BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008751
(555 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96QE3|ATAD5_HUMAN ATPase family AAA domain-containing protein 5 OS=Homo sapiens
GN=ATAD5 PE=1 SV=4
Length = 1844
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 63/120 (52%)
Query: 34 GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLD 93
G S + LIL E+VDV F ED GF+ I+ K PVILT++ +L
Sbjct: 1289 GAEEPSRKNATSLILFEEVDVIFDEDAGFLNAIKTFMATTKRPVILTTSDPTFSLMFDGC 1348
Query: 94 RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153
E+ F+ P ++ S+LQMIC E V L+ + DIRK+I++LQFW ++ G
Sbjct: 1349 FEEIKFSTPSLLNVASYLQMICLTENFRTDVKDFVTLLTANTCDIRKSILYLQFWIRSGG 1408
>sp|Q4QY64|ATAD5_MOUSE ATPase family AAA domain-containing protein 5 OS=Mus musculus
GN=Atad5 PE=1 SV=1
Length = 1826
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%)
Query: 46 LILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMPK 105
LIL E+VDV F ED GF+ ++ K PVILT++ +L E++F++P
Sbjct: 1289 LILFEEVDVIFDEDAGFLNAVKTFMATTKRPVILTTSDPTFSLVFDGCFEEINFSIPSLL 1348
Query: 106 DLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153
++ S+LQ+IC E V L+ + DIRK+I++LQFW ++ G
Sbjct: 1349 NVASYLQVICLVENFRTDFKDFVTLLTANACDIRKSILYLQFWIRSGG 1396
>sp|O43086|ELG1_SCHPO Telomere length regulation protein elg1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=elg1 PE=1 SV=1
Length = 920
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 46 LILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLE--VSFTMPM 103
LIL+E+VD+ F +DRGF + + EK+K PV++T N + LP + + + V F
Sbjct: 492 LILLEEVDILFQDDRGFWQAVSTLIEKSKRPVVMTCNETDF-LPSAFLQEDHIVQFQSIS 550
Query: 104 PKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148
L ++ + A++ + ++++ + +D+R +M L FW
Sbjct: 551 SALLTDYISSVLYADRCIISRNVVESISYRYGSDLRGILMQLNFW 595
>sp|P38630|RFC1_YEAST Replication factor C subunit 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC1 PE=1 SV=1
Length = 861
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQ 68
L ++A D + V + +E + + GK H +I++++VD DRG + + Q
Sbjct: 388 LNAGVKNALDNMSVVGYFKHNEEAQNLNGK---HF--VIIMDEVDGMSGGDRGGVGQLAQ 442
Query: 69 IAEKAKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL 126
K P+IL N N+ DR L++ F P + S L I EK +L ++
Sbjct: 443 FCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV 502
Query: 127 LVQLIESCRADIRKTI 142
+ +LI++ R DIR+ I
Sbjct: 503 IDRLIQTTRGDIRQVI 518
>sp|Q12050|ELG1_YEAST Telomere length regulation protein ELG1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ELG1 PE=1 SV=1
Length = 791
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 46 LILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMP 104
L+L DVDV F E DRG+ A I ++ E ++ P++LT ++ +P L +
Sbjct: 402 LVLFNDVDVLFKEHDRGYWAMISKLCEFSRRPLVLTCKDLSL-VPSEL------IALASE 454
Query: 105 KDLLSHLQMICAAE------------KVELQQHLLVQLIESCRADIRKTIMHLQFWC 149
++ L H + I + ++E+ L +++ ADIRK +MHLQFWC
Sbjct: 455 QNSLFHTKKISTSTVYAFLTKYLKSLEIEVCDDWLRDVVKQNNADIRKCLMHLQFWC 511
>sp|Q8TZC5|RFCL_METKA Replication factor C large subunit OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rfcL PE=3
SV=1
Length = 510
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 35 VMGKSDNHVKPLILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSL- 92
V G SD + L+L+++VD P EDRG + + + +A+ P++L +N + LP SL
Sbjct: 110 VEGHSD---RVLVLVDEVDGIDPREDRGGVTALTRAVRQARNPMVLVAN-DPWVLPKSLR 165
Query: 93 DRLE-VSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151
D + + F D++ L+ IC E +E ++ L ++ + R D+R I L+ +
Sbjct: 166 DAVRMIEFRRLRVNDIVEALRRICEREGIEYEEVALRRIAKRARGDLRAAINDLEALARP 225
Query: 152 KG 153
G
Sbjct: 226 TG 227
>sp|Q9UXF6|RFCL_SULSO Replication factor C large subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcL
PE=1 SV=1
Length = 405
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS----NNITLPDSLDRLEVSFT 100
LIL+++VD + ED G I GI ++ EK K P+I+T+N L + +E+S
Sbjct: 102 LILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPGLRELRNKAKMIELSKL 161
Query: 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
P L L+ IC AEK+ L +I+S D R I LQ +GYGK
Sbjct: 162 GKYP--LRRILKKICQAEKIICDDEALNYIIDSSEGDARYAINILQ--GIGEGYGK 213
>sp|C3NHF4|RFCL_SULIN Replication factor C large subunit OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rfcL PE=3 SV=1
Length = 405
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS-NNITLPDSLDRLEVSFTMPM 103
LIL+++VD + ED G I GI ++ EK K P+I+T+N N L + ++ ++ +
Sbjct: 102 LILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPALRELRNKTKMVGLNKL 161
Query: 104 PKDLLSH-LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
K L L+ IC AEK+ L +I++ D R I LQ +GYGK
Sbjct: 162 GKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDTRYAINMLQ--GIGEGYGK 213
>sp|C4KHA7|RFCL_SULIK Replication factor C large subunit OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=rfcL PE=3 SV=1
Length = 405
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS-NNITLPDSLDRLEVSFTMPM 103
LIL+++VD + ED G I GI ++ EK K P+I+T+N N L + ++ ++ +
Sbjct: 102 LILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPALRELRNKTKMVGLNKL 161
Query: 104 PKDLLSH-LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
K L L+ IC AEK+ L +I++ D R I LQ +GYGK
Sbjct: 162 GKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQ--GIGEGYGK 213
>sp|C3NE95|RFCL_SULIY Replication factor C large subunit OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rfcL PE=3 SV=1
Length = 405
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS-NNITLPDSLDRLEVSFTMPM 103
LIL+++VD + ED G I GI ++ EK K P+I+T+N N L + ++ ++ +
Sbjct: 102 LILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPALRELRNKTKMVGLNKL 161
Query: 104 PKDLLSH-LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
K L L+ IC AEK+ L +I++ D R I LQ +GYGK
Sbjct: 162 GKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQ--GIGEGYGK 213
>sp|C3MQ13|RFCL_SULIL Replication factor C large subunit OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rfcL PE=3 SV=1
Length = 405
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS-NNITLPDSLDRLEVSFTMPM 103
LIL+++VD + ED G I GI ++ EK K P+I+T+N N L + ++ ++ +
Sbjct: 102 LILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPALRELRNKTKMVGLNKL 161
Query: 104 PKDLLSH-LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
K L L+ IC AEK+ L +I++ D R I LQ +GYGK
Sbjct: 162 GKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQ--GIGEGYGK 213
>sp|C3MVD2|RFCL_SULIM Replication factor C large subunit OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=rfcL PE=3 SV=1
Length = 405
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS-NNITLPDSLDRLEVSFTMPM 103
LIL+++VD + ED G I GI ++ EK K P+I+T+N N L + ++ ++ +
Sbjct: 102 LILLDEVDGINVREDTGAIQGILELIEKTKYPLIMTANDPWNPALRELRNKTKMVGLNKL 161
Query: 104 PKDLLSH-LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
K L L+ IC AEK+ L +I++ D R I LQ +GYGK
Sbjct: 162 GKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQ--GIGEGYGK 213
>sp|C3N5N1|RFCL_SULIA Replication factor C large subunit OS=Sulfolobus islandicus (strain
M.16.27) GN=rfcL PE=3 SV=1
Length = 405
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS-NNITLPDSLDRLEVSFTMPM 103
LIL+++VD + ED G I GI ++ EK K P+I+T+N N L + ++ ++ +
Sbjct: 102 LILLDEVDGINVREDTGAIQGILELIEKTKYPLIMTANDPWNPALRELRNKTKMVGLNKL 161
Query: 104 PKDLLSH-LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
K L L+ IC AEK+ L +I++ D R I LQ +GYGK
Sbjct: 162 GKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINMLQ--GIGEGYGK 213
>sp|Q8TPU4|RFCL_METAC Replication factor C large subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcL
PE=3 SV=1
Length = 607
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 44 KPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDR-LEVSFTM 101
K LI++++ D + DRG + I I + P++L +N P + LE+ F
Sbjct: 107 KRLIILDEADNIHGTADRGGMRAISGIIKGTLQPIVLIANDIYGLTPTIRNLCLEIKFGS 166
Query: 102 PMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ ++ L+ +C AE V Q L+Q+ E+ D R I LQ
Sbjct: 167 VQSRSMVPALKKVCGAEGVYCSQEALLQIAENAGGDFRSAINDLQ 211
>sp|A1RWU6|RFCL_THEPD Replication factor C large subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcL PE=3 SV=1
Length = 413
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 31 NSHGVMGKSDNHVKPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS-NNITL 88
N+ V+G S +IL+++VD + ED G + I ++ EK+ P++LT+N + L
Sbjct: 98 NTRSVLGYSGK----IILLDEVDGISTKEDAGGLQAIVELIEKSNWPIVLTANDPWDPKL 153
Query: 89 PDSLDRLE-VSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
D E + F +D++ L+ IC+ E VE + +L + ++ + D+R I LQ
Sbjct: 154 RPLRDLCELIEFKKIGKRDIMKVLENICSKEGVECSREVLSAIADNAKGDLRAAINDLQ 212
>sp|Q9YBS5|RFCL_AERPE Replication factor C large subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcL PE=3 SV=2
Length = 479
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 46 LILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRL-EVSFTMPM 103
+IL+++VD P ED G I + + + + P+++T+N D L L EVS +
Sbjct: 110 VILLDEVDGINPREDAGGIEALLSVIKTTENPIVMTAND---PWKDFLRPLREVSLMVEF 166
Query: 104 PKDLLSH----LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
L+H LQ IC AE++E ++ L + E D+R I LQ +GYG+
Sbjct: 167 RPLTLTHIVAVLQRICEAERIECEREALRYIAERSEGDLRSAINDLQ--AVAEGYGR 221
>sp|Q4JAB1|RFCL_SULAC Replication factor C large subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcL PE=3 SV=1
Length = 437
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 34 GVMGKSDNHVKPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS----NNITL 88
G+ GK +IL++++D ++ D G I I ++ EK K PVILT+N + +L
Sbjct: 98 GIKGK-------IILLDEIDGIYSRADAGAIPAILELIEKTKYPVILTANDPWDPSLRSL 150
Query: 89 PDSLDRLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148
+++ +E+ P L L+ IC EK+ L +IE D R I LQ
Sbjct: 151 RNAVKMIELKRLGKYP--LKRLLKRICEKEKIVCIDEALDHIIEQSEGDARYCINMLQ-- 206
Query: 149 CQNKGYGK 156
+GYGK
Sbjct: 207 GIAEGYGK 214
>sp|Q8Q084|RFCL_METMA Replication factor C large subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcL PE=3 SV=1
Length = 610
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 16 ADDEVVEVIHI-PDDENSHGVMGKSDNHV---------KPLILIEDVD-VFFPEDRGFIA 64
A D EVI + D+ + GV+ K K LI++++ D + DRG +
Sbjct: 69 AGDMEWEVIELNASDQRTAGVIEKIAGSAASMNTFFGGKRLIILDEADNLHGTADRGGMR 128
Query: 65 GIQQIAEKAKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQ 123
I I + P+IL +N P + LE+ F + ++ L+ +C +E V
Sbjct: 129 AISGIIKSTLQPIILIANDIYGLTPTVRNICLEIKFGSVQSRSMVPALKKVCESEGVSCS 188
Query: 124 QHLLVQLIESCRADIRKTIMHLQFWCQNK 152
Q ++Q+ E+ D R I LQ K
Sbjct: 189 QEAVLQIAENAGGDFRSAINDLQAAANGK 217
>sp|O26342|RFCL_METTH Replication factor C large subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcL PE=1 SV=1
Length = 479
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 41 NHVKPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLD-RLEV- 97
NH LI++++VD + EDRG + I +I ++++ P++LT+N S+ R V
Sbjct: 94 NHDLKLIILDEVDGIHGNEDRGGVQAINRIIKESRHPMVLTANDPYSKRLQSIKPRCRVL 153
Query: 98 SFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ + + L+ IC AE +E +L +L + R D+R I L+
Sbjct: 154 NLRKVHTSSIAAALRRICRAEGIECPDDVLRELAKRSRGDLRSAINDLE 202
>sp|A8AC24|RFCL_IGNH4 Replication factor C large subunit OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=rfcL PE=3 SV=1
Length = 476
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 46 LILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNSNNIT--LPDSLDRLEVSFTMP 102
LIL+++VD P D G +A I ++ +K K P+++T+N T P + L V F
Sbjct: 105 LILLDEVDGLSPRGDEGAVAAILELIKKTKNPIVMTANDPWGTHLRPIREESLLVEFKRI 164
Query: 103 MPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
L IC E V ++ + +IE + D+R +I LQ + YGK
Sbjct: 165 PKTKAREFLLKICEKEGVYCEKEAVDYIIEKNKGDLRASINDLQ--SIAEAYGK 216
>sp|Q3ISA5|RFCL_NATPD Replication factor C large subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcL PE=3 SV=1
Length = 483
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 44 KPLILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRL--EVSFT 100
+ LI++++ D +DRG A + ++ + A PV+L +N + + L +V F
Sbjct: 96 RQLIILDEADNLHQHKDRGGAAAMTRLVKDATQPVVLIAN-DYYEMSSGLRSACRDVEFR 154
Query: 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ ++ L+ IC E VE + +L ++ E+ R D+R + LQ
Sbjct: 155 DVSARSIVPVLRDICRQENVEFDEDVLQEIAEANRGDLRGAVKDLQ 200
>sp|B1YC69|RFCL_PYRNV Replication factor C large subunit OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=rfcL PE=3 SV=1
Length = 422
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS---------NNITLPDSLDRL 95
L+L ++VD + ED G + I +I E AK P+++T+N+ +I+L +L RL
Sbjct: 118 LVLFDEVDGLHVKEDEGGLEAIVEIVETAKVPIVMTANNPYDPKFRPLRDISLVVNLKRL 177
Query: 96 EVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151
++++ L+ IC AE + ++ L + +S D+R I LQ +
Sbjct: 178 S-------EEEVVEVLRRICTAEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLSG 226
>sp|A3MS27|RFCL_PYRCJ Replication factor C large subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcL PE=3 SV=1
Length = 421
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 41 NHVKPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS---------NNITLPD 90
+ ++L ++VD + ED G + I + E AK P++LT+N+ +I+L
Sbjct: 113 GYAGKIVLFDEVDGLHVKEDLGGLEAILNLIETAKVPIVLTANNPFDPKLRPLRDISLVV 172
Query: 91 SLDRLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150
L RL +++ L+ ICA+E + ++ L L +S D+R I LQ +
Sbjct: 173 GLKRLS-------EDEVVEVLKRICASEGAKCEEEALRSLAKSSYGDLRAAINDLQLYLA 225
Query: 151 NK 152
+
Sbjct: 226 GR 227
>sp|A3DNV8|RFCL_STAMF Replication factor C large subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcL PE=3 SV=1
Length = 423
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS--NNITLPDSLDRLEVSFTMP 102
+IL+++VD + DRG I I + E + PV++T+N+ + P L ++F
Sbjct: 104 IILLDEVDGISGTADRGAIDAILHLLEITRYPVVMTANNPWDQKLKPLRDASLMIAFKRL 163
Query: 103 MPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156
+D++ L+ IC EK+E + L ++ D+R I LQ +G+G+
Sbjct: 164 SERDVIIVLKRICQLEKLECEDAALREIARRSEGDLRSAINDLQ--AIAEGFGR 215
>sp|Q975D4|RFCL_SULTO Replication factor C large subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcL PE=3
SV=2
Length = 440
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 33 HGVMGKSDNHVKPLILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNS----NNIT 87
G+ GK LIL+++VD D G I I ++ K K P+ILT+N +
Sbjct: 97 FGIKGK-------LILLDEVDGLNARADAGAIDAILELINKTKYPIILTANDPWDPSLRP 149
Query: 88 LPDSLDRLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147
L +++ +E+ P L L+ IC AEK+ + L +IE D R I LQ
Sbjct: 150 LRNAVKMIELKRLTKYP--LKRILKKICEAEKITCEDEALDFIIEQSEGDARYAINMLQ- 206
Query: 148 WCQNKGYGK 156
+GYG+
Sbjct: 207 -GVAEGYGR 214
>sp|A1RSA3|RFCL_PYRIL Replication factor C large subunit OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcL PE=3 SV=1
Length = 423
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS---------NNITLPDSLDRL 95
L+L ++VD + ED G + I +I E AK PVI+T+N+ +I L +L RL
Sbjct: 118 LVLFDEVDGLHVKEDLGGLETIVEIIEIAKVPVIMTANNPYDPKFRPLRDIALVINLKRL 177
Query: 96 EVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151
D++ L+ ICA E + ++ L + +S D+R I LQ + +
Sbjct: 178 S-------EDDVVEVLRRICANEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLSS 226
>sp|O60182|RFC1_SCHPO Replication factor C subunit 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc1 PE=1 SV=1
Length = 934
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 22 EVIHIPDDENSHGVMGKSDNHV-----KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGP 76
++ + D ++ G G N V + +++++++D DRG + + I +K+ P
Sbjct: 454 QLFGVTDSQSLAGYFGTKANPVDMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKKSMIP 513
Query: 77 VILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESC 134
+I N LDR ++ F P + S + I E ++L + QL++
Sbjct: 514 IICICNDRAHPKLRPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGT 573
Query: 135 RADIRKTIMHLQFW 148
++D+R+ I L +
Sbjct: 574 QSDMRQIINLLSTY 587
>sp|B9LPV1|RFCL_HALLT Replication factor C large subunit OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=rfcL PE=3 SV=1
Length = 500
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 40 DNHVKPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRL--E 96
D + L+++++ D + DRG + I ++ +++ P++L +N + + L E
Sbjct: 105 DTASRQLVILDEADNIHGNYDRGGASAITELVKESGQPIVLIAN-DYYDMARGLRNATQE 163
Query: 97 VSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ F + ++ L+ IC E +E + L ++ E R D+R I LQ
Sbjct: 164 IEFRDVSARSIVPVLRDICRKEGIEFESDALERIAERNRGDLRGAINDLQ 213
>sp|A2BL93|RFCL_HYPBU Replication factor C large subunit OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=rfcL PE=3 SV=1
Length = 484
Score = 40.0 bits (92), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 44 KPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS--NNITLPDSLDRLEVSFT 100
+ +IL+++VD + DRG + I ++ K P+++T+N + P L V F
Sbjct: 104 RKIILLDEVDGISGTADRGGLDAILELINITKHPIVMTANDPWDQKLKPLRDASLMVPFY 163
Query: 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYG 155
+ ++ L+ ICAAE +E + L + + D+R I LQ +GYG
Sbjct: 164 RLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDLQ--AIAEGYG 216
>sp|Q12TX1|RFCL_METBU Replication factor C large subunit OS=Methanococcoides burtonii
(strain DSM 6242) GN=rfcL PE=3 SV=1
Length = 497
Score = 39.7 bits (91), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 39 SDNHVKPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRL-- 95
+ K LI++++ D + DRG I I + P++L +N + L S+ L
Sbjct: 99 TGTTAKRLIILDEADNIHGNADRGGARAIGGIIKNTDQPIVLIAN-DLYGLTPSVRSLCI 157
Query: 96 EVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
E+ F + ++ ++ IC EK+ +L +L ES D+R I LQ
Sbjct: 158 ELKFNSVQGRSMIPAMKRICVEEKIMCGVGVLEKLAESAGGDLRSAIKDLQ 208
>sp|P60373|RFCL_NANEQ Replication factor C large subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcL PE=3 SV=1
Length = 430
Score = 39.7 bits (91), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 6 TVSLCEAAQHADDEVVEVIHIPDDENS---HGVMGKSDN-----HVKPLILIEDVD-VFF 56
T S+ A EV+EV + D+ ++ H ++G++ H +IL+++VD +
Sbjct: 82 TSSVYALANELGYEVLEV-NASDERDAIHIHHIVGEASKGKPLFHKGRIILVDEVDGLSG 140
Query: 57 PEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLE-----VSFTMPMPKDLLSHL 111
EDRG + + I +++ P+I T+N L +L V F PK + + L
Sbjct: 141 KEDRGGVGALVNIIKQSSWPIICTAND---PWDQKLKKLREISIMVEFKRLSPKHVYNVL 197
Query: 112 QMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ I EK+++ +L + D+R I L+
Sbjct: 198 KKIVTNEKIKISDKILWDIAYKSGGDLRAAINDLE 232
>sp|Q2FQR4|RFCL_METHJ Replication factor C large subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcL PE=3 SV=1
Length = 483
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 37 GKSDNHVKPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRL 95
G + LI++++ D + DRG I ++ +A+ P+IL +N + L ++ L
Sbjct: 89 GSLTGAARKLIILDEADNLQGNADRGGARAIAEVIRQARQPLILIAN-DLYGLDGTIRNL 147
Query: 96 --EVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145
+V F K L+ L+ IC+ E++ L + E DIR + L
Sbjct: 148 CTKVQFKALPAKSLVPRLREICSREQLTCSAQALTDIAEQSGGDIRSAVTML 199
>sp|A2SQR6|RFCL_METLZ Replication factor C large subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcL PE=3 SV=1
Length = 476
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 44 KPLILIEDVDVF-FPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRL--EVSFT 100
+ LI+I++VD DRG I I ++AK P++L +N + + DS+ RL V F
Sbjct: 96 RKLIIIDEVDNLEGNADRGGARAIADILKEAKQPIVLIAN-DAYGVSDSIRRLCDPVPFR 154
Query: 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145
L ++ IC E + + L + ES D+R + L
Sbjct: 155 AIGVSTLQKRMKEICRFEDIACGEDALSAIAESSAGDMRTAVNML 199
>sp|Q46AT6|RFCL_METBF Replication factor C large subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcL PE=3 SV=1
Length = 642
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 13 AQHADDEVVEVIHIPDDENSHGVMGKSDNHV---------KPLILIEDVD-VFFPEDRGF 62
A+ D EV+E+ D+ + GV+ + K LI++++ D + DRG
Sbjct: 64 ARDLDWEVIELNA--SDQRTAGVIERVAGSAASMNTFFGGKRLIILDEADNIHGTADRGG 121
Query: 63 IAGIQQIAEKAKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVE 121
+ I I + P++L +N P + LE+ F + ++ L+ +C +E +
Sbjct: 122 MRAIAGIIKNTLQPIVLIANDIYGLTPTIRNLCLEIKFGSVQSRSMVPALKKVCESEDIL 181
Query: 122 LQQHLLVQLIESCRADIRKTIMHLQ 146
+ Q+ E D+R I LQ
Sbjct: 182 CSPDAIQQIAEGAGGDLRSAINDLQ 206
>sp|A4WGV3|RFCL_PYRAR Replication factor C large subunit OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcL PE=3 SV=1
Length = 422
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS---------NNITLPDSLDRL 95
++L ++VD + ED G + I +I E +K P+++T+N+ +I+L +L RL
Sbjct: 118 IVLFDEVDGLHVKEDAGGLEAIIEIIENSKVPIVMTANNPYDPRFRPLRDISLVVNLKRL 177
Query: 96 EVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151
++++ L+ IC +E + ++ L + +S D+R I LQ +
Sbjct: 178 S-------EEEVVEVLRRICTSEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLSG 226
>sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1 OS=Dictyostelium discoideum
GN=rfc1 PE=3 SV=1
Length = 1401
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 38 KSDNHVKPLILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDR-- 94
+++ +K I+++++D DRG IA I + +K+K P I N + SL
Sbjct: 962 QANKKIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCNDYYSSKVTSLRNHC 1021
Query: 95 LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK-G 153
+++ P + S L I E +++ +++ ++ S +DIR++I LQ ++K
Sbjct: 1022 MDLKLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQSINTLQMMSRSKRD 1081
Query: 154 YGKDKKLQKL 163
Y D Q L
Sbjct: 1082 YNNDNVTQSL 1091
>sp|A3CTR4|RFCL_METMJ Replication factor C large subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcL PE=3 SV=1
Length = 454
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 44 KPLILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLE--VSFT 100
+ LIL+++ D + DRG I +I A+ P+IL +N + +L L + V F
Sbjct: 96 RKLILLDEADNLHGQADRGGAKAIVEIIAAAQQPIILIAN-DYYSLTRELKAVTEPVQFR 154
Query: 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTI 142
+ ++ L+ ICAAE V L + D+R +
Sbjct: 155 ALQARSIVPRLRQICAAEGVACDPAALDDIANRAGGDMRAAV 196
>sp|Q9HPI4|RFCL_HALSA Replication factor C large subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcL PE=3
SV=2
Length = 471
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 44 KPLILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRL--EVSFT 100
+ L+L+++ D DRG A I ++ + A P++L +N + SL E+ F
Sbjct: 99 RKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQPIVLVAN-EYYEMSSSLRSACREIEFR 157
Query: 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ ++ L+ +C E V ++ L + E D+R + LQ
Sbjct: 158 DVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQ 203
>sp|B0R601|RFCL_HALS3 Replication factor C large subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcL PE=3 SV=1
Length = 471
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 44 KPLILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRL--EVSFT 100
+ L+L+++ D DRG A I ++ + A P++L +N + SL E+ F
Sbjct: 99 RKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQPIVLVAN-EYYEMSSSLRSACREIEFR 157
Query: 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ ++ L+ +C E V ++ L + E D+R + LQ
Sbjct: 158 DVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQ 203
>sp|Q0W3P4|RFCL_UNCMA Replication factor C large subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcL PE=3 SV=1
Length = 553
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 46 LILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNS-NNITLPDSLDRLEVSFTMPM 103
L+++++ D DRG A I + A PVIL +N ++ P L++ F +
Sbjct: 106 LVILDEADNLHGNYDRGGEAAIINVIRNASQPVILIANDMYAMSKPLRESALQIQFRAIL 165
Query: 104 PKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153
+ L+ +CA E ++ L+++ E D+R I LQ Q G
Sbjct: 166 STSVAKVLRKVCANEGLKCDPEALMKIAERTN-DLRSAINDLQAAAQGSG 214
>sp|A6VIW1|RFCL_METM7 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcL PE=3 SV=1
Length = 482
Score = 36.2 bits (82), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 38 KSDNHVKPLILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVILTSNSNN----ITLPDSL 92
KS + LI++++VD +DRG +A I ++ + A+ PVILT+N +TL +S+
Sbjct: 92 KSLTGKRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNSV 151
Query: 93 DRLEVS--FTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ + V T +P L+ I E E+ + ++ + D+R I LQ
Sbjct: 152 NLINVGSVHTNSIP----PVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAINDLQ 203
>sp|Q6M0E9|RFCL_METMP Replication factor C large subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcL PE=3 SV=1
Length = 486
Score = 35.8 bits (81), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 38 KSDNHVKPLILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVILTSNSNN----ITLPDSL 92
KS + LI++++VD +DRG +A I ++ + A+ PVILT+N +TL +S+
Sbjct: 92 KSLTGRRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNSV 151
Query: 93 DRLEVS--FTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ + V T +P L+ I E E+ + ++ + D+R I LQ
Sbjct: 152 NLINVGSVHTNSIP----PVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQ 203
>sp|Q2NH88|RFCL_METST Replication factor C large subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcL PE=3 SV=1
Length = 534
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLE-----VSF 99
L+++++VD + +D G + + + +K P+IL +N L ++ + F
Sbjct: 100 LLIMDEVDGISGRDDSGGARAVNETIKNSKQPIILMAND---AYSKRLTSIKPKCQGIKF 156
Query: 100 TMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGKDKK 159
T + + L+ ICA E +E L L + D+R I L+ N DKK
Sbjct: 157 TKVHTNSINAQLKRICAREDIEYDSEALYTLSKESNGDLRSAITSLEAIVDN-----DKK 211
Query: 160 LQK 162
+ K
Sbjct: 212 ITK 214
>sp|A0B6D7|RFCL_METTP Replication factor C large subunit OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rfcL PE=3 SV=1
Length = 467
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 44 KPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS-NNITLPDSLDRLEVSFTM 101
+ L+++++ D + DRG A I ++ + A PVIL +N NI P V F
Sbjct: 99 RRLVILDEADNLHGTYDRGGAAAILRVIKNATQPVILIANEYYNIEKPLRDACRGVQFRS 158
Query: 102 PMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ + S L+ IC +E +E + ++ + D+R I L+
Sbjct: 159 IRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGDLRSAINDLE 203
>sp|A9A6N2|RFCL_METM6 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcL PE=3 SV=1
Length = 484
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 38 KSDNHVKPLILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVILTSNSNN----ITLPDSL 92
KS + LI++++VD +DRG +A I ++ + A+ PVILT+N +TL +++
Sbjct: 92 KSITGRRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNNV 151
Query: 93 DRLEVS--FTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
+ + V T +P L+ I E E+ + ++ + D+R I LQ
Sbjct: 152 NLINVGSVHTNSIP----PVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAINDLQ 203
>sp|Q5V1F7|RFCL_HALMA Replication factor C large subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcL PE=3 SV=1
Length = 508
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 44 KPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDR--LEVSFT 100
+ L+++++ D + DRG I + ++A P+IL +N + + L ++ F
Sbjct: 98 RRLVIMDEADNIHGNADRGGARAITALVKEASQPMILIAN-EYYEMSNGLRNNCQDIEFR 156
Query: 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
P+ ++ L+ +C E VE + L +L E +R + LQ
Sbjct: 157 DVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGGLRGAVKDLQ 202
>sp|A6URV8|RFCL_METVS Replication factor C large subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcL PE=3 SV=1
Length = 492
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 38 KSDNHVKPLILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLE 96
KS + LI++++VD +DRG ++ I ++ + A+ PVILT +N++ P +L L
Sbjct: 92 KSLTGKRTLIVLDEVDGLSGNDDRGGVSEIIKVLKNAENPVILT--ANDVYKP-ALSSLR 148
Query: 97 VSFTMPMPKDLLSH-----LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146
S TM + ++ L+ I E E+ + ++ + D+R I LQ
Sbjct: 149 NSVTMVDAGSVHTNSIPPVLRKIALKEGFEIDEKVIKLISSHAGGDLRAAINDLQ 203
>sp|Q8ZYK3|RFCL_PYRAE Replication factor C large subunit OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcL PE=3 SV=1
Length = 422
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 17/116 (14%)
Query: 46 LILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNS---------NNITLPDSLDRL 95
++L ++VD + ED+G + I +I E AK P+I+T+N+ +I+L +L RL
Sbjct: 118 MVLFDEVDGLHVKEDKGGLEEIIEIIETAKIPIIMTANNPYDPKFRPLRDISLVVNLKRL 177
Query: 96 EVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151
++++ L+ IC +E + ++ L + +S D+R I LQ +
Sbjct: 178 S-------EEEVVEVLRRICTSEGAKCEEEALRSIAKSSMGDLRAAINDLQMYLSG 226
>sp|A7I781|RFCL_METB6 Replication factor C large subunit OS=Methanoregula boonei (strain
6A8) GN=rfcL PE=3 SV=1
Length = 481
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 41 NHVKPLILIEDVD-VFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLE-VS 98
+ LI++++ D + DRG I + + A+ P++L +N + R E V
Sbjct: 93 GSARKLIIMDEADNLQGTADRGGAKAILECIKNARQPIVLIANDLYGLAAELRLRCEPVQ 152
Query: 99 FTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145
F + + L+ IC++EK+ + + ++ ES D+R + L
Sbjct: 153 FRALPARSIAPRLKYICSSEKIACSESAVHEIAESAEGDMRSAVNML 199
>sp|A6Q7V0|RNY_SULNB Ribonuclease Y OS=Sulfurovum sp. (strain NBC37-1) GN=rny PE=3 SV=1
Length = 509
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 12 AAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFI 63
A + A + ++ ++++P DE+ ++GK ++K L ++ VD+ E G I
Sbjct: 191 AGEFAGERLINLVNLPSDEHKGRIIGKEGRNIKALEMLLGVDIVIDETPGVI 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,535,299
Number of Sequences: 539616
Number of extensions: 9136995
Number of successful extensions: 20231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 20073
Number of HSP's gapped (non-prelim): 238
length of query: 555
length of database: 191,569,459
effective HSP length: 123
effective length of query: 432
effective length of database: 125,196,691
effective search space: 54084970512
effective search space used: 54084970512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)