Query 008751
Match_columns 555
No_of_seqs 170 out of 1086
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 16:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1968 Replication factor C, 100.0 4.6E-29 1E-33 283.5 11.1 450 9-550 374-857 (871)
2 KOG1969 DNA replication checkp 99.9 1.6E-22 3.4E-27 223.6 15.2 144 8-154 342-520 (877)
3 KOG2035 Replication factor C, 99.8 7.2E-20 1.6E-24 185.8 13.3 167 43-242 127-296 (351)
4 KOG0991 Replication factor C, 99.8 1.2E-19 2.7E-24 180.9 6.8 136 17-155 78-225 (333)
5 KOG0989 Replication factor C, 99.8 8.2E-19 1.8E-23 179.9 9.3 134 18-154 89-240 (346)
6 PRK04195 replication factor C 99.8 6.1E-18 1.3E-22 182.4 16.1 146 8-153 55-211 (482)
7 PRK04132 replication factor C 99.7 7.9E-18 1.7E-22 192.1 14.6 140 10-152 584-739 (846)
8 PLN03025 replication factor C 99.7 4.1E-16 9E-21 159.5 13.0 139 10-151 52-207 (319)
9 PRK07003 DNA polymerase III su 99.5 8.3E-14 1.8E-18 157.3 13.6 133 18-153 88-230 (830)
10 PRK14956 DNA polymerase III su 99.4 5.2E-13 1.1E-17 145.1 11.5 127 17-147 89-225 (484)
11 KOG0990 Replication factor C, 99.4 1.7E-13 3.6E-18 141.8 7.1 150 18-170 94-264 (360)
12 PRK14960 DNA polymerase III su 99.4 6.1E-13 1.3E-17 148.8 11.2 132 17-151 86-227 (702)
13 PRK14958 DNA polymerase III su 99.4 1.3E-12 2.9E-17 142.9 10.8 131 18-151 88-228 (509)
14 PRK12323 DNA polymerase III su 99.4 1.4E-12 3E-17 145.9 10.6 133 18-153 93-235 (700)
15 COG0470 HolB ATPase involved i 99.4 5.3E-13 1.2E-17 133.4 5.5 121 18-152 74-207 (325)
16 PRK14964 DNA polymerase III su 99.4 3E-12 6.4E-17 139.7 11.6 139 8-150 74-223 (491)
17 PRK08451 DNA polymerase III su 99.4 5.4E-12 1.2E-16 138.9 13.7 135 12-149 80-223 (535)
18 PRK07994 DNA polymerase III su 99.3 8E-12 1.7E-16 140.1 12.5 126 18-147 88-223 (647)
19 PRK14951 DNA polymerase III su 99.3 8.6E-12 1.9E-16 139.3 11.5 130 18-151 93-233 (618)
20 PRK14952 DNA polymerase III su 99.3 1.4E-11 3.1E-16 136.9 12.7 130 18-151 87-226 (584)
21 PRK08691 DNA polymerase III su 99.3 1.2E-11 2.6E-16 139.3 11.8 126 18-147 88-223 (709)
22 PF03215 Rad17: Rad17 cell cyc 99.3 4.1E-11 9E-16 131.6 15.6 111 42-152 131-271 (519)
23 PRK14949 DNA polymerase III su 99.3 1.2E-11 2.5E-16 142.2 11.4 127 17-146 87-222 (944)
24 PRK14957 DNA polymerase III su 99.3 2.6E-11 5.6E-16 133.9 13.1 129 18-150 88-226 (546)
25 PRK14963 DNA polymerase III su 99.3 4.7E-11 1E-15 130.8 14.5 132 16-151 83-224 (504)
26 PRK14969 DNA polymerase III su 99.3 2E-11 4.3E-16 134.2 11.4 128 18-149 88-225 (527)
27 PRK07764 DNA polymerase III su 99.3 3.5E-11 7.6E-16 138.3 12.9 131 17-151 88-228 (824)
28 PRK14965 DNA polymerase III su 99.2 3.3E-11 7.2E-16 133.7 11.3 129 17-149 87-225 (576)
29 PRK00440 rfc replication facto 99.2 1.7E-10 3.7E-15 115.6 14.2 133 17-152 68-211 (319)
30 PRK14962 DNA polymerase III su 99.2 7.2E-11 1.6E-15 128.4 12.3 128 19-150 87-224 (472)
31 PHA02544 44 clamp loader, smal 99.2 1.3E-10 2.8E-15 117.6 12.9 140 9-151 60-216 (316)
32 PRK14961 DNA polymerase III su 99.2 1.2E-10 2.7E-15 121.9 12.6 129 18-150 88-226 (363)
33 PRK05563 DNA polymerase III su 99.2 1.2E-10 2.6E-15 129.0 12.7 135 12-149 82-225 (559)
34 PRK14971 DNA polymerase III su 99.2 1.3E-10 2.7E-15 130.1 12.9 129 17-149 89-227 (614)
35 PRK14959 DNA polymerase III su 99.2 8E-11 1.7E-15 131.6 11.3 130 17-149 87-225 (624)
36 PRK06645 DNA polymerase III su 99.2 1.7E-10 3.6E-15 126.6 12.9 130 17-150 96-235 (507)
37 TIGR00602 rad24 checkpoint pro 99.2 1.8E-10 3.9E-15 129.3 12.3 111 42-152 194-331 (637)
38 PRK09111 DNA polymerase III su 99.1 2.1E-10 4.6E-15 128.0 12.4 134 11-148 94-237 (598)
39 PRK06305 DNA polymerase III su 99.1 2.1E-10 4.6E-15 124.0 12.0 130 17-150 89-228 (451)
40 PRK14948 DNA polymerase III su 99.1 3.3E-10 7.1E-15 127.0 13.5 136 12-151 84-229 (620)
41 COG2812 DnaX DNA polymerase II 99.1 1.3E-10 2.8E-15 127.5 8.4 134 18-154 88-231 (515)
42 TIGR02397 dnaX_nterm DNA polym 99.1 9.6E-10 2.1E-14 112.4 12.3 131 16-150 84-224 (355)
43 PRK05896 DNA polymerase III su 99.1 5.3E-10 1.1E-14 124.7 10.9 132 17-152 87-228 (605)
44 PRK07133 DNA polymerase III su 99.0 1E-09 2.3E-14 124.4 11.7 131 15-149 84-224 (725)
45 PRK14950 DNA polymerase III su 99.0 1.5E-09 3.2E-14 120.8 12.7 136 11-150 82-227 (585)
46 PRK14970 DNA polymerase III su 99.0 1.9E-09 4.1E-14 112.1 12.3 132 16-151 75-216 (367)
47 PRK14953 DNA polymerase III su 99.0 1.9E-09 4.1E-14 117.8 12.3 129 18-150 88-226 (486)
48 PRK14954 DNA polymerase III su 99.0 1.6E-09 3.6E-14 121.4 12.0 130 17-150 95-234 (620)
49 KOG1970 Checkpoint RAD17-RFC c 99.0 3.2E-09 6.9E-14 116.5 13.3 144 9-152 127-323 (634)
50 PRK12402 replication factor C 99.0 4.4E-09 9.5E-14 106.5 13.5 108 43-153 125-235 (337)
51 PRK06647 DNA polymerase III su 99.0 1.6E-09 3.5E-14 120.3 11.1 128 16-147 86-223 (563)
52 PRK14955 DNA polymerase III su 99.0 1.9E-09 4.1E-14 114.4 10.0 130 16-149 94-233 (397)
53 PRK13342 recombination factor 98.6 2.2E-07 4.7E-12 99.1 12.4 140 9-151 53-203 (413)
54 PRK09112 DNA polymerase III su 98.6 3.4E-07 7.4E-12 96.5 10.8 101 42-147 140-243 (351)
55 PRK08727 hypothetical protein; 98.5 4.8E-07 1E-11 89.5 10.6 134 13-149 65-209 (233)
56 PRK13341 recombination factor 98.5 2.6E-07 5.6E-12 105.6 9.8 137 9-150 69-223 (725)
57 PRK08084 DNA replication initi 98.5 6E-07 1.3E-11 88.9 9.5 106 44-149 98-214 (235)
58 COG2256 MGS1 ATPase related to 98.4 1.1E-06 2.4E-11 94.1 10.4 139 9-153 65-221 (436)
59 PRK07399 DNA polymerase III su 98.4 9.7E-07 2.1E-11 91.7 9.4 101 42-148 123-225 (314)
60 TIGR00678 holB DNA polymerase 98.4 6.9E-07 1.5E-11 84.5 6.9 91 42-141 95-188 (188)
61 PRK08903 DnaA regulatory inact 98.3 8.7E-06 1.9E-10 79.1 13.3 126 15-149 68-204 (227)
62 TIGR03420 DnaA_homol_Hda DnaA 98.3 3.6E-06 7.9E-11 80.8 9.2 132 15-149 64-206 (226)
63 TIGR01128 holA DNA polymerase 98.2 1.1E-05 2.3E-10 80.9 12.3 132 17-151 18-160 (302)
64 PRK06893 DNA replication initi 98.2 7.6E-06 1.6E-10 80.7 11.0 106 43-149 91-208 (229)
65 TIGR00635 ruvB Holliday juncti 98.2 9E-06 2E-10 82.1 11.7 137 9-149 47-206 (305)
66 PRK06620 hypothetical protein; 98.2 1.4E-05 3.1E-10 78.6 11.6 104 43-149 85-194 (214)
67 PRK07940 DNA polymerase III su 98.2 5.6E-06 1.2E-10 88.8 8.7 96 42-145 116-214 (394)
68 PRK00080 ruvB Holliday junctio 98.1 1.9E-05 4.1E-10 81.6 11.7 135 9-147 68-225 (328)
69 PRK09087 hypothetical protein; 98.1 2.8E-05 6.1E-10 77.2 11.8 107 44-151 88-205 (226)
70 TIGR02881 spore_V_K stage V sp 98.0 1.6E-05 3.4E-10 79.6 8.9 135 18-152 75-238 (261)
71 PRK07471 DNA polymerase III su 97.9 4.5E-05 9.7E-10 81.1 10.4 98 42-146 140-240 (365)
72 PRK05564 DNA polymerase III su 97.9 3.1E-05 6.7E-10 79.5 8.8 97 42-145 92-191 (313)
73 PRK08769 DNA polymerase III su 97.9 3.1E-05 6.8E-10 81.0 8.9 96 42-146 112-210 (319)
74 PRK05707 DNA polymerase III su 97.9 3.2E-05 7E-10 81.0 9.0 98 42-146 105-205 (328)
75 PRK05642 DNA replication initi 97.9 0.00012 2.6E-09 72.8 12.2 105 44-149 98-213 (234)
76 PRK07993 DNA polymerase III su 97.9 2.6E-05 5.6E-10 81.9 7.5 97 42-146 107-206 (334)
77 TIGR00362 DnaA chromosomal rep 97.8 0.00019 4.1E-09 76.3 12.8 132 17-151 166-320 (405)
78 PRK00149 dnaA chromosomal repl 97.8 9.9E-05 2.1E-09 79.7 10.8 108 43-151 211-332 (450)
79 PRK06871 DNA polymerase III su 97.8 0.00016 3.4E-09 76.1 11.3 97 42-146 106-205 (325)
80 TIGR02928 orc1/cdc6 family rep 97.7 9.8E-05 2.1E-09 76.2 8.8 107 43-149 129-251 (365)
81 TIGR02902 spore_lonB ATP-depen 97.7 0.00019 4.1E-09 79.7 11.5 104 43-150 175-310 (531)
82 PRK08058 DNA polymerase III su 97.7 0.0001 2.2E-09 76.9 8.3 94 43-146 110-206 (329)
83 PRK12422 chromosomal replicati 97.7 0.00027 5.9E-09 77.0 11.1 106 43-149 202-318 (445)
84 PTZ00112 origin recognition co 97.7 0.00015 3.2E-09 84.7 9.2 104 45-151 871-988 (1164)
85 PF00308 Bac_DnaA: Bacterial d 97.6 0.00041 8.9E-09 68.5 11.0 103 43-146 97-210 (219)
86 PRK14088 dnaA chromosomal repl 97.6 0.00021 4.5E-09 77.6 8.2 108 43-151 194-315 (440)
87 CHL00181 cbbX CbbX; Provisiona 97.5 0.0002 4.3E-09 73.7 7.6 150 2-152 72-254 (287)
88 KOG2028 ATPase related to the 97.5 8.1E-05 1.8E-09 79.7 4.5 142 2-148 175-340 (554)
89 PRK14087 dnaA chromosomal repl 97.5 0.00057 1.2E-08 74.6 11.0 106 43-149 206-324 (450)
90 PRK00411 cdc6 cell division co 97.5 0.00044 9.6E-09 72.3 9.8 106 43-148 138-258 (394)
91 PRK06090 DNA polymerase III su 97.5 0.00032 7E-09 73.6 8.2 94 42-146 107-203 (319)
92 PF06144 DNA_pol3_delta: DNA p 97.5 0.00031 6.8E-09 64.8 7.2 131 18-149 30-171 (172)
93 PF13177 DNA_pol3_delta2: DNA 97.3 0.00039 8.5E-09 65.5 5.8 85 15-103 65-162 (162)
94 PRK06964 DNA polymerase III su 97.3 0.00099 2.2E-08 70.6 8.9 93 42-145 131-226 (342)
95 PRK07132 DNA polymerase III su 97.3 0.0012 2.7E-08 68.6 9.3 94 42-145 89-185 (299)
96 PRK05574 holA DNA polymerase I 97.3 0.0032 6.9E-08 64.4 12.2 131 17-150 48-194 (340)
97 TIGR02903 spore_lon_C ATP-depe 97.2 0.0031 6.7E-08 71.4 12.7 103 43-149 265-399 (615)
98 PF05496 RuvB_N: Holliday junc 97.2 0.0021 4.7E-08 65.0 10.2 135 8-148 66-225 (233)
99 TIGR02880 cbbX_cfxQ probable R 97.2 0.00088 1.9E-08 68.7 7.3 152 2-153 71-254 (284)
100 TIGR00763 lon ATP-dependent pr 97.1 0.0019 4.1E-08 74.8 10.2 127 8-134 363-534 (775)
101 PRK14086 dnaA chromosomal repl 97.1 0.0034 7.4E-08 71.3 11.6 104 43-147 377-491 (617)
102 PRK08485 DNA polymerase III su 97.1 0.00071 1.5E-08 67.2 5.4 96 47-146 58-169 (206)
103 PLN00020 ribulose bisphosphate 97.1 0.0019 4.1E-08 69.7 8.6 128 7-136 163-330 (413)
104 PRK06585 holA DNA polymerase I 97.0 0.0043 9.2E-08 64.3 10.8 127 18-151 52-191 (343)
105 PRK07276 DNA polymerase III su 97.0 0.0022 4.8E-08 66.6 8.6 93 42-145 103-198 (290)
106 PRK14700 recombination factor 97.0 0.0022 4.8E-08 67.0 8.4 62 89-150 25-93 (300)
107 PF00004 AAA: ATPase family as 97.0 0.00058 1.3E-08 59.3 3.4 91 9-99 15-128 (132)
108 PRK07452 DNA polymerase III su 97.0 0.0069 1.5E-07 62.3 11.7 134 17-151 32-179 (326)
109 PRK05917 DNA polymerase III su 96.8 0.0032 7E-08 65.5 7.6 80 42-139 94-176 (290)
110 PF06068 TIP49: TIP49 C-termin 96.5 0.0075 1.6E-07 65.0 7.9 102 44-148 279-395 (398)
111 PRK05818 DNA polymerase III su 96.4 0.0086 1.9E-07 61.6 7.4 95 42-148 87-194 (261)
112 CHL00176 ftsH cell division pr 96.3 0.013 2.8E-07 66.9 9.0 142 8-150 232-404 (638)
113 PRK10787 DNA-binding ATP-depen 96.3 0.026 5.7E-07 65.9 11.5 136 9-145 366-551 (784)
114 TIGR03015 pepcterm_ATPase puta 96.3 0.016 3.4E-07 57.3 8.4 102 43-147 123-241 (269)
115 PRK03992 proteasome-activating 96.3 0.011 2.5E-07 63.1 8.0 142 8-151 181-354 (389)
116 PTZ00454 26S protease regulato 96.3 0.012 2.6E-07 63.5 8.1 144 8-152 195-369 (398)
117 COG0593 DnaA ATPase involved i 96.2 0.029 6.3E-07 61.1 10.4 103 44-147 176-289 (408)
118 CHL00195 ycf46 Ycf46; Provisio 96.1 0.014 3.1E-07 64.7 7.3 142 8-149 275-444 (489)
119 TIGR01242 26Sp45 26S proteasom 96.0 0.016 3.5E-07 61.0 7.1 143 8-150 172-344 (364)
120 PRK08699 DNA polymerase III su 96.0 0.0098 2.1E-07 62.5 5.3 69 42-113 112-183 (325)
121 PRK07914 hypothetical protein; 95.8 0.076 1.6E-06 55.1 11.1 129 17-150 37-176 (320)
122 COG1222 RPT1 ATP-dependent 26S 95.8 0.021 4.6E-07 61.4 7.0 146 6-151 199-374 (406)
123 COG1224 TIP49 DNA helicase TIP 95.8 0.053 1.2E-06 58.6 9.9 100 44-146 292-406 (450)
124 TIGR01241 FtsH_fam ATP-depende 95.8 0.013 2.8E-07 64.4 5.4 141 8-149 104-275 (495)
125 PRK05629 hypothetical protein; 95.7 0.12 2.6E-06 53.5 11.9 129 17-150 37-174 (318)
126 COG1474 CDC6 Cdc6-related prot 95.5 0.065 1.4E-06 57.4 9.3 107 43-152 123-245 (366)
127 KOG2680 DNA helicase TIP49, TB 95.2 0.11 2.5E-06 55.2 9.8 106 44-152 289-409 (454)
128 PTZ00361 26 proteosome regulat 94.9 0.029 6.3E-07 61.5 4.8 143 8-151 233-406 (438)
129 PRK08487 DNA polymerase III su 94.6 0.45 9.8E-06 49.7 12.4 117 33-153 62-186 (328)
130 PRK06581 DNA polymerase III su 94.4 0.098 2.1E-06 54.0 6.8 69 42-113 88-159 (263)
131 KOG1942 DNA helicase, TBP-inte 93.7 0.37 8E-06 51.3 9.4 101 43-146 296-412 (456)
132 PRK10733 hflB ATP-dependent me 93.4 0.26 5.6E-06 56.5 8.4 144 8-152 201-375 (644)
133 TIGR01243 CDC48 AAA family ATP 93.3 0.14 3E-06 59.2 6.3 138 8-147 503-670 (733)
134 TIGR02639 ClpA ATP-dependent C 93.1 0.13 2.8E-06 59.5 5.6 134 17-150 238-403 (731)
135 TIGR01243 CDC48 AAA family ATP 93.0 0.3 6.6E-06 56.4 8.3 129 8-138 228-381 (733)
136 TIGR02639 ClpA ATP-dependent C 92.8 0.66 1.4E-05 53.8 10.7 133 8-143 500-705 (731)
137 KOG0743 AAA+-type ATPase [Post 92.6 0.56 1.2E-05 51.9 9.2 138 9-149 252-431 (457)
138 PF01637 Arch_ATPase: Archaeal 92.0 1 2.2E-05 42.5 9.1 97 44-141 119-231 (234)
139 KOG0727 26S proteasome regulat 91.8 0.52 1.1E-05 49.4 7.4 114 8-121 205-345 (408)
140 KOG0733 Nuclear AAA ATPase (VC 91.5 1.1 2.4E-05 51.6 10.1 131 7-138 238-396 (802)
141 PRK15115 response regulator Gl 91.1 2.2 4.7E-05 45.7 11.6 106 43-151 228-366 (444)
142 KOG2227 Pre-initiation complex 91.1 0.21 4.5E-06 55.6 3.9 101 44-147 257-374 (529)
143 cd00009 AAA The AAA+ (ATPases 90.9 0.2 4.3E-06 42.7 2.9 75 11-85 38-131 (151)
144 PRK11034 clpA ATP-dependent Cl 90.6 1.1 2.5E-05 52.5 9.5 132 9-143 505-709 (758)
145 COG0466 Lon ATP-dependent Lon 90.1 1.6 3.5E-05 50.9 9.9 124 10-134 368-537 (782)
146 TIGR03345 VI_ClpV1 type VI sec 89.9 1.6 3.4E-05 51.9 10.0 106 42-150 667-828 (852)
147 COG0464 SpoVK ATPases of the A 89.9 1.1 2.3E-05 49.3 8.0 137 7-143 291-456 (494)
148 TIGR02640 gas_vesic_GvpN gas v 89.8 2 4.4E-05 43.5 9.5 118 9-134 38-212 (262)
149 TIGR02974 phageshock_pspF psp 89.8 1.6 3.5E-05 46.0 9.1 107 43-152 93-233 (329)
150 PRK05907 hypothetical protein; 89.6 1.7 3.7E-05 45.8 9.0 113 35-151 62-184 (311)
151 TIGR03345 VI_ClpV1 type VI sec 89.6 0.71 1.5E-05 54.7 6.9 107 43-149 280-407 (852)
152 KOG2004 Mitochondrial ATP-depe 89.0 1.2 2.6E-05 52.1 7.8 142 10-151 456-644 (906)
153 TIGR03689 pup_AAA proteasome A 88.9 0.7 1.5E-05 52.0 5.9 82 43-125 289-387 (512)
154 KOG0651 26S proteasome regulat 88.8 0.92 2E-05 48.6 6.3 87 6-92 180-289 (388)
155 PRK11034 clpA ATP-dependent Cl 88.6 1.3 2.8E-05 52.0 7.9 108 43-150 278-407 (758)
156 COG1223 Predicted ATPase (AAA+ 88.3 0.72 1.6E-05 48.5 5.1 134 7-142 166-327 (368)
157 PRK13695 putative NTPase; Prov 87.8 1.9 4E-05 40.5 7.1 70 43-113 96-170 (174)
158 PRK05342 clpX ATP-dependent pr 87.2 2.9 6.3E-05 45.7 9.2 65 8-72 124-213 (412)
159 CHL00195 ycf46 Ycf46; Provisio 86.9 4.6 0.0001 45.3 10.6 98 44-144 82-188 (489)
160 KOG0728 26S proteasome regulat 86.8 1.3 2.8E-05 46.5 5.8 105 6-112 195-328 (404)
161 TIGR02915 PEP_resp_reg putativ 86.1 4.5 9.8E-05 43.3 9.8 106 43-151 233-371 (445)
162 PRK10365 transcriptional regul 85.7 4.7 0.0001 42.9 9.7 106 43-151 233-371 (441)
163 COG1466 HolA DNA polymerase II 85.4 6.4 0.00014 41.4 10.3 113 34-151 66-189 (334)
164 KOG0730 AAA+-type ATPase [Post 85.4 2.3 4.9E-05 49.2 7.4 128 7-136 233-384 (693)
165 CHL00095 clpC Clp protease ATP 84.9 3.1 6.7E-05 49.1 8.5 131 9-142 556-774 (821)
166 KOG0737 AAA+-type ATPase [Post 84.0 1.1 2.5E-05 48.5 4.1 131 9-139 144-301 (386)
167 PF13401 AAA_22: AAA domain; P 84.0 0.4 8.8E-06 41.8 0.6 37 45-83 89-125 (131)
168 PRK05022 anaerobic nitric oxid 83.8 8.7 0.00019 42.8 11.0 106 43-151 281-419 (509)
169 KOG0733 Nuclear AAA ATPase (VC 83.6 1.9 4E-05 49.9 5.7 145 6-150 559-734 (802)
170 TIGR03346 chaperone_ClpB ATP-d 83.5 7.5 0.00016 46.2 10.9 103 43-148 667-821 (852)
171 TIGR01817 nifA Nif-specific re 82.9 6.3 0.00014 43.9 9.5 106 43-151 290-427 (534)
172 PRK11608 pspF phage shock prot 82.8 7 0.00015 41.1 9.3 106 43-151 100-239 (326)
173 TIGR02329 propionate_PrpR prop 82.3 6.7 0.00014 44.3 9.4 105 43-150 307-448 (526)
174 PRK11388 DNA-binding transcrip 81.8 7.9 0.00017 44.1 9.9 106 43-151 416-553 (638)
175 PRK10865 protein disaggregatio 81.8 7.1 0.00015 46.6 9.8 98 43-143 670-822 (857)
176 PRK11361 acetoacetate metaboli 80.7 19 0.00042 38.5 11.9 106 43-151 237-375 (457)
177 PRK15429 formate hydrogenlyase 79.6 12 0.00027 43.1 10.6 106 43-151 470-608 (686)
178 PRK10820 DNA-binding transcrip 78.7 13 0.00028 41.7 10.1 105 43-150 298-435 (520)
179 KOG1514 Origin recognition com 78.4 6.8 0.00015 45.9 7.9 109 42-155 507-631 (767)
180 TIGR03346 chaperone_ClpB ATP-d 77.9 4.4 9.6E-05 48.1 6.5 109 43-151 266-395 (852)
181 smart00382 AAA ATPases associa 76.9 7.7 0.00017 32.3 6.1 40 44-83 79-125 (148)
182 TIGR01818 ntrC nitrogen regula 72.6 17 0.00036 39.2 8.7 105 44-151 229-366 (463)
183 PF07693 KAP_NTPase: KAP famil 72.6 10 0.00022 38.5 6.8 73 43-115 172-263 (325)
184 PRK15424 propionate catabolism 71.0 23 0.00049 40.4 9.6 105 43-150 322-463 (538)
185 CHL00095 clpC Clp protease ATP 70.9 12 0.00026 44.3 7.7 135 17-151 235-400 (821)
186 PF01695 IstB_IS21: IstB-like 70.5 2.1 4.4E-05 41.3 1.2 82 2-84 60-150 (178)
187 TIGR01587 cas3_core CRISPR-ass 70.5 7.6 0.00016 40.3 5.4 39 45-83 126-164 (358)
188 CHL00206 ycf2 Ycf2; Provisiona 68.0 16 0.00036 47.4 8.3 111 43-153 1732-1861(2281)
189 TIGR00382 clpX endopeptidase C 68.0 20 0.00044 39.5 8.2 64 8-71 132-220 (413)
190 PF05621 TniB: Bacterial TniB 68.0 4.5 9.7E-05 42.9 3.1 105 43-147 145-264 (302)
191 PF05729 NACHT: NACHT domain 67.7 13 0.00028 33.2 5.6 73 43-115 81-163 (166)
192 COG2255 RuvB Holliday junction 66.9 41 0.00088 36.2 9.7 136 9-148 69-227 (332)
193 PRK10923 glnG nitrogen regulat 66.6 40 0.00087 36.5 10.1 106 43-151 232-370 (469)
194 KOG0652 26S proteasome regulat 65.8 19 0.00042 38.3 7.1 80 43-124 264-362 (424)
195 KOG0738 AAA+-type ATPase [Post 65.7 5.4 0.00012 44.1 3.2 140 6-146 259-429 (491)
196 PHA02244 ATPase-like protein 65.5 13 0.00027 40.8 5.9 97 8-107 135-266 (383)
197 COG1618 Predicted nucleotide k 64.4 16 0.00035 36.1 5.9 71 44-115 101-175 (179)
198 PF13173 AAA_14: AAA domain 63.7 17 0.00036 32.5 5.5 92 11-107 21-127 (128)
199 smart00350 MCM minichromosome 63.5 63 0.0014 36.3 11.1 91 43-136 300-432 (509)
200 PRK08181 transposase; Validate 63.4 6.1 0.00013 40.9 3.0 78 6-84 123-209 (269)
201 PF14516 AAA_35: AAA-like doma 62.6 44 0.00096 35.2 9.3 92 43-138 127-233 (331)
202 PF03266 NTPase_1: NTPase; In 62.1 8.1 0.00018 37.0 3.4 41 43-84 95-135 (168)
203 KOG0735 AAA+-type ATPase [Post 61.6 35 0.00075 40.7 8.7 95 42-136 493-607 (952)
204 PF00931 NB-ARC: NB-ARC domain 59.2 12 0.00026 37.2 4.2 88 43-137 101-195 (287)
205 TIGR02030 BchI-ChlI magnesium 59.1 43 0.00092 35.9 8.5 108 37-147 125-284 (337)
206 KOG0740 AAA+-type ATPase [Post 58.5 11 0.00023 42.0 3.9 139 8-147 202-369 (428)
207 PRK10865 protein disaggregatio 57.1 17 0.00038 43.4 5.7 93 43-135 271-378 (857)
208 cd01120 RecA-like_NTPases RecA 56.4 10 0.00022 33.4 2.8 45 42-86 84-139 (165)
209 PF07724 AAA_2: AAA domain (Cd 55.6 15 0.00033 35.2 4.0 64 9-72 20-105 (171)
210 PRK13407 bchI magnesium chelat 55.5 38 0.00082 36.3 7.3 59 43-104 128-204 (334)
211 PF05673 DUF815: Protein of un 55.2 40 0.00088 35.0 7.2 109 15-129 78-221 (249)
212 COG1221 PspF Transcriptional r 53.7 54 0.0012 36.3 8.3 107 43-152 173-309 (403)
213 TIGR01650 PD_CobS cobaltochela 52.9 96 0.0021 33.4 9.8 126 9-140 81-257 (327)
214 COG0465 HflB ATP-dependent Zn 52.9 29 0.00063 40.2 6.3 142 6-150 197-371 (596)
215 PRK05201 hslU ATP-dependent pr 51.9 21 0.00045 39.9 4.8 92 43-134 249-380 (443)
216 PRK12377 putative replication 51.6 18 0.00039 37.0 4.1 70 14-84 126-206 (248)
217 KOG0726 26S proteasome regulat 50.4 29 0.00062 37.6 5.3 64 42-105 277-359 (440)
218 TIGR02031 BchD-ChlD magnesium 49.8 40 0.00088 38.6 6.9 106 39-147 80-233 (589)
219 KOG0732 AAA+-type ATPase conta 49.1 89 0.0019 38.7 9.7 100 42-141 362-477 (1080)
220 PF00270 DEAD: DEAD/DEAH box h 49.1 7.8 0.00017 35.0 0.9 41 43-83 119-161 (169)
221 KOG0731 AAA+-type ATPase conta 46.4 56 0.0012 39.0 7.4 147 6-152 358-536 (774)
222 KOG2170 ATPase of the AAA+ sup 44.7 65 0.0014 34.9 6.9 107 42-153 177-304 (344)
223 COG0714 MoxR-like ATPases [Gen 44.7 1.3E+02 0.0029 31.3 9.3 101 8-111 59-199 (329)
224 PF12774 AAA_6: Hydrolytic ATP 44.1 64 0.0014 32.7 6.6 115 9-131 49-193 (231)
225 TIGR00390 hslU ATP-dependent p 43.9 31 0.00067 38.6 4.6 92 43-134 247-378 (441)
226 KOG0730 AAA+-type ATPase [Post 42.0 56 0.0012 38.4 6.4 146 7-154 483-657 (693)
227 PRK13765 ATP-dependent proteas 41.4 80 0.0017 36.9 7.6 89 43-134 226-352 (637)
228 PRK07952 DNA replication prote 41.0 53 0.0011 33.6 5.5 72 10-84 117-205 (244)
229 cd03227 ABC_Class2 ABC-type Cl 40.9 55 0.0012 30.5 5.3 42 43-85 99-142 (162)
230 cd00046 DEXDc DEAD-like helica 38.7 29 0.00064 28.9 2.8 18 43-60 103-120 (144)
231 TIGR00764 lon_rel lon-related 38.0 86 0.0019 36.3 7.2 88 43-133 217-342 (608)
232 COG4098 comFA Superfamily II D 38.0 29 0.00062 38.1 3.2 43 42-84 201-244 (441)
233 CHL00081 chlI Mg-protoporyphyr 37.6 1.4E+02 0.003 32.4 8.3 103 42-147 143-297 (350)
234 PRK08116 hypothetical protein; 37.4 56 0.0012 33.6 5.1 74 10-84 132-221 (268)
235 COG2204 AtoC Response regulato 37.1 2.1E+02 0.0046 32.4 9.8 107 43-152 235-374 (464)
236 PRK09183 transposase/IS protei 36.4 41 0.0009 34.3 3.9 82 2-84 115-206 (259)
237 KOG0331 ATP-dependent RNA heli 35.9 24 0.00053 40.1 2.4 31 43-75 239-269 (519)
238 smart00487 DEXDc DEAD-like hel 35.3 32 0.0007 30.7 2.6 41 43-85 129-171 (201)
239 PF13304 AAA_21: AAA domain; P 34.5 48 0.001 30.2 3.7 38 45-85 259-300 (303)
240 KOG0736 Peroxisome assembly fa 34.3 1.3E+02 0.0028 36.4 7.8 128 8-136 447-596 (953)
241 PLN03210 Resistant to P. syrin 34.2 97 0.0021 38.3 7.2 69 42-116 295-365 (1153)
242 PF02463 SMC_N: RecF/RecN/SMC 34.0 67 0.0015 31.0 4.8 40 43-84 158-199 (220)
243 PRK06526 transposase; Provisio 33.6 79 0.0017 32.4 5.4 41 43-84 159-201 (254)
244 PF14532 Sigma54_activ_2: Sigm 33.6 51 0.0011 29.8 3.7 39 43-84 69-110 (138)
245 TIGR02442 Cob-chelat-sub cobal 32.4 1.2E+02 0.0025 35.2 7.1 27 43-72 126-152 (633)
246 PF00488 MutS_V: MutS domain V 31.8 82 0.0018 31.8 5.1 44 42-85 121-167 (235)
247 KOG0734 AAA+-type ATPase conta 31.5 76 0.0016 36.9 5.2 143 6-153 351-525 (752)
248 TIGR00174 miaA tRNA isopenteny 30.5 2.3E+02 0.0049 29.9 8.3 86 62-154 77-170 (287)
249 cd00268 DEADc DEAD-box helicas 29.9 47 0.001 31.2 2.9 40 43-84 143-184 (203)
250 PF07728 AAA_5: AAA domain (dy 29.6 45 0.00097 29.7 2.6 61 9-72 16-91 (139)
251 PRK13539 cytochrome c biogenes 29.5 1.1E+02 0.0025 29.4 5.5 58 42-104 144-203 (207)
252 PF03474 DMA: DMRTA motif; In 29.3 72 0.0016 24.5 3.2 23 123-145 16-38 (39)
253 PRK00091 miaA tRNA delta(2)-is 29.0 1.2E+02 0.0027 32.0 6.1 85 63-154 83-175 (307)
254 KOG0342 ATP-dependent RNA heli 28.4 51 0.0011 37.6 3.2 87 45-151 232-327 (543)
255 PF02845 CUE: CUE domain; Int 28.4 92 0.002 23.1 3.7 25 121-145 14-38 (42)
256 COG0497 RecN ATPase involved i 28.3 94 0.002 35.9 5.3 79 44-128 454-546 (557)
257 PF07652 Flavi_DEAD: Flaviviru 28.0 96 0.0021 30.0 4.6 41 43-83 95-135 (148)
258 TIGR01277 thiQ thiamine ABC tr 27.8 1.2E+02 0.0026 29.3 5.4 44 42-85 145-190 (213)
259 COG1239 ChlI Mg-chelatase subu 27.5 2.4E+02 0.0051 31.7 8.0 100 43-147 144-262 (423)
260 PTZ00110 helicase; Provisional 27.2 50 0.0011 37.3 3.0 29 43-73 277-305 (545)
261 PRK04841 transcriptional regul 25.9 3.4E+02 0.0075 31.7 9.5 94 43-141 121-222 (903)
262 smart00546 CUE Domain that may 25.5 1.1E+02 0.0025 22.6 3.7 25 121-145 15-39 (43)
263 cd03301 ABC_MalK_N The N-termi 25.4 1.4E+02 0.0031 28.6 5.4 43 43-85 148-192 (213)
264 PF00493 MCM: MCM2/3/5 family 25.4 1E+02 0.0023 32.6 4.8 39 43-84 121-174 (331)
265 KOG0729 26S proteasome regulat 25.4 1.3E+02 0.0028 32.5 5.3 141 6-149 225-398 (435)
266 cd03300 ABC_PotA_N PotA is an 25.3 1.4E+02 0.003 29.3 5.4 44 42-85 147-192 (232)
267 cd03239 ABC_SMC_head The struc 24.5 1.5E+02 0.0033 28.4 5.3 42 43-85 116-159 (178)
268 PRK04537 ATP-dependent RNA hel 24.0 51 0.0011 37.6 2.3 36 44-81 160-199 (572)
269 TIGR02562 cas3_yersinia CRISPR 23.5 1.1E+02 0.0023 38.1 4.9 42 43-84 593-634 (1110)
270 PRK13406 bchD magnesium chelat 23.5 4.5E+02 0.0098 30.5 9.7 102 43-147 93-225 (584)
271 PRK09694 helicase Cas3; Provis 23.1 1E+02 0.0023 37.3 4.7 41 43-83 439-479 (878)
272 PTZ00424 helicase 45; Provisio 22.7 63 0.0014 34.0 2.6 39 43-83 170-210 (401)
273 TIGR02982 heterocyst_DevA ABC 22.7 1.8E+02 0.0038 28.3 5.5 44 42-85 158-203 (220)
274 PRK08939 primosomal protein Dn 22.5 83 0.0018 33.2 3.4 76 8-84 172-261 (306)
275 PRK04837 ATP-dependent RNA hel 22.5 66 0.0014 34.6 2.7 29 43-73 157-185 (423)
276 PLN00206 DEAD-box ATP-dependen 22.4 60 0.0013 36.3 2.4 37 43-81 270-307 (518)
277 PF00158 Sigma54_activat: Sigm 22.2 1E+02 0.0022 29.5 3.7 38 43-83 93-143 (168)
278 PRK04296 thymidine kinase; Pro 21.9 1.4E+02 0.0031 28.8 4.6 40 43-85 78-117 (190)
279 cd03221 ABCF_EF-3 ABCF_EF-3 E 21.9 2.2E+02 0.0047 26.1 5.7 42 42-85 87-128 (144)
280 cd03223 ABCD_peroxisomal_ALDP 21.8 2E+02 0.0044 26.9 5.5 41 43-85 109-149 (166)
281 COG0647 NagD Predicted sugar p 21.7 1.4E+02 0.003 31.4 4.7 42 43-86 7-52 (269)
282 PRK11192 ATP-dependent RNA hel 21.6 67 0.0014 34.6 2.5 29 43-73 147-175 (434)
283 COG1203 CRISPR-associated heli 21.3 67 0.0014 37.8 2.6 42 44-85 339-381 (733)
284 TIGR01166 cbiO cobalt transpor 21.0 1.9E+02 0.004 27.4 5.2 42 43-85 145-188 (190)
285 PRK06921 hypothetical protein; 21.0 1.6E+02 0.0034 30.4 5.0 73 10-84 135-225 (266)
286 PRK10590 ATP-dependent RNA hel 20.9 67 0.0014 35.2 2.4 28 43-72 149-176 (456)
287 cd08316 Death_FAS_TNFRSF6 Deat 20.8 2.3E+02 0.0049 25.4 5.3 49 106-154 6-65 (97)
288 PRK13538 cytochrome c biogenes 20.7 2E+02 0.0044 27.5 5.5 42 42-85 146-190 (204)
289 cd03298 ABC_ThiQ_thiamine_tran 20.7 2E+02 0.0043 27.6 5.3 44 42-85 145-190 (211)
290 PRK11776 ATP-dependent RNA hel 20.7 68 0.0015 34.9 2.4 29 43-73 147-175 (460)
291 TIGR03608 L_ocin_972_ABC putat 20.6 2E+02 0.0042 27.4 5.3 43 42-85 151-195 (206)
292 cd03216 ABC_Carb_Monos_I This 20.5 2.1E+02 0.0045 26.7 5.3 43 42-85 99-143 (163)
293 PF00910 RNA_helicase: RNA hel 20.3 1.8E+02 0.004 25.3 4.6 30 43-72 49-79 (107)
294 PRK13634 cbiO cobalt transport 20.1 1.9E+02 0.0042 29.7 5.4 43 43-85 163-207 (290)
No 1
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.96 E-value=4.6e-29 Score=283.55 Aligned_cols=450 Identities=18% Similarity=0.147 Sum_probs=319.9
Q ss_pred hhHHHhhCCCceEEEeCCCcccc------------cccccccCC--------CCCCcEEEEeCCCCCCcccHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN------------SHGVMGKSD--------NHVKPLILIEDVDVFFPEDRGFIAGIQQ 68 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r------------n~~v~gsl~--------~~kkkLILiDEVD~Lf~eDrGf~sAL~~ 68 (555)
.+++|+++||+|+|+||+|.|++ ++.+.+++. .....||||||||+|+.+|||+|++|..
T Consensus 374 ~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~ 453 (871)
T KOG1968|consen 374 AHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSS 453 (871)
T ss_pred HhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHH
Confidence 46889999999999999998854 234444330 1234599999999999999999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCcCccc--eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 69 IAEKAKGPVILTSNSNNITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 69 liekSKrPIILtCND~n~~L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
+++++++||||||||.+.+..+.+. |+.|+|++|....+..|++.||.+|+++|+++.++.+++.++||||++||+||
T Consensus 454 l~~ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq 533 (871)
T KOG1968|consen 454 LCKKSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQ 533 (871)
T ss_pred HHHhccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHh
Confidence 9999999999999999976666665 69999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC-------CCcccccccccCCCCCCcccccccC-CCccCCCC-CchhHHHHHHHHHhhhhhhhcccchhhcccc
Q 008751 147 FWCQNKG-------YGKDKKLQKLYVPELFDPDAGHHML-PKKIPWGF-PSQLSELVVKEIMKSLSLMEENSTLRELSEG 217 (555)
Q Consensus 147 f~s~s~~-------~~~~k~~~k~~~~~pFD~i~g~~l~-p~i~p~~~-P~~L~el~l~Ei~~si~~~ee~~~~le~~e~ 217 (555)
||+.... ....+.+.+.....+|| .+..++. .....-.. --.=.++++.++..+.++
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~L~~~~~~s~~~~~~~k~~~~~ed~~~~p~~------------- 599 (871)
T KOG1968|consen 534 FWSLSKPAELPKKKGTPIKTSKKNITVKDFD-AAEGLLDISRVASEETSNQSKAELYFEDYSISPLK------------- 599 (871)
T ss_pred hhhccchhhhccccCccccccccccccchhH-HHhhhccHhhhhhhhhhccchHHHhccccccchhh-------------
Confidence 9977632 22223355777778888 4444443 01100000 000033444444333333
Q ss_pred CCCCCCCCCCcCCCCCCcchHHHHHHhhccCCccCCCccccccccCccccCCCCCCCcccccccccccceeecCCCchhh
Q 008751 218 EGHDEMPSNQDMHNNPADSVEAKKEEMLNMNSSVHTNNELEDPLGNECEISNLPHTPVSFSRKNNRRKFKVVASSDSEDE 297 (555)
Q Consensus 218 l~~~~~~n~l~~~~~~~d~~~~~k~~~l~~~~s~~~~~e~~~~~~~~~e~~~~~~~p~~~~~~~~r~k~~~v~~s~s~d~ 297 (555)
+++|++.... .+|- .+..++++.+.+.|.++.....|..+.+...+.++.++...+|.++
T Consensus 600 ----v~~n~~~~~~----------~~~~------~~~~~l~~~~~~ad~is~~d~~~~~~r~~~~~~~L~~~~a~~s~~~ 659 (871)
T KOG1968|consen 600 ----VQENYLQVLP----------RSMK------QILDELEDVSEAADSISLGDLRPKSIRGPELDWKLNPLHAVDSKVL 659 (871)
T ss_pred ----cchhhhcccc----------hhhh------hhHHHHHHHhhhhhhhhhhhhcchhhcCccchhhhhhhhhhhhhhc
Confidence 4444432221 1221 4667888888888889999999999999999899999988888887
Q ss_pred hhhCCCcccccccccccccccCCCCCccccc-ccCCCCCCCcccCCchhhhccccccccccccccceee-eeeeeccccc
Q 008751 298 LIRNKSPVAERDINSKFLSENHSRFPSHFSN-AQNCKNPPIDKLHYPLKEKLEGSHYLCSEVANDLQIG-TYVSVDISCV 375 (555)
Q Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~q~~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~~i~-t~~s~~~scv 375 (555)
++. .+.+|... .-.||. |.. +-.|. .... .+. --.+..+++.
T Consensus 660 p~~---~~~~~~~~-------~i~f~~-~~~~~sk~~----------~~~~---------------~l~el~~h~~~~~s 703 (871)
T KOG1968|consen 660 PAS---KVGGHLLF-------RLGFPQ-WLGENSKSG----------KLKR---------------FLQELLPHTRLKQS 703 (871)
T ss_pred chh---hhhhcccc-------cccccc-ccCcccccc----------chhH---------------HHHHhchhhhhhhc
Confidence 766 45555422 222333 322 22222 1111 111 3345567889
Q ss_pred cCCcccccccccCCcccccccccccccccceeeeeecccccCCCCcccCcchhhccCCCChhhHHHHHHHhccCCccccc
Q 008751 376 PESSFVPETDIDNGAELLSGKECSGCVAEAVEVSVANEFDLNLPPVGADNNSMLEMHRNPDMLEKFCAVIAESSHMEEVE 455 (555)
Q Consensus 376 pess~~~e~~~~~~~e~~~~~vs~g~~~~~~~vs~~n~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 455 (555)
|...++++.-..-..++.......++..+ .+++-. .+.......|-+..+-|.++......+..
T Consensus 704 ~~~~~~~~~y~~i~~~~~~~~~~~~~~d~-------------~p~~i~---~~vdy~~~~ed~~~i~Ei~~~~~~~~~~~ 767 (871)
T KOG1968|consen 704 ANKARVRESYNPISRQFSPVPLALQSKDG-------------KPSAIE---SMVDYDLINEDLDGISEIIAAPGEAKVPN 767 (871)
T ss_pred cchhhhhhhhhhhhhhccCCccccccCCC-------------CchhHH---hhhhhhhhhhhhhhHHHHhhccccccchh
Confidence 99999999999888888888888888742 112111 12333566677778888888877766666
Q ss_pred ccccchhcccccccccccccccccccccchh-hccchhHHHHHHHHHHHHHHccccccccchhhcCCChhhHHHhhhccc
Q 008751 456 DSQNEHVETIPRVYQLMDECSRMDFKRRSKL-EELRSQEAIDLVRESWKKLRDGNTDLRQYATLEKPNAFQIIKLTHGMC 534 (555)
Q Consensus 456 d~~~e~~~~~~~~~~~mdecsr~df~~~~~~-~~~~~~~~~~~vq~~w~kl~~~~~dl~~~~~~e~~~a~~~~~l~~~~s 534 (555)
+.. +......-+.++-++|.++.|....+- .+.....-...++..|.+...-.++.. ..++-+.+...+++++.+.
T Consensus 768 ~~i-~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~l~~~~~i~ 844 (871)
T KOG1968|consen 768 KKI-EGTVKAVFTRTYKKLTEELRFFGQCKIRWKNAELSSAKREDLELGKGAEHLSLSG--DSSEELEADHNLSLDKLIK 844 (871)
T ss_pred hhh-ccccccccccchhhhHhhccccchheeeccCccccccccchhhcccchhhccccc--cchhhhhhhhhcchhheee
Confidence 655 655566666677799999999999988 444444677888999999997655555 3456689999999999999
Q ss_pred cccchhhhhhhccCCC
Q 008751 535 DLISEADLLLSKCQSP 550 (555)
Q Consensus 535 ~liseadl~~~~c~~~ 550 (555)
..++. .+.+|.+.
T Consensus 845 ~~~~~---t~~k~~~~ 857 (871)
T KOG1968|consen 845 VELTT---TKRKALNH 857 (871)
T ss_pred ecccc---cccccccc
Confidence 98888 56665543
No 2
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.88 E-value=1.6e-22 Score=223.58 Aligned_cols=144 Identities=22% Similarity=0.217 Sum_probs=123.7
Q ss_pred chhHHHhhCCCceEEEeCCCcccc--------cccccccCC--CCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-----
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN--------SHGVMGKSD--NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK----- 72 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r--------n~~v~gsl~--~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek----- 72 (555)
..+.||++.||.|+|+||||+|+- +...+.+.. ..++.|+|+||+||- +++++.+|..+++.
T Consensus 342 LAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---~~~~Vdvilslv~a~~k~~ 418 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---PRAAVDVILSLVKATNKQA 418 (877)
T ss_pred HHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC---cHHHHHHHHHHHHhhcchh
Confidence 467999999999999999999952 122222322 258899999999998 48999999999982
Q ss_pred ------------------cCCcEEEEecCCC-CCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008751 73 ------------------AKGPVILTSNSNN-ITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIE 132 (555)
Q Consensus 73 ------------------SKrPIILtCND~n-~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~ 132 (555)
..|||||||||.+ +.|.+++. +..|.|.+|+...+..||+.||.+||+.++...|.+|++
T Consensus 419 ~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~e 498 (877)
T KOG1969|consen 419 TGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCE 498 (877)
T ss_pred hcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHH
Confidence 2489999999996 66777776 689999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHhhcCCC
Q 008751 133 SCRADIRKTIMHLQFWCQNKGY 154 (555)
Q Consensus 133 ~S~GDIRqaLN~LQf~s~s~~~ 154 (555)
.+++|||.|||.|||.+....-
T Consensus 499 l~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 499 LTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HhcchHHHHHHHHHHHHHhccc
Confidence 9999999999999999887654
No 3
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.82 E-value=7.2e-20 Score=185.80 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=147.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEK 119 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEg 119 (555)
..|+++|.|+|.++.+ .++||++.|++ +.|++||+||+.+++++++++ |+-||...|+.++|...|..||++||
T Consensus 127 ~fKvvvi~ead~LT~d---AQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 127 PFKVVVINEADELTRD---AQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred ceEEEEEechHhhhHH---HHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 5789999999999986 56788888887 578999999999999999997 79999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCCcccccccccCCCCCCcccccccCCCccCCCCCchhHHHHHHHHH
Q 008751 120 VELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGKDKKLQKLYVPELFDPDAGHHMLPKKIPWGFPSQLSELVVKEIM 199 (555)
Q Consensus 120 l~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~~~~~~k~~~k~~~~~pFD~i~g~~l~p~i~p~~~P~~L~el~l~Ei~ 199 (555)
+.++.+.+.+|++.++||+|+||.+|+..+..+. ||.. -....|.-+||.+.+|++
T Consensus 204 l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~--------------~~~a----------~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 204 LQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE--------------PFTA----------NSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc--------------cccc----------cCCCCCCccHHHHHHHHH
Confidence 9999999999999999999999999999887632 3331 013357789999999999
Q ss_pred hhhhhhhcccchhhccccCCCCCCCCCCcCCCCCCcchHHHHH
Q 008751 200 KSLSLMEENSTLRELSEGEGHDEMPSNQDMHNNPADSVEAKKE 242 (555)
Q Consensus 200 ~si~~~ee~~~~le~~e~l~~~~~~n~l~~~~~~~d~~~~~k~ 242 (555)
..|...|.+.+++++++. +|+|++||+|+..|-+..-
T Consensus 260 ~~i~~eQs~~~L~~vR~~------LYeLL~~CIPP~~Ilk~Ll 296 (351)
T KOG2035|consen 260 RVILKEQSPAKLLEVRGR------LYELLSHCIPPNTILKELL 296 (351)
T ss_pred HHHHhccCHHHHHHHHHH------HHHHHhccCChHHHHHHHH
Confidence 999999999999999987 8999999999999955543
No 4
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.78 E-value=1.2e-19 Score=180.92 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=115.3
Q ss_pred CCceEEEeCCCccc----ccc-----cccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCC
Q 008751 17 DDEVVEVIHIPDDE----NSH-----GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNN 85 (555)
Q Consensus 17 Gy~VIELNASDdR~----rn~-----~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n 85 (555)
.-.|+|+||||+|+ |+. ..+..+..+++|+||+||+|.|+++ .+.||++.|+- ..++|+|+||..+
T Consensus 78 ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g---AQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 78 KEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG---AQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred hhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH---HHHHHHHHHHHHcccchhhhhhcchh
Confidence 34699999999885 221 1223445568999999999999874 67888888885 4568999999999
Q ss_pred CCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCC
Q 008751 86 ITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYG 155 (555)
Q Consensus 86 ~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~~~~ 155 (555)
+++.++.+ |..+||.+.+..++..||..|++.|++.++++.|++|+..++||+||+||+||.-..+.+.-
T Consensus 155 KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~V 225 (333)
T KOG0991|consen 155 KIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLV 225 (333)
T ss_pred hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcccccc
Confidence 87776666 78999999999999999999999999999999999999999999999999999988777653
No 5
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.77 E-value=8.2e-19 Score=179.92 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=111.8
Q ss_pred CceEEEeCCCccccc--------cc-ccccC------CCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-c-CCcEEEE
Q 008751 18 DEVVEVIHIPDDENS--------HG-VMGKS------DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-A-KGPVILT 80 (555)
Q Consensus 18 y~VIELNASDdR~rn--------~~-v~gsl------~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-S-KrPIILt 80 (555)
..|+|+||||+|+++ .. ..... .-..+|+|||||+|.|+.+ .|+||++.|++ + +..||||
T Consensus 89 ~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd---aq~aLrr~mE~~s~~trFiLI 165 (346)
T KOG0989|consen 89 CRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD---AQAALRRTMEDFSRTTRFILI 165 (346)
T ss_pred cchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHH---HHHHHHHHHhccccceEEEEE
Confidence 469999999988652 00 00000 1124699999999999875 79999999998 3 3589999
Q ss_pred ecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC
Q 008751 81 SNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGY 154 (555)
Q Consensus 81 CND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~~~ 154 (555)
||+.+..+.++.+ |.+++|++.....+..+|+.||.+||+.+++++++.|+..++||+|+|+++||-.+..+..
T Consensus 166 cnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~ 240 (346)
T KOG0989|consen 166 CNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKR 240 (346)
T ss_pred cCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcc
Confidence 9999987666666 6899999999999999999999999999999999999999999999999999998885443
No 6
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=6.1e-18 Score=182.39 Aligned_cols=146 Identities=26% Similarity=0.321 Sum_probs=123.9
Q ss_pred chhHHHhhCCCceEEEeCCCcccc--------cccccccCCCCCCcEEEEeCCCCCCc-ccHHHHHHHHHHHHHcCCcEE
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN--------SHGVMGKSDNHVKPLILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVI 78 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r--------n~~v~gsl~~~kkkLILiDEVD~Lf~-eDrGf~sAL~~liekSKrPII 78 (555)
...++|+++|++++|+||||.|.. ......++++.+++||||||||.|+. .|+|++.+|.++++.+++|||
T Consensus 55 la~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iI 134 (482)
T PRK04195 55 LAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPII 134 (482)
T ss_pred HHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEE
Confidence 346899999999999999997642 11222334434678999999999987 588999999999999999999
Q ss_pred EEecCCCCCCc-Cccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC
Q 008751 79 LTSNSNNITLP-DSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 79 LtCND~n~~L~-~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~~ 153 (555)
||||+.....+ .+++ |..|+|.+|+..++..+|+.||.+||+.+++++++.|++.++||+|++||.||+++.+.+
T Consensus 135 li~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~ 211 (482)
T PRK04195 135 LTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYG 211 (482)
T ss_pred EeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC
Confidence 99999875444 3454 689999999999999999999999999999999999999999999999999999775543
No 7
>PRK04132 replication factor C small subunit; Provisional
Probab=99.75 E-value=7.9e-18 Score=192.10 Aligned_cols=140 Identities=15% Similarity=0.154 Sum_probs=119.3
Q ss_pred hHHHhhC-----CCceEEEeCCCcccc--------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cC
Q 008751 10 CEAAQHA-----DDEVVEVIHIPDDEN--------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AK 74 (555)
Q Consensus 10 ~~iAkel-----Gy~VIELNASDdR~r--------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SK 74 (555)
.++|+++ +++++|+||||.|+. .......+.+.++++|||||||.|+.+ .+.||.++|+. .+
T Consensus 584 ~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~---AQnALLk~lEep~~~ 660 (846)
T PRK04132 584 LALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---AQQALRRTMEMFSSN 660 (846)
T ss_pred HHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHH---HHHHHHHHhhCCCCC
Confidence 4678887 678999999997642 111122233335799999999999864 68999999996 68
Q ss_pred CcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 75 GPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 75 rPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
++|||+||+.++.++++++ |..++|++|+..++..+|..||.+||+.++++.+..|+..++||+|+|||.||.++...
T Consensus 661 ~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~ 739 (846)
T PRK04132 661 VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD 739 (846)
T ss_pred eEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 8999999999988888887 79999999999999999999999999999999999999999999999999999988654
No 8
>PLN03025 replication factor C subunit; Provisional
Probab=99.67 E-value=4.1e-16 Score=159.49 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=112.2
Q ss_pred hHHHhhC-----CCceEEEeCCCccccc-------c-cccc-cCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--c
Q 008751 10 CEAAQHA-----DDEVVEVIHIPDDENS-------H-GVMG-KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--A 73 (555)
Q Consensus 10 ~~iAkel-----Gy~VIELNASDdR~rn-------~-~v~g-sl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--S 73 (555)
.++|+++ ...++|+||||.++.. . .... .+...+.++|||||||.|+.+ .+.+|.++++. .
T Consensus 52 ~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~---aq~aL~~~lE~~~~ 128 (319)
T PLN03025 52 LALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG---AQQALRRTMEIYSN 128 (319)
T ss_pred HHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH---HHHHHHHHHhcccC
Confidence 3556664 3469999999976431 0 0011 112246789999999999875 46788888886 3
Q ss_pred CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 74 KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 74 KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
+++|||+||..++.++++++ |..++|++|+..++..+|..||.+||+.++++.++.|+..++||+|+++|.||.++.+
T Consensus 129 ~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~ 207 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSG 207 (319)
T ss_pred CceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 46799999998877777776 6889999999999999999999999999999999999999999999999999987754
No 9
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=8.3e-14 Score=157.31 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=109.3
Q ss_pred CceEEEeCCCcccc------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCCCc
Q 008751 18 DEVVEVIHIPDDEN------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLP 89 (555)
Q Consensus 18 y~VIELNASDdR~r------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~L~ 89 (555)
.+++|+|+++.++. ...........++|||||||||.|+.+ .+++|.++++.. ++.|||+||+.+++++
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~---A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH---AFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH---HHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 47999999886532 111111122347899999999999763 578999999883 6789999999998877
Q ss_pred Cccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH-HHHhhcCC
Q 008751 90 DSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL-QFWCQNKG 153 (555)
Q Consensus 90 ~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L-Qf~s~s~~ 153 (555)
.+++ |..|+|++++..+|..+|+.||.+||+.++++.+..|+..++||+|++|+.| |.+..+++
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~ 230 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSAN 230 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 7887 7999999999999999999999999999999999999999999999999995 66655443
No 10
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=5.2e-13 Score=145.09 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=104.4
Q ss_pred CCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCC
Q 008751 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (555)
Q Consensus 17 Gy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~ 87 (555)
..+++|+||++.++. ....... ..++++++||||||.|+.+ .+.||.++++. .++-|||+||+..+.
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p-~~g~~KV~IIDEah~Ls~~---A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAP-MGGKYKVYIIDEVHMLTDQ---SFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhh-hcCCCEEEEEechhhcCHH---HHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 347999999764421 0111111 2347899999999999764 68899999987 556688999998877
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
++.+++ |..++|++++..++..+|..||.+||+.++++.+..|++.++||+|++|+.|+.
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq 225 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQ 225 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHH
Confidence 777777 688999999999999999999999999999999999999999999999999954
No 11
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.43 E-value=1.7e-13 Score=141.85 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=119.3
Q ss_pred CceEEEeCCCcccc--------cccccc--cCCCC--CCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecC
Q 008751 18 DEVVEVIHIPDDEN--------SHGVMG--KSDNH--VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNS 83 (555)
Q Consensus 18 y~VIELNASDdR~r--------n~~v~g--sl~~~--kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND 83 (555)
+.++|+||||+|+. ...... ..++. ..|+||+||+|.|+.+ .+.||++.+++ .+..|+++||.
T Consensus 94 ~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~---AQnALRRviek~t~n~rF~ii~n~ 170 (360)
T KOG0990|consen 94 SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD---AQNALRRVIEKYTANTRFATISNP 170 (360)
T ss_pred hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH---HHHHHHHHHHHhccceEEEEeccC
Confidence 44999999998864 111111 22333 5799999999999875 57888888886 34689999999
Q ss_pred CCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCCccc----
Q 008751 84 NNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGKDK---- 158 (555)
Q Consensus 84 ~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~~~~~~k---- 158 (555)
+++..|.+.+ |..++|.+.+..++..++..||..|.++++++...+++..+.||+|+++|.||......+..+..
T Consensus 171 ~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~ 250 (360)
T KOG0990|consen 171 PQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPN 250 (360)
T ss_pred hhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCch
Confidence 9988887776 68999999999999999999999999999999999999999999999999999877655432221
Q ss_pred --ccccccCCCCCC
Q 008751 159 --KLQKLYVPELFD 170 (555)
Q Consensus 159 --~~~k~~~~~pFD 170 (555)
..++...+.|+|
T Consensus 251 ~~vy~c~g~p~~~d 264 (360)
T KOG0990|consen 251 DLVYQCKGAPQPSD 264 (360)
T ss_pred hhHHHhcCCCChhH
Confidence 245666666666
No 12
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6.1e-13 Score=148.83 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=106.2
Q ss_pred CCceEEEeCCCcccc---cc---cccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 17 DDEVVEVIHIPDDEN---SH---GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 17 Gy~VIELNASDdR~r---n~---~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
..+++|+||++.++. .. .+......++++++||||||.|+.+ ...+|.++++. ..+.|||+|++..+.+
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~---A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH---SFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH---HHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 348999999875421 00 1111112247899999999999764 57889999998 4568999999987765
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH-HHHhhc
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL-QFWCQN 151 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L-Qf~s~s 151 (555)
+.+++ |..++|++++..++..+|..||.+||+.++++.+..|+..++||+|.++|.| |.++.+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg 227 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYG 227 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 66666 6899999999999999999999999999999999999999999999999998 555443
No 13
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.3e-12 Score=142.91 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=106.2
Q ss_pred CceEEEeCCCcccc------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCc
Q 008751 18 DEVVEVIHIPDDEN------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLP 89 (555)
Q Consensus 18 y~VIELNASDdR~r------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~ 89 (555)
-+++|+||++.++. ...+......++++++||||||.|+.+ ...||.++++. .++.|||+|+++.+.++
T Consensus 88 ~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~---a~naLLk~LEepp~~~~fIlattd~~kl~~ 164 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH---SFNALLKTLEEPPSHVKFILATTDHHKLPV 164 (509)
T ss_pred ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH---HHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence 36999999874431 011111122347899999999999874 46789999987 46789999999887666
Q ss_pred Cccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH-HHhhc
Q 008751 90 DSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ-FWCQN 151 (555)
Q Consensus 90 ~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ-f~s~s 151 (555)
.+++ |..++|++++..++..+|..|+.+||+.++++.+..|+..++||+|.++|.|+ .++.+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~ 228 (509)
T PRK14958 165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYG 228 (509)
T ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC
Confidence 7776 68999999999999999999999999999999999999999999999999994 55443
No 14
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.4e-12 Score=145.86 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=108.3
Q ss_pred CceEEEeCCCcccc------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCc
Q 008751 18 DEVVEVIHIPDDEN------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLP 89 (555)
Q Consensus 18 y~VIELNASDdR~r------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~ 89 (555)
.+++|+||++.++- ...+......++++||||||||.|+.. .+.+|.++++. .++.|||+||+.++.++
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~---AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH---AFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH---HHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 57999999875431 111111112347899999999999864 46788888887 56789999999998888
Q ss_pred Cccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH-HHhhcCC
Q 008751 90 DSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ-FWCQNKG 153 (555)
Q Consensus 90 ~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ-f~s~s~~ 153 (555)
.+++ |..++|++++..++..+|..||.+||+.++++.++.|+..++||+|++|+.|+ .+..+++
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~ 235 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAG 235 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 8887 79999999999999999999999999999999999999999999999999985 4554433
No 15
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.36 E-value=5.3e-13 Score=133.39 Aligned_cols=121 Identities=18% Similarity=0.179 Sum_probs=99.0
Q ss_pred CceEEEeCCCccccc---ccc-----cccCCC--CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCC
Q 008751 18 DEVVEVIHIPDDENS---HGV-----MGKSDN--HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNN 85 (555)
Q Consensus 18 y~VIELNASDdR~rn---~~v-----~gsl~~--~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n 85 (555)
.+|+|+||||.+... ..+ ..+..+ ++.++|||||||.|+.+ ..+|+.++++. .++||||+||+++
T Consensus 74 ~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~---A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 74 PDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED---AANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred CceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH---HHHHHHHHhccCCCCeEEEEEcCChh
Confidence 799999999987621 001 111122 46899999999999884 57899998886 6789999999999
Q ss_pred CCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 86 ITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 86 ~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
+.++++++ |..++|++ ..++..||..| ++.+..++..+.||+|+++|.||++....
T Consensus 151 ~il~tI~SRc~~i~f~~------~~~~~~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~~ 207 (325)
T COG0470 151 KILPTIRSRCQRIRFKP------PSRLEAIAWLE-----DQGLEEIAAVAEGDARKAINPLQALAALE 207 (325)
T ss_pred hccchhhhcceeeecCC------chHHHHHHHhh-----ccchhHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 88888887 78999988 66788888888 88899999999999999999999988873
No 16
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=3e-12 Score=139.72 Aligned_cols=139 Identities=13% Similarity=0.164 Sum_probs=111.4
Q ss_pred chh-HHHhhCCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcE
Q 008751 8 SLC-EAAQHADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPV 77 (555)
Q Consensus 8 ~~~-~iAkelGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPI 77 (555)
..| .+++....+|+|+||++.++. .......+ ..+++++||||||.|+.+ ...+|.++++. ...-|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~-~~~~KVvIIDEah~Ls~~---A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPI-SSKFKVYIIDEVHMLSNS---AFNALLKTLEEPAPHVKF 149 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccc-cCCceEEEEeChHhCCHH---HHHHHHHHHhCCCCCeEE
Confidence 344 555667789999999875432 11111222 347899999999999864 56789999986 34569
Q ss_pred EEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 78 ILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 78 ILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
||+|++..+..+.+++ |..+.|++++..++..+|..||.+||+.++++.++.|+..++||+|.+++.|+-.+.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~ 223 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAI 223 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999988775555666 789999999999999999999999999999999999999999999999999976554
No 17
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=5.4e-12 Score=138.90 Aligned_cols=135 Identities=17% Similarity=0.154 Sum_probs=108.3
Q ss_pred HHhhCCCceEEEeCCCcccc----ccc--ccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecC
Q 008751 12 AAQHADDEVVEVIHIPDDEN----SHG--VMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNS 83 (555)
Q Consensus 12 iAkelGy~VIELNASDdR~r----n~~--v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND 83 (555)
+.....++++|+||++.++. ... ........+++++||||||.|+.+ .+.||.++++. ..+.|||+|++
T Consensus 80 ~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~---A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 80 ALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE---AFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred HhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---HHHHHHHHHhhcCCceEEEEEECC
Confidence 34446688999999875532 100 111112246899999999999764 57899999987 45669999999
Q ss_pred CCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 84 NNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 84 ~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
+.+.++.+++ |..++|++++..++..+|..||.+||+.++++.+..|+..++||+|++++.|+-.+
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai 223 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAI 223 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8766666676 68999999999999999999999999999999999999999999999999997533
No 18
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=8e-12 Score=140.14 Aligned_cols=126 Identities=12% Similarity=0.146 Sum_probs=104.5
Q ss_pred CceEEEeCCCccc----c---cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 18 DEVVEVIHIPDDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 18 y~VIELNASDdR~----r---n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
.+++|+||++.++ | ....... ..++++|+||||||.|+.+ .+.+|.++++. ..+.|||+|++..+.+
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p-~~g~~KV~IIDEah~Ls~~---a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAP-ARGRFKVYLIDEVHMLSRH---SFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEechHhCCHH---HHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 4789999986332 1 1111111 2347899999999999864 57899999998 5677999999988766
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
+.+++ |..++|++++..++..+|..||.+||+.+++..+..|+..++||+|++|+.|+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldq 223 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQ 223 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 67777 799999999999999999999999999999999999999999999999999954
No 19
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=8.6e-12 Score=139.35 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=105.3
Q ss_pred CceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 18 y~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
.+++|+||++.++. ....... ..++++++||||||.|+.+ ...+|.++++. ..+-|||+|+++.+.+
T Consensus 93 ~D~~eldaas~~~Vd~iReli~~~~~~p-~~g~~KV~IIDEvh~Ls~~---a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 93 VDYTELDAASNRGVDEVQQLLEQAVYKP-VQGRFKVFMIDEVHMLTNT---AFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CceeecCcccccCHHHHHHHHHHHHhCc-ccCCceEEEEEChhhCCHH---HHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 47999999875431 1111122 2247899999999999875 46788888886 3456999999988777
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH-HHhhc
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ-FWCQN 151 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ-f~s~s 151 (555)
+.+++ |..++|++++..++..+|+.|+.+||+.++++.+..|+..++||+|.+++.|. .++.+
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~ 233 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFG 233 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 77776 79999999999999999999999999999999999999999999999999984 44443
No 20
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.4e-11 Score=136.90 Aligned_cols=130 Identities=14% Similarity=0.200 Sum_probs=107.2
Q ss_pred CceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 18 y~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
.+|+|+||++.++- ......... .+++++||||||.|+.+ .+.+|.++++. ..+-|||+|++.++.+
T Consensus 87 ~dvieidaas~~gvd~iRel~~~~~~~P~~-~~~KVvIIDEah~Lt~~---A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 87 IDVVELDAASHGGVDDTRELRDRAFYAPAQ-SRYRIFIVDEAHMVTTA---GFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhc-CCceEEEEECCCcCCHH---HHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 68999999764321 111111222 47899999999999864 67899999998 4566899999887766
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
+.+++ |..++|++++..++..+|..||.+||+.++++.+..|+..++||+|.++|.|+.....
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAG 226 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 66776 6899999999999999999999999999999999999999999999999999986654
No 21
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=1.2e-11 Score=139.33 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=103.8
Q ss_pred CceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 18 y~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
.+++|+|+++.++. ......... .+++||||||||.|.. +...+|.++++. ..+.|||+||+..+.+
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~-gk~KVIIIDEad~Ls~---~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTA-GKYKVYIIDEVHMLSK---SAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhh-CCcEEEEEECccccCH---HHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 47899998875432 011111122 3679999999999975 356789999986 4578999999988777
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
+.+++ |..|+|++++..++..+|..|+.+||+.++++.+..|++.++||+|.+++.|+.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDq 223 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQ 223 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777 689999999999999999999999999999999999999999999999999954
No 22
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.29 E-value=4.1e-11 Score=131.64 Aligned_cols=111 Identities=28% Similarity=0.465 Sum_probs=89.8
Q ss_pred CCCcEEEEeCCCCCCccc-HHHHHHHHHHHHHcCC-cEEEEecCC------CC----------CCcC-ccc---eeEEEe
Q 008751 42 HVKPLILIEDVDVFFPED-RGFIAGIQQIAEKAKG-PVILTSNSN------NI----------TLPD-SLD---RLEVSF 99 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eD-rGf~sAL~~liekSKr-PIILtCND~------n~----------~L~~-l~~---~l~I~F 99 (555)
.+++|||+||...++..+ ..|..+|.+++..+++ |+|+|.++. +. .+++ ++. ...|.|
T Consensus 131 ~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F 210 (519)
T PF03215_consen 131 SNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF 210 (519)
T ss_pred CCceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence 367899999999988754 4788899999999998 999999842 10 2222 222 368999
Q ss_pred cCCCHHHHHHHHHHHHHHc-----CC-CCC--HHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 100 TMPMPKDLLSHLQMICAAE-----KV-ELQ--QHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 100 krPs~~eI~srL~~Ic~kE-----gl-~Id--~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
++.++.-|.+.|..||.+| |. ..+ ..+|+.|++.++||||.|||.|||||..+
T Consensus 211 NpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~g 271 (519)
T PF03215_consen 211 NPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCLKG 271 (519)
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Confidence 9999999999999999999 33 444 34699999999999999999999999843
No 23
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.2e-11 Score=142.19 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=103.7
Q ss_pred CCceEEEeCCCccc----c--cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 17 DDEVVEVIHIPDDE----N--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 17 Gy~VIELNASDdR~----r--n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
..+++|+||++.++ | ...+......++++||||||||.|+. +.+.+|.++++. .++.|||+||+..+.+
T Consensus 87 ~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 87 FVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---SSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---HHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 34689999986332 1 11111111224789999999999975 467899999997 4577999999988776
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
+.+++ |..++|++++..++..+|..|+..||+.++++.+..|+..++||+|++++.|+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLd 222 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTD 222 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 66776 78999999999999999999999999999999999999999999999999995
No 24
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.6e-11 Score=133.94 Aligned_cols=129 Identities=12% Similarity=0.134 Sum_probs=106.0
Q ss_pred CceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 18 y~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
.+++|+||+..++. ....... +.++++++||||||.|+.+ .+.+|.++++. ..+.|||+|++..+.+
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p-~~g~~kViIIDEa~~ls~~---a~naLLK~LEepp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMP-SQGRYKVYLIDEVHMLSKQ---SFNALLKTLEEPPEYVKFILATTDYHKIP 163 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhh-hcCCcEEEEEechhhccHH---HHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence 58999998653321 1111112 2346789999999999763 67899999997 3567999999988777
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
+.+++ |..++|++++..++..+|..|+.+||+.+++..++.|+..++||+|+++|.|+.++.
T Consensus 164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~ 226 (546)
T PRK14957 164 VTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAIS 226 (546)
T ss_pred hhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 67676 799999999999999999999999999999999999999999999999999987654
No 25
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=4.7e-11 Score=130.79 Aligned_cols=132 Identities=12% Similarity=0.147 Sum_probs=104.5
Q ss_pred CCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCC
Q 008751 16 ADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNI 86 (555)
Q Consensus 16 lGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~ 86 (555)
...+|+|+|+++.+.. .......+. .++++|||||+|.++. ..+.+|.++++.. ..-+|++||....
T Consensus 83 ~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~-~~~kVVIIDEad~ls~---~a~naLLk~LEep~~~t~~Il~t~~~~k 158 (504)
T PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLR-GGRKVYILDEAHMMSK---SAFNALLKTLEEPPEHVIFILATTEPEK 158 (504)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhcccc-CCCeEEEEECccccCH---HHHHHHHHHHHhCCCCEEEEEEcCChhh
Confidence 3457999999875431 111111223 3678999999999865 3577888888873 3457888888765
Q ss_pred CCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 87 TLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 87 ~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
..+.+.+ |..++|++|+..++..+|..||.+||+.++++.++.|+..++||+|+++|.||.++..
T Consensus 159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~ 224 (504)
T PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL 224 (504)
T ss_pred CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 5455555 6899999999999999999999999999999999999999999999999999987664
No 26
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=2e-11 Score=134.24 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=104.2
Q ss_pred CceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 18 y~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
.+++|++|+..+.. ....... ..++++++||||||.|+.+ ...+|.++++. ..+.|||+|+++.+.+
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p-~~~~~kVvIIDEad~ls~~---a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAP-TRGRFKVYIIDEVHMLSKS---AFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCc-ccCCceEEEEcCcccCCHH---HHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 47999998764321 1111122 2347899999999999864 56789899887 4567999999988766
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
+.+++ |..++|++++..++..+|..|+.+||+.+++..+..|+..++||+|++++.|+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66666 78999999999999999999999999999999999999999999999999996433
No 27
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=3.5e-11 Score=138.28 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=107.1
Q ss_pred CCceEEEeCCCccc----cc---ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCC
Q 008751 17 DDEVVEVIHIPDDE----NS---HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (555)
Q Consensus 17 Gy~VIELNASDdR~----rn---~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~ 87 (555)
.++|+|+|+++.++ |. ...... ...++|||||||+|.|+.+ .+.+|.++++. ..+-|||+|++..+.
T Consensus 88 ~~dv~eidaas~~~Vd~iR~l~~~~~~~p-~~~~~KV~IIDEad~lt~~---a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARELRERAFFAP-AESRYKIFIIDEAHMVTPQ---GFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCcEEEecccccCCHHHHHHHHHHHHhch-hcCCceEEEEechhhcCHH---HHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 37799999976432 10 111111 2347899999999999874 67899999997 456689999888776
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
++.+++ |..++|++++..+|..+|..||.+||+.+++..+..|+..++||+|.+++.|+-.+..
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~ 228 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAG 228 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 666776 7899999999999999999999999999999999999999999999999999876643
No 28
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=3.3e-11 Score=133.69 Aligned_cols=129 Identities=11% Similarity=0.132 Sum_probs=105.4
Q ss_pred CCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCC
Q 008751 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (555)
Q Consensus 17 Gy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~ 87 (555)
..+++|+++.+.++- ....... +..+++++||||||.|+.+ ...+|.++++. .++.|||+||+..+.
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p-~~~~~KVvIIdev~~Lt~~---a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLP-SRSRYKIFIIDEVHMLSTN---AFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhcc-ccCCceEEEEEChhhCCHH---HHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 467999998764321 1111112 2347899999999999864 57899999997 467899999998876
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
++.+++ |..|.|++++..++..+|..|+.+||+.++++.+..|+..++||+|.+++.|+-..
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 666776 68999999999999999999999999999999999999999999999999996543
No 29
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.21 E-value=1.7e-10 Score=115.63 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=104.6
Q ss_pred CCceEEEeCCCccccc--------ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCC
Q 008751 17 DDEVVEVIHIPDDENS--------HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI 86 (555)
Q Consensus 17 Gy~VIELNASDdR~rn--------~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~ 86 (555)
...++|+|+++.+... ......+.+..+++|++||+|.+..+ .+.+|.++++. .++++|++||...+
T Consensus 68 ~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---~~~~L~~~le~~~~~~~lIl~~~~~~~ 144 (319)
T PRK00440 68 RENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---AQQALRRTMEMYSQNTRFILSCNYSSK 144 (319)
T ss_pred ccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---HHHHHHHHHhcCCCCCeEEEEeCCccc
Confidence 4578999998855320 01111223245789999999999764 35677777774 45689999998766
Q ss_pred CCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 87 TLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 87 ~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
.++.+.+ +..+.|.+++..++..+|+.++.++|+.++++.++.|+..++||+|++++.||.++..+
T Consensus 145 l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~ 211 (319)
T PRK00440 145 IIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATG 211 (319)
T ss_pred cchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 5555555 57899999999999999999999999999999999999999999999999999877653
No 30
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=7.2e-11 Score=128.39 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=101.8
Q ss_pred ceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCc
Q 008751 19 EVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLP 89 (555)
Q Consensus 19 ~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~ 89 (555)
+++|+||++.++. .......++ .++++||+||+|.|+.+ .+.+|.++++. .++-+|++|+++....+
T Consensus 87 dv~el~aa~~~gid~iR~i~~~~~~~p~~-~~~kVvIIDE~h~Lt~~---a~~~LLk~LE~p~~~vv~Ilattn~~kl~~ 162 (472)
T PRK14962 87 DVIELDAASNRGIDEIRKIRDAVGYRPME-GKYKVYIIDEVHMLTKE---AFNALLKTLEEPPSHVVFVLATTNLEKVPP 162 (472)
T ss_pred ccEEEeCcccCCHHHHHHHHHHHhhChhc-CCeEEEEEEChHHhHHH---HHHHHHHHHHhCCCcEEEEEEeCChHhhhH
Confidence 7999999865431 111112222 36789999999999753 46788888887 45557788887665545
Q ss_pred Cccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 90 DSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 90 ~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
.+++ |..+.|.+++..++..+|+.+|.+||+.+++++++.|+..++||+|+++|.|+..+.
T Consensus 163 ~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 163 TIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred HHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5665 588999999999999999999999999999999999999999999999999998654
No 31
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.21 E-value=1.3e-10 Score=117.60 Aligned_cols=140 Identities=19% Similarity=0.182 Sum_probs=107.8
Q ss_pred hhHHHhhCCCceEEEeCCCcccc---c----ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEE
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN---S----HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVIL 79 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r---n----~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIIL 79 (555)
..++|+++|.+++++|+++.+.. . ......+. ..+++|||||||.+... ..+.+|..+++. .+++||+
T Consensus 60 a~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~-~~~~vliiDe~d~l~~~--~~~~~L~~~le~~~~~~~~Il 136 (316)
T PHA02544 60 AKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLT-GGGKVIIIDEFDRLGLA--DAQRHLRSFMEAYSKNCSFII 136 (316)
T ss_pred HHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhccc-CCCeEEEEECcccccCH--HHHHHHHHHHHhcCCCceEEE
Confidence 45678899999999999983310 0 00011112 35789999999999332 256788888886 5679999
Q ss_pred EecCCCCCCcCccc-eeEEEecCCCHHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 80 TSNSNNITLPDSLD-RLEVSFTMPMPKDLL-------SHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 80 tCND~n~~L~~l~~-~l~I~FkrPs~~eI~-------srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
+||...+.++.+++ |..+.|..|+..+.. .++..+|.+||+.++++++..|+..+.||+|++++.||.++..
T Consensus 137 t~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~~ 216 (316)
T PHA02544 137 TANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAST 216 (316)
T ss_pred EcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence 99998766666776 578999999987654 5567788999999999999999999999999999999988753
No 32
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.2e-10 Score=121.89 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=102.0
Q ss_pred CceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 18 y~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
.+++|+++++.... ....... ..++++++||||+|.|..+ .+.+|.++++. ..+.|||+|++....+
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p-~~~~~kviIIDEa~~l~~~---a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSP-SKSRFKVYLIDEVHMLSRH---SFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCc-ccCCceEEEEEChhhcCHH---HHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 57999998752211 1111111 2246789999999999753 56788888886 3456999999887655
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
+.+++ |..++|.+++..++..+|..++.+||+.++++.++.|+..++||+|++++.|+..+.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~ 226 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAIN 226 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55666 689999999999999999999999999999999999999999999999999986544
No 33
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=1.2e-10 Score=128.95 Aligned_cols=135 Identities=14% Similarity=0.159 Sum_probs=105.2
Q ss_pred HHhhCCCceEEEeCCCcccc------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecC
Q 008751 12 AAQHADDEVVEVIHIPDDEN------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNS 83 (555)
Q Consensus 12 iAkelGy~VIELNASDdR~r------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND 83 (555)
+......+|+|++|++.++- ...+.......+++++||||||.|+.+ .+.+|.++++. ..+-|||+|+.
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~---a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG---AFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---HHHHHHHHhcCCCCCeEEEEEeCC
Confidence 33344689999999764421 011111122347899999999999864 57788888876 23457888888
Q ss_pred CCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 84 NNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 84 ~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
+.+.++.+++ |..+.|++|+..++..+|+.|+.+||+.++++.+..|+..++||+|.+++.|+...
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~ 225 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAI 225 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7766555666 68899999999999999999999999999999999999999999999999997543
No 34
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.3e-10 Score=130.11 Aligned_cols=129 Identities=13% Similarity=0.182 Sum_probs=105.4
Q ss_pred CCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCC
Q 008751 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (555)
Q Consensus 17 Gy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~ 87 (555)
.++++|+++++.+.. .......+ ..+++++||||+|.|+.+ .+.+|.++++. ...-|||+|+...+.
T Consensus 89 ~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~-~~~~KVvIIdea~~Ls~~---a~naLLK~LEepp~~tifIL~tt~~~kI 164 (614)
T PRK14971 89 SYNIHELDAASNNSVDDIRNLIEQVRIPPQ-IGKYKIYIIDEVHMLSQA---AFNAFLKTLEEPPSYAIFILATTEKHKI 164 (614)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhCcc-cCCcEEEEEECcccCCHH---HHHHHHHHHhCCCCCeEEEEEeCCchhc
Confidence 589999999865431 01112223 347899999999999864 57789999987 234488999888777
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
++.+++ |..++|++++..++..+|..|+.+||+.++++.++.|+..++||+|++++.|+..+
T Consensus 165 l~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~ 227 (614)
T PRK14971 165 LPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVV 227 (614)
T ss_pred hHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777777 68999999999999999999999999999999999999999999999999997643
No 35
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=8e-11 Score=131.58 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=103.0
Q ss_pred CCceEEEeCCCcccc----c--ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 17 DDEVVEVIHIPDDEN----S--HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 17 Gy~VIELNASDdR~r----n--~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
.-+|+|+|+++.+.. . ..+.......+++||||||+|.|..+ .+.+|.++++. .+..|||+||+..+.+
T Consensus 87 hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~---a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE---AFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH---HHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 456999999764421 0 11111112236789999999999754 56888899886 3566999999887655
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
+.+++ |..|+|++++..++..+|..||.+||+.++++.++.|+..++||+|++|+.|+.+.
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55666 68999999999999999999999999999999999999999999999999997543
No 36
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=1.7e-10 Score=126.60 Aligned_cols=130 Identities=9% Similarity=0.114 Sum_probs=103.8
Q ss_pred CCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCC
Q 008751 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (555)
Q Consensus 17 Gy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~ 87 (555)
..+++|+||++.++. .......++ .++++|||||||.|+. +.+.+|.++++. ..+-||++|++..+.
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~-~~~KVvIIDEa~~Ls~---~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQ-GKHKIFIIDEVHMLSK---GAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhcccc-CCcEEEEEEChhhcCH---HHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 468999999764431 111122333 4789999999999975 357889999887 344578888887765
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
.+.+++ |..+.|++++..++..+|..|+.+||+.++++.++.|+..++||+|.+++.|+-.+.
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555665 688999999999999999999999999999999999999999999999999976543
No 37
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=1.8e-10 Score=129.30 Aligned_cols=111 Identities=22% Similarity=0.313 Sum_probs=87.7
Q ss_pred CCCcEEEEeCCCCCCcccHHHHH-HHH-HHHHHcCCcEEEEecCCCC--------CC-------cCccc---eeEEEecC
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIA-GIQ-QIAEKAKGPVILTSNSNNI--------TL-------PDSLD---RLEVSFTM 101 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~s-AL~-~liekSKrPIILtCND~n~--------~L-------~~l~~---~l~I~Fkr 101 (555)
.+++|||+||+|.++..+..++. .|+ .+++.+++|||+|+|+... .+ +.+++ +..|.|++
T Consensus 194 ~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnP 273 (637)
T TIGR00602 194 TDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNP 273 (637)
T ss_pred CceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCC
Confidence 36789999999999875444444 445 4777788999999996311 11 23442 36799999
Q ss_pred CCHHHHHHHHHHHHHHcCCC------C-CHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 102 PMPKDLLSHLQMICAAEKVE------L-QQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 102 Ps~~eI~srL~~Ic~kEgl~------I-d~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
.+..+|.++|..||..|+.. + +++.++.|+..++||||+|||.|||||..+
T Consensus 274 ia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 274 IAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence 99999999999999998653 2 468999999999999999999999999865
No 38
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=2.1e-10 Score=127.99 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=107.5
Q ss_pred HHHhhCCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEe
Q 008751 11 EAAQHADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTS 81 (555)
Q Consensus 11 ~iAkelGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtC 81 (555)
.+......+|+|++|++.++. .......++ .++++|||||||.|+.+ ...+|.++++. ..+-|||+|
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~-a~~KVvIIDEad~Ls~~---a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVS-ARYKVYIIDEVHMLSTA---AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhc-CCcEEEEEEChHhCCHH---HHHHHHHHHHhCCCCeEEEEEe
Confidence 444555678999998764321 111122233 47899999999999864 46788888887 345699999
Q ss_pred cCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 008751 82 NSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148 (555)
Q Consensus 82 ND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~ 148 (555)
++..+.++.+++ |..|.|++++..++..+|..||.+||+.++++.++.|+..++||+|.+++.|+-.
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkl 237 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQA 237 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 988876666676 7899999999999999999999999999999999999999999999999999544
No 39
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=2.1e-10 Score=123.96 Aligned_cols=130 Identities=12% Similarity=0.165 Sum_probs=104.6
Q ss_pred CCceEEEeCCCcccc------c-ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCC
Q 008751 17 DDEVVEVIHIPDDEN------S-HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (555)
Q Consensus 17 Gy~VIELNASDdR~r------n-~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~ 87 (555)
..+++|+++++.++. . ....... ..++++|||||+|.|+.+ .+.+|.++++.. .+.|||+||+..+.
T Consensus 89 ~~d~~~i~g~~~~gid~ir~i~~~l~~~~~-~~~~kvvIIdead~lt~~---~~n~LLk~lEep~~~~~~Il~t~~~~kl 164 (451)
T PRK06305 89 SLDVLEIDGASHRGIEDIRQINETVLFTPS-KSRYKIYIIDEVHMLTKE---AFNSLLKTLEEPPQHVKFFLATTEIHKI 164 (451)
T ss_pred CCceEEeeccccCCHHHHHHHHHHHHhhhh-cCCCEEEEEecHHhhCHH---HHHHHHHHhhcCCCCceEEEEeCChHhc
Confidence 467999998665421 0 1111111 246799999999999864 567899999873 55699999888766
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
++.+++ |..++|++++..++..+|..++.+||+.++++.++.|+..++||+|+++|.|+....
T Consensus 165 ~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 165 PGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVG 228 (451)
T ss_pred chHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666676 689999999999999999999999999999999999999999999999999997553
No 40
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=3.3e-10 Score=126.96 Aligned_cols=136 Identities=13% Similarity=0.175 Sum_probs=107.3
Q ss_pred HHhhCCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEec
Q 008751 12 AAQHADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSN 82 (555)
Q Consensus 12 iAkelGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCN 82 (555)
++.....+++|+++...+.- .......+. .++++|||||+|.|..+ .+.+|.++++. ..+-|||+|+
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~-~~~KViIIDEad~Lt~~---a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQ-ARWKVYVIDECHMLSTA---AFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhc-CCceEEEEECccccCHH---HHHHHHHHHhcCCcCeEEEEEeC
Confidence 33344568999998753321 111112222 36799999999999764 56788888886 2345899999
Q ss_pred CCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 83 SNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 83 D~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
+....++.+++ |..++|++++..++..+|..|+.+||+.++++.+..|++.++||+|++++.|+..+..
T Consensus 160 ~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~ 229 (620)
T PRK14948 160 DPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLL 229 (620)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 98776677776 6899999999999999999999999999999999999999999999999999976553
No 41
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.11 E-value=1.3e-10 Score=127.48 Aligned_cols=134 Identities=14% Similarity=0.181 Sum_probs=110.5
Q ss_pred CceEEEeCCCccc----c--cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCc
Q 008751 18 DEVVEVIHIPDDE----N--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLP 89 (555)
Q Consensus 18 y~VIELNASDdR~----r--n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~ 89 (555)
.+|+|+.|...++ | +..+.-.....++|++|||||+.|+.+ .+.||.+.++. ..+=|||.|+++.++..
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~---afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ---AFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH---HHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 7899999977442 1 122222333458999999999999864 67888888876 45669999999998777
Q ss_pred Cccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH-HHHhhcCCC
Q 008751 90 DSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL-QFWCQNKGY 154 (555)
Q Consensus 90 ~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L-Qf~s~s~~~ 154 (555)
.+++ |..+.|++.+..+|..+|..|+.+||+.++++.|.-|+..++|-+|-++..| |++..+.+.
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~ 231 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGE 231 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCc
Confidence 7887 6899999999999999999999999999999999999999999999999999 565555543
No 42
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.07 E-value=9.6e-10 Score=112.43 Aligned_cols=131 Identities=13% Similarity=0.175 Sum_probs=101.8
Q ss_pred CCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCC
Q 008751 16 ADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI 86 (555)
Q Consensus 16 lGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~ 86 (555)
..++++++|+++.+.. .......++ .++++|||||+|.+..+ .+.+|.++++. ..+-+|++|++..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~-~~~~vviidea~~l~~~---~~~~Ll~~le~~~~~~~lIl~~~~~~~ 159 (355)
T TIGR02397 84 SSLDVIEIDAASNNGVDDIREILDNVKYAPSS-GKYKVYIIDEVHMLSKS---AFNALLKTLEEPPEHVVFILATTEPHK 159 (355)
T ss_pred CCCCEEEeeccccCCHHHHHHHHHHHhcCccc-CCceEEEEeChhhcCHH---HHHHHHHHHhCCccceeEEEEeCCHHH
Confidence 3578999999753321 111122233 36789999999999763 45677777765 34457888888765
Q ss_pred CCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 87 TLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 87 ~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
.++.+++ +..+.|.+|+..++..+|..++.++|+.++++.+..|+..++||+|++++.|+....
T Consensus 160 l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 160 IPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLIS 224 (355)
T ss_pred HHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 4455555 678999999999999999999999999999999999999999999999999986554
No 43
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=5.3e-10 Score=124.70 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=104.4
Q ss_pred CCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCC
Q 008751 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (555)
Q Consensus 17 Gy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~ 87 (555)
..+++|++|++.++- .......+. .+++++||||||.|+.+ .+.+|.++++.. ..-+||+|+.+.+.
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~-~~~KVIIIDEad~Lt~~---A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTT-FKYKVYIIDEAHMLSTS---AWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhh-CCcEEEEEechHhCCHH---HHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 468999999764321 111112222 36789999999999754 578999999863 33478888887766
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
++.+++ |..++|.+++..++..+|..++.+||+.++++.+..|+..++||+|.+++.|+......
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~ 228 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK 228 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence 556666 68999999999999999999999999999999999999999999999999999865543
No 44
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=1e-09 Score=124.44 Aligned_cols=131 Identities=11% Similarity=0.138 Sum_probs=104.0
Q ss_pred hCCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCC
Q 008751 15 HADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNN 85 (555)
Q Consensus 15 elGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n 85 (555)
....+++|++|+..++. .......+ .++++++||||||.|+.+ .+.||.++++.- .+-+||+|+++.
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~-~g~~KV~IIDEa~~LT~~---A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPT-QSKYKIYIIDEVHMLSKS---AFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchh-cCCCEEEEEEChhhCCHH---HHHHHHHHhhcCCCceEEEEEcCChh
Confidence 44578999998553321 11111222 347899999999999864 678899998873 344788888877
Q ss_pred CCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 86 ITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 86 ~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
+.++.+++ |..++|++++..++..+|..++.+||+.++++.+..|+..++||+|.+++.|+-.+
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~ 224 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVS 224 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66556676 68999999999999999999999999999999999999999999999999998654
No 45
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1.5e-09 Score=120.77 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=107.5
Q ss_pred HHHhhCCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEe
Q 008751 11 EAAQHADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTS 81 (555)
Q Consensus 11 ~iAkelGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtC 81 (555)
.++...+.+++|+|+++.+.. .......+. .++++|||||+|.|..+ .+.+|.++++.. ..-|||++
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~-~~~kVvIIDEa~~L~~~---a~naLLk~LEepp~~tv~Il~t 157 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPAL-ARYKVYIIDEVHMLSTA---AFNALLKTLEEPPPHAIFILAT 157 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCccc-CCeEEEEEeChHhCCHH---HHHHHHHHHhcCCCCeEEEEEe
Confidence 444455678999999764421 111122223 36799999999999764 467888888873 45688999
Q ss_pred cCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 82 NSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 82 ND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
++..+.++.+++ |..+.|++++..++..+|..++.++|+.++++.+..|+..++||+|.+++.|+-+..
T Consensus 158 ~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 158 TEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLAT 227 (585)
T ss_pred CChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 887766666666 688999999999999999999999999999999999999999999999999997655
No 46
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1.9e-09 Score=112.14 Aligned_cols=132 Identities=13% Similarity=0.168 Sum_probs=102.4
Q ss_pred CCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCC
Q 008751 16 ADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNI 86 (555)
Q Consensus 16 lGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~ 86 (555)
++++++|+|+.+.+.. .......++ .++++||+||+|.++.. .+.++.++++.. ..-+|++|+...+
T Consensus 75 ~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~-~~~kiviIDE~~~l~~~---~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 75 FSFNIFELDAASNNSVDDIRNLIDQVRIPPQT-GKYKIYIIDEVHMLSSA---AFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred CCcceEEeccccCCCHHHHHHHHHHHhhcccc-CCcEEEEEeChhhcCHH---HHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 4688999998764321 011122223 36789999999999753 466777777652 2347888888766
Q ss_pred CCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 87 TLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 87 ~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
.++.+.+ |..++|++|+..++..+|..++.++|+.++++.++.|+..++||+|++++.|+..+..
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y 216 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTF 216 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 6665665 5789999999999999999999999999999999999999999999999999987653
No 47
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.9e-09 Score=117.80 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=101.1
Q ss_pred CceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCCC
Q 008751 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITL 88 (555)
Q Consensus 18 y~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~L 88 (555)
-+++|++|++.++. .......+. ++++++||||||.|+.+ ...+|.++++.. ..-+|+++++..+.+
T Consensus 88 ~d~~eidaas~~gvd~ir~I~~~~~~~P~~-~~~KVvIIDEad~Lt~~---a~naLLk~LEepp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 88 PDLIEIDAASNRGIDDIRALRDAVSYTPIK-GKYKVYIIDEAHMLTKE---AFNALLKTLEEPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred CcEEEEeCccCCCHHHHHHHHHHHHhCccc-CCeeEEEEEChhhcCHH---HHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence 47999999765431 111112222 46889999999999753 567888888863 345777787766544
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
+.+.+ |..++|++++..++..+|..+|.++|+.++++.++.|+..++||+|.+++.|+..+.
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~ 226 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQAST 226 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44555 688999999999999999999999999999999999999999999999999987654
No 48
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.6e-09 Score=121.38 Aligned_cols=130 Identities=14% Similarity=0.177 Sum_probs=102.3
Q ss_pred CCceEEEeCCCccc----c---cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCC
Q 008751 17 DDEVVEVIHIPDDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (555)
Q Consensus 17 Gy~VIELNASDdR~----r---n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~ 87 (555)
..+++|+++.+.++ + .....+.++ ..+++|||||+|.|+.+ .+.+|.++++.. ..=|||+|++..+.
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~-~~~KVvIIdEad~Lt~~---a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQK-GRYRVYIIDEVHMLSTA---AFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhc-CCCEEEEEeChhhcCHH---HHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 46788998755331 1 112222333 37899999999999864 467899999873 33478888877665
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
++.+++ |..++|++++..++..+|..|+.+||+.++++.++.|+..++||+|.+++.|+-...
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIA 234 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 555665 689999999999999999999999999999999999999999999999999985443
No 49
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.00 E-value=3.2e-09 Score=116.46 Aligned_cols=144 Identities=22% Similarity=0.269 Sum_probs=107.1
Q ss_pred hhHHHhhCCCceEEEeC-CCcccc---------------cc----------c-ccccCCC------CCCcEEEEeCCCCC
Q 008751 9 LCEAAQHADDEVVEVIH-IPDDEN---------------SH----------G-VMGKSDN------HVKPLILIEDVDVF 55 (555)
Q Consensus 9 ~~~iAkelGy~VIELNA-SDdR~r---------------n~----------~-v~gsl~~------~kkkLILiDEVD~L 55 (555)
+..+|+++||.++|.++ .+.+.. ++ . -.|++.. +++++||+||....
T Consensus 127 vkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~ 206 (634)
T KOG1970|consen 127 VKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQ 206 (634)
T ss_pred HHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchh
Confidence 45899999999999985 332211 00 0 0122211 35789999999998
Q ss_pred Ccc-c-HHHHHHHHHHHHHcCCcEEEEecCCCC--------CCcCccc---e-eEEEecCCCHHHHHHHHHHHHHHcCCC
Q 008751 56 FPE-D-RGFIAGIQQIAEKAKGPVILTSNSNNI--------TLPDSLD---R-LEVSFTMPMPKDLLSHLQMICAAEKVE 121 (555)
Q Consensus 56 f~e-D-rGf~sAL~~liekSKrPIILtCND~n~--------~L~~l~~---~-l~I~FkrPs~~eI~srL~~Ic~kEgl~ 121 (555)
|.- | +.|+.-|+.+....++|+|++-+|... ..+.-++ + ..|.|.+....-|+++|.+||..|+.+
T Consensus 207 ~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~ 286 (634)
T KOG1970|consen 207 FYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANK 286 (634)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhccc
Confidence 875 3 346667788888899998887766421 1111111 1 689999999999999999999999988
Q ss_pred CC------HHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 122 LQ------QHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 122 Id------~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
.. ...++.|+.+++||||.|||+||+|+..+
T Consensus 287 ~s~~k~~~~~~v~~i~~~s~GDIRsAInsLQlssskg 323 (634)
T KOG1970|consen 287 KSGIKVPDTAEVELICQGSGGDIRSAINSLQLSSSKG 323 (634)
T ss_pred ccCCcCchhHHHHHHHHhcCccHHHHHhHhhhhcccC
Confidence 87 78899999999999999999999997444
No 50
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.00 E-value=4.4e-09 Score=106.46 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=91.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEK 119 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEg 119 (555)
..++||+||+|.+..+ .+.+|.++++. ..+.||++|+.....++.+.+ +..+.|.+|+..++..+|..+|.++|
T Consensus 125 ~~~vlilDe~~~l~~~---~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~ 201 (337)
T PRK12402 125 DYKTILLDNAEALRED---AQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG 201 (337)
T ss_pred CCcEEEEeCcccCCHH---HHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4679999999999753 45678888775 335699999876655555665 58899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC
Q 008751 120 VELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 120 l~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~~ 153 (555)
+.++++.++.|+..+.||+|++++.||.++...+
T Consensus 202 ~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~ 235 (337)
T PRK12402 202 VDYDDDGLELIAYYAGGDLRKAILTLQTAALAAG 235 (337)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998874433
No 51
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=1.6e-09 Score=120.27 Aligned_cols=128 Identities=9% Similarity=0.142 Sum_probs=100.4
Q ss_pred CCCceEEEeCCCccc----cc---ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCC
Q 008751 16 ADDEVVEVIHIPDDE----NS---HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI 86 (555)
Q Consensus 16 lGy~VIELNASDdR~----rn---~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~ 86 (555)
-.++++|+++...+. |. ...... ...+++++||||+|.|+.+ .+.+|.++++. ..+=+||+|++..+
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~~---a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSNS---AFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCHH---HHHHHHHhhccCCCCEEEEEecCChHH
Confidence 357899999764221 10 111122 2347899999999999764 57788888886 33447888888765
Q ss_pred CCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 87 TLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 87 ~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
.++.+++ |..++|++++..++..+|..+|.++|+.++++.+..|+..++||+|.+++.|+-
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdk 223 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQ 223 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5455666 678999999999999999999999999999999999999999999999999964
No 52
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.9e-09 Score=114.42 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=102.6
Q ss_pred CCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCC
Q 008751 16 ADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNI 86 (555)
Q Consensus 16 lGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~ 86 (555)
...+++|+++++.++. .......++ ..+++|||||+|.|+.+ .+.+|.++++.. ..-||+++++..+
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~-~~~kvvIIdea~~l~~~---~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQK-GRYRVYIIDEVHMLSIA---AFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhc-CCeEEEEEeChhhCCHH---HHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 3567899998664421 122222333 36789999999999864 467888888863 3458888887765
Q ss_pred CCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 87 TLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 87 ~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
.++.+.+ |..++|.+++..++..+|..++.++|+.++++.++.|+..++||+|.+++.|+...
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVI 233 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555555 58899999999999999999999999999999999999999999999999999643
No 53
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.64 E-value=2.2e-07 Score=99.11 Aligned_cols=140 Identities=13% Similarity=0.113 Sum_probs=101.7
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-----cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecC
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND 83 (555)
...+|+..+..++++||++.-.. ..........+++++|+|||||.+... .+.+|..+++...+-+|.+++.
T Consensus 53 A~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~---~q~~LL~~le~~~iilI~att~ 129 (413)
T PRK13342 53 ARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA---QQDALLPHVEDGTITLIGATTE 129 (413)
T ss_pred HHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH---HHHHHHHHhhcCcEEEEEeCCC
Confidence 45788999999999999874211 000011112236789999999999764 3567888887655434433332
Q ss_pred C--CCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 84 N--NITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE--KV-ELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 84 ~--n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE--gl-~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
. ....+.+++ |..+.|.+++.+++..+|..++..+ |+ .++++.++.|+..++||+|+++|.|+.....
T Consensus 130 n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~ 203 (413)
T PRK13342 130 NPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG 203 (413)
T ss_pred ChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 2 123344555 5789999999999999999998763 55 8999999999999999999999999987655
No 54
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=3.4e-07 Score=96.50 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=87.2
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++.++|||||+|.|..+ ...+|.++++. .++.|||+|+.+...++.+++ |..++|.+|+..++..+|..++..+
T Consensus 140 g~~rVviIDeAd~l~~~---aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~ 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN---AANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ 216 (351)
T ss_pred CCceEEEEEchhhcCHH---HHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc
Confidence 46789999999999654 57789998886 456799999998877777777 6899999999999999999977665
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
+ ++++.+..++..++|+.|++++.|+.
T Consensus 217 ~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 217 G--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 5 78999999999999999999999864
No 55
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=4.8e-07 Score=89.54 Aligned_cols=134 Identities=9% Similarity=0.062 Sum_probs=93.6
Q ss_pred HhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCCCC---
Q 008751 13 AQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNI--- 86 (555)
Q Consensus 13 AkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~n~--- 86 (555)
+...|+.++-+++.+-..+-......+ .+..+++|||+|.+.... ....++-.++.. .+.++|+|+|..-.
T Consensus 65 ~~~~~~~~~y~~~~~~~~~~~~~~~~l--~~~dlLiIDDi~~l~~~~-~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 65 AEQAGRSSAYLPLQAAAGRLRDALEAL--EGRSLVALDGLESIAGQR-EDEVALFDFHNRARAAGITLLYTARQMPDGLA 141 (233)
T ss_pred HHHcCCcEEEEeHHHhhhhHHHHHHHH--hcCCEEEEeCcccccCCh-HHHHHHHHHHHHHHHcCCeEEEECCCChhhhh
Confidence 444566666666543111100000111 234699999999887532 223344444432 35689999998532
Q ss_pred -CCcCccc----eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 87 -TLPDSLD----RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 87 -~L~~l~~----~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
.++++++ +..+.|.+|+.+++...|+..|..+|+.+++++++.|+..+.||+|.+++.|+..-
T Consensus 142 ~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 142 LVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred hhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2355554 36899999999999999999999999999999999999999999999999998654
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.53 E-value=2.6e-07 Score=105.61 Aligned_cols=137 Identities=13% Similarity=0.146 Sum_probs=101.0
Q ss_pred hhHHHhhCCCceEEEeCCCcccc---c--ccccccC-CCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEec
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN---S--HGVMGKS-DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSN 82 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r---n--~~v~gsl-~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCN 82 (555)
...+|+..+..++++||+....+ . ......+ ...++++++|||||.+... .+.+|..+++... ||+|+.
T Consensus 69 A~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~---qQdaLL~~lE~g~--IiLI~a 143 (725)
T PRK13341 69 ARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA---QQDALLPWVENGT--ITLIGA 143 (725)
T ss_pred HHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH---HHHHHHHHhcCce--EEEEEe
Confidence 45788899999999999863211 0 0000001 1125679999999999764 3568888887644 566543
Q ss_pred CC-C---CCCcCccc-eeEEEecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 83 SN-N---ITLPDSLD-RLEVSFTMPMPKDLLSHLQMICA-------AEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 83 D~-n---~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~-------kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
.. + ...+.+++ |..++|.+++.+++...|+.++. .+++.++++.++.|+..+.||+|+++|.|+....
T Consensus 144 TTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 144 TTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVE 223 (725)
T ss_pred cCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 22 2 22344555 57899999999999999999998 6789999999999999999999999999998664
No 57
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.47 E-value=6e-07 Score=88.92 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=86.0
Q ss_pred CcEEEEeCCCCCCcc---cHHHHHHHHHHHHHcCCcEEEEecCCCC----CCcCccce----eEEEecCCCHHHHHHHHH
Q 008751 44 KPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQ 112 (555)
Q Consensus 44 kkLILiDEVD~Lf~e---DrGf~sAL~~liekSKrPIILtCND~n~----~L~~l~~~----l~I~FkrPs~~eI~srL~ 112 (555)
..+++|||+|.+... +..+...+....+..++.||++++.+.. .+++++++ ..+.+.+|+.++....|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 469999999988653 2334555666666556679999986532 34666664 689999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 113 MICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 113 ~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
..+...|+.+++++++.|+..+.||+|+.++.|+..-
T Consensus 178 ~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 178 LRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999753
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.1e-06 Score=94.14 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=103.0
Q ss_pred hhHHHhhCCCceEEEeCCCcccc------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEec
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSN 82 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCN 82 (555)
...||+..++++.++||...-.+ ..+... ...++++++++|||+.+.+.+ +.++...++... ||||.-
T Consensus 65 A~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~-~~~gr~tiLflDEIHRfnK~Q---QD~lLp~vE~G~--iilIGA 138 (436)
T COG2256 65 ARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKN-RLLGRRTILFLDEIHRFNKAQ---QDALLPHVENGT--IILIGA 138 (436)
T ss_pred HHHHHHhhCCceEEeccccccHHHHHHHHHHHHHH-HhcCCceEEEEehhhhcChhh---hhhhhhhhcCCe--EEEEec
Confidence 45799999999999999763211 011111 112478999999999997753 568888898766 555543
Q ss_pred C-CCCC---CcCccc-eeEEEecCCCHHHHHHHHHHHHHH--cCCC-----CCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 83 S-NNIT---LPDSLD-RLEVSFTMPMPKDLLSHLQMICAA--EKVE-----LQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 83 D-~n~~---L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~k--Egl~-----Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
. .||. -+.+++ |.++.|++.+.++|...|.+.+.. .|+. ++++.++.|+..++||.|++||.|+....
T Consensus 139 TTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 139 TTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAAL 218 (436)
T ss_pred cCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3 2332 234666 589999999999999999995543 3555 78999999999999999999999998777
Q ss_pred cCC
Q 008751 151 NKG 153 (555)
Q Consensus 151 s~~ 153 (555)
...
T Consensus 219 ~~~ 221 (436)
T COG2256 219 SAE 221 (436)
T ss_pred hcC
Confidence 654
No 59
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=9.7e-07 Score=91.73 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=85.3
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcC
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEK 119 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEg 119 (555)
+.++++|||++|.|..+ ...||.++++. .+.-|||+|++++..++.+++ |..++|.+++.+++..+|..++..++
T Consensus 123 ~~~kVvII~~ae~m~~~---aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~ 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEA---AANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI 199 (314)
T ss_pred CCceEEEEEchhhcCHH---HHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc
Confidence 46899999999999764 67899999985 234599999999888888887 68999999999999999999887665
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 008751 120 VELQQHLLVQLIESCRADIRKTIMHLQFW 148 (555)
Q Consensus 120 l~Id~~~L~~Li~~S~GDIRqaLN~LQf~ 148 (555)
... .+..++..++||.|++++.++.+
T Consensus 200 ~~~---~~~~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 200 LNI---NFPELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred chh---HHHHHHHHcCCCHHHHHHHHHHH
Confidence 542 36788999999999999998764
No 60
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.38 E-value=6.9e-07 Score=84.54 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=75.2
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
..+++||+||+|.|..+ .+.+|.++++.. +.-+||++|+....++.+++ |..+.|.+|+..++..+|...
T Consensus 95 ~~~kviiide~~~l~~~---~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---- 167 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEA---AANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---- 167 (188)
T ss_pred CCeEEEEEechhhhCHH---HHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----
Confidence 36789999999999864 467888888762 35599999987655555665 589999999999998888776
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKT 141 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqa 141 (555)
| ++++.++.|+..++||+|+|
T Consensus 168 g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 168 G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred C--CCHHHHHHHHHHcCCCcccC
Confidence 5 78999999999999999985
No 61
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.32 E-value=8.7e-06 Score=79.12 Aligned_cols=126 Identities=11% Similarity=0.033 Sum_probs=88.7
Q ss_pred hCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCcEEEEecCCCC---C-
Q 008751 15 HADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNI---T- 87 (555)
Q Consensus 15 elGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrPIILtCND~n~---~- 87 (555)
..|..++.+++.+..... . ......+|+|||+|.+.... +.+|..+++ ..+.++|+++++..+ .
T Consensus 68 ~~~~~~~~i~~~~~~~~~----~--~~~~~~~liiDdi~~l~~~~---~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 68 YGGRNARYLDAASPLLAF----D--FDPEAELYAVDDVERLDDAQ---QIALFNLFNRVRAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred hCCCcEEEEehHHhHHHH----h--hcccCCEEEEeChhhcCchH---HHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCC
Confidence 457788888886633210 1 11235799999999987643 234444443 234455555554322 1
Q ss_pred CcCccc----eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 88 LPDSLD----RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 88 L~~l~~----~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
.+++++ +..+++.+|+..+....|..++..+|+.+++++++.|+....||+|+.++.|+.+-
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 122332 36899999999999999999999999999999999999999999999888887654
No 62
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.27 E-value=3.6e-06 Score=80.80 Aligned_cols=132 Identities=13% Similarity=0.163 Sum_probs=91.1
Q ss_pred hCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCcEEEEecCCCCCC---
Q 008751 15 HADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNITL--- 88 (555)
Q Consensus 15 elGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrPIILtCND~n~~L--- 88 (555)
+-|..++.+++++-..+.......+ .+..+|+|||+|.+.... +.+..|..++. ..+.+||++++.....+
T Consensus 64 ~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~lLvIDdi~~l~~~~-~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 64 ERGKSAIYLPLAELAQADPEVLEGL--EQADLVCLDDVEAIAGQP-EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred hcCCcEEEEeHHHHHHhHHHHHhhc--ccCCEEEEeChhhhcCCh-HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence 3467888888866322100011111 234699999999987531 22334444433 34568999998643211
Q ss_pred -cCccc----eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 89 -PDSLD----RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 89 -~~l~~----~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
+.+.+ +..+++.+|+..++...|..++.+.|+.++++.++.|+..+.|++|...+.|+..-
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALD 206 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 23333 25789999999999999999999999999999999999999999999999887533
No 63
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=98.24 E-value=1.1e-05 Score=80.88 Aligned_cols=132 Identities=9% Similarity=0.033 Sum_probs=101.0
Q ss_pred CCceEEEeCCCcc-cc--cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCC--CCc
Q 008751 17 DDEVVEVIHIPDD-EN--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI--TLP 89 (555)
Q Consensus 17 Gy~VIELNASDdR-~r--n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~--~L~ 89 (555)
.++++.+++.+.. .. ......++++ .+++|++++++.+...+ .+.+|.++++. ....+|++++.... .+.
T Consensus 18 ~~~~~~~~~~e~~~~~l~~~~~~~slf~-~~kliii~~~~~~~~~~--~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~ 94 (302)
T TIGR01128 18 EFNVFRIDGEEFDWNQLLEEAQTLPLFS-ERRLVELRNPEGKPGAK--GLKALEEYLANPPPDTLLLIEAPKLDKRKKLT 94 (302)
T ss_pred hheeeeeccCCCCHHHHHHHhhccCccc-CCeEEEEECCCCCCCHH--HHHHHHHHHhcCCCCEEEEEecCCCCHhHHHH
Confidence 5788999988633 21 2333445565 67999999999987432 37788888876 34568888875442 111
Q ss_pred Ccc----ceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 90 DSL----DRLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 90 ~l~----~~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
+.+ .+..+.|.+|+..++..++..++.++|+.++++.++.|+..+++|+|.+.|.|+-.+.-
T Consensus 95 k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~ 160 (302)
T TIGR01128 95 KWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALY 160 (302)
T ss_pred HHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhh
Confidence 222 35789999999999999999999999999999999999999999999999999865553
No 64
>PRK06893 DNA replication initiation factor; Validated
Probab=98.24 E-value=7.6e-06 Score=80.75 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=79.8
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcE-EEEecCCCC----CCcCccce----eEEEecCCCHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPV-ILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSH 110 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPI-ILtCND~n~----~L~~l~~~----l~I~FkrPs~~eI~sr 110 (555)
+..+++|||+|.+... +....++..+++. .+.++ |+++|.... .++++.++ ..+++.+|+.++....
T Consensus 91 ~~dlLilDDi~~~~~~-~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGN-EEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCC-hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 4579999999988643 2223344443332 23344 566666432 23455553 5889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 111 LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 111 L~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
|+..|..+|+.+++++++.|+..+.||+|..++.|+...
T Consensus 170 L~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 170 LQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998653
No 65
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.24 E-value=9e-06 Score=82.12 Aligned_cols=137 Identities=9% Similarity=0.040 Sum_probs=94.5
Q ss_pred hhHHHhhCCCceEEEeCCCcccccccccccC-CCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCC------------
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKS-DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKG------------ 75 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~~v~gsl-~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKr------------ 75 (555)
...+|++++..+...+++........ ...+ .-....+++|||+|.+.... ..++..+++..+.
T Consensus 47 a~~ia~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~vl~iDEi~~l~~~~---~e~l~~~~~~~~~~~v~~~~~~~~~ 122 (305)
T TIGR00635 47 AHIIANEMGVNLKITSGPALEKPGDL-AAILTNLEEGDVLFIDEIHRLSPAV---EELLYPAMEDFRLDIVIGKGPSARS 122 (305)
T ss_pred HHHHHHHhCCCEEEeccchhcCchhH-HHHHHhcccCCEEEEehHhhhCHHH---HHHhhHHHhhhheeeeeccCccccc
Confidence 34789999988888876542211000 0000 01245799999999998642 3445555553332
Q ss_pred ------c--EEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 76 ------P--VILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 76 ------P--IILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
| +|.++|......++++++ ..+.|.+++..++...|..++..+++.++++.++.|+..++||.|.+++.+
T Consensus 123 ~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll 202 (305)
T TIGR00635 123 VRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLL 202 (305)
T ss_pred eeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHH
Confidence 2 333444443333334454 467899999999999999999999999999999999999999999999988
Q ss_pred HHHh
Q 008751 146 QFWC 149 (555)
Q Consensus 146 Qf~s 149 (555)
....
T Consensus 203 ~~~~ 206 (305)
T TIGR00635 203 RRVR 206 (305)
T ss_pred HHHH
Confidence 7543
No 66
>PRK06620 hypothetical protein; Validated
Probab=98.19 E-value=1.4e-05 Score=78.61 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=83.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCCCC--CcCccce----eEEEecCCCHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNIT--LPDSLDR----LEVSFTMPMPKDLLSHLQMICA 116 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n~~--L~~l~~~----l~I~FkrPs~~eI~srL~~Ic~ 116 (555)
...++++||||.+ ++..+...+..+.+. ..+||++++..++. +++++++ +.+.+++|+.+.+...|+..+.
T Consensus 85 ~~d~lliDdi~~~--~~~~lf~l~N~~~e~-g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 85 KYNAFIIEDIENW--QEPALLHIFNIINEK-QKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred cCCEEEEeccccc--hHHHHHHHHHHHHhc-CCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 3469999999965 234455555555554 45788888776542 4556664 5799999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 117 AEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 117 kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
..|+.+++++++.|+..+.||+|..++.|+...
T Consensus 162 ~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 162 ISSVTISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred HcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999754
No 67
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=5.6e-06 Score=88.76 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=79.9
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++++++||||+|.|..+ ...+|.++++.. ++.||++|++....++.+++ |..++|++|+.+++..+|. .++
T Consensus 116 ~~~kViiIDead~m~~~---aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~---~~~ 189 (394)
T PRK07940 116 GRWRIVVIEDADRLTER---AANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLV---RRD 189 (394)
T ss_pred CCcEEEEEechhhcCHH---HHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHH---Hhc
Confidence 46789999999999764 567899999872 56699999998877777787 6899999999999988887 233
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
| ++++.+..++..++|++++++..+
T Consensus 190 ~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 190 G--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4 678889999999999999997654
No 68
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.13 E-value=1.9e-05 Score=81.60 Aligned_cols=135 Identities=10% Similarity=0.052 Sum_probs=94.7
Q ss_pred hhHHHhhCCCceEEEeCCCcccccccccccCC-CCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC-------------
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKSD-NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK------------- 74 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~~v~gsl~-~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK------------- 74 (555)
...+|+++|..+...++...... ....+.+. -....+|+|||||.+..... ..+...++..+
T Consensus 68 a~~ia~~l~~~~~~~~~~~~~~~-~~l~~~l~~l~~~~vl~IDEi~~l~~~~~---e~l~~~~e~~~~~~~l~~~~~~~~ 143 (328)
T PRK00080 68 ANIIANEMGVNIRITSGPALEKP-GDLAAILTNLEEGDVLFIDEIHRLSPVVE---EILYPAMEDFRLDIMIGKGPAARS 143 (328)
T ss_pred HHHHHHHhCCCeEEEecccccCh-HHHHHHHHhcccCCEEEEecHhhcchHHH---HHHHHHHHhcceeeeeccCccccc
Confidence 34789999998888877542211 00011011 12467999999999976422 22334443211
Q ss_pred -----Cc--EEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 75 -----GP--VILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 75 -----rP--IILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
-| +|.++|......++++++ ..++|.+++..++...|...+...++.++++.+..|+..++||.|.+.+.|
T Consensus 144 ~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 144 IRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred eeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHH
Confidence 12 555666654433345555 578999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 008751 146 QF 147 (555)
Q Consensus 146 Qf 147 (555)
+.
T Consensus 224 ~~ 225 (328)
T PRK00080 224 RR 225 (328)
T ss_pred HH
Confidence 85
No 69
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=2.8e-05 Score=77.17 Aligned_cols=107 Identities=20% Similarity=0.212 Sum_probs=84.1
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCCC----CCcCccce----eEEEecCCCHHHHHHHHHHHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQMIC 115 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n~----~L~~l~~~----l~I~FkrPs~~eI~srL~~Ic 115 (555)
..+|++||+|.+...+.++...+..+.+ .+++||++++...+ .+++++++ ..+.+++|+.+.....|+..+
T Consensus 88 ~~~l~iDDi~~~~~~~~~lf~l~n~~~~-~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 88 EGPVLIEDIDAGGFDETGLFHLINSVRQ-AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred cCeEEEECCCCCCCCHHHHHHHHHHHHh-CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 3699999999885444445554555554 46789999987543 34666653 789999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHcCCcHHHHHH---HHHHHhhc
Q 008751 116 AAEKVELQQHLLVQLIESCRADIRKTIM---HLQFWCQN 151 (555)
Q Consensus 116 ~kEgl~Id~~~L~~Li~~S~GDIRqaLN---~LQf~s~s 151 (555)
...|+.+++++++.|+..+.||+|.++. .|..++..
T Consensus 167 ~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~ 205 (226)
T PRK09087 167 ADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALE 205 (226)
T ss_pred HHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 44444443
No 70
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.05 E-value=1.6e-05 Score=79.64 Aligned_cols=135 Identities=11% Similarity=0.108 Sum_probs=89.5
Q ss_pred CceEEEeCCCcccc-----cccccccCCCCCCcEEEEeCCCCCCcc---c--HHHHHHHHHHHHHcCCcEEEEe-cCCC-
Q 008751 18 DEVVEVIHIPDDEN-----SHGVMGKSDNHVKPLILIEDVDVFFPE---D--RGFIAGIQQIAEKAKGPVILTS-NSNN- 85 (555)
Q Consensus 18 y~VIELNASDdR~r-----n~~v~gsl~~~kkkLILiDEVD~Lf~e---D--rGf~sAL~~liekSKrPIILtC-ND~n- 85 (555)
..++|+++++-.++ .......+......+|+|||||.|..+ + +..+.+|.+.++..+.+++++. +...
T Consensus 75 ~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~ 154 (261)
T TIGR02881 75 GHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDE 154 (261)
T ss_pred CceEEecHHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcch
Confidence 46888888763221 011111121223469999999999752 1 2245566666766554444433 2221
Q ss_pred --C---CCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------cCCcHHHHHHHHHHH
Q 008751 86 --I---TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----------CRADIRKTIMHLQFW 148 (555)
Q Consensus 86 --~---~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~----------S~GDIRqaLN~LQf~ 148 (555)
. .-|.++++ ..|.|..++..++...++.++...++.++++.+..|.+. ..||.|.+.|.++..
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a 234 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 1 11334454 578999999999999999999999999999998888543 469999999999986
Q ss_pred hhcC
Q 008751 149 CQNK 152 (555)
Q Consensus 149 s~s~ 152 (555)
...+
T Consensus 235 ~~~~ 238 (261)
T TIGR02881 235 IRRQ 238 (261)
T ss_pred HHHH
Confidence 6544
No 71
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=4.5e-05 Score=81.09 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=80.2
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
..++||||||+|.|.. ..+.+|.++++.- .+-||++|++....++.+++ |..++|.+|+..++...|...
T Consensus 140 ~~~kVviIDead~m~~---~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~---- 212 (365)
T PRK07471 140 GGWRVVIVDTADEMNA---NAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA---- 212 (365)
T ss_pred CCCEEEEEechHhcCH---HHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----
Confidence 4678999999999965 4677888888873 44599999998876666776 689999999999999888764
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
+...++..+..++..++|+.|+++..++
T Consensus 213 ~~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 213 GPDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred cccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 3445566668899999999999999886
No 72
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=3.1e-05 Score=79.53 Aligned_cols=97 Identities=9% Similarity=0.002 Sum_probs=80.4
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++++++|||++|.|+.+ .+.+|.++++. ..+.|||+|+++...++.+++ |..++|.+|+..++..+|.....
T Consensus 92 ~~~kv~iI~~ad~m~~~---a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~-- 166 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQ---AQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN-- 166 (313)
T ss_pred CCceEEEEechhhcCHH---HHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc--
Confidence 47899999999999764 67899999987 345799999988877777787 68999999999999998876442
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
.++++.++.++..++|..++++..+
T Consensus 167 --~~~~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 167 --DIKEEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5778889999999999888887543
No 73
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=3.1e-05 Score=81.03 Aligned_cols=96 Identities=10% Similarity=0.150 Sum_probs=80.5
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++.+++|||++|.|+.+ ...||.+++|. .++.|||+|+.....+|.+++ |..++|.+|+.+++..+|.. .
T Consensus 112 g~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~ 184 (319)
T PRK08769 112 GIAQVVIVDPADAINRA---ACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLA----Q 184 (319)
T ss_pred CCcEEEEeccHhhhCHH---HHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHH----c
Confidence 36799999999999875 67899999997 377899999999988888898 68999999999999999864 3
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
| +++..+..++..++|...+++..++
T Consensus 185 ~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 185 G--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred C--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 4 5666677788899999988876653
No 74
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=3.2e-05 Score=81.01 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=81.7
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++++++|||++|.|+.+ ...+|.++++. .++.|||+|+++...+|.+++ |..++|.+|+.+++..+|...+
T Consensus 105 ~~~kv~iI~~a~~m~~~---aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~--- 178 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRN---AANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL--- 178 (328)
T ss_pred CCCeEEEECChhhCCHH---HHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc---
Confidence 36889999999999875 67899999998 577899999999888888887 6899999999999999997543
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
-..+++.+..++..++|.+++++..++
T Consensus 179 -~~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 179 -PESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred -ccCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 134677777888899999999986653
No 75
>PRK05642 DNA replication initiation factor; Validated
Probab=97.91 E-value=0.00012 Score=72.78 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=81.2
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCcEEEEecCCCC----CCcCccce----eEEEecCCCHHHHHHHHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQ 112 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrPIILtCND~n~----~L~~l~~~----l~I~FkrPs~~eI~srL~ 112 (555)
..+++|||++.+... .....+|-.+++ ..++++|++++...+ .+++++++ ..+.+.+|+.++....|+
T Consensus 98 ~d~LiiDDi~~~~~~-~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YELVCLDDLDVIAGK-ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CCEEEEechhhhcCC-hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 368999999977542 222334444443 245789999987532 24666664 678899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 113 MICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 113 ~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
.-|...|+.+++++++.|++...+|+|..++.|+..-
T Consensus 177 ~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 177 LRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7788889999999999999999999999999998764
No 76
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=2.6e-05 Score=81.92 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=82.5
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++.+++|||++|.|+.+ ...||.+++|. .++=|||+|+++...+|.+++ |..++|.+|+.+++..+|..
T Consensus 107 g~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~----- 178 (334)
T PRK07993 107 GGAKVVWLPDAALLTDA---AANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSR----- 178 (334)
T ss_pred CCceEEEEcchHhhCHH---HHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHH-----
Confidence 47899999999999986 56889898886 345599999999988888898 68899999999999999863
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
...++++.+..++..++|++++|+..++
T Consensus 179 ~~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 179 EVTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred ccCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 3457788888999999999999998765
No 77
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.83 E-value=0.00019 Score=76.32 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=92.1
Q ss_pred CCceEEEeCCCcccc--ccc-------ccccCCCCCCcEEEEeCCCCCCccc---HHHHHHHHHHHHHcCCcEEEEecCC
Q 008751 17 DDEVVEVIHIPDDEN--SHG-------VMGKSDNHVKPLILIEDVDVFFPED---RGFIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 17 Gy~VIELNASDdR~r--n~~-------v~gsl~~~kkkLILiDEVD~Lf~eD---rGf~sAL~~liekSKrPIILtCND~ 84 (555)
|..|+.+++.+-... ... ....+ ....+++|||+|.+...+ ..+...+..+.+. .+++|+++|..
T Consensus 166 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~-~~~iiits~~~ 242 (405)
T TIGR00362 166 NAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN-GKQIVLTSDRP 242 (405)
T ss_pred CCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCCEEEecCCC
Confidence 678899988652110 000 00111 134699999999886531 2244444444443 46899999864
Q ss_pred CC----CCcCccce----eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHH---HHHHHHHHhhc
Q 008751 85 NI----TLPDSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRK---TIMHLQFWCQN 151 (555)
Q Consensus 85 n~----~L~~l~~~----l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRq---aLN~LQf~s~s 151 (555)
.. ..++++++ ..+.|.+|+.++....|+..+...|+.+++++++.|+....+|+|. +|+.|.+++..
T Consensus 243 p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 243 PKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASL 320 (405)
T ss_pred HHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 21 22334443 5799999999999999999999999999999999999999999997 66777766654
No 78
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.83 E-value=9.9e-05 Score=79.74 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=81.8
Q ss_pred CCcEEEEeCCCCCCccc---HHHHHHHHHHHHHcCCcEEEEecCCCCCC----cCccce----eEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPED---RGFIAGIQQIAEKAKGPVILTSNSNNITL----PDSLDR----LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eD---rGf~sAL~~liekSKrPIILtCND~n~~L----~~l~~~----l~I~FkrPs~~eI~srL 111 (555)
+..+++|||+|.+...+ ..+...+..+.+. ..+||+++|.....+ ++++++ +.+.|.+|+.++....|
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~-~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA-GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 35699999999886532 2344445555554 457999988753222 234443 58999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHH---HHHHHHHHhhc
Q 008751 112 QMICAAEKVELQQHLLVQLIESCRADIRK---TIMHLQFWCQN 151 (555)
Q Consensus 112 ~~Ic~kEgl~Id~~~L~~Li~~S~GDIRq---aLN~LQf~s~s 151 (555)
+..+...|+.+++++++.|+..+.||+|. +|+.|.+++..
T Consensus 290 ~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 290 KKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASL 332 (450)
T ss_pred HHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998 55666666543
No 79
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00016 Score=76.06 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=78.4
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++.|++|||++|.|+.+ ...||.++++. .++=|||+|+.+...+|.+++ |..++|.+|+.+++..+|...+.
T Consensus 106 g~~KV~iI~~a~~m~~~---AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEA---AANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-- 180 (325)
T ss_pred CCceEEEEechhhhCHH---HHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc--
Confidence 46899999999999875 67899999987 345699999999888888888 68999999999999999987642
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
.+...+..++..++|...+++..++
T Consensus 181 ---~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 181 ---AEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred ---cChHHHHHHHHHcCCCHHHHHHHhh
Confidence 2344566777788888887776553
No 80
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.74 E-value=9.8e-05 Score=76.24 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=73.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHH--H---cCCcEEEEecCCCC---CCcCccce---eEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE--K---AKGPVILTSNSNNI---TLPDSLDR---LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~lie--k---SKrPIILtCND~n~---~L~~l~~~---l~I~FkrPs~~eI~srL 111 (555)
++.+|||||+|.+...+......|.++.. . .+..+|+++|+... ..+++.++ ..|.|.+++..++...|
T Consensus 129 ~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il 208 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDIL 208 (365)
T ss_pred CeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHH
Confidence 35689999999997544445555555521 1 45678999998742 12223332 46899999999999999
Q ss_pred HHHHHH--cCCCCCHHHHHH---HHHHcCCcHHHHHHHHHHHh
Q 008751 112 QMICAA--EKVELQQHLLVQ---LIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 112 ~~Ic~k--Egl~Id~~~L~~---Li~~S~GDIRqaLN~LQf~s 149 (555)
...+.. .+..+++++++. ++..+.||+|++++.|+...
T Consensus 209 ~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 209 ENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred HHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 988752 233477776655 45556799999999998644
No 81
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.74 E-value=0.00019 Score=79.68 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=81.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc------------------------------CCcEEEEec-CCCCCCcCc
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA------------------------------KGPVILTSN-SNNITLPDS 91 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS------------------------------KrPIILtCN-D~n~~L~~l 91 (555)
...+++|||+|.|... .+..|.++++.- .+.+|++|+ ++....+.+
T Consensus 175 ~gG~L~IdEI~~L~~~---~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paL 251 (531)
T TIGR02902 175 HGGVLFIDEIGELHPV---QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPAL 251 (531)
T ss_pred CCcEEEEechhhCCHH---HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHH
Confidence 3579999999999764 456676666541 124555544 445444555
Q ss_pred cc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 92 LD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 92 ~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
++ |..|.|++++.+++...++..+.++|+.++++.++.|..++. |.|.++|.+|..+.
T Consensus 252 rsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 252 RSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAG 310 (531)
T ss_pred hhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence 56 588999999999999999999999999999999998887765 99999999998764
No 82
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.0001 Score=76.86 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEK 119 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEg 119 (555)
.++++||||+|.|+.+ ...+|.++++. ..+-|||+|++++..++.+++ |..++|++|+..++..+|. ++|
T Consensus 110 ~~kvviI~~a~~~~~~---a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g 182 (329)
T PRK08058 110 NKKVYIIEHADKMTAS---AANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ----EEG 182 (329)
T ss_pred CceEEEeehHhhhCHH---HHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHH----HcC
Confidence 6799999999999875 56799999997 556699999998887788887 6899999999999977775 466
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 120 VELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 120 l~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
+++.....++.. .|.+++++..+.
T Consensus 183 --i~~~~~~~l~~~-~g~~~~A~~l~~ 206 (329)
T PRK08058 183 --ISESLATLLAGL-TNSVEEALALSE 206 (329)
T ss_pred --CChHHHHHHHHH-cCCHHHHHHHhc
Confidence 555555555555 478999886653
No 83
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.00027 Score=77.00 Aligned_cols=106 Identities=16% Similarity=0.268 Sum_probs=83.5
Q ss_pred CCcEEEEeCCCCCCcc---cHHHHHHHHHHHHHcCCcEEEEecCCCC----CCcCccce----eEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e---DrGf~sAL~~liekSKrPIILtCND~n~----~L~~l~~~----l~I~FkrPs~~eI~srL 111 (555)
...++||||++.+... ...+...+..+... ..+||+++|.... ..++++++ +.+.+.+|+.++...+|
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 4579999999998653 22344444444443 5689999987522 22344443 68999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 112 QMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 112 ~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
+..|...|+.+++++++.|+....+|+|+.++.|+..+
T Consensus 281 ~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~ 318 (445)
T PRK12422 281 ERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLA 318 (445)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999775
No 84
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.65 E-value=0.00015 Score=84.70 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=77.0
Q ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHH-----cCCcEEEEecCCC---CCCcCccce---eEEEecCCCHHHHHHHHHH
Q 008751 45 PLILIEDVDVFFPEDRGFIAGIQQIAEK-----AKGPVILTSNSNN---ITLPDSLDR---LEVSFTMPMPKDLLSHLQM 113 (555)
Q Consensus 45 kLILiDEVD~Lf~eDrGf~sAL~~liek-----SKrPIILtCND~n---~~L~~l~~~---l~I~FkrPs~~eI~srL~~ 113 (555)
.||||||||.|...+ ..+|..|++- ++.=||.|+|+.. ..+++++++ ..|.|.+++..++...|..
T Consensus 871 ~IIILDEID~L~kK~---QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 871 SILIIDEIDYLITKT---QKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred eEEEeehHhhhCccH---HHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHH
Confidence 599999999998643 2445544442 3445777888764 233455553 3589999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHH---HcCCcHHHHHHHHHHHhhc
Q 008751 114 ICAAEKVELQQHLLVQLIE---SCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 114 Ic~kEgl~Id~~~L~~Li~---~S~GDIRqaLN~LQf~s~s 151 (555)
-+......+++++|+.++. ...||+|+||..|......
T Consensus 948 RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 948 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred HHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 8875445689999999887 6789999999999876654
No 85
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.64 E-value=0.00041 Score=68.47 Aligned_cols=103 Identities=22% Similarity=0.285 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCCCCCC----cCccc----eeEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNITL----PDSLD----RLEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~n~~L----~~l~~----~l~I~FkrPs~~eI~srL 111 (555)
...+++||++|.+... +..+.++-.+++. ...++|++++.....+ +++++ +..+...+|+.+.....|
T Consensus 97 ~~DlL~iDDi~~l~~~-~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK-QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp TSSEEEEETGGGGTTH-HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred cCCEEEEecchhhcCc-hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 4589999999998764 3333444443332 4568999997753222 33444 378999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 112 QMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 112 ~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
+..+...|+.+++++++.|+....+|+|.....|.
T Consensus 176 ~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 176 QKKAKERGIELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999999999999999999999999987655444
No 86
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.00021 Score=77.64 Aligned_cols=108 Identities=12% Similarity=0.193 Sum_probs=79.4
Q ss_pred CCcEEEEeCCCCCCcc---cHHHHHHHHHHHHHcCCcEEEEecCCCC----CCcCccc----eeEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLD----RLEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e---DrGf~sAL~~liekSKrPIILtCND~n~----~L~~l~~----~l~I~FkrPs~~eI~srL 111 (555)
+..++||||+|.+.+. ...+...+..+.+.. .+||++++.... ..+++++ ...+.+.+|+.+.....|
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 3679999999988643 223555555555543 478888874321 1233444 358999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH---HHHhhc
Q 008751 112 QMICAAEKVELQQHLLVQLIESCRADIRKTIMHL---QFWCQN 151 (555)
Q Consensus 112 ~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L---Qf~s~s 151 (555)
+..+..+++.+++++++.|+....+|+|.....| .+++..
T Consensus 273 ~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~ 315 (440)
T PRK14088 273 RKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKET 315 (440)
T ss_pred HHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765554 444443
No 87
>CHL00181 cbbX CbbX; Provisional
Probab=97.55 E-value=0.0002 Score=73.69 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=94.5
Q ss_pred cccccCchhHHHhhCCC----ceEEEeCCCcccc----c-ccccccCCCCCCcEEEEeCCCCCCcc------cHHHHHHH
Q 008751 2 KSSYTVSLCEAAQHADD----EVVEVIHIPDDEN----S-HGVMGKSDNHVKPLILIEDVDVFFPE------DRGFIAGI 66 (555)
Q Consensus 2 ~~~~~~~~~~iAkelGy----~VIELNASDdR~r----n-~~v~gsl~~~kkkLILiDEVD~Lf~e------DrGf~sAL 66 (555)
||.-|-..+..+...|+ .++|+++++-.+. . ....+.+......+++|||+|.++.. .+..+..|
T Consensus 72 KT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L 151 (287)
T CHL00181 72 KTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEIL 151 (287)
T ss_pred HHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHH
Confidence 44444445555555555 4899997662211 0 00111111123579999999998532 12345566
Q ss_pred HHHHHHcC--CcEEEEecCCCC------CCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---
Q 008751 67 QQIAEKAK--GPVILTSNSNNI------TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES--- 133 (555)
Q Consensus 67 ~~liekSK--rPIILtCND~n~------~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~--- 133 (555)
.++|+..+ +-||++ ++... .-|.++++ ..|.|.+++..++...+..++.+++..++++.+..+...
T Consensus 152 ~~~me~~~~~~~vI~a-g~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~ 230 (287)
T CHL00181 152 LQVMENQRDDLVVIFA-GYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKK 230 (287)
T ss_pred HHHHhcCCCCEEEEEe-CCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 66676532 334444 33211 11334444 589999999999999999999999999999888777664
Q ss_pred -----cCCcHHHHHHHHHHHhhcC
Q 008751 134 -----CRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 134 -----S~GDIRqaLN~LQf~s~s~ 152 (555)
.-|+.|..-|.++.....+
T Consensus 231 ~~~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 231 RMEQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred hCCCCCCccHHHHHHHHHHHHHHH
Confidence 3478898888888766554
No 88
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.52 E-value=8.1e-05 Score=79.70 Aligned_cols=142 Identities=14% Similarity=0.160 Sum_probs=93.5
Q ss_pred cccccCchhHHHhhCCCceEEEeCCCcccc------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCC
Q 008751 2 KSSYTVSLCEAAQHADDEVVEVIHIPDDEN------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKG 75 (555)
Q Consensus 2 ~~~~~~~~~~iAkelGy~VIELNASDdR~r------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKr 75 (555)
||+-|-.+-.-++.-.|.+||+.|.....+ ..+........++++++||||+..-+.+ +..+...++...
T Consensus 175 KTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ---QD~fLP~VE~G~- 250 (554)
T KOG2028|consen 175 KTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ---QDTFLPHVENGD- 250 (554)
T ss_pred hHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh---hhcccceeccCc-
Confidence 334343344445555688999999773321 1112222233478999999999986642 234445555544
Q ss_pred cEEEEe-cCCCC--CCc-Cccc-eeEEEecCCCHHHHHHHHHHH-H---HHcC---------CCCCHHHHHHHHHHcCCc
Q 008751 76 PVILTS-NSNNI--TLP-DSLD-RLEVSFTMPMPKDLLSHLQMI-C---AAEK---------VELQQHLLVQLIESCRAD 137 (555)
Q Consensus 76 PIILtC-ND~n~--~L~-~l~~-~l~I~FkrPs~~eI~srL~~I-c---~kEg---------l~Id~~~L~~Li~~S~GD 137 (555)
|+||- +..|+ .+- .+++ |.+|-..+.+.++++..|++- + ..|. +.+++.+|+.|+..+.||
T Consensus 251 -I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGD 329 (554)
T KOG2028|consen 251 -ITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGD 329 (554)
T ss_pred -eEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCch
Confidence 44443 22233 222 3455 789999999999999999983 3 2333 257889999999999999
Q ss_pred HHHHHHHHHHH
Q 008751 138 IRKTIMHLQFW 148 (555)
Q Consensus 138 IRqaLN~LQf~ 148 (555)
-|.+||.||..
T Consensus 330 aR~aLN~Lems 340 (554)
T KOG2028|consen 330 ARAALNALEMS 340 (554)
T ss_pred HHHHHHHHHHH
Confidence 99999999976
No 89
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.00057 Score=74.55 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=81.3
Q ss_pred CCcEEEEeCCCCCCcc---cHHHHHHHHHHHHHcCCcEEEEecCCCCCC----cCccce----eEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNNITL----PDSLDR----LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e---DrGf~sAL~~liekSKrPIILtCND~n~~L----~~l~~~----l~I~FkrPs~~eI~srL 111 (555)
...++||||++.+... ...|...+..+... +.+||+++|.....+ ++++++ +.+.+.+|+.++...+|
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~-~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN-DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 3569999999988642 22344445555543 448999998753222 334443 68899999999999999
Q ss_pred HHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 112 QMICAAEKV--ELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 112 ~~Ic~kEgl--~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
+..+...|+ .+++++++.|+..+.||+|..++.|....
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLN 324 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 999999886 69999999999999999999999987543
No 90
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.51 E-value=0.00044 Score=72.29 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=74.4
Q ss_pred CCcEEEEeCCCCCCc-ccHHHHHHHHHHHHH---cCCcEEEEecCCCC--CC-cCccc---eeEEEecCCCHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFP-EDRGFIAGIQQIAEK---AKGPVILTSNSNNI--TL-PDSLD---RLEVSFTMPMPKDLLSHLQ 112 (555)
Q Consensus 43 kkkLILiDEVD~Lf~-eDrGf~sAL~~liek---SKrPIILtCND~n~--~L-~~l~~---~l~I~FkrPs~~eI~srL~ 112 (555)
+..+|+|||+|.+.. .+...+.++.+.+.. ++..+|+++|+... .+ ++..+ ...|.|.+++..++...|+
T Consensus 138 ~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred CEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 346899999999972 233345555554443 24569999998641 11 11222 2578999999999999999
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHH
Q 008751 113 MICAAE--KVELQQHLLVQLIESC---RADIRKTIMHLQFW 148 (555)
Q Consensus 113 ~Ic~kE--gl~Id~~~L~~Li~~S---~GDIRqaLN~LQf~ 148 (555)
.-+... +..+++++++.+++.+ .||+|+++..|...
T Consensus 218 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 218 DRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred HHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 877542 2357899999888777 89999999999653
No 91
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.00032 Score=73.59 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=76.7
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
+..+++|||++|.|..+ ...||.++++. .++=|||+|+++...+|.+++ |..++|.+|+.+++..+|.. +
T Consensus 107 ~~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~----~ 179 (319)
T PRK06090 107 NGYRLFVIEPADAMNES---ASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKG----Q 179 (319)
T ss_pred CCceEEEecchhhhCHH---HHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHH----c
Confidence 46799999999999875 57899999987 345599999999988898898 68999999999999998863 4
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
|+. ....++..++|...+++..++
T Consensus 180 ~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 180 GIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred CCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 554 234667788999999886653
No 92
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=97.47 E-value=0.00031 Score=64.85 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=83.0
Q ss_pred CceEEEeCCCcccc---cccccccCCCCCCcEEEEeCCCCCCc-ccHHHHHHHHHHHHH--cCCcEEEEec-CCCC--CC
Q 008751 18 DEVVEVIHIPDDEN---SHGVMGKSDNHVKPLILIEDVDVFFP-EDRGFIAGIQQIAEK--AKGPVILTSN-SNNI--TL 88 (555)
Q Consensus 18 y~VIELNASDdR~r---n~~v~gsl~~~kkkLILiDEVD~Lf~-eDrGf~sAL~~liek--SKrPIILtCN-D~n~--~L 88 (555)
++++.+.++++-.. ......++++ .+++|++.++..+.+ .....+.+|.+++++ ..+.+|+.++ ..+. .+
T Consensus 30 ~~~~~~~~~~~~~~~l~~~~~s~slF~-~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~ 108 (172)
T PF06144_consen 30 FNVIVFDGSEDDIDELLEELQSPSLFG-DKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKL 108 (172)
T ss_dssp EEEEE-STTS-HHH-HTTTSTTTTSSS-SEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHH
T ss_pred ceEEEEccccCcHHHHHHHHhcCCccC-CCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhH
Confidence 56677777663221 3344555666 678999999944411 122246777777765 4566888888 2221 11
Q ss_pred cCccc--eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 89 PDSLD--RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 89 ~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
.+.+. ...+.|.+|...++..+++..+.+.|+.+++++++.|++..++|++.+.+.|+-.+
T Consensus 109 ~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 109 YKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp HHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 12222 46799999999999999999999999999999999999999999999999998654
No 93
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.31 E-value=0.00039 Score=65.51 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=56.9
Q ss_pred hCCCceEEEeCCCc---ccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEec
Q 008751 15 HADDEVVEVIHIPD---DEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSN 82 (555)
Q Consensus 15 elGy~VIELNASDd---R~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCN 82 (555)
....++++++.... +.. ......+ ...+++++||||+|.|+.+ .+.||.++++.- .+-|||+|+
T Consensus 65 ~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~-~~~~~KviiI~~ad~l~~~---a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 65 GNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP-SEGKYKVIIIDEADKLTEE---AQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp T-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS--TTSSSEEEEEETGGGS-HH---HHHHHHHHHHSTTTTEEEEEEES
T ss_pred ccCcceEEEecccccchhhHHHHHHHHHHHHHHH-hcCCceEEEeehHhhhhHH---HHHHHHHHhcCCCCCEEEEEEEC
Confidence 33567888877653 111 1111112 2346899999999999876 689999999973 667999999
Q ss_pred CCCCCCcCccc-eeEEEecCCC
Q 008751 83 SNNITLPDSLD-RLEVSFTMPM 103 (555)
Q Consensus 83 D~n~~L~~l~~-~l~I~FkrPs 103 (555)
+.+..++.+++ |..++|++.+
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 99988888888 6899998753
No 94
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.00099 Score=70.59 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++.+++|||++|.|..+ ...+|.++++. .++-|||+|+++...+|.+++ |..++|++|+.+++..+|...
T Consensus 131 ~~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~---- 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVA---AANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ---- 203 (342)
T ss_pred CCceEEEEechhhcCHH---HHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----
Confidence 46799999999999875 57888888886 455699999999988888888 689999999999999999753
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
|+ ++ .+.++..++|...+++..+
T Consensus 204 ~~--~~--~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 204 GV--AD--ADALLAEAGGAPLAALALA 226 (342)
T ss_pred CC--Ch--HHHHHHHcCCCHHHHHHHH
Confidence 33 33 2345667889888888655
No 95
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0012 Score=68.60 Aligned_cols=94 Identities=12% Similarity=0.154 Sum_probs=74.4
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
+.++++|||++|.|+.+ ...||.++++. ..+=|||+|+.+.+.++.+++ |..++|.+++..++..+|..-
T Consensus 89 ~~~KvvII~~~e~m~~~---a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~---- 161 (299)
T PRK07132 89 SQKKILIIKNIEKTSNS---LLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK---- 161 (299)
T ss_pred CCceEEEEecccccCHH---HHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc----
Confidence 47899999999999764 56789999987 344599999988777777777 789999999999999998742
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
| ++++....++..++ ++.+|+..+
T Consensus 162 ~--~~~~~a~~~a~~~~-~~~~a~~~~ 185 (299)
T PRK07132 162 N--KEKEYNWFYAYIFS-NFEQAEKYI 185 (299)
T ss_pred C--CChhHHHHHHHHcC-CHHHHHHHH
Confidence 3 66676666666666 488888764
No 96
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.25 E-value=0.0032 Score=64.37 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=89.7
Q ss_pred CCceEEEeCCCcc-cc--cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc---CCc-EEEE-e-cCCCC-
Q 008751 17 DDEVVEVIHIPDD-EN--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---KGP-VILT-S-NSNNI- 86 (555)
Q Consensus 17 Gy~VIELNASDdR-~r--n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS---KrP-IILt-C-ND~n~- 86 (555)
.++++.+.+++.. .. ......++++ .+++|++++++.+.... ...++..+.+.. ..+ +|++ . +...+
T Consensus 48 ~~~~~~~d~~~~~~~~l~~~~~t~~lF~-~~klvii~~~~~l~~~~--~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~ 124 (340)
T PRK05574 48 ERNVFTFDGSETDWDDVLEACQSLPLFS-DRKLVELRLPEFLTGAK--GEKALKRLEAYLNPLPHPDLLLIVRLPKLDKA 124 (340)
T ss_pred eeeEEEeecCCCCHHHHHHHhhccCccc-cCeEEEEECCCCCCchh--HHHHHHHHHHhccCCCCCcEEEEEECCcCCHH
Confidence 4567777776422 21 2344455665 67899999999886531 233455554421 111 3333 3 33221
Q ss_pred -CC---cCccc--eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 87 -TL---PDSLD--RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 87 -~L---~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
.+ -+.+. +..+.|.+++..++..++..+|.++|+.++++.++.|++..++|++.+.+.|+-.+.
T Consensus 125 ~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l 194 (340)
T PRK05574 125 KKKSAWFKALKKKAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLAL 194 (340)
T ss_pred HHhhHHHHHHHhCceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 11 11222 578899999999999999999999999999999999999999999999999986654
No 97
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.21 E-value=0.0031 Score=71.44 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=78.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC----------------------------CcEEEEecC---CCCCCcCc
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK----------------------------GPVILTSNS---NNITLPDS 91 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK----------------------------rPIILtCND---~n~~L~~l 91 (555)
...+++|||++.|.. ..+..|.++++..+ ..||+++.. .....+.+
T Consensus 265 sgGvL~LDEi~~Ld~---~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aL 341 (615)
T TIGR02903 265 HGGVLFIDEIGELDP---LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPAL 341 (615)
T ss_pred CCCeEEEeccccCCH---HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHH
Confidence 356999999999954 45677777776422 247777533 33223345
Q ss_pred cc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 92 LD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 92 ~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
++ +..+.|.+.+..++...+..++.++++.+++++++.|..++. |-|+++|.|+..+
T Consensus 342 rSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~ 399 (615)
T TIGR02903 342 RSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVY 399 (615)
T ss_pred HhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 55 467899999999999999999999999999999988887764 8899999998654
No 98
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.21 E-value=0.0021 Score=64.98 Aligned_cols=135 Identities=10% Similarity=0.039 Sum_probs=88.9
Q ss_pred chhHHHhhCCCceEEEeCCCc-ccc--cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCC---------
Q 008751 8 SLCEAAQHADDEVVEVIHIPD-DEN--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKG--------- 75 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDd-R~r--n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKr--------- 75 (555)
....||+++|.++..++|..- +.. ..... .+ .++.+++|||++.+.... +.+|...|+..+.
T Consensus 66 LA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~-~l--~~~~ILFIDEIHRlnk~~---qe~LlpamEd~~idiiiG~g~~ 139 (233)
T PF05496_consen 66 LARIIANELGVNFKITSGPAIEKAGDLAAILT-NL--KEGDILFIDEIHRLNKAQ---QEILLPAMEDGKIDIIIGKGPN 139 (233)
T ss_dssp HHHHHHHHCT--EEEEECCC--SCHHHHHHHH-T----TT-EEEECTCCC--HHH---HHHHHHHHHCSEEEEEBSSSSS
T ss_pred HHHHHHhccCCCeEeccchhhhhHHHHHHHHH-hc--CCCcEEEEechhhccHHH---HHHHHHHhccCeEEEEeccccc
Confidence 356899999999999999541 111 11111 11 256799999999998752 4677888885322
Q ss_pred ---------c--EEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Q 008751 76 ---------P--VILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTI 142 (555)
Q Consensus 76 ---------P--IILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaL 142 (555)
| +|-.++.....-.+++++ ...++..-+.+++...+..-+..-|+.|+++....|+..|.|+-|=|.
T Consensus 140 ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 140 ARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp -BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHH
T ss_pred cceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHH
Confidence 2 333344444333345666 455788899999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 008751 143 MHLQFW 148 (555)
Q Consensus 143 N~LQf~ 148 (555)
+.|..+
T Consensus 220 rll~rv 225 (233)
T PF05496_consen 220 RLLRRV 225 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 99
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.19 E-value=0.00088 Score=68.66 Aligned_cols=152 Identities=11% Similarity=0.097 Sum_probs=95.3
Q ss_pred cccccCchhHHHhhCCC----ceEEEeCCCcccc----c-ccccccCCCCCCcEEEEeCCCCCCcc------cHHHHHHH
Q 008751 2 KSSYTVSLCEAAQHADD----EVVEVIHIPDDEN----S-HGVMGKSDNHVKPLILIEDVDVFFPE------DRGFIAGI 66 (555)
Q Consensus 2 ~~~~~~~~~~iAkelGy----~VIELNASDdR~r----n-~~v~gsl~~~kkkLILiDEVD~Lf~e------DrGf~sAL 66 (555)
||.-|......+...|+ .++++++++-... . ..+.+.+......+++|||+|.|... .+..+..|
T Consensus 71 KT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~L 150 (284)
T TIGR02880 71 KTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEIL 150 (284)
T ss_pred HHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHH
Confidence 33333333344444554 6899998652211 0 00111122223579999999988421 12245567
Q ss_pred HHHHHHcCC-cEEEEecCCCC------CCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----
Q 008751 67 QQIAEKAKG-PVILTSNSNNI------TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES---- 133 (555)
Q Consensus 67 ~~liekSKr-PIILtCND~n~------~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~---- 133 (555)
.++++..+. .+|+.+...+. .-|.+.++ ..|.|..++..++...+...+.+.+..++++.+..+..+
T Consensus 151 l~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~ 230 (284)
T TIGR02880 151 LQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALR 230 (284)
T ss_pred HHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHh
Confidence 777765432 23333433221 01223343 579999999999999999999999999999999888775
Q ss_pred ----cCCcHHHHHHHHHHHhhcCC
Q 008751 134 ----CRADIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 134 ----S~GDIRqaLN~LQf~s~s~~ 153 (555)
.-|+.|..-|.++.+...+.
T Consensus 231 ~~~~~~GN~R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 231 RTQPHFANARSIRNAIDRARLRQA 254 (284)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHH
Confidence 35999999999998776553
No 100
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.14 E-value=0.0019 Score=74.79 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=83.6
Q ss_pred chhHHHhhCCCceEEEeCCCccc------c-cccc---ccc----C--CCCCCcEEEEeCCCCCCcccHH-HHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDE------N-SHGV---MGK----S--DNHVKPLILIEDVDVFFPEDRG-FIAGIQQIA 70 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~------r-n~~v---~gs----l--~~~kkkLILiDEVD~Lf~eDrG-f~sAL~~li 70 (555)
....+|+.+|..++.++++..+. . ...+ .+. + .+..+.+|||||+|.+..+.+| -.++|.+++
T Consensus 363 lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~l 442 (775)
T TIGR00763 363 LGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVL 442 (775)
T ss_pred HHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhc
Confidence 34578999999999999875321 0 0111 010 0 1224569999999999764222 245677666
Q ss_pred HH-----------------cCCcEEEEecCCCCCCcCccce-eEEEecCCCHHHHHHHHHHHH-----H-----HcCCCC
Q 008751 71 EK-----------------AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMIC-----A-----AEKVEL 122 (555)
Q Consensus 71 ek-----------------SKrPIILtCND~n~~L~~l~~~-l~I~FkrPs~~eI~srL~~Ic-----~-----kEgl~I 122 (555)
.. +++.||+|+|.....-+.++++ ..|.|..++..+....+.... . .+++.+
T Consensus 443 d~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~ 522 (775)
T TIGR00763 443 DPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKI 522 (775)
T ss_pred CHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEE
Confidence 42 4567888999876544556665 678999999877666554432 2 235689
Q ss_pred CHHHHHHHHHHc
Q 008751 123 QQHLLVQLIESC 134 (555)
Q Consensus 123 d~~~L~~Li~~S 134 (555)
+++.+..|+...
T Consensus 523 ~~~~l~~i~~~~ 534 (775)
T TIGR00763 523 TDEALLLLIKYY 534 (775)
T ss_pred CHHHHHHHHHhc
Confidence 999999999753
No 101
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.11 E-value=0.0034 Score=71.25 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=80.2
Q ss_pred CCcEEEEeCCCCCCcc---cHHHHHHHHHHHHHcCCcEEEEecCCCC----CCcCccce----eEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e---DrGf~sAL~~liekSKrPIILtCND~n~----~L~~l~~~----l~I~FkrPs~~eI~srL 111 (555)
+..++||||++.+... +..|...+..+.+. +.+||+++|..-. ..++++++ +.+.+..|+.+.....|
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~-gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA-NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhc-CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3579999999988653 23344555555443 5689999987521 23345543 78999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 112 QMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 112 ~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
+..+...|+.+++++++.|+....+|+|.....|..
T Consensus 456 ~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~r 491 (617)
T PRK14086 456 RKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIR 491 (617)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999999999999999999987665553
No 102
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.00071 Score=67.23 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=80.1
Q ss_pred EEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-ee-------------EEEecCCCHHHHHHH
Q 008751 47 ILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RL-------------EVSFTMPMPKDLLSH 110 (555)
Q Consensus 47 ILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l-------------~I~FkrPs~~eI~sr 110 (555)
+|+++||.|+.+ .+.||.++++. .+.=|||+|++++..+|.+++ |. .+.|++.+..++..+
T Consensus 58 ~iI~~a~~l~~~---A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~ 134 (206)
T PRK08485 58 IIVIAAPSYGIE---AQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEF 134 (206)
T ss_pred EEEEchHhhCHH---HHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHH
Confidence 457899999875 67888888886 345599999999988888887 33 378999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 111 LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 111 L~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
|.. ..+|++.-.++.++.|...+.|-+|.+|..++
T Consensus 135 L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~ 169 (206)
T PRK08485 135 LKE-LEKENKLSKEELKELIESLLKECVKYKIPLNE 169 (206)
T ss_pred HHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccH
Confidence 999 78999988899999999999999999975543
No 103
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.07 E-value=0.0019 Score=69.74 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=85.9
Q ss_pred CchhHHHhhCCCceEEEeCCCccc-------c------cccccccCCCCCCcEEEEeCCCCCCcc---cHHH------HH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDE-------N------SHGVMGKSDNHVKPLILIEDVDVFFPE---DRGF------IA 64 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~-------r------n~~v~gsl~~~kkkLILiDEVD~Lf~e---DrGf------~s 64 (555)
+...++|+++|.+++-++|++=-+ + ..+....-...++.+|+|||+|.+... +++. .+
T Consensus 163 llAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~ 242 (413)
T PLN00020 163 FQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNG 242 (413)
T ss_pred HHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHH
Confidence 445689999999999999987221 1 000000001236789999999987652 1111 13
Q ss_pred HHHHHHH----------------HcCCcEEEEecCCCCCCcCccc--eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 008751 65 GIQQIAE----------------KAKGPVILTSNSNNITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHL 126 (555)
Q Consensus 65 AL~~lie----------------kSKrPIILtCND~n~~L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~ 126 (555)
.|..++. ...+|||.|+|+++..-+.++. ++.-.|..|+.++-...|+.++++.++ +...
T Consensus 243 tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l--~~~d 320 (413)
T PLN00020 243 TLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGV--SRED 320 (413)
T ss_pred HHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCC--CHHH
Confidence 3444331 2457999999999864455554 555556689999999999999988655 5889
Q ss_pred HHHHHHHcCC
Q 008751 127 LVQLIESCRA 136 (555)
Q Consensus 127 L~~Li~~S~G 136 (555)
+.+|+....|
T Consensus 321 v~~Lv~~f~g 330 (413)
T PLN00020 321 VVKLVDTFPG 330 (413)
T ss_pred HHHHHHcCCC
Confidence 9999988644
No 104
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.04 E-value=0.0043 Score=64.32 Aligned_cols=127 Identities=10% Similarity=0.047 Sum_probs=93.5
Q ss_pred CceEEEeCCCcc---cc--cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCC--CC
Q 008751 18 DEVVEVIHIPDD---EN--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI--TL 88 (555)
Q Consensus 18 y~VIELNASDdR---~r--n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~--~L 88 (555)
++++++.+.+.. .. +.....++++ .+++|++...+ ..+..+|..++++ ....+|+.+....+ .+
T Consensus 52 fn~~~~~~~e~~~~~~~~~~~~~t~slF~-~~rlViv~~~~------~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl 124 (343)
T PRK06585 52 FAVVRLDGDDLDADPARLEDEANAISLFG-GRRLIWVRAGS------KNLAAALKALLESPPGDAFIVIEAGDLKKGSSL 124 (343)
T ss_pred cceeeccHHHhhcCHHHHHHHHhCCCCCC-CceEEEEECCc------hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHH
Confidence 677888776532 11 3444556666 56899999542 3456788888876 23457777655432 22
Q ss_pred cCccc----eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 89 PDSLD----RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 89 ~~l~~----~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
.+.+. ...+.|.+|+..++..+++..|.++|+.|+++.++.|++.+++|++.+.+.|+-.+..
T Consensus 125 ~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly 191 (343)
T PRK06585 125 RKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALY 191 (343)
T ss_pred HHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 23332 2568899999999999999999999999999999999999999999999999876654
No 105
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0022 Score=66.63 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++++++|||++|.|+.+ ...||.++++. .++=|||+|++.+..+|.+++ |..|+|.+ +.+++.. ++..+
T Consensus 103 ~~~kV~II~~ad~m~~~---AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~----~L~~~ 174 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN---AANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQ----LLEQK 174 (290)
T ss_pred CCcEEEEeehhhhcCHH---HHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHH----HHHHc
Confidence 36799999999999875 57889999987 234599999999988999998 68999965 5555544 44567
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
|+. ......++ ...|.+.+++..+
T Consensus 175 g~~--~~~a~~la-~~~~s~~~A~~l~ 198 (290)
T PRK07276 175 GLL--KTQAELLA-KLAQSTSEAEKLA 198 (290)
T ss_pred CCC--hHHHHHHH-HHCCCHHHHHHHh
Confidence 754 33333344 3345788888766
No 106
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.02 E-value=0.0022 Score=67.02 Aligned_cols=62 Identities=10% Similarity=0.038 Sum_probs=54.8
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAE------KVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE------gl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
+.+++ |..+.|++++.+++...|.+.+..+ .+.++++.++.|+..++||.|++||.|+....
T Consensus 25 ~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 25 DALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLLERMFL 93 (300)
T ss_pred HhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45666 6899999999999999999998753 36899999999999999999999999999664
No 107
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.00 E-value=0.00058 Score=59.26 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=60.8
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-----c----ccccccCCCCCCcEEEEeCCCCCCccc--------HHHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-----S----HGVMGKSDNHVKPLILIEDVDVFFPED--------RGFIAGIQQIAE 71 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-----n----~~v~gsl~~~kkkLILiDEVD~Lf~eD--------rGf~sAL~~lie 71 (555)
+..+|+.+|+.++++++++.... . ..........++.+|+|||+|.++... +....+|...+.
T Consensus 15 ~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~ 94 (132)
T PF00004_consen 15 ARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLD 94 (132)
T ss_dssp HHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccccccccccccceeeeccc
Confidence 45789999999999999884421 0 000000001136899999999998754 455667777776
Q ss_pred Hc-----CCcEEEEecCCCCCCcCcc-ceeEEEe
Q 008751 72 KA-----KGPVILTSNSNNITLPDSL-DRLEVSF 99 (555)
Q Consensus 72 kS-----KrPIILtCND~n~~L~~l~-~~l~I~F 99 (555)
+. ++.||++||+.....+.++ +++..+|
T Consensus 95 ~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i 128 (132)
T PF00004_consen 95 NPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRI 128 (132)
T ss_dssp TTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEE
T ss_pred ccccccccceeEEeeCChhhCCHhHHhCCCcEEE
Confidence 53 3589999999776666666 6654444
No 108
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=96.99 E-value=0.0069 Score=62.26 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=92.1
Q ss_pred CCceEEEeCCCccc--c--cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecC-CCC--C
Q 008751 17 DDEVVEVIHIPDDE--N--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNS-NNI--T 87 (555)
Q Consensus 17 Gy~VIELNASDdR~--r--n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND-~n~--~ 87 (555)
.+++.++++.+... . ....+-+++ ..+++|++++++.+......++.+|.++++. ...-+|+++.. ..+ .
T Consensus 32 ~fn~~~~d~~~~~~~~~~~~~~~t~pff-~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k 110 (326)
T PRK07452 32 SFNYSRLDGDDADQAIQALNEAMTPPFG-SGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLK 110 (326)
T ss_pred hcchhhcCCccchHHHHHHHHhcCCCCC-CCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHH
Confidence 46778888776421 1 122223344 4689999999876543344577889999886 22335554433 221 1
Q ss_pred CcCccc--eeEEEecCC---CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 88 LPDSLD--RLEVSFTMP---MPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 88 L~~l~~--~l~I~FkrP---s~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
+.+.+. +....|..+ ..+++..+++..+.++|+.|+++.++.|++..++|++.+.+.|+-.+.-
T Consensus 111 ~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly 179 (326)
T PRK07452 111 STKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALY 179 (326)
T ss_pred HHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHh
Confidence 122222 356677666 3467999999999999999999999999999999999999999976653
No 109
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.0032 Score=65.53 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=65.5
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++++++|||++|.|+.+ .+.||.++++. .++-|||+|+.++..+|.+++ |..++|.++ +
T Consensus 94 ~~~kv~ii~~ad~mt~~---AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~---------------~ 155 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD---AISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME---------------E 155 (290)
T ss_pred CCceEEEEechhhcCHH---HHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch---------------h
Confidence 47899999999999976 67899999997 355699999999988888887 688999775 3
Q ss_pred CCCCCHHHHHHHHHHcCCcHH
Q 008751 119 KVELQQHLLVQLIESCRADIR 139 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIR 139 (555)
...++++.+..++..++|+++
T Consensus 156 ~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 156 KTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred ccCCCHHHHHHHHHHhCCChh
Confidence 335778888888888888774
No 110
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.50 E-value=0.0075 Score=65.02 Aligned_cols=102 Identities=19% Similarity=0.275 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCC-----------CC-CCc-Cccc-eeEEEecCCCHHHHHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN-----------NI-TLP-DSLD-RLEVSFTMPMPKDLLS 109 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~-----------n~-~L~-~l~~-~l~I~FkrPs~~eI~s 109 (555)
+.+++||||+.| |--+.+-|.+.++..-.|||+.+++. ++ .+| ++++ ++.|+-.+.+.+++..
T Consensus 279 pGVLFIDEvHmL---DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~ 355 (398)
T PF06068_consen 279 PGVLFIDEVHML---DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQ 355 (398)
T ss_dssp E-EEEEESGGGS---BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHH
T ss_pred cceEEecchhhc---cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHH
Confidence 479999999999 66688899999999888987776553 11 223 3556 5789999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHH
Q 008751 110 HLQMICAAEKVELQQHLLVQLIES-CRADIRKTIMHLQFW 148 (555)
Q Consensus 110 rL~~Ic~kEgl~Id~~~L~~Li~~-S~GDIRqaLN~LQf~ 148 (555)
.|..=|..|++.++++.++.|... .+.-+|.|++.|...
T Consensus 356 Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 356 ILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred HHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 999999999999999999998765 467899999888653
No 111
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.0086 Score=61.63 Aligned_cols=95 Identities=13% Similarity=0.074 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCC----------CHHHHH
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMP----------MPKDLL 108 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrP----------s~~eI~ 108 (555)
+.++++||+++|.|..+ .+.||.++++. .+.=|||+|++.+..++.+++ |..+.|.++ ...++.
T Consensus 87 ~~~KV~II~~ae~m~~~---AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~ 163 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQ---SANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQ 163 (261)
T ss_pred CCCEEEEeccHhhhCHH---HHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHH
Confidence 46899999999999875 57888888886 445599999999988898998 578888777 333333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 008751 109 SHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148 (555)
Q Consensus 109 srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~ 148 (555)
..|. +...+++ +++..++|++.+++..++.+
T Consensus 164 ~~L~-----~~~~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 164 YILL-----SFYSVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred HHHH-----HccCccH----HHHHHcCCCHHHHHHHHHHH
Confidence 3221 1223444 67778899999999999965
No 112
>CHL00176 ftsH cell division protein; Validated
Probab=96.33 E-value=0.013 Score=66.91 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=90.2
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~lie 71 (555)
...++|++.|..++++++++-... ...+...+ ....+.+|+|||+|.+... .......|.+++.
T Consensus 232 LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 311 (638)
T CHL00176 232 LAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLT 311 (638)
T ss_pred HHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 456889999999999999873211 00011000 1235679999999988531 2223455666653
Q ss_pred H-------cCCcEEEEecCCCCCCcCccc----eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----
Q 008751 72 K-------AKGPVILTSNSNNITLPDSLD----RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA---- 136 (555)
Q Consensus 72 k-------SKrPIILtCND~n~~L~~l~~----~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G---- 136 (555)
. ..+-||.++|.+...-+.++. ...|.|..|+..+-...|+..+.... ..++..+..|+..+.|
T Consensus 312 ~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~~d~~l~~lA~~t~G~sga 390 (638)
T CHL00176 312 EMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LSPDVSLELIARRTPGFSGA 390 (638)
T ss_pred hhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cchhHHHHHHHhcCCCCCHH
Confidence 2 233466677775422122332 26799999999999988888877633 2345668888887666
Q ss_pred cHHHHHHHHHHHhh
Q 008751 137 DIRKTIMHLQFWCQ 150 (555)
Q Consensus 137 DIRqaLN~LQf~s~ 150 (555)
||+..+|..-..+.
T Consensus 391 DL~~lvneAal~a~ 404 (638)
T CHL00176 391 DLANLLNEAAILTA 404 (638)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999997665543
No 113
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.31 E-value=0.026 Score=65.90 Aligned_cols=136 Identities=16% Similarity=0.182 Sum_probs=88.0
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-------cccc---cccC------CCCCCcEEEEeCCCCCCcccHH-HHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-------SHGV---MGKS------DNHVKPLILIEDVDVFFPEDRG-FIAGIQQIAE 71 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-------n~~v---~gsl------~~~kkkLILiDEVD~Lf~eDrG-f~sAL~~lie 71 (555)
...+|+.+|.+++.++++..+.- .... .|.+ .+....+|||||+|.+....+| ..+||.+++.
T Consensus 366 ~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld 445 (784)
T PRK10787 366 GQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLD 445 (784)
T ss_pred HHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhc
Confidence 34678899999999998774421 1111 1110 1124569999999999875333 3678888876
Q ss_pred H-----------------cCCcEEEEecCCCCCCcCccce-eEEEecCCCHHHHHHHHHHHH-----HHc-----CCCCC
Q 008751 72 K-----------------AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMIC-----AAE-----KVELQ 123 (555)
Q Consensus 72 k-----------------SKrPIILtCND~n~~L~~l~~~-l~I~FkrPs~~eI~srL~~Ic-----~kE-----gl~Id 123 (555)
. +++=+|+|+|+.+ .-++++++ ..|.|..++.+++......-. .+. .+.++
T Consensus 446 ~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~ 524 (784)
T PRK10787 446 PEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVD 524 (784)
T ss_pred cccEEEEecccccccccCCceEEEEcCCCCC-CCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEEC
Confidence 4 5555777777764 33345575 678999999887755443332 222 35789
Q ss_pred HHHHHHHHHHc-----CCcHHHHHHHH
Q 008751 124 QHLLVQLIESC-----RADIRKTIMHL 145 (555)
Q Consensus 124 ~~~L~~Li~~S-----~GDIRqaLN~L 145 (555)
+++++.|+..+ -+++++.|..+
T Consensus 525 ~~ai~~ii~~yt~e~GaR~LeR~I~~i 551 (784)
T PRK10787 525 DSAIIGIIRYYTREAGVRSLEREISKL 551 (784)
T ss_pred HHHHHHHHHhCCcccCCcHHHHHHHHH
Confidence 99999999753 35666666553
No 114
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.31 E-value=0.016 Score=57.27 Aligned_cols=102 Identities=8% Similarity=0.052 Sum_probs=69.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH---c--CCcEEEEecCC-----C-CCCcCccce--eEEEecCCCHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---A--KGPVILTSNSN-----N-ITLPDSLDR--LEVSFTMPMPKDLLS 109 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek---S--KrPIILtCND~-----n-~~L~~l~~~--l~I~FkrPs~~eI~s 109 (555)
+..+|||||+|.+.... +..|..+... . ..+||++.... . +....+.++ ..+.+.+.+.+++..
T Consensus 123 ~~~vliiDe~~~l~~~~---~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 123 KRALLVVDEAQNLTPEL---LEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCeEEEEECcccCCHHH---HHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 55799999999997543 3444443321 1 23566765432 1 111112232 467889999999999
Q ss_pred HHHHHHHHcC----CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 110 HLQMICAAEK----VELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 110 rL~~Ic~kEg----l~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
++...+..-| ..++++.++.|...++|+.|..-..+..
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~ 241 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDR 241 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 9998887655 4689999999999999999995444443
No 115
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.31 E-value=0.011 Score=63.15 Aligned_cols=142 Identities=16% Similarity=0.191 Sum_probs=89.5
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCc--------ccHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFP--------EDRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~--------eDrGf~sAL~~lie 71 (555)
...++|++++..++++++++-..+ ...+...+ ....+.+|+|||+|.++. +++..++.+.+++.
T Consensus 181 lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 260 (389)
T PRK03992 181 LAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA 260 (389)
T ss_pred HHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHH
Confidence 456889999999999999873211 01111111 123467999999999853 13445666777664
Q ss_pred H-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH----cC
Q 008751 72 K-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQ-HLLVQLIES----CR 135 (555)
Q Consensus 72 k-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~-~~L~~Li~~----S~ 135 (555)
. .+..||+++|.....-+.++. + ..|.|..|+..+-...|+..+..-++ +. -.+..|+.. +.
T Consensus 261 ~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~--~~~~~~~~la~~t~g~sg 338 (389)
T PRK03992 261 EMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL--ADDVDLEELAELTEGASG 338 (389)
T ss_pred hccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC--CCcCCHHHHHHHcCCCCH
Confidence 3 245688888887532222332 2 47999999999888888876654433 32 234555554 56
Q ss_pred CcHHHHHHHHHHHhhc
Q 008751 136 ADIRKTIMHLQFWCQN 151 (555)
Q Consensus 136 GDIRqaLN~LQf~s~s 151 (555)
+||+..+...-+.+..
T Consensus 339 adl~~l~~eA~~~a~~ 354 (389)
T PRK03992 339 ADLKAICTEAGMFAIR 354 (389)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899887776665544
No 116
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.29 E-value=0.012 Score=63.53 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=91.0
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCc--------ccHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFP--------EDRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~--------eDrGf~sAL~~lie 71 (555)
...++|++++..++.+.+++-..+ ...+...+ ....+.+|+|||+|.++. .|+..++.+.+++.
T Consensus 195 LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~ 274 (398)
T PTZ00454 195 LAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLN 274 (398)
T ss_pred HHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHH
Confidence 346789999999999988763221 00000000 123578999999998853 14445566666665
Q ss_pred H-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HcCC
Q 008751 72 K-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIE----SCRA 136 (555)
Q Consensus 72 k-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~----~S~G 136 (555)
. ..+.||+++|.+...-+.++. + ..|.|..|+..+-...++.++.+.++.- +-.+..++. .+..
T Consensus 275 ~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~sga 353 (398)
T PTZ00454 275 QMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKISAA 353 (398)
T ss_pred HhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCCHH
Confidence 3 245688888887643333332 2 5799999999988888887776655532 123445554 3578
Q ss_pred cHHHHHHHHHHHhhcC
Q 008751 137 DIRKTIMHLQFWCQNK 152 (555)
Q Consensus 137 DIRqaLN~LQf~s~s~ 152 (555)
||+...+.-...+...
T Consensus 354 DI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 354 DIAAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8888877766555433
No 117
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.029 Score=61.13 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=85.8
Q ss_pred CcEEEEeCCCCCCcc---cHHHHHHHHHHHHHcCCcEEEEecCCCC----CCcCccc----eeEEEecCCCHHHHHHHHH
Q 008751 44 KPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLD----RLEVSFTMPMPKDLLSHLQ 112 (555)
Q Consensus 44 kkLILiDEVD~Lf~e---DrGf~sAL~~liekSKrPIILtCND~n~----~L~~l~~----~l~I~FkrPs~~eI~srL~ 112 (555)
-.+++|||++.+... +..|-..+..+....| -||+|+..... ..+++++ ++.+...+|+.+.....|+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 469999999998775 7788888899888877 58888866532 3345555 3789999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 113 MICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 113 ~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
.-+...|+.++++++..|+....+|+|.....|..
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~ 289 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNR 289 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999999999999999999987666543
No 118
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.05 E-value=0.014 Score=64.71 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=85.6
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc-----cHHHHHH----HHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE-----DRGFIAG----IQQIA 70 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e-----DrGf~sA----L~~li 70 (555)
...++|+++|..++.++.++-..+ .......+ ....+.+|+|||+|.++.+ |.|.... +...+
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l 354 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWL 354 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHH
Confidence 456899999999999998762211 00000000 1235689999999987652 4443332 23333
Q ss_pred HH--cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH----cCCcHH
Q 008751 71 EK--AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE-LQQHLLVQLIES----CRADIR 139 (555)
Q Consensus 71 ek--SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~-Id~~~L~~Li~~----S~GDIR 139 (555)
.. ..+.||.|+|++...-+.++. + ..|.+..|+..+-...++..+.+-+.. ..+..++.|+.. +++||+
T Consensus 355 ~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~ 434 (489)
T CHL00195 355 SEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE 434 (489)
T ss_pred hcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHH
Confidence 32 234566777877642223322 3 578999999887777777666664432 234456666665 677999
Q ss_pred HHHHHHHHHh
Q 008751 140 KTIMHLQFWC 149 (555)
Q Consensus 140 qaLN~LQf~s 149 (555)
+++..--..+
T Consensus 435 ~lv~eA~~~A 444 (489)
T CHL00195 435 QSIIEAMYIA 444 (489)
T ss_pred HHHHHHHHHH
Confidence 9887654433
No 119
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.00 E-value=0.016 Score=60.98 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=85.6
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCc--------ccHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFP--------EDRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~--------eDrGf~sAL~~lie 71 (555)
...++|++++..++.+.+++-..+ .......+ ....+.+|+|||+|.++. +|+..+..+.+++.
T Consensus 172 lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~ 251 (364)
T TIGR01242 172 LAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA 251 (364)
T ss_pred HHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHH
Confidence 346789999999999987663221 00011101 112457999999998853 23444556666654
Q ss_pred H-------cCCcEEEEecCCCCCCcCccc----eeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH-cCCc
Q 008751 72 K-------AKGPVILTSNSNNITLPDSLD----RLEVSFTMPMPKDLLSHLQMICAAEKVE--LQQHLLVQLIES-CRAD 137 (555)
Q Consensus 72 k-------SKrPIILtCND~n~~L~~l~~----~l~I~FkrPs~~eI~srL~~Ic~kEgl~--Id~~~L~~Li~~-S~GD 137 (555)
. .++.||+++|.....-+.++. ...|.|..|+..+-...+...+..-++. ++...+..+..+ +++|
T Consensus 252 ~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~d 331 (364)
T TIGR01242 252 ELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGAD 331 (364)
T ss_pred HhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHH
Confidence 2 355688899987532222332 2478999999988888877665443332 333444444433 3458
Q ss_pred HHHHHHHHHHHhh
Q 008751 138 IRKTIMHLQFWCQ 150 (555)
Q Consensus 138 IRqaLN~LQf~s~ 150 (555)
|+..+..--+.+.
T Consensus 332 l~~l~~~A~~~a~ 344 (364)
T TIGR01242 332 LKAICTEAGMFAI 344 (364)
T ss_pred HHHHHHHHHHHHH
Confidence 9887766555443
No 120
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.96 E-value=0.0098 Score=62.52 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=57.2
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHH
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQM 113 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~ 113 (555)
++++++|+|++|+|.. ..+.++.++++.- .+.||+++++....++.+++ |..++|.+|+.+++..+|..
T Consensus 112 ~~~kV~iiEp~~~Ld~---~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 112 GGLRVILIHPAESMNL---QAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCceEEEEechhhCCH---HHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 4689999999999954 5778898888873 46699999998866666666 78999999999999999963
No 121
>PRK07914 hypothetical protein; Reviewed
Probab=95.82 E-value=0.076 Score=55.09 Aligned_cols=129 Identities=9% Similarity=0.002 Sum_probs=91.0
Q ss_pred CCceEEEeCCCccc-c-cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc---CCcEEEEecCCCC--CCc
Q 008751 17 DDEVVEVIHIPDDE-N-SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---KGPVILTSNSNNI--TLP 89 (555)
Q Consensus 17 Gy~VIELNASDdR~-r-n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS---KrPIILtCND~n~--~L~ 89 (555)
.++++.+++.+... . ......++++ .+++|+++++..+.+ ....+|..+++.. .+ +||+++...+ .+-
T Consensus 37 ~~n~~~~d~~~~~~~~i~~~~t~plF~-~rRlV~v~~~~~~~~---~~~~~l~~~l~~~~~~t~-lil~~~~~~~~kk~~ 111 (320)
T PRK07914 37 DVPVSRMRAGDVSTYELAELLSPSLFA-EERVVVLEAAAEAGK---DAAALILSAAADLPPGTV-LVVVHSGGGRAKALA 111 (320)
T ss_pred CCceEEeccccCCHHHHHHhcCCCCCC-CceEEEEeChHhccH---HHHHHHHHHHhCCCCCeE-EEEEecCCcchhHHH
Confidence 56788888866331 1 1222445665 678999999865543 2456788888752 22 4444433211 111
Q ss_pred C-ccc-e-eEEEecCC-CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 90 D-SLD-R-LEVSFTMP-MPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 90 ~-l~~-~-l~I~FkrP-s~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
+ +.. . ..+.|.+| ...++..+++..+++.|+.|+++.++.|++..++|++..-+.|+-.+.
T Consensus 112 K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~ 176 (320)
T PRK07914 112 NQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVA 176 (320)
T ss_pred HHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhc
Confidence 1 222 2 47899988 999999999999999999999999999999999999999999996554
No 122
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.021 Score=61.40 Aligned_cols=146 Identities=18% Similarity=0.256 Sum_probs=100.7
Q ss_pred cCchhHHHhhCCCceEEEeCCCcc----cc-cccccccC---CCCCCcEEEEeCCCCCC--------cccHHHHHHHHHH
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPDD----EN-SHGVMGKS---DNHVKPLILIEDVDVFF--------PEDRGFIAGIQQI 69 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDdR----~r-n~~v~gsl---~~~kkkLILiDEVD~Lf--------~eDrGf~sAL~~l 69 (555)
++...++|++.+..+|-+.+|.=. +. ...+..-| ..+.+.+|+|||+|.+- .+|+--++.+.++
T Consensus 199 TLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleL 278 (406)
T COG1222 199 TLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLEL 278 (406)
T ss_pred HHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHH
Confidence 466789999999999999999821 11 11111111 12468899999999873 2488888899998
Q ss_pred HHH-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH-cC
Q 008751 70 AEK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKV--ELQQHLLVQLIES-CR 135 (555)
Q Consensus 70 iek-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl--~Id~~~L~~Li~~-S~ 135 (555)
+.. ..+.||+.+|.++..=|.++. + -.|.|..|+...=...|.-.+.+.++ .++-+.|.++... ++
T Consensus 279 L~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sG 358 (406)
T COG1222 279 LNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSG 358 (406)
T ss_pred HHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCch
Confidence 886 467899999998743333332 3 57999999987777777777777766 3555666666554 45
Q ss_pred CcHHHHHHHHHHHhhc
Q 008751 136 ADIRKTIMHLQFWCQN 151 (555)
Q Consensus 136 GDIRqaLN~LQf~s~s 151 (555)
.||+.+-..--+++..
T Consensus 359 AdlkaictEAGm~AiR 374 (406)
T COG1222 359 ADLKAICTEAGMFAIR 374 (406)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 6777766555555443
No 123
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.80 E-value=0.053 Score=58.57 Aligned_cols=100 Identities=20% Similarity=0.329 Sum_probs=81.1
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCC-----------CC-CCc-Cccce-eEEEecCCCHHHHHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN-----------NI-TLP-DSLDR-LEVSFTMPMPKDLLS 109 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~-----------n~-~L~-~l~~~-l~I~FkrPs~~eI~s 109 (555)
+.+++||||+.| |--..+-|.+-++.-=.|||+.+++. +| .+| +++++ +.|+-++-+..+|+.
T Consensus 292 pGVLFIDEvHmL---DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~Eire 368 (450)
T COG1224 292 PGVLFIDEVHML---DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIRE 368 (450)
T ss_pred cceEEEechhhh---hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHH
Confidence 579999999999 44466777888888778998888664 11 233 35676 677888888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHH
Q 008751 110 HLQMICAAEKVELQQHLLVQLIES-CRADIRKTIMHLQ 146 (555)
Q Consensus 110 rL~~Ic~kEgl~Id~~~L~~Li~~-S~GDIRqaLN~LQ 146 (555)
.|..=|+-|++.++++.++.|... ...-+|.+++.|.
T Consensus 369 Ii~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~ 406 (450)
T COG1224 369 IIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLT 406 (450)
T ss_pred HHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhcc
Confidence 999999999999999999999876 4678999999987
No 124
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.76 E-value=0.013 Score=64.39 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=83.6
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc-c-------HHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE-D-------RGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e-D-------rGf~sAL~~lie 71 (555)
...++|++++..++++++++-.+. .......+ ....+.+|+|||+|.++.. + ......+.+++.
T Consensus 104 la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 104 LAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 183 (495)
T ss_pred HHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHh
Confidence 456889999999999999873211 00011101 1235679999999998642 1 112234444433
Q ss_pred H-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCC
Q 008751 72 K-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----CRA 136 (555)
Q Consensus 72 k-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~----S~G 136 (555)
. .++-||.++|.+...-+.++. + ..|.|..|+..+-...|...+...++. ++..+..|+.. +.+
T Consensus 184 ~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 184 EMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGA 262 (495)
T ss_pred hhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHH
Confidence 2 234466667776432222332 2 578999999888777777666554442 23345566655 558
Q ss_pred cHHHHHHHHHHHh
Q 008751 137 DIRKTIMHLQFWC 149 (555)
Q Consensus 137 DIRqaLN~LQf~s 149 (555)
||+..++..-..+
T Consensus 263 dl~~l~~eA~~~a 275 (495)
T TIGR01241 263 DLANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988654433
No 125
>PRK05629 hypothetical protein; Validated
Probab=95.69 E-value=0.12 Score=53.51 Aligned_cols=129 Identities=9% Similarity=0.008 Sum_probs=91.0
Q ss_pred CCceEEEeCCCcc-cc-cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc---CCcEEEEecCCCCC--Cc
Q 008751 17 DDEVVEVIHIPDD-EN-SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---KGPVILTSNSNNIT--LP 89 (555)
Q Consensus 17 Gy~VIELNASDdR-~r-n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS---KrPIILtCND~n~~--L~ 89 (555)
.++++++++.+.. .. ......++++ .+++|+++..+...+ . ...++..++... .+ +||++...... +-
T Consensus 37 ~~n~~~~d~~e~~~~~l~~~~t~slF~-~~rlV~v~~~~~~~~--~-~~~~l~~~l~~~~~~~~-Lil~~~~~~~~kk~~ 111 (318)
T PRK05629 37 SLQVTTLKASEVSQGELLDALSPSLFG-EDRVIVLTNMEQAGK--E-PTDLALSAAVDPSPGIY-LIIMHSGGGRTKSMV 111 (318)
T ss_pred CCceEEeecccCCHHHHHHhhCcCccC-CceEEEEeChHhcCh--h-HHHHHHHHHhCCCCCeE-EEEEcCCcchhhHHH
Confidence 4789999988633 21 1122455666 678999999876322 1 344566666542 22 55566433211 11
Q ss_pred -Cccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 90 -DSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 90 -~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
.+.. ...+.|.+|...++..++...++++|+.|+++.++.|+..+++|++..-+.|+-.+.
T Consensus 112 K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~ 174 (318)
T PRK05629 112 PKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVE 174 (318)
T ss_pred HHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHh
Confidence 1222 467899999999999999999999999999999999999999999999999997654
No 126
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.065 Score=57.44 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=75.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCc-----EEEEecCCC---CCCcCccc---eeEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGP-----VILTSNSNN---ITLPDSLD---RLEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrP-----IILtCND~n---~~L~~l~~---~l~I~FkrPs~~eI~srL 111 (555)
+.-+|++||+|.|.+.+. ..|..|.+-...+ +|.+.|+.. ...+++.+ ...|.|.+-+..||...|
T Consensus 123 ~~~IvvLDEid~L~~~~~---~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il 199 (366)
T COG1474 123 KTVIVILDEVDALVDKDG---EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDIL 199 (366)
T ss_pred CeEEEEEcchhhhccccc---hHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHH
Confidence 456999999999998654 5666666654444 888888864 12233333 256999999999999998
Q ss_pred HHHHHH--cCCCCCHHHHHHH---HHHcCCcHHHHHHHHHHHhhcC
Q 008751 112 QMICAA--EKVELQQHLLVQL---IESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 112 ~~Ic~k--Egl~Id~~~L~~L---i~~S~GDIRqaLN~LQf~s~s~ 152 (555)
..=+.. ..-.+++++++.+ +....||.|++|-.|.......
T Consensus 200 ~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 200 RERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 865542 2235667666655 4556779999999998866543
No 127
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.22 E-value=0.11 Score=55.16 Aligned_cols=106 Identities=22% Similarity=0.310 Sum_probs=82.5
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCC-----------CC-CCc-Cccce-eEEEecCCCHHHHHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN-----------NI-TLP-DSLDR-LEVSFTMPMPKDLLS 109 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~-----------n~-~L~-~l~~~-l~I~FkrPs~~eI~s 109 (555)
+.++++|||+.| |--+.+-|++-++.-=.|||+.+++. ++ .+| +++++ +.|.-.+-+..++..
T Consensus 289 pGVLFIDEvHML---DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~ 365 (454)
T KOG2680|consen 289 PGVLFIDEVHML---DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKK 365 (454)
T ss_pred cceEEEeeehhh---hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHH
Confidence 579999999998 44466677777777778999887553 22 233 34565 678888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHhhcC
Q 008751 110 HLQMICAAEKVELQQHLLVQLIES-CRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 110 rL~~Ic~kEgl~Id~~~L~~Li~~-S~GDIRqaLN~LQf~s~s~ 152 (555)
.|.-=|..|.+.++++.++.|... ..--+|.+|+.+-......
T Consensus 366 IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~ 409 (454)
T KOG2680|consen 366 ILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVC 409 (454)
T ss_pred HHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999988765 3567999999987655443
No 128
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.93 E-value=0.029 Score=61.53 Aligned_cols=143 Identities=13% Similarity=0.158 Sum_probs=86.5
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~lie 71 (555)
...++|++++..++++++++-..+ ...+...+ ....+.+|+|||+|.++.. ++..+..+..++.
T Consensus 233 LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~ 312 (438)
T PTZ00361 233 LAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLN 312 (438)
T ss_pred HHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHH
Confidence 456889999999999998873211 00111111 1135679999999988531 2333445555553
Q ss_pred H-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHcCC
Q 008751 72 K-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLI----ESCRA 136 (555)
Q Consensus 72 k-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li----~~S~G 136 (555)
. ..+.||+++|.....-+.++. + ..|.|..|+..+....|.....+..+.-+ -.+..++ ..+..
T Consensus 313 ~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d-vdl~~la~~t~g~sgA 391 (438)
T PTZ00361 313 QLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED-VDLEEFIMAKDELSGA 391 (438)
T ss_pred HHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC-cCHHHHHHhcCCCCHH
Confidence 2 355788888887532222332 2 57999999998888888876655544211 1234444 45677
Q ss_pred cHHHHHHHHHHHhhc
Q 008751 137 DIRKTIMHLQFWCQN 151 (555)
Q Consensus 137 DIRqaLN~LQf~s~s 151 (555)
||+..+...-..+..
T Consensus 392 dI~~i~~eA~~~Alr 406 (438)
T PTZ00361 392 DIKAICTEAGLLALR 406 (438)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877665444443
No 129
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=94.61 E-value=0.45 Score=49.65 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=82.6
Q ss_pred ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-CCcEEEEe-cCCCC--CCcCccc----eeEEEecCCCH
Q 008751 33 HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-KGPVILTS-NSNNI--TLPDSLD----RLEVSFTMPMP 104 (555)
Q Consensus 33 ~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-KrPIILtC-ND~n~--~L~~l~~----~l~I~FkrPs~ 104 (555)
.....++++ .+++|++.+.....+ +-+.+|..++++. ..-+|+.+ ++..+ .+.+.+. ...+.|.+|+.
T Consensus 62 ~~~t~plF~-~~rlViv~~~~~~~~---~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~ 137 (328)
T PRK08487 62 FLSQSSLFG-GKNLLIIKLDKKIPK---KELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNA 137 (328)
T ss_pred HHhcccccC-CceEEEEecccccCH---HHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCH
Confidence 334455666 568888887654432 2346777777642 22255443 33322 1112332 24689999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC
Q 008751 105 KDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 105 ~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~~ 153 (555)
.++..+++..++++|+.|++++++.|+...++|++.+-+.|+-.+.-.+
T Consensus 138 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~ 186 (328)
T PRK08487 138 REALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE 186 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999997666543
No 130
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=94.42 E-value=0.098 Score=53.96 Aligned_cols=69 Identities=6% Similarity=0.035 Sum_probs=55.7
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHH
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQM 113 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~ 113 (555)
++.+++||+++|.|..+ +..||.++++. .+.=|||+|++....+|.+++ |..++|+.|...........
T Consensus 88 g~~KViII~~ae~mt~~---AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~ 159 (263)
T PRK06581 88 SGYKVAIIYSAELMNLN---AANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQ 159 (263)
T ss_pred CCcEEEEEechHHhCHH---HHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHH
Confidence 47899999999999875 67889898886 345589999999888888887 68999999988655554443
No 131
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=93.68 E-value=0.37 Score=51.34 Aligned_cols=101 Identities=18% Similarity=0.313 Sum_probs=79.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCC------------CC-CC-cCccce-eEEEecCCCHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN------------NI-TL-PDSLDR-LEVSFTMPMPKDL 107 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~------------n~-~L-~~l~~~-l~I~FkrPs~~eI 107 (555)
-+.+++||||+.| |--+...|.+-++..=-|||+-+... .+ .+ ++++++ ..|+-.+-+..++
T Consensus 296 vPGVLFIDEVhML---DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~ 372 (456)
T KOG1942|consen 296 VPGVLFIDEVHML---DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEI 372 (456)
T ss_pred cCcceEeeehhhh---hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHH
Confidence 3689999999998 55577788888887777876665443 11 12 245666 5678888889999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHH
Q 008751 108 LSHLQMICAAEKVELQQHLLVQLIES-CRADIRKTIMHLQ 146 (555)
Q Consensus 108 ~srL~~Ic~kEgl~Id~~~L~~Li~~-S~GDIRqaLN~LQ 146 (555)
+..+..=+..||+.++++.+..+.+. +..-+|.++..|-
T Consensus 373 r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~ 412 (456)
T KOG1942|consen 373 RQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT 412 (456)
T ss_pred HHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcC
Confidence 99999999999999999999999874 5778999998775
No 132
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.36 E-value=0.26 Score=56.45 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=87.1
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~lie 71 (555)
...++|+++|..++.+++++-... ...+...+ ....+.+|+|||+|.+... .......+.+++.
T Consensus 201 ~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~ 280 (644)
T PRK10733 201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV 280 (644)
T ss_pred HHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 345789999999999999873321 00000000 1235679999999998542 1112234444432
Q ss_pred H-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----
Q 008751 72 K-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA---- 136 (555)
Q Consensus 72 k-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G---- 136 (555)
. ..+-+|.+||.+...-+.++. + ..|.|..|+..+-...|.....+..+.- +-.+..|+..+.|
T Consensus 281 ~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sga 359 (644)
T PRK10733 281 EMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPGFSGA 359 (644)
T ss_pred hhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCHH
Confidence 1 223455567776532233332 3 5788999998877777776665433321 2235678888777
Q ss_pred cHHHHHHHHHHHhhcC
Q 008751 137 DIRKTIMHLQFWCQNK 152 (555)
Q Consensus 137 DIRqaLN~LQf~s~s~ 152 (555)
||+..++.....+...
T Consensus 360 dl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 360 DLANLVNEAALFAARG 375 (644)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999998776654
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.35 E-value=0.14 Score=59.17 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=80.4
Q ss_pred chhHHHhhCCCceEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCCcc-----cHHH-HHHHHHHHHH-
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE-----DRGF-IAGIQQIAEK- 72 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r----n-~~v~gsl---~~~kkkLILiDEVD~Lf~e-----DrGf-~sAL~~liek- 72 (555)
...++|+++|.+++.+++++-.++ . ..+...+ ....+.+|+|||+|.++.. +.+. .+.+.+++..
T Consensus 503 lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~l 582 (733)
T TIGR01243 503 LAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEM 582 (733)
T ss_pred HHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHh
Confidence 456899999999999999873221 0 0111101 1235689999999998642 1111 2233434332
Q ss_pred ------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH----cCCc
Q 008751 73 ------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIES----CRAD 137 (555)
Q Consensus 73 ------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~-~L~~Li~~----S~GD 137 (555)
.+.-||.++|.+...-+.++. + ..|.|..|+..+-...++.... ++.++++ .++.|+.. ++.|
T Consensus 583 dg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~--~~~~~~~~~l~~la~~t~g~sgad 660 (733)
T TIGR01243 583 DGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR--SMPLAEDVDLEELAEMTEGYTGAD 660 (733)
T ss_pred hcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc--CCCCCccCCHHHHHHHcCCCCHHH
Confidence 234477777776543333332 3 5789999998777776664433 4444332 35566654 5678
Q ss_pred HHHHHHHHHH
Q 008751 138 IRKTIMHLQF 147 (555)
Q Consensus 138 IRqaLN~LQf 147 (555)
|......-..
T Consensus 661 i~~~~~~A~~ 670 (733)
T TIGR01243 661 IEAVCREAAM 670 (733)
T ss_pred HHHHHHHHHH
Confidence 8776654443
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.11 E-value=0.13 Score=59.52 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=86.6
Q ss_pred CCceEEEeCCCcc------c----ccccccccCCCCCCcEEEEeCCCCCCcc------cHHHHHHHHHHHHHcCCcEEEE
Q 008751 17 DDEVVEVIHIPDD------E----NSHGVMGKSDNHVKPLILIEDVDVFFPE------DRGFIAGIQQIAEKAKGPVILT 80 (555)
Q Consensus 17 Gy~VIELNASDdR------~----rn~~v~gsl~~~kkkLILiDEVD~Lf~e------DrGf~sAL~~liekSKrPIILt 80 (555)
|+.++++|.+.-. + +-..+........+.+++|||+|.++.. +......|...++..+.-+|-+
T Consensus 238 ~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~Iga 317 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGS 317 (731)
T ss_pred CCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEe
Confidence 8889999965421 1 0000111111224679999999988642 1112345667777666677887
Q ss_pred ecCC--CCCC--c-Cccce-eEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC---c---HHHHHHH
Q 008751 81 SNSN--NITL--P-DSLDR-LEVSFTMPMPKDLLSHLQMICAA----EKVELQQHLLVQLIESCRA---D---IRKTIMH 144 (555)
Q Consensus 81 CND~--n~~L--~-~l~~~-l~I~FkrPs~~eI~srL~~Ic~k----Egl~Id~~~L~~Li~~S~G---D---IRqaLN~ 144 (555)
+|.. ++.+ . .+..+ ..|.+..|+..+....|+.+..+ .++.++++.|..++..+++ | -+++|..
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~l 397 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDV 397 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHH
Confidence 7762 1111 1 12233 57999999999999999987754 3578999999999987654 3 5788988
Q ss_pred HHHHhh
Q 008751 145 LQFWCQ 150 (555)
Q Consensus 145 LQf~s~ 150 (555)
|.-.+.
T Consensus 398 ld~a~a 403 (731)
T TIGR02639 398 IDEAGA 403 (731)
T ss_pred HHHhhh
Confidence 876554
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.96 E-value=0.3 Score=56.41 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=76.7
Q ss_pred chhHHHhhCCCceEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~rn-----~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~lie 71 (555)
...++|++++..++++|+++-..+. ......+ ....+.+|+|||+|.+... ++..+..|..++.
T Consensus 228 laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld 307 (733)
T TIGR01243 228 LAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMD 307 (733)
T ss_pred HHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhh
Confidence 4567899999999999987622210 0000000 1234679999999988642 2445666766665
Q ss_pred H----cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcH
Q 008751 72 K----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQ-QHLLVQLIESCRADI 138 (555)
Q Consensus 72 k----SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id-~~~L~~Li~~S~GDI 138 (555)
. .++-||.++|.+...-+.++. + ..+.|..|+..+-...|+..+ .++.+. +..++.+++.+.|=.
T Consensus 308 ~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~--~~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 308 GLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHT--RNMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred ccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh--cCCCCccccCHHHHHHhCCCCC
Confidence 3 223344466665432222222 2 578899999888777777433 345553 344777777766533
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.82 E-value=0.66 Score=53.82 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=86.3
Q ss_pred chhHHHhhCCCceEEEeCCCcccc---cccc---cc------------cCCCCCCcEEEEeCCCCCCcccHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN---SHGV---MG------------KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQI 69 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r---n~~v---~g------------sl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~l 69 (555)
...++|+.++..++-++.|+..+. .... .| .+.....++|||||||.+.. ..+..|.++
T Consensus 500 lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---~~~~~Ll~~ 576 (731)
T TIGR02639 500 LAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---DIYNILLQV 576 (731)
T ss_pred HHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---HHHHHHHHh
Confidence 345789999999999999874332 0000 01 01113468999999998854 478888998
Q ss_pred HHHc-------------CCcEEEEecCCCC-------------------------CCcCccce--eEEEecCCCHHHHHH
Q 008751 70 AEKA-------------KGPVILTSNSNNI-------------------------TLPDSLDR--LEVSFTMPMPKDLLS 109 (555)
Q Consensus 70 iekS-------------KrPIILtCND~n~-------------------------~L~~l~~~--l~I~FkrPs~~eI~s 109 (555)
+... ++=||+|+|--.. ..|.++.+ ..|.|++.+.+++..
T Consensus 577 ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~ 656 (731)
T TIGR02639 577 MDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEK 656 (731)
T ss_pred hccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHH
Confidence 8753 2237777765321 11223344 478999999988877
Q ss_pred HHHHHHH-------HcC--CCCCHHHHHHHHHHc------CCcHHHHHH
Q 008751 110 HLQMICA-------AEK--VELQQHLLVQLIESC------RADIRKTIM 143 (555)
Q Consensus 110 rL~~Ic~-------kEg--l~Id~~~L~~Li~~S------~GDIRqaLN 143 (555)
.+..... ..| +.+++++++.|++.. .+.||++|.
T Consensus 657 Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 657 IVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQ 705 (731)
T ss_pred HHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHH
Confidence 7765543 222 577899999999863 445666664
No 137
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.56 Score=51.90 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=82.7
Q ss_pred hhHHHhhCCCceEEEeCCCcccc---cccccccCCCCCCcEEEEeCCCCCCc----------ccHH--HHHHHHHHHH--
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN---SHGVMGKSDNHVKPLILIEDVDVFFP----------EDRG--FIAGIQQIAE-- 71 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r---n~~v~gsl~~~kkkLILiDEVD~Lf~----------eDrG--f~sAL~~lie-- 71 (555)
+-|+|++++|+|.-|+-+..... ++.... ...+++|||||||--++ +++| ..-+|..+++
T Consensus 252 IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~---t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfi 328 (457)
T KOG0743|consen 252 IAAMANYLNYDIYDLELTEVKLDSDLRHLLLA---TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFL 328 (457)
T ss_pred HHHHHhhcCCceEEeeeccccCcHHHHHHHHh---CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhh
Confidence 56899999999999998775433 233333 22578999999997654 1221 1113333333
Q ss_pred -----Hc--CCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHH--------------HHcCCCCCHHH
Q 008751 72 -----KA--KGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMIC--------------AAEKVELQQHL 126 (555)
Q Consensus 72 -----kS--KrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic--------------~kEgl~Id~~~ 126 (555)
.- -|=||||+|...+.=|.++. + .+|.+...+...+..-..... .-++..++|..
T Consensus 329 DGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~ 408 (457)
T KOG0743|consen 329 DGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQ 408 (457)
T ss_pred ccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHH
Confidence 22 45689999998654444443 3 677777666655443333221 34567888866
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHh
Q 008751 127 LVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 127 L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
+....-.++.|.-.+|..|=-..
T Consensus 409 V~e~lm~~~~dad~~lk~Lv~~l 431 (457)
T KOG0743|consen 409 VAEELMKNKNDADVALKGLVEAL 431 (457)
T ss_pred HHHHHhhccccHHHHHHHHHHHH
Confidence 66554455447777776664333
No 138
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.01 E-value=1 Score=42.47 Aligned_cols=97 Identities=12% Similarity=0.246 Sum_probs=62.7
Q ss_pred CcEEEEeCCCCCC---cccHHHHHHHHHHHHH----cCCcEEEEecCCC------CCCcCccce-eEEEecCCCHHHHHH
Q 008751 44 KPLILIEDVDVFF---PEDRGFIAGIQQIAEK----AKGPVILTSNSNN------ITLPDSLDR-LEVSFTMPMPKDLLS 109 (555)
Q Consensus 44 kkLILiDEVD~Lf---~eDrGf~sAL~~liek----SKrPIILtCND~n------~~L~~l~~~-l~I~FkrPs~~eI~s 109 (555)
+-+|||||+|.+. .++.++...+..++.. .+..+|++....+ ....+.+.+ ..+...+.+.++...
T Consensus 119 ~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~ 198 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEARE 198 (234)
T ss_dssp CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHH
T ss_pred cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHH
Confidence 4899999999998 3568899999988887 2334555554421 112223332 458999999999999
Q ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Q 008751 110 HLQMICAAEKVEL--QQHLLVQLIESCRADIRKT 141 (555)
Q Consensus 110 rL~~Ic~kEgl~I--d~~~L~~Li~~S~GDIRqa 141 (555)
.+......- ..+ ++..++.+...++|--+..
T Consensus 199 ~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 199 FLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp HHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHH
Confidence 999877665 655 9999999999999977653
No 139
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.52 Score=49.40 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=78.5
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCC----c----ccHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFF----P----EDRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf----~----eDrGf~sAL~~lie 71 (555)
..-++|++....+|-++.|.---+ -..+..-+ ..+.+.+|+|||||.+. + .||--++-|.+++.
T Consensus 205 l~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~elln 284 (408)
T KOG0727|consen 205 LAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLN 284 (408)
T ss_pred HHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHH
Confidence 445788888888888888872210 00000000 11357899999999873 2 37777788888877
Q ss_pred H-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCC
Q 008751 72 K-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE 121 (555)
Q Consensus 72 k-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~ 121 (555)
. +++.+|+.+|.....-|.++. + .+|.|..|...+=+-...+|+.+.++.
T Consensus 285 qmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 285 QMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred hccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 5 678899999987643344443 3 579999999888888888999887764
No 140
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=1.1 Score=51.61 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=78.1
Q ss_pred CchhHHHhhCCCceEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCCcccHHHHHHH-----HHHHH--
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPEDRGFIAGI-----QQIAE-- 71 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~rn-----~~v~gsl---~~~kkkLILiDEVD~Lf~eDrGf~sAL-----~~lie-- 71 (555)
....++|+|+|..+++++|-.-.+.. ..+..-| .+..+-+++|||+|.+...-.+.+..+ .+++.
T Consensus 238 ~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~m 317 (802)
T KOG0733|consen 238 SLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSM 317 (802)
T ss_pred HHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhh
Confidence 34579999999999999997744210 0000000 123567999999999987533344433 22222
Q ss_pred -H-----c-CCcEEEE--ecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH
Q 008751 72 -K-----A-KGPVILT--SNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADI 138 (555)
Q Consensus 72 -k-----S-KrPIILt--CND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDI 138 (555)
. + .-|++.| +|.+...=|.++. + ..|...-|+..+=...|+.||..-.+.- +-...+|+..+-|=+
T Consensus 318 D~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 318 DELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFV 396 (802)
T ss_pred hcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCcc
Confidence 1 1 1355444 4555433333443 3 5799999999999999999997654432 223556666554433
No 141
>PRK15115 response regulator GlrR; Provisional
Probab=91.15 E-value=2.2 Score=45.70 Aligned_cols=106 Identities=10% Similarity=0.174 Sum_probs=67.8
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCCC------CC-cCccce-eEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNNI------TL-PDSLDR-LEVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n~------~L-~~l~~~-l~I~Fkr 101 (555)
....++|||||.|... .+..|.++++.. .++||++++..-. .+ .+++.+ ..+.+.-
T Consensus 228 ~~gtl~l~~i~~l~~~---~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~l 304 (444)
T PRK15115 228 EGGTLFLDEIGDMPAP---LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 (444)
T ss_pred CCCEEEEEccccCCHH---HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecC
Confidence 4578999999999765 466777777653 3478888775310 11 111111 1333333
Q ss_pred CCH----HHH----HHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 102 PMP----KDL----LSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 102 Ps~----~eI----~srL~~Ic~kEgl---~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
|+. ++| ..+|...+...+. .+++++++.|..+. .||+|+.-|.++..+..
T Consensus 305 PpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred CChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 443 223 3444455554442 48999999999998 99999999999976653
No 142
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.11 E-value=0.21 Score=55.57 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHH-----cCCcEEEEecCCC---CCCcCccc-e----eEEEecCCCHHHHHHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEK-----AKGPVILTSNSNN---ITLPDSLD-R----LEVSFTMPMPKDLLSH 110 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liek-----SKrPIILtCND~n---~~L~~l~~-~----l~I~FkrPs~~eI~sr 110 (555)
.-|+++||.|.+-..++ .+|..+-+- +++=+|-++|... ..||++.. + ..+.|++-+..+|...
T Consensus 257 ~~llVlDEmD~L~tr~~---~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~I 333 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQ---TVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEI 333 (529)
T ss_pred eEEEEechhhHHhhccc---ceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHH
Confidence 34899999999975544 344444443 3444666788863 46666553 2 5789999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHH---HcCCcHHHHHHHHHH
Q 008751 111 LQMICAAEKVEL-QQHLLVQLIE---SCRADIRKTIMHLQF 147 (555)
Q Consensus 111 L~~Ic~kEgl~I-d~~~L~~Li~---~S~GDIRqaLN~LQf 147 (555)
|..=...+-..+ -+..|+.++. +.-||+|++|--++-
T Consensus 334 l~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 334 LQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred HHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 987666665544 3446665544 468999999988773
No 143
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=90.91 E-value=0.2 Score=42.72 Aligned_cols=75 Identities=9% Similarity=0.089 Sum_probs=44.8
Q ss_pred HHHhhC---CCceEEEeCCCcccccc----c-------ccccCCCCCCcEEEEeCCCCCCcc-cHHHHHHHHHHHH----
Q 008751 11 EAAQHA---DDEVVEVIHIPDDENSH----G-------VMGKSDNHVKPLILIEDVDVFFPE-DRGFIAGIQQIAE---- 71 (555)
Q Consensus 11 ~iAkel---Gy~VIELNASDdR~rn~----~-------v~gsl~~~kkkLILiDEVD~Lf~e-DrGf~sAL~~lie---- 71 (555)
.+++.+ ++.++.+++++...... . ........+..+|++||++.+... ..++...+..+..
T Consensus 38 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~ 117 (151)
T cd00009 38 AIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID 117 (151)
T ss_pred HHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceecc
Confidence 455565 89999999977443210 0 011112235689999999998443 2233334444332
Q ss_pred HcCCcEEEEecCCC
Q 008751 72 KAKGPVILTSNSNN 85 (555)
Q Consensus 72 kSKrPIILtCND~n 85 (555)
..+++||+++|...
T Consensus 118 ~~~~~ii~~~~~~~ 131 (151)
T cd00009 118 RENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEecCccc
Confidence 24678999999865
No 144
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.63 E-value=1.1 Score=52.48 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=84.4
Q ss_pred hhHHHhhCCCceEEEeCCCcccc---cccc-----------cccC----CCCCCcEEEEeCCCCCCcccHHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN---SHGV-----------MGKS----DNHVKPLILIEDVDVFFPEDRGFIAGIQQIA 70 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r---n~~v-----------~gsl----~~~kkkLILiDEVD~Lf~eDrGf~sAL~~li 70 (555)
...+|+.++..++.+|.++..+. .... .+.+ ....+++|+|||+|.+.. ..+.+|.+++
T Consensus 505 Ak~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---~v~~~LLq~l 581 (758)
T PRK11034 505 TVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---DVFNLLLQVM 581 (758)
T ss_pred HHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---HHHHHHHHHH
Confidence 35789999999999999874332 0000 0111 112467999999999964 4778888888
Q ss_pred HHc-------------CCcEEEEecCCC------------------------CCC-cCccce--eEEEecCCCHHHHHHH
Q 008751 71 EKA-------------KGPVILTSNSNN------------------------ITL-PDSLDR--LEVSFTMPMPKDLLSH 110 (555)
Q Consensus 71 ekS-------------KrPIILtCND~n------------------------~~L-~~l~~~--l~I~FkrPs~~eI~sr 110 (555)
+.. ++-||+|+|.-. ..+ |.++.+ ..|.|++.+..++...
T Consensus 582 d~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I 661 (758)
T PRK11034 582 DNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQV 661 (758)
T ss_pred hcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHH
Confidence 742 233888888320 011 233344 4789999999877665
Q ss_pred HHHHH-------HHcCC--CCCHHHHHHHHHHc------CCcHHHHHH
Q 008751 111 LQMIC-------AAEKV--ELQQHLLVQLIESC------RADIRKTIM 143 (555)
Q Consensus 111 L~~Ic-------~kEgl--~Id~~~L~~Li~~S------~GDIRqaLN 143 (555)
+.... ...|+ .+++.+++.|++.. .+.||++|.
T Consensus 662 ~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 662 VDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred HHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 54332 33455 56899999998753 456777763
No 145
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=1.6 Score=50.95 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=82.3
Q ss_pred hHHHhhCCCceEEEeCCCccc-------ccccccccCC----------CCCCcEEEEeCCCCCCcccHH-HHHHHHHHHH
Q 008751 10 CEAAQHADDEVVEVIHIPDDE-------NSHGVMGKSD----------NHVKPLILIEDVDVFFPEDRG-FIAGIQQIAE 71 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~-------rn~~v~gsl~----------~~kkkLILiDEVD~Lf~eDrG-f~sAL~~lie 71 (555)
--||+.+|-.++-+--.-.|. |.+++ |++. +.+..|+++||||-|..+-|| =.+||.+.+-
T Consensus 368 kSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYI-GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 368 KSIAKALGRKFVRISLGGVRDEAEIRGHRRTYI-GAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred HHHHHHhCCCEEEEecCccccHHHhcccccccc-ccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 368999999999988876442 12221 2221 245789999999999764222 2457766553
Q ss_pred -----------------HcCCcEEEEecCCCCCCcCccce-eEEEecCCCHHHH----HHHHH-HHHHHcC-----CCCC
Q 008751 72 -----------------KAKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDL----LSHLQ-MICAAEK-----VELQ 123 (555)
Q Consensus 72 -----------------kSKrPIILtCND~n~~L~~l~~~-l~I~FkrPs~~eI----~srL~-~Ic~kEg-----l~Id 123 (555)
-|++=||+|+|+.+.+-.+++++ ..|++.--+..|= +.||- .+.+..| +.++
T Consensus 447 PEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~ 526 (782)
T COG0466 447 PEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTIT 526 (782)
T ss_pred HhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeec
Confidence 16777999999998644456787 6788887776553 33333 3333334 4688
Q ss_pred HHHHHHHHHHc
Q 008751 124 QHLLVQLIESC 134 (555)
Q Consensus 124 ~~~L~~Li~~S 134 (555)
+++|..||.+.
T Consensus 527 d~ai~~iI~~Y 537 (782)
T COG0466 527 DEAIKDIIRYY 537 (782)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.88 E-value=1.6 Score=51.89 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=73.2
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-------------cCCcEEEEecCCCC---------C------------
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-------------AKGPVILTSNSNNI---------T------------ 87 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-------------SKrPIILtCND~n~---------~------------ 87 (555)
..+.+|||||+|-+ ++.++..|.+++.. .++-||||+|-... .
T Consensus 667 ~p~svvllDEieka---~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~ 743 (852)
T TIGR03345 667 KPYSVVLLDEVEKA---HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEAL 743 (852)
T ss_pred CCCcEEEEechhhc---CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHH
Confidence 35689999999976 44577888888874 34678888884210 0
Q ss_pred -------C-cCccce-eEEEecCCCHHHHHHHHHHHH--------HHcCC--CCCHHHHHHHHHHcCC---cHHHHHHHH
Q 008751 88 -------L-PDSLDR-LEVSFTMPMPKDLLSHLQMIC--------AAEKV--ELQQHLLVQLIESCRA---DIRKTIMHL 145 (555)
Q Consensus 88 -------L-~~l~~~-l~I~FkrPs~~eI~srL~~Ic--------~kEgl--~Id~~~L~~Li~~S~G---DIRqaLN~L 145 (555)
+ |.++++ ..|.|++.+..++...+..-. .+.|+ .+++++++.|++.+.+ +.|...+.+
T Consensus 744 ~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~I 823 (852)
T TIGR03345 744 RPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAIL 823 (852)
T ss_pred HHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHH
Confidence 1 112233 468899999988776665332 12254 6799999999998876 789988888
Q ss_pred HHHhh
Q 008751 146 QFWCQ 150 (555)
Q Consensus 146 Qf~s~ 150 (555)
|....
T Consensus 824 e~~i~ 828 (852)
T TIGR03345 824 NQTLL 828 (852)
T ss_pred HHHHH
Confidence 86443
No 147
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=1.1 Score=49.30 Aligned_cols=137 Identities=16% Similarity=0.122 Sum_probs=80.5
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc-----cHHHHHHHHHHHHH-
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE-----DRGFIAGIQQIAEK- 72 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e-----DrGf~sAL~~liek- 72 (555)
+..-++|++.+.+++.+..++-.++ .+.+...+ ....+.+|+|||+|.++.. +.+..+.+.+++..
T Consensus 291 ~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~ 370 (494)
T COG0464 291 LLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTEL 370 (494)
T ss_pred HHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHh
Confidence 3456899999999999999952221 11111111 1246789999999999763 11123455554442
Q ss_pred ----cCCc--EEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH----HcCCc
Q 008751 73 ----AKGP--VILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE-LQQHLLVQLIE----SCRAD 137 (555)
Q Consensus 73 ----SKrP--IILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~-Id~~~L~~Li~----~S~GD 137 (555)
.... +|-++|.+...-+.++. + ..|.|..|+..+-...++......+.. ..+-.++.+++ .++.|
T Consensus 371 d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgad 450 (494)
T COG0464 371 DGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGAD 450 (494)
T ss_pred cCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHH
Confidence 1223 56666666532222222 3 578999999888777777777655553 33455555655 34556
Q ss_pred HHHHHH
Q 008751 138 IRKTIM 143 (555)
Q Consensus 138 IRqaLN 143 (555)
|...+-
T Consensus 451 i~~i~~ 456 (494)
T COG0464 451 IAALVR 456 (494)
T ss_pred HHHHHH
Confidence 555543
No 148
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.84 E-value=2 Score=43.49 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=73.7
Q ss_pred hhHHHhhCCCceEEEeCCCcccccc-------------------------------cccccCCC--CCCcEEEEeCCCCC
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSH-------------------------------GVMGKSDN--HVKPLILIEDVDVF 55 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~-------------------------------~v~gsl~~--~kkkLILiDEVD~L 55 (555)
...+|+.+|..++.+|.+.+..... ...|.+.. ....++++||+|.+
T Consensus 38 A~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~ 117 (262)
T TIGR02640 38 AMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRS 117 (262)
T ss_pred HHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhC
Confidence 3577889999999999876332100 00111110 13469999999998
Q ss_pred CcccHHHHHHHHHHHHHc------------------CCcEEEEecCCC----CCCcC-ccce-eEEEecCCCHHHHHHHH
Q 008751 56 FPEDRGFIAGIQQIAEKA------------------KGPVILTSNSNN----ITLPD-SLDR-LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 56 f~eDrGf~sAL~~liekS------------------KrPIILtCND~n----~~L~~-l~~~-l~I~FkrPs~~eI~srL 111 (555)
..+ .+.+|..+++.. ...||+|+|... ..+++ ++++ ..+.+..|+.++....|
T Consensus 118 ~~~---~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il 194 (262)
T TIGR02640 118 KPE---TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAIL 194 (262)
T ss_pred CHH---HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHH
Confidence 654 677777777531 234899999652 12222 3344 67888889887766665
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc
Q 008751 112 QMICAAEKVELQQHLLVQLIESC 134 (555)
Q Consensus 112 ~~Ic~kEgl~Id~~~L~~Li~~S 134 (555)
..- ..+++..+++|+...
T Consensus 195 ~~~-----~~~~~~~~~~iv~~~ 212 (262)
T TIGR02640 195 RAK-----TDVAEDSAATIVRLV 212 (262)
T ss_pred HHh-----hCCCHHHHHHHHHHH
Confidence 542 356788888877653
No 149
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=89.75 E-value=1.6 Score=45.96 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=70.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCcccee-EEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDRL-EVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~l-~I~Fkr 101 (555)
....++|||||.|... .+..|.++++.. .++||+++|..- ..+ .+++.++ .+.+.-
T Consensus 93 ~gGtL~Ldei~~L~~~---~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~l 169 (329)
T TIGR02974 93 DGGTLFLDELATASLL---VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITL 169 (329)
T ss_pred CCCEEEeCChHhCCHH---HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCC
Confidence 4679999999999765 566777777653 246788876531 111 2233332 333444
Q ss_pred CCH----HHH----HHHHHHHHHHcC----CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q 008751 102 PMP----KDL----LSHLQMICAAEK----VELQQHLLVQLIESC-RADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 102 Ps~----~eI----~srL~~Ic~kEg----l~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s~ 152 (555)
|+. .+| ..+|...+.+.| ..+++++++.|..+. -|++|+.-|.++..+...
T Consensus 170 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 170 PPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 443 223 344555666655 358999999999987 999999999998766543
No 150
>PRK05907 hypothetical protein; Provisional
Probab=89.61 E-value=1.7 Score=45.78 Aligned_cols=113 Identities=9% Similarity=-0.037 Sum_probs=78.4
Q ss_pred ccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC--CcEE-EEec-CCCCCCcC-ccceeEE----EecCCCHH
Q 008751 35 VMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK--GPVI-LTSN-SNNITLPD-SLDRLEV----SFTMPMPK 105 (555)
Q Consensus 35 v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK--rPII-LtCN-D~n~~L~~-l~~~l~I----~FkrPs~~ 105 (555)
.+-++++ .+++|++...+.+.+. ...+|.+++++-. .=+| ++.+ ++.+.+.+ +.....+ .|.++...
T Consensus 62 etlPfFa-erRlV~v~~~~~~~~~---~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k~~~v~~~~e~~~l~e~ 137 (311)
T PRK05907 62 EHFGLFA-SQETIGIYQAEKMSSS---TQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSSALCLSLFGEWFADRDK 137 (311)
T ss_pred hcCCccc-CeEEEEEecccccccc---cHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhhcceeccccccCCCCHH
Confidence 3445555 5678888777655432 3567888887621 1133 4442 11111111 1123344 89999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 106 DLLSHLQMICAAEKVELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 106 eI~srL~~Ic~kEgl~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
++..++...++++|+.++++.++.+++.+ ++|+..+.+.|+-.+.-
T Consensus 138 ~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly 184 (311)
T PRK05907 138 RIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQ 184 (311)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 69999999999976654
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.59 E-value=0.71 Score=54.71 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=75.1
Q ss_pred CCcEEEEeCCCCCCcc--cHH---HHHHHHHHHHHcCCcEEEEecCC--CCCC---cCccce-eEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE--DRG---FIAGIQQIAEKAKGPVILTSNSN--NITL---PDSLDR-LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e--DrG---f~sAL~~liekSKrPIILtCND~--n~~L---~~l~~~-l~I~FkrPs~~eI~srL 111 (555)
.+.+++|||++.+... ..| .-..|...++.....+|.++|.. ++.+ +.+..+ ..|.+..|+..+....|
T Consensus 280 ~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL 359 (852)
T TIGR03345 280 QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRML 359 (852)
T ss_pred CCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHH
Confidence 4679999999999751 112 22347778888888888888763 2211 223333 58999999999999998
Q ss_pred HHHHHH----cCCCCCHHHHHHHHHHcCC------cHHHHHHHHHHHh
Q 008751 112 QMICAA----EKVELQQHLLVQLIESCRA------DIRKTIMHLQFWC 149 (555)
Q Consensus 112 ~~Ic~k----Egl~Id~~~L~~Li~~S~G------DIRqaLN~LQf~s 149 (555)
+.+... .++.++++.+..++..+++ =..++|-.|...+
T Consensus 360 ~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~ 407 (852)
T TIGR03345 360 RGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTAC 407 (852)
T ss_pred HHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHH
Confidence 777654 3689999999999987753 2357777776543
No 152
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.95 E-value=1.2 Score=52.08 Aligned_cols=142 Identities=20% Similarity=0.216 Sum_probs=88.0
Q ss_pred hHHHhhCCCceEEEeCCC-----cc-c-ccccccc---c------CCCCCCcEEEEeCCCCCCcccHH-HHHHHHHHHH-
Q 008751 10 CEAAQHADDEVVEVIHIP-----DD-E-NSHGVMG---K------SDNHVKPLILIEDVDVFFPEDRG-FIAGIQQIAE- 71 (555)
Q Consensus 10 ~~iAkelGy~VIELNASD-----dR-~-rn~~v~g---s------l~~~kkkLILiDEVD~Lf~eDrG-f~sAL~~lie- 71 (555)
..||+.+|..++-+.-.- ++ + |.+++.. . ..+..+.||||||||-+-.+-+| =.+||.+++.
T Consensus 456 kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDP 535 (906)
T KOG2004|consen 456 KSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDP 535 (906)
T ss_pred HHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcCh
Confidence 368889998888887643 11 1 1222211 0 02235689999999988664222 2567777764
Q ss_pred ----------------HcCCcEEEEecCCCCCCcCccce-eEEEecCCCHHHH----HHHHH-HHHH-----HcCCCCCH
Q 008751 72 ----------------KAKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDL----LSHLQ-MICA-----AEKVELQQ 124 (555)
Q Consensus 72 ----------------kSKrPIILtCND~n~~L~~l~~~-l~I~FkrPs~~eI----~srL~-~Ic~-----kEgl~Id~ 124 (555)
-||+=||||+|....+-++++++ ..|...--..++= ..||. ..+. -|.++|++
T Consensus 536 EQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~ 615 (906)
T KOG2004|consen 536 EQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISD 615 (906)
T ss_pred hhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccH
Confidence 16777999999998766667787 5677765555442 22333 2233 34568999
Q ss_pred HHHHHHHHHcC--CcHHHHHHHHHHHhhc
Q 008751 125 HLLVQLIESCR--ADIRKTIMHLQFWCQN 151 (555)
Q Consensus 125 ~~L~~Li~~S~--GDIRqaLN~LQf~s~s 151 (555)
+.+..||+... .-+|..=-+++.+|+.
T Consensus 616 ~al~~lI~~YcrEaGVRnLqk~iekI~Rk 644 (906)
T KOG2004|consen 616 DALLALIERYCREAGVRNLQKQIEKICRK 644 (906)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999988752 3355555555555553
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=88.93 E-value=0.7 Score=51.96 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=50.4
Q ss_pred CCcEEEEeCCCCCCcc-------c--HHHHHHHHHHHHH----cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHH
Q 008751 43 VKPLILIEDVDVFFPE-------D--RGFIAGIQQIAEK----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPK 105 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e-------D--rGf~sAL~~liek----SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~ 105 (555)
++.+|+|||+|.++.. | +-.+.++...+.. .++.||.++|.....=+.++. + ..|+|.+|+..
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e 368 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAE 368 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHH
Confidence 5679999999998752 1 1112233333321 345677777776543233433 3 57999999998
Q ss_pred HHHHHHHHHHHHcCCCCCHH
Q 008751 106 DLLSHLQMICAAEKVELQQH 125 (555)
Q Consensus 106 eI~srL~~Ic~kEgl~Id~~ 125 (555)
+....+..... ..+.++++
T Consensus 369 ~r~~Il~~~l~-~~l~l~~~ 387 (512)
T TIGR03689 369 AAADIFSKYLT-DSLPLDAD 387 (512)
T ss_pred HHHHHHHHHhh-ccCCchHH
Confidence 88888877654 35666433
No 154
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=88.85 E-value=0.92 Score=48.63 Aligned_cols=87 Identities=14% Similarity=0.183 Sum_probs=59.7
Q ss_pred cCchhHHHhhCCCceEEEeCCCcccc----c-ccccc---cCCCCCCcEEEEeCCCCCCc--------ccHHHHHHHHHH
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMG---KSDNHVKPLILIEDVDVFFP--------EDRGFIAGIQQI 69 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDdR~r----n-~~v~g---sl~~~kkkLILiDEVD~Lf~--------eDrGf~sAL~~l 69 (555)
++...++|..+|.+++-+-||.=.++ . ..... .-..+.+-+|+|||+|.+-. .||--+++|..+
T Consensus 180 Tlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeL 259 (388)
T KOG0651|consen 180 TLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMEL 259 (388)
T ss_pred hHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHH
Confidence 45667999999999999999872211 0 00000 00113457999999996632 378888888888
Q ss_pred HHH-------cCCcEEEEecCCCCCCcCcc
Q 008751 70 AEK-------AKGPVILTSNSNNITLPDSL 92 (555)
Q Consensus 70 iek-------SKrPIILtCND~n~~L~~l~ 92 (555)
+.. .++|+|+++|+++..-|+++
T Consensus 260 lnqmdgfd~l~rVk~ImatNrpdtLdpaLl 289 (388)
T KOG0651|consen 260 LNQMDGFDTLHRVKTIMATNRPDTLDPALL 289 (388)
T ss_pred HHhhccchhcccccEEEecCCccccchhhc
Confidence 875 58999999999975445544
No 155
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.57 E-value=1.3 Score=52.05 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=76.0
Q ss_pred CCcEEEEeCCCCCCcc------cHHHHHHHHHHHHHcCCcEEEEecCCC--CC--C-cCccce-eEEEecCCCHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE------DRGFIAGIQQIAEKAKGPVILTSNSNN--IT--L-PDSLDR-LEVSFTMPMPKDLLSH 110 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e------DrGf~sAL~~liekSKrPIILtCND~n--~~--L-~~l~~~-l~I~FkrPs~~eI~sr 110 (555)
.+.+++|||+|.+... +..+...|..++...+.++|.++|... +. + +.+..+ ..|.+..|+.++....
T Consensus 278 ~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~I 357 (758)
T PRK11034 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQI 357 (758)
T ss_pred CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHH
Confidence 4569999999988532 222444577788777878888877531 11 1 112223 4799999999999888
Q ss_pred HHHHH----HHcCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHhh
Q 008751 111 LQMIC----AAEKVELQQHLLVQLIESCRADIR------KTIMHLQFWCQ 150 (555)
Q Consensus 111 L~~Ic----~kEgl~Id~~~L~~Li~~S~GDIR------qaLN~LQf~s~ 150 (555)
|+.+. ...++.+++..+..+++.+.+=|. ++|..|.-.+.
T Consensus 358 L~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 358 INGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred HHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHH
Confidence 88765 345789999999998887665443 88988887664
No 156
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.32 E-value=0.72 Score=48.53 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=83.6
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc--------cccccccCCCCCCcEEEEeCCCCCCcccHHHH------HH-HHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN--------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFI------AG-IQQIAE 71 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r--------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~------sA-L~~lie 71 (555)
....++|++.+..++=++|..=++. .|-...--....+-+|+|||.|.+.= ||+++ +. +..++.
T Consensus 166 m~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaL-dRryQelRGDVsEiVNALLT 244 (368)
T COG1223 166 MMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIAL-DRRYQELRGDVSEIVNALLT 244 (368)
T ss_pred HHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh-hhhHHHhcccHHHHHHHHHH
Confidence 3456899999999999999874321 11000000122467999999997743 44433 22 222332
Q ss_pred H-----cCCcEEEEe--cCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCCcH
Q 008751 72 K-----AKGPVILTS--NSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----CRADI 138 (555)
Q Consensus 72 k-----SKrPIILtC--ND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~----S~GDI 138 (555)
. .+-=++.|| |.+...=+.++++ ..|.|+.|+.++....|+.-+++--+.++.. ++.++.. +++||
T Consensus 245 elDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdi 323 (368)
T COG1223 245 ELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDI 323 (368)
T ss_pred hccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhH
Confidence 1 233355444 5544322345565 6899999999999999999999887777655 6666665 56677
Q ss_pred HHHH
Q 008751 139 RKTI 142 (555)
Q Consensus 139 RqaL 142 (555)
-.-+
T Consensus 324 kekv 327 (368)
T COG1223 324 KEKV 327 (368)
T ss_pred HHHH
Confidence 5443
No 157
>PRK13695 putative NTPase; Provisional
Probab=87.81 E-value=1.9 Score=40.53 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=49.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCCC--CCc---CccceeEEEecCCCHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNI--TLP---DSLDRLEVSFTMPMPKDLLSHLQM 113 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n~--~L~---~l~~~l~I~FkrPs~~eI~srL~~ 113 (555)
+..+||+||+..+-..+.++..+|.+++ ....|+|++.++... ... ...++..+.+.+-+-+++..++..
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~ 170 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILN 170 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHH
Confidence 5789999998665444788899999999 567899999998531 112 222356677776666666665554
No 158
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=87.18 E-value=2.9 Score=45.74 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=42.5
Q ss_pred chhHHHhhCCCceEEEeCCCccc-----c--ccc-------ccccCCCCCCcEEEEeCCCCCCcc--------c---HHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDE-----N--SHG-------VMGKSDNHVKPLILIEDVDVFFPE--------D---RGF 62 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~-----r--n~~-------v~gsl~~~kkkLILiDEVD~Lf~e--------D---rGf 62 (555)
...++|+.++..++.++++.-.. . ... ..+.+....+.+|+|||||.+... | .|.
T Consensus 124 lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~v 203 (412)
T PRK05342 124 LAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGV 203 (412)
T ss_pred HHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHH
Confidence 34578899999999999975211 0 000 011111235689999999999753 1 267
Q ss_pred HHHHHHHHHH
Q 008751 63 IAGIQQIAEK 72 (555)
Q Consensus 63 ~sAL~~liek 72 (555)
+.+|.++++-
T Consensus 204 Q~~LL~~Leg 213 (412)
T PRK05342 204 QQALLKILEG 213 (412)
T ss_pred HHHHHHHHhc
Confidence 8999999974
No 159
>CHL00195 ycf46 Ycf46; Provisional
Probab=86.85 E-value=4.6 Score=45.25 Aligned_cols=98 Identities=17% Similarity=0.417 Sum_probs=74.3
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCCCCCCcCccc--eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~n~~L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
+.++|+.|.+-..+ |....+.|+.++.. ...-||+++... .+|.-+. ...+.|..|+..|+...|..++...
T Consensus 82 ~~~~vl~d~h~~~~-~~~~~r~l~~l~~~~~~~~~~~i~~~~~~--~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~ 158 (489)
T CHL00195 82 PALFLLKDFNRFLN-DISISRKLRNLSRILKTQPKTIIIIASEL--NIPKELKDLITVLEFPLPTESEIKKELTRLIKSL 158 (489)
T ss_pred CcEEEEecchhhhc-chHHHHHHHHHHHHHHhCCCEEEEEcCCC--CCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhc
Confidence 56999999998884 55666777666553 333466666543 3565454 3578999999999999999999888
Q ss_pred CCCCCHHHHHHHHHHcCC----cHHHHHHH
Q 008751 119 KVELQQHLLVQLIESCRA----DIRKTIMH 144 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~G----DIRqaLN~ 144 (555)
++.+++..++.+++.+.| |+|+++..
T Consensus 159 ~~~~~~~~~~~l~~~~~gls~~~~~~~~~~ 188 (489)
T CHL00195 159 NIKIDSELLENLTRACQGLSLERIRRVLSK 188 (489)
T ss_pred CCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999998655 66776654
No 160
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=86.81 E-value=1.3 Score=46.54 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=68.8
Q ss_pred cCchhHHHhhCCCceEEEeCCCc----cc------ccccccccCCCCCCcEEEEeCCCCCCc--------ccHHHHHHHH
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPD----DE------NSHGVMGKSDNHVKPLILIEDVDVFFP--------EDRGFIAGIQ 67 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDd----R~------rn~~v~gsl~~~kkkLILiDEVD~Lf~--------eDrGf~sAL~ 67 (555)
.+...++|.+....+|-+..|.- ++ |.-+++. .-+.+++|+|||+|.+-. +|.--++++.
T Consensus 195 tLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma--rehapsiifmdeidsigs~r~e~~~ggdsevqrtml 272 (404)
T KOG0728|consen 195 TLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA--REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTML 272 (404)
T ss_pred hHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH--HhcCCceEeeecccccccccccCCCCccHHHHHHHH
Confidence 46677888888888998888771 11 1123333 224689999999998842 2555666777
Q ss_pred HHHHH-------cCCcEEEEecCCCCCCcCccc----eeEEEecCCCHHHHHHHHH
Q 008751 68 QIAEK-------AKGPVILTSNSNNITLPDSLD----RLEVSFTMPMPKDLLSHLQ 112 (555)
Q Consensus 68 ~liek-------SKrPIILtCND~n~~L~~l~~----~l~I~FkrPs~~eI~srL~ 112 (555)
.+++. .++.+|+.+|...-.-|.++. -..|.|.+|+.+.=...|.
T Consensus 273 ellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 273 ELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred HHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 77664 357899999987632233332 2689999888755444443
No 161
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=86.11 E-value=4.5 Score=43.34 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCccce-eEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDR-LEVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~-l~I~Fkr 101 (555)
....++|||||.|... .+..|.++++.. .++||++++..- ..+ ++++.+ ..+.+.-
T Consensus 233 ~~gtl~l~~i~~l~~~---~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~l 309 (445)
T TIGR02915 233 HGGTLFLDEIGDLPLN---LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITI 309 (445)
T ss_pred CCCEEEEechhhCCHH---HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecC
Confidence 4578999999999764 567777777652 347888887641 111 112222 1233333
Q ss_pred CCH----HH----HHHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 102 PMP----KD----LLSHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 102 Ps~----~e----I~srL~~Ic~kEg---l~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
|+. ++ +..+|..++.+.| ..++++.+..|..+. .|++|+.-|.++..+..
T Consensus 310 PpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 310 PPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred CCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 332 12 2345556666555 468999999998876 89999999999876653
No 162
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=85.66 E-value=4.7 Score=42.88 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCCC------CCc-Cccce-eEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNNI------TLP-DSLDR-LEVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n~------~L~-~l~~~-l~I~Fkr 101 (555)
....++|||||.|... .+..|.++++.. .++||++++..-. .+. .++.+ ..+.+.-
T Consensus 233 ~~gtl~ldei~~l~~~---~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ 309 (441)
T PRK10365 233 DGGTLFLDEIGDISPM---MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEV 309 (441)
T ss_pred CCCEEEEeccccCCHH---HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecC
Confidence 4568999999999875 456677777653 2357777755310 011 11112 2344444
Q ss_pred CCHH----H----HHHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 102 PMPK----D----LLSHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 102 Ps~~----e----I~srL~~Ic~kEg---l~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
|+.. + +..+|..++...+ ..++++.++.|..+. .||+|+..|.++.....
T Consensus 310 ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 310 PSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred CChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 4432 2 3344555555444 358999999999987 89999999999976543
No 163
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=85.38 E-value=6.4 Score=41.41 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=76.2
Q ss_pred cccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCc----EEEEe-cCCCCC--CcCccc----eeEEEecCC
Q 008751 34 GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGP----VILTS-NSNNIT--LPDSLD----RLEVSFTMP 102 (555)
Q Consensus 34 ~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrP----IILtC-ND~n~~--L~~l~~----~l~I~FkrP 102 (555)
....++|+ .++++.+...+.....+. ..++.... ...| ++++. +..... +.+.+. +..+.+.++
T Consensus 66 ~~s~~lF~-~~~~v~l~~~~~~~~~~~--~~~l~~~~--~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~ 140 (334)
T COG1466 66 LESPSLFG-EKRLVVLKNAEKKPNKDK--NLALLELA--ALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPL 140 (334)
T ss_pred hhcccccc-CCeeEEEECCCCCcCchh--HHHHHHHH--cCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCC
Confidence 34556676 448999999988763222 11222222 2233 33333 333321 111221 236889999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 103 MPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 103 s~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
..+++..++...++..|+++++++++.|+...+||++.+-+.++-.+.-
T Consensus 141 ~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~ 189 (334)
T COG1466 141 DEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALY 189 (334)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998888777755543
No 164
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=2.3 Score=49.24 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=83.3
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc---------cccccccCCCCC-CcEEEEeCCCCCCcc-------cHHHHHHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN---------SHGVMGKSDNHV-KPLILIEDVDVFFPE-------DRGFIAGIQQI 69 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r---------n~~v~gsl~~~k-kkLILiDEVD~Lf~e-------DrGf~sAL~~l 69 (555)
....++|++.|..++.+|+..-..+ ..++... .+.+ +.+|++||+|.+... ++--.+++.++
T Consensus 233 ~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a-~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL 311 (693)
T KOG0730|consen 233 FLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA-LKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTL 311 (693)
T ss_pred HHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH-hccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHH
Confidence 3455899999999999999873321 0111111 1223 789999999999751 23355667777
Q ss_pred HHHcC----CcEEEEecCCCCCCcCccc-e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 008751 70 AEKAK----GPVILTSNSNNITLPDSLD-R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA 136 (555)
Q Consensus 70 iekSK----rPIILtCND~n~~L~~l~~-~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G 136 (555)
+.-.+ .=+|-++|.++..-+.++. + ..+...-|+...=...|+.++++.+.. ++..+..++..+.|
T Consensus 312 ~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thG 384 (693)
T KOG0730|consen 312 LDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHG 384 (693)
T ss_pred HhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccc
Confidence 76533 2233334444443333442 3 567888899888888889889887777 66778888776655
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.92 E-value=3.1 Score=49.10 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=82.4
Q ss_pred hhHHHhhC---CCceEEEeCCCcccc---ccc---cccc--------C----CCCCCcEEEEeCCCCCCcccHHHHHHHH
Q 008751 9 LCEAAQHA---DDEVVEVIHIPDDEN---SHG---VMGK--------S----DNHVKPLILIEDVDVFFPEDRGFIAGIQ 67 (555)
Q Consensus 9 ~~~iAkel---Gy~VIELNASDdR~r---n~~---v~gs--------l----~~~kkkLILiDEVD~Lf~eDrGf~sAL~ 67 (555)
..++|+.+ +..++.++.|+-.+. ... ..|. + ....++||||||||.+. ..++.+|.
T Consensus 556 A~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~---~~v~~~Ll 632 (821)
T CHL00095 556 TKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH---PDIFNLLL 632 (821)
T ss_pred HHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC---HHHHHHHH
Confidence 45677766 467899998873321 000 0010 1 11345899999999885 45788999
Q ss_pred HHHHHc-------------CCcEEEEecCCCCC-------C------------------------------cCccce--e
Q 008751 68 QIAEKA-------------KGPVILTSNSNNIT-------L------------------------------PDSLDR--L 95 (555)
Q Consensus 68 ~liekS-------------KrPIILtCND~n~~-------L------------------------------~~l~~~--l 95 (555)
++++.. ++=||||+|--... + |.++++ .
T Consensus 633 q~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ 712 (821)
T CHL00095 633 QILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDE 712 (821)
T ss_pred HHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCe
Confidence 998852 34488888753110 0 112333 4
Q ss_pred EEEecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHHc------CCcHHHHH
Q 008751 96 EVSFTMPMPKDLLSHLQMICA-------AEK--VELQQHLLVQLIESC------RADIRKTI 142 (555)
Q Consensus 96 ~I~FkrPs~~eI~srL~~Ic~-------kEg--l~Id~~~L~~Li~~S------~GDIRqaL 142 (555)
.|.|++.+.+++...+..... ..| +.+++++++.|++.. .+.||++|
T Consensus 713 ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i 774 (821)
T CHL00095 713 IIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAI 774 (821)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHH
Confidence 689999999888776654432 223 467899999999863 35667766
No 166
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.03 E-value=1.1 Score=48.51 Aligned_cols=131 Identities=17% Similarity=0.228 Sum_probs=81.2
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc----cHHHHHHH-HHHHHH---
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE----DRGFIAGI-QQIAEK--- 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e----DrGf~sAL-~~liek--- 72 (555)
.-++|++.|.+++=+--|.=.++ .+.++.-| .+-++.+|+|||||.+... |+-..+.+ .+||..
T Consensus 144 AKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDG 223 (386)
T KOG0737|consen 144 AKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDG 223 (386)
T ss_pred HHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcc
Confidence 34789999999988877763322 11221111 2346899999999998753 54444433 334442
Q ss_pred -----cCCcEEEEecCCCCCCcC-ccc--eeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH-cCCcHH
Q 008751 73 -----AKGPVILTSNSNNITLPD-SLD--RLEVSFTMPMPKDLLSHLQMICAAEKVE--LQQHLLVQLIES-CRADIR 139 (555)
Q Consensus 73 -----SKrPIILtCND~n~~L~~-l~~--~l~I~FkrPs~~eI~srL~~Ic~kEgl~--Id~~~L~~Li~~-S~GDIR 139 (555)
..+=+|+.+++.-..+-. ++. +..+...-|...+=...|..|.+.|++. ++-..+.+..++ ++.||+
T Consensus 224 l~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLk 301 (386)
T KOG0737|consen 224 LSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLK 301 (386)
T ss_pred ccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHH
Confidence 224456666554322222 222 3567778899999999999999999995 444445555443 466776
No 167
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=84.01 E-value=0.4 Score=41.83 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=32.8
Q ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecC
Q 008751 45 PLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (555)
Q Consensus 45 kLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND 83 (555)
.+|||||+|.++ ++.+...|..+++..+++||++.++
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 599999999985 4778889999988889999999987
No 168
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=83.83 E-value=8.7 Score=42.78 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCcccee-EEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDRL-EVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~l-~I~Fkr 101 (555)
....++|||||.|... .+..|.++++.. .++||+++|..- ..+ .+++.++ .+.+.-
T Consensus 281 ~gGtL~ldeI~~L~~~---~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~l 357 (509)
T PRK05022 281 DGGTLFLDEIGELPLA---LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSV 357 (509)
T ss_pred CCCEEEecChhhCCHH---HHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeC
Confidence 4568999999999764 567777777642 347999987641 111 1122221 333444
Q ss_pred CCH----HHH----HHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 102 PMP----KDL----LSHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 102 Ps~----~eI----~srL~~Ic~kEg---l~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
|+. .+| ..+|..++.+.| +.++++.++.|..+. -|++|+.-|.++..+..
T Consensus 358 PpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 358 PPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALL 419 (509)
T ss_pred CCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 442 222 345556666544 578999999998875 79999999999876654
No 169
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.60 E-value=1.9 Score=49.85 Aligned_cols=145 Identities=18% Similarity=0.193 Sum_probs=85.2
Q ss_pred cCchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCc--ccHH---HHHHHHHHHHH
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFP--EDRG---FIAGIQQIAEK 72 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~--eDrG---f~sAL~~liek 72 (555)
+|..-++|+|.|.|+|-+-.-.=-.+ ..++..-| -...+-+|+|||+|.|.. +|.| .-+-+.+++-.
T Consensus 559 TLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtE 638 (802)
T KOG0733|consen 559 TLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTE 638 (802)
T ss_pred HHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHH
Confidence 35567899999999998765441000 01111111 123578999999999965 2333 22234454432
Q ss_pred -------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHH------Hc
Q 008751 73 -------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIE------SC 134 (555)
Q Consensus 73 -------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~-L~~Li~------~S 134 (555)
..+=||-.+|.+..+=|.++. + ..+....|+..+=...|..+.+.-+..+++++ ++.|+. ++
T Consensus 639 lDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gft 718 (802)
T KOG0733|consen 639 LDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFT 718 (802)
T ss_pred hcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCc
Confidence 233455666666543333332 3 46788889999999999999987666555433 444443 35
Q ss_pred CCcHHHHHHHHHHHhh
Q 008751 135 RADIRKTIMHLQFWCQ 150 (555)
Q Consensus 135 ~GDIRqaLN~LQf~s~ 150 (555)
+.|+-..+..-.+.+.
T Consensus 719 GADLaaLvreAsi~AL 734 (802)
T KOG0733|consen 719 GADLAALVREASILAL 734 (802)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5677655544444443
No 170
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.54 E-value=7.5 Score=46.20 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCCCC----------------------
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNNIT---------------------- 87 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n~~---------------------- 87 (555)
...+|||||||.+.. ..+..|.++++.. ++-||+|+|--...
T Consensus 667 p~~vlllDeieka~~---~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (852)
T TIGR03346 667 PYSVVLFDEVEKAHP---DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLR 743 (852)
T ss_pred CCcEEEEeccccCCH---HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHH
Confidence 457999999998854 4788888888653 23388888873210
Q ss_pred ---CcCccce--eEEEecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHHc---CCcHHHHHHHHHHH
Q 008751 88 ---LPDSLDR--LEVSFTMPMPKDLLSHLQMICA-------AEK--VELQQHLLVQLIESC---RADIRKTIMHLQFW 148 (555)
Q Consensus 88 ---L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~-------kEg--l~Id~~~L~~Li~~S---~GDIRqaLN~LQf~ 148 (555)
.|.++.+ ..+.|.+++.+++...+..... ..| +.+++++++.|++.. .+..|..-+.++-.
T Consensus 744 ~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 821 (852)
T TIGR03346 744 AHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQRE 821 (852)
T ss_pred hhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHH
Confidence 0223334 4788999998777665554432 222 578999999999873 35566555555543
No 171
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=82.87 E-value=6.3 Score=43.94 Aligned_cols=106 Identities=10% Similarity=0.149 Sum_probs=68.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCccce---eEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDR---LEVSF 99 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~---l~I~F 99 (555)
....++|||||.|... .+..|.++++.. .++||++++..- ..+ .+++.+ ..|.+
T Consensus 290 ~~GtL~ldei~~L~~~---~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~l 366 (534)
T TIGR01817 290 DGGTLFLDEIGEISPA---FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFL 366 (534)
T ss_pred CCCeEEEechhhCCHH---HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeC
Confidence 4578999999999765 567777777653 257888876531 111 112222 23443
Q ss_pred cCCC--HHHH----HHHHHHHHHHcC--CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 100 TMPM--PKDL----LSHLQMICAAEK--VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 100 krPs--~~eI----~srL~~Ic~kEg--l~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
.+.. .++| ..+|...+.+.| +.++++.++.|..+. .|++|+.-|.++.....
T Consensus 367 PpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 367 PPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred CCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 3222 1233 344555555444 578999999999985 99999999999876553
No 172
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=82.81 E-value=7 Score=41.06 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCcccee-EEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDRL-EVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~l-~I~Fkr 101 (555)
....++|||||.|... .+..|.++++.. .++||++++..- ..+ .+++.++ .+.+.-
T Consensus 100 ~gGtL~l~~i~~L~~~---~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~l 176 (326)
T PRK11608 100 DGGTLFLDELATAPML---VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQL 176 (326)
T ss_pred CCCeEEeCChhhCCHH---HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEEC
Confidence 4578999999999765 567777777653 356888776531 112 2233332 233333
Q ss_pred CCH----HH----HHHHHHHHHHHcCC----CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 102 PMP----KD----LLSHLQMICAAEKV----ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 102 Ps~----~e----I~srL~~Ic~kEgl----~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
|+. .+ +..+|...+.+.|. .++++.+..|..+. -|++|+--|.++..+..
T Consensus 177 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 177 PPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 432 12 23456666766553 47999999998885 89999999999876653
No 173
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=82.29 E-value=6.7 Score=44.33 Aligned_cols=105 Identities=11% Similarity=0.111 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC-------------CcEEEEecCCCC------CCc-Ccccee-EEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK-------------GPVILTSNSNNI------TLP-DSLDRL-EVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK-------------rPIILtCND~n~------~L~-~l~~~l-~I~Fkr 101 (555)
....|+|||||-|... .+..|.++++... ++||+++|..-. .+. +++.++ .+.+.-
T Consensus 307 ~gGTLfLdeI~~Lp~~---~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~l 383 (526)
T TIGR02329 307 HRGTLFLDEIGEMPLP---LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIAL 383 (526)
T ss_pred CCceEEecChHhCCHH---HHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeC
Confidence 3468999999999765 5677777776432 368888876421 111 122222 234444
Q ss_pred CCH----HH----HHHHHHHHHHHcCCCCCHHHHHH-------HHHH-cCCcHHHHHHHHHHHhh
Q 008751 102 PMP----KD----LLSHLQMICAAEKVELQQHLLVQ-------LIES-CRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 102 Ps~----~e----I~srL~~Ic~kEgl~Id~~~L~~-------Li~~-S~GDIRqaLN~LQf~s~ 150 (555)
|+. .+ +..+|...+...++.++++.+.. |..+ --|++|+--|.++-.+.
T Consensus 384 PPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i 448 (526)
T TIGR02329 384 PPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLAL 448 (526)
T ss_pred CCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 443 22 34556666666678899999887 6665 48999999999987665
No 174
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=81.77 E-value=7.9 Score=44.10 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=67.8
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCccce-eEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDR-LEVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~-l~I~Fkr 101 (555)
....|+|||||-|... .+..|.++++.. .++||+++|..- ..+ ++++.+ ..+.+.-
T Consensus 416 ~~GtL~ldei~~l~~~---~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~l 492 (638)
T PRK11388 416 HGGTLFLEKVEYLSPE---LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 (638)
T ss_pred CCCEEEEcChhhCCHH---HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeC
Confidence 4578999999999765 566777777642 345888877631 111 112222 1333333
Q ss_pred CCH----HH----HHHHHHHHHHHcC--CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 102 PMP----KD----LLSHLQMICAAEK--VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 102 Ps~----~e----I~srL~~Ic~kEg--l~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
|+. .+ +..+|..++.+-| +.++++.++.|..+. -|++|+.-|.++..+..
T Consensus 493 PpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 493 PPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 432 22 3344555554433 568999999999987 89999999999976653
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=81.76 E-value=7.1 Score=46.56 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=64.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCCC-----------------------
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNNI----------------------- 86 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n~----------------------- 86 (555)
.+++|||||+|.+.. ..+..|.++++.. ++-||+|+|-...
T Consensus 670 p~~vLllDEieka~~---~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (857)
T PRK10865 670 PYSVILLDEVEKAHP---DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVS 746 (857)
T ss_pred CCCeEEEeehhhCCH---HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHc
Confidence 457999999998864 4678888888753 2238888886311
Q ss_pred --CCcCccce--eEEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHcC----C--cHHHHHH
Q 008751 87 --TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAA-------EK--VELQQHLLVQLIESCR----A--DIRKTIM 143 (555)
Q Consensus 87 --~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~k-------Eg--l~Id~~~L~~Li~~S~----G--DIRqaLN 143 (555)
..|.++.+ ..+.|.+++...+...+...... .| +.+++++++.|+...- | .||++|.
T Consensus 747 ~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~ 822 (857)
T PRK10865 747 HNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQ 822 (857)
T ss_pred ccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHH
Confidence 11223343 47889999988876655544322 24 4579999999998531 2 5666663
No 176
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=80.73 E-value=19 Score=38.55 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=67.8
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC-------CCCcCccce-eEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n-------~~L~~l~~~-l~I~Fkr 101 (555)
....|+|||||.|... .+..|.++++.. .++||+++|..- ..-+.++.+ ..+.+.-
T Consensus 237 ~~gtl~ld~i~~l~~~---~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ 313 (457)
T PRK11361 237 NEGTLLLDEIGEMPLV---LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLIL 313 (457)
T ss_pred CCCEEEEechhhCCHH---HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecC
Confidence 4579999999999764 567788877653 247888887531 111122222 1233333
Q ss_pred CCHH----H----HHHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 102 PMPK----D----LLSHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 102 Ps~~----e----I~srL~~Ic~kEg---l~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
|+.. + +..+|..++...| ..++++.++.|..+. -|++|+.-|.++..+..
T Consensus 314 ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 314 PPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 3321 2 2345556555444 358999999998876 89999999999876553
No 177
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=79.58 E-value=12 Score=43.11 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCCc-Cccce-eEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITLP-DSLDR-LEVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L~-~l~~~-l~I~Fkr 101 (555)
....++|||||.|... .+..|.++++.. .++||++++..- ..+. +++.+ ..+.+.-
T Consensus 470 ~~GtL~Ldei~~L~~~---~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~l 546 (686)
T PRK15429 470 DKSSLFLDEVGDMPLE---LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 546 (686)
T ss_pred CCCeEEEechhhCCHH---HHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeC
Confidence 3578999999999765 567777777652 346888887641 1111 12222 1233444
Q ss_pred CCH----HH----HHHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 102 PMP----KD----LLSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 102 Ps~----~e----I~srL~~Ic~kEgl---~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
|+. ++ +..+|..++.+.|. .++++.++.|..+. -|++|+.-|.++.....
T Consensus 547 PpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 547 PPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred CChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 443 22 34556666766554 47899999998874 89999999999876653
No 178
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=78.66 E-value=13 Score=41.69 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC-------CCCcCccce-eEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n-------~~L~~l~~~-l~I~Fkr 101 (555)
....++|||||-|... .+..|.++++.. .++||++++..- ....+++.+ ..+.+.-
T Consensus 298 ~~GtL~LdeI~~L~~~---~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~l 374 (520)
T PRK10820 298 NGGSVLLDEIGEMSPR---MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNL 374 (520)
T ss_pred CCCEEEEeChhhCCHH---HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeC
Confidence 3578999999999875 456777777652 235777766531 111223333 2334444
Q ss_pred CCH----HHH----HHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCcHHHHHHHHHHHhh
Q 008751 102 PMP----KDL----LSHLQMICAAEKV---ELQQHLLVQLIES-CRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 102 Ps~----~eI----~srL~~Ic~kEgl---~Id~~~L~~Li~~-S~GDIRqaLN~LQf~s~ 150 (555)
|+. .+| ..+|...|.+-|. .+++++++.|..+ --|++|+.-|.++....
T Consensus 375 PpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 375 PPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred CCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 443 122 3446666776664 6899999999988 69999999999886554
No 179
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=78.43 E-value=6.8 Score=45.91 Aligned_cols=109 Identities=13% Similarity=0.182 Sum_probs=68.5
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHH-----HcCCcEEEEecCCCC---CCc-Cccce---eEEEecCCCHHHHHH
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAE-----KAKGPVILTSNSNNI---TLP-DSLDR---LEVSFTMPMPKDLLS 109 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~lie-----kSKrPIILtCND~n~---~L~-~l~~~---l~I~FkrPs~~eI~s 109 (555)
.+..+|||||.|.|-.-- +.-|..|.. .+|.=||.++|.... .++ ++-++ ..|.|.+.+..++..
T Consensus 507 ~~~~VvLiDElD~Lvtr~---QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~ 583 (767)
T KOG1514|consen 507 RSTTVVLIDELDILVTRS---QDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQE 583 (767)
T ss_pred CCCEEEEeccHHHHhccc---HHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHH
Confidence 356799999999986521 234444443 356668888898763 222 11122 478999999887765
Q ss_pred HHHHHHHHcCC-CCCHHHHHHH---HHHcCCcHHHHHHHHHHHhhcCCCC
Q 008751 110 HLQMICAAEKV-ELQQHLLVQL---IESCRADIRKTIMHLQFWCQNKGYG 155 (555)
Q Consensus 110 rL~~Ic~kEgl-~Id~~~L~~L---i~~S~GDIRqaLN~LQf~s~s~~~~ 155 (555)
.+..=. .|+ .+.+++++-+ +....||.|+|+.-+.......+..
T Consensus 584 Ii~~RL--~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~ 631 (767)
T KOG1514|consen 584 IISARL--KGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEER 631 (767)
T ss_pred HHHHhh--cchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhh
Confidence 544322 222 2345555444 3456899999999998877765543
No 180
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=77.90 E-value=4.4 Score=48.07 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=73.6
Q ss_pred CCcEEEEeCCCCCCcc--cHH---HHHHHHHHHHHcCCcEEEEecCCC--C--CC-cCccce-eEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE--DRG---FIAGIQQIAEKAKGPVILTSNSNN--I--TL-PDSLDR-LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e--DrG---f~sAL~~liekSKrPIILtCND~n--~--~L-~~l~~~-l~I~FkrPs~~eI~srL 111 (555)
++.+|+|||+|.+... ..| ....|..++.....++|.++|... . .+ +.+..+ ..|.+..|+.++....|
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL 345 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISIL 345 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHH
Confidence 4679999999988741 122 334566666667777887777642 1 01 112233 46889999999988888
Q ss_pred HHHHHH----cCCCCCHHHHHHHHHHcC---Cc---HHHHHHHHHHHhhc
Q 008751 112 QMICAA----EKVELQQHLLVQLIESCR---AD---IRKTIMHLQFWCQN 151 (555)
Q Consensus 112 ~~Ic~k----Egl~Id~~~L~~Li~~S~---GD---IRqaLN~LQf~s~s 151 (555)
+.+..+ .++.+.+..+..++..+. .| -.+||..|...+..
T Consensus 346 ~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 346 RGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred HHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHH
Confidence 876543 467889999988887654 34 56899888876653
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=76.92 E-value=7.7 Score=32.32 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=27.1
Q ss_pred CcEEEEeCCCCCCcccHHHHH-------HHHHHHHHcCCcEEEEecC
Q 008751 44 KPLILIEDVDVFFPEDRGFIA-------GIQQIAEKAKGPVILTSNS 83 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~s-------AL~~liekSKrPIILtCND 83 (555)
..+||+||++.+......... .........+..+|+++|.
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 489999999999875322211 1233444567789999995
No 182
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=72.59 E-value=17 Score=39.19 Aligned_cols=105 Identities=9% Similarity=0.113 Sum_probs=68.1
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCCc-Cccce---eEEEec
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITLP-DSLDR---LEVSFT 100 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L~-~l~~~---l~I~Fk 100 (555)
...++|||||.|..+ .+..|.++++.. .++||++++..- ..+. .++.+ ..|+..
T Consensus 229 ~gtl~l~ei~~l~~~---~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lP 305 (463)
T TIGR01818 229 GGTLFLDEIGDMPLD---AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLP 305 (463)
T ss_pred CCeEEEEchhhCCHH---HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCC
Confidence 567999999999775 467777777643 346888887541 1111 23332 233333
Q ss_pred CCC--HHHH----HHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 101 MPM--PKDL----LSHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 101 rPs--~~eI----~srL~~Ic~kEg---l~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
+.. ..+| ..+|..++..-| ..++++.+..|..+. -|++|+.-|.++..+..
T Consensus 306 pLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 306 PLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 322 2333 344555565545 468999999999886 89999999999876654
No 183
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=72.56 E-value=10 Score=38.54 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=48.3
Q ss_pred CCcEEEEeCCCCCCcc-cHHHHHHHHHHHHHcCCcEEEEecCCC--CCCcC-------------ccc---eeEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNSNN--ITLPD-------------SLD---RLEVSFTMPM 103 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e-DrGf~sAL~~liekSKrPIILtCND~n--~~L~~-------------l~~---~l~I~FkrPs 103 (555)
++-+|+|||.|.+..+ -...+.++..++...++-+|+.++... ..+.. -++ +..+..+.|.
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~ 251 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPS 251 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCC
Confidence 5668999999999765 455677777777777777888887541 11111 111 2456667777
Q ss_pred HHHHHHHHHHHH
Q 008751 104 PKDLLSHLQMIC 115 (555)
Q Consensus 104 ~~eI~srL~~Ic 115 (555)
..++..++....
T Consensus 252 ~~~~~~~~~~~~ 263 (325)
T PF07693_consen 252 PSDLERYLNELL 263 (325)
T ss_pred HHHHHHHHHHHH
Confidence 778888887773
No 184
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=70.97 E-value=23 Score=40.37 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCCC------CC-cCccce-eEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNNI------TL-PDSLDR-LEVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n~------~L-~~l~~~-l~I~Fkr 101 (555)
....|+|||||-|... .+..|.++++.. .++||+++|..-. .+ .+++.+ ..+.+.-
T Consensus 322 ~gGTLfLdeI~~Lp~~---~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~l 398 (538)
T PRK15424 322 HGGTLFLDEIGEMPLP---LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQL 398 (538)
T ss_pred CCCEEEEcChHhCCHH---HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecC
Confidence 3468999999999765 567777777652 2368888765411 11 122222 2344444
Q ss_pred CCH----HHH----HHHHHHHHHHcCCCCCHHHH-------HHHHHH-cCCcHHHHHHHHHHHhh
Q 008751 102 PMP----KDL----LSHLQMICAAEKVELQQHLL-------VQLIES-CRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 102 Ps~----~eI----~srL~~Ic~kEgl~Id~~~L-------~~Li~~-S~GDIRqaLN~LQf~s~ 150 (555)
|+. ++| ..+|...+...+..++++.+ +.|..+ --|++|+.-|.++-.+.
T Consensus 399 PPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 399 PPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 443 233 34455555567788888776 344444 47999999999997665
No 185
>CHL00095 clpC Clp protease ATP binding subunit
Probab=70.88 E-value=12 Score=44.30 Aligned_cols=135 Identities=12% Similarity=0.069 Sum_probs=84.6
Q ss_pred CCceEEEeCCCcc------c----ccccccccCCCCCCcEEEEeCCCCCCcc-c-HH---HHHHHHHHHHHcCCcEEEEe
Q 008751 17 DDEVVEVIHIPDD------E----NSHGVMGKSDNHVKPLILIEDVDVFFPE-D-RG---FIAGIQQIAEKAKGPVILTS 81 (555)
Q Consensus 17 Gy~VIELNASDdR------~----rn~~v~gsl~~~kkkLILiDEVD~Lf~e-D-rG---f~sAL~~liekSKrPIILtC 81 (555)
|..++++|+++-. + +-..+.......++.+++|||+|.++.. . .| ...-|...+...+..+|.++
T Consensus 235 ~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaT 314 (821)
T CHL00095 235 DKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGAT 314 (821)
T ss_pred CCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeC
Confidence 6889999986521 1 1000111111224569999999988752 1 11 22345556666677788888
Q ss_pred cCCC--CC--C-cCccce-eEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC---c---HHHHHHHH
Q 008751 82 NSNN--IT--L-PDSLDR-LEVSFTMPMPKDLLSHLQMICA----AEKVELQQHLLVQLIESCRA---D---IRKTIMHL 145 (555)
Q Consensus 82 ND~n--~~--L-~~l~~~-l~I~FkrPs~~eI~srL~~Ic~----kEgl~Id~~~L~~Li~~S~G---D---IRqaLN~L 145 (555)
|... +. . +.+..+ ..|.+..|+..+....|+.+.. ..++.++++.+..++..+.+ | -+++|..|
T Consensus 315 t~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidll 394 (821)
T CHL00095 315 TLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLL 394 (821)
T ss_pred CHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHH
Confidence 7642 11 1 112223 5688899999988888876653 34677999999998887654 3 56899888
Q ss_pred HHHhhc
Q 008751 146 QFWCQN 151 (555)
Q Consensus 146 Qf~s~s 151 (555)
...+..
T Consensus 395 d~a~a~ 400 (821)
T CHL00095 395 DEAGSR 400 (821)
T ss_pred HHHHHH
Confidence 876653
No 186
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=70.54 E-value=2.1 Score=41.30 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=42.4
Q ss_pred cccccCchhHHHhhCCCceEEEeCCCccc--ccccccccCCC-----CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--
Q 008751 2 KSSYTVSLCEAAQHADDEVVEVIHIPDDE--NSHGVMGKSDN-----HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-- 72 (555)
Q Consensus 2 ~~~~~~~~~~iAkelGy~VIELNASDdR~--rn~~v~gsl~~-----~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-- 72 (555)
||.-|...+.-|-..|+.|+-+++++=.. +.....+.... .+-.|+||||+..... +......+-+++..
T Consensus 60 KThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~ 138 (178)
T PF01695_consen 60 KTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPL-SEWEAELLFEIIDERY 138 (178)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS----HHHHHCTHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceeee-cccccccchhhhhHhh
Confidence 44444555544555899999999987211 11100110000 1458999999975543 22334445555543
Q ss_pred cCCcEEEEecCC
Q 008751 73 AKGPVILTSNSN 84 (555)
Q Consensus 73 SKrPIILtCND~ 84 (555)
.+.|+|+|+|-.
T Consensus 139 ~~~~tIiTSN~~ 150 (178)
T PF01695_consen 139 ERKPTIITSNLS 150 (178)
T ss_dssp HT-EEEEEESS-
T ss_pred cccCeEeeCCCc
Confidence 356999999974
No 187
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=70.47 E-value=7.6 Score=40.31 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=29.1
Q ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecC
Q 008751 45 PLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (555)
Q Consensus 45 kLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND 83 (555)
++|||||+|.+.+...++...+.+.+...++|+|+.+-.
T Consensus 126 ~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SAT 164 (358)
T TIGR01587 126 SLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSAT 164 (358)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 789999999998765666666666666566787776544
No 188
>CHL00206 ycf2 Ycf2; Provisional
Probab=68.02 E-value=16 Score=47.36 Aligned_cols=111 Identities=5% Similarity=0.040 Sum_probs=67.2
Q ss_pred CCcEEEEeCCCCCCcccHHH--HHHHHHHHHH-----cCCcEEEEe--cCCCCCCcCccc--e--eEEEecCCCHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGF--IAGIQQIAEK-----AKGPVILTS--NSNNITLPDSLD--R--LEVSFTMPMPKDLLS 109 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf--~sAL~~liek-----SKrPIILtC--ND~n~~L~~l~~--~--l~I~FkrPs~~eI~s 109 (555)
.+-+|.|||+|.+...|..+ .+.|...+.. +...||+++ |.+...=|.++. + ..|.+++|...+=..
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence 46799999999997754432 3455444531 234444443 444322233332 3 578889888776666
Q ss_pred HHHHHHHHcCCCCCHH--HHHHHHHHc----CCcHHHHHHHHHHHhhcCC
Q 008751 110 HLQMICAAEKVELQQH--LLVQLIESC----RADIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 110 rL~~Ic~kEgl~Id~~--~L~~Li~~S----~GDIRqaLN~LQf~s~s~~ 153 (555)
++..+...-|+.+.++ .++.|+..+ +.||...+|.--..+..++
T Consensus 1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6665556667766543 366666654 6788888877666655543
No 189
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=67.99 E-value=20 Score=39.49 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=40.0
Q ss_pred chhHHHhhCCCceEEEeCCCcccc--------c---cc---ccccCCCCCCcEEEEeCCCCCCcc--------c---HHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN--------S---HG---VMGKSDNHVKPLILIEDVDVFFPE--------D---RGF 62 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r--------n---~~---v~gsl~~~kkkLILiDEVD~Lf~e--------D---rGf 62 (555)
...++|+.+|..++.++|+.-... . .. ..+.+....+.+|+|||+|.+... | .|-
T Consensus 132 lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~v 211 (413)
T TIGR00382 132 LAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGV 211 (413)
T ss_pred HHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhH
Confidence 345788999999998888652110 0 00 001111224569999999988752 1 267
Q ss_pred HHHHHHHHH
Q 008751 63 IAGIQQIAE 71 (555)
Q Consensus 63 ~sAL~~lie 71 (555)
+.+|.++++
T Consensus 212 q~~LL~iLe 220 (413)
T TIGR00382 212 QQALLKIIE 220 (413)
T ss_pred HHHHHHHhh
Confidence 888999885
No 190
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=67.98 E-value=4.5 Score=42.93 Aligned_cols=105 Identities=12% Similarity=0.196 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCCCcc----cHHHHHHHHHHHHHcCCcEEEEecCCC-CCCcC---cccee-EEEecC-CCHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE----DRGFIAGIQQIAEKAKGPVILTSNSNN-ITLPD---SLDRL-EVSFTM-PMPKDLLSHLQ 112 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e----DrGf~sAL~~liekSKrPIILtCND~n-~~L~~---l~~~l-~I~Fkr-Ps~~eI~srL~ 112 (555)
+-+++||||++.+..+ .+-|.++|+.+.+..++|||++=+..- ..+.. +-+++ .+...+ -..++....|.
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~ 224 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLA 224 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHH
Confidence 4589999999987553 778999999999999999999865431 11110 11121 111111 12244555444
Q ss_pred HHHHH----cCCCC-CHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 113 MICAA----EKVEL-QQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 113 ~Ic~k----Egl~I-d~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
..-.. +.-.+ +++....|...++|-|-.....|..
T Consensus 225 s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~ 264 (302)
T PF05621_consen 225 SFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNA 264 (302)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHH
Confidence 44322 22233 3566678888887766666555554
No 191
>PF05729 NACHT: NACHT domain
Probab=67.67 E-value=13 Score=33.16 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=49.8
Q ss_pred CCcEEEEeCCCCCCcccH-----HHHHHHHHHHHH---cCCcEEEEecCCCC-CCcCccce-eEEEecCCCHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDR-----GFIAGIQQIAEK---AKGPVILTSNSNNI-TLPDSLDR-LEVSFTMPMPKDLLSHLQ 112 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDr-----Gf~sAL~~liek---SKrPIILtCND~n~-~L~~l~~~-l~I~FkrPs~~eI~srL~ 112 (555)
++-+||||-+|-+...++ .+...|..++.. .+++||+||+.... .+.+.+.. ..+....-+..++..++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 456999999999988533 244456667765 46789999987542 23333332 467777888889988887
Q ss_pred HHH
Q 008751 113 MIC 115 (555)
Q Consensus 113 ~Ic 115 (555)
...
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 653
No 192
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=66.87 E-value=41 Score=36.17 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=86.1
Q ss_pred hhHHHhhCCCceEEEeCCCcccccccccccCCC-CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCC------------
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKSDN-HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKG------------ 75 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~~v~gsl~~-~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKr------------ 75 (555)
...+|+|+|.++-=-.+ ...+|..-..+-+++ ....+++|||++.|... --.-|...|+.-+.
T Consensus 69 A~IIA~Emgvn~k~tsG-p~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~---vEE~LYpaMEDf~lDI~IG~gp~Ars 144 (332)
T COG2255 69 AHIIANELGVNLKITSG-PALEKPGDLAAILTNLEEGDVLFIDEIHRLSPA---VEEVLYPAMEDFRLDIIIGKGPAARS 144 (332)
T ss_pred HHHHHHHhcCCeEeccc-ccccChhhHHHHHhcCCcCCeEEEehhhhcChh---HHHHhhhhhhheeEEEEEccCCccce
Confidence 45788888876432211 111210000111122 24679999999999763 11233444443211
Q ss_pred ------cEEEEe--cCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 76 ------PVILTS--NSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 76 ------PIILtC--ND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
||=|+- +.....-.+++++ ...++..-+.+++...+..-+..-++.++++....|+..++|=-|=|...|
T Consensus 145 v~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 145 IRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred EeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHH
Confidence 444432 2222222234555 566777788999999999999999999999999999999999999999999
Q ss_pred HHH
Q 008751 146 QFW 148 (555)
Q Consensus 146 Qf~ 148 (555)
...
T Consensus 225 rRV 227 (332)
T COG2255 225 RRV 227 (332)
T ss_pred HHH
Confidence 753
No 193
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=66.63 E-value=40 Score=36.49 Aligned_cols=106 Identities=12% Similarity=0.143 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCcccee-EEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDRL-EVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~l-~I~Fkr 101 (555)
....++|||||.|... .+..|.++++.. .++||++++..- ..+ .+++.++ .+.+.-
T Consensus 232 ~~Gtl~l~~i~~l~~~---~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~ 308 (469)
T PRK10923 232 DGGTLFLDEIGDMPLD---VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHL 308 (469)
T ss_pred CCCEEEEeccccCCHH---HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecC
Confidence 3567899999999765 456777777653 237888887531 111 2233332 334444
Q ss_pred CCH----HH----HHHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 102 PMP----KD----LLSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 102 Ps~----~e----I~srL~~Ic~kEgl---~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
|+. ++ +..+|...+..-|. .++++.+..|..+. -|++|+.-|.++.....
T Consensus 309 PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 309 PPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 442 22 34455555555443 47899999998875 89999999999876653
No 194
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=65.79 E-value=19 Score=38.32 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=54.1
Q ss_pred CCcEEEEeCCCCCC----c----ccHHHHHHHHHHHHH-------cCCcEEEEecCCCCCCcCcc-c-e--eEEEecCCC
Q 008751 43 VKPLILIEDVDVFF----P----EDRGFIAGIQQIAEK-------AKGPVILTSNSNNITLPDSL-D-R--LEVSFTMPM 103 (555)
Q Consensus 43 kkkLILiDEVD~Lf----~----eDrGf~sAL~~liek-------SKrPIILtCND~n~~L~~l~-~-~--l~I~FkrPs 103 (555)
.+.+|+|||.|.+- + +||--++.+..+++. .++.+|-.+|...-.-|.++ + + ..|.|..|+
T Consensus 264 aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 264 APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence 57899999999772 2 488888888888875 35668888888763223333 3 3 579999888
Q ss_pred HHHHHHHHHHHHHHcCCCCCH
Q 008751 104 PKDLLSHLQMICAAEKVELQQ 124 (555)
Q Consensus 104 ~~eI~srL~~Ic~kEgl~Id~ 124 (555)
. +-+.|++.|-.+ ++.+++
T Consensus 344 e-~aRarIlQIHsR-KMnv~~ 362 (424)
T KOG0652|consen 344 E-EARARILQIHSR-KMNVSD 362 (424)
T ss_pred h-HHHHHHHHHhhh-hcCCCC
Confidence 5 566677666433 344443
No 195
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.72 E-value=5.4 Score=44.12 Aligned_cols=140 Identities=15% Similarity=0.083 Sum_probs=83.3
Q ss_pred cCchhHHHhhCCCceEEEeCCCc----ccc-cccccccC---CCCCCcEEEEeCCCCCCcc-----c----HHHHHHHHH
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPD----DEN-SHGVMGKS---DNHVKPLILIEDVDVFFPE-----D----RGFIAGIQQ 68 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDd----R~r-n~~v~gsl---~~~kkkLILiDEVD~Lf~e-----D----rGf~sAL~~ 68 (555)
++..-++|-|+|-.++-+.+|.- |+. ...+.--| -...++.|+|||||.|... + |-+.+.|.-
T Consensus 259 TlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLv 338 (491)
T KOG0738|consen 259 TLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLV 338 (491)
T ss_pred HHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 45667899999988887777762 221 11111100 1235789999999998641 2 334444433
Q ss_pred HHH-------HcCCcEEEEecCCCCCCcC-ccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----c
Q 008751 69 IAE-------KAKGPVILTSNSNNITLPD-SLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----C 134 (555)
Q Consensus 69 lie-------kSKrPIILtCND~n~~L~~-l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~----S 134 (555)
.|. .+|+=+||.++..-=-|-. ++.+ ..|....|+. +-++-|..|+..+-..-++-.++.|++. +
T Consensus 339 QmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~-~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGyS 417 (491)
T KOG0738|consen 339 QMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDA-EARSALIKILLRSVELDDPVNLEDLAERSEGYS 417 (491)
T ss_pred HhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCH-HHHHHHHHHhhccccCCCCccHHHHHHHhcCCC
Confidence 332 2466677777663212222 2233 3566766664 6678888888887666566566666664 5
Q ss_pred CCcHHHHHHHHH
Q 008751 135 RADIRKTIMHLQ 146 (555)
Q Consensus 135 ~GDIRqaLN~LQ 146 (555)
+.|||-.--...
T Consensus 418 GaDI~nvCreAs 429 (491)
T KOG0738|consen 418 GADITNVCREAS 429 (491)
T ss_pred hHHHHHHHHHHH
Confidence 668886554433
No 196
>PHA02244 ATPase-like protein
Probab=65.47 E-value=13 Score=40.83 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=57.4
Q ss_pred chhHHHhhCCCceEEEeCCCccccc--c-cccccCC-------CCCCcEEEEeCCCCCCcccHHHHHHHHHHHH------
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDENS--H-GVMGKSD-------NHVKPLILIEDVDVFFPEDRGFIAGIQQIAE------ 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~rn--~-~v~gsl~-------~~kkkLILiDEVD~Lf~eDrGf~sAL~~lie------ 71 (555)
..+++|+.+|..++.+|+..+.... . ...+.+. -....+++|||+|.+..+- +..|..++.
T Consensus 135 LA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~v---q~~L~~lLd~r~l~l 211 (383)
T PHA02244 135 IAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEA---LIIINSAIANKFFDF 211 (383)
T ss_pred HHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHH---HHHHHHHhccCeEEe
Confidence 3567888899999999964321100 0 0011111 1235799999999997653 344444443
Q ss_pred -------HcCCcEEEEecCCC----------CCCc-Cccce-eEEEecCCCHHHH
Q 008751 72 -------KAKGPVILTSNSNN----------ITLP-DSLDR-LEVSFTMPMPKDL 107 (555)
Q Consensus 72 -------kSKrPIILtCND~n----------~~L~-~l~~~-l~I~FkrPs~~eI 107 (555)
....++|+++|... +.+. .++++ ..|.|..|+..+.
T Consensus 212 ~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~~E~ 266 (383)
T PHA02244 212 ADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEKIEH 266 (383)
T ss_pred cCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcHHHH
Confidence 13567999999742 2222 24455 5688998875443
No 197
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=64.42 E-value=16 Score=36.13 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=44.9
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCC--CCCCcCccce-eEEE-ecCCCHHHHHHHHHHHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN--NITLPDSLDR-LEVS-FTMPMPKDLLSHLQMIC 115 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~--n~~L~~l~~~-l~I~-FkrPs~~eI~srL~~Ic 115 (555)
-.+||+||+--|=---+.|..++.++++..| |+|.|-.-. +|.+.+++.. ..+- ..+-+-+.|..++..+.
T Consensus 101 aDvIIIDEIGpMElks~~f~~~ve~vl~~~k-pliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 101 ADVIIIDEIGPMELKSKKFREAVEEVLKSGK-PLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEILSVL 175 (179)
T ss_pred CCEEEEecccchhhccHHHHHHHHHHhcCCC-cEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHHHHh
Confidence 3899999999884446789999999997655 888887543 4444444442 2222 33334444555544443
No 198
>PF13173 AAA_14: AAA domain
Probab=63.71 E-value=17 Score=32.52 Aligned_cols=92 Identities=13% Similarity=0.216 Sum_probs=58.7
Q ss_pred HHHhhCC--CceEEEeCCCccccc---c----cccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-CCcEEEE
Q 008751 11 EAAQHAD--DEVVEVIHIPDDENS---H----GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-KGPVILT 80 (555)
Q Consensus 11 ~iAkelG--y~VIELNASDdR~rn---~----~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-KrPIILt 80 (555)
.+|+++. .+++.+|..|.+.+. . ..... ...++++|+||||..+. +++.++..+.... +..||+|
T Consensus 21 ~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iDEiq~~~----~~~~~lk~l~d~~~~~~ii~t 95 (128)
T PF13173_consen 21 QLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL-IKPGKKYIFIDEIQYLP----DWEDALKFLVDNGPNIKIILT 95 (128)
T ss_pred HHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh-hccCCcEEEEehhhhhc----cHHHHHHHHHHhccCceEEEE
Confidence 4555555 889999998855421 0 11111 11257899999999984 3778888888876 6789999
Q ss_pred ecCCCCC---CcCccc-e-eEEEecCCCHHHH
Q 008751 81 SNSNNIT---LPDSLD-R-LEVSFTMPMPKDL 107 (555)
Q Consensus 81 CND~n~~---L~~l~~-~-l~I~FkrPs~~eI 107 (555)
....... ....+. + ..+...+.+-.|+
T Consensus 96 gS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 96 GSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8876421 222222 3 5677777666553
No 199
>smart00350 MCM minichromosome maintenance proteins.
Probab=63.49 E-value=63 Score=36.26 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=54.3
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH---------------cCCcEEEEecCCCC------------CCcC-ccce
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---------------AKGPVILTSNSNNI------------TLPD-SLDR 94 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek---------------SKrPIILtCND~n~------------~L~~-l~~~ 94 (555)
...++++||+|.|...+ +.+|.+.|+. +++.||.++|-... .+++ ++++
T Consensus 300 ~~Gil~iDEi~~l~~~~---q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsR 376 (509)
T smart00350 300 DNGVCCIDEFDKMDDSD---RTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSR 376 (509)
T ss_pred CCCEEEEechhhCCHHH---HHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCc
Confidence 46799999999997753 5666666653 34568888886421 3343 4567
Q ss_pred eEEE---ecCCCHHHHHHHHHHHHHHc---------C--CCCCHHHHHHHHHHcCC
Q 008751 95 LEVS---FTMPMPKDLLSHLQMICAAE---------K--VELQQHLLVQLIESCRA 136 (555)
Q Consensus 95 l~I~---FkrPs~~eI~srL~~Ic~kE---------g--l~Id~~~L~~Li~~S~G 136 (555)
+.+- ...|+.+.=...+..|.... . -.++.+.|.+.+.+++.
T Consensus 377 FdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~ 432 (509)
T smart00350 377 FDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYARE 432 (509)
T ss_pred eeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHh
Confidence 6433 35566654444444443211 1 24667777777666654
No 200
>PRK08181 transposase; Validated
Probab=63.38 E-value=6.1 Score=40.90 Aligned_cols=78 Identities=8% Similarity=0.018 Sum_probs=45.1
Q ss_pred cCchhHHHhhCCCceEEEeCCCcccc--cccccccC----C-CCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCc
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPDDEN--SHGVMGKS----D-NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGP 76 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDdR~r--n~~v~gsl----~-~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrP 76 (555)
|...+..|-+.|+.|+-+++.+=... .....+.. . -.+..|+||||++.+... ......|-+++.. -+.|
T Consensus 123 a~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~-~~~~~~Lf~lin~R~~~~s 201 (269)
T PRK08181 123 AAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKD-QAETSVLFELISARYERRS 201 (269)
T ss_pred HHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCC-HHHHHHHHHHHHHHHhCCC
Confidence 33333333456999999998662211 00000110 0 024679999999877653 3334456666653 2469
Q ss_pred EEEEecCC
Q 008751 77 VILTSNSN 84 (555)
Q Consensus 77 IILtCND~ 84 (555)
+|+|+|-.
T Consensus 202 ~IiTSN~~ 209 (269)
T PRK08181 202 ILITANQP 209 (269)
T ss_pred EEEEcCCC
Confidence 99999985
No 201
>PF14516 AAA_35: AAA-like domain
Probab=62.57 E-value=44 Score=35.22 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=59.6
Q ss_pred CCcEEEEeCCCCCCcc---cHHHHHHHHHHHHHcC-------CcEEEEecC-CCCC---CcCccc-eeEEEecCCCHHHH
Q 008751 43 VKPLILIEDVDVFFPE---DRGFIAGIQQIAEKAK-------GPVILTSNS-NNIT---LPDSLD-RLEVSFTMPMPKDL 107 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e---DrGf~sAL~~liekSK-------rPIILtCND-~n~~---L~~l~~-~l~I~FkrPs~~eI 107 (555)
++-+|+|||||.+++. ...|.+.|+...+..+ ..+|++-.. .... -..++. ...|+...-+.+++
T Consensus 127 ~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev 206 (331)
T PF14516_consen 127 KPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEV 206 (331)
T ss_pred CCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHH
Confidence 5669999999999973 3568888988877533 223433321 1111 012333 35666666677887
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH
Q 008751 108 LSHLQMICAAEKVELQQHLLVQLIESCRADI 138 (555)
Q Consensus 108 ~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDI 138 (555)
..-+ .+-+...++..+++|...++|=-
T Consensus 207 ~~L~----~~~~~~~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 207 QELA----QRYGLEFSQEQLEQLMDWTGGHP 233 (331)
T ss_pred HHHH----HhhhccCCHHHHHHHHHHHCCCH
Confidence 6544 44577788888999999888863
No 202
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=62.15 E-value=8.1 Score=37.04 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=29.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~ 84 (555)
...+|||||+-.|=-.-.+|+.++.+++. +..|+|.+-...
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~-s~~~vi~vv~~~ 135 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD-SNKPVIGVVHKR 135 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC-TTSEEEEE--SS
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc-CCCcEEEEEecC
Confidence 45799999999996667789999999998 677999998776
No 203
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.64 E-value=35 Score=40.68 Aligned_cols=95 Identities=15% Similarity=0.231 Sum_probs=57.7
Q ss_pred CCCcEEEEeCCCCCCcc------cHHHHH-----HHHHHHH---HcCCcEEEEecCCC-CCCcCcc-c----eeEEEecC
Q 008751 42 HVKPLILIEDVDVFFPE------DRGFIA-----GIQQIAE---KAKGPVILTSNSNN-ITLPDSL-D----RLEVSFTM 101 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e------DrGf~s-----AL~~lie---kSKrPIILtCND~n-~~L~~l~-~----~l~I~Fkr 101 (555)
+.+.+|++|++|.++.. ..|+.. .|.+.+. +.++.|.+++.-.. ..+.+++ + +.+++...
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 46899999999988761 223222 2222222 23344555554432 1233333 2 36788888
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 008751 102 PMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA 136 (555)
Q Consensus 102 Ps~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G 136 (555)
|...+=...|..++.+-...+..+.|+-+...+.|
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEG 607 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEG 607 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC
Confidence 88888888888888776655566666666666544
No 204
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=59.16 E-value=12 Score=37.20 Aligned_cols=88 Identities=13% Similarity=0.172 Sum_probs=52.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHH--HcCCcEEEEecCCCCCCcCccc--eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE--KAKGPVILTSNSNNITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~lie--kSKrPIILtCND~n~~L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
++-|||||+|+... -+..+..... ..++.||+|+.+.. +..... ...+.....+..+....+...+...
T Consensus 101 ~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~kilvTTR~~~--v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 101 KRCLLVLDDVWDEE-----DLEELREPLPSFSSGSKILVTTRDRS--VAGSLGGTDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp TSEEEEEEEE-SHH-----HH-------HCHHSS-EEEEEESCGG--GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred ccceeeeeeecccc-----cccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 57899999998654 2333333322 23677999998854 222222 4678888889999888888887554
Q ss_pred C---CCCCHHHHHHHHHHcCCc
Q 008751 119 K---VELQQHLLVQLIESCRAD 137 (555)
Q Consensus 119 g---l~Id~~~L~~Li~~S~GD 137 (555)
. -.-.++...+|++.++|=
T Consensus 174 ~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 174 ESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp S----TTSCTHHHHHHHHTTT-
T ss_pred cccccccccccccccccccccc
Confidence 4 122256778999998773
No 205
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=59.11 E-value=43 Score=35.91 Aligned_cols=108 Identities=17% Similarity=0.245 Sum_probs=61.3
Q ss_pred ccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCC--CCCCc-Cccce--eEEE
Q 008751 37 GKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSN--NITLP-DSLDR--LEVS 98 (555)
Q Consensus 37 gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~--n~~L~-~l~~~--l~I~ 98 (555)
|-+......++++||++.+.. ..+++|.+.++.. ..|+|+++... ...++ .++++ ..+.
T Consensus 125 GlL~~A~~GvL~lDEi~~L~~---~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~ 201 (337)
T TIGR02030 125 GLLARANRGILYIDEVNLLED---HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAE 201 (337)
T ss_pred CcceeccCCEEEecChHhCCH---HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEE
Confidence 333333458999999999965 4677787777642 25677777653 22233 34455 3555
Q ss_pred ecCCCH-HHHHHHHH-------------------------HHHH----HcCCCCCHHHHHHHHH---HcCCc-HHHHHHH
Q 008751 99 FTMPMP-KDLLSHLQ-------------------------MICA----AEKVELQQHLLVQLIE---SCRAD-IRKTIMH 144 (555)
Q Consensus 99 FkrPs~-~eI~srL~-------------------------~Ic~----kEgl~Id~~~L~~Li~---~S~GD-IRqaLN~ 144 (555)
+..|.. .+-...|. .|.. -.++.+++.+++.|+. ..+.| .|..|..
T Consensus 202 l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l 281 (337)
T TIGR02030 202 IRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTL 281 (337)
T ss_pred CCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHH
Confidence 666654 22111111 1111 1346788877666544 44443 6888877
Q ss_pred HHH
Q 008751 145 LQF 147 (555)
Q Consensus 145 LQf 147 (555)
+..
T Consensus 282 ~ra 284 (337)
T TIGR02030 282 NRA 284 (337)
T ss_pred HHH
Confidence 764
No 206
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.53 E-value=11 Score=41.98 Aligned_cols=139 Identities=11% Similarity=0.034 Sum_probs=81.1
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc-----cHHHHHHH-HHHHHH-
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE-----DRGFIAGI-QQIAEK- 72 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e-----DrGf~sAL-~~liek- 72 (555)
...+||-|.+-.++-+-||.=-++ ...+..-+ ...++.+|+|||||.++.. ...-.+.. .-++..
T Consensus 202 L~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~ 281 (428)
T KOG0740|consen 202 LAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD 281 (428)
T ss_pred HHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhc
Confidence 456899999999999999873221 11111111 2246899999999999763 11111111 112221
Q ss_pred -------cCCcEEEEecCCCCCCcC-ccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCCcH
Q 008751 73 -------AKGPVILTSNSNNITLPD-SLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----CRADI 138 (555)
Q Consensus 73 -------SKrPIILtCND~n~~L~~-l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~----S~GDI 138 (555)
.++-+|-++|-+.. +-. .+.+ ..+.+.+|..+.-...+....+..+..+....+..|++. +++||
T Consensus 282 ~~~s~~~drvlvigaTN~P~e-~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi 360 (428)
T KOG0740|consen 282 GKNSAPDDRVLVIGATNRPWE-LDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDI 360 (428)
T ss_pred cccCCCCCeEEEEecCCCchH-HHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccH
Confidence 12223333333211 111 1112 457789999888777788887777788888888888875 56787
Q ss_pred HHHHHHHHH
Q 008751 139 RKTIMHLQF 147 (555)
Q Consensus 139 RqaLN~LQf 147 (555)
....-.-++
T Consensus 361 ~~l~kea~~ 369 (428)
T KOG0740|consen 361 TALCKEAAM 369 (428)
T ss_pred HHHHHHhhc
Confidence 776654443
No 207
>PRK10865 protein disaggregation chaperone; Provisional
Probab=57.09 E-value=17 Score=43.36 Aligned_cols=93 Identities=10% Similarity=0.127 Sum_probs=60.3
Q ss_pred CCcEEEEeCCCCCCcc--cHH---HHHHHHHHHHHcCCcEEEEecCCCC----CC-cCcccee-EEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE--DRG---FIAGIQQIAEKAKGPVILTSNSNNI----TL-PDSLDRL-EVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e--DrG---f~sAL~~liekSKrPIILtCND~n~----~L-~~l~~~l-~I~FkrPs~~eI~srL 111 (555)
.+.+++|||+|.+... ..| ....|...+......+|.++|-... .+ +.+..++ .|.+..|+..+....|
T Consensus 271 ~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL 350 (857)
T PRK10865 271 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 350 (857)
T ss_pred CCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHH
Confidence 4679999999999742 112 2334556666666666666665321 01 1222343 7889999999988888
Q ss_pred HHHHHH----cCCCCCHHHHHHHHHHcC
Q 008751 112 QMICAA----EKVELQQHLLVQLIESCR 135 (555)
Q Consensus 112 ~~Ic~k----Egl~Id~~~L~~Li~~S~ 135 (555)
+.+..+ .++.++++.+...+..+.
T Consensus 351 ~~l~~~~e~~~~v~~~d~a~~~a~~ls~ 378 (857)
T PRK10865 351 RGLKERYELHHHVQITDPAIVAAATLSH 378 (857)
T ss_pred HHHhhhhccCCCCCcCHHHHHHHHHHhh
Confidence 877643 367888888888766554
No 208
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=56.44 E-value=10 Score=33.44 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=32.2
Q ss_pred CCCcEEEEeCCCCCCcc--------c---HHHHHHHHHHHHHcCCcEEEEecCCCC
Q 008751 42 HVKPLILIEDVDVFFPE--------D---RGFIAGIQQIAEKAKGPVILTSNSNNI 86 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e--------D---rGf~sAL~~liekSKrPIILtCND~n~ 86 (555)
.+..+||+||+..+.+. + +.+..+|..++++.++++|+|.+..+.
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 35789999999977532 1 244555666666678999999998753
No 209
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=55.59 E-value=15 Score=35.25 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=40.0
Q ss_pred hhHHHhhCCC----ceEEEeCCCcccc---cccc-------cccCCCCCCcEEEEeCCCCCCcc--------cHHHHHHH
Q 008751 9 LCEAAQHADD----EVVEVIHIPDDEN---SHGV-------MGKSDNHVKPLILIEDVDVFFPE--------DRGFIAGI 66 (555)
Q Consensus 9 ~~~iAkelGy----~VIELNASDdR~r---n~~v-------~gsl~~~kkkLILiDEVD~Lf~e--------DrGf~sAL 66 (555)
..++|+.++. .++-+|++.--.. .+.+ .+........+|+|||+|-.... -.+.+.+|
T Consensus 20 a~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~L 99 (171)
T PF07724_consen 20 AKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSL 99 (171)
T ss_dssp HHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccccccccchhhHHHHHHHH
Confidence 4577888885 8999999883320 0111 01111112359999999988540 12688999
Q ss_pred HHHHHH
Q 008751 67 QQIAEK 72 (555)
Q Consensus 67 ~~liek 72 (555)
.++++.
T Consensus 100 L~~le~ 105 (171)
T PF07724_consen 100 LQLLEG 105 (171)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999986
No 210
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=55.47 E-value=38 Score=36.30 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCC--CCCCcC-ccce--eEEEecCCCH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSN--NITLPD-SLDR--LEVSFTMPMP 104 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~--n~~L~~-l~~~--l~I~FkrPs~ 104 (555)
...++++||++.+... .+++|.+.|+.. ..||++++... ...+++ ++++ ..+....|..
T Consensus 128 ~~GiL~lDEInrl~~~---~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~ 204 (334)
T PRK13407 128 NRGYLYIDEVNLLEDH---IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRD 204 (334)
T ss_pred CCCeEEecChHhCCHH---HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCc
Confidence 3469999999999654 677888888743 25688887643 222332 4455 3455555544
No 211
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=55.16 E-value=40 Score=35.02 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=68.8
Q ss_pred hCCCceEEEeCCCc--cccc-ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCc----EEEEecCCC
Q 008751 15 HADDEVVEVIHIPD--DENS-HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGP----VILTSNSNN 85 (555)
Q Consensus 15 elGy~VIELNASDd--R~rn-~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrP----IILtCND~n 85 (555)
.-|..+||+...+= .... .... ....+.+|++|| .-|+++...-.+|..+++=+ .+| |.-|+|-.+
T Consensus 78 ~~GLRlIev~k~~L~~l~~l~~~l~---~~~~kFIlf~DD--LsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 78 DQGLRLIEVSKEDLGDLPELLDLLR---DRPYKFILFCDD--LSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred hcCceEEEECHHHhccHHHHHHHHh---cCCCCEEEEecC--CCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 55788999988661 1110 0111 122467999995 55775333447888887742 333 444555443
Q ss_pred CCCcC------------c------------cce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008751 86 ITLPD------------S------------LDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQ 129 (555)
Q Consensus 86 ~~L~~------------l------------~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~ 129 (555)
. ++. + -++ +.|.|.+|+.++-...+...+.+.|+.++++.+.+
T Consensus 153 L-v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~ 221 (249)
T PF05673_consen 153 L-VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQ 221 (249)
T ss_pred c-cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 1 111 0 012 58999999999999999999999999999855543
No 212
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=53.75 E-value=54 Score=36.28 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=76.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH-------------cCCcEEEEecCC--CCCCc--Cccc-eeEEEecCCCH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK-------------AKGPVILTSNSN--NITLP--DSLD-RLEVSFTMPMP 104 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek-------------SKrPIILtCND~--n~~L~--~l~~-~l~I~FkrPs~ 104 (555)
....+++|||..|.-+ ++..|.+++++ ..+++|+.+|.. ...+. +++. +..+..+-|+.
T Consensus 173 ~GGtLfLDEI~~LP~~---~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpL 249 (403)
T COG1221 173 NGGTLFLDEIHRLPPE---GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPL 249 (403)
T ss_pred CCCEEehhhhhhCCHh---HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCCh
Confidence 3579999999999765 67788888886 356788888875 23333 5555 34445555553
Q ss_pred --------HHHHHHHHHHHHHcCCCCC---HHHHHHHHHH-cCCcHHHHHHHHHHHhhcC
Q 008751 105 --------KDLLSHLQMICAAEKVELQ---QHLLVQLIES-CRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 105 --------~eI~srL~~Ic~kEgl~Id---~~~L~~Li~~-S~GDIRqaLN~LQf~s~s~ 152 (555)
.-+..+|...|.+-|..+. ++.+..|..+ .-|+||.--|..++.+...
T Consensus 250 rER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 250 RERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 2345666777888887654 4678888776 4899999999999988765
No 213
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=52.92 E-value=96 Score=33.44 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=73.3
Q ss_pred hhHHHhhCCCceEEEeCCCcccc------cccc--cc---------cCCC--CCCcEEEEeCCCCCCcccHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN------SHGV--MG---------KSDN--HVKPLILIEDVDVFFPEDRGFIAGIQQI 69 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r------n~~v--~g---------sl~~--~kkkLILiDEVD~Lf~eDrGf~sAL~~l 69 (555)
...+|+.+|+.++-+|.+.+... ...+ .+ .+.. ...-++|+||+|....+ -+.+|..+
T Consensus 81 a~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~---~~~~L~~l 157 (327)
T TIGR01650 81 IEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPD---VMFVIQRV 157 (327)
T ss_pred HHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHH---HHHHHHHH
Confidence 45789999999999999885432 1111 11 1100 12346999999988654 34566666
Q ss_pred HHH--------c-----CC---cEEEEecCCC-----------CCCcC-cccee--EEEecCCCHHHHHHHHHHHHHHcC
Q 008751 70 AEK--------A-----KG---PVILTSNSNN-----------ITLPD-SLDRL--EVSFTMPMPKDLLSHLQMICAAEK 119 (555)
Q Consensus 70 iek--------S-----Kr---PIILtCND~n-----------~~L~~-l~~~l--~I~FkrPs~~eI~srL~~Ic~kEg 119 (555)
++. . .. .+|.|+|... ..++. .++++ .+.+..|+.++-...|..-+. +
T Consensus 158 LE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~--~ 235 (327)
T TIGR01650 158 LEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK--G 235 (327)
T ss_pred hccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc--C
Confidence 652 0 12 2577777632 12222 34564 457888988776666654432 2
Q ss_pred CC--CCHHHHHHHHHHcCCcHHH
Q 008751 120 VE--LQQHLLVQLIESCRADIRK 140 (555)
Q Consensus 120 l~--Id~~~L~~Li~~S~GDIRq 140 (555)
+. .++..++.+++.. ..+|+
T Consensus 236 ~~~~~~~~i~~~mV~la-~~tR~ 257 (327)
T TIGR01650 236 FDDTEGKDIINAMVRVA-DMTRN 257 (327)
T ss_pred CCccchHHHHHHHHHHH-HHHHh
Confidence 22 1356677776654 55665
No 214
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=52.88 E-value=29 Score=40.15 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=81.6
Q ss_pred cCchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcccHH-----HH----HHHHH
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPEDRG-----FI----AGIQQ 68 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~eDrG-----f~----sAL~~ 68 (555)
.+...++|.|.|...+.+..||-.+= ...+..-+ .+..+-+|+|||+|.+-.. || +- ..|++
T Consensus 197 TLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~-Rg~g~GggnderEQTLNQ 275 (596)
T COG0465 197 TLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQ-RGAGLGGGNDEREQTLNQ 275 (596)
T ss_pred HHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccc-cCCCCCCCchHHHHHHHH
Confidence 46677999999999999999993320 00011000 1123569999999988663 21 11 24555
Q ss_pred HHHH-----cCCcEEEEecCCCC-CC-cCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH---
Q 008751 69 IAEK-----AKGPVILTSNSNNI-TL-PDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIES--- 133 (555)
Q Consensus 69 liek-----SKrPIILtCND~n~-~L-~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~-L~~Li~~--- 133 (555)
++-. ++.+||++++..-+ .+ +.++. + -.|....|....-...|. ++..+..+++++ +..|+..
T Consensus 276 lLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilk--vH~~~~~l~~~Vdl~~iAr~tpG 353 (596)
T COG0465 276 LLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILK--VHAKNKPLAEDVDLKKIARGTPG 353 (596)
T ss_pred HHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHH--HHhhcCCCCCcCCHHHHhhhCCC
Confidence 5543 46788888876543 22 22222 2 467778888776666666 344444443221 2224433
Q ss_pred -cCCcHHHHHHHHHHHhh
Q 008751 134 -CRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 134 -S~GDIRqaLN~LQf~s~ 150 (555)
++.|+-..+|.--.+..
T Consensus 354 fsGAdL~nl~NEAal~aa 371 (596)
T COG0465 354 FSGADLANLLNEAALLAA 371 (596)
T ss_pred cccchHhhhHHHHHHHHH
Confidence 56677777766554433
No 215
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=51.91 E-value=21 Score=39.94 Aligned_cols=92 Identities=15% Similarity=0.316 Sum_probs=62.9
Q ss_pred CCcEEEEeCCCCCCcc---------cHHHHHHHHHHHHHcC----------CcEEEEecCC------CCCCcCcccee--
Q 008751 43 VKPLILIEDVDVFFPE---------DRGFIAGIQQIAEKAK----------GPVILTSNSN------NITLPDSLDRL-- 95 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e---------DrGf~sAL~~liekSK----------rPIILtCND~------n~~L~~l~~~l-- 95 (555)
...+|+|||+|-+... -.|-+++|.++++-+. .-|.|||--. +-.+|.+.-++
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 4679999999988642 2678889999998421 2377777543 11234444454
Q ss_pred EEEecCCCHHHHHHHH-----------HHHHHHcCCC--CCHHHHHHHHHHc
Q 008751 96 EVSFTMPMPKDLLSHL-----------QMICAAEKVE--LQQHLLVQLIESC 134 (555)
Q Consensus 96 ~I~FkrPs~~eI~srL-----------~~Ic~kEgl~--Id~~~L~~Li~~S 134 (555)
.+.+..++.+++...| ......||+. ++++.|..|++.+
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 380 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 380 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence 5667888877776666 2445778885 5799999998765
No 216
>PRK12377 putative replication protein; Provisional
Probab=51.57 E-value=18 Score=37.03 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=41.5
Q ss_pred hhCCCceEEEeCCCcccc--cccccc-----cCC-CCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEec
Q 008751 14 QHADDEVVEVIHIPDDEN--SHGVMG-----KSD-NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSN 82 (555)
Q Consensus 14 kelGy~VIELNASDdR~r--n~~v~g-----sl~-~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCN 82 (555)
...|+.|+-+.+.+-... .....+ .+. -.+..||||||+...... ...+..|..++.. .+.|+|+|+|
T Consensus 126 ~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s-~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 126 LAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRET-KNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred HHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC-HHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 344888998888762211 000000 010 025679999999765432 2234566667664 4689999999
Q ss_pred CC
Q 008751 83 SN 84 (555)
Q Consensus 83 D~ 84 (555)
-.
T Consensus 205 l~ 206 (248)
T PRK12377 205 LN 206 (248)
T ss_pred CC
Confidence 74
No 217
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=50.39 E-value=29 Score=37.60 Aligned_cols=64 Identities=19% Similarity=0.389 Sum_probs=42.9
Q ss_pred CCCcEEEEeCCCCCCc--------ccHHHHHHHHHHHHH-----c--CCcEEEEecCCCCCCcCccc--e--eEEEecCC
Q 008751 42 HVKPLILIEDVDVFFP--------EDRGFIAGIQQIAEK-----A--KGPVILTSNSNNITLPDSLD--R--LEVSFTMP 102 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~--------eDrGf~sAL~~liek-----S--KrPIILtCND~n~~L~~l~~--~--l~I~FkrP 102 (555)
+.+++++|||+|.+-. +.|--++.+..+++. + -+-+|+.+|.....=|.++. + ..|.|..|
T Consensus 277 ~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~p 356 (440)
T KOG0726|consen 277 HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 356 (440)
T ss_pred cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCC
Confidence 4679999999997732 345555666666665 2 35799999998643333332 2 67899888
Q ss_pred CHH
Q 008751 103 MPK 105 (555)
Q Consensus 103 s~~ 105 (555)
..+
T Consensus 357 De~ 359 (440)
T KOG0726|consen 357 DEK 359 (440)
T ss_pred chh
Confidence 764
No 218
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=49.81 E-value=40 Score=38.64 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=58.2
Q ss_pred CCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC---------------CcEEEEecCCC--CCCcC-ccceeEE--E
Q 008751 39 SDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK---------------GPVILTSNSNN--ITLPD-SLDRLEV--S 98 (555)
Q Consensus 39 l~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK---------------rPIILtCND~n--~~L~~-l~~~l~I--~ 98 (555)
+......++++||++.+... .+.+|.+.|+... ..+|.|.|-.. ..+++ +++++.+ .
T Consensus 80 L~~A~~GvL~lDEi~rl~~~---~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~ 156 (589)
T TIGR02031 80 LDEAPRGVLYVDMANLLDDG---LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVS 156 (589)
T ss_pred eeeCCCCcEeccchhhCCHH---HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeee
Confidence 33334579999999999764 6778888886432 23444444432 22333 4456444 3
Q ss_pred ecCC-CHHH---HHHHHH----------------HHH----HHcCCCCCHHHHHHHHHH---cCCc-HHHHHHHHHH
Q 008751 99 FTMP-MPKD---LLSHLQ----------------MIC----AAEKVELQQHLLVQLIES---CRAD-IRKTIMHLQF 147 (555)
Q Consensus 99 FkrP-s~~e---I~srL~----------------~Ic----~kEgl~Id~~~L~~Li~~---S~GD-IRqaLN~LQf 147 (555)
...+ +..+ |..+.. .|. ....+.++++.++.|+.. .+-. .|..|..+..
T Consensus 157 ~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ 233 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRA 233 (589)
T ss_pred cCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence 3333 2222 222211 111 123567898888777664 3444 7888877765
No 219
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=49.14 E-value=89 Score=38.67 Aligned_cols=100 Identities=16% Similarity=0.264 Sum_probs=60.9
Q ss_pred CCCcEEEEeCCCCCCcc-----cH---HHHHHHHHHHH--HcCCcEEEEe--cCCCCCCcCccc--e--eEEEecCCCHH
Q 008751 42 HVKPLILIEDVDVFFPE-----DR---GFIAGIQQIAE--KAKGPVILTS--NSNNITLPDSLD--R--LEVSFTMPMPK 105 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e-----Dr---Gf~sAL~~lie--kSKrPIILtC--ND~n~~L~~l~~--~--l~I~FkrPs~~ 105 (555)
.++.+|.||||||+..- ++ --++.|..+|- .++-|+|+|. |.+...-|.++. + ..++|..|+..
T Consensus 362 ~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ 441 (1080)
T KOG0732|consen 362 TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVD 441 (1080)
T ss_pred cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchH
Confidence 46899999999999641 11 12333444443 2566777765 444443344443 2 57999988875
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Q 008751 106 DLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKT 141 (555)
Q Consensus 106 eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqa 141 (555)
.=...|..=-.+..-.+....+..|++.+.|=..+-
T Consensus 442 ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaD 477 (1080)
T KOG0732|consen 442 ARAKILDIHTRKWEPPISRELLLWLAEETSGYGGAD 477 (1080)
T ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHH
Confidence 544444433344456788888888888766555444
No 220
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=49.07 E-value=7.8 Score=34.97 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCCCCccc-HHHHHHHHHHHHHc-CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPED-RGFIAGIQQIAEKA-KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eD-rGf~sAL~~liekS-KrPIILtCND 83 (555)
+-.+|||||+|.+...+ ...+..|.+.++.. +.|+|+++-.
T Consensus 119 ~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT 161 (169)
T PF00270_consen 119 RLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSAT 161 (169)
T ss_dssp TESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESS
T ss_pred cceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeC
Confidence 36899999999998742 22233343333333 4677776644
No 221
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.36 E-value=56 Score=39.03 Aligned_cols=147 Identities=18% Similarity=0.128 Sum_probs=86.6
Q ss_pred cCchhHHHhhCCCceEEEeCCCcccc--c--ccccccCC----CCCCcEEEEeCCCCCCcccHH-----H----HHHHHH
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPDDEN--S--HGVMGKSD----NHVKPLILIEDVDVFFPEDRG-----F----IAGIQQ 68 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDdR~r--n--~~v~gsl~----~~kkkLILiDEVD~Lf~eDrG-----f----~sAL~~ 68 (555)
+|..-++|.|.|..++-+++|+-.+. . .+-...++ ...+.+|++||+|.+...-.| + -..|.+
T Consensus 358 TLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQ 437 (774)
T KOG0731|consen 358 TLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQ 437 (774)
T ss_pred HHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHH
Confidence 45677999999999999999994321 0 00011111 235679999999988652101 1 134666
Q ss_pred HHHH------c-CCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----
Q 008751 69 IAEK------A-KGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES---- 133 (555)
Q Consensus 69 liek------S-KrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~---- 133 (555)
++-. + .+=++..||.+.-.=+.++. + -.|+...|+...=.+.+..-+.+-++..++..+.+|+..
T Consensus 438 ll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf 517 (774)
T KOG0731|consen 438 LLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGF 517 (774)
T ss_pred HHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCC
Confidence 5543 2 23344444544311122222 3 468888888876666665555444455567777777665
Q ss_pred cCCcHHHHHHHHHHHhhcC
Q 008751 134 CRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 134 S~GDIRqaLN~LQf~s~s~ 152 (555)
++-||.-..|.....+...
T Consensus 518 ~gadl~n~~neaa~~a~r~ 536 (774)
T KOG0731|consen 518 SGADLANLCNEAALLAARK 536 (774)
T ss_pred cHHHHHhhhhHHHHHHHHh
Confidence 4567888777777655543
No 222
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=44.74 E-value=65 Score=34.89 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=61.5
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH---------cCCcEEEEecCCCCCCcCcc--------ceeEEEecCCCH
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---------AKGPVILTSNSNNITLPDSL--------DRLEVSFTMPMP 104 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek---------SKrPIILtCND~n~~L~~l~--------~~l~I~FkrPs~ 104 (555)
-+.+|.||||||.|- +|...+|..++.. .|.-+||..|-....+.+.. .+..++++.-.+
T Consensus 177 C~rslFIFDE~DKmp---~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~ 253 (344)
T KOG2170|consen 177 CQRSLFIFDEVDKLP---PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEP 253 (344)
T ss_pred cCCceEEechhhhcC---HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhH
Confidence 357999999999995 4688888888873 34558888888754443211 123444443332
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC
Q 008751 105 KDLLSHLQMICAAEKV----ELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 105 ~eI~srL~~Ic~kEgl----~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~~ 153 (555)
.-+...-.... -|+ -|+...|+.+|=.--.+=|...+.++...++.+
T Consensus 254 ~L~~~~~n~~~--~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg 304 (344)
T KOG2170|consen 254 ALMQSAFNEKA--GGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRG 304 (344)
T ss_pred HHHHhhhcccc--ccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcc
Confidence 22222221211 122 356677777766655555555555565555554
No 223
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=44.72 E-value=1.3e+02 Score=31.32 Aligned_cols=101 Identities=22% Similarity=0.258 Sum_probs=60.8
Q ss_pred chhHHHhhCCCceEEEeCCCcccc------------------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN------------------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQI 69 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r------------------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~l 69 (555)
....+|+.+|..++.++..++-.. .....|.++..-..++++||++..... ++++|...
T Consensus 59 la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~---~q~aLl~~ 135 (329)
T COG0714 59 LARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE---VQNALLEA 135 (329)
T ss_pred HHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH---HHHHHHHH
Confidence 456789999999999999874321 112233333222259999999999654 78888888
Q ss_pred HHH--------c----CCcEEEEecCC------CCCCcC-ccce--eEEEecCC-CHHHHHHHH
Q 008751 70 AEK--------A----KGPVILTSNSN------NITLPD-SLDR--LEVSFTMP-MPKDLLSHL 111 (555)
Q Consensus 70 iek--------S----KrPIILtCND~------n~~L~~-l~~~--l~I~FkrP-s~~eI~srL 111 (555)
++. + ..|++++++.. ...++. .+++ ..+.+..| ...+....+
T Consensus 136 l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 136 LEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred HhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHH
Confidence 885 2 13444444321 223443 4454 56778888 443333333
No 224
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=44.09 E-value=64 Score=32.70 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=62.3
Q ss_pred hhHHHhhCCCceEEEeCCCcccc---cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-------------
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK------------- 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r---n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek------------- 72 (555)
...+|+.+|..++-+|.++...- ..+.+|.... .--+.|||++.|..+ -+++|.+.+..
T Consensus 49 ik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~--GaW~cfdefnrl~~~---vLS~i~~~i~~i~~al~~~~~~~~ 123 (231)
T PF12774_consen 49 IKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQS--GAWLCFDEFNRLSEE---VLSVISQQIQSIQDALRAKQKSFT 123 (231)
T ss_dssp HHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHH--T-EEEEETCCCSSHH---HHHHHHHHHHHHHHHHHCTSSEEE
T ss_pred HHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhc--CchhhhhhhhhhhHH---HHHHHHHHHHHHHHhhcccccccc
Confidence 45789999999999999996532 2233343222 368999999999654 45555444432
Q ss_pred ---------cCCcEEEEecCCC---CCCcCccc--eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008751 73 ---------AKGPVILTSNSNN---ITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLI 131 (555)
Q Consensus 73 ---------SKrPIILtCND~n---~~L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li 131 (555)
-.+-|.+|.|... ..+|+.+. -..+.+..|+...|.. .++...|+.=....-.+|+
T Consensus 124 ~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~e---i~L~s~GF~~a~~La~kl~ 193 (231)
T PF12774_consen 124 LEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIAE---ILLLSQGFKDAKSLAKKLV 193 (231)
T ss_dssp ETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHHH---HHHHCCCTSSHHHHHHHHH
T ss_pred cCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHHH---HHHHHcCchhHHHHHHHHH
Confidence 1244777777442 35666554 3578888888766544 4566677754444444444
No 225
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=43.90 E-value=31 Score=38.56 Aligned_cols=92 Identities=15% Similarity=0.298 Sum_probs=63.4
Q ss_pred CCcEEEEeCCCCCCcc---------cHHHHHHHHHHHHHcC----------CcEEEEecCC------CCCCcCccce--e
Q 008751 43 VKPLILIEDVDVFFPE---------DRGFIAGIQQIAEKAK----------GPVILTSNSN------NITLPDSLDR--L 95 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e---------DrGf~sAL~~liekSK----------rPIILtCND~------n~~L~~l~~~--l 95 (555)
...+|+|||+|-++.. -.|-+++|.++++-+. .-|.|||--. +-.+|.+.-+ .
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 5689999999988642 3578889999998421 2377777442 1123444445 4
Q ss_pred EEEecCCCHHHHHHHH-----------HHHHHHcCCCC--CHHHHHHHHHHc
Q 008751 96 EVSFTMPMPKDLLSHL-----------QMICAAEKVEL--QQHLLVQLIESC 134 (555)
Q Consensus 96 ~I~FkrPs~~eI~srL-----------~~Ic~kEgl~I--d~~~L~~Li~~S 134 (555)
.+.+..++.+++...| +.....||+.+ +++.+..|++.+
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 5678888888877777 23357788754 799999998874
No 226
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.01 E-value=56 Score=38.40 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=81.6
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccCC---CCCCcEEEEeCCCCCCcc---cHH--HHHHHHHHHHH-
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKSD---NHVKPLILIEDVDVFFPE---DRG--FIAGIQQIAEK- 72 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl~---~~kkkLILiDEVD~Lf~e---DrG--f~sAL~~liek- 72 (555)
+..-++|++.+.+++-+-+-.--++ ...+...|. ...+.+|+|||+|.+... ..| .-+-|.+++..
T Consensus 483 ~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEm 562 (693)
T KOG0730|consen 483 LLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM 562 (693)
T ss_pred HHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHc
Confidence 4456899999999988765441111 000111110 124589999999998652 111 12245555543
Q ss_pred -----cCCcEEEEe-cCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH----cCCc
Q 008751 73 -----AKGPVILTS-NSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIES----CRAD 137 (555)
Q Consensus 73 -----SKrPIILtC-ND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~-~L~~Li~~----S~GD 137 (555)
.|.=+|+.+ |-+.-+=+.++. + ..|++..|..+.=...|..-+ +++.++++ .|++|++. ++.|
T Consensus 563 DG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~--kkmp~~~~vdl~~La~~T~g~SGAe 640 (693)
T KOG0730|consen 563 DGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCA--KKMPFSEDVDLEELAQATEGYSGAE 640 (693)
T ss_pred ccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHH--hcCCCCccccHHHHHHHhccCChHH
Confidence 233244444 444322222333 3 568888877655444444433 35777776 68888874 6778
Q ss_pred HHHHHHHHHHHhhcCCC
Q 008751 138 IRKTIMHLQFWCQNKGY 154 (555)
Q Consensus 138 IRqaLN~LQf~s~s~~~ 154 (555)
|+.....--..+....+
T Consensus 641 l~~lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 641 IVAVCQEAALLALRESI 657 (693)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88877766665555544
No 227
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=41.44 E-value=80 Score=36.89 Aligned_cols=89 Identities=12% Similarity=0.199 Sum_probs=56.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC-----------------------CcEEEEecCCC--CCCcCccce---
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK-----------------------GPVILTSNSNN--ITLPDSLDR--- 94 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK-----------------------rPIILtCND~n--~~L~~l~~~--- 94 (555)
....++|||++.|. ...|..|.+.++..+ ..+|+++|..- ..-++++.+
T Consensus 226 nGGtL~LDei~~L~---~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~ 302 (637)
T PRK13765 226 HKGVLFIDEINTLD---LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKG 302 (637)
T ss_pred CCcEEEEeChHhCC---HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhcc
Confidence 45799999999994 447888888886432 23677776631 112223232
Q ss_pred --eEEEecC--C-CHHHHHHHHHHHHHH---c-C-CCCCHHHHHHHHHHc
Q 008751 95 --LEVSFTM--P-MPKDLLSHLQMICAA---E-K-VELQQHLLVQLIESC 134 (555)
Q Consensus 95 --l~I~Fkr--P-s~~eI~srL~~Ic~k---E-g-l~Id~~~L~~Li~~S 134 (555)
..+.|+. + +...+..+++.|+.. + + ..++++.+..|++.+
T Consensus 303 ~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~ 352 (637)
T PRK13765 303 YGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREA 352 (637)
T ss_pred CeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHH
Confidence 3455542 2 356677777777653 2 2 368999999999864
No 228
>PRK07952 DNA replication protein DnaC; Validated
Probab=41.03 E-value=53 Score=33.63 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=43.4
Q ss_pred hHHHhhC---CCceEEEeCCCcccc--ccc---------ccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH---
Q 008751 10 CEAAQHA---DDEVVEVIHIPDDEN--SHG---------VMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--- 72 (555)
Q Consensus 10 ~~iAkel---Gy~VIELNASDdR~r--n~~---------v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--- 72 (555)
+++|+++ |..|+-+.+++=..+ ... ....+ .+..++||||++..... ......|..++..
T Consensus 117 ~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~~s-~~~~~~l~~Ii~~Ry~ 193 (244)
T PRK07952 117 AAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQTES-RYEKVIINQIVDRRSS 193 (244)
T ss_pred HHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCCCC-HHHHHHHHHHHHHHHh
Confidence 4455554 888888887662211 000 00111 24679999999987643 2233355666664
Q ss_pred cCCcEEEEecCC
Q 008751 73 AKGPVILTSNSN 84 (555)
Q Consensus 73 SKrPIILtCND~ 84 (555)
.+.|+|+|+|-.
T Consensus 194 ~~~~tiitSNl~ 205 (244)
T PRK07952 194 SKRPTGMLTNSN 205 (244)
T ss_pred CCCCEEEeCCCC
Confidence 368999999975
No 229
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=40.91 E-value=55 Score=30.52 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=29.7
Q ss_pred CCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
+++++|+||...-++. .+.+..+|.++... .+.+|+++.+..
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~ 142 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPE 142 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH
Confidence 5789999999976653 34455567777655 567888877754
No 230
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=38.75 E-value=29 Score=28.93 Aligned_cols=18 Identities=6% Similarity=0.252 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCCCCcccH
Q 008751 43 VKPLILIEDVDVFFPEDR 60 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDr 60 (555)
...+||+||+|.+.....
T Consensus 103 ~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 103 KLDLLILDEAHRLLNQGF 120 (144)
T ss_pred cCCEEEEeCHHHHhhcch
Confidence 568999999999987643
No 231
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=38.01 E-value=86 Score=36.26 Aligned_cols=88 Identities=14% Similarity=0.231 Sum_probs=54.3
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC-----------------------CcEEEEecCC--CCCCcCcccee--
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK-----------------------GPVILTSNSN--NITLPDSLDRL-- 95 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK-----------------------rPIILtCND~--n~~L~~l~~~l-- 95 (555)
...+++|||+|.|.. ..|..|.++++..+ ..+|+++|.. ...-+++++++
T Consensus 217 ngGtL~Ldei~~L~~---~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~ 293 (608)
T TIGR00764 217 HKGVLYIDEIKTMPL---EVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRG 293 (608)
T ss_pred CCCEEEEEChHhCCH---HHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcC
Confidence 457999999999984 36788888886422 2367777643 22223343433
Q ss_pred ---EEEec--CCC-HH---HHHHHHHHHHHHcC-C-CCCHHHHHHHHHH
Q 008751 96 ---EVSFT--MPM-PK---DLLSHLQMICAAEK-V-ELQQHLLVQLIES 133 (555)
Q Consensus 96 ---~I~Fk--rPs-~~---eI~srL~~Ic~kEg-l-~Id~~~L~~Li~~ 133 (555)
.+.|. .|. .+ .+..++...+.+.| + .++++.+..|++.
T Consensus 294 y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~ 342 (608)
T TIGR00764 294 YGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVRE 342 (608)
T ss_pred CeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 24442 232 33 34566666667774 3 5789999999864
No 232
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=37.96 E-value=29 Score=38.14 Aligned_cols=43 Identities=23% Similarity=0.517 Sum_probs=32.2
Q ss_pred CCCcEEEEeCCCCC-CcccHHHHHHHHHHHHHcCCcEEEEecCC
Q 008751 42 HVKPLILIEDVDVF-FPEDRGFIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 42 ~kkkLILiDEVD~L-f~eDrGf~sAL~~liekSKrPIILtCND~ 84 (555)
....+||+||||.. +..|+-..-|+.+--+.----|+||++..
T Consensus 201 ~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~ 244 (441)
T COG4098 201 QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPT 244 (441)
T ss_pred hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCCh
Confidence 34689999999988 45688788888776665444577887775
No 233
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=37.61 E-value=1.4e+02 Score=32.42 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=60.5
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-------------cCCcEEEEecCCC--CCCc-Cccce--eEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-------------AKGPVILTSNSNN--ITLP-DSLDR--LEVSFTMPM 103 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-------------SKrPIILtCND~n--~~L~-~l~~~--l~I~FkrPs 103 (555)
-...++++||++.+... .+++|.+.++. ...|||++++..- ..++ .++++ +.+.+..|.
T Consensus 143 A~~GiL~lDEInrL~~~---~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~ 219 (350)
T CHL00081 143 ANRGILYVDEVNLLDDH---LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVK 219 (350)
T ss_pred cCCCEEEecChHhCCHH---HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCC
Confidence 34689999999999764 56677777754 1357888886531 1233 24455 456666665
Q ss_pred H-HH---HHHH----------------------HHHHHH----HcCCCCCHHHHHHHHHH---cCC-cHHHHHHHHHH
Q 008751 104 P-KD---LLSH----------------------LQMICA----AEKVELQQHLLVQLIES---CRA-DIRKTIMHLQF 147 (555)
Q Consensus 104 ~-~e---I~sr----------------------L~~Ic~----kEgl~Id~~~L~~Li~~---S~G-DIRqaLN~LQf 147 (555)
. .. |..+ ...|.. -.++.+++.+++.|++. .+. -.|..|..++.
T Consensus 220 ~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~ra 297 (350)
T CHL00081 220 DPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRA 297 (350)
T ss_pred ChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHH
Confidence 3 21 2211 112211 13567888887766543 332 37888877765
No 234
>PRK08116 hypothetical protein; Validated
Probab=37.39 E-value=56 Score=33.61 Aligned_cols=74 Identities=15% Similarity=0.005 Sum_probs=41.2
Q ss_pred hHHHhh---CCCceEEEeCCCcccc--cccc---c----ccCC-CCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH---c
Q 008751 10 CEAAQH---ADDEVVEVIHIPDDEN--SHGV---M----GKSD-NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---A 73 (555)
Q Consensus 10 ~~iAke---lGy~VIELNASDdR~r--n~~v---~----gsl~-~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek---S 73 (555)
+++|++ .|+.|+-+|+++-... .... . ..+. -....|+||||+......+ -.+..|-.++.. .
T Consensus 132 ~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~-~~~~~l~~iin~r~~~ 210 (268)
T PRK08116 132 ACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTE-WAREKVYNIIDSRYRK 210 (268)
T ss_pred HHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCH-HHHHHHHHHHHHHHHC
Confidence 455554 3889999998662111 0000 0 0000 0135799999995432222 234455556553 4
Q ss_pred CCcEEEEecCC
Q 008751 74 KGPVILTSNSN 84 (555)
Q Consensus 74 KrPIILtCND~ 84 (555)
..|+|+|+|-.
T Consensus 211 ~~~~IiTsN~~ 221 (268)
T PRK08116 211 GLPTIVTTNLS 221 (268)
T ss_pred CCCEEEECCCC
Confidence 57999999975
No 235
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=37.14 E-value=2.1e+02 Score=32.36 Aligned_cols=107 Identities=11% Similarity=0.054 Sum_probs=72.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH-------------cCCcEEEEecCCC-------CCCcCccce-eEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK-------------AKGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek-------------SKrPIILtCND~n-------~~L~~l~~~-l~I~Fkr 101 (555)
....+++|||--|.-+ .+.-|.+.++. ..++||.++|-.= ..-.+++-+ .++.+.-
T Consensus 235 ~GGTLfLDEI~~mpl~---~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~i 311 (464)
T COG2204 235 NGGTLFLDEIGEMPLE---LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRL 311 (464)
T ss_pred CCceEEeeccccCCHH---HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecC
Confidence 4578999999999764 45566666653 2345777777631 111122223 3556655
Q ss_pred CCH--------HHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q 008751 102 PMP--------KDLLSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 102 Ps~--------~eI~srL~~Ic~kEgl---~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s~ 152 (555)
|+. .-+..+|...|+..|. .++++.+..|..+. -|++|+--|.++.++.-.
T Consensus 312 PpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 312 PPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 653 3356677788887765 57899999998874 899999999999877654
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=36.40 E-value=41 Score=34.31 Aligned_cols=82 Identities=20% Similarity=0.088 Sum_probs=44.7
Q ss_pred cccccCchhHHHhhCCCceEEEeCCCcccc------cccccccCC--CCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-
Q 008751 2 KSSYTVSLCEAAQHADDEVVEVIHIPDDEN------SHGVMGKSD--NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK- 72 (555)
Q Consensus 2 ~~~~~~~~~~iAkelGy~VIELNASDdR~r------n~~v~gsl~--~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek- 72 (555)
||.=|...+..|...|+.|..+++.+-... .......+. -....++||||++.+...+ .....+-+++..
T Consensus 115 KThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r 193 (259)
T PRK09183 115 KTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKR 193 (259)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHH
Confidence 333344445555668999999987652210 000000010 1245799999998764322 223344555432
Q ss_pred -cCCcEEEEecCC
Q 008751 73 -AKGPVILTSNSN 84 (555)
Q Consensus 73 -SKrPIILtCND~ 84 (555)
-+.++|+|+|-.
T Consensus 194 ~~~~s~iiTsn~~ 206 (259)
T PRK09183 194 YEKGSMILTSNLP 206 (259)
T ss_pred HhcCcEEEecCCC
Confidence 245899998885
No 237
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.92 E-value=24 Score=40.12 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=26.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKG 75 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKr 75 (555)
+=+.+++||||.|+ |.||...|++|+..+.+
T Consensus 239 ~v~ylVLDEADrMl--dmGFe~qI~~Il~~i~~ 269 (519)
T KOG0331|consen 239 RVTYLVLDEADRML--DMGFEPQIRKILSQIPR 269 (519)
T ss_pred ceeEEEeccHHhhh--ccccHHHHHHHHHhcCC
Confidence 55799999999998 56899999999998743
No 238
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=35.27 E-value=32 Score=30.72 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n 85 (555)
+..+||+||+|.+... .+...+..++... ..++|+++..+.
T Consensus 129 ~~~~iIiDE~h~~~~~--~~~~~~~~~~~~~~~~~~~v~~saT~~ 171 (201)
T smart00487 129 NVDLVILDEAHRLLDG--GFGDQLEKLLKLLPKNVQLLLLSATPP 171 (201)
T ss_pred HCCEEEEECHHHHhcC--CcHHHHHHHHHhCCccceEEEEecCCc
Confidence 3469999999999863 2344555555532 455666666553
No 239
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=34.47 E-value=48 Score=30.23 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=25.6
Q ss_pred cEEEEeCCC-CCCcccHHHHHHHHHHHHH---cCCcEEEEecCCC
Q 008751 45 PLILIEDVD-VFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNN 85 (555)
Q Consensus 45 kLILiDEVD-~Lf~eDrGf~sAL~~liek---SKrPIILtCND~n 85 (555)
.+++|||.| +|... .+..|.+++.. .+..||+|+.++.
T Consensus 259 ~illiDEpE~~LHp~---~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 259 SILLIDEPENHLHPS---WQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp SEEEEESSSTTSSHH---HHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eEEEecCCcCCCCHH---HHHHHHHHHHhhCccCCEEEEeCccch
Confidence 899999999 45443 45555555554 2468999998743
No 240
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.33 E-value=1.3e+02 Score=36.41 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=77.0
Q ss_pred chhHHHhhCCCceEEEeCCCcc--cccccc---cccC---CCCCCcEEEEeCCCCCCcc-----cHHHHHHHHHHHH---
Q 008751 8 SLCEAAQHADDEVVEVIHIPDD--ENSHGV---MGKS---DNHVKPLILIEDVDVFFPE-----DRGFIAGIQQIAE--- 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR--~rn~~v---~gsl---~~~kkkLILiDEVD~Lf~e-----DrGf~sAL~~lie--- 71 (555)
.+.++|+++|.+++|+....=- ...+.. ...+ ....+-+|++=..|.+.-+ |.-...+|+.++.
T Consensus 447 ~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~ 526 (953)
T KOG0736|consen 447 VVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNED 526 (953)
T ss_pred HHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhccc
Confidence 3568999999999999875511 100100 0000 1124568888888877542 4445666666665
Q ss_pred -H-cCCcEEEEecCCC-CCCcCccc-e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 008751 72 -K-AKGPVILTSNSNN-ITLPDSLD-R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA 136 (555)
Q Consensus 72 -k-SKrPIILtCND~n-~~L~~l~~-~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G 136 (555)
+ .+.|.|++|+-.+ ..+|..++ + ..|.+..|+.++=...|+.....+.+. .+-.++.++..+.|
T Consensus 527 ~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 527 FKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSG 596 (953)
T ss_pred ccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCC
Confidence 1 3446666666543 34555444 3 789999999999888888887665542 12234445554443
No 241
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=34.20 E-value=97 Score=38.25 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=36.0
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccceeEEEecCCCHHHHHHHHHHHHH
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDRLEVSFTMPMPKDLLSHLQMICA 116 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~~l~I~FkrPs~~eI~srL~~Ic~ 116 (555)
.++-+|++|+||.. .-+.+|...... ....||+|+.+... +....-...+....|+.++-...+...|.
T Consensus 295 ~krvLLVLDdv~~~-----~~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 295 HRKVLIFIDDLDDQ-----DVLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred CCeEEEEEeCCCCH-----HHHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 35679999999743 235555543321 23469999988642 11000013344455555554444444443
No 242
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=34.05 E-value=67 Score=30.98 Aligned_cols=40 Identities=15% Similarity=0.378 Sum_probs=25.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC--CcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK--GPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK--rPIILtCND~ 84 (555)
...++||||||.=.++. -+..+.++++... +-+|+|+-+.
T Consensus 158 ~~p~~ilDEvd~~LD~~--~~~~l~~~l~~~~~~~Q~ii~Th~~ 199 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQ--NRKRLADLLKELSKQSQFIITTHNP 199 (220)
T ss_dssp --SEEEEESTTTTS-HH--HHHHHHHHHHHHTTTSEEEEE-S-H
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 45799999999777643 3566766666544 6799888664
No 243
>PRK06526 transposase; Provisional
Probab=33.64 E-value=79 Score=32.39 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=27.8
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~ 84 (555)
+..++||||++.+... +.....|.+++.. .+.++|+|+|-.
T Consensus 159 ~~dlLIIDD~g~~~~~-~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFE-PEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCC-HHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 4579999999987542 2233455565543 346899999985
No 244
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=33.57 E-value=51 Score=29.79 Aligned_cols=39 Identities=13% Similarity=0.263 Sum_probs=28.6
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~ 84 (555)
+...++|+|+|.+..+ .+..|..+++. .+.++|++|...
T Consensus 69 ~~gtL~l~~i~~L~~~---~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPE---AQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TTSEEEEECGCCS-HH---HHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCCEEEECChHHCCHH---HHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 5679999999999876 45666666664 467899998864
No 245
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=32.42 E-value=1.2e+02 Score=35.20 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek 72 (555)
...++++|||+.|... .+.+|.++++.
T Consensus 126 ~~GiL~lDEi~~l~~~---~q~~Ll~~le~ 152 (633)
T TIGR02442 126 HRGILYIDEVNLLDDH---LVDVLLDAAAM 152 (633)
T ss_pred CCCeEEeChhhhCCHH---HHHHHHHHHhc
Confidence 4579999999999764 57788888875
No 246
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=31.80 E-value=82 Score=31.82 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=28.0
Q ss_pred CCCcEEEEeCCCCCCcccHH---HHHHHHHHHHHcCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPEDRG---FIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrG---f~sAL~~liekSKrPIILtCND~n 85 (555)
.++++|||||.-.-+....| +++.+..+.++.++.+|+++....
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 36789999999977764333 444455555546777888777753
No 247
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.53 E-value=76 Score=36.94 Aligned_cols=143 Identities=17% Similarity=0.118 Sum_probs=82.2
Q ss_pred cCchhHHHhhCCCceEEEeCCCccc----------ccccccccCCCCCCcEEEEeCCCCCCcc----cH-HHHHHHHHHH
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPDDE----------NSHGVMGKSDNHVKPLILIEDVDVFFPE----DR-GFIAGIQQIA 70 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDdR~----------rn~~v~gsl~~~kkkLILiDEVD~Lf~e----Dr-Gf~sAL~~li 70 (555)
++...++|-|.|..++-.-.|.-.+ |.-+... .+..+-+|+|||+|.+-.. |. -....|.+++
T Consensus 351 TlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA--k~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLL 428 (752)
T KOG0734|consen 351 TLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA--KARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLL 428 (752)
T ss_pred hHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHH--HhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHH
Confidence 4677899999999998888877221 1111111 1224679999999988541 32 3445677776
Q ss_pred HH-----cCCcEEEEe--cCCCCCCcC-cc-c-e--eEEEecCCCH----HHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 008751 71 EK-----AKGPVILTS--NSNNITLPD-SL-D-R--LEVSFTMPMP----KDLLSHLQMICAAEKVELQQHLLVQLIE-S 133 (555)
Q Consensus 71 ek-----SKrPIILtC--ND~n~~L~~-l~-~-~--l~I~FkrPs~----~eI~srL~~Ic~kEgl~Id~~~L~~Li~-~ 133 (555)
-. -+-+||+|. |-+. .|-+ +. . + .+|....|.. +-+..||..|-+.|++ |+.+|.+=-- .
T Consensus 429 vEmDGF~qNeGiIvigATNfpe-~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~V--D~~iiARGT~GF 505 (752)
T KOG0734|consen 429 VEMDGFKQNEGIIVIGATNFPE-ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDV--DPKIIARGTPGF 505 (752)
T ss_pred HHhcCcCcCCceEEEeccCChh-hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCC--CHhHhccCCCCC
Confidence 54 244677665 3332 1111 11 1 3 3455566654 3456777777777665 3444433221 2
Q ss_pred cCCcHHHHHHHHHHHhhcCC
Q 008751 134 CRADIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 134 S~GDIRqaLN~LQf~s~s~~ 153 (555)
++.|+--.+|.--.++...+
T Consensus 506 sGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 506 SGADLANLVNQAALKAAVDG 525 (752)
T ss_pred chHHHHHHHHHHHHHHHhcC
Confidence 46688878877766665544
No 248
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=30.47 E-value=2.3e+02 Score=29.94 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCcCccceeEEEecCCCHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHH
Q 008751 62 FIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMPKDLLSHLQMICAAEKV--------ELQQHLLVQLIES 133 (555)
Q Consensus 62 f~sAL~~liekSKrPIILtCND~n~~L~~l~~~l~I~FkrPs~~eI~srL~~Ic~kEgl--------~Id~~~L~~Li~~ 133 (555)
...+|.++.+..+.||++-=+-.. +..++.. +...++...+++..+.......|. .+||.....|
T Consensus 77 a~~~i~~~~~~g~~pi~vGGTg~Y--i~all~g--~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~i--- 149 (287)
T TIGR00174 77 ALNAIADITARGKIPLLVGGTGLY--LKALLEG--LSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKI--- 149 (287)
T ss_pred HHHHHHHHHhCCCCEEEEcCcHHH--HHHHHcC--CCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHhc---
Confidence 344566666677888887655543 1111111 111234456778888876666653 3555544443
Q ss_pred cCCcHHHHHHHHHHHhhcCCC
Q 008751 134 CRADIRKTIMHLQFWCQNKGY 154 (555)
Q Consensus 134 S~GDIRqaLN~LQf~s~s~~~ 154 (555)
..+|.|+.+..|+.+..++..
T Consensus 150 ~~nd~~Ri~RALEi~~~tG~~ 170 (287)
T TIGR00174 150 HPNDTRRVQRALEVFYATGKP 170 (287)
T ss_pred CCccHHHHHHHHHHHHHHCCC
Confidence 579999999999998877643
No 249
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=29.93 E-value=47 Score=31.25 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=25.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~ 84 (555)
.-.+||+||+|.+.+ .++...+..+++.. .+++++++-..
T Consensus 143 ~l~~lIvDE~h~~~~--~~~~~~~~~~~~~l~~~~~~~~~SAT~ 184 (203)
T cd00268 143 KVKYLVLDEADRMLD--MGFEDQIREILKLLPKDRQTLLFSATM 184 (203)
T ss_pred hCCEEEEeChHHhhc--cChHHHHHHHHHhCCcccEEEEEeccC
Confidence 347999999999873 44566666665543 34555555443
No 250
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=29.57 E-value=45 Score=29.71 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=36.9
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-------------cccccccCCC--CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-------------SHGVMGKSDN--HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-------------n~~v~gsl~~--~kkkLILiDEVD~Lf~eDrGf~sAL~~liek 72 (555)
...+|+.+++.++.++.+.+... .....+.+.. .+..+++|||++.... ..+.+|..+++.
T Consensus 16 ~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~---~v~~~L~~ll~~ 91 (139)
T PF07728_consen 16 ARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPP---EVLESLLSLLEE 91 (139)
T ss_dssp HHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--H---HHHHTTHHHHSS
T ss_pred HHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCH---HHHHHHHHHHhh
Confidence 34677788999999998874321 0111122211 1467999999998853 467788887763
No 251
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=29.50 E-value=1.1e+02 Score=29.44 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=34.3
Q ss_pred CCCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCCCCCcCccceeEEEecCCCH
Q 008751 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMP 104 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n~~L~~l~~~l~I~FkrPs~ 104 (555)
.+++++|+||--.-.+- .+.++..|.++.+ ..+.||+++.+... ++. ...+.+.+|+.
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~-~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 144 SNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPLG-LPG---ARELDLGPFAA 203 (207)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCchh-hcc---CcEEeecCccC
Confidence 36799999999844431 2334444444433 25678999888653 222 44556665554
No 252
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=29.27 E-value=72 Score=24.46 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHcCCcHHHHHHHH
Q 008751 123 QQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 123 d~~~L~~Li~~S~GDIRqaLN~L 145 (555)
....|+.+.+.|+||+=|||-++
T Consensus 16 kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 16 KRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred ChHHHHHHHHHcCCcHHHHHHHh
Confidence 46889999999999999998653
No 253
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=29.02 E-value=1.2e+02 Score=32.05 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCcCccceeEEEecCCCHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHc
Q 008751 63 IAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMPKDLLSHLQMICAAEKV--------ELQQHLLVQLIESC 134 (555)
Q Consensus 63 ~sAL~~liekSKrPIILtCND~n~~L~~l~~~l~I~FkrPs~~eI~srL~~Ic~kEgl--------~Id~~~L~~Li~~S 134 (555)
..+|.++.++.+.|||.--+... +..++... ...+|...+++.+|......+|. .+||.....| .
T Consensus 83 ~~~i~~i~~~gk~pIlvGGt~~Y--~~al~~g~--~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i---~ 155 (307)
T PRK00091 83 LAAIADILARGKLPILVGGTGLY--IKALLEGL--SPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARI---H 155 (307)
T ss_pred HHHHHHHHhCCCCEEEECcHHHH--HHHhccCC--CCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhc---C
Confidence 34555666677888886333321 11111111 13456677899999988777663 3445444433 5
Q ss_pred CCcHHHHHHHHHHHhhcCCC
Q 008751 135 RADIRKTIMHLQFWCQNKGY 154 (555)
Q Consensus 135 ~GDIRqaLN~LQf~s~s~~~ 154 (555)
.+|.|+.+..|+.+..++..
T Consensus 156 ~~d~~Ri~RAlEi~~~tG~~ 175 (307)
T PRK00091 156 PNDPQRIIRALEVYELTGKP 175 (307)
T ss_pred CCCCchhHHHHHHHHHHCCC
Confidence 78999999999998877643
No 254
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=28.39 E-value=51 Score=37.55 Aligned_cols=87 Identities=21% Similarity=0.288 Sum_probs=53.3
Q ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCCCCCcCccceeEEEecCCCHHHHHHHHHHHHHHcCCCCC-
Q 008751 45 PLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMPKDLLSHLQMICAAEKVELQ- 123 (555)
Q Consensus 45 kLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n~~L~~l~~~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id- 123 (555)
+++|+||+|.+. |.||...|.++++- +| ..+..+-|..--..++....+.+..++-+.++
T Consensus 232 k~lvlDEADrlL--d~GF~~di~~Ii~~---------------lp--k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~ 292 (543)
T KOG0342|consen 232 KCLVLDEADRLL--DIGFEEDVEQIIKI---------------LP--KQRQTLLFSATQPSKVKDLARGALKRDPVFVNV 292 (543)
T ss_pred ceeEeecchhhh--hcccHHHHHHHHHh---------------cc--ccceeeEeeCCCcHHHHHHHHHhhcCCceEeec
Confidence 699999999997 57999999999952 33 23445566666666776666666666554332
Q ss_pred --------HHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 124 --------QHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 124 --------~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
.+-+++-.-.+..|-| -+..+.|..+.
T Consensus 293 ~d~~~~~The~l~Qgyvv~~~~~~-f~ll~~~LKk~ 327 (543)
T KOG0342|consen 293 DDGGERETHERLEQGYVVAPSDSR-FSLLYTFLKKN 327 (543)
T ss_pred CCCCCcchhhcccceEEeccccch-HHHHHHHHHHh
Confidence 2334443333455656 44444444433
No 255
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=28.36 E-value=92 Score=23.12 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 121 ELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 121 ~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
.++++.|...+..++||+-.+++.|
T Consensus 14 ~~~~~~I~~~L~~~~~~ve~ai~~L 38 (42)
T PF02845_consen 14 DLDREVIEAVLQANNGDVEAAIDAL 38 (42)
T ss_dssp SS-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5789999999999999999999876
No 256
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.26 E-value=94 Score=35.89 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=42.4
Q ss_pred CcEEEEeCCC-CCCcccHHHHHHHHHHHHH--cCCcEEEEecCCC------CCC--cC-ccc-eeEEEecCCCHHHHHHH
Q 008751 44 KPLILIEDVD-VFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNN------ITL--PD-SLD-RLEVSFTMPMPKDLLSH 110 (555)
Q Consensus 44 kkLILiDEVD-~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n------~~L--~~-l~~-~l~I~FkrPs~~eI~sr 110 (555)
.+.+|||||| |+++.-. .+|-+.+++ .++-|+|++--+. .++ .+ ..+ ....+.++.+.. .|
T Consensus 454 ~ptlIFDEVD~GIsG~~A---~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~K~~~~~~T~s~V~~L~~e---eR 527 (557)
T COG0497 454 TPTLIFDEVDTGISGRVA---QAVGKKLRRLSEHHQVLCVTHLPQVAAMADTHFLVEKESEDGRTESRVRPLDKE---ER 527 (557)
T ss_pred CCeEEEecccCCCChHHH---HHHHHHHHHHhcCceEEEEecHHHHHhhhcceEEEEEecCCCceEEeeeeCCHh---HH
Confidence 5699999999 6665422 233333332 3456888876541 110 01 111 234555655554 67
Q ss_pred HHHHHHHc-CCCCCHHHHH
Q 008751 111 LQMICAAE-KVELQQHLLV 128 (555)
Q Consensus 111 L~~Ic~kE-gl~Id~~~L~ 128 (555)
...|+..- |..+++..+.
T Consensus 528 veEiARMl~G~~iT~~a~a 546 (557)
T COG0497 528 VEEIARMLGGSEVTDEALA 546 (557)
T ss_pred HHHHHHHhcCchhhHHHHH
Confidence 77777655 4466665543
No 257
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=28.04 E-value=96 Score=30.00 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=25.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND 83 (555)
...+|||||++..-..-=.++..|..+.+...+.+|+.+-.
T Consensus 95 ~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 95 NYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp S-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred CccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCC
Confidence 57899999999975544445566677766655567776543
No 258
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=27.82 E-value=1.2e+02 Score=29.30 Aligned_cols=44 Identities=9% Similarity=0.287 Sum_probs=29.2
Q ss_pred CCCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.+++++|+||...-.+. .+.+...|.++.+...+-||+++.+..
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 36789999999855542 334455555555444567888888864
No 259
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=27.46 E-value=2.4e+02 Score=31.73 Aligned_cols=100 Identities=16% Similarity=0.299 Sum_probs=63.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecC--CC-CCCcCcccee--EEEecCCCH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNS--NN-ITLPDSLDRL--EVSFTMPMP 104 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND--~n-~~L~~l~~~l--~I~FkrPs~ 104 (555)
...++.+|||..|-+ -.+.+|...+... ...|+|+.+- -. ...+.+++++ .|....|
T Consensus 144 nRGIlYvDEvnlL~d---~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~-- 218 (423)
T COG1239 144 NRGILYVDEVNLLDD---HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYP-- 218 (423)
T ss_pred cCCEEEEeccccccH---HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCC--
Confidence 468999999999954 3677777777652 2346666544 32 3445566774 5555444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH-HHHHHHHH
Q 008751 105 KDLLSHLQMICAAEKVELQQHLLVQLIESCRADIR-KTIMHLQF 147 (555)
Q Consensus 105 ~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIR-qaLN~LQf 147 (555)
.++..+..-|-..+.+..+|+.+-+.+......+| ++++..+.
T Consensus 219 ~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~ 262 (423)
T COG1239 219 LDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSL 262 (423)
T ss_pred CCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666666566667777777777778888 44444333
No 260
>PTZ00110 helicase; Provisional
Probab=27.19 E-value=50 Score=37.30 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA 73 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS 73 (555)
+-++|||||||.|++ .||...+.+++...
T Consensus 277 ~v~~lViDEAd~mld--~gf~~~i~~il~~~ 305 (545)
T PTZ00110 277 RVTYLVLDEADRMLD--MGFEPQIRKIVSQI 305 (545)
T ss_pred hCcEEEeehHHhhhh--cchHHHHHHHHHhC
Confidence 457999999999985 57888888888653
No 261
>PRK04841 transcriptional regulator MalT; Provisional
Probab=25.87 E-value=3.4e+02 Score=31.73 Aligned_cols=94 Identities=6% Similarity=0.013 Sum_probs=59.3
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCC-CCcCcc-ce--eEEEec--CCCHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNI-TLPDSL-DR--LEVSFT--MPMPKDLLSHLQMI 114 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~-~L~~l~-~~--l~I~Fk--rPs~~eI~srL~~I 114 (555)
.+-+|++||++.+.+ ......|..+++.. ..-+|+++....+ .+.++. .. ..|.-. +-+..++...+..+
T Consensus 121 ~~~~lvlDD~h~~~~--~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~ 198 (903)
T PRK04841 121 QPLYLVIDDYHLITN--PEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR 198 (903)
T ss_pred CCEEEEEeCcCcCCC--hHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc
Confidence 567999999999843 33445666777652 3346566554221 121222 11 233332 55778887777544
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCcHHHH
Q 008751 115 CAAEKVELQQHLLVQLIESCRADIRKT 141 (555)
Q Consensus 115 c~kEgl~Id~~~L~~Li~~S~GDIRqa 141 (555)
-|..++++.+..|.+.+.|-.--.
T Consensus 199 ---~~~~~~~~~~~~l~~~t~Gwp~~l 222 (903)
T PRK04841 199 ---LSSPIEAAESSRLCDDVEGWATAL 222 (903)
T ss_pred ---cCCCCCHHHHHHHHHHhCChHHHH
Confidence 377899999999999999987543
No 262
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=25.51 E-value=1.1e+02 Score=22.63 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 121 ELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 121 ~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
.++...|...+..++||+-.+++.|
T Consensus 15 ~l~~~~I~~~L~~~~g~ve~~i~~L 39 (43)
T smart00546 15 NLDEEVIKAVLEANNGNVEATINNL 39 (43)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5788999999999999999999876
No 263
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=25.43 E-value=1.4e+02 Score=28.59 Aligned_cols=43 Identities=7% Similarity=0.124 Sum_probs=28.2
Q ss_pred CCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
+++++|+||--.-.+. .+.++..|.++.++..+.||+++.+..
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 6789999999855542 223444455554444567999998864
No 264
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=25.41 E-value=1e+02 Score=32.58 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH---------------cCCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---------------AKGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek---------------SKrPIILtCND~ 84 (555)
.+.++.|||.|.|.++| ..+|.+.|++ +++.|+.+||-.
T Consensus 121 d~GiccIDe~dk~~~~~---~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~ 174 (331)
T PF00493_consen 121 DGGICCIDEFDKMKEDD---RDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPK 174 (331)
T ss_dssp TTSEEEECTTTT--CHH---HHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--T
T ss_pred cCceeeecccccccchH---HHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhh
Confidence 56899999999998876 4677778884 467799999875
No 265
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.38 E-value=1.3e+02 Score=32.47 Aligned_cols=141 Identities=18% Similarity=0.238 Sum_probs=80.2
Q ss_pred cCchhHHHhhCCCceEEEeCCCcccc----------cccccccCCCCCCcEEEEeCCCCCC----c----ccHHHHHHHH
Q 008751 6 TVSLCEAAQHADDEVVEVIHIPDDEN----------SHGVMGKSDNHVKPLILIEDVDVFF----P----EDRGFIAGIQ 67 (555)
Q Consensus 6 ~~~~~~iAkelGy~VIELNASDdR~r----------n~~v~gsl~~~kkkLILiDEVD~Lf----~----eDrGf~sAL~ 67 (555)
++...++|+-.+.-+|-+-.|.-..+ .-+.+. ...+--+|+|||+|.+- + +|.--++.+.
T Consensus 225 tl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma--rtkkaciiffdeidaiggarfddg~ggdnevqrtml 302 (435)
T KOG0729|consen 225 TLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA--RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTML 302 (435)
T ss_pred hHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh--cccceEEEEeeccccccCccccCCCCCcHHHHHHHH
Confidence 34556788888888888777761110 111111 11133478899999873 2 2445667777
Q ss_pred HHHHH-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHH-HHHcCC--CCCHHHHHHHHHH
Q 008751 68 QIAEK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMI-CAAEKV--ELQQHLLVQLIES 133 (555)
Q Consensus 68 ~liek-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~I-c~kEgl--~Id~~~L~~Li~~ 133 (555)
+++.. .++.+.+.+|.++..-|.++. + ..+.|..|..+ =+.++..| ++...+ .|--++|.+|+-.
T Consensus 303 eli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdle-grt~i~kihaksmsverdir~ellarlcpn 381 (435)
T KOG0729|consen 303 ELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE-GRTHIFKIHAKSMSVERDIRFELLARLCPN 381 (435)
T ss_pred HHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccc-ccceeEEEeccccccccchhHHHHHhhCCC
Confidence 77775 456788999988643333332 2 57889888753 33333334 222222 2223455555443
Q ss_pred -cCCcHHHHHHHHHHHh
Q 008751 134 -CRADIRKTIMHLQFWC 149 (555)
Q Consensus 134 -S~GDIRqaLN~LQf~s 149 (555)
++.+||..-..--.++
T Consensus 382 stgaeirsvcteagmfa 398 (435)
T KOG0729|consen 382 STGAEIRSVCTEAGMFA 398 (435)
T ss_pred CcchHHHHHHHHhhHHH
Confidence 4668887765554443
No 266
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.28 E-value=1.4e+02 Score=29.28 Aligned_cols=44 Identities=2% Similarity=0.126 Sum_probs=29.0
Q ss_pred CCCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.+++++|+||...=.+. .+.++..|.++.++..+-||+++.+..
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 36799999999855542 334555555555433457888888864
No 267
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=24.51 E-value=1.5e+02 Score=28.45 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=28.1
Q ss_pred CCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
+++++|+||.+.-.+. .+.+...|.++.+. .+.||+++.+..
T Consensus 116 ~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~ 159 (178)
T cd03239 116 PSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKE 159 (178)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 5789999999966653 33444555555433 356888888754
No 268
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.97 E-value=51 Score=37.55 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=26.1
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHc----CCcEEEEe
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA----KGPVILTS 81 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekS----KrPIILtC 81 (555)
-++|||||+|.|++ .||...+..+++.. .+.+|+.+
T Consensus 160 v~~lViDEAh~lld--~gf~~~i~~il~~lp~~~~~q~ll~S 199 (572)
T PRK04537 160 CEICVLDEADRMFD--LGFIKDIRFLLRRMPERGTRQTLLFS 199 (572)
T ss_pred eeeeEecCHHHHhh--cchHHHHHHHHHhcccccCceEEEEe
Confidence 36799999999874 67888888877653 34566554
No 269
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=23.48 E-value=1.1e+02 Score=38.10 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=34.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~ 84 (555)
..+++||||||..-..+.|++..+.+++....+||||.+-..
T Consensus 593 a~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATL 634 (1110)
T TIGR02562 593 MSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATL 634 (1110)
T ss_pred cCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 468999999999988788888888888888889998877543
No 270
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=23.45 E-value=4.5e+02 Score=30.52 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=63.6
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC----CCCcC-ccce--eEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN----ITLPD-SLDR--LEVSFTMP 102 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n----~~L~~-l~~~--l~I~FkrP 102 (555)
...++++||+..+. ...+.+|.+-|+.. -.||++++.+.. ..++. ++++ +.|....|
T Consensus 93 h~GvL~lDe~n~~~---~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 93 DGGVLVLAMAERLE---PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred cCCEEEecCcccCC---HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 35799999999884 45888999988852 257899996421 12444 5676 45666666
Q ss_pred CHHHHH------HHHHHHH-HHcCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHH
Q 008751 103 MPKDLL------SHLQMIC-AAEKVELQQHLLVQLIESC---RA-DIRKTIMHLQF 147 (555)
Q Consensus 103 s~~eI~------srL~~Ic-~kEgl~Id~~~L~~Li~~S---~G-DIRqaLN~LQf 147 (555)
+..+.. .++...- .-.++.+++..++.++..+ +- -.|..+-.+..
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llra 225 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRA 225 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 654332 1111111 1147899999999876532 21 34777766664
No 271
>PRK09694 helicase Cas3; Provisional
Probab=23.13 E-value=1e+02 Score=37.31 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=26.6
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND 83 (555)
..++||||||+..-.--.++..++.+.+.....|+|+.+=.
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSAT 479 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSAT 479 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 46899999999984322234444445555566787776544
No 272
>PTZ00424 helicase 45; Provisional
Probab=22.70 E-value=63 Score=33.97 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=27.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
+-++||+||+|.+.+ +|+...+..+++.. +.++|+.+..
T Consensus 170 ~i~lvViDEah~~~~--~~~~~~~~~i~~~~~~~~~~i~~SAT 210 (401)
T PTZ00424 170 DLKLFILDEADEMLS--RGFKGQIYDVFKKLPPDVQVALFSAT 210 (401)
T ss_pred cccEEEEecHHHHHh--cchHHHHHHHHhhCCCCcEEEEEEec
Confidence 457999999998874 45666777766553 3456666554
No 273
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=22.68 E-value=1.8e+02 Score=28.27 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=30.3
Q ss_pred CCCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.+++++|+||--.-.+. ...+...|.++.+...+.||+++.+.+
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 36799999999866542 334455555555434678999998865
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=22.46 E-value=83 Score=33.17 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=41.5
Q ss_pred chhHHHhhC---CCceEEEeCCCccc--ccccccccC----C-CCCCcEEEEeCCCCCCcccHHHHHHH-HHHHH---Hc
Q 008751 8 SLCEAAQHA---DDEVVEVIHIPDDE--NSHGVMGKS----D-NHVKPLILIEDVDVFFPEDRGFIAGI-QQIAE---KA 73 (555)
Q Consensus 8 ~~~~iAkel---Gy~VIELNASDdR~--rn~~v~gsl----~-~~kkkLILiDEVD~Lf~eDrGf~sAL-~~lie---kS 73 (555)
..+++|+++ |+.|.-+.+.+=.. +.....++. . -.+-.|+||||+..-.-.+- .+..| ..++. ..
T Consensus 172 La~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~-~~~~ll~~Il~~R~~~ 250 (306)
T PRK08939 172 LLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSW-VRDEVLGVILQYRMQE 250 (306)
T ss_pred HHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHH-HHHHHHHHHHHHHHHC
Confidence 345566655 89999888876211 111111111 0 12467999999975533221 11123 22333 24
Q ss_pred CCcEEEEecCC
Q 008751 74 KGPVILTSNSN 84 (555)
Q Consensus 74 KrPIILtCND~ 84 (555)
+.|+|+|+|-.
T Consensus 251 ~~~ti~TSNl~ 261 (306)
T PRK08939 251 ELPTFFTSNFD 261 (306)
T ss_pred CCeEEEECCCC
Confidence 67999999974
No 275
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=22.45 E-value=66 Score=34.60 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=22.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA 73 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS 73 (555)
.-++||+||||.|++ .||...+..+++..
T Consensus 157 ~v~~lViDEad~l~~--~~f~~~i~~i~~~~ 185 (423)
T PRK04837 157 AIQVVVLDEADRMFD--LGFIKDIRWLFRRM 185 (423)
T ss_pred cccEEEEecHHHHhh--cccHHHHHHHHHhC
Confidence 457999999999975 57888888877653
No 276
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=22.37 E-value=60 Score=36.32 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=26.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-CCcEEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-KGPVILTS 81 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-KrPIILtC 81 (555)
+-++|||||||.|++ .||...+.+++... +..+|+.+
T Consensus 270 ~v~~lViDEad~ml~--~gf~~~i~~i~~~l~~~q~l~~S 307 (518)
T PLN00206 270 NVSVLVLDEVDCMLE--RGFRDQVMQIFQALSQPQVLLFS 307 (518)
T ss_pred heeEEEeecHHHHhh--cchHHHHHHHHHhCCCCcEEEEE
Confidence 347999999999974 67888888877653 33444443
No 277
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=22.17 E-value=1e+02 Score=29.49 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=28.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND 83 (555)
....++|||||.|... .+..|.++++.. .++||++++.
T Consensus 93 ~~GtL~Ld~I~~L~~~---~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 93 NGGTLFLDEIEDLPPE---LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp TTSEEEEETGGGS-HH---HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cceEEeecchhhhHHH---HHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 5689999999999765 678888888852 4567777765
No 278
>PRK04296 thymidine kinase; Provisional
Probab=21.94 E-value=1.4e+02 Score=28.77 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=28.3
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n 85 (555)
+..+|++||+.-+..++ +..+.+.++....++|++.-+.+
T Consensus 78 ~~dvviIDEaq~l~~~~---v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQ---VVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHH---HHHHHHHHHHcCCeEEEEecCcc
Confidence 56799999997664431 44566666667888999987743
No 279
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=21.90 E-value=2.2e+02 Score=26.12 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.+++++|+||-..-. |...+..+.++++..++.||+++.+..
T Consensus 87 ~~p~illlDEP~~~L--D~~~~~~l~~~l~~~~~til~~th~~~ 128 (144)
T cd03221 87 ENPNLLLLDEPTNHL--DLESIEALEEALKEYPGTVILVSHDRY 128 (144)
T ss_pred cCCCEEEEeCCccCC--CHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 367899999998544 444556666666655667888887754
No 280
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=21.81 E-value=2e+02 Score=26.88 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=30.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n 85 (555)
+++++|+||--.-.+ ...+..+.+++......||+++.+..
T Consensus 109 ~p~~lllDEPt~~LD--~~~~~~l~~~l~~~~~tiiivsh~~~ 149 (166)
T cd03223 109 KPKFVFLDEATSALD--EESEDRLYQLLKELGITVISVGHRPS 149 (166)
T ss_pred CCCEEEEECCccccC--HHHHHHHHHHHHHhCCEEEEEeCChh
Confidence 679999999985554 34556666666665667999998864
No 281
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=21.70 E-value=1.4e+02 Score=31.36 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=28.9
Q ss_pred CCcEEEEeCCCCCC-ccc---HHHHHHHHHHHHHcCCcEEEEecCCCC
Q 008751 43 VKPLILIEDVDVFF-PED---RGFIAGIQQIAEKAKGPVILTSNSNNI 86 (555)
Q Consensus 43 kkkLILiDEVD~Lf-~eD---rGf~sAL~~liekSKrPIILtCND~n~ 86 (555)
+++.+||| +||.. .+. .|...+|.++-+ .+.|+||++|...+
T Consensus 7 ~y~~~l~D-lDGvl~~G~~~ipga~e~l~~L~~-~g~~~iflTNn~~~ 52 (269)
T COG0647 7 KYDGFLFD-LDGVLYRGNEAIPGAAEALKRLKA-AGKPVIFLTNNSTR 52 (269)
T ss_pred hcCEEEEc-CcCceEeCCccCchHHHHHHHHHH-cCCeEEEEeCCCCC
Confidence 56789998 99764 333 345555555554 46799999999663
No 282
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=21.56 E-value=67 Score=34.57 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA 73 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS 73 (555)
.-.+|||||+|.|.+ .||...+..+....
T Consensus 147 ~v~~lViDEah~~l~--~~~~~~~~~i~~~~ 175 (434)
T PRK11192 147 AVETLILDEADRMLD--MGFAQDIETIAAET 175 (434)
T ss_pred cCCEEEEECHHHHhC--CCcHHHHHHHHHhC
Confidence 347899999998874 56777777777654
No 283
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=21.28 E-value=67 Score=37.80 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=35.2
Q ss_pred CcEEEEeCCCCCCcc-cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 44 KPLILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 44 kkLILiDEVD~Lf~e-DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.+++||||++.+-++ .-++..++..++.....|||+++-...
T Consensus 339 ~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP 381 (733)
T COG1203 339 TSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLP 381 (733)
T ss_pred hhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 579999999999887 778888888888888899998876644
No 284
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.00 E-value=1.9e+02 Score=27.37 Aligned_cols=42 Identities=7% Similarity=0.211 Sum_probs=26.4
Q ss_pred CCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.++++|+||--.-.+. .+.++..|.++.+ ..+.||+++.+..
T Consensus 145 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~ 188 (190)
T TIGR01166 145 RPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVD 188 (190)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeeccc
Confidence 6799999999755432 2234444444433 2468999988754
No 285
>PRK06921 hypothetical protein; Provisional
Probab=20.99 E-value=1.6e+02 Score=30.37 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=39.2
Q ss_pred hHHHhhC----CCceEEEeCCCcccc--ccc-----ccccCCCCCCcEEEEeCCCC-CCc-c--cHHHHHHHHHHHHH--
Q 008751 10 CEAAQHA----DDEVVEVIHIPDDEN--SHG-----VMGKSDNHVKPLILIEDVDV-FFP-E--DRGFIAGIQQIAEK-- 72 (555)
Q Consensus 10 ~~iAkel----Gy~VIELNASDdR~r--n~~-----v~gsl~~~kkkLILiDEVD~-Lf~-e--DrGf~sAL~~liek-- 72 (555)
+++|+++ |+.|+-+.+.+-... ... ....+ .+-.|+||||++. +.. + ..-....|-.++..
T Consensus 135 ~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~--~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~ 212 (266)
T PRK06921 135 TAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRM--KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRY 212 (266)
T ss_pred HHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHH
Confidence 4455543 888999988662211 000 00111 2457999999943 111 0 11112345555553
Q ss_pred -cCCcEEEEecCC
Q 008751 73 -AKGPVILTSNSN 84 (555)
Q Consensus 73 -SKrPIILtCND~ 84 (555)
.+.|+|+++|-.
T Consensus 213 ~~~k~tIitsn~~ 225 (266)
T PRK06921 213 LNHKPILISSELT 225 (266)
T ss_pred HCCCCEEEECCCC
Confidence 357999999974
No 286
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=20.91 E-value=67 Score=35.16 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek 72 (555)
+-++|||||||.|++ .||...+..++..
T Consensus 149 ~v~~lViDEah~ll~--~~~~~~i~~il~~ 176 (456)
T PRK10590 149 QVEILVLDEADRMLD--MGFIHDIRRVLAK 176 (456)
T ss_pred cceEEEeecHHHHhc--cccHHHHHHHHHh
Confidence 457999999999875 5688888887765
No 287
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=20.82 E-value=2.3e+02 Score=25.42 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcC----------CCCCHHHHHHHHHHcCCcH-HHHHHHHHHHhhcCCC
Q 008751 106 DLLSHLQMICAAEK----------VELQQHLLVQLIESCRADI-RKTIMHLQFWCQNKGY 154 (555)
Q Consensus 106 eI~srL~~Ic~kEg----------l~Id~~~L~~Li~~S~GDI-RqaLN~LQf~s~s~~~ 154 (555)
.+..||..|+..-+ +.+++..|+.|-..+.+|. -|+.-+|+.|....|.
T Consensus 6 dl~~~l~~Ia~~~~~~~wK~faR~lglse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~G~ 65 (97)
T cd08316 6 DLSKHIPDIADVMTLKDVKKFVRKSGLSEPKIDEIKLDNPQDTAEQKVQLLRAWYQSHGK 65 (97)
T ss_pred cHHHhhHHHHHHcCHHHHHHHHHHcCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHHhCC
Confidence 44555555554333 4688999999999998887 5888999999998664
No 288
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.75 E-value=2e+02 Score=27.54 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=27.6
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~n 85 (555)
.+++++|+||-..-. |...+..+.++++. ....||+++.+..
T Consensus 146 ~~p~llllDEPt~~L--D~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 146 TRAPLWILDEPFTAI--DKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred cCCCEEEEeCCCccC--CHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 367999999997443 44445555554443 2467999988865
No 289
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.70 E-value=2e+02 Score=27.61 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=27.4
Q ss_pred CCCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.+++++|+||--.-.+. ...++..|.++.+...+-||+++.+..
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 190 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 36799999999855532 223444444444333456888888764
No 290
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=20.66 E-value=68 Score=34.89 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA 73 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS 73 (555)
.-++|||||+|.|.+ .||...+..++...
T Consensus 147 ~l~~lViDEad~~l~--~g~~~~l~~i~~~~ 175 (460)
T PRK11776 147 ALNTLVLDEADRMLD--MGFQDAIDAIIRQA 175 (460)
T ss_pred HCCEEEEECHHHHhC--cCcHHHHHHHHHhC
Confidence 347999999999874 57888888887653
No 291
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=20.65 E-value=2e+02 Score=27.41 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=27.2
Q ss_pred CCCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.+++++|+||--.-.+. .+.++..|.++.+. ...||+++.+..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 195 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPE 195 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 36799999999865542 23344444444332 457888888864
No 292
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=20.47 E-value=2.1e+02 Score=26.72 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=26.2
Q ss_pred CCCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.+++++|+||--.-.+. .+.++..|.++.+. ..-||+++.+..
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~ 143 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLD 143 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 36799999999744432 23344444444332 456888887754
No 293
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=20.35 E-value=1.8e+02 Score=25.27 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=22.5
Q ss_pred CCcEEEEeCCCCCCcc-cHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE-DRGFIAGIQQIAEK 72 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e-DrGf~sAL~~liek 72 (555)
.+.++++||+.....+ +......+.+++..
T Consensus 49 ~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 49 GQPVVIIDDFGQDNDGYNYSDESELIRLISS 79 (107)
T ss_pred CCcEEEEeecCccccccchHHHHHHHHHHhc
Confidence 4689999999988765 23367778888764
No 294
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.13 E-value=1.9e+02 Score=29.68 Aligned_cols=43 Identities=5% Similarity=0.140 Sum_probs=28.9
Q ss_pred CCcEEEEeCCCCCCcc--cHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e--DrGf~sAL~~liekSKrPIILtCND~n 85 (555)
+++++|+||.-.-.+. .+.++..|.++.+.....||+++.+..
T Consensus 163 ~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6799999999865542 233444455554443567999998865
Done!