.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|.|. .|++|++ .++.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~--~lf~ 166 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKS--HFWL 166 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTS--GGGG
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------EEecCcc--cccc
Confidence 378899999997 67999999999999999999999999999999999998 78874 2456764 2322
Q ss_pred CCCHHH-HHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhc
Q 008750 504 DKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVN 551 (555)
Q Consensus 504 ~~tv~e-~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~R 551 (555)
.|+.+ ++... ++.. ..+...+..+ ++ +.++ +..||||||||
T Consensus 167 -~ti~~~ni~~~-~~~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR 208 (305)
T 2v9p_A 167 -ASLADTRAALV-DDAT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK 208 (305)
T ss_dssp -GGGTTCSCEEE-EEEC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC
T ss_pred -ccHHHHhhccC-cccc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH
Confidence 35554 44332 1222 1344555554 32 2333 78999999999
No 170
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.45 E-value=5.1e-16 Score=158.59 Aligned_cols=118 Identities=11% Similarity=-0.019 Sum_probs=89.3
Q ss_pred eEEEEeeeEEcCCccceeceEEE-----------------------EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLT-----------------------IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~-----------------------i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~ 480 (555)
.|++++|++.|. ++++.++|. +.+|++|+|+||||||||||+++|+|+++|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 478899999994 566666654 8999999999999999999999999999997663
Q ss_pred EEECCceeeeEEEecCCccCCCCCCCHHHHHHhhc----c-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 481 VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA----E-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 481 v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~----~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
-.++|++|+. .+.+. |+.+++.... + ......+...|..++ . ...+.++..|||||+|||++|
T Consensus 121 -------~~v~~v~qd~--~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a 188 (312)
T 3aez_A 121 -------PRVDLVTTDG--FLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGA 188 (312)
T ss_dssp -------CCEEEEEGGG--GBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEE
T ss_pred -------CeEEEEecCc--cCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhH
Confidence 2367999985 24455 8998875321 1 223345667777776 3 234577889999999999864
No 171
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=5.6e-14 Score=145.39 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=83.7
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEc-CC------CceEEEEecccccCcCccHHHHHH
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKA-KS------NMKIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~-g~------~~~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
-++++++.+ +|++++|+|+||||||||+++|+|+.. |+.|+|.+. |. ...+++++|+..++...+++++.+
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 355666643 899999999999999999999999999 999999875 42 236899999987777777776311
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChH
Q 008750 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (555)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (555)
.. +...++...+.++++.+|+. ...++.+.+|| |
T Consensus 284 ~~--------------------------------------------l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G 317 (358)
T 2rcn_A 284 WH--------------------------------------------LEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-G 317 (358)
T ss_dssp CC--------------------------------------------CCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-T
T ss_pred cC--------------------------------------------CCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-H
Confidence 00 11112334566778888885 46788899999 9
Q ss_pred HHHHHHHHHHh
Q 008750 264 WQMRMSLGKIL 274 (555)
Q Consensus 264 qrqRv~lAraL 274 (555)
|+||++||+++
T Consensus 318 ~~~r~ala~gl 328 (358)
T 2rcn_A 318 CAIREAVENGA 328 (358)
T ss_dssp CHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 99999999886
No 172
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.42 E-value=6.8e-17 Score=152.56 Aligned_cols=163 Identities=12% Similarity=0.049 Sum_probs=97.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (555)
|++++|+|+||||||||+++|++ |..|.+.+++.. ..+++++|.....+..++.+++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTV----------- 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHH-----------
Confidence 67899999999999999999997 678988887532 124556654432233344444321100
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCC--ChHHHHHHHHHH----
Q 008750 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF--SSGWQMRMSLGK---- 272 (555)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L--SGGqrqRv~lAr---- 272 (555)
..... +. ..+++.+.. ... .+.+..+ |+|++|++.++.
T Consensus 68 --~~~~~-------------------------~~-------~~ild~~~~-~~~-~~~~~~~~~s~g~~~~~~~i~L~~~ 111 (189)
T 2bdt_A 68 --NFLLA-------------------------QN-------DVVLDYIAF-PDE-AEALAQTVQAKVDDVEIRFIILWTN 111 (189)
T ss_dssp --HHHHT-------------------------TC-------EEEEESCCC-HHH-HHHHHHHHHHHCSSEEEEEEEEECC
T ss_pred --HHHhc-------------------------CC-------cEEEeeccC-HHH-HHHHHHHHHhcccCCCeEEEEEeCC
Confidence 00000 00 001111110 000 0111234 888888887777
Q ss_pred --HhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecC-HHHHHhhcceeEEecCCeEeeccCChH
Q 008750 273 --ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD-RAFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 273 --aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd-~~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
+|+.+|....+|+ +||+..+.. ++.+ ...+.++|.+||. ++.+.++||+|+ ++|++ .+.|+.+
T Consensus 112 ~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~-~~~~~~~ 180 (189)
T 2bdt_A 112 REELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRF-IFCMAGD 180 (189)
T ss_dssp HHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGG-SCC----
T ss_pred HHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcE-EEeecCC
Confidence 8888888888884 799877666 4444 3457899999999 999999999998 88876 4556543
No 173
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.42 E-value=2.6e-14 Score=146.78 Aligned_cols=155 Identities=14% Similarity=0.198 Sum_probs=106.1
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------------eEEEEecccccCcCccHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------------~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
.++|++++|+|+||||||||+++|+|+++|+.|+|.+.+.+. .+.+++|...+.+..++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999876442 3668999888877888888874
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChH
Q 008750 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (555)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (555)
.+.. . ..+. -+++..|... .....+.+||
T Consensus 206 ~~~~-----------------~-----------------------~~d~--------vliDtaG~~~-~~~~l~~eL~-- 234 (328)
T 3e70_C 206 HAKA-----------------R-----------------------GIDV--------VLIDTAGRSE-TNRNLMDEMK-- 234 (328)
T ss_dssp HHHH-----------------H-----------------------TCSE--------EEEEECCSCC-TTTCHHHHHH--
T ss_pred HHHh-----------------c-----------------------cchh--------hHHhhccchh-HHHHHHHHHH--
Confidence 3210 0 0000 0133344321 1122233343
Q ss_pred HHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCH---------HHHHhhcceeEEecCCe
Q 008750 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR---------AFLDQLCTKIVETEMGV 333 (555)
Q Consensus 264 qrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~---------~~l~~~~dri~~l~~G~ 333 (555)
.+++++..++.+++||.+|. . ...+.+..+-+..+.|+||+||.- +.+....-.|.++..|.
T Consensus 235 -----~i~ral~~de~llvLDa~t~-~--~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 235 -----KIARVTKPNLVIFVGDALAG-N--AIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp -----HHHHHHCCSEEEEEEEGGGT-T--HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSS
T ss_pred -----HHHHHhcCCCCEEEEecHHH-H--HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCC
Confidence 48999999999999996665 3 334444444445789999999953 33444456788887775
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.41 E-value=2.2e-15 Score=148.51 Aligned_cols=143 Identities=20% Similarity=0.179 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH---cCCCCCceEEEEcCCC------ceEEEEecccccCcCccHHHHHHHhhHHHHHH
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~---G~~~p~~G~I~~~g~~------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~ 192 (555)
++++++|+|+||||||||+++|+ |+..|+.|+|.+++.+ ..+.+++|+..+.+..++.+++...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~---- 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---- 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Confidence 47999999999999999999999 9999999998776421 1123344544444455555554321100
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh--hhcCC-----------CccccCCCCCC
Q 008750 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM--PELGF-----------TADDGDRLVAS 259 (555)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~lgl-----------~~~~~~~~~~~ 259 (555)
. .-.....+ .... . ...+..+. ..+++ -....++.+..
T Consensus 102 ------~--~~~~~il~-------------------g~~~-~-~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 ------R--RGQHWLLD-------------------GFPR-T-LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp ------C--TTSCEEEE-------------------SCCC-S-HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred ------c--CCCeEEEE-------------------CCCC-C-HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 0 00000000 0000 0 01111111 11110 01223677789
Q ss_pred CChHHHHHHHHHHHh-ccCCCEEEEc----CCCCCCCHHHHHHHHHHHcC
Q 008750 260 FSSGWQMRMSLGKIL-LQDPDLLLLD----EPTNHLDLDTIEWLEGYLGK 304 (555)
Q Consensus 260 LSGGqrqRv~lAraL-~~~p~lLlLD----EPTs~LD~~~~~~l~~~l~~ 304 (555)
||| |+ ++| +.+|++++|| |||++||....+.+.+.++.
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 999 65 778 9999999999 99999999888887777654
No 175
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=2.7e-16 Score=162.48 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=67.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ce
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ 162 (555)
+|+++|+++.|++..+|+++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.+ .+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 3677888999977789999999999999999999999999999999999999999999876532 24
Q ss_pred EEEEecccccCc
Q 008750 163 IAFLSQEFEVSM 174 (555)
Q Consensus 163 ig~v~Q~~~~~~ 174 (555)
++|++|++.++.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 788999877654
No 176
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.37 E-value=7.8e-15 Score=134.96 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=68.9
Q ss_pred EEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeee-----EEEecCCccCC
Q 008750 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQAEAL 501 (555)
Q Consensus 427 ~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~-----~y~~Q~~~~~l 501 (555)
.+++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|.+ |++|.|.+++.++.. .|++|+. .+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~--~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHF--DL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEE--EC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecc--cc
Confidence 356677787777899999999999999999999999999999999999 999999988766521 2578874 35
Q ss_pred CCCCCHHHHHHh
Q 008750 502 DLDKTVLETVAE 513 (555)
Q Consensus 502 ~~~~tv~e~l~~ 513 (555)
. ..|+.+++..
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 4 7888888854
No 177
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.37 E-value=1.1e-13 Score=147.80 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=98.7
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------------ceEEEEecccccCcCc
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSR 176 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------------~~ig~v~Q~~~~~~~~ 176 (555)
-+++||++.+|++++|||+||||||||+++|+|+++|+.|+|.+.+.+ ..|+|++|+..+++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 478999999999999999999999999999999999999999986432 1479999988776777
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
++++++..+.. . ..+ .-+++..|..... ...
T Consensus 363 tV~e~l~~a~~-----------------~-----------------------~~D--------vVLIDTaGrl~~~-~~l 393 (503)
T 2yhs_A 363 VIFDAIQAAKA-----------------R-----------------------NID--------VLIADTAGRLQNK-SHL 393 (503)
T ss_dssp HHHHHHHHHHH-----------------T-----------------------TCS--------EEEECCCCSCCCH-HHH
T ss_pred HHHHHHHHHHh-----------------c-----------------------CCC--------EEEEeCCCccchh-hhH
Confidence 88887643210 0 000 0012333432111 111
Q ss_pred CCCCChHHHHHHHHHHHhc-cCCC-EEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEec
Q 008750 257 VASFSSGWQMRMSLGKILL-QDPD-LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~-~~p~-lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSH 314 (555)
+.+| ++++.+++++. ..|+ +||...||++.|.. ..+..+-...+.|.||+||
T Consensus 394 m~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 394 MEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred HHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence 1123 47888898774 4564 55555588886543 3333333456899999999
No 178
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.37 E-value=6.3e-15 Score=141.81 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=45.5
Q ss_pred EcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-------ceeeeEEEecCC
Q 008750 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE-------HNVLPNYFEQNQ 497 (555)
Q Consensus 433 ~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~-------~~~~~~y~~Q~~ 497 (555)
.|+++.+|+++ .+||+++|+||||||||||+++|+|+ +|++|+|.... ..-.++|++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 35556688875 89999999999999999999999999 99999874310 011356888875
No 179
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.35 E-value=2.4e-14 Score=143.32 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=58.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeEEEecCCccCCCCCCCHHHHHHhhccc---CcHH
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAED---WRID 521 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~ 521 (555)
.++|+||||||||||+++|+|+..|++|+|.++|.++ .++|++|+. .+.+..||.|++...... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~--~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG--GVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC--CCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999999999999998877543 367889874 466777888887544321 1112
Q ss_pred HHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 522 ~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+..++. ....+..+..|||||||||++|
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~ia 110 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPDT 110 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCCC
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhhh
Confidence 3333332 3345677889999999999886
No 180
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.35 E-value=1.8e-14 Score=153.64 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=88.1
Q ss_pred ceEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---ee----------
Q 008750 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV---------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~---~~---------- 488 (555)
..++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|. .+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4578899999997 56799999 999999999999999999999999999999999999998876 22
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|+. ..+....++.+++..... ++...+-.-..+-..+..||||| |||+||
T Consensus 209 ~~l~r~i~~v~q~~-~~~~~~~~v~~~~~~~ae---------~~~~~~~~v~~~ld~l~~lS~g~-qrvslA 269 (438)
T 2dpy_A 209 DGRARSVVIAAPAD-VSPLLRMQGAAYATRIAE---------DFRDRGQHVLLIMDSLTRYAMAQ-REIALA 269 (438)
T ss_dssp HHHHTEEEEEECTT-SCHHHHHHHHHHHHHHHH---------HHHTTTCEEEEEEECHHHHHHHH-HHHHHH
T ss_pred cccCceEEEEECCC-CCHHHHHHHHHHHHHHHH---------HHHhCCCCHHHHHHhHHHHHHHH-HHHHHH
Confidence 257889853 223345566666644321 11111100011223477899999 999875
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.35 E-value=1.1e-13 Score=146.28 Aligned_cols=147 Identities=22% Similarity=0.255 Sum_probs=91.3
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC-----------CCCceEEEEcCCCceEEEEecccccCcCccHHH
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----------EPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----------~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e 180 (555)
--++|+|+++.|+.++|||+||||||||+++|+|.. .|+.|.|.+++. .. -.+.+.+.+.... .+
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~-~~l~DtpGli~~a--~~ 221 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ER-FTLADIPGIIEGA--SE 221 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CE-EEEEECCCCCCCG--GG
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ce-EEEEeccccccch--hh
Confidence 358999999999999999999999999999999984 333344443320 01 1222222221100 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008750 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (555)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (555)
+. .+. . .+ .. ..++++.++..+++. +.++.+|
T Consensus 222 ~~--~L~----------------------~--------~f---l~---------~~era~~lL~vvDls----~~~~~~l 253 (416)
T 1udx_A 222 GK--GLG----------------------L--------EF---LR---------HIARTRVLLYVLDAA----DEPLKTL 253 (416)
T ss_dssp SC--CSC----------------------H--------HH---HH---------HHTSSSEEEEEEETT----SCHHHHH
T ss_pred hh--hhh----------------------H--------HH---HH---------HHHHHHhhhEEeCCc----cCCHHHH
Confidence 00 000 0 00 00 001123345555553 4567789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHH---HHHHHHHcCCCceEEEEec
Q 008750 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI---EWLEGYLGKQDVPMVIISH 314 (555)
Q Consensus 261 SGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~---~~l~~~l~~~~~tvIiiSH 314 (555)
|+|++|++++|++|+..|.+|+| |.+|.... ..+.+.+++.+.++|+||.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 99999999999999999999999 99998543 3334445556777777763
No 182
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.35 E-value=1.3e-15 Score=156.24 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhh
Q 008750 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 259 ~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~ 322 (555)
+||+||+||+..+++++.+|+++ ||| ....+.+.+ +. .+.||+++||+...++.+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l~~-l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERLAR-IN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHHHH-HC-SSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHHHH-hC-CCCeEEEecccCCCHHHH
Confidence 79999999999999999999987 999 222233322 33 578999999985544433
No 183
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.35 E-value=1.7e-13 Score=135.03 Aligned_cols=110 Identities=15% Similarity=0.012 Sum_probs=67.1
Q ss_pred CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhh
Q 008750 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514 (555)
Q Consensus 435 ~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (555)
+++.+|+++||++.+|++|||+||||||||||+++|+|.+ |.+.++...-.++|++|+. +....|+.+++...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 4557899999999999999999999999999999999965 3332221112467899873 44567888887543
Q ss_pred cc--------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhc
Q 008750 515 AE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554 (555)
Q Consensus 515 ~~--------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~L 554 (555)
.. ......+...|..+. ....+++..||+||++|+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~ 127 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE 127 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS
T ss_pred ccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc
Confidence 21 122334555665541 23567889999999999864
No 184
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.35 E-value=2.8e-14 Score=133.46 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=36.0
Q ss_pred ccCCCEEEEcCCCC-CCCHHHHHHHHHHHc---CCCceEEEEecCHH
Q 008750 275 LQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (555)
Q Consensus 275 ~~~p~lLlLDEPTs-~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~ 317 (555)
+.+|++||||||++ ++|+...+.+.+++. +.++++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 34899999999995 899999888887764 36899999999863
No 185
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.34 E-value=1.7e-13 Score=132.76 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=57.5
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEEEecCCccCCCCCCCH
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYFEQNQAEALDLDKTV 507 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y~~Q~~~~~l~~~~tv 507 (555)
-|+++||+|.+|++++|+||||||||||+++|+|++ | |.|.+ +.++ .++|++|++. .
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~--------~ 79 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT--------I 79 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH--------H
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH--------H
Confidence 589999999999999999999999999999999998 6 88887 3322 1346777642 1
Q ss_pred HHHHHh-----------h-cccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhc
Q 008750 508 LETVAE-----------A-AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554 (555)
Q Consensus 508 ~e~l~~-----------~-~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~L 554 (555)
...+.. . ........+..++...... .++ ..|||||+||++|
T Consensus 80 ~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i 133 (218)
T 1z6g_A 80 FEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKST 133 (218)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCS
T ss_pred HHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHh
Confidence 111110 0 0011233455666554321 112 5789999999987
No 186
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.31 E-value=3.1e-15 Score=158.47 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=52.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|++.|++|+|.+.+.+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 45677777777666688888 53 8999999999999999999999999999999999887643
No 187
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.31 E-value=3e-14 Score=150.33 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=82.5
Q ss_pred ccceeceEEEEecCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-eeEEEec
Q 008750 437 RLLFNRANLTIERGE--------------------KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFEQ 495 (555)
Q Consensus 437 ~~ll~~vsl~i~~Ge--------------------~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-~~~y~~Q 495 (555)
+.+++++||+|++|+ +++|+||||||||||+++|+|+.+|++|.|.+++.++ +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 9999999999999999999999999999998887543 2368888
Q ss_pred CCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChh--HHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG--EKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGG--ek~Rv~La 555 (555)
++ ..+..|+.|++...... ..+..+|..+++.. .+..+. |||| |+||+.||
T Consensus 116 ~~---~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--~~~~~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--YDFFII-ISATRFKKNDIDIA 168 (413)
T ss_dssp CS---SCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--CSEEEE-EESSCCCHHHHHHH
T ss_pred cc---ccCCeeehHhhcccchH---HHHHHHHHHcCCCc--cCCeEE-eCCCCccHHHHHHH
Confidence 74 23455666665332211 23567888888753 234444 9999 99999875
No 188
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.30 E-value=5.7e-12 Score=132.64 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=28.9
Q ss_pred EEECCCEEEEEcCCCccHHHHHH--HHHcCCCCCce
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLR--IIAGQEEPDSG 152 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk--~i~G~~~p~~G 152 (555)
-|++|++++|+|+||||||||++ ++.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 58899999999999999999999 44677776544
No 189
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.30 E-value=2.7e-12 Score=135.88 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=33.7
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.+|++++|++.+| +++|+|+|||||||||++|.++..
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999 999999999999999999966653
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=1.5e-12 Score=134.67 Aligned_cols=139 Identities=12% Similarity=0.144 Sum_probs=78.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc-CCCCCceEEEEcCCC--------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~g~~--------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
.+.|+||||+|||||+++|++ ++.|+.|.|.++|.. ..+++++|...+....+-.. . .
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~--------- 104 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG-N---N--------- 104 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------C---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC-C---c---------
Confidence 499999999999999999999 789999999877532 24667776654322111000 0 0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
........+..+....++.. .. .||| +.
T Consensus 105 -----------------------------------~~~~~~~~i~~~~~~~~~~~-----~~-~ls~-----------l~ 132 (354)
T 1sxj_E 105 -----------------------------------DRIVIQELLKEVAQMEQVDF-----QD-SKDG-----------LA 132 (354)
T ss_dssp -----------------------------------CHHHHHHHHHHHTTTTC----------------------------
T ss_pred -----------------------------------chHHHHHHHHHHHHhccccc-----cc-cccc-----------cC
Confidence 00001111222222223211 11 5676 78
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHH-HhhcceeEEe
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIVET 329 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l-~~~~dri~~l 329 (555)
.+|+++|+|||++ ||..+.+.|.+.+.+ .+.++|++||++..+ ..+.+|+..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~ 188 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLI 188 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEE
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEE
Confidence 8999999999999 999999999998865 368999999997533 3445565443
No 191
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.28 E-value=2.4e-14 Score=133.40 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN 160 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~ 160 (555)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 589999999999999999999999998 8999988654
No 192
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.28 E-value=1.5e-14 Score=157.07 Aligned_cols=185 Identities=14% Similarity=0.037 Sum_probs=107.3
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------ceEEEEecccccCcCccHHHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------~~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
.++++++|.|++|+.++|+|+||||||||+++|+|+++|++|.|.+.+.. ..++++.|........+..+.+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 47889999999999999999999999999999999999999999988753 13556665433212345655543
Q ss_pred HhhHH--------HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh-hcCCCcccc-
Q 008750 184 SAFKE--------EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDG- 253 (555)
Q Consensus 184 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lgl~~~~~- 253 (555)
..+.. ++........++....+. .. ...+........+..+.. .++++....
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh--~~----------------~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~ 389 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGH--AS----------------YSTLHAGDINQMVYRLESEPLKVPRSMLQ 389 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTC--EE----------------EEEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCC--Cc----------------ccccccCCHHHHHHHHHhcccccHHHHHh
Confidence 32210 000000000000000000 00 000001112222222221 133332111
Q ss_pred --C---CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEE--EecCHHHHHhhc
Q 008750 254 --D---RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI--ISHDRAFLDQLC 323 (555)
Q Consensus 254 --~---~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIi--iSHd~~~l~~~~ 323 (555)
+ .....+||||+||+++|. + | |++||+.....+.+.+. ..+.|+|+ +||+++.+...|
T Consensus 390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 1 223468999999887651 1 7 99999977665555443 34788885 899999998887
Q ss_pred ce
Q 008750 324 TK 325 (555)
Q Consensus 324 dr 325 (555)
+.
T Consensus 458 g~ 459 (511)
T 2oap_1 458 GV 459 (511)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 193
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.24 E-value=1.4e-12 Score=134.85 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=57.8
Q ss_pred ceEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 423 ~~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
.+++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 4688999999997 66789999 999999999999999999999999999999999998887664
No 194
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.24 E-value=5.6e-13 Score=135.55 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=82.8
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCCCc----------eEEEEecccccC-----cCccHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEVS-----MSRTVREE 181 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~g~~~----------~ig~v~Q~~~~~-----~~~tv~e~ 181 (555)
+..|++++|+|+||||||||+++|+ +..|++|+|.+ .|.+. .+||++|+|.+. +.+|+ ++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 4469999999999999999999999 99999999998 66432 369999998653 56788 77
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008750 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA-VNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (555)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (555)
+...+.+.... ...+.. ....+...++.++++.+||.....++++..|
T Consensus 240 l~~~f~~~~~~-------------------------------~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 288 (302)
T 2yv5_A 240 VRNYFREFLRY-------------------------------QCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKII 288 (302)
T ss_dssp GGGGCGGGHHH-------------------------------HHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-------------------------------cCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 64332110000 000000 1223344578889999999865678889999
Q ss_pred ChHHHHHHHHHH
Q 008750 261 SSGWQMRMSLGK 272 (555)
Q Consensus 261 SGGqrqRv~lAr 272 (555)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
No 195
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.22 E-value=3.7e-12 Score=115.82 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.1
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
+|+++ +|+.++|+|+||||||||+++|++.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 56666 8999999999999999999999999876 35
No 196
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.22 E-value=4.5e-14 Score=144.06 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=67.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEE-------------------ECCCEEEEEcCCCccHHHHHHHHHcCCC--CCceEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEV-------------------KKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVI 155 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i-------------------~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~ 155 (555)
.|+++||++.| .+++++|+|.+ .+|+++||+|+||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 48999999999 47899999988 9999999999999999999999999988 9999999
Q ss_pred E---cCCCc------eEEEEecccccCcCccHHHHH
Q 008750 156 K---AKSNM------KIAFLSQEFEVSMSRTVREEF 182 (555)
Q Consensus 156 ~---~g~~~------~ig~v~Q~~~~~~~~tv~e~~ 182 (555)
+ +|... .++++ |...++...++.+++
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 8 66432 24555 555554555666654
No 197
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.21 E-value=8.4e-14 Score=133.63 Aligned_cols=148 Identities=15% Similarity=0.063 Sum_probs=82.2
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
.++|++++|+|+||||||||+++|+|+++|+ | ..+++|+++...+ ..+..+++.....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------~~~g~v~~d~~~~-~~~~~~~~~~~~~------------ 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------LPAEVVPMDGFHL-DNRLLEPRGLLPR------------ 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------CCEEEEESGGGBC-CHHHHGGGTCGGG------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------CceEEEecCCCcC-CHHHHHHhccccc------------
Confidence 4689999999999999999999999999875 3 1356666664332 1122111100000
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHH-HHhccCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG-KILLQDP 278 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lA-raL~~~p 278 (555)
..... ..+. ......+..+...-.+.....++.. .+|+||+|++++| ++++.++
T Consensus 77 -~~~~~-~~~~----------------------~~~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~~~~~~i~eg 131 (208)
T 3c8u_A 77 -KGAPE-TFDF----------------------EGFQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGPECRVAIIEG 131 (208)
T ss_dssp -TTSGG-GBCH----------------------HHHHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECTTCCEEEEEE
T ss_pred -CCCCc-hhhH----------------------HHHHHHHHHHhcCCceecccCCccc-cCCCCCceEEcCCCcEEEECC
Confidence 00000 0000 0000111111111001111223333 5799999999998 8899999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHH-HHhhcce
Q 008750 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF-LDQLCTK 325 (555)
Q Consensus 279 ~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~-l~~~~dr 325 (555)
.++++|||.. ..+...--.+|+++++.+. +.+++.|
T Consensus 132 ~~~l~de~~~-----------~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 132 NYLLFDAPGW-----------RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp SSTTBCSTTG-----------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ceeccCCchh-----------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 9888999841 1122222467888888776 4555555
No 198
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.19 E-value=6.5e-13 Score=134.17 Aligned_cols=134 Identities=13% Similarity=0.004 Sum_probs=78.2
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (555)
.++.++||+|++|||||||+++|++++.+. |. + ...+.+|+|+..++ ..++++|+.......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~-~~~~~iv~~D~f~~-~~~~~~~l~~~~~~~----------- 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----G-EKSIGYASIDDFYL-THEDQLKLNEQFKNN----------- 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----G-GSCEEEEEGGGGBC-CHHHHHHHHHHTTTC-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----C-CceEEEeccccccC-ChHHHHHHhcccccc-----------
Confidence 357799999999999999999999998763 20 0 11245559997664 456666653210000
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-------ccccCCCCCCCChHHHHHHHHHHH
Q 008750 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-------ADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-------~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
..+.....+ ...+ ...+.+.+..+.-. ......+-..+||||+||+.+|++
T Consensus 91 ~l~~~~g~p------------------~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~ 148 (290)
T 1odf_A 91 KLLQGRGLP------------------GTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQK 148 (290)
T ss_dssp GGGSSSCST------------------TSBC----HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEE
T ss_pred chhhhccCc------------------chhH----HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccc
Confidence 000000000 0000 11122222222110 111234446899999999999843
Q ss_pred hccCCCEEEEcCCCCCCCHHH
Q 008750 274 LLQDPDLLLLDEPTNHLDLDT 294 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~ 294 (555)
...+|+|||+||||+++|+..
T Consensus 149 ~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 149 IKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp EESSCSEEEEEESSTTCCCCC
T ss_pred eEcCCCEEEEeCccccCCccc
Confidence 333999999999999999853
No 199
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=1.3e-13 Score=144.48 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=107.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHc------------CCCCCceEEEEcCCCc--------------eEEEEeccccc
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG------------QEEPDSGNVIKAKSNM--------------KIAFLSQEFEV 172 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G------------~~~p~~G~I~~~g~~~--------------~ig~v~Q~~~~ 172 (555)
.+.+|.++||||+||+|||||+++|+| .+.|+.|.|.+.+... ...++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 346899999999999999999999999 5679999999876211 13466777766
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
....+..+++...+. ..+. . ++.++.-++..
T Consensus 96 ~~~~s~~e~L~~~fl-------------~~ir------------------------~---------~d~il~Vvd~~--- 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFL-------------SHVR------------------------A---------VDAIYQVVRAF--- 126 (392)
T ss_dssp CCCCCSSSSSCHHHH-------------HHHT------------------------T---------CSEEEEEEECC---
T ss_pred ccCCcHHHHHHHHHH-------------HHHH------------------------H---------HHHHHHHHhcc---
Confidence 555444332210000 0000 0 01112222221
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhccee
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri 326 (555)
.+..+..+||+. +| +++++|||++.+|+...+..++.+. ..|.|++ +|+...+..+|++|
T Consensus 127 ~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i 192 (392)
T 1ni3_A 127 DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKV 192 (392)
T ss_dssp CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHH
Confidence 134444567653 89 9999999999999999877766653 3366653 99999999999999
Q ss_pred E-EecCC-eEeeccCChHH
Q 008750 327 V-ETEMG-VSRTYEGNYSQ 343 (555)
Q Consensus 327 ~-~l~~G-~~~~~~G~y~~ 343 (555)
. +|++| +. .+.|.+++
T Consensus 193 ~~~L~~G~~~-~~~~~~~~ 210 (392)
T 1ni3_A 193 YQYLTETKQP-IRKGDWSN 210 (392)
T ss_dssp HHHHHTTCSC-GGGSCCCH
T ss_pred HHHhccCCce-eecCCCCH
Confidence 9 89999 65 44566543
No 200
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.18 E-value=3.5e-13 Score=136.94 Aligned_cols=107 Identities=16% Similarity=0.090 Sum_probs=79.9
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eeEEEecCCccCCCCC
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLD 504 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------------~~~y~~Q~~~~~l~~~ 504 (555)
.++||++.+|++++|+||||||||||++.|+|.++|++|+|.+.+.++ .++|++|++. .+++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 457889999999999999999999999999999999999999877543 2578998752 26677
Q ss_pred CCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 505 ~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++.+++..+...... ..++..+|+. ...++.+.+|| |||++||
T Consensus 170 ~~v~e~l~~~~~~~~d---~~lldt~gl~-~~~~~~~~eLS---kqr~~ia 213 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD---VVLCDTSGRL-HTNYSLMEELI---ACKKAVG 213 (302)
T ss_dssp HHHHHHHHHHHHTTCS---EEEECCCCCS-SCCHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCc---chHHhcCCCC-cchhHHHHHHH---HHHHHHH
Confidence 7899998754211000 1246667764 34567888999 7887653
No 201
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.15 E-value=2.3e-13 Score=144.08 Aligned_cols=125 Identities=16% Similarity=0.087 Sum_probs=87.0
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee--------------
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-------------- 489 (555)
+++++++.+.|+...+|+++ +. .+|+.++|+|||||||||||++|+|.+.|.+|.|.+.+.++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 46777888777665678887 53 899999999999999999999999999999998887665442
Q ss_pred eEE---------EecCCccCCCCC----CCHHHHHHhhcc---------cCcHHHHHHHHhhCCCChhhhccccCCCChh
Q 008750 490 PNY---------FEQNQAEALDLD----KTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (555)
Q Consensus 490 ~~y---------~~Q~~~~~l~~~----~tv~e~l~~~~~---------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGG 547 (555)
.+| +.|++...+..+ .|+.+++..+.. ......+...|..+++... ..+..||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHHH
Confidence 112 225542211122 478887765421 1112344456778888642 378899999
Q ss_pred HHhchh
Q 008750 548 EKVNQT 553 (555)
Q Consensus 548 ek~Rv~ 553 (555)
++||++
T Consensus 298 ~~QRLa 303 (418)
T 1p9r_A 298 LAQRLV 303 (418)
T ss_dssp EEEEEE
T ss_pred HHHHhh
Confidence 999954
No 202
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.15 E-value=3e-12 Score=118.96 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=57.5
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHH
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~ 521 (555)
++||+|++||+++|+||||||||||++++.+-.. .+. .+...++++|++.... ...++.+++...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~-~d~~~g~~~~~~~~~~-~~~~~~~~~~~~------- 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VIS-SDFCRGLMSDDENDQT-VTGAAFDVLHYI------- 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEE-HHHHHHHHCSSTTCGG-GHHHHHHHHHHH-------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEc-cHHHHHHhcCcccchh-hHHHHHHHHHHH-------
Confidence 5899999999999999999999999999764221 122 1222356777653221 111222222111
Q ss_pred HHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 522 ~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
... ....+.. ........+||||||||+||
T Consensus 66 -~~~-~~~~g~~--~~~~~~~~~s~g~~qrv~iA 95 (171)
T 4gp7_A 66 -VSK-RLQLGKL--TVVDATNVQESARKPLIEMA 95 (171)
T ss_dssp -HHH-HHHTTCC--EEEESCCCSHHHHHHHHHHH
T ss_pred -HHH-HHhCCCe--EEEECCCCCHHHHHHHHHHH
Confidence 111 2233432 22345567799999999886
No 203
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.13 E-value=9.7e-14 Score=143.14 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=106.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECC-------CEEEEEcCCCccHHHHHHHHHcCC----CCCceEEEEcCC-------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKG-------EKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKS------- 159 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~G-------e~~~lvG~NGsGKSTLlk~i~G~~----~p~~G~I~~~g~------- 159 (555)
++.++++..|++..+++++++.|.+| +.++|+||||+|||||+++|+|.+ .+++|.+...+.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 45567777788888999999999887 899999999999999999999998 677777654321
Q ss_pred ---CceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 160 ---NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 160 ---~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
...|.+++|...+.. ++.+++.... +....+. + +......
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~~~-----------------~~~~~~i--~----------------~~~~~~~ 141 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYSAI-----------------EDFQIDI--M----------------IGKGPSA 141 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHHHH-----------------HTSCCCC--------------------------
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHHHH-----------------Hhcccce--e----------------eccCccc
Confidence 235889988765532 5655543211 0000000 0 0000112
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIii 312 (555)
..+...+..+++.. ....+..||+|++||+.++ .+||+...+.+.++|++ .+ +
T Consensus 142 ~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~ 198 (334)
T 1in4_A 142 KSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----V 198 (334)
T ss_dssp -------CCCEEEE--EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----C
T ss_pred ccccccCCCeEEEE--ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----C
Confidence 23444556666632 4566789999999998654 66777666666655532 33 4
Q ss_pred ecCHHHHHhhcce
Q 008750 313 SHDRAFLDQLCTK 325 (555)
Q Consensus 313 SHd~~~l~~~~dr 325 (555)
+|+.+.+..+|++
T Consensus 199 ~~~~~~~~~ia~~ 211 (334)
T 1in4_A 199 EIEDAAAEMIAKR 211 (334)
T ss_dssp CBCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 7999888888775
No 204
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.12 E-value=4.7e-11 Score=120.85 Aligned_cols=130 Identities=19% Similarity=0.128 Sum_probs=88.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
+.++++++.|+... ++++|+ +|++++|+|+||+||||+++.|++.+.+..|+|.+.+.+. |.+ ..
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~------~~~-----~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT------QRP-----AA 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS------SCH-----HH
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc------ccH-----hH
Confidence 45677888886543 788998 9999999999999999999999999998888887654321 100 00
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
+ +.+. .+.+..|++......
T Consensus 142 ~-~ql~---------------------------------------------------------~~~~~~~l~~~~~~~-- 161 (295)
T 1ls1_A 142 R-EQLR---------------------------------------------------------LLGEKVGVPVLEVMD-- 161 (295)
T ss_dssp H-HHHH---------------------------------------------------------HHHHHHTCCEEECCT--
T ss_pred H-HHHH---------------------------------------------------------HhcccCCeEEEEcCC--
Confidence 0 0000 001122332111000
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCC-CCCCCHHHHHHHHHHHc
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEP-TNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEP-Ts~LD~~~~~~l~~~l~ 303 (555)
.....+.+|.+|+.+...+++++|+||| +.++|......+.....
T Consensus 162 -~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 162 -GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp -TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 1233456789999998899999999999 99999988877766543
No 205
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.10 E-value=1.5e-12 Score=134.99 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=79.3
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eeEEEecCCccCCCCCC
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLDK 505 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------------~~~y~~Q~~~~~l~~~~ 505 (555)
.+||++.+|++++|+||||||||||++.|+|+++|++|+|.+.+.++ .++|++|++ ..+++..
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~-~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG-DKAKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSS-SSCCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecc-cccChhh
Confidence 46788999999999999999999999999999999999999877543 257899874 2166777
Q ss_pred CHHHHHHhhcc-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 506 TVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 506 tv~e~l~~~~~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++.+++..+.. ... ..++..+|+. ...++.+..|| |||++||
T Consensus 228 tv~e~l~~~~~~~~d----~~lldt~Gl~-~~~~~~~~eLS---kqr~~ia 270 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD----VVLCDTSGRL-HTNYSLMEELI---ACKKAVG 270 (359)
T ss_dssp HHHHHHHHHHHTTCS----EEEEECCCCS-SCCHHHHHHHH---HHHHHHH
T ss_pred hHHHHHHHHHhCCCH----HHHHHhcCCC-hhhhhHHHHHH---HHHHHHH
Confidence 89999875431 111 1245666764 34567888999 7887653
No 206
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=1.9e-12 Score=131.48 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=39.3
Q ss_pred EEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCCCc----------eEEEEeccccc
Q 008750 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEV 172 (555)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~g~~~----------~ig~v~Q~~~~ 172 (555)
|++..|++++|+|+||||||||+++|+|+..|++|+|.+ +|.+. .+|||+|.|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 345579999999999999999999999999999999998 55432 37999999854
No 207
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.08 E-value=2.2e-10 Score=115.91 Aligned_cols=136 Identities=14% Similarity=0.194 Sum_probs=88.9
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (555)
.+|++++|+|+|||||||+++.|++.+.+++| .+|.++.+++. ..+..+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--------~~V~lv~~D~~---r~~a~eqL~~---------------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--------KKIAFITTDTY---RIAAVEQLKT---------------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------CCEEEEECCCS---STTHHHHHHH----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------CEEEEEecCcc---cchHHHHHHH----------------
Confidence 47999999999999999999999999988777 24567777652 2233332210
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 008750 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (555)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~l 280 (555)
+.+.+|++... ..+ +...+.+|+++ .+|++
T Consensus 156 -----------------------------------------~~~~~gl~~~~------~~~-~~~l~~al~~~--~~~dl 185 (296)
T 2px0_A 156 -----------------------------------------YAELLQAPLEV------CYT-KEEFQQAKELF--SEYDH 185 (296)
T ss_dssp -----------------------------------------HHTTTTCCCCB------CSS-HHHHHHHHHHG--GGSSE
T ss_pred -----------------------------------------HHHhcCCCeEe------cCC-HHHHHHHHHHh--cCCCE
Confidence 11123433111 122 34456677754 99999
Q ss_pred EEEcCCCCCCCHHHHHHHH---HHHcC--CCceEEEE--ecCHHHHHhhcceeEEecCCeEe
Q 008750 281 LLLDEPTNHLDLDTIEWLE---GYLGK--QDVPMVII--SHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 281 LlLDEPTs~LD~~~~~~l~---~~l~~--~~~tvIii--SHd~~~l~~~~dri~~l~~G~~~ 335 (555)
+|+| |+++|+.....+. ..+.. ...+++++ +|+...+.++|+++..+..+.++
T Consensus 186 vIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 186 VFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp EEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred EEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 9999 8999986554443 34431 22345555 99999999999988766666543
No 208
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.07 E-value=1.5e-13 Score=131.08 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHH-HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 270 LGK-ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 270 lAr-aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
.|+ +++.+|++++|||||+++|..+.+.+.+.|.....- +.++|. . ..+|+|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhc--c--CCceEEEECC
Confidence 456 788999999999999999998877777665432111 244562 2 4689998875
No 209
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.07 E-value=3.1e-11 Score=122.65 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=77.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee----------eeEEEecCCccC-CC--CCCCHHH
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV----------LPNYFEQNQAEA-LD--LDKTVLE 509 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~---~~~~~----------~~~y~~Q~~~~~-l~--~~~tv~e 509 (555)
.+..|++++|+||||||||||+++|+ ...|++|.|.+ .|+.+ ..+|++|+|.-. +. +..|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34469999999999999999999999 99999999988 55322 247999987321 22 46678 6
Q ss_pred HHHhhcc---------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 510 TVAEAAE---------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 510 ~l~~~~~---------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++....+ ......++.+|..+++.....++++..|||.+++++.||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6632111 111235889999999986678999999999877778775
No 210
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.06 E-value=5.6e-14 Score=140.98 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=41.7
Q ss_pred CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
...+|++++|.+++| ++|+||||||||||+++|+|...+ |.|.++|.+
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~ 79 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPE 79 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTT
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHH
Confidence 445889999999999 999999999999999999999876 677777643
No 211
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.05 E-value=3.5e-12 Score=129.60 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=49.0
Q ss_pred EeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCcee-------eeEEEecCCcc
Q 008750 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGGEVLLGEHNV-------LPNYFEQNQAE 499 (555)
Q Consensus 428 ~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~-~~p~~G~v~~~~~~~-------~~~y~~Q~~~~ 499 (555)
+||++.|+++.++++++|+| +|+|+||+|||||++.|+|. ..|++| +.+.+.++ ..+|+.|..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~-- 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER-- 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC----
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC--
Confidence 47888998888999999998 99999999999999999998 888888 55433222 235666652
Q ss_pred CCCCCCCHHHHHHhhcccCcH---HHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 500 ALDLDKTVLETVAEAAEDWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 500 ~l~~~~tv~e~l~~~~~~~~~---~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+....++.|++......... ..+...+ .+..++.+..+|||+|||+.+|
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~a 125 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYI------DEQFERYLHDESGLNRRHIIDN 125 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhh
Confidence 233344555443321100000 0111111 1334678899999999998764
No 212
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.05 E-value=7.5e-12 Score=117.30 Aligned_cols=81 Identities=19% Similarity=0.127 Sum_probs=50.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEC----CceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHH
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLG----EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~-~G~v~~~----~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 526 (555)
+++|+||||||||||+++|+|++... .|...-. ...-.++|++|+. ++.++ +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~---------------~ 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT--------EGKKK---------------I 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET--------TCCEE---------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC--------cHHHH---------------H
Confidence 68999999999999999999987522 2321100 0011356777753 11111 1
Q ss_pred HhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 527 LGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 527 L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
++.+++.. +..++++..||||||||++||
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la 88 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPIL 88 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHHH
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHHH
Confidence 23333322 256788999999999999875
No 213
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.04 E-value=1.8e-11 Score=126.58 Aligned_cols=108 Identities=16% Similarity=0.097 Sum_probs=70.7
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEC-Cc------eeeeEEEecCCccCCCCCCCHHHHH
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLG-EH------NVLPNYFEQNQAEALDLDKTVLETV 511 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~-p~~G~v~~~-~~------~~~~~y~~Q~~~~~l~~~~tv~e~l 511 (555)
++++++. .+|++++|+||||||||||+++|+|... |.+|.|.+. |. ....+|++|+. .+....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~--~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGG--DVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSC--EEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCC--EecCcccHHHhh
Confidence 3444443 3799999999999999999999999999 999998775 32 22457888874 233444555531
Q ss_pred HhhcccCcHHH----HHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 512 AEAAEDWRIDD----IKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 512 ~~~~~~~~~~~----~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.......+ +..++..+++. +..+.++..|| ||++|++||
T Consensus 283 ---l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala 325 (358)
T 2rcn_A 283 ---LWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVE 325 (358)
T ss_dssp ---CCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHH
T ss_pred ---hcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHH
Confidence 11122222 34566777764 46788999999 999999875
No 214
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.02 E-value=3.8e-11 Score=125.06 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=66.5
Q ss_pred EEEeeeEE---cCC--ccce---------eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---
Q 008750 426 TIKNLEFG---YED--RLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488 (555)
Q Consensus 426 ~~~~l~~~---y~~--~~ll---------~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--- 488 (555)
++++++|+ |++ ..++ ++++|.|++|+.++|+||||||||||+++|+|+++|++|.|.+++..-
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 66778877 753 2344 899999999999999999999999999999999999999999975321
Q ss_pred -----eeEEEe-cCCccCCCCCCCHHHHHHhhc
Q 008750 489 -----LPNYFE-QNQAEALDLDKTVLETVAEAA 515 (555)
Q Consensus 489 -----~~~y~~-Q~~~~~l~~~~tv~e~l~~~~ 515 (555)
.++|++ |+....+....|+.+++..+.
T Consensus 217 ~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL 249 (361)
T ss_dssp TTCSSEEEEECC----------CCHHHHHHHHT
T ss_pred cccCCEEEEeecCccccccccccCHHHHHHHHH
Confidence 256887 764322235679999998763
No 215
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.02 E-value=6.3e-11 Score=126.99 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=50.9
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
.+.+++.. +..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 8 ~l~~l~~~--~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 8 KFRSLTLI--NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEEEE--EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceeEEEEe--ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 34455432 24689999999999 9999999999999999999999999999999998754
No 216
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.02 E-value=9.6e-11 Score=111.99 Aligned_cols=95 Identities=8% Similarity=-0.097 Sum_probs=65.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhc---ccCcHHHH
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA---EDWRIDDI 523 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~~~~~ 523 (555)
..+|++|+|+||||||||||+++|+|++.| .++|++|+....-....++.++..... .......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 578999999999999999999999998765 356888875321124568877765322 12234456
Q ss_pred HHHHhhCCCChhhhccccCCCChhHH----hchhc
Q 008750 524 KGLLGRCNFKADMLDRKVSLLSGGEK----VNQTL 554 (555)
Q Consensus 524 ~~~L~~~~~~~~~~~~~~~~LSGGek----~Rv~L 554 (555)
...+..+++. +...+++..+|+|++ +|+++
T Consensus 71 ~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~ 104 (211)
T 3asz_A 71 LEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRP 104 (211)
T ss_dssp HHHHHHHHTT-CCEEECCEETTTTEECSSCEEECC
T ss_pred HHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCC
Confidence 6677777664 356778999999975 45554
No 217
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.00 E-value=2.1e-09 Score=104.58 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=41.8
Q ss_pred cCCCEEEEcCCCCCC--CHHH-H---HHHHHHHcCCCceEEEEecCHHH--------HHhhcceeEEecC
Q 008750 276 QDPDLLLLDEPTNHL--DLDT-I---EWLEGYLGKQDVPMVIISHDRAF--------LDQLCTKIVETEM 331 (555)
Q Consensus 276 ~~p~lLlLDEPTs~L--D~~~-~---~~l~~~l~~~~~tvIiiSHd~~~--------l~~~~dri~~l~~ 331 (555)
.+|+++++|+|++.+ |+.. . ..|.+.+++.+.|||+++|.... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5422 2 33444556789999999998776 5678999999864
No 218
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.00 E-value=1.6e-10 Score=117.48 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=70.8
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
.++|...+|++++|+|+|||||||+++.|++.+.+..|+|.+.+. +.. .....+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~---------D~~---r~~a~eq------------- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA---------DTF---RAAAIEQ------------- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE---------CTT---CHHHHHH-------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc---------ccc---cHHHHHH-------------
Confidence 346667889999999999999999999999999988777765432 211 1000010
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHH---HHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM---SLG 271 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv---~lA 271 (555)
+..+++.+|++. +..+|||+.+++ +|+
T Consensus 151 --------------------------------------------L~~~~~~~gl~~------~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 151 --------------------------------------------LKIWGERVGATV------ISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp --------------------------------------------HHHHHHHHTCEE------ECCSTTCCHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHHHcCCcE------EecCCccCHHHHHHHHHH
Confidence 011122335431 236789999999 999
Q ss_pred HHhccCCCEEEEcCCCC
Q 008750 272 KILLQDPDLLLLDEPTN 288 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs 288 (555)
+++..+|+++|+|||..
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 99999999999999975
No 219
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.00 E-value=2e-11 Score=124.01 Aligned_cols=100 Identities=17% Similarity=0.098 Sum_probs=69.3
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee----------eeEEEecCCcc-------------
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV----------LPNYFEQNQAE------------- 499 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~---~~~~~----------~~~y~~Q~~~~------------- 499 (555)
++..|++++|+||||||||||+++|+|+..|++|.|.+ .|+.+ ..+|++|.+..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 45579999999999999999999999999999999988 55432 25788888631
Q ss_pred -CCCCCCCHHHHHHhhcc---cCcHHHHHHHHhhCCCChhhhccccCCCCh
Q 008750 500 -ALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546 (555)
Q Consensus 500 -~l~~~~tv~e~l~~~~~---~~~~~~~~~~L~~~~~~~~~~~~~~~~LSG 546 (555)
.+.++.|+ +++..... ......+..+|..+++..+..++.+..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 24577777 77654211 112345888999999987788899999986
No 220
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.95 E-value=3.4e-11 Score=122.20 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=42.3
Q ss_pred EEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCCCc---------eEEEEecccccCc----CccHHHH
Q 008750 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM---------KIAFLSQEFEVSM----SRTVREE 181 (555)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~g~~~---------~ig~v~Q~~~~~~----~~tv~e~ 181 (555)
+++.+|++++|+|+||+|||||+++|+|+..|..|+|.+ .|... .+||++|.|.+.. .+|+ ++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 556789999999999999999999999999999999987 54321 1699999987654 5678 77
Q ss_pred HHHh
Q 008750 182 FMSA 185 (555)
Q Consensus 182 ~~~~ 185 (555)
+...
T Consensus 247 l~~~ 250 (307)
T 1t9h_A 247 LGYT 250 (307)
T ss_dssp HGGG
T ss_pred HHHH
Confidence 7433
No 221
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.93 E-value=1.7e-11 Score=132.26 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=96.5
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHc--CCCCCceEEEEcCCCceEEEEecccccCcCc--cHHHHHHHhhHHHH
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEM 190 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~--tv~e~~~~~~~~~~ 190 (555)
.+++.+.++..+.|+|.+||||||+++.|.. ++.++.|++.+...+.+. .-++.....++. +|..+...+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a----- 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDA----- 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHH-----
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHH-----
Confidence 4678888999999999999999999999876 555555665543222110 001111111221 121111100
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc--ccCCCCCCCChHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRM 268 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv 268 (555)
...+..+ ..++++|+ ++|..+|+..- +..+....+||||+|+.
T Consensus 233 --~~~L~~~--------------------------------~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~ 277 (512)
T 2ius_A 233 --ANALRWC--------------------------------VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPD 277 (512)
T ss_dssp --HHHHHHH--------------------------------HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBC
T ss_pred --HHHHHHH--------------------------------HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccc
Confidence 0000000 01223333 44555565321 00111234677876642
Q ss_pred ----------HHHHHhccCCC-EEEEcCCCCCCCHHH---HHHHHHHH---cCCCceEEEEecCHH-------HHHhhcc
Q 008750 269 ----------SLGKILLQDPD-LLLLDEPTNHLDLDT---IEWLEGYL---GKQDVPMVIISHDRA-------FLDQLCT 324 (555)
Q Consensus 269 ----------~lAraL~~~p~-lLlLDEPTs~LD~~~---~~~l~~~l---~~~~~tvIiiSHd~~-------~l~~~~d 324 (555)
.+|+++...|. ++++||+++.+|... .+.|..+. +..|.++|++||++. ...++.+
T Consensus 278 ~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~ 357 (512)
T 2ius_A 278 PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPT 357 (512)
T ss_dssp TTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCE
T ss_pred cccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCC
Confidence 46677888898 899999999988432 22233332 345999999999987 5567777
Q ss_pred eeEE
Q 008750 325 KIVE 328 (555)
Q Consensus 325 ri~~ 328 (555)
||++
T Consensus 358 RI~l 361 (512)
T 2ius_A 358 RIAF 361 (512)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8765
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.91 E-value=2.5e-10 Score=130.74 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=29.5
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.++.+.++..+.|+||+|||||||+++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999999999998764
No 223
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.90 E-value=4.4e-10 Score=120.45 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=46.9
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
.+|+++||+|++ ++++|+||||||||||+++|+|+++|++|.|.++|.++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 579999999999 99999999999999999999999999999999987644
No 224
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.90 E-value=1.5e-11 Score=115.48 Aligned_cols=104 Identities=14% Similarity=0.221 Sum_probs=63.0
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee--------eEEEecCCccCCCCCCCHHHHHHhhcc
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAE 516 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~--------~~y~~Q~~~~~l~~~~tv~e~l~~~~~ 516 (555)
..|.+|++++|+||||||||||+++|+|. |..|.|.+++.++. ++|++|+.. ...++.+++.....
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAG 77 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHH
Confidence 35789999999999999999999999997 77899988865431 234444321 23466666654321
Q ss_pred cCcH----HHHHHHHhhCCCChhhh--ccccCCCChhHHhchhcC
Q 008750 517 DWRI----DDIKGLLGRCNFKADML--DRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 517 ~~~~----~~~~~~L~~~~~~~~~~--~~~~~~LSGGek~Rv~La 555 (555)
.... ..+..++..+++. ... ..++..+|+|+++|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~ 121 (191)
T 1zp6_A 78 RYAKEGYFVILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIE 121 (191)
T ss_dssp HHHHTSCEEEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHH
T ss_pred HHhccCCeEEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHH
Confidence 0000 0000111222221 111 446678999999998763
No 225
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.88 E-value=1.1e-11 Score=127.77 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=82.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCcee-----
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERG-------EKTAIIGPNGCGKSTLLKLIMGLE----KPRGGEVLLGEHNV----- 488 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~G-------e~iaI~G~NGsGKSTLlk~L~G~~----~p~~G~v~~~~~~~----- 488 (555)
++.++++..|++..+++++++.|..| +.++|+||||||||||+++|+|.+ .+.+|.+...+.++
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 34456666677777888999999877 899999999999999999999987 66666554332211
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhcccC----------cHHHHHHHHhhCCCChhhhccccCCCChhHHhchh
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAEDW----------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQT 553 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~ 553 (555)
.+.|++|.+ .+.. ++.+.+....... ....+...+..+++-. ...++..||+|+++|+.
T Consensus 99 ~~~~~~v~~iDE~~--~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 99 SLERGDVLFIDEIH--RLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HCCTTCEEEEETGG--GCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTTCS
T ss_pred HccCCCEEEEcchh--hcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHhcC
Confidence 356788753 3433 6777775432211 1123444566666643 57788999999999986
Q ss_pred c
Q 008750 554 L 554 (555)
Q Consensus 554 L 554 (555)
+
T Consensus 173 l 173 (334)
T 1in4_A 173 I 173 (334)
T ss_dssp E
T ss_pred c
Confidence 5
No 226
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.88 E-value=5.8e-11 Score=110.43 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=31.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCce
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHN 487 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~p~---~G~v~~~~~~ 487 (555)
++++|+|+||||||||+++|+|+++|+ .|.|++++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 589999999999999999999999998 8999988654
No 227
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.85 E-value=2.2e-09 Score=109.90 Aligned_cols=31 Identities=35% Similarity=0.555 Sum_probs=28.2
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+++|++.+| ..+|+|+||||||||+++|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 578888899 9999999999999999999844
No 228
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.85 E-value=1.1e-10 Score=120.09 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=50.2
Q ss_pred EEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 427 ~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
+++++| | ..++++++|.|.+|+.++|+||||||||||+++|+|+++|++|.|.+++.
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 344444 4 34789999999999999999999999999999999999999999999875
No 229
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.81 E-value=1.8e-10 Score=114.55 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=50.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCcee
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNV 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~-~G~v~~~~~~~ 488 (555)
+++++++++. .+|++++ +++|+.++|+||||||||||+++|+|+++|+ +|.|.+.+.++
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 3556677653 4799998 9999999999999999999999999999998 99998877654
No 230
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.78 E-value=4.6e-10 Score=106.43 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=41.0
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC----------CceEEEEecccccCcCccHHH
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------NMKIAFLSQEFEVSMSRTVRE 180 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~----------~~~ig~v~Q~~~~~~~~tv~e 180 (555)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+. ...++|++|++..+..+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 67788999999999999999999999999974 3444331 124678888766544444433
No 231
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.78 E-value=4e-10 Score=106.52 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=53.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecCCccCCCCCCCHHHHHHhhcccCcHH
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~ 521 (555)
|++++|+||||||||||+++|+|+++ ++| |.+++.+. .++|++|+. . ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~-~---g~~---------------- 58 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL-S---GTR---------------- 58 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET-T---SCE----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec-c---cce----------------
Confidence 78999999999999999999999998 888 77765322 245666652 1 100
Q ss_pred HHHHHHhhCCCChh------hhccccCCCChhHHhch
Q 008750 522 DIKGLLGRCNFKAD------MLDRKVSLLSGGEKVNQ 552 (555)
Q Consensus 522 ~~~~~L~~~~~~~~------~~~~~~~~LSGGek~Rv 552 (555)
..|+++++..+ .+.++...||+|||+++
T Consensus 59 ---~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 59 ---GPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp ---EEEEECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred ---ehhhcccccCCccccccccceEEEcchHHHHHHH
Confidence 12334444322 23455667999999876
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.78 E-value=6.3e-10 Score=118.96 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=60.0
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eeEEEecCCccCCCC
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDL 503 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------------~~~y~~Q~~~~~l~~ 503 (555)
-+++||++.+|++|+|+|+||||||||+++|+|+++|++|.|.+.+.+. .++|++|+. .+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~--~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT--GADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST--TCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc--CcCH
Confidence 4568899999999999999999999999999999999999999864322 246888874 4556
Q ss_pred CCCHHHHHHhh
Q 008750 504 DKTVLETVAEA 514 (555)
Q Consensus 504 ~~tv~e~l~~~ 514 (555)
..++.+++..+
T Consensus 361 ~~tV~e~l~~a 371 (503)
T 2yhs_A 361 ASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77888888754
No 233
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.78 E-value=1.2e-10 Score=113.25 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=42.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~ 159 (555)
.|+++|+...|+. +|+|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 4788888765532 455666 899999999999999999999999999999988764
No 234
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.77 E-value=1.1e-09 Score=121.53 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=101.7
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCCC-----ceEEEEecccccCc
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSN-----MKIAFLSQEFEVSM 174 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-G~I~~~g~~-----~~ig~v~Q~~~~~~ 174 (555)
++++.-||...+++++++.+..|+.++|+||||+|||||+++|+++.++.. |.+.+.+.. ..++++|+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~-- 115 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGR-- 115 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHH--
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHH--
Confidence 344444777889999999999999999999999999999999999999887 777765432 357777764311
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc---ccHHHHHHHHhhhcCCCcc
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL---DTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~lgl~~~ 251 (555)
.+.+............ .......... ....+. .+.. ....+. ......+..++..+...
T Consensus 116 --~~~e~~~~~~~~~~~~-r~~~~~~~~~-~~~~nl-~v~~-----------~~~~~~~~v~~~~~~~~~L~G~~~~~-- 177 (604)
T 3k1j_A 116 --RIVEKYREKAKSQESV-KSSNMRLKST-VLVPKL-LVDN-----------CGRTKAPFIDATGAHAGALLGDVRHD-- 177 (604)
T ss_dssp --HHHHHHHHHHHHHTCC-------------CCCEE-EECC-----------TTCSSCCEEECTTCCHHHHHCEECCC--
T ss_pred --HHHHHHHHhhccchhh-hhhccccccc-ccccce-eecc-----------ccCCCCCEEEcCCCCHHhcCceEEec--
Confidence 0111100000000000 0000000000 000000 0000 000000 00000112222222211
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
......+|+|++|++..++....++.+|+|||... |++.....|.+.|.
T Consensus 178 --~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 178 --PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp --CC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred --hhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 12225699999999999999999999999999988 89999999988885
No 235
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.76 E-value=1.4e-09 Score=118.00 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=46.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
.++++++|.|++|+.++|+||||||||||+++|+|+.+|++|.|.+.+..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 46788999999999999999999999999999999999999999987653
No 236
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.76 E-value=5.7e-09 Score=111.90 Aligned_cols=178 Identities=15% Similarity=0.083 Sum_probs=102.2
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (555)
.+.|+++..-+++|+.+.|.|++|+|||||+..|++...+..| ..+.|+.-+ ++..+.......
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--------~~Vl~~s~E------~s~~~l~~r~~~-- 253 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--------ENVAIFSLE------MSAQQLVMRMLC-- 253 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--------CCEEEEESS------SCHHHHHHHHHH--
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--------CcEEEEECC------CCHHHHHHHHHH--
Confidence 3578888878999999999999999999999999987655433 134555433 222221110000
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (555)
.... -+...+. ...+...+ ..++...+..++......+. ...+|.++.+ +
T Consensus 254 ------------~~~~--~~~~~l~------------~g~l~~~~-~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~ 303 (454)
T 2r6a_A 254 ------------AEGN--INAQNLR------------TGKLTPED-WGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--A 303 (454)
T ss_dssp ------------HHHT--CCHHHHH------------TSCCCHHH-HHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--H
T ss_pred ------------HHcC--CCHHHHh------------cCCCCHHH-HHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--H
Confidence 0000 0000000 00000000 11223333333322222222 3579999987 4
Q ss_pred HHHHhc--cCCCEEEEcCCCCCCCH--------HHHHHHHHHH----cCCCceEEEEec---------C--HH-------
Q 008750 270 LGKILL--QDPDLLLLDEPTNHLDL--------DTIEWLEGYL----GKQDVPMVIISH---------D--RA------- 317 (555)
Q Consensus 270 lAraL~--~~p~lLlLDEPTs~LD~--------~~~~~l~~~l----~~~~~tvIiiSH---------d--~~------- 317 (555)
.++.+. .+|+++++|+++...+. .....+.+.| ++.+.+||+++| | +.
T Consensus 304 ~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~S 383 (454)
T 2r6a_A 304 KCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRES 383 (454)
T ss_dssp HHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTT
T ss_pred HHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhcc
Confidence 555555 68999999999998743 2223333333 457999999999 3 22
Q ss_pred -HHHhhcceeEEecCCe
Q 008750 318 -FLDQLCTKIVETEMGV 333 (555)
Q Consensus 318 -~l~~~~dri~~l~~G~ 333 (555)
.+.+.||.|++|..+.
T Consensus 384 g~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 384 GSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSHHHHCSEEEEEEETT
T ss_pred chhHhhCCEEEEEeccc
Confidence 5778899999997654
No 237
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.76 E-value=7e-09 Score=107.31 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=47.8
Q ss_pred HHHHHHHHhccC--CCEEEEcCCCCCC----------CH----HH---HHHHHH---HHcCCCceEEEEecCHH------
Q 008750 266 MRMSLGKILLQD--PDLLLLDEPTNHL----------DL----DT---IEWLEG---YLGKQDVPMVIISHDRA------ 317 (555)
Q Consensus 266 qRv~lAraL~~~--p~lLlLDEPTs~L----------D~----~~---~~~l~~---~l~~~~~tvIiiSHd~~------ 317 (555)
+-+.++++++.+ |+++|+|||++.+ |. +. .+.+.+ .+++.+.|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677777654 9999999999998 32 11 122222 34567999999999653
Q ss_pred ----------HHHhhcceeEEecCCeE
Q 008750 318 ----------FLDQLCTKIVETEMGVS 334 (555)
Q Consensus 318 ----------~l~~~~dri~~l~~G~~ 334 (555)
.+..+||.++.++.+..
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeee
Confidence 26678999998887654
No 238
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.75 E-value=1.8e-09 Score=100.62 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=60.9
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---------ECC-------ceeeeEEEecCCccCCCCC
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL---------LGE-------HNVLPNYFEQNQAEALDLD 504 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~---------~~~-------~~~~~~y~~Q~~~~~l~~~ 504 (555)
++++|++.+| ..+|+||||||||||+++|.+++.+..|... ..+ ....+.+++|++...++++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 9999999999999999999998777654211 111 1223456677654434331
Q ss_pred ---CCHHHHHHhh--------cccCcHHHHHHHHhhCCCChhhh
Q 008750 505 ---KTVLETVAEA--------AEDWRIDDIKGLLGRCNFKADML 537 (555)
Q Consensus 505 ---~tv~e~l~~~--------~~~~~~~~~~~~L~~~~~~~~~~ 537 (555)
.++...+... .......++..+|..++|.++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~ 140 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY 140 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCC
Confidence 2222111110 01234567888999999976544
No 239
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.75 E-value=1.6e-12 Score=130.20 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=47.4
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
+++++.+.|++..++++++|++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 106 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence 4566777777777899999999999 99999999999999999999875 67776654
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.73 E-value=2.3e-11 Score=121.90 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=40.3
Q ss_pred ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 437 ~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
..+|++++|.+++| ++|+||||||||||+++|+|...+ |.+.+.+..
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~ 79 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPE 79 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTT
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHH
Confidence 34788899999999 999999999999999999998877 577776543
No 241
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.73 E-value=2.4e-10 Score=116.30 Aligned_cols=85 Identities=18% Similarity=0.121 Sum_probs=65.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEE-------------------ecCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTI-------------------ERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVL 482 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i-------------------~~Ge~iaI~G~NGsGKSTLlk~L~G~~~--p~~G~v~ 482 (555)
.|++++|++.|. +++++++|.+ .+|++|+|+||||||||||+++|+|++. |++|.|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 478899999993 6899999988 9999999999999999999999999988 9999988
Q ss_pred E---CCcee------eeEEEecCCccCCCCCCCHHHHHHh
Q 008750 483 L---GEHNV------LPNYFEQNQAEALDLDKTVLETVAE 513 (555)
Q Consensus 483 ~---~~~~~------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (555)
+ ++... ..+|+ |+. .++...++.+++..
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~--~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKK--GFPESYDMHRLVKF 151 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCT--TSGGGBCHHHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecC--CCCCCccHHHHHHH
Confidence 8 65322 12344 432 23345566666543
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.73 E-value=2.8e-09 Score=101.84 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=27.1
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
+++++ .+|++||+++|+||||||||||+++|+|+++..
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i 47 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNL 47 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCce
Confidence 45666 799999999999999999999999999998633
No 243
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.71 E-value=2.9e-09 Score=108.05 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=53.6
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eeEEEecCCccCCCCCCCHHHHHH
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLDKTVLETVA 512 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------------~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (555)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.++ .++|++|++ .+++..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~--~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE--GTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCT--TCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCC--CCCHHHHHHHHHH
Confidence 6999999999999999999999999999999999987553 246888874 4567778888886
Q ss_pred hh
Q 008750 513 EA 514 (555)
Q Consensus 513 ~~ 514 (555)
.+
T Consensus 179 ~~ 180 (304)
T 1rj9_A 179 AM 180 (304)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.71 E-value=1.3e-09 Score=110.42 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=58.6
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee-------e--eEEEecCCccC-CCC-CCCHHHHHH
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV-------L--PNYFEQNQAEA-LDL-DKTVLETVA 512 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~---~~~~~-------~--~~y~~Q~~~~~-l~~-~~tv~e~l~ 512 (555)
+.+|++++|+||||+|||||+++|+|...|.+|.|.+ .|+.+ . .+|+.|.|.-. +.+ ..|+ +++.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 4579999999999999999999999999999999986 33322 1 47899986321 111 5688 7773
Q ss_pred hhcc-----------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHh
Q 008750 513 EAAE-----------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKV 550 (555)
Q Consensus 513 ~~~~-----------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~ 550 (555)
...+ ......+..+|..+++.....+ +...|+.|.++
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~~lls~~~~ 302 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYVEFMTEIKD 302 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHHHHHHHHhh
Confidence 2211 0112357889999999754444 44455556665
No 245
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.71 E-value=1.5e-10 Score=119.29 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=54.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
|+++++++.|+...++++++|++.+|++++|+|+||||||||+++|+|++.|++|.|.+.+.
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 45667777886667899999999999999999999999999999999999999999887653
No 246
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.70 E-value=3.4e-09 Score=102.86 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=23.0
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH-cCCC
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA-GQEE 148 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~-G~~~ 148 (555)
+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999 9983
No 247
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.68 E-value=2.6e-08 Score=93.51 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 267 Rv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
.+.+|++|+.+|+++++| ||++|...++.+.+.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 367899999999999999 99999999988887764
No 248
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.67 E-value=7.7e-09 Score=107.73 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=29.2
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
.++++++++.+| .++|+||||||||||+.+|+
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 367789999999 88899999999999999997
No 249
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.67 E-value=9.3e-10 Score=122.14 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=49.6
Q ss_pred eEEEEeeeEEcCC--ccceece----------EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCcee--
Q 008750 424 VVTIKNLEFGYED--RLLFNRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNV-- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~--~~ll~~v----------sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p-~~G~v~~~~~~~-- 488 (555)
.++++++++.|++ +++++.+ +|+++. ++|+|||||||||||++|+|+..| ++|.|++.|.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5788999999964 2344433 366664 999999999999999999999989 799998887653
Q ss_pred -----------eeEEEecCCccCCCCCCCHHHHHHhh
Q 008750 489 -----------LPNYFEQNQAEALDLDKTVLETVAEA 514 (555)
Q Consensus 489 -----------~~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (555)
.++|++|+. .+.+..||.+++..+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~--~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEI--EISDASEVEKEINKA 121 (608)
T ss_dssp EECSSSSCCEEEESCC---C--CCCCHHHHHTTHHHH
T ss_pred ecCCccccceeEEeeecccc--cCCCHHHHHHHHHHH
Confidence 246778874 466677888888654
No 250
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.66 E-value=1.2e-09 Score=107.76 Aligned_cols=52 Identities=31% Similarity=0.407 Sum_probs=36.4
Q ss_pred ccEEEEeE-EEEe-CCceeeeeeeEEEEC---CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 96 SGVKLENI-SKSY-KGVTVLKDVTWEVKK---GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 96 ~~i~l~nl-s~~y-~~~~vL~~vsl~i~~---Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++|+++|| +|+| ++.++|+|+||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46999999 9999 777899999999999 9999999999999999999999865
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.65 E-value=5.6e-09 Score=100.93 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=40.3
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCceee------eEEEecCC
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVL------PNYFEQNQ 497 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p--~~G~v~~~~~~~~------~~y~~Q~~ 497 (555)
.-.+++|+.++|+||||||||||+++|+|..+| ..|.|.+.+.+.+ ++|++|++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~ 71 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 71 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH
Confidence 347899999999999999999999999999986 6788777654322 45777764
No 252
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.59 E-value=1e-08 Score=99.48 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=22.9
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh-CCC
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-GLE 474 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~-G~~ 474 (555)
...++||++.+|++++|+||||||||||+++|+ |++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999 998
No 253
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.58 E-value=2.3e-10 Score=119.37 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=82.5
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE-cCCC----ceEEEEecccccC-cCccHHHHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-AKSN----MKIAFLSQEFEVS-MSRTVREEFMS 184 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~-~g~~----~~ig~v~Q~~~~~-~~~tv~e~~~~ 184 (555)
.+|+++++.|++|++++|+||||||||||+++|+|. ..|.+.. .... ..+++++|.+.++ .+.+....+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999985 4677765 2111 1355666654221 11111000000
Q ss_pred hhH--HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCCh
Q 008750 185 AFK--EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262 (555)
Q Consensus 185 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSG 262 (555)
... .... ....+...+.+.. .+.... .+. ..+ ..-+.+...+.....+++
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~v---------------------~v~~~t--n~~-~~l-~alf~pg~ld~~~~~l~~ 285 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGSV---------------------KVNLEK--KHL-NKR-TQIFPPGIVTMNEYSVPK 285 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCSS---------------------CEEECC--SSS-CCE-EECCCCEEEEECSCCCCH
T ss_pred hccccCcch---HHHHHHHHhcCCC---------------------eEeecc--Cch-hhH-HHhhcCcccChhHHhhcH
Confidence 000 0000 0000000000000 000000 000 000 122333445566678999
Q ss_pred HHHHHHHHHHHhccCCCEEE-EcCCCC
Q 008750 263 GWQMRMSLGKILLQDPDLLL-LDEPTN 288 (555)
Q Consensus 263 GqrqRv~lAraL~~~p~lLl-LDEPTs 288 (555)
|+++|+..+.+++..|++++ ||+|+.
T Consensus 286 ~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 286 TLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 99999999988999999998 999998
No 254
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.58 E-value=6.1e-09 Score=98.83 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=36.8
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLL 483 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~-----~p~~G~v~~ 483 (555)
.|+++|+++.|+ ..++++ |.+.+|.+|+|+|+||||||||++.|+|.. .|+.|.+.+
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 478999999997 356777 899999999999999999999999999998 788886543
No 255
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.56 E-value=9.7e-08 Score=99.01 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEc-CCCCCCCHHHHHHHHHHHcC-C-CceEEEEe--cCHH
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLD-EPTNHLDLDTIEWLEGYLGK-Q-DVPMVIIS--HDRA 317 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLD-EPTs~LD~~~~~~l~~~l~~-~-~~tvIiiS--Hd~~ 317 (555)
+.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.. . +.++|+|. ||+.
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 3556789999998876 55666777889999 99999998876555444432 2 78899998 8874
No 256
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.56 E-value=1.1e-08 Score=104.90 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=54.2
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------------eEEEecCCccCCCCCCCHHHH
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------------PNYFEQNQAEALDLDKTVLET 510 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~----------------~~y~~Q~~~~~l~~~~tv~e~ 510 (555)
..+|++++|+||||||||||++.|+|.++|++|.|.+.+.++. +.|++|.. .+++..+|.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHH
Confidence 3689999999999999999999999999999999998765541 23777763 56777889998
Q ss_pred HHhh
Q 008750 511 VAEA 514 (555)
Q Consensus 511 l~~~ 514 (555)
+..+
T Consensus 204 l~~~ 207 (328)
T 3e70_C 204 IQHA 207 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 257
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.55 E-value=3.5e-08 Score=91.71 Aligned_cols=60 Identities=23% Similarity=0.192 Sum_probs=46.6
Q ss_pred eee--eeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE---------EcC-------CCceEEEEecccc
Q 008750 111 TVL--KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---------KAK-------SNMKIAFLSQEFE 171 (555)
Q Consensus 111 ~vL--~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~---------~~g-------~~~~ig~v~Q~~~ 171 (555)
..+ ++++|.+.+| +++|+|+||||||||+++|++++.+..|... ..+ ....|.+++|++.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 356 7889999999 9999999999999999999998887665421 121 2236888888754
No 258
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.55 E-value=6.2e-09 Score=109.80 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=40.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCC
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~--iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+++++ ++.|++.+ ++++||+|++|++ ++|+||||||||||+++|+|..
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 456677 88898777 9999999999999 9999999999999999999984
No 259
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.53 E-value=1.5e-09 Score=105.37 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=42.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++.|++|.|.+++.+
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 4788888755431 566666 8999999999999999999999999999988776543
No 260
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.51 E-value=9.4e-09 Score=116.35 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=53.1
Q ss_pred eEEEEeeeEEc---CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCceeeeEEEecCCcc
Q 008750 424 VVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAE 499 (555)
Q Consensus 424 ~l~~~~l~~~y---~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~-p~~G~v~~~~~~~~~~y~~Q~~~~ 499 (555)
.+.+++..+.. ++..++++++|+ |++++|+||||||||||||+|+|+.. |+.|.+.. .....++|++|-
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-a~~~~i~~v~~i--- 622 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-AEEAHLPLFDGI--- 622 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-SSEEEECCCSEE---
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-hhccceeeHHHh---
Confidence 46777775433 345789999998 99999999999999999999999864 67776432 223345566652
Q ss_pred CCCCCCCHHHHHHh
Q 008750 500 ALDLDKTVLETVAE 513 (555)
Q Consensus 500 ~l~~~~tv~e~l~~ 513 (555)
....++.+++..
T Consensus 623 --~~~~~~~d~l~~ 634 (765)
T 1ewq_A 623 --YTRIGASDDLAG 634 (765)
T ss_dssp --EEECCC------
T ss_pred --hccCCHHHHHHh
Confidence 223455666543
No 261
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.48 E-value=2.4e-10 Score=114.34 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=47.1
Q ss_pred EEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 426 ~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
+++++.+.|....++++++|.+.+| ++|+||||||||||+++|++... .|.+.+.+.
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 4566666676667899999999999 99999999999999999999875 667766543
No 262
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.48 E-value=9.8e-09 Score=101.19 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=36.0
Q ss_pred ceEEEEee-eEEc-CCccceeceEEEEec---CCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 423 SVVTIKNL-EFGY-EDRLLFNRANLTIER---GEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 423 ~~l~~~~l-~~~y-~~~~ll~~vsl~i~~---Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
++++++|+ ++.| ++..+|+++||+|.+ |++|+|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999 9999 677899999999999 9999999999999999999998854
No 263
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.46 E-value=7.2e-08 Score=91.12 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=26.7
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
||++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57889999999999999999999999999864
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.46 E-value=1.5e-08 Score=96.09 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=31.7
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
+-.++.++|++++|+|+||||||||+++|++.+ |.+.+++..
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~ 62 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADA 62 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGG
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccc
Confidence 334667899999999999999999999999987 888887643
No 265
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.45 E-value=1.3e-07 Score=97.69 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.5
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
=|++|+++.|+||+|||||||+..+++...+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999999877665654
No 266
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.44 E-value=2.7e-07 Score=86.87 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 268 v~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
...|++|+.+|+++++| ||++|....+.+.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 34589999999999999 99999998888877664
No 267
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.40 E-value=1.2e-07 Score=100.23 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=41.3
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
..|.++++++.|+++.++++++|+| +|+|+||||||||+++|+|...|..|
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 3588999999999888999999998 99999999999999999999875444
No 268
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.40 E-value=1.9e-07 Score=106.37 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=55.1
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCC-CCCHHHHHHHHHHH-c--CCCceEEE-EecCHHHHHhhccee
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYL-G--KQDVPMVI-ISHDRAFLDQLCTKI 326 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs-~LD~~~~~~l~~~l-~--~~~~tvIi-iSHd~~~l~~~~dri 326 (555)
..+..+|+|+.+|..+++.++.++++||+|||.. +||......+...+ . ....+|++ +||+.+.+..+++..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 4456789999999999999999999999999997 89977654444433 2 22456666 499988887777653
No 269
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.40 E-value=3e-09 Score=107.55 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=37.6
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
++++|+ +|++++|+|+|||||||++..|++.+.+..|.|.+.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 345666 89999999999999999999999999988888776543
No 270
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.39 E-value=1.2e-07 Score=94.71 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=61.3
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---eeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHH
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~---~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~ 523 (555)
|.+|+.++|+||||||||||++.|++... .|.+.++.. ...+.|+..... . ..+...+............
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~~ 99 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEER 99 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhhh
Confidence 78999999999999999999999998554 344432110 113456654321 1 0111222222222334445
Q ss_pred HHHHhhCCCChhhhccccCCCChhHHhchh
Q 008750 524 KGLLGRCNFKADMLDRKVSLLSGGEKVNQT 553 (555)
Q Consensus 524 ~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~ 553 (555)
..++..+.+.. ..++++..||+|+++++.
T Consensus 100 ~~~~~~l~l~~-~~~~~~~~ls~g~~~~i~ 128 (279)
T 1nlf_A 100 QAVADGLLIQP-LIGSLPNIMAPEWFDGLK 128 (279)
T ss_dssp HHHHHHEEECC-CTTSCCCTTSHHHHHHHH
T ss_pred hhccCceEEee-cCCCCcccCCHHHHHHHH
Confidence 55677777643 457789999999988763
No 271
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.39 E-value=1.1e-08 Score=97.15 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=44.6
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE--EEcC
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--IKAK 158 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I--~~~g 158 (555)
+|++++++...+.+.+++..++|++++|+|+||||||||+++|++.+. ..|.+ .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 577888888888888999999999999999999999999999999987 67877 6654
No 272
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.38 E-value=2.2e-08 Score=115.12 Aligned_cols=49 Identities=29% Similarity=0.355 Sum_probs=41.2
Q ss_pred eEEEEeeeEEc-------CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 424 VVTIKNLEFGY-------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 424 ~l~~~~l~~~y-------~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
.+.+++..+.. ++..++++++|++.+|++++|+||||||||||||+|++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 56777765533 24578999999999999999999999999999999874
No 273
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.37 E-value=1.3e-07 Score=99.83 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=38.3
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEEC
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLG 484 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~-----------~~p~~G~v~~~ 484 (555)
-++++|+++.|+.|+|+|+|||||||||++|+|. +.|..|.|.++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~ 202 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS 202 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec
Confidence 4779999999999999999999999999999998 34555655554
No 274
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.37 E-value=1.1e-07 Score=90.20 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-CCceEEEEecCHHHH--HhhcceeEEecC
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFL--DQLCTKIVETEM 331 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~-~~~tvIiiSHd~~~l--~~~~dri~~l~~ 331 (555)
.+.|+.+|..+++.+..+|+.+.++ ++.++|.....+.+.+.. .+.++|+.+|.+... ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999988888754433 345667777777776653 356788888987665 567999988853
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.36 E-value=1.9e-07 Score=89.66 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=33.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCC-------CceEEEECCc
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-------RGGEVLLGEH 486 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p-------~~G~v~~~~~ 486 (555)
-|++|++++|+||||||||||+++|+|...+ ..|.+++++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 6899999999999999999999999996555 3345666543
No 276
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.36 E-value=2.5e-06 Score=88.33 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=37.9
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC------CCceEEEEecCHHHHHhhcc
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~------~~~tvIiiSHd~~~l~~~~d 324 (555)
.+|.+|++||+... |......|..++.+ .+.++|++||+..+...+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~ 177 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP 177 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCH
Confidence 45889999999876 99888888888753 47889999999876655443
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.33 E-value=1.1e-07 Score=90.58 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=28.7
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
..+|++|+|+||||||||||+++|+|++.|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999864
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.33 E-value=7.4e-08 Score=97.04 Aligned_cols=97 Identities=14% Similarity=-0.000 Sum_probs=60.8
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEE-ecCCccCCCCCCCHHHHHHhhc-----------c
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF-EQNQAEALDLDKTVLETVAEAA-----------E 516 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~-~Q~~~~~l~~~~tv~e~l~~~~-----------~ 516 (555)
++.+|+|+|++|||||||++.|.+.+.+. | .......+ .|+.. + ...+..+++.... +
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D~f--~-~~~~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASIDDF--Y-LTHEDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGGGG--B-CCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccccc--c-CChHHHHHHhccccccchhhhccCc
Confidence 57799999999999999999999988763 2 01222334 88742 2 2446777775431 1
Q ss_pred -cCcHHHHHHHHhhCCCCh-----h--hhccccCCCChhHHhchhcC
Q 008750 517 -DWRIDDIKGLLGRCNFKA-----D--MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 517 -~~~~~~~~~~L~~~~~~~-----~--~~~~~~~~LSGGek~Rv~La 555 (555)
......+...|..+.-.. . .+......+||||++|+.+|
T Consensus 100 ~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a 146 (290)
T 1odf_A 100 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTG 146 (290)
T ss_dssp TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSC
T ss_pred chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccc
Confidence 122344555555553220 1 12344578999999998753
No 279
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.33 E-value=2.2e-07 Score=99.68 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhccCCCEEEEcCCC----------CCCCHHHHHHHHHHHc-------CCCceEEEEecCHHHHH
Q 008750 262 SGWQMRMSLGKILLQDPDLLLLDEPT----------NHLDLDTIEWLEGYLG-------KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 262 GGqrqRv~lAraL~~~p~lLlLDEPT----------s~LD~~~~~~l~~~l~-------~~~~tvIiiSHd~~~l~ 320 (555)
|++++|..+++|....|.||++||+. ++.|....+.+.++|. ..+..||.+||+++.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 67889999999999999999999994 3566554444444432 24678999999987654
No 280
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.31 E-value=1.8e-07 Score=90.96 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=40.5
Q ss_pred EEEEeeeEEcCCc-cceeceEEEEecCCEEEEECCCCCcHHHHHHHHh--CCCCCCceEEEECC
Q 008750 425 VTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM--GLEKPRGGEVLLGE 485 (555)
Q Consensus 425 l~~~~l~~~y~~~-~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~--G~~~p~~G~v~~~~ 485 (555)
+++++++..++.- .++.+ .|++|++++|+||||||||||+++|+ |...+..|.+.+.+
T Consensus 7 ~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp -CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred cccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 3455566555431 12322 68999999999999999999999999 66455556555543
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.29 E-value=1.7e-07 Score=87.67 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999983
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.28 E-value=3.4e-07 Score=86.47 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.1
Q ss_pred EEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
++|.+|++++|+|+||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 283
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.28 E-value=6e-08 Score=100.89 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=39.9
Q ss_pred eeceEEEEec--CCEEEEECCCCCcHHHHHHHHhCCCCCCc----eEEEE
Q 008750 440 FNRANLTIER--GEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLL 483 (555)
Q Consensus 440 l~~vsl~i~~--Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~----G~v~~ 483 (555)
...|+++|.+ |++++|+||||||||||+++|+|++.|++ |.+.+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 5568999999 99999999999999999999999999998 66554
No 284
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.28 E-value=7.9e-08 Score=96.76 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=40.9
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL 482 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G-~v~ 482 (555)
..|+++++.|++|+.++|+||||||||||++.|+|...|.+| .|.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 468999999999999999999999999999999999998877 453
No 285
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.27 E-value=3.5e-07 Score=106.71 Aligned_cols=54 Identities=26% Similarity=0.347 Sum_probs=43.9
Q ss_pred CceEEEEe-----eeEEc-CCccceeceEEEEec-------CCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 422 RSVVTIKN-----LEFGY-EDRLLFNRANLTIER-------GEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 422 ~~~l~~~~-----l~~~y-~~~~ll~~vsl~i~~-------Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
...|++++ +++.| ++..++++++|++.+ |++++|+||||||||||||+| |+..+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 45799999 99888 667899999999987 999999999999999999999 88664
No 286
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.26 E-value=1e-06 Score=91.55 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=29.8
Q ss_pred ECCCE-EEEEcCCCccHHHHHHHHHcCCC-----------CCceEEEEcCC
Q 008750 121 KKGEK-VGLVGVNGAGKTTQLRIIAGQEE-----------PDSGNVIKAKS 159 (555)
Q Consensus 121 ~~Ge~-~~lvG~NGsGKSTLlk~i~G~~~-----------p~~G~I~~~g~ 159 (555)
+.|-. ++|+|++|||||||++.|+|... |+.|.|.++|.
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~ 226 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR 226 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE
Confidence 34555 99999999999999999999875 56788888764
No 287
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.26 E-value=1.7e-07 Score=88.79 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=23.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+.+|++++|+||||||||||+++|+|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35799999999999999999999999875
No 288
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.25 E-value=8.5e-08 Score=100.06 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=44.6
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCcee------eeEEEec
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNV------LPNYFEQ 495 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~-~G~v~~~~~~~------~~~y~~Q 495 (555)
+|++++ +.+|+.++|+||||||||||+++|+|+++|+ +|.|.+.+.++ ..+|++|
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQ 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEe
Confidence 566654 7899999999999999999999999999997 89986544333 2357888
No 289
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.24 E-value=1.1e-07 Score=93.64 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=34.5
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH---cCCCCCceEEE
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVI 155 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~---G~~~p~~G~I~ 155 (555)
..++++.+ .+|++++|+|+||||||||+++|+ |+..|++|.|.
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 34455544 789999999999999999999999 99999999987
No 290
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.22 E-value=5.4e-06 Score=85.83 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.2
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHc--CCCCCceEEE
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVI 155 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p~~G~I~ 155 (555)
..+|++++++++ .++|||++|||||||++.|+| ++++.+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 358999999997 999999999999999999999 5566677654
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.22 E-value=4.3e-08 Score=92.88 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=42.3
Q ss_pred eeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCcee
Q 008750 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--LLGEHNV 488 (555)
Q Consensus 429 ~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v--~~~~~~~ 488 (555)
|++..++.....+.+++...+|+.|+|+||||||||||+++|++.+. ..|.+ .+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 44554444445666777788999999999999999999999999887 56766 6665433
No 292
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.21 E-value=1.3e-05 Score=97.10 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=26.8
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
|.+|+.|.|.||+|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999998775443
No 293
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.20 E-value=6.9e-07 Score=84.33 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.9
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
++|.+|++|+|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36789999999999999999999999999977665
No 294
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.19 E-value=4.5e-08 Score=102.06 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=38.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~ 483 (555)
.+++++++.+++|+.++|+||||||||||+++|+|. ..|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 578999999999999999999999999999999985 3566654
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.18 E-value=3.4e-07 Score=85.65 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999987
No 296
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.18 E-value=1.4e-06 Score=89.39 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=80.4
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (555)
+-|+.+.--+.+|+.+.|.|++|+|||||+.-|+....... ..+.|++= .++..+.....
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---------~~Vl~fSl------Ems~~ql~~Rl----- 93 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---------RGVAVFSL------EMSAEQLALRA----- 93 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---------CEEEEEES------SSCHHHHHHHH-----
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---------CeEEEEeC------CCCHHHHHHHH-----
Confidence 34555555688999999999999999999998876543211 24555552 23333221100
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~l 270 (555)
..... +++..... -..||+++.+|+..
T Consensus 94 -------------------------------------------------ls~~~--~v~~~~l~--~g~Ls~~e~~~l~~ 120 (338)
T 4a1f_A 94 -------------------------------------------------LSDLT--SINMHDLE--SGRLDDDQWENLAK 120 (338)
T ss_dssp -------------------------------------------------HHHHH--CCCHHHHH--HTCCCHHHHHHHHH
T ss_pred -------------------------------------------------HHHhh--CCCHHHHh--cCCCCHHHHHHHHH
Confidence 00000 11100000 13699999999999
Q ss_pred HHHhccCCCEEEEcCCCCCCCHHHHHHHHH-HHcCC-CceEEEEec
Q 008750 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGKQ-DVPMVIISH 314 (555)
Q Consensus 271 AraL~~~p~lLlLDEPTs~LD~~~~~~l~~-~l~~~-~~tvIiiSH 314 (555)
|...+.+++++|.|+|... +..+....+ +.+++ +..+|||-|
T Consensus 121 a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 121 CFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999999999999998654 444433333 33455 778888764
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=9.8e-07 Score=83.36 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=24.9
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
..+++||||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
No 298
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.11 E-value=3.5e-07 Score=94.69 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=46.6
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCceee------eEEEecCCccCCCCCCCHHHHHHhh
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVL------PNYFEQNQAEALDLDKTVLETVAEA 514 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~-~G~v~~~~~~~~------~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (555)
.+.+|+.++|+||||||||||+++|+|.++|+ .|.|...+.++. .+++.|.+. .....+..+.++.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~--~~~~~~~~~~La~a 192 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREV--HRDTLGFSEALRSA 192 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEB--TTTBSCHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeee--ccccCCHHHHHHHH
Confidence 67889999999999999999999999999987 566654433332 235666432 11234666666543
No 299
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.11 E-value=5.6e-06 Score=88.57 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHH
Q 008750 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (555)
Q Consensus 263 GqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l 319 (555)
.+.+....+...+.+++++|+......-......++.++|++.+..+|+|.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777788888889998888766554334455678888888899999998876654
No 300
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.10 E-value=1.9e-06 Score=99.39 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=47.0
Q ss_pred CceEEEEeeeEEc-----CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHH--------hCCCCCCce
Q 008750 422 RSVVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--------MGLEKPRGG 479 (555)
Q Consensus 422 ~~~l~~~~l~~~y-----~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L--------~G~~~p~~G 479 (555)
...+.+++..+.+ ++..++++++|++.+|++++|+||||||||||||+| .|..-|..+
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 3457777766543 234689999999999999999999999999999999 787777654
No 301
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.09 E-value=9.7e-07 Score=82.11 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEE
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIK 156 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~ 156 (555)
+|++++|+||||||||||+++|++.+++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999999864 4555543
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.08 E-value=1e-06 Score=83.26 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=31.7
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
..+...+|++|+|+|+||||||||+++|++.+ |.+.+++..+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 34566789999999999999999999999976 7777776544
No 303
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.08 E-value=1.7e-06 Score=89.18 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCCEEEEcCCCCCC---CHHHHHHHHHHH---cCCCceEEEEecCHHHHHh
Q 008750 277 DPDLLLLDEPTNHL---DLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 277 ~p~lLlLDEPTs~L---D~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~ 321 (555)
.|.+|++||+.... |......+.+.+ ...+.++|++||+..+...
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 38899999998876 344555666666 3457889999998865433
No 304
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.08 E-value=8.2e-07 Score=86.83 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=46.5
Q ss_pred cCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCcee------eeEEEecCCccCCCCCCCHHHHHHh
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVLLGEHNV------LPNYFEQNQAEALDLDKTVLETVAE 513 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~---G~~~p~~G~v~~~~~~~------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (555)
++++|+|+||||||||||+++|+ |+..|+.|.+.+.+.+. .+.++.|+. .+.+..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 47999999999999999999999 99999999876653211 122345542 35566678887764
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.07 E-value=6.4e-07 Score=91.42 Aligned_cols=46 Identities=30% Similarity=0.294 Sum_probs=41.8
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
+++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999999999999999999999999998754
No 306
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.06 E-value=5.7e-07 Score=88.55 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=33.3
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEE
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL 482 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~---G~~~p~~G~v~ 482 (555)
.+|++|+|+|||||||||++++|+ |+..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999887
No 307
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.05 E-value=9.6e-08 Score=93.81 Aligned_cols=57 Identities=28% Similarity=0.374 Sum_probs=47.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
.+++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 45667777776677899999999999 99999999999999999999875 66666653
No 308
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.05 E-value=6.1e-06 Score=84.95 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=25.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
-|++|+++.|.|++|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998875
No 309
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.04 E-value=2.5e-07 Score=103.68 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=35.6
Q ss_pred HHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHH
Q 008750 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (555)
Q Consensus 271 AraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~ 318 (555)
..+-..+.-++++| |+++++..+..++.. +...+.++|++.|.++.
T Consensus 93 ~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 93 GALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGG
T ss_pred HHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCch
Confidence 33345788899999 999999998866554 44468899999998875
No 310
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.03 E-value=2.5e-06 Score=97.11 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=40.8
Q ss_pred eEEEEeeeEEc-----CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 424 VVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 424 ~l~~~~l~~~y-----~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+.+++..... ++..++++++|+ .+|++++|+||||||||||||+|+|..
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46666654322 345689999999 999999999999999999999999863
No 311
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.03 E-value=1.1e-06 Score=82.15 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
|++++|+||||||||||+++|++ |..|.+.+++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccc
Confidence 68999999999999999999987 667888877543
No 312
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.03 E-value=1.1e-05 Score=82.36 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
-|++|+++.|.|++|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999988865
No 313
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.02 E-value=5.7e-07 Score=86.19 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=38.4
Q ss_pred cceeceEE-EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008750 438 LLFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (555)
Q Consensus 438 ~ll~~vsl-~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~ 483 (555)
+.|+++.+ .|++|+.++|+||||||||||++.|++...+..|.|.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~ 56 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY 56 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35666666 78999999999999999999999999887776665544
No 314
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=2.3e-06 Score=80.84 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=24.6
Q ss_pred ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 437 ~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
...++++||++.+|.+|+|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999999999999999998754
No 315
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.00 E-value=1.4e-07 Score=96.21 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=47.1
Q ss_pred eEEEEeCCceeeeeeeEEEECCC------EEEEEcCCCccHHHHHHHHHcCCC--CCceEEEEcCCCceEEEEeccccc
Q 008750 102 NISKSYKGVTVLKDVTWEVKKGE------KVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 102 nls~~y~~~~vL~~vsl~i~~Ge------~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
.+++.|++...|++++..+..+. ++||+|+||||||||+++|++++. |+.|. +++++++...
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~---------v~~i~~D~f~ 134 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC---------EEEEEGGGGB
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe---------EEEEeecccc
Confidence 34455666677888888887776 999999999999999999999987 34443 4566766543
No 316
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.99 E-value=1.9e-06 Score=80.08 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=28.6
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEE
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEV 481 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p-~~G~v 481 (555)
.+|+.++|+||||||||||+++|++.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998764 34444
No 317
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.96 E-value=2.4e-07 Score=90.96 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=47.1
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
.+++++.+.|....+++++++.+++| ++|+||||||||||+++|++... .|.+.+.+.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 34566666666666899999999999 99999999999999999999875 567766543
No 318
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.93 E-value=2.5e-06 Score=82.54 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=32.9
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~ 159 (555)
+.+.++|++++|+|+||||||||+++|+|. .|+|.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 334578999999999999999999999998 677776654
No 319
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.93 E-value=8.9e-06 Score=76.00 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=32.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCceee
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKP-----------RGGEVLLGEHNVL 489 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p-----------~~G~v~~~~~~~~ 489 (555)
+|+|+|+||||||||++.|+|...+ ..|.|.+++..+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 7899999999999999999998765 5788888876554
No 320
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.92 E-value=7.3e-07 Score=82.65 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.2
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
+|.+.+|+.++|+||||||||||+++|++.+.|..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 456778999999999999999999999999877666
No 321
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.90 E-value=1.9e-06 Score=81.59 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=33.8
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (555)
..+|++++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999998888877654
No 322
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.88 E-value=5.3e-06 Score=88.04 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=37.6
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~ 478 (555)
|+++|+ ..|++. . .+++.+|++++|+||||||||||+++|.++..|.+
T Consensus 7 l~~~~~-~~~~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 7 LELSNF-KSYRGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEESC-SSCCSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEeCE-EEECCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 677787 577542 1 35667899999999999999999999999887754
No 323
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.86 E-value=6.9e-06 Score=86.74 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=45.2
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (555)
.+++++.|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+..|+|.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 356677776544 678888 899999999999999999999999999887777654
No 324
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.86 E-value=1.1e-05 Score=77.86 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=33.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC--CCCC-----CceEEEECC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG--LEKP-----RGGEVLLGE 485 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G--~~~p-----~~G~v~~~~ 485 (555)
-|++|+.++|+||||||||||++.|++ ..+| ..|.+++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 488999999999999999999999999 5655 456666654
No 325
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.86 E-value=5.7e-07 Score=91.66 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=37.3
Q ss_pred eeEEcCCccceeceEEEEecCC------EEEEECCCCCcHHHHHHHHhCCCC--CCceE
Q 008750 430 LEFGYEDRLLFNRANLTIERGE------KTAIIGPNGCGKSTLLKLIMGLEK--PRGGE 480 (555)
Q Consensus 430 l~~~y~~~~ll~~vsl~i~~Ge------~iaI~G~NGsGKSTLlk~L~G~~~--p~~G~ 480 (555)
+++.|++...+++++..+..+. +|||+||||||||||+++|.+++. |..|.
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 3334444445666666666655 899999999999999999999887 44444
No 326
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.85 E-value=7.2e-06 Score=78.05 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
++|++++|+||||||||||+++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
No 327
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.85 E-value=3.9e-06 Score=81.22 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=31.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
...+|+.|+|.|+||||||||+++|+|. .|.|.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 4578999999999999999999999997 566665543
No 328
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.85 E-value=3.1e-06 Score=86.21 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=32.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEECCce
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLE--------KPRGGEVLLGEHN 487 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~--------~p~~G~v~~~~~~ 487 (555)
++++|+|+||||||||+++|+|.. .|+.|.|.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence 589999999999999999999987 7899998887644
No 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.84 E-value=6.4e-06 Score=77.91 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.8
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
|+...+|+.++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999999875
No 330
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.84 E-value=2.6e-06 Score=80.63 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=33.2
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~ 484 (555)
..+|++|+|+|+||||||||+++|++.+.+..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999988877776553
No 331
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.83 E-value=1.1e-05 Score=83.42 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=31.7
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
..+++++|++.+| +++|+||||||||||+++|.+
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3578899999999 999999999999999999986
No 332
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.82 E-value=9.8e-06 Score=82.38 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHH-HHHHHHcCCCce--EEEEecC
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVP--MVIISHD 315 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~-~l~~~l~~~~~t--vIiiSHd 315 (555)
||+++.+|+..|...+.++++++.|+|. ++..... .+..+.++.+.. +|||-|=
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 8999999999999999999999999986 4444433 333444556777 8888763
No 333
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.82 E-value=4.2e-05 Score=80.87 Aligned_cols=35 Identities=31% Similarity=0.158 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (555)
++.+++++|+|||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998876655543
No 334
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=3.9e-06 Score=75.75 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=30.9
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGE 485 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G--~v~~~~ 485 (555)
+|+.++|+||||||||||+++|++...+ +| .+++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcH
Confidence 8999999999999999999999998877 46 555543
No 335
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.79 E-value=1.1e-05 Score=76.83 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=27.4
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
.+|+.|+|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.78 E-value=1.1e-05 Score=76.33 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
++.+|.+++|+|++|||||||+++|++.++ .+.+++|+..+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------~~~~i~~D~~~~ 58 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------NCSVISQDDFFK 58 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------TEEEEEGGGGBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------CcEEEeCCcccc
Confidence 567799999999999999999999999864 257788876543
No 337
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.77 E-value=5.1e-05 Score=73.44 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceE
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~ 153 (555)
+++|||++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 58999999999999999999987766654
No 338
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.77 E-value=4.2e-06 Score=91.42 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=35.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce-EEE-EcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVI-KAK 158 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~I~-~~g 158 (555)
.+.+|++++|+|+||||||||+++|+|.+.|++| +|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5779999999999999999999999999999886 674 654
No 339
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.75 E-value=2.5e-07 Score=95.31 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=49.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (555)
++.+++.+.|+...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|+|.+
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34455555666667899999999999999999999999999999999998877666654
No 340
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.75 E-value=7.1e-06 Score=75.39 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=30.1
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
.+|++|+|+|+||||||||+++|++.+ |.+.+++..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999864 5666665443
No 341
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.75 E-value=7.7e-06 Score=75.14 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=28.8
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
.+|++++|+|+||||||||+++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 368999999999999999999999875 6666553
No 342
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.74 E-value=2.1e-05 Score=73.69 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC-----CC------ceEEEECCceeee
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK-----PR------GGEVLLGEHNVLP 490 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~-----p~------~G~v~~~~~~~~~ 490 (555)
+|+|+|+||||||||++.|+|... |+ .|.+.++|..+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~ 56 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 56 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEE
Confidence 689999999999999999999743 32 5678887765543
No 343
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.74 E-value=3.5e-06 Score=85.91 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=40.3
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
++++|++.+|++|+|+|+||+||||++..|++.+.+..|.|.+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 567888899999999999999999999999999998888877653
No 344
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.71 E-value=1.4e-05 Score=82.37 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=37.6
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCC--CCCc----eE-EEECCce
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG----GE-VLLGEHN 487 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~--~p~~----G~-v~~~~~~ 487 (555)
++.|++|++++|+||||||||||++.|++.. +|+. |. |++++..
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 5789999999999999999999999999987 6666 56 6776543
No 345
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.71 E-value=4.7e-06 Score=91.01 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=37.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE-ECCcee
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL-LGEHNV 488 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G-~v~-~~~~~~ 488 (555)
.+.+|++|+|+|+||||||||+++|+|.+.|++| .+. +++..+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 564 776543
No 346
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.71 E-value=1.9e-05 Score=82.60 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=35.9
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG------------LEKPRGGEVLLGE 485 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G------------~~~p~~G~v~~~~ 485 (555)
.+..|++++|+|+||+|||||+++|+| ...|+.|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 456899999999999999999999999 5678999998876
No 347
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.69 E-value=4.7e-06 Score=84.38 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=37.0
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
++|...+|++|+|+|+|||||||++..|++.+.+..|.|.+.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4556678999999999999999999999999998878776643
No 348
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.69 E-value=4.8e-06 Score=86.08 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=47.1
Q ss_pred ccEEEEeEEEEeCC-ceeee--------------eeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 96 SGVKLENISKSYKG-VTVLK--------------DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 96 ~~i~l~nls~~y~~-~~vL~--------------~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
..+.++||++.|+. +..|+ |+++.|.+|++++|+|++|+|||||++.|++.+
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34789999999975 56888 999999999999999999999999999999865
No 349
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.68 E-value=1.4e-05 Score=73.17 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.2
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
..|.+|+|+|+||||||||+++|++.+.+
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999999997654
No 350
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.67 E-value=1.2e-05 Score=75.92 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=26.6
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+...+|+.|+|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4445899999999999999999999998765
No 351
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.66 E-value=4e-06 Score=84.71 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHhc--cCCCEEEEcCCCCCCCHHH-HHHHHHH---H-cCCCc--eEEEEecCHHHHHhhcceeE
Q 008750 260 FSSGWQMRMSLGKILL--QDPDLLLLDEPTNHLDLDT-IEWLEGY---L-GKQDV--PMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 260 LSGGqrqRv~lAraL~--~~p~lLlLDEPTs~LD~~~-~~~l~~~---l-~~~~~--tvIiiSHd~~~l~~~~dri~ 327 (555)
+|+|++ .+++.+. ..|.++++ |.+|... ...+.+. + ...+. .+.+++|+-.-+..++|.|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 899886 4556665 78999998 8888754 3333332 2 33453 56666787777777777665
No 352
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.65 E-value=0.00023 Score=70.99 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEcCCCCCCCH----------HHHHHHHHHHcC-------CCceEEEEecCHH
Q 008750 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----------DTIEWLEGYLGK-------QDVPMVIISHDRA 317 (555)
Q Consensus 261 SGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~----------~~~~~l~~~l~~-------~~~tvIiiSHd~~ 317 (555)
+++++.+..++.+...+|.+|++||+.+-++. .....+...+.. .+..||.+|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46788888888888899999999999877653 222233333322 2345777888753
No 353
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.64 E-value=1.8e-05 Score=72.40 Aligned_cols=28 Identities=39% Similarity=0.372 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999998753
No 354
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.57 E-value=0.00072 Score=61.00 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999754
No 355
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.57 E-value=1.7e-05 Score=87.87 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=47.8
Q ss_pred eeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEEC
Q 008750 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-GEVLLG 484 (555)
Q Consensus 429 ~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~-G~v~~~ 484 (555)
++.--|+...+++.+++.+..|+.++|+||||||||||+++|++...+.. |.+.+.
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~ 95 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVF 95 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEE
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEe
Confidence 34445666778999999999999999999999999999999999999887 566554
No 356
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.56 E-value=1.2e-06 Score=90.31 Aligned_cols=53 Identities=21% Similarity=0.138 Sum_probs=42.1
Q ss_pred eeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008750 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (555)
Q Consensus 430 l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~ 482 (555)
+.+.|+...+++++++.+.+|.+|+|+|+||+|||||++.|++.+.+..|.|.
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 36 PRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp HHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred chhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 33344444577788888899999999999999999999999988776655543
No 357
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.55 E-value=0.00043 Score=71.41 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.2
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+++.|.|++|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887644
No 358
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.52 E-value=1.4e-05 Score=82.59 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=45.3
Q ss_pred eEEEEeeeEEcCC-cccee--------------ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 424 VVTIKNLEFGYED-RLLFN--------------RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 424 ~l~~~~l~~~y~~-~~ll~--------------~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
-+.++|+++.|+. +..++ |+.+.|.+|++++|+||+|||||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3678999999985 45788 899999999999999999999999999998754
No 359
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.50 E-value=5.7e-05 Score=68.03 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.1
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHH
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
+.++++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345555565 99999999999999999987
No 360
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.49 E-value=2.3e-06 Score=93.69 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=49.4
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
-++++.+.|....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|.+.+
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3466666666666888889888 8999999999999999999999999988878776653
No 361
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.49 E-value=5.6e-05 Score=68.09 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=24.0
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
.+.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555554 89999999999999999985
No 362
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.47 E-value=1.4e-05 Score=76.56 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC---CCCceEEEE
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIK 156 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~---~p~~G~I~~ 156 (555)
+.+++|+|++||||||++++|++.+ .++.|.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 566666654
No 363
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.42 E-value=5.5e-05 Score=71.71 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=25.9
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
-|++|+.++|+||||||||||++.|++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999999999
No 364
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.41 E-value=3.4e-05 Score=77.69 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=29.7
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
.+|++++|+|+||+||||++..|++.+.++.|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999988777
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.41 E-value=3.2e-05 Score=71.32 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=26.9
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
.+|++++|+|++||||||++++|++.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 46899999999999999999999998755 45
No 366
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.39 E-value=5.6e-05 Score=71.44 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=27.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
++.+|.+|+|+|++|||||||++.|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999999999764
No 367
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.37 E-value=5.2e-05 Score=73.33 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=30.7
Q ss_pred eeeeeeEEEE---CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q 008750 112 VLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (555)
Q Consensus 112 vL~~vsl~i~---~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~ 155 (555)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 3566666666 8999999999999999999999999877 55554
No 368
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.37 E-value=3.3e-05 Score=73.84 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=29.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEE
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLL 483 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~---~p~~G~v~~ 483 (555)
.+.+|+|+|++||||||++++|++.+ .+++|.+..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 35789999999999999999998765 667776654
No 369
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.37 E-value=1.3e-05 Score=83.00 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=38.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
...+.+.|++..|+.+.++++++|+| +|||++|+|||||++.|.|...+..|.+
T Consensus 15 ~~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp ------CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 45689999999998888999999987 9999999999999999998765555443
No 370
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.36 E-value=0.00012 Score=76.80 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=28.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHH--HhCCCCCCce
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKL--IMGLEKPRGG 479 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~--L~G~~~p~~G 479 (555)
-|++|+.++|+||||||||||++. +.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 578999999999999999999994 4577766544
No 371
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.35 E-value=7.5e-06 Score=89.55 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=47.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
+-++++...|....++.++++++ +|+.++|+||||||||||+++|++.+.+..|.|.+.+
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 34455655565445677777777 8999999999999999999999999988888876654
No 372
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.34 E-value=0.00032 Score=74.56 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=30.9
Q ss_pred cCCCEEEEcCCCCCCCH-HHHHHHHHHH---cCCCceEEEEecCH
Q 008750 276 QDPDLLLLDEPTNHLDL-DTIEWLEGYL---GKQDVPMVIISHDR 316 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~-~~~~~l~~~l---~~~~~tvIiiSHd~ 316 (555)
.+|++|++||+..-.+. ...+.|...+ .+.+..+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 4555555554 45688999999983
No 373
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.33 E-value=9.1e-05 Score=71.62 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCC-CCCHHHH-HHHHHHHcCC-Cc-eEEEE-ecCHHHHHhhc
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTI-EWLEGYLGKQ-DV-PMVII-SHDRAFLDQLC 323 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs-~LD~~~~-~~l~~~l~~~-~~-tvIii-SHd~~~l~~~~ 323 (555)
.+.|.-.+... ..+.+.+++|+||.-. ++|.... ..+..++... +. +++++ |.+.+.+.++.
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 35576666543 3689999999999987 5777665 3444444322 23 33333 45544444433
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.30 E-value=5.8e-05 Score=69.60 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=28.9
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEEC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLG 484 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G--~v~~~ 484 (555)
.+|+.|+|+|++||||||++++|++.+.+ .| .+.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 46899999999999999999999997755 44 44444
No 375
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.30 E-value=5.3e-05 Score=78.13 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
++.+++|+|++|||||||++.|+|.+.+..|+|.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 5678999999999999999999999888888776543
No 376
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.28 E-value=8.1e-05 Score=72.00 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=29.8
Q ss_pred eeceEEEEe---cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 440 FNRANLTIE---RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 440 l~~vsl~i~---~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
+.++||.+. +|..|+|.|++||||||+++.|+..+.+ .+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 445555555 8999999999999999999999998887 5444
No 377
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.24 E-value=0.00071 Score=68.57 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHc
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
-|++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
No 378
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.23 E-value=0.00023 Score=67.47 Aligned_cols=30 Identities=37% Similarity=0.492 Sum_probs=24.5
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHc
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
+.++.+.+| +.+|+|+|||||||++.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 445566665 999999999999999998863
No 379
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.22 E-value=3.6e-05 Score=81.26 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=41.7
Q ss_pred eeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008750 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (555)
Q Consensus 429 ~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~ 484 (555)
+++..|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+..+.|.+.
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 4555565432 567777 899999999999999999999999999887777654
No 380
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.0001 Score=75.47 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCc
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEH 486 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G-~~~p~~G~v~~~~~ 486 (555)
.++.|+||||+|||||+++|++ ++.|..|.+.+++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 3499999999999999999999 78899998877653
No 381
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.20 E-value=5.4e-05 Score=70.98 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=31.6
Q ss_pred EEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 104 SKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 104 s~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++.|++. .+++++||..+++ +++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4566553 6899999988887 7899999999999999999873
No 382
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.19 E-value=2.8e-05 Score=83.89 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=44.9
Q ss_pred EEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 426 ~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
+++++...|.+...++++++.+++| +.|+||||||||||+++|++... .+.+.+.+.
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~ 98 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 98 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGG
T ss_pred HHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehh
Confidence 4455555555556788999999999 99999999999999999999765 556666554
No 383
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.19 E-value=0.00023 Score=66.06 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=21.4
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
.+++++++..+.. +++|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 8999999999999999999983
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.15 E-value=5.2e-05 Score=72.04 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=33.0
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEc
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKA 157 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G--~I~~~ 157 (555)
.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3567899999999999999999999999877777 55544
No 385
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.14 E-value=0.00027 Score=71.10 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.8
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35678889999999999999999999875
No 386
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.14 E-value=0.0001 Score=75.93 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~ 483 (555)
.+.+|+|+|++|||||||++.|+|.+.+..|.|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 46789999999999999999999987777665544
No 387
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.14 E-value=0.00038 Score=63.52 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=23.6
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+|.+|+|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999999864
No 388
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.13 E-value=1.4e-05 Score=80.56 Aligned_cols=55 Identities=25% Similarity=0.193 Sum_probs=43.6
Q ss_pred EEeEEEEeCCceeeee-eeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q 008750 100 LENISKSYKGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (555)
Q Consensus 100 l~nls~~y~~~~vL~~-vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (555)
.+++...|++.. ++ ++|+++ |.+++++|+||+||||++..|++.+.+..|+|.+.
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456666676543 56 788876 99999999999999999999999998776666543
No 389
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.12 E-value=0.0004 Score=69.53 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
..+.|+||+|+|||||+++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887766543
No 390
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.09 E-value=0.00024 Score=66.84 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
No 391
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.09 E-value=8.4e-05 Score=80.13 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=43.8
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
+++++...|.+..+++++++.+++| +.|+||||+|||||+++|++... .+.|.+++
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 3444444455556788899999999 99999999999999999999874 56666654
No 392
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.08 E-value=0.0011 Score=70.47 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=78.8
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (555)
+.|+.+.-=+++|+.+.|.|++|+|||||+.-|+.......| ..+.|++=+ ++..+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--------~~vl~~slE------~~~~~l~~------- 246 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--------VGVGIYSLE------MPAAQLTL------- 246 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCEEEEESS------SCHHHHHH-------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--------CeEEEEECC------CCHHHHHH-------
Confidence 456666645899999999999999999999988865432222 234555422 22221110
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~l 270 (555)
++. ....|++..... -..||..+.+|+.-
T Consensus 247 -----------------------------------------------R~~--~~~~~i~~~~l~--~g~l~~~~~~~~~~ 275 (444)
T 2q6t_A 247 -----------------------------------------------RMM--CSEARIDMNRVR--LGQLTDRDFSRLVD 275 (444)
T ss_dssp -----------------------------------------------HHH--HHHTTCCTTTCC--GGGCCHHHHHHHHH
T ss_pred -----------------------------------------------HHH--HHHcCCCHHHHh--CCCCCHHHHHHHHH
Confidence 000 011233211111 13689999999998
Q ss_pred HHHhccCCCEEEEcCCCCCCCHHHHH-HHHHHHcCCCceEEEEec
Q 008750 271 GKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVPMVIISH 314 (555)
Q Consensus 271 AraL~~~p~lLlLDEPTs~LD~~~~~-~l~~~l~~~~~tvIiiSH 314 (555)
|...+.+.++++.|+|. ++..... .+..+.++.+..+|||-+
T Consensus 276 a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 276 VASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 88878888899999764 4443333 334444456777887754
No 393
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.08 E-value=0.00028 Score=66.84 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=23.7
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
.+.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3445555554 89999999999999999884
No 394
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.08 E-value=0.0002 Score=67.22 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.06 E-value=9.8e-05 Score=70.10 Aligned_cols=42 Identities=24% Similarity=0.148 Sum_probs=35.2
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECCc
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEH 486 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G--~v~~~~~ 486 (555)
+.+.+|..|+|+|++||||||+.+.|++.+.|..| .+.+++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 34567999999999999999999999998887777 6666543
No 396
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.04 E-value=0.00043 Score=73.46 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=29.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC------------CCceEEEEcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE------------PDSGNVIKAKS 159 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~------------p~~G~I~~~g~ 159 (555)
+++|||+||+|||||++.|+|... |..|.+.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 799999999999999999999854 56677777754
No 397
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.04 E-value=0.00016 Score=67.71 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=37.0
Q ss_pred EcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECC
Q 008750 433 GYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGE 485 (555)
Q Consensus 433 ~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~--------~~p~~G~v~~~~ 485 (555)
.|++ ..++++++|..+.+ +|+|+|++|+|||||++.+.+. ..+..+.+.+++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 8 IYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp -----CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 4544 35778888887776 7999999999999999999873 223456666664
No 398
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.04 E-value=0.00024 Score=65.88 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=26.6
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999975
No 399
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.03 E-value=0.00032 Score=71.88 Aligned_cols=31 Identities=39% Similarity=0.640 Sum_probs=24.2
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
+.+..+++.+| ..+|+||||||||||+.+|.
T Consensus 14 ~~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccCeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455555554 88999999999999999873
No 400
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.01 E-value=0.00026 Score=66.43 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 401
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.01 E-value=0.00033 Score=63.96 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=23.6
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++|.+++|||++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999975
No 402
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.01 E-value=0.0003 Score=73.42 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=32.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcC-----------CCCCceEEEEcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ-----------EEPDSGNVIKAK 158 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~-----------~~p~~G~I~~~g 158 (555)
.+..|.+++|||.||+|||||++.|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3457889999999999999999999998 667788887754
No 403
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.00 E-value=0.00057 Score=63.35 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=21.1
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
+++++++..+.. +|+|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 578888888877 899999999999999999997
No 404
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.99 E-value=0.00011 Score=76.15 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=37.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
.+.+.+++..|.++.+.++++|.| +|+|++|+|||||++.|.|...+..+
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 478888988888777888998877 99999999999999999887554433
No 405
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.98 E-value=0.00058 Score=72.49 Aligned_cols=38 Identities=37% Similarity=0.561 Sum_probs=31.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCcee
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEK------------PRGGEVLLGEHNV 488 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~------------p~~G~v~~~~~~~ 488 (555)
-+|+|+|+||||||||++.|+|... |..|.+.++|..+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3799999999999999999999854 6678888877543
No 406
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.97 E-value=0.00031 Score=65.10 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.3
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
++|+.+.+|.+|+|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999865
No 407
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.96 E-value=0.00016 Score=78.46 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.5
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.+++++|++.+| ..+|+|+||||||||+++|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 577899999999 9999999999999999999543
No 408
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.96 E-value=0.0002 Score=66.36 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=30.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
...+|..|.|+|++||||||+.+.|++.+.+..+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999998877655544
No 409
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.00021 Score=66.13 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=29.7
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
..+|.+++|+|.+||||||+++.|+..+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34788999999999999999999999887655544
No 410
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.95 E-value=4.2e-05 Score=77.07 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=40.5
Q ss_pred EeeeEEcCCccceec-eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008750 428 KNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (555)
Q Consensus 428 ~~l~~~y~~~~ll~~-vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~ 484 (555)
+++...|++.. .+ ++|+++ |.+++++|+||+||||++..|++.+.+..+.|.+.
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34444454332 44 667766 99999999999999999999999988776666543
No 411
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.94 E-value=0.00029 Score=72.73 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=31.8
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEE
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVL 482 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G--~~~p~~G~v~ 482 (555)
.++++++++++ .|+|+|++|||||||++.|+| .+++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 36788888888 999999999999999999999 5566666543
No 412
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.00076 Score=69.22 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.2
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997653
No 413
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.00026 Score=68.10 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=28.6
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHH-hCCCCCCceEEEE
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLI-MGLEKPRGGEVLL 483 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L-~G~~~p~~G~v~~ 483 (555)
.--+++|+.++|+||||||||||+..+ .+..++..+.+++
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 446899999999999999999996555 4443333334444
No 414
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.87 E-value=0.00052 Score=71.60 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=33.0
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE 485 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~-----------~~p~~G~v~~~~ 485 (555)
.+..|.+|+|+|+||+|||||+++|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467889999999999999999999998 667788887764
No 415
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.87 E-value=0.0013 Score=59.39 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
No 416
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.85 E-value=0.0006 Score=62.51 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 417
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.84 E-value=0.00084 Score=69.48 Aligned_cols=39 Identities=21% Similarity=0.471 Sum_probs=30.4
Q ss_pred CCE-EEEECCCCCcHHHHHHHHhCCCC-----------CCceEEEECCcee
Q 008750 450 GEK-TAIIGPNGCGKSTLLKLIMGLEK-----------PRGGEVLLGEHNV 488 (555)
Q Consensus 450 Ge~-iaI~G~NGsGKSTLlk~L~G~~~-----------p~~G~v~~~~~~~ 488 (555)
|-. |+|+|++|||||||++.|+|... |..|.+.+++..+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 444 99999999999999999999876 5678888876443
No 418
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.81 E-value=0.00055 Score=64.47 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=26.1
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
..+|.+++|+|++|||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998764
No 419
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.00091 Score=61.27 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 420
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.80 E-value=0.013 Score=60.62 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.0
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|+++.|.|+.|+|||||+..++-.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999999999777643
No 421
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.80 E-value=0.00049 Score=64.82 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.+.+|..|+|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999987664
No 422
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.80 E-value=0.00059 Score=62.77 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~ 150 (555)
+++|||++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 423
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.79 E-value=0.0018 Score=63.05 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++|||.+|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999999754
No 424
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=7.8e-05 Score=76.25 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=41.0
Q ss_pred EeCCceeeeeeeEEEECCCE--EEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 106 SYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
.||...+++.++..|..|++ +.|.||+|+||||+++++++.+.+..+
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 35667788999999999998 999999999999999999998766554
No 425
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.75 E-value=0.00036 Score=71.87 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.3
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
-|.+|+.+.|.||||||||||+..++....+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877666644
No 426
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.72 E-value=0.00082 Score=61.81 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|++|||||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999964
No 427
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.68 E-value=0.00073 Score=62.22 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.2
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
.+|..|+|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999974
No 428
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.67 E-value=0.0052 Score=58.98 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=39.5
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecC----------HHHHHhhcceeEEec
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD----------RAFLDQLCTKIVETE 330 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd----------~~~l~~~~dri~~l~ 330 (555)
.+|+++++||.-. |+....+.+.. |.+.+.+||++-|+ ...+..+||.|..|.
T Consensus 88 ~~~dvViIDEaQ~-l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999964 87776655544 43459999999993 344556899999875
No 429
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=8.6e-05 Score=75.92 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=37.1
Q ss_pred cCCccceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCCCCCc
Q 008750 434 YEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRG 478 (555)
Q Consensus 434 y~~~~ll~~vsl~i~~Ge~--iaI~G~NGsGKSTLlk~L~G~~~p~~ 478 (555)
|+...+++.++..|..|+. +.+.||+|+||||++++|++.+.+..
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4455577778888889988 99999999999999999998765443
No 430
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.62 E-value=0.0013 Score=68.18 Aligned_cols=31 Identities=35% Similarity=0.689 Sum_probs=26.0
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
+.+..+++.+| ..+|+|+||+||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45666776665 89999999999999999985
No 431
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.62 E-value=0.0002 Score=73.54 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=33.4
Q ss_pred eeeeeeeEEEECCCE--EEEEcCCCccHHHHHHHHHcCC
Q 008750 111 TVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888888999998 9999999999999999999875
No 432
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.59 E-value=0.0052 Score=57.89 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-------------CCCceEEEEecccccCcCccHHHHHHHhhHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------------KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-------------g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (555)
...+.|.|+.|+|||||++.++..+......+... ....-+.+-......
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 107 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK----------------- 107 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGG-----------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCccccc-----------------
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (555)
...+..++..+......
T Consensus 108 ----------------------------------------------~~~~~~~~~~~~~~~~~----------------- 124 (250)
T 1njg_A 108 ----------------------------------------------VEDTRDLLDNVQYAPAR----------------- 124 (250)
T ss_dssp ----------------------------------------------HHHHHHHHHSCCCSCSS-----------------
T ss_pred ----------------------------------------------HHHHHHHHHHhhhchhc-----------------
Q ss_pred HHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHH
Q 008750 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (555)
Q Consensus 270 lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~ 317 (555)
.+|.+|++||.-. ||......|...+.+ .+..+|++|++..
T Consensus 125 ------~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 ------GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp ------SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred ------CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.58 E-value=0.001 Score=64.17 Aligned_cols=27 Identities=37% Similarity=0.446 Sum_probs=23.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
+-.+|.+|+|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999999999986
No 434
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.57 E-value=0.00084 Score=62.00 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=27.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLG 484 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~p~---~G~v~~~ 484 (555)
..++|+|++|||||||++.|++.+++. -|.+..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 589999999999999999999876543 3555554
No 435
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.57 E-value=0.0021 Score=63.50 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.6
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.++..+.|.||.|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999999865
No 436
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.57 E-value=0.00026 Score=72.65 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=31.7
Q ss_pred ceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCC
Q 008750 439 LFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 439 ll~~vsl~i~~Ge~--iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+++.+++.+.+|++ |+|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 56777888889998 9999999999999999998753
No 437
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.56 E-value=0.00092 Score=61.52 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.6
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999853
No 438
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.00086 Score=62.85 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999765
No 439
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.54 E-value=0.007 Score=61.06 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHh--c--cCCCEEEEcCCCCCCC-H---------------HH------HHHHHHHHcCCCceEEEEecC
Q 008750 262 SGWQMRMSLGKIL--L--QDPDLLLLDEPTNHLD-L---------------DT------IEWLEGYLGKQDVPMVIISHD 315 (555)
Q Consensus 262 GGqrqRv~lAraL--~--~~p~lLlLDEPTs~LD-~---------------~~------~~~l~~~l~~~~~tvIiiSHd 315 (555)
-+|++.+.++..| + .+|+++++|--++-.- . +. ...|..++++.+.++|+|-|=
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566656677666 3 4799999998777641 0 11 111233456789999999998
Q ss_pred HH
Q 008750 316 RA 317 (555)
Q Consensus 316 ~~ 317 (555)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 76
No 440
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.54 E-value=0.0011 Score=63.92 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.2
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+|.+++|+|++||||||+.++|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999999999999743
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.53 E-value=0.0024 Score=64.44 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
+..+.|.||+|+|||||++.|++...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457899999999999999999987643
No 442
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.00095 Score=62.54 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
..+|+|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 443
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.51 E-value=0.0008 Score=67.68 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.1
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
++.+|+|+|++|+|||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999964
No 444
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.43 E-value=0.00091 Score=65.22 Aligned_cols=31 Identities=39% Similarity=0.609 Sum_probs=23.5
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+++.+..| +.|+||+|||||||+++|++...
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 33344444 99999999999999999998754
No 445
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.42 E-value=0.0012 Score=60.87 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
.+++|+|++|||||||++.|.+.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999987654
No 446
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.36 E-value=0.0021 Score=61.85 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
+|+|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999998776554
No 447
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.31 E-value=0.00072 Score=66.11 Aligned_cols=38 Identities=34% Similarity=0.276 Sum_probs=29.6
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 445677899999999999999999998764 23455543
No 448
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.30 E-value=0.0011 Score=64.64 Aligned_cols=31 Identities=39% Similarity=0.565 Sum_probs=23.4
Q ss_pred eeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 116 vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++.++.| +.|+||+|+|||||+++|++...
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 33334444 89999999999999999998753
No 449
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.27 E-value=0.00082 Score=65.09 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.-+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999543
No 450
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.27 E-value=0.006 Score=56.05 Aligned_cols=38 Identities=34% Similarity=0.587 Sum_probs=27.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC-----CCCCce----EEEECCceee
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL-----EKPRGG----EVLLGEHNVL 489 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~-----~~p~~G----~v~~~~~~~~ 489 (555)
+|+|+|+.|+|||||++.+++. ..|+.+ .+.+++..+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 68 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYL 68 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEE
Confidence 6999999999999999766543 456656 4555554443
No 451
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.25 E-value=0.0055 Score=56.31 Aligned_cols=28 Identities=39% Similarity=0.717 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHH-HcC----CCCCce
Q 008750 125 KVGLVGVNGAGKTTQLRII-AGQ----EEPDSG 152 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i-~G~----~~p~~G 152 (555)
+++|+|+.|+|||||++.+ .+. +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 6999999999999999655 444 456655
No 452
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.25 E-value=0.0022 Score=57.91 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 453
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.24 E-value=0.0015 Score=68.11 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=36.6
Q ss_pred CceeeeeeeEEEE---CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q 008750 109 GVTVLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (555)
Q Consensus 109 ~~~vL~~vsl~i~---~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (555)
+.+++-|+ |... .+..++|+|++|||||||++.|++...+..+.|.+.
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 44565555 3222 567899999999999999999999877777777654
No 454
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.24 E-value=0.036 Score=59.56 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=26.7
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
|+.+.-=+.+|+.+.|.|++|+|||||+--|+-.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4433324899999999999999999998776643
No 455
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.23 E-value=0.0012 Score=75.33 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=29.6
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
|.+.+|+.|.|+||+|||||||+++|++.+.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 467899999999999999999999999987653
No 456
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.21 E-value=0.037 Score=58.44 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
++.+++++|++|+||||++.-|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999977653
No 457
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.20 E-value=0.0016 Score=70.14 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=33.3
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEE
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLL 483 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G--~~~p~~G~v~~ 483 (555)
.+.+++.++.+++|+|++||||||+++.|.. +..+..|.+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l 202 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRF 202 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 4778999999999999999999999999875 44444444433
No 458
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.20 E-value=0.0024 Score=57.65 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.|+|+|+.||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 459
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.19 E-value=0.0036 Score=64.52 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
|-+++|||.+|+|||||++.|+|-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999984
No 460
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.19 E-value=0.0015 Score=63.72 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=29.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
...+..|.|+|++||||||+.+.|+..+.. +.+.+++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~--~~~~~~~D~ 67 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQG--NIVIIDGDS 67 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTT--CCEEECGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCC--CcEEEecHH
Confidence 445778999999999999999999886642 345555543
No 461
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.14 E-value=0.0031 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
No 462
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.13 E-value=0.0016 Score=66.95 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.8
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
-|++|+.+.|.||||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999888875443
No 463
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.05 E-value=0.0013 Score=73.44 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=26.9
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
++.+.+|.+|+|+|+||+|||||++.|++...+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence 467889999999999999999999999965543
No 464
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.05 E-value=0.013 Score=71.15 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=27.2
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
|.+|+.+.|.|++|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999999876543
No 465
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.05 E-value=0.0028 Score=60.02 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
.+-+|+|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999987
No 466
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.04 E-value=0.0036 Score=57.51 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|-+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998643
No 467
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.04 E-value=0.0027 Score=57.95 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 59999999999999999998643
No 468
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.03 E-value=0.0068 Score=64.30 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHH-HHHHcCCCce--EEEEec
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGYLGKQDVP--MVIISH 314 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l-~~~l~~~~~t--vIiiSH 314 (555)
|+..+.+++.-|...+.+.+++|.|+|. +++...... .++.++.+.. +|||-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7778888888888877788999999874 666554433 3344445666 887765
No 469
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.03 E-value=0.0038 Score=56.87 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
|..|.|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987654
No 470
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.00 E-value=0.0021 Score=62.22 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
..-+|+|.||+||||||+.+.|+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
No 471
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.99 E-value=0.039 Score=54.78 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
.++..+.|.||.|+|||||++.|+..+ .+..--+.++....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l---------------------------------- 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL---------------------------------- 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT----------------------------------
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh----------------------------------
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
...+.|...+++.=.-..+
T Consensus 111 -------------------------------------------------------------~~~~~g~~~~~~~~~~~~~ 129 (309)
T 3syl_A 111 -------------------------------------------------------------VGQYIGHTAPKTKEVLKRA 129 (309)
T ss_dssp -------------------------------------------------------------CCSSTTCHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------hhhcccccHHHHHHHHHhc
Q ss_pred cCCCEEEEcCCCCCC--------CHHHHHHHHHHHcCC--CceEEEEec----------CHHHHHhhcceeEEecC
Q 008750 276 QDPDLLLLDEPTNHL--------DLDTIEWLEGYLGKQ--DVPMVIISH----------DRAFLDQLCTKIVETEM 331 (555)
Q Consensus 276 ~~p~lLlLDEPTs~L--------D~~~~~~l~~~l~~~--~~tvIiiSH----------d~~~l~~~~dri~~l~~ 331 (555)
++.+|++||--.-. +......|.+.+... +..+|++++ +..+..+ ++.++.+..
T Consensus 130 -~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R-~~~~i~~~~ 203 (309)
T 3syl_A 130 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR-IAHHIEFPD 203 (309)
T ss_dssp -TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH-EEEEEEECC
T ss_pred -CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh-CCeEEEcCC
No 472
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.99 E-value=0.003 Score=61.76 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|+|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998753
No 473
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.98 E-value=0.02 Score=53.46 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=39.5
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCH----------HHHHhhcceeEEec
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR----------AFLDQLCTKIVETE 330 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~----------~~l~~~~dri~~l~ 330 (555)
.+.+++++||.-- +|+...+.+..+.. .+.+||+..+|. ..+..+||.|..|.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999644 88776666655444 489999998864 45557899998875
No 474
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.96 E-value=0.0036 Score=58.10 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 475
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.96 E-value=0.0031 Score=57.53 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 476
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.95 E-value=0.0041 Score=57.10 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
|-.|.|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999764
No 477
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.94 E-value=0.0011 Score=62.29 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
+++|+|++|||||||++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 478
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.93 E-value=0.0038 Score=56.14 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRII 143 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i 143 (555)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 479
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.92 E-value=0.0011 Score=62.26 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
.|+|+|++||||||+++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999998876543
No 480
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.91 E-value=0.004 Score=55.97 Aligned_cols=19 Identities=42% Similarity=0.572 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 008750 452 KTAIIGPNGCGKSTLLKLI 470 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L 470 (555)
.|+|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 481
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.89 E-value=0.0041 Score=57.76 Aligned_cols=23 Identities=43% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
No 482
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.87 E-value=0.0041 Score=58.84 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHc
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
+-+++|+|++||||||++++|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999997
No 483
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.86 E-value=0.0034 Score=57.83 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.8
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
..+..|.|+|+.||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999754
No 484
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.86 E-value=0.0038 Score=61.03 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.++|+|++|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 485
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.82 E-value=0.0062 Score=62.74 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=29.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE 485 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~-----------~~p~~G~v~~~~ 485 (555)
|-+|+|+|.+|+|||||++.|+|. ..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 568999999999999999999983 356677777654
No 486
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.81 E-value=0.0051 Score=56.40 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998643
No 487
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.79 E-value=0.0042 Score=61.14 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|+|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999999754
No 488
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.78 E-value=0.0043 Score=61.05 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 286 PTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 286 PTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
|||+++......+.+.+ .....+..+.+|....+...++++...-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~ 192 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELL 192 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHH
Confidence 99999988877666654 3344555667888888888888876543
No 489
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.76 E-value=0.0048 Score=57.41 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=24.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+|-.|+|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
No 490
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.75 E-value=0.0047 Score=57.38 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
.+++|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999975
No 491
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.74 E-value=0.0022 Score=67.71 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=30.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~ 483 (555)
++.+|+++|+|||||||++..|++.+.+..+.|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999988877666654
No 492
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.73 E-value=0.006 Score=56.77 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 493
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.70 E-value=0.0055 Score=55.61 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
++.|+|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 494
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.70 E-value=0.0051 Score=57.34 Aligned_cols=21 Identities=52% Similarity=0.771 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~ 473 (555)
|.|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 495
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.70 E-value=0.0048 Score=56.79 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 496
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.69 E-value=0.0052 Score=56.21 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.8
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
..+..+.|+|++||||||+.+.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999843
No 497
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.68 E-value=0.006 Score=55.91 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.+..|.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999754
No 498
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.68 E-value=0.0057 Score=55.53 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G 472 (555)
..|.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 499
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.64 E-value=0.0053 Score=57.00 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
..+|+|+|+.||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 347999999999999999999875
No 500
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.63 E-value=0.0056 Score=57.04 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987654
Done!