Query 008751
Match_columns 555
No_of_seqs 170 out of 1086
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_A Activator 1 95 kDa subu 99.7 4.2E-17 1.4E-21 174.5 12.3 200 9-209 94-327 (516)
2 3u61_B DNA polymerase accessor 99.4 8.9E-13 3.1E-17 130.6 11.4 137 9-149 65-220 (324)
3 1sxj_E Activator 1 40 kDa subu 99.2 5E-11 1.7E-15 118.7 11.2 107 43-152 134-244 (354)
4 2chq_A Replication factor C sm 99.2 3.5E-11 1.2E-15 116.9 7.4 138 11-151 57-210 (319)
5 1sxj_C Activator 1 40 kDa subu 99.1 1.2E-10 4.1E-15 116.9 9.7 131 18-151 77-218 (340)
6 1sxj_B Activator 1 37 kDa subu 99.1 1.8E-10 6.2E-15 112.0 10.1 132 17-151 72-215 (323)
7 1iqp_A RFCS; clamp loader, ext 99.1 1.2E-10 4E-15 113.6 7.5 131 18-151 77-218 (327)
8 1jr3_D DNA polymerase III, del 98.9 1.2E-09 4E-14 109.6 7.1 128 19-150 51-190 (343)
9 2chg_A Replication factor C sm 98.9 1.1E-08 3.6E-13 92.5 12.7 133 17-152 68-211 (226)
10 1sxj_D Activator 1 41 kDa subu 98.9 3.1E-09 1.1E-13 105.0 9.8 106 43-151 133-241 (353)
11 1jr3_A DNA polymerase III subu 98.8 2.4E-08 8.1E-13 99.5 13.5 129 18-150 88-226 (373)
12 1a5t_A Delta prime, HOLB; zinc 98.8 5.9E-09 2E-13 105.2 9.2 122 17-147 73-207 (334)
13 2gno_A DNA polymerase III, gam 98.8 2.7E-09 9.4E-14 107.8 6.2 117 17-147 49-175 (305)
14 3bos_A Putative DNA replicatio 98.8 8E-08 2.8E-12 88.8 13.0 133 15-150 78-222 (242)
15 1njg_A DNA polymerase III subu 98.7 1.3E-07 4.4E-12 86.0 11.0 106 42-150 125-233 (250)
16 3pvs_A Replication-associated 98.6 7.7E-08 2.7E-12 102.1 9.3 141 9-152 67-222 (447)
17 3pfi_A Holliday junction ATP-d 98.5 4.7E-07 1.6E-11 89.8 11.1 136 9-148 72-230 (338)
18 1hqc_A RUVB; extended AAA-ATPa 98.5 1.6E-06 5.4E-11 85.0 14.3 138 9-150 55-216 (324)
19 3uk6_A RUVB-like 2; hexameric 98.5 5E-07 1.7E-11 90.3 10.6 104 44-150 190-308 (368)
20 2c9o_A RUVB-like 1; hexameric 98.4 4.1E-07 1.4E-11 95.8 8.3 101 45-148 297-413 (456)
21 3vfd_A Spastin; ATPase, microt 98.3 1.3E-06 4.5E-11 89.6 9.2 142 8-149 164-329 (389)
22 3syl_A Protein CBBX; photosynt 98.2 7.1E-07 2.4E-11 87.1 5.1 132 19-150 101-260 (309)
23 1ofh_A ATP-dependent HSL prote 98.1 1E-05 3.5E-10 78.2 9.5 141 9-149 67-270 (310)
24 1fnn_A CDC6P, cell division co 98.1 9.9E-06 3.4E-10 80.6 9.2 105 43-150 125-252 (389)
25 2v1u_A Cell division control p 98.0 5E-06 1.7E-10 82.3 5.7 108 43-150 130-254 (387)
26 2z4s_A Chromosomal replication 98.0 1.2E-05 4E-10 84.8 8.1 140 10-150 148-311 (440)
27 2qby_B CDC6 homolog 3, cell di 98.0 6.1E-06 2.1E-10 82.4 5.6 103 46-150 136-250 (384)
28 3b9p_A CG5977-PA, isoform A; A 98.0 2.1E-05 7.2E-10 76.6 9.2 138 9-146 71-233 (297)
29 1l8q_A Chromosomal replication 97.9 0.00011 3.7E-09 72.9 12.5 139 10-151 55-214 (324)
30 2qp9_X Vacuolar protein sortin 97.9 1.8E-05 6.1E-10 80.8 6.9 143 8-150 100-269 (355)
31 3d8b_A Fidgetin-like protein 1 97.8 2E-05 6.8E-10 80.3 6.8 136 8-143 133-296 (357)
32 3te6_A Regulatory protein SIR3 97.7 0.0003 1E-08 72.0 12.8 103 43-150 132-284 (318)
33 2qby_A CDC6 homolog 1, cell di 97.7 3.7E-05 1.3E-09 75.9 5.4 108 43-150 128-250 (386)
34 3h4m_A Proteasome-activating n 97.6 6.5E-05 2.2E-09 72.5 6.6 145 8-153 67-242 (285)
35 3eie_A Vacuolar protein sortin 97.6 3.2E-05 1.1E-09 77.3 4.5 140 8-147 67-233 (322)
36 1d2n_A N-ethylmaleimide-sensit 97.6 3.7E-05 1.3E-09 74.4 3.6 138 9-151 81-248 (272)
37 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00038 1.3E-08 65.9 9.7 141 9-149 56-229 (262)
38 2zan_A Vacuolar protein sortin 97.4 0.00013 4.6E-09 76.7 6.5 140 8-147 183-350 (444)
39 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.00051 1.8E-08 69.1 9.5 139 8-146 61-227 (322)
40 3t15_A Ribulose bisphosphate c 97.3 0.00033 1.1E-08 69.5 6.9 130 8-139 52-221 (293)
41 1in4_A RUVB, holliday junction 97.3 0.0013 4.5E-08 66.2 11.0 136 9-148 68-226 (334)
42 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00051 1.7E-08 76.3 6.5 137 9-149 505-712 (758)
43 1ojl_A Transcriptional regulat 97.1 0.0018 6.1E-08 64.8 9.8 105 44-151 97-234 (304)
44 2bjv_A PSP operon transcriptio 97.1 0.0019 6.4E-08 62.0 9.3 105 43-150 100-238 (265)
45 4fcw_A Chaperone protein CLPB; 97.0 0.00071 2.4E-08 65.8 5.5 104 44-150 120-276 (311)
46 1g8p_A Magnesium-chelatase 38 96.9 0.0024 8.1E-08 63.0 8.9 103 44-149 145-299 (350)
47 1um8_A ATP-dependent CLP prote 96.9 0.0012 4E-08 67.0 6.7 143 9-151 89-338 (376)
48 4b4t_L 26S protease subunit RP 96.8 0.0028 9.4E-08 67.7 9.0 143 7-150 230-403 (437)
49 4b4t_J 26S protease regulatory 96.8 0.0024 8.1E-08 67.7 8.2 142 7-150 197-370 (405)
50 1w5s_A Origin recognition comp 96.8 0.0019 6.4E-08 64.9 6.8 106 43-148 138-269 (412)
51 3cf0_A Transitional endoplasmi 96.6 0.00067 2.3E-08 67.2 2.3 144 8-151 65-238 (301)
52 3pxi_A Negative regulator of g 96.5 0.0048 1.6E-07 68.8 8.8 134 10-146 539-718 (758)
53 3m6a_A ATP-dependent protease 96.4 0.0023 7.9E-08 69.3 5.2 142 9-150 125-313 (543)
54 4b4t_M 26S protease regulatory 96.4 0.011 3.8E-07 63.0 10.2 141 7-149 230-402 (434)
55 2r44_A Uncharacterized protein 96.4 0.023 7.8E-07 56.2 11.6 134 9-148 63-273 (331)
56 4b4t_I 26S protease regulatory 96.3 0.006 2.1E-07 65.3 7.8 143 7-151 231-405 (437)
57 1lv7_A FTSH; alpha/beta domain 96.3 0.0076 2.6E-07 57.5 7.4 141 9-151 62-234 (257)
58 4b4t_H 26S protease regulatory 96.3 0.015 5.1E-07 62.7 10.4 141 7-149 258-430 (467)
59 2r62_A Cell division protease 96.0 0.00051 1.8E-08 65.8 -2.3 142 9-151 61-235 (268)
60 4b4t_K 26S protease regulatory 95.9 0.0065 2.2E-07 64.6 5.5 142 7-150 221-395 (428)
61 3hu3_A Transitional endoplasmi 95.7 0.0039 1.3E-07 67.0 2.9 137 8-145 254-414 (489)
62 1qvr_A CLPB protein; coiled co 95.7 0.038 1.3E-06 62.6 10.8 134 17-150 226-390 (854)
63 3hws_A ATP-dependent CLP prote 95.5 0.0082 2.8E-07 60.6 4.1 143 8-150 67-320 (363)
64 1qvr_A CLPB protein; coiled co 95.3 0.0083 2.9E-07 68.0 3.8 139 9-150 605-817 (854)
65 3cf2_A TER ATPase, transitiona 95.1 0.013 4.5E-07 66.9 4.4 137 7-145 253-418 (806)
66 2qen_A Walker-type ATPase; unk 95.1 0.2 6.9E-06 48.5 12.2 99 44-142 129-243 (350)
67 2ce7_A Cell division protein F 95.0 0.062 2.1E-06 57.8 9.2 142 8-151 65-238 (476)
68 1jbk_A CLPB protein; beta barr 94.8 0.0055 1.9E-07 53.6 0.3 69 43-111 115-194 (195)
69 1u0j_A DNA replication protein 94.5 0.049 1.7E-06 54.7 6.3 102 10-124 122-259 (267)
70 3dzd_A Transcriptional regulat 94.4 0.21 7.3E-06 51.2 10.9 106 43-151 222-360 (368)
71 1r6b_X CLPA protein; AAA+, N-t 94.2 0.073 2.5E-06 59.0 7.6 107 43-149 278-406 (758)
72 3pxg_A Negative regulator of g 93.3 0.037 1.2E-06 58.6 3.0 127 17-150 236-383 (468)
73 2dhr_A FTSH; AAA+ protein, hex 92.6 0.26 8.7E-06 53.3 8.2 141 8-150 80-252 (499)
74 1ny5_A Transcriptional regulat 92.5 0.64 2.2E-05 47.9 10.8 105 44-151 232-369 (387)
75 3k1j_A LON protease, ATP-depen 92.3 0.16 5.3E-06 55.5 6.3 103 43-148 201-351 (604)
76 2fna_A Conserved hypothetical 89.9 1.3 4.5E-05 42.8 9.5 101 44-146 138-251 (357)
77 2kjq_A DNAA-related protein; s 88.9 1.4 4.7E-05 39.4 8.2 61 16-84 63-125 (149)
78 2p65_A Hypothetical protein PF 88.6 0.13 4.5E-06 44.9 1.2 61 43-103 115-187 (187)
79 3pxi_A Negative regulator of g 88.5 0.27 9.3E-06 54.8 4.0 126 17-149 236-382 (758)
80 1ixz_A ATP-dependent metallopr 88.1 1.3 4.6E-05 41.7 8.1 141 9-151 66-238 (254)
81 1tue_A Replication protein E1; 86.7 0.51 1.7E-05 46.1 4.2 83 10-104 76-181 (212)
82 1ypw_A Transitional endoplasmi 86.2 0.48 1.6E-05 53.8 4.4 135 8-143 254-412 (806)
83 3co5_A Putative two-component 86.2 0.28 9.7E-06 43.0 2.0 68 11-84 46-116 (143)
84 1iy2_A ATP-dependent metallopr 85.1 1.6 5.6E-05 42.0 7.0 140 9-150 90-261 (278)
85 1ye8_A Protein THEP1, hypothet 84.0 0.88 3E-05 41.9 4.3 70 43-112 99-173 (178)
86 3nbx_X ATPase RAVA; AAA+ ATPas 81.9 3.3 0.00011 44.7 8.3 100 44-146 110-260 (500)
87 3cf2_A TER ATPase, transitiona 81.4 0.16 5.6E-06 58.0 -2.1 143 7-150 526-699 (806)
88 1ypw_A Transitional endoplasmi 79.2 0.0098 3.3E-07 67.5 -13.0 145 8-153 527-702 (806)
89 3n70_A Transport activator; si 79.1 0.44 1.5E-05 41.7 0.4 70 10-84 42-116 (145)
90 3ec2_A DNA replication protein 78.1 3.2 0.00011 36.9 5.8 71 15-86 65-145 (180)
91 1g41_A Heat shock protein HSLU 73.6 10 0.00034 40.5 8.9 106 44-150 251-405 (444)
92 3f9v_A Minichromosome maintena 70.1 7.3 0.00025 42.6 7.1 38 44-84 392-444 (595)
93 2i3b_A HCR-ntpase, human cance 69.5 3.5 0.00012 38.4 3.9 69 42-111 104-180 (189)
94 2x8a_A Nuclear valosin-contain 59.5 6.4 0.00022 38.4 3.7 141 8-149 60-233 (274)
95 2lhb_A Hemoglobin V (cyano Met 56.3 8.7 0.0003 34.0 3.8 60 470-539 1-87 (149)
96 2qgz_A Helicase loader, putati 54.5 6.6 0.00022 39.1 2.9 70 15-84 179-258 (308)
97 1t6n_A Probable ATP-dependent 53.7 6.8 0.00023 35.7 2.7 42 43-85 158-201 (220)
98 1vec_A ATP-dependent RNA helic 49.8 5.3 0.00018 35.9 1.2 39 43-83 146-186 (206)
99 2cvh_A DNA repair and recombin 46.7 23 0.0008 31.7 5.1 42 43-84 105-156 (220)
100 4akg_A Glutathione S-transfera 46.2 57 0.0019 42.3 10.0 108 10-117 1286-1433(2695)
101 3f8t_A Predicted ATPase involv 44.8 58 0.002 35.6 8.5 88 43-133 300-426 (506)
102 2w58_A DNAI, primosome compone 44.7 17 0.0006 32.6 3.9 41 44-84 116-159 (202)
103 2w0m_A SSO2452; RECA, SSPF, un 44.4 20 0.00068 32.2 4.2 42 43-84 121-168 (235)
104 3dkp_A Probable ATP-dependent 44.2 5.7 0.00019 37.0 0.6 41 43-83 175-219 (245)
105 3nhm_A Response regulator; pro 41.2 1.2E+02 0.0043 24.2 8.3 74 43-120 47-125 (133)
106 3bor_A Human initiation factor 38.3 6.8 0.00023 36.6 0.1 39 43-83 173-213 (237)
107 1wgl_A TOLL-interacting protei 38.2 22 0.00076 27.9 3.0 29 121-149 22-50 (59)
108 3b6e_A Interferon-induced heli 34.4 21 0.00072 31.8 2.7 22 43-66 162-183 (216)
109 1nlf_A Regulatory protein REPA 34.2 36 0.0012 32.6 4.5 43 43-85 133-182 (279)
110 3llm_A ATP-dependent RNA helic 33.9 46 0.0016 30.9 5.1 40 43-83 176-217 (235)
111 1q0u_A Bstdead; DEAD protein, 33.7 8.1 0.00028 35.4 -0.2 40 43-84 150-191 (219)
112 3n53_A Response regulator rece 33.2 1.5E+02 0.005 24.1 7.6 72 43-118 46-123 (140)
113 1x9f_D Globin C, hemoglobin ch 33.0 37 0.0012 29.5 3.9 47 493-539 5-76 (140)
114 3kto_A Response regulator rece 32.5 1.7E+02 0.0059 23.7 7.9 101 11-119 24-128 (136)
115 3iuy_A Probable ATP-dependent 32.4 10 0.00034 34.9 0.2 37 43-81 167-205 (228)
116 2gxq_A Heat resistant RNA depe 31.6 9.5 0.00033 34.1 -0.1 40 43-84 144-185 (207)
117 1wrb_A DJVLGB; RNA helicase, D 30.8 11 0.00036 35.4 0.1 28 43-72 174-201 (253)
118 1sct_A Hemoglobin II (carbonmo 30.8 35 0.0012 30.1 3.4 49 491-539 12-84 (150)
119 1qde_A EIF4A, translation init 30.6 13 0.00044 33.9 0.6 39 43-83 155-195 (224)
120 3ly5_A ATP-dependent RNA helic 30.5 10 0.00035 36.2 -0.1 37 43-81 201-239 (262)
121 1cr0_A DNA primase/helicase; R 30.4 46 0.0016 32.0 4.5 42 43-84 147-197 (296)
122 2pl3_A Probable ATP-dependent 30.3 10 0.00034 35.1 -0.2 39 43-83 171-211 (236)
123 2orw_A Thymidine kinase; TMTK, 30.0 36 0.0012 31.1 3.5 39 43-85 76-114 (184)
124 2dr3_A UPF0273 protein PH0284; 29.6 57 0.0019 29.6 4.8 42 43-84 128-173 (247)
125 3lua_A Response regulator rece 28.5 1.9E+02 0.0065 23.4 7.5 94 16-118 28-128 (140)
126 3ber_A Probable ATP-dependent 28.4 12 0.00039 35.6 -0.2 39 43-83 186-226 (249)
127 2oxc_A Probable ATP-dependent 27.6 13 0.00045 34.4 0.1 39 43-83 166-207 (230)
128 2c0k_A Hemoglobin; oxygen tran 27.3 35 0.0012 30.2 2.8 49 493-541 4-78 (151)
129 2qxy_A Response regulator; reg 26.9 1.4E+02 0.0048 24.2 6.4 95 12-117 23-121 (142)
130 1x9f_B Erythrocruorin, globin 26.7 54 0.0018 28.7 3.9 47 493-539 7-78 (145)
131 2db3_A ATP-dependent RNA helic 26.7 24 0.00082 36.2 1.9 28 43-72 203-230 (434)
132 3gt7_A Sensor protein; structu 26.1 1.3E+02 0.0045 25.2 6.2 98 11-118 25-128 (154)
133 2dhy_A CUE domain-containing p 25.8 58 0.002 26.2 3.6 44 103-150 17-60 (67)
134 3cg4_A Response regulator rece 25.6 2.6E+02 0.009 22.5 8.6 70 43-116 51-126 (142)
135 2whx_A Serine protease/ntpase/ 25.5 1.1E+02 0.0038 33.5 6.9 40 43-85 277-319 (618)
136 3fmo_B ATP-dependent RNA helic 25.5 14 0.00047 36.3 -0.2 40 43-83 235-276 (300)
137 1yhu_A Hemoglobin A1 chain; gl 25.2 63 0.0022 28.4 4.1 46 493-538 5-75 (145)
138 3fe2_A Probable ATP-dependent 24.0 12 0.0004 35.0 -1.0 39 43-83 176-216 (242)
139 2a5y_B CED-4; apoptosis; HET: 24.0 87 0.003 33.2 5.6 84 44-138 244-330 (549)
140 2v6i_A RNA helicase; membrane, 23.6 1.3E+02 0.0044 30.9 6.7 43 43-85 93-135 (431)
141 1n0w_A DNA repair protein RAD5 23.2 67 0.0023 29.2 4.0 42 43-84 119-174 (243)
142 1xti_A Probable ATP-dependent 23.0 40 0.0014 32.8 2.6 41 42-83 151-193 (391)
143 2r6a_A DNAB helicase, replicat 22.6 84 0.0029 32.7 5.1 40 43-82 313-362 (454)
144 3gl9_A Response regulator; bet 21.7 1.1E+02 0.0038 24.5 4.7 95 11-115 20-120 (122)
145 3sqw_A ATP-dependent RNA helic 21.6 27 0.00094 37.1 1.2 40 43-84 175-223 (579)
146 4aby_A DNA repair protein RECN 21.2 1.1E+02 0.0036 30.8 5.3 39 45-85 317-357 (415)
147 4akg_A Glutathione S-transfera 20.8 1.9E+02 0.0064 37.7 8.4 116 9-132 662-807 (2695)
148 2r2a_A Uncharacterized protein 20.7 14 0.00047 34.8 -1.3 60 43-102 87-153 (199)
149 1out_A Hemoglobin I; heme, oxy 20.6 80 0.0027 27.7 3.8 48 493-540 6-75 (143)
150 1cg5_A Protein (hemoglobin); o 20.5 73 0.0025 27.8 3.5 48 493-540 5-74 (141)
151 3i5x_A ATP-dependent RNA helic 20.5 30 0.001 36.2 1.2 28 43-72 226-253 (563)
152 1otr_A Protein CUE2; protein-p 20.0 80 0.0027 24.0 3.1 25 121-145 17-41 (49)
No 1
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=4.2e-17 Score=174.45 Aligned_cols=200 Identities=22% Similarity=0.203 Sum_probs=149.7
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-------c-----ccccccCC--------CCCCcEEEEeCCCCCCcccHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-------S-----HGVMGKSD--------NHVKPLILIEDVDVFFPEDRGFIAGIQQ 68 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-------n-----~~v~gsl~--------~~kkkLILiDEVD~Lf~eDrGf~sAL~~ 68 (555)
..++|+++|+.++|+|+++.+.. . ..+.+.+. ..++.+|||||||.|+.++++++.+|.+
T Consensus 94 a~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~ 173 (516)
T 1sxj_A 94 AHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQ 173 (516)
T ss_dssp HHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHH
Confidence 45889999999999999996542 0 01111111 1356899999999999989999999999
Q ss_pred HHHHcCCcEEEEecCCC-CCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 69 IAEKAKGPVILTSNSNN-ITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 69 liekSKrPIILtCND~n-~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
+++..++|||+|||+.. +.++++.. +..++|.+|+..++..+|..+|.+||+.++++.++.|++.+.||+|++++.||
T Consensus 174 ~l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 174 FCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 99999999999999976 44454444 68999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccc-------ccccccCCCCCCcccccccCCCccCCCC--Cch---hHHHHHHHHHhhhhhhhccc
Q 008751 147 FWCQNKGYGKDK-------KLQKLYVPELFDPDAGHHMLPKKIPWGF--PSQ---LSELVVKEIMKSLSLMEENS 209 (555)
Q Consensus 147 f~s~s~~~~~~k-------~~~k~~~~~pFD~i~g~~l~p~i~p~~~--P~~---L~el~l~Ei~~si~~~ee~~ 209 (555)
+++..++..+.. .|++.....+|+ ++++.+..+++...- ... .+++++.+....+..++|||
T Consensus 254 ~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~-~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eNy 327 (516)
T 1sxj_A 254 TISTTTKTINHENINEISKAWEKNIALKPFD-IAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENY 327 (516)
T ss_dssp HHHHHSSCCCTTHHHHHHHHHHTTTTSHHHH-HHHHHTBGGGTSTTGGGTSCHHHHHHHHTTSTTTHHHHHHHHS
T ss_pred HHHhcCCCCchHHHHHHHHhhccCCCCCHHH-HHHHHhcCCccccccccCCCHHHhhhhhccCHHHHHHHHHHHh
Confidence 998865432222 255666677888 666666555432210 011 24445555555556666655
No 2
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.40 E-value=8.9e-13 Score=130.56 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=110.4
Q ss_pred hhHHHhhCCCceEEEeCCCcccc---c----ccccccCCCCCCcEEEEeCCCCCC-cccHHHHHHHHHHHHH--cCCcEE
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN---S----HGVMGKSDNHVKPLILIEDVDVFF-PEDRGFIAGIQQIAEK--AKGPVI 78 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r---n----~~v~gsl~~~kkkLILiDEVD~Lf-~eDrGf~sAL~~liek--SKrPII 78 (555)
..++|+++|.+++|+|+++.+.. . ......+. .++++|||||+|.++ .+ .+.+|.++++. .+++||
T Consensus 65 a~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~-~~~~vliiDEi~~l~~~~---~~~~L~~~le~~~~~~~iI 140 (324)
T 3u61_B 65 AKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFD-GRQKVIVIDEFDRSGLAE---SQRHLRSFMEAYSSNCSII 140 (324)
T ss_dssp HHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCS-SCEEEEEEESCCCGGGHH---HHHHHHHHHHHHGGGCEEE
T ss_pred HHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccC-CCCeEEEEECCcccCcHH---HHHHHHHHHHhCCCCcEEE
Confidence 45789999999999999985421 1 11111222 367899999999997 43 46678888876 578999
Q ss_pred EEecCCCCCCcCccc-eeEEEecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 79 LTSNSNNITLPDSLD-RLEVSFTMPMPKD-------LLSHLQMICAAEKVELQQ-HLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 79 LtCND~n~~L~~l~~-~l~I~FkrPs~~e-------I~srL~~Ic~kEgl~Id~-~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
++||......+.+++ +..++|.+|+..+ +..++..+|.+||+.+++ +.++.|+..++||+|+++|.||.++
T Consensus 141 ~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 141 ITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp EEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG
T ss_pred EEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 999998765566666 5789999999765 678889999999999998 9999999999999999999999988
No 3
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=5e-11 Score=118.74 Aligned_cols=107 Identities=14% Similarity=0.274 Sum_probs=94.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEK 119 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEg 119 (555)
++++|||||+|.|. ...+.+|.++++. .+++||++||+....++.+++ |..++|++|+..++..+|..+|.+||
T Consensus 134 ~~~vlilDE~~~L~---~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 134 RYKCVIINEANSLT---KDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp CCEEEEEECTTSSC---HHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCccccC---HHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC
Confidence 67899999999974 4467888888886 356899999998876666666 68899999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 120 VELQ-QHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 120 l~Id-~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
+.++ ++.++.|+..++||+|++++.||......
T Consensus 211 ~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp CEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTT
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999 99999999999999999999999877653
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.16 E-value=3.5e-11 Score=116.86 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=108.8
Q ss_pred HHHhhC-----CCceEEEeCCCccccc-------ccc-cccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCC
Q 008751 11 EAAQHA-----DDEVVEVIHIPDDENS-------HGV-MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKG 75 (555)
Q Consensus 11 ~iAkel-----Gy~VIELNASDdR~rn-------~~v-~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKr 75 (555)
.+|+.+ +..++++|+++.++.. ... ...+...++++||+||+|.+..+ .+.+|.++++. .++
T Consensus 57 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---~~~~L~~~le~~~~~~ 133 (319)
T 2chq_A 57 ALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---AQAALRRTMEMYSKSC 133 (319)
T ss_dssp HHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH---HHHTTGGGTSSSSSSE
T ss_pred HHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH---HHHHHHHHHHhcCCCC
Confidence 455553 4568999999854320 111 12233346789999999999764 46677777775 457
Q ss_pred cEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 76 PVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 76 PIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
+||++||......+.+++ +..++|.+|+..++..+|..++.++|+.++++.++.|+..++||+|++++.||.++..
T Consensus 134 ~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 210 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI 210 (319)
T ss_dssp EEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred eEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 899999987765565665 5789999999999999999999999999999999999999999999999999988765
No 5
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=1.2e-10 Score=116.88 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=105.4
Q ss_pred CceEEEeCCCcccc----c---c-cccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCC
Q 008751 18 DEVVEVIHIPDDEN----S---H-GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (555)
Q Consensus 18 y~VIELNASDdR~r----n---~-~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~ 87 (555)
..++|+|+++.++. . . ..........++++|+||+|.|+.+ .+.+|.++++. ..+.+|++||...+.
T Consensus 77 ~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~---~~~~L~~~le~~~~~~~~il~~n~~~~i 153 (340)
T 1sxj_C 77 NMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA---AQNALRRVIERYTKNTRFCVLANYAHKL 153 (340)
T ss_dssp HHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH---HHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH---HHHHHHHHHhcCCCCeEEEEEecCcccc
Confidence 46999999986432 1 0 1112222235799999999999864 46788888886 356799999988776
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
++.+++ |..++|.+++..++..+|..++.+||+.+++..+..|+..++||+|++++.||.....
T Consensus 154 ~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~ 218 (340)
T 1sxj_C 154 TPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKAT 218 (340)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTT
T ss_pred chhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 676776 5789999999999999999999999999999999999999999999999999976543
No 6
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=1.8e-10 Score=111.99 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=105.5
Q ss_pred CCceEEEeCCCcccc----c---ccc--cccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCC
Q 008751 17 DDEVVEVIHIPDDEN----S---HGV--MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNN 85 (555)
Q Consensus 17 Gy~VIELNASDdR~r----n---~~v--~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n 85 (555)
+..++++|+++.+.. . ... ...+...++++|||||+|.+..+ .+.+|.++++. .++.||++||+..
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~---~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG---AQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH---HHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred cCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH---HHHHHHHHHhccCCCceEEEEeCChh
Confidence 567999999986431 0 111 11121335789999999999764 46778888886 4568999999877
Q ss_pred CCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 86 ITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 86 ~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
...+.+++ +..++|.+|+..++..+|..++.++|+.++++.++.|+..++||+|++++.|+.....
T Consensus 149 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 149 KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG 215 (323)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 65555665 5789999999999999999999999999999999999999999999999999987754
No 7
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=1.2e-10 Score=113.57 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=104.5
Q ss_pred CceEEEeCCCcccc--------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCC
Q 008751 18 DEVVEVIHIPDDEN--------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (555)
Q Consensus 18 y~VIELNASDdR~r--------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~ 87 (555)
..++++|+++.++. .......+...++++||+||+|.+..+ .+.+|.++++. ..++||++||.....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---~~~~L~~~le~~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 77 HNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---AQQALRRTMEMFSSNVRFILSCNYSSKI 153 (327)
T ss_dssp HHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH---HHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH---HHHHHHHHHHhcCCCCeEEEEeCCcccc
Confidence 45999999885421 011122233246789999999999764 56788888886 456899999987765
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
.+.+.+ +..++|.+++..++..+|..++.++|+.++++.++.|+..++||+|++++.||.....
T Consensus 154 ~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 218 (327)
T 1iqp_A 154 IEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL 218 (327)
T ss_dssp CHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhc
Confidence 555555 5789999999999999999999999999999999999999999999999999987654
No 8
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.91 E-value=1.2e-09 Score=109.63 Aligned_cols=128 Identities=9% Similarity=-0.032 Sum_probs=100.8
Q ss_pred ceEEEeCCCcccc--cccccccCCCCCCcEEEEeCCCC-CCcccHHHHHHHHHHHHH--cCCcEEEEecCCCC------C
Q 008751 19 EVVEVIHIPDDEN--SHGVMGKSDNHVKPLILIEDVDV-FFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI------T 87 (555)
Q Consensus 19 ~VIELNASDdR~r--n~~v~gsl~~~kkkLILiDEVD~-Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~------~ 87 (555)
.++++++.++... ......++++ .+++||+||+|. ++.+ .+.+|.++++. ..+.+|++|++.++ .
T Consensus 51 ~~~~~~~~~~~~~l~~~~~~~plf~-~~kvvii~~~~~kl~~~---~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~ 126 (343)
T 1jr3_D 51 HTFSIDPNTDWNAIFSLCQAMSLFA-SRQTLLLLLPENGPNAA---INEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAW 126 (343)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHCC-SCEEEEEECCSSCCCTT---HHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHH
T ss_pred EEEEecCCCCHHHHHHHhcCcCCcc-CCeEEEEECCCCCCChH---HHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHH
Confidence 5778886544332 2223334454 689999999999 8764 57889999986 45679999987542 1
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
++.+.+ |..++|.+++..++..+|..++.++|+.++++.++.|++.++||+|.+++.|+-.+.
T Consensus 127 ~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 127 FTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSL 190 (343)
T ss_dssp HHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 222344 689999999999999999999999999999999999999999999999999997665
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.91 E-value=1.1e-08 Score=92.50 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=102.5
Q ss_pred CCceEEEeCCCccccc-------cc-ccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCC
Q 008751 17 DDEVVEVIHIPDDENS-------HG-VMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI 86 (555)
Q Consensus 17 Gy~VIELNASDdR~rn-------~~-v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~ 86 (555)
+..++++|+++..... .. ........++.+|+|||+|.+... .+.+|.++++. .+.+||+++|....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 68 RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---AQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp GGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH---HHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred ccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH---HHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 5668999998754310 00 011122346789999999999764 45677777775 35679999988754
Q ss_pred CCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 87 TLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 87 ~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
..+.+++ +..+.|.+|+..++..+|..++.++|+.++++.++.|+..++||+|++++.|+.++...
T Consensus 145 ~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 145 IIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211 (226)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 4444454 35899999999999999999999999999999999999999999999999999887654
No 10
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=3.1e-09 Score=105.02 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=91.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEK 119 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEg 119 (555)
.+++|||||+|.+... .+.+|.++++.. +.+||++||.....++.+++ +..+.|.+|+..++..+|..++.++|
T Consensus 133 ~~~vliiDE~~~l~~~---~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD---AQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp SCEEEEETTGGGSCHH---HHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CceEEEEECCCccCHH---HHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhC
Confidence 5679999999999764 457788888763 45799999988766666666 47899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 120 VELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 120 l~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
+.++++.++.|+..+.||+|++++.|+.+...
T Consensus 210 ~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 210 VKCDDGVLERILDISAGDLRRGITLLQSASKG 241 (353)
T ss_dssp CCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999976653
No 11
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.84 E-value=2.4e-08 Score=99.45 Aligned_cols=129 Identities=11% Similarity=0.103 Sum_probs=99.8
Q ss_pred CceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCC
Q 008751 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (555)
Q Consensus 18 y~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L 88 (555)
.+++++++++.+.. ....... ...++++|||||+|.+.. ..+.+|.++++. ..+.+|+++|+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~vliiDe~~~l~~---~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAP-ARGRFKVYLIDEVHMLSR---HSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCC-SSSSSEEEEEECGGGSCH---HHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred CceEEecccccCCHHHHHHHHHHHhhcc-ccCCeEEEEEECcchhcH---HHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 46899998753211 0111111 223678999999999965 356788888876 3456899998876555
Q ss_pred cCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 89 PDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 89 ~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
+.+++ +..++|.+|+..++..+|..++.++|+.++++.++.|+..++||+|.+++.|+....
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 55555 588999999999999999999999999999999999999999999999999976543
No 12
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.84 E-value=5.9e-09 Score=105.22 Aligned_cols=122 Identities=8% Similarity=-0.021 Sum_probs=95.3
Q ss_pred CCceEEEeCC---Cccc----c---cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCC
Q 008751 17 DDEVVEVIHI---PDDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSN 84 (555)
Q Consensus 17 Gy~VIELNAS---DdR~----r---n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~ 84 (555)
..+++++++. ..+. | ........ .+++++|||||+|.|+.+ ...+|.++++. .++.|||+||++
T Consensus 73 ~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~-~~~~kvviIdead~l~~~---a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 73 HPDYYTLAPEKGKNTLGVDAVREVTEKLNEHAR-LGGAKVVWVTDAALLTDA---AANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp CTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCT-TSSCEEEEESCGGGBCHH---HHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCEEEEeccccCCCCCHHHHHHHHHHHhhccc-cCCcEEEEECchhhcCHH---HHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 4679999985 3221 1 11111122 236899999999999864 46788888886 346699999998
Q ss_pred CCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 85 NITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 85 n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
.+.++.+++ |..++|++|+..++..+|..++ .++++.+..++..++||+|++++.|+.
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~ 207 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQG 207 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSS
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 877777777 6889999999999999998876 678999999999999999999999874
No 13
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=2.7e-09 Score=107.81 Aligned_cols=117 Identities=10% Similarity=0.111 Sum_probs=92.1
Q ss_pred CCceEEEeCCC-ccc----c---cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCC
Q 008751 17 DDEVVEVIHIP-DDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNI 86 (555)
Q Consensus 17 Gy~VIELNASD-dR~----r---n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~ 86 (555)
..+++|+||++ +++ | ..+....+. +++++|||||+|.|+.+ .+.||.++++.- ++.|||+||++++
T Consensus 49 ~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~-~~~kvviIdead~lt~~---a~naLLk~LEep~~~t~fIl~t~~~~k 124 (305)
T 2gno_A 49 ASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL-YTRKYVIVHDCERMTQQ---AANAFLKALEEPPEYAVIVLNTRRWHY 124 (305)
T ss_dssp TTTEEEECCSSSCBCHHHHHHHHHHHTSCCSS-SSSEEEEETTGGGBCHH---HHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCCEEEEcCCcCCCCHHHHHHHHHHHhhcccc-CCceEEEeccHHHhCHH---HHHHHHHHHhCCCCCeEEEEEECChHh
Confidence 56899999985 332 1 111122223 36899999999999864 468999999973 5679999999988
Q ss_pred CCcCccceeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 87 TLPDSLDRLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 87 ~L~~l~~~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
.++.++++ .++|++|+..++..+|..++ | ++++.+ ..+.||+|++||.||.
T Consensus 125 l~~tI~SR-~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~ 175 (305)
T 2gno_A 125 LLPTIKSR-VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKL 175 (305)
T ss_dssp SCHHHHTT-SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHH
T ss_pred ChHHHHce-eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHH
Confidence 88888889 99999999999999999998 3 666665 4468999999999973
No 14
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.75 E-value=8e-08 Score=88.83 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=95.2
Q ss_pred hCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHH----HHHcCCcEEEEecCCCC----
Q 008751 15 HADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQI----AEKAKGPVILTSNSNNI---- 86 (555)
Q Consensus 15 elGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~l----iekSKrPIILtCND~n~---- 86 (555)
..|+.++.+++++-..........+ .++.+|+|||+|.+.... ..+..+..+ .+..+.+||+++|....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vliiDe~~~~~~~~-~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 78 ELERRSFYIPLGIHASISTALLEGL--EQFDLICIDDVDAVAGHP-LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp HTTCCEEEEEGGGGGGSCGGGGTTG--GGSSEEEEETGGGGTTCH-HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred HcCCeEEEEEHHHHHHHHHHHHHhc--cCCCEEEEeccccccCCH-HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 3468899999877433211111111 246899999999987642 223344444 44333349999987542
Q ss_pred CCcCccc-e---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 87 TLPDSLD-R---LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 87 ~L~~l~~-~---l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
..+.+++ + ..+.|.+|+..++..+|...+..+|+.++++.++.|+..+.||+|++++.|+....
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDK 222 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 1233333 2 68999999999999999999999999999999999999999999999999986554
No 15
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.65 E-value=1.3e-07 Score=85.96 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=87.8
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
.++.+|+|||+|.+.. ..+.+|.++++. .+..||+++|......+.+++ +..+.|.+++..++..++..++.++
T Consensus 125 ~~~~vlviDe~~~l~~---~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~ 201 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR---HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE 201 (250)
T ss_dssp SSSEEEEEETGGGSCH---HHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECcccccH---HHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3568999999999854 356778888875 345688999886544344444 4789999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 119 KVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 119 gl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
|+.++++.++.|+..++|++|.+++.++....
T Consensus 202 ~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~ 233 (250)
T 1njg_A 202 HIAHEPRALQLLARAAEGSLRDALSLTDQAIA 233 (250)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999987654
No 16
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.60 E-value=7.7e-08 Score=102.07 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=104.2
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-----cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecC
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND 83 (555)
...+|+.++..++++|++..-.+ ...........++++|+|||||.+... .+.+|..+++..++.||++++.
T Consensus 67 Ar~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~---~q~~LL~~le~~~v~lI~att~ 143 (447)
T 3pvs_A 67 AEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS---QQDAFLPHIEDGTITFIGATTE 143 (447)
T ss_dssp HHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------CCHHHHHTTSCEEEEEESS
T ss_pred HHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH---HHHHHHHHHhcCceEEEecCCC
Confidence 45789999999999999773211 000000011235789999999999764 3567888888888778877755
Q ss_pred CC--CCCcCccc-eeEEEecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 84 NN--ITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAA-------EKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 84 ~n--~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~k-------Egl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
.. ...+.+++ +..+.|.+|+..++...|..++.. +++.++++.++.|+..+.||+|+++|.|+......
T Consensus 144 n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 144 NPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMA 222 (447)
T ss_dssp CGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHS
T ss_pred CcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 42 23344555 578899999999999999999987 67889999999999999999999999999877654
No 17
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.50 E-value=4.7e-07 Score=89.82 Aligned_cols=136 Identities=9% Similarity=0.062 Sum_probs=103.6
Q ss_pred hhHHHhhCCCceEEEeCCCcccccccccccC-CCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC-------------
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKS-DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK------------- 74 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~~v~gsl-~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK------------- 74 (555)
...+|+.++..++++|++....... ..+.+ ......+|+|||+|.+..+ .+.+|.+.++..+
T Consensus 72 a~~ia~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vl~lDEi~~l~~~---~~~~Ll~~l~~~~~~~~~~~~~~~~~ 147 (338)
T 3pfi_A 72 ANIISYEMSANIKTTAAPMIEKSGD-LAAILTNLSEGDILFIDEIHRLSPA---IEEVLYPAMEDYRLDIIIGSGPAAQT 147 (338)
T ss_dssp HHHHHHHTTCCEEEEEGGGCCSHHH-HHHHHHTCCTTCEEEEETGGGCCHH---HHHHHHHHHHTSCC---------CCC
T ss_pred HHHHHHHhCCCeEEecchhccchhH-HHHHHHhccCCCEEEEechhhcCHH---HHHHHHHHHHhccchhhcccCccccc
Confidence 4577999999999999966332100 00001 1125689999999999753 5667777777543
Q ss_pred -------CcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 75 -------GPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 75 -------rPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
..||+++|......++++++ ..+.|..|+..++...|...+...++.++++.++.|+..+.|++|.+++.|
T Consensus 148 ~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 148 IKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 34777777765444455564 689999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 008751 146 QFW 148 (555)
Q Consensus 146 Qf~ 148 (555)
+..
T Consensus 228 ~~~ 230 (338)
T 3pfi_A 228 KRV 230 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.49 E-value=1.6e-06 Score=85.01 Aligned_cols=138 Identities=9% Similarity=0.035 Sum_probs=104.3
Q ss_pred hhHHHhhCCCceEEEeCCCcccccccccccCCC--CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC------------
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKSDN--HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK------------ 74 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~~v~gsl~~--~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK------------ 74 (555)
...+|++++..++.+|++....... ..+.+.. .++.+|+|||+|.+... .+..|.++++...
T Consensus 55 a~~i~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~l~lDEi~~l~~~---~~~~L~~~l~~~~~~~v~~~~~~~~ 130 (324)
T 1hqc_A 55 AHVIAHELGVNLRVTSGPAIEKPGD-LAAILANSLEEGDILFIDEIHRLSRQ---AEEHLYPAMEDFVMDIVIGQGPAAR 130 (324)
T ss_dssp HHHHHHHHTCCEEEECTTTCCSHHH-HHHHHTTTCCTTCEEEETTTTSCCHH---HHHHHHHHHHHSEEEECCSSSSSCC
T ss_pred HHHHHHHhCCCEEEEeccccCChHH-HHHHHHHhccCCCEEEEECCcccccc---hHHHHHHHHHhhhhHHhcccccccc
Confidence 4577888899999999876432100 1111111 35679999999999754 4566777776532
Q ss_pred --------CcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 008751 75 --------GPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMH 144 (555)
Q Consensus 75 --------rPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~ 144 (555)
..+|+++|......+.++++ ..+.|..|+..++...|...+...|+.++++.++.|+..+.|++|.+.+.
T Consensus 131 ~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~ 210 (324)
T 1hqc_A 131 TIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRL 210 (324)
T ss_dssp CEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHH
T ss_pred ccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHH
Confidence 34888888775444455564 47999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 008751 145 LQFWCQ 150 (555)
Q Consensus 145 LQf~s~ 150 (555)
++....
T Consensus 211 l~~~~~ 216 (324)
T 1hqc_A 211 FRRVRD 216 (324)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987653
No 19
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.47 E-value=5e-07 Score=90.34 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=85.5
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCC-------------CCCCcCccc-eeEEEecCCCHHHHHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN-------------NITLPDSLD-RLEVSFTMPMPKDLLS 109 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~-------------n~~L~~l~~-~l~I~FkrPs~~eI~s 109 (555)
+.+|+|||||.|.. ..+.+|.++++....|++++++.. ....+.+++ +..+.|.+|+.+++..
T Consensus 190 ~~vl~IDEi~~l~~---~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI---ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp BCEEEEESGGGSBH---HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred CceEEEhhccccCh---HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHH
Confidence 35999999999954 467788888888777887766652 222234555 4568999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHhh
Q 008751 110 HLQMICAAEKVELQQHLLVQLIESCR-ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 110 rL~~Ic~kEgl~Id~~~L~~Li~~S~-GDIRqaLN~LQf~s~ 150 (555)
+|...+..+++.++++.++.|+..+. ||+|.+++.|+....
T Consensus 267 il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 267 ILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998 999999999987543
No 20
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.40 E-value=4.1e-07 Score=95.78 Aligned_cols=101 Identities=15% Similarity=0.244 Sum_probs=83.8
Q ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEE-EEecC-------------CCCCCcCccc-eeEEEecCCCHHHHHH
Q 008751 45 PLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVI-LTSNS-------------NNITLPDSLD-RLEVSFTMPMPKDLLS 109 (555)
Q Consensus 45 kLILiDEVD~Lf~eDrGf~sAL~~liekSKrPII-LtCND-------------~n~~L~~l~~-~l~I~FkrPs~~eI~s 109 (555)
++++|||||.|.. ..+.+|.++++....+++ |.+|. +....+.+++ |..++|.+++.+++..
T Consensus 297 ~VliIDEa~~l~~---~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDI---ECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBH---HHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCH---HHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHH
Confidence 6999999999965 367889999987655544 46633 2334445666 5778999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHH
Q 008751 110 HLQMICAAEKVELQQHLLVQLIESC-RADIRKTIMHLQFW 148 (555)
Q Consensus 110 rL~~Ic~kEgl~Id~~~L~~Li~~S-~GDIRqaLN~LQf~ 148 (555)
+|..+|..||+.++++.+..|+..+ +|+.|++++.|+..
T Consensus 374 iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a 413 (456)
T 2c9o_A 374 IIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPA 413 (456)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999864
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.31 E-value=1.3e-06 Score=89.57 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=98.0
Q ss_pred chhHHHhhCCCceEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCCccc--------HHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPED--------RGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r----n-~~v~gsl---~~~kkkLILiDEVD~Lf~eD--------rGf~sAL~~lie 71 (555)
...++|+++|..++++|+++-... . ......+ ....+.+|+|||||.|+... ...+..+...+.
T Consensus 164 la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 243 (389)
T 3vfd_A 164 LAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD 243 (389)
T ss_dssp HHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence 345789999999999999884431 0 0000000 11245799999999986431 223334444443
Q ss_pred H------cCCcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Q 008751 72 K------AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIM 143 (555)
Q Consensus 72 k------SKrPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN 143 (555)
. .++.||.++|.....-+.++++ ..+.|..|+..+....|..++..++..+++..+..|+..+.|+.++.|.
T Consensus 244 ~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 244 GVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp HHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred cccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 2 2345777888765433444554 4689999999999999999999999999999999999999999999998
Q ss_pred HHHHHh
Q 008751 144 HLQFWC 149 (555)
Q Consensus 144 ~LQf~s 149 (555)
.|...+
T Consensus 324 ~L~~~a 329 (389)
T 3vfd_A 324 ALAKDA 329 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886544
No 22
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.24 E-value=7.1e-07 Score=87.09 Aligned_cols=132 Identities=13% Similarity=0.059 Sum_probs=96.0
Q ss_pred ceEEEeCCCccccc-----ccccccCCCCCCcEEEEeCCCCCCc------ccHHHHHHHHHHHHHc--CCcEEEEecCCC
Q 008751 19 EVVEVIHIPDDENS-----HGVMGKSDNHVKPLILIEDVDVFFP------EDRGFIAGIQQIAEKA--KGPVILTSNSNN 85 (555)
Q Consensus 19 ~VIELNASDdR~rn-----~~v~gsl~~~kkkLILiDEVD~Lf~------eDrGf~sAL~~liekS--KrPIILtCND~n 85 (555)
.++++|+++-...- ....+.+......+|+|||+|.++. .....+.+|.++++.. +..||+++|...
T Consensus 101 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 101 HLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADR 180 (309)
T ss_dssp CEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHH
T ss_pred cEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHH
Confidence 79999987732210 0001111112457999999999863 2556778888888875 446777776531
Q ss_pred --C---CCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHhh
Q 008751 86 --I---TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES--------CRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 86 --~---~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~--------S~GDIRqaLN~LQf~s~ 150 (555)
. .-+.++++ ..|.|.+|+..++...+..++.+.++.++++.++.++.. ..||+|.+.+.|+....
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 1 11445553 689999999999999999999999999999999999886 45999999999997664
No 23
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.08 E-value=1e-05 Score=78.20 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=95.8
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-------ccccc-------ccCCC-CCCcEEEEeCCCCCCccc---------HHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-------SHGVM-------GKSDN-HVKPLILIEDVDVFFPED---------RGFIA 64 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-------n~~v~-------gsl~~-~kkkLILiDEVD~Lf~eD---------rGf~s 64 (555)
...+|+.++..++++|+++-... ..... +.+.. ..+.+|+|||+|.+.... .+.+.
T Consensus 67 a~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~ 146 (310)
T 1ofh_A 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQR 146 (310)
T ss_dssp HHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHH
Confidence 45788899999999999874321 00000 00000 135799999999997642 24477
Q ss_pred HHHHHHHHc------------CCcEEEEecC----CCCCCcCccce--eEEEecCCCHHHHHHHHH-----------HHH
Q 008751 65 GIQQIAEKA------------KGPVILTSNS----NNITLPDSLDR--LEVSFTMPMPKDLLSHLQ-----------MIC 115 (555)
Q Consensus 65 AL~~liekS------------KrPIILtCND----~n~~L~~l~~~--l~I~FkrPs~~eI~srL~-----------~Ic 115 (555)
+|.++++.. ++.||+++|. .....+.++++ ..|.|.+|+.+++...|. ..+
T Consensus 147 ~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 226 (310)
T 1ofh_A 147 DLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALM 226 (310)
T ss_dssp HHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888753 3445555432 12222334454 469999999998888887 344
Q ss_pred HHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHh
Q 008751 116 AAEKV--ELQQHLLVQLIESC--------RADIRKTIMHLQFWC 149 (555)
Q Consensus 116 ~kEgl--~Id~~~L~~Li~~S--------~GDIRqaLN~LQf~s 149 (555)
..++. .+++++++.|+..+ .||+|++.+.|+...
T Consensus 227 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 227 ATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp HHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 55674 68999999999998 899999999999765
No 24
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.06 E-value=9.9e-06 Score=80.63 Aligned_cols=105 Identities=10% Similarity=0.139 Sum_probs=82.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH------cCCcEEEEecCCC---CCCcCccce---eEEEecCCCHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK------AKGPVILTSNSNN---ITLPDSLDR---LEVSFTMPMPKDLLSH 110 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek------SKrPIILtCND~n---~~L~~l~~~---l~I~FkrPs~~eI~sr 110 (555)
++.+|+|||+|.+ +...+.+|.++++. .+.+||+++|+.. ...++++++ ..+.|.+++..++..+
T Consensus 125 ~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~ 201 (389)
T 1fnn_A 125 LYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp CCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHH
T ss_pred CeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHH
Confidence 4679999999999 55677788777742 5778999999872 222333332 3799999999999999
Q ss_pred HHHHHHHc--CCCCCHHHHHHHHHHc---------CCcHHHHHHHHHHHhh
Q 008751 111 LQMICAAE--KVELQQHLLVQLIESC---------RADIRKTIMHLQFWCQ 150 (555)
Q Consensus 111 L~~Ic~kE--gl~Id~~~L~~Li~~S---------~GDIRqaLN~LQf~s~ 150 (555)
|...+... ...++++.++.|+..+ .||+|.+++.|+....
T Consensus 202 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 202 LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 99988762 3478999999999999 8999999999987554
No 25
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.00 E-value=5e-06 Score=82.31 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=78.3
Q ss_pred CCcEEEEeCCCCCCcc--cHHHHHHHHHHHH----HcCCcEEEEecCCC---CCCcCccce---eEEEecCCCHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE--DRGFIAGIQQIAE----KAKGPVILTSNSNN---ITLPDSLDR---LEVSFTMPMPKDLLSH 110 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e--DrGf~sAL~~lie----kSKrPIILtCND~n---~~L~~l~~~---l~I~FkrPs~~eI~sr 110 (555)
++.+|+|||+|.+... .+.....+.+... ..+..+|+++|... ...+.++++ ..+.|.+++.+++...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~i 209 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDI 209 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 3569999999998654 3333333333332 44668999998863 122223333 4789999999999999
Q ss_pred HHHHHHH--cCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q 008751 111 LQMICAA--EKVELQQHLLVQLIESCR---ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 111 L~~Ic~k--Egl~Id~~~L~~Li~~S~---GDIRqaLN~LQf~s~ 150 (555)
|...+.. .+..++++.++.++..+. ||+|.+++.|+....
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 210 LETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp HHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999876 577899999999999998 999999999987543
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.96 E-value=1.2e-05 Score=84.80 Aligned_cols=140 Identities=13% Similarity=0.117 Sum_probs=98.0
Q ss_pred hHHHhhC-----CCceEEEeCCCcccc--cccccc---cC---CCCCCcEEEEeCCCCCCcc---cHHHHHHHHHHHHHc
Q 008751 10 CEAAQHA-----DDEVVEVIHIPDDEN--SHGVMG---KS---DNHVKPLILIEDVDVFFPE---DRGFIAGIQQIAEKA 73 (555)
Q Consensus 10 ~~iAkel-----Gy~VIELNASDdR~r--n~~v~g---sl---~~~kkkLILiDEVD~Lf~e---DrGf~sAL~~liekS 73 (555)
.++|+++ |..++.+|+++-... .....+ .+ ...+..++||||+|.+... ...+...+..+.+ .
T Consensus 148 ~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~ 226 (440)
T 2z4s_A 148 QSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-S 226 (440)
T ss_dssp HHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-C
Confidence 4566665 888999998763211 000000 00 0115689999999999852 2233344444433 3
Q ss_pred CCcEEEEecCCCC----CCcCccce----eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 74 KGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 74 KrPIILtCND~n~----~L~~l~~~----l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
..+||++++.... ..++++++ ..+.|.+|+..+....|...+..+|+.+++++++.|+..+.||+|.+++.|
T Consensus 227 ~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 227 GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp TCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 4578888887532 22334443 478999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 008751 146 QFWCQ 150 (555)
Q Consensus 146 Qf~s~ 150 (555)
+....
T Consensus 307 ~~~~~ 311 (440)
T 2z4s_A 307 IKLLV 311 (440)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86554
No 27
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.96 E-value=6.1e-06 Score=82.37 Aligned_cols=103 Identities=21% Similarity=0.192 Sum_probs=78.1
Q ss_pred EEEEeCCCCCCcc-cHHH-HHHHHHHHHHcCCcEEEEecCCC---CCCcCccce--eEEEecCCCHHHHHHHHHHHHHH-
Q 008751 46 LILIEDVDVFFPE-DRGF-IAGIQQIAEKAKGPVILTSNSNN---ITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAA- 117 (555)
Q Consensus 46 LILiDEVD~Lf~e-DrGf-~sAL~~liekSKrPIILtCND~n---~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~k- 117 (555)
+|+|||+|.+... +... +..|.... .+.+||+++|+.. ...+.++++ ..+.|.+++..++...|...+..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~--~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~ 213 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD--ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG 213 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS--SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC--cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 9999999998653 1333 33443333 6778999999863 222233332 48999999999999999998875
Q ss_pred -cCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q 008751 118 -EKVELQQHLLVQLIESCR---ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 118 -Egl~Id~~~L~~Li~~S~---GDIRqaLN~LQf~s~ 150 (555)
++..++++.++.++..+. ||+|++++.|+....
T Consensus 214 ~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 214 LIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp SCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 457899999999999988 999999999987654
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.96 E-value=2.1e-05 Score=76.56 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=95.1
Q ss_pred hhHHHhhCCCceEEEeCCCcccccc-----ccc---ccCCCCCCcEEEEeCCCCCCccc--------HHHHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSH-----GVM---GKSDNHVKPLILIEDVDVFFPED--------RGFIAGIQQIAEK 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~-----~v~---gsl~~~kkkLILiDEVD~Lf~eD--------rGf~sAL~~liek 72 (555)
..++|++++..++.+|+++-..... ... ......++.+|+|||+|.+.... +..+..+...+..
T Consensus 71 a~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 71 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDG 150 (297)
T ss_dssp HHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhc
Confidence 4578999999999999987432100 000 00011356899999999997531 2233444444443
Q ss_pred -------cCCcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Q 008751 73 -------AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIM 143 (555)
Q Consensus 73 -------SKrPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN 143 (555)
.++-||.++|.+....+.++++ ..+.|..|+..+....|..++.+++..+++..++.|+..+.|..++.|.
T Consensus 151 ~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 151 LPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp CC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred ccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 2345778888765333334443 5788999999888888899999999999999999999999998887775
Q ss_pred HHH
Q 008751 144 HLQ 146 (555)
Q Consensus 144 ~LQ 146 (555)
.|-
T Consensus 231 ~l~ 233 (297)
T 3b9p_A 231 ALA 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 29
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.86 E-value=0.00011 Score=72.88 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=95.8
Q ss_pred hHHHhhC---CCceEEEeCCCcccc--ccc---ccccCC--CCCCcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCc
Q 008751 10 CEAAQHA---DDEVVEVIHIPDDEN--SHG---VMGKSD--NHVKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGP 76 (555)
Q Consensus 10 ~~iAkel---Gy~VIELNASDdR~r--n~~---v~gsl~--~~kkkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrP 76 (555)
.++|+++ |..++.+|+.+-... ... ....+. -.+..+|+|||+|.+... +..+..+..+++ ....+
T Consensus 55 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~-~~~~~~l~~~l~~~~~~~~~ 133 (324)
T 1l8q_A 55 QAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK-ERTQIEFFHIFNTLYLLEKQ 133 (324)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC-HHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCC-hHHHHHHHHHHHHHHHCCCe
Confidence 4566666 899999999763211 000 000000 013679999999998752 223334444432 23557
Q ss_pred EEEEecCCCC----CCcCccce----eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 008751 77 VILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148 (555)
Q Consensus 77 IILtCND~n~----~L~~l~~~----l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~ 148 (555)
||++++.... ..++++++ ..+.|.+ +..+....|...+...|+.++++.++.|+..+ ||+|..++.|+.+
T Consensus 134 iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~ 211 (324)
T 1l8q_A 134 IILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLI 211 (324)
T ss_dssp EEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHH
T ss_pred EEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 9998875422 12233332 5789998 99999999999999999999999999999999 9999999999876
Q ss_pred hhc
Q 008751 149 CQN 151 (555)
Q Consensus 149 s~s 151 (555)
+..
T Consensus 212 ~~~ 214 (324)
T 1l8q_A 212 KLK 214 (324)
T ss_dssp HHH
T ss_pred HHc
Confidence 655
No 30
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.85 E-value=1.8e-05 Score=80.84 Aligned_cols=143 Identities=12% Similarity=-0.002 Sum_probs=97.7
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCccc--------HHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPED--------RGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~eD--------rGf~sAL~~lie 71 (555)
...++|++++..++.+|+++-..+ .......+ ...++.+|+|||+|.|.... +....++...+.
T Consensus 100 la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 100 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 179 (355)
T ss_dssp HHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhh
Confidence 345899999999999999763221 00000000 11256799999999987531 222344444443
Q ss_pred -----HcCCcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHH
Q 008751 72 -----KAKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DIRK 140 (555)
Q Consensus 72 -----kSKrPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G----DIRq 140 (555)
..++.||.++|.+...-+.++.+ ..+.|..|+..+....|..++...+..+++..++.|+..+.| ||+.
T Consensus 180 ~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 180 GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp HCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 23455777888765433344443 578899999999999999999888888899999999999888 9998
Q ss_pred HHHHHHHHhh
Q 008751 141 TIMHLQFWCQ 150 (555)
Q Consensus 141 aLN~LQf~s~ 150 (555)
.+......+.
T Consensus 260 l~~~A~~~a~ 269 (355)
T 2qp9_X 260 VVKDALMQPI 269 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877665544
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.83 E-value=2e-05 Score=80.28 Aligned_cols=136 Identities=11% Similarity=0.092 Sum_probs=90.9
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----ccccccc---CCCCCCcEEEEeCCCCCCccc--------HHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGK---SDNHVKPLILIEDVDVFFPED--------RGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gs---l~~~kkkLILiDEVD~Lf~eD--------rGf~sAL~~lie 71 (555)
...++|+++|..++.+|+++-... ....... ....++.+|+|||+|.|.... +..+..+...+.
T Consensus 133 la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLD 212 (357)
T ss_dssp HHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHh
Confidence 345889999999999999874321 0000000 011356899999999886531 122333433333
Q ss_pred H------cCCcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHH
Q 008751 72 K------AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DIR 139 (555)
Q Consensus 72 k------SKrPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G----DIR 139 (555)
. .++.||.++|.....-+.++++ ..+.|..|+..+....|..++..+++.+++..++.|+..+.| ||+
T Consensus 213 ~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~ 292 (357)
T 3d8b_A 213 GATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMT 292 (357)
T ss_dssp C----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHH
T ss_pred cccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHH
Confidence 1 2345677788764333334444 478899999999999999999999999999999999999888 555
Q ss_pred HHHH
Q 008751 140 KTIM 143 (555)
Q Consensus 140 qaLN 143 (555)
..+.
T Consensus 293 ~l~~ 296 (357)
T 3d8b_A 293 QLCR 296 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 32
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.0003 Score=71.99 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=73.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHH-----HcCCcEEEEecCCCCC---Cc-Cccce---eEEEecCCCHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE-----KAKGPVILTSNSNNIT---LP-DSLDR---LEVSFTMPMPKDLLSH 110 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~lie-----kSKrPIILtCND~n~~---L~-~l~~~---l~I~FkrPs~~eI~sr 110 (555)
+..+|+|||+|.+. + + ..|..+++ .++.-||+|+|+...+ +. +++++ ..|.|.+++.+++...
T Consensus 132 ~~~ii~lDE~d~l~-~-q---~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~I 206 (318)
T 3te6_A 132 RKTLILIQNPENLL-S-E---KILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQM 206 (318)
T ss_dssp CEEEEEEECCSSSC-C-T---HHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHH
T ss_pred CceEEEEecHHHhh-c-c---hHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHH
Confidence 45699999999998 2 2 34444443 2455567778886521 11 22333 5799999999999998
Q ss_pred HHHHHHHc--C---------------------------------CCCCHHHHHHHHH---HcCCcHHHHHHHHHHHhh
Q 008751 111 LQMICAAE--K---------------------------------VELQQHLLVQLIE---SCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 111 L~~Ic~kE--g---------------------------------l~Id~~~L~~Li~---~S~GDIRqaLN~LQf~s~ 150 (555)
|+.-+..- + +.+++++|+.++. ...||+|+||+.|.....
T Consensus 207 l~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~ 284 (318)
T 3te6_A 207 IITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVE 284 (318)
T ss_dssp HHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence 87665442 1 1479999999988 579999999999986544
No 33
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.66 E-value=3.7e-05 Score=75.89 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=80.5
Q ss_pred CCcEEEEeCCCCCCcc-cHHHHHHHHHHHH---HcCCcEEEEecCCC---CCCcCccce---eEEEecCCCHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE-DRGFIAGIQQIAE---KAKGPVILTSNSNN---ITLPDSLDR---LEVSFTMPMPKDLLSHLQ 112 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e-DrGf~sAL~~lie---kSKrPIILtCND~n---~~L~~l~~~---l~I~FkrPs~~eI~srL~ 112 (555)
++.+|+|||+|.+... +...+..+.+.+. ..+..||+++|+.. ...+.++++ ..+.|.+++..++...|.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~ 207 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILT 207 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHH
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHH
Confidence 3679999999988754 3556777777773 34677899998763 111222222 489999999999999999
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q 008751 113 MICAAE--KVELQQHLLVQLIESCR---ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 113 ~Ic~kE--gl~Id~~~L~~Li~~S~---GDIRqaLN~LQf~s~ 150 (555)
..+... ...++++.++.++..+. ||+|.+++.|+....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 208 KRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp HHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 887653 36889999999999988 999999998886543
No 34
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.63 E-value=6.5e-05 Score=72.52 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=94.6
Q ss_pred chhHHHhhCCCceEEEeCCCccccc-----ccccc---cCCCCCCcEEEEeCCCCCCc--------ccHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDENS-----HGVMG---KSDNHVKPLILIEDVDVFFP--------EDRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~rn-----~~v~g---sl~~~kkkLILiDEVD~Lf~--------eDrGf~sAL~~lie 71 (555)
...++|++++..++++++++-.... ..... ......+.+|+|||+|.+.. ++...+..+..+++
T Consensus 67 la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 67 LAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLA 146 (285)
T ss_dssp HHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHH
Confidence 3467899999999999997743210 00000 00112457999999998842 24455667777665
Q ss_pred Hc-------CCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----
Q 008751 72 KA-------KGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA---- 136 (555)
Q Consensus 72 kS-------KrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G---- 136 (555)
.. ++.||+++|.....-+.++. + ..+.|..|+..+....|...+...++.. +..+..|+..+.|
T Consensus 147 ~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 147 EMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE-DVNLEEIAKMTEGCVGA 225 (285)
T ss_dssp HHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT-TCCHHHHHHHCTTCCHH
T ss_pred HhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC-cCCHHHHHHHcCCCCHH
Confidence 42 34578888876432233333 3 4789999999999999988877665542 2235666666555
Q ss_pred cHHHHHHHHHHHhhcCC
Q 008751 137 DIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 137 DIRqaLN~LQf~s~s~~ 153 (555)
||+..++....++...+
T Consensus 226 ~i~~l~~~a~~~a~~~~ 242 (285)
T 3h4m_A 226 ELKAICTEAGMNAIREL 242 (285)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999988887776543
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.62 E-value=3.2e-05 Score=77.26 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=93.9
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----ccccccc---CCCCCCcEEEEeCCCCCCccc--------HHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGK---SDNHVKPLILIEDVDVFFPED--------RGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gs---l~~~kkkLILiDEVD~Lf~eD--------rGf~sAL~~lie 71 (555)
...++|++++..++.+|+++-..+ ...+... ....++.+|+|||+|.|.... +..+..+...+.
T Consensus 67 la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 67 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp HHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred HHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 346889999999999999773221 0000000 011356799999999987531 122344444443
Q ss_pred H-----cCCcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHH
Q 008751 72 K-----AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DIRK 140 (555)
Q Consensus 72 k-----SKrPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G----DIRq 140 (555)
. ..+-||.++|.+...-+.++++ ..+.|..|+..+....|+..+...+..+++..+..|+..+.| ||+.
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 147 GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp GGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHH
T ss_pred cccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 2 2334666777665433334444 578999999999999999999988888999999999998877 8887
Q ss_pred HHHHHHH
Q 008751 141 TIMHLQF 147 (555)
Q Consensus 141 aLN~LQf 147 (555)
.+.....
T Consensus 227 l~~~a~~ 233 (322)
T 3eie_A 227 VVKDALM 233 (322)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 7765533
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.55 E-value=3.7e-05 Score=74.38 Aligned_cols=138 Identities=9% Similarity=0.128 Sum_probs=85.5
Q ss_pred hhHHHhhCCCceEEEeCCCccccc------ccccccC---CCCCCcEEEEeCCCCCCc------c-cHHHHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENS------HGVMGKS---DNHVKPLILIEDVDVFFP------E-DRGFIAGIQQIAEK 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn------~~v~gsl---~~~kkkLILiDEVD~Lf~------e-DrGf~sAL~~liek 72 (555)
..++|+++|..++++|++++.... ......+ ...+..+|+|||+|.|+. . ...+..+|..+++.
T Consensus 81 a~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~ 160 (272)
T 1d2n_A 81 AAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK 160 (272)
T ss_dssp HHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC
Confidence 457888999999999998743110 0000000 113468999999998743 1 34466677776653
Q ss_pred c---CCc--EEEEecCCCCCCc--Cccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-----cH
Q 008751 73 A---KGP--VILTSNSNNITLP--DSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA-----DI 138 (555)
Q Consensus 73 S---KrP--IILtCND~n~~L~--~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G-----DI 138 (555)
. ..+ ||.++|.... +. .++++ ..|.|.+++.. ..+..++..++ .++++.+..|+..+.| |+
T Consensus 161 ~~~~~~~~~ii~ttn~~~~-l~~~~l~~rf~~~i~~p~l~~r---~~i~~i~~~~~-~~~~~~~~~l~~~~~g~~~~g~i 235 (272)
T 1d2n_A 161 APPQGRKLLIIGTTSRKDV-LQEMEMLNAFSTTIHVPNIATG---EQLLEALELLG-NFKDKERTTIAQQVKGKKVWIGI 235 (272)
T ss_dssp CCSTTCEEEEEEEESCHHH-HHHTTCTTTSSEEEECCCEEEH---HHHHHHHHHHT-CSCHHHHHHHHHHHTTSEEEECH
T ss_pred ccCCCCCEEEEEecCChhh-cchhhhhcccceEEcCCCccHH---HHHHHHHHhcC-CCCHHHHHHHHHHhcCCCccccH
Confidence 2 223 5666666531 11 12333 45666544441 23444444443 5689999999999988 99
Q ss_pred HHHHHHHHHHhhc
Q 008751 139 RKTIMHLQFWCQN 151 (555)
Q Consensus 139 RqaLN~LQf~s~s 151 (555)
|+++|.++.....
T Consensus 236 r~l~~~l~~a~~~ 248 (272)
T 1d2n_A 236 KKLLMLIEMSLQM 248 (272)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987643
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.49 E-value=0.00038 Score=65.85 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=84.0
Q ss_pred hhHHHhhCCCceEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCCccc---------HHHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPED---------RGFIAGIQQIAE 71 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn-----~~v~gsl---~~~kkkLILiDEVD~Lf~eD---------rGf~sAL~~lie 71 (555)
..++|++++..++.+++++-.... ......+ ....+.+|+|||+|.+.... ......+..++.
T Consensus 56 a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~ 135 (262)
T 2qz4_A 56 AKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLV 135 (262)
T ss_dssp HHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHH
Confidence 457899999999999998743210 0000000 11246799999999995421 112234444444
Q ss_pred H-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC---
Q 008751 72 K-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA--- 136 (555)
Q Consensus 72 k-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~-L~~Li~~S~G--- 136 (555)
. .++.||.++|.....-+.++. + ..+.|..|+..+....+...+...++..+... +..|+..+.|
T Consensus 136 ~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 136 EMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred HhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 2 234577777775422122333 3 57889999999999999999999999888764 4677776544
Q ss_pred -cHHHHHHHHHHHh
Q 008751 137 -DIRKTIMHLQFWC 149 (555)
Q Consensus 137 -DIRqaLN~LQf~s 149 (555)
||+..++.....+
T Consensus 216 ~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 216 ADIANICNEAALHA 229 (262)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHH
Confidence 6666666554433
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.44 E-value=0.00013 Score=76.71 Aligned_cols=140 Identities=10% Similarity=0.037 Sum_probs=92.9
Q ss_pred chhHHHhhC-CCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc-----cHHHHHHHHHHHHH-
Q 008751 8 SLCEAAQHA-DDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE-----DRGFIAGIQQIAEK- 72 (555)
Q Consensus 8 ~~~~iAkel-Gy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e-----DrGf~sAL~~liek- 72 (555)
...++|+++ +..++.+|+++-..+ ...+...+ ...++.+|+|||+|.++.. .......+..++..
T Consensus 183 lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l 262 (444)
T 2zan_A 183 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQM 262 (444)
T ss_dssp HHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHH
Confidence 346889999 899999999874321 00011000 1135689999999998542 11122333344332
Q ss_pred -------cCCcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHH
Q 008751 73 -------AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DIR 139 (555)
Q Consensus 73 -------SKrPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G----DIR 139 (555)
.++.||.++|.+...-+.++++ ..+.|..|+..+....|...+...+..+++..+..|+..+.| ||+
T Consensus 263 ~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~ 342 (444)
T 2zan_A 263 QGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS 342 (444)
T ss_dssp TCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHH
T ss_pred hCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 3456888888875444445554 478899999999999998888888888899999999999887 888
Q ss_pred HHHHHHHH
Q 008751 140 KTIMHLQF 147 (555)
Q Consensus 140 qaLN~LQf 147 (555)
..+...-.
T Consensus 343 ~l~~~a~~ 350 (444)
T 2zan_A 343 IIVRDALM 350 (444)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77765544
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.37 E-value=0.00051 Score=69.13 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=90.7
Q ss_pred chhHHHhhC-CCceEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCCcc----c-HHHHHHHHHH---H
Q 008751 8 SLCEAAQHA-DDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE----D-RGFIAGIQQI---A 70 (555)
Q Consensus 8 ~~~~iAkel-Gy~VIELNASDdR~r----n-~~v~gsl---~~~kkkLILiDEVD~Lf~e----D-rGf~sAL~~l---i 70 (555)
...++|+++ +..++.+++++-..+ . ..+...+ ...++.+|+|||+|.+... + ......+.++ +
T Consensus 61 la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 140 (322)
T 1xwi_A 61 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQM 140 (322)
T ss_dssp HHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHH
Confidence 345889999 899999999874321 0 0000000 1135679999999998542 1 1122233333 3
Q ss_pred HH-----cCCcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHH
Q 008751 71 EK-----AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DIR 139 (555)
Q Consensus 71 ek-----SKrPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G----DIR 139 (555)
.. .++-||.++|.+...-+.++.+ ..+.+..|+..+....|...+...+..+++..++.|+..+.| ||+
T Consensus 141 d~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~ 220 (322)
T 1xwi_A 141 QGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS 220 (322)
T ss_dssp HCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHH
T ss_pred hcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 22 2344666778775433444444 578899999999999999988888888899999999998766 666
Q ss_pred HHHHHHH
Q 008751 140 KTIMHLQ 146 (555)
Q Consensus 140 qaLN~LQ 146 (555)
..+....
T Consensus 221 ~l~~~A~ 227 (322)
T 1xwi_A 221 IIVRDAL 227 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 40
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.29 E-value=0.00033 Score=69.51 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=81.4
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC-------CCCCCcEEEEeCCCCCCccc----------HHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS-------DNHVKPLILIEDVDVFFPED----------RGFIAG 65 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl-------~~~kkkLILiDEVD~Lf~eD----------rGf~sA 65 (555)
...++|+++|..++.+++++-..+ ...+...+ ....+.+|+|||+|.+.... +...++
T Consensus 52 la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~ 131 (293)
T 3t15_A 52 QCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 131 (293)
T ss_dssp HHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHH
Confidence 356899999999999998773221 00000000 13357899999999887621 124467
Q ss_pred HHHHHH---------------HcCCcEEEEecCCCCCCcCccc--eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 008751 66 IQQIAE---------------KAKGPVILTSNSNNITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLV 128 (555)
Q Consensus 66 L~~lie---------------kSKrPIILtCND~n~~L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~ 128 (555)
|.+++. ..+++||+|+|+....-+.++. ++...+..|+..+....+..++...+ ++.+.+.
T Consensus 132 Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~--~~~~~l~ 209 (293)
T 3t15_A 132 LMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDN--VPAEDVV 209 (293)
T ss_dssp HHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGC--CCHHHHH
T ss_pred HHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCC--CCHHHHH
Confidence 777764 2468899999998753344442 45544447899998888888887665 4577777
Q ss_pred HHHHHc-CCcHH
Q 008751 129 QLIESC-RADIR 139 (555)
Q Consensus 129 ~Li~~S-~GDIR 139 (555)
.+.... +.||.
T Consensus 210 ~~~~~~~~~~l~ 221 (293)
T 3t15_A 210 KIVDNFPGQSID 221 (293)
T ss_dssp HHHHHSCSCCHH
T ss_pred HHhCCCCcccHH
Confidence 777664 55664
No 41
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.26 E-value=0.0013 Score=66.15 Aligned_cols=136 Identities=8% Similarity=0.012 Sum_probs=89.5
Q ss_pred hhHHHhhCCCceEEEeCCCcccccccccccC-CCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC-------------
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKS-DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK------------- 74 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~~v~gsl-~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK------------- 74 (555)
...+|+++|..+...++........ ....+ .-.+..++++||+|.++.. ....|...++...
T Consensus 68 a~~ia~~l~~~~~~~sg~~~~~~~~-l~~~~~~~~~~~v~~iDE~~~l~~~---~~e~L~~~~~~~~~~i~~~~~~~~~~ 143 (334)
T 1in4_A 68 AHIIASELQTNIHVTSGPVLVKQGD-MAAILTSLERGDVLFIDEIHRLNKA---VEELLYSAIEDFQIDIMIGKGPSAKS 143 (334)
T ss_dssp HHHHHHHHTCCEEEEETTTCCSHHH-HHHHHHHCCTTCEEEEETGGGCCHH---HHHHHHHHHHTSCCCC----------
T ss_pred HHHHHHHhCCCEEEEechHhcCHHH-HHHHHHHccCCCEEEEcchhhcCHH---HHHHHHHHHHhcccceeeccCccccc
Confidence 4567888887776666543211000 00000 0124579999999999863 2334444443221
Q ss_pred -------CcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 75 -------GPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 75 -------rPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
.-+|..+|.....-+.++++ ..+.|.+++..++...|..++...|+.++++.+..|+..+.||.|.+++.|
T Consensus 144 i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 144 IRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp -----CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 12333344433222234454 468899999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 008751 146 QFW 148 (555)
Q Consensus 146 Qf~ 148 (555)
+..
T Consensus 224 ~~~ 226 (334)
T 1in4_A 224 KRV 226 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 42
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.09 E-value=0.00051 Score=76.29 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=93.4
Q ss_pred hhHHHhhCCCceEEEeCCCccccccccc---c----------------cCCCCCCcEEEEeCCCCCCcccHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSHGVM---G----------------KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQI 69 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~~v~---g----------------sl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~l 69 (555)
...+|+.+|..++.+|.++..++ +.+. | .+....+.+|+|||+|.+.. ..+.+|.++
T Consensus 505 a~~la~~l~~~~~~i~~s~~~~~-~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~---~~~~~Ll~~ 580 (758)
T 1r6b_X 505 TVQLSKALGIELLRFDMSEYMER-HTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---DVFNILLQV 580 (758)
T ss_dssp HHHHHHHHTCEEEEEEGGGCSSS-SCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH---HHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEechhhcch-hhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH---HHHHHHHHH
Confidence 45788888999999999875432 1100 0 01112367999999999865 378889999
Q ss_pred HHHcC-------------CcEEEEecCCCC-------------------------CCcCccce--eEEEecCCCHHHHHH
Q 008751 70 AEKAK-------------GPVILTSNSNNI-------------------------TLPDSLDR--LEVSFTMPMPKDLLS 109 (555)
Q Consensus 70 iekSK-------------rPIILtCND~n~-------------------------~L~~l~~~--l~I~FkrPs~~eI~s 109 (555)
++..+ +-||+|+|.... ..++++++ ..|.|.+|+.+++..
T Consensus 581 le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~ 660 (758)
T 1r6b_X 581 MDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQ 660 (758)
T ss_dssp HHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHH
T ss_pred hcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHH
Confidence 98632 338899987431 12233444 468999999998888
Q ss_pred HHHHHHHHc---------CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHHh
Q 008751 110 HLQMICAAE---------KVELQQHLLVQLIESC---RADIRKTIMHLQFWC 149 (555)
Q Consensus 110 rL~~Ic~kE---------gl~Id~~~L~~Li~~S---~GDIRqaLN~LQf~s 149 (555)
.+...+.+. ++.+++++++.|+... +++.|...+.++...
T Consensus 661 i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 661 VVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 888776532 3578999999999876 555666666655443
No 43
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.08 E-value=0.0018 Score=64.79 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=71.2
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCcccee-EEEecCC
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDRL-EVSFTMP 102 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~l-~I~FkrP 102 (555)
..+|+|||||.|..+ .+..|.++++.. .++||+++|..- ..+ ++++.++ .+.+.-|
T Consensus 97 ~g~L~LDEi~~l~~~---~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lP 173 (304)
T 1ojl_A 97 GGTLFLDEIGDISPL---MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMP 173 (304)
T ss_dssp TSEEEEESCTTCCHH---HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECC
T ss_pred CCEEEEeccccCCHH---HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEecc
Confidence 469999999999764 466777777753 367999999751 011 2233332 3444444
Q ss_pred C----HHHHH----HHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 103 M----PKDLL----SHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 103 s----~~eI~----srL~~Ic~kEg---l~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
+ .+++. .+|..++...| ..++++.++.|..++ .||+|...|.++..+..
T Consensus 174 pL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 174 SLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp CSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 4 23333 34555666555 578999999999987 99999999999976654
No 44
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.06 E-value=0.0019 Score=61.97 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH-------------cCCcEEEEecCCC-------CCCcCcccee-EEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK-------------AKGPVILTSNSNN-------ITLPDSLDRL-EVSFTM 101 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek-------------SKrPIILtCND~n-------~~L~~l~~~l-~I~Fkr 101 (555)
...+|+|||+|.+..+ .+.+|.++++. ..++||+++|..- ..-+++++++ .+.+.-
T Consensus 100 ~~~~l~lDEi~~l~~~---~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~l 176 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM---VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQL 176 (265)
T ss_dssp TTSEEEEESGGGSCHH---HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEEC
T ss_pred CCcEEEEechHhcCHH---HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeC
Confidence 3579999999999764 56778888875 2467999999741 1113344443 334444
Q ss_pred CCH----HHHH----HHHHHHHHHcCC----CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhh
Q 008751 102 PMP----KDLL----SHLQMICAAEKV----ELQQHLLVQLIESC-RADIRKTIMHLQFWCQ 150 (555)
Q Consensus 102 Ps~----~eI~----srL~~Ic~kEgl----~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~ 150 (555)
|+. .++. .+|..++...|. .++++.++.|..+. .||+|+..+.++..+.
T Consensus 177 p~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 177 PPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 443 2333 456667777776 68999999998775 8999999999987654
No 45
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.96 E-value=0.00071 Score=65.75 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=75.9
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHcC----------Cc---EEEEecCC--------------------------
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAK----------GP---VILTSNSN-------------------------- 84 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekSK----------rP---IILtCND~-------------------------- 84 (555)
..+++|||+|.+.. ..+.+|.++++... .+ ||+++|..
T Consensus 120 ~~vl~lDEi~~l~~---~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 196 (311)
T 4fcw_A 120 YSVILFDAIEKAHP---DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQ 196 (311)
T ss_dssp SEEEEEETGGGSCH---HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHH
T ss_pred CeEEEEeChhhcCH---HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHH
Confidence 47999999999965 46788888888632 23 99999982
Q ss_pred CCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q 008751 85 NITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAE---------KVELQQHLLVQLIESCR---ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 85 n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kE---------gl~Id~~~L~~Li~~S~---GDIRqaLN~LQf~s~ 150 (555)
....+.++++ ..+.|.+|+..++...+...+.+. .+.+++++++.|+...- |++|..-+.++..+.
T Consensus 197 ~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 197 QHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 1122334454 478899999888888777765432 45789999999999764 888888888876554
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.92 E-value=0.0024 Score=62.96 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHc---------------CCcEEEEecCCC-CCCcCccce--eEEEecCCCHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA---------------KGPVILTSNSNN-ITLPDSLDR--LEVSFTMPMPK 105 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekS---------------KrPIILtCND~n-~~L~~l~~~--l~I~FkrPs~~ 105 (555)
..+++|||+|.+... .+.+|.++++.. +.-||.++|... ...+.++++ ..+.+..|+..
T Consensus 145 ~~vl~iDEi~~l~~~---~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 145 RGYLYIDECNLLEDH---IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDV 221 (350)
T ss_dssp TEEEEETTGGGSCHH---HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSH
T ss_pred CCEEEEeChhhCCHH---HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcH
Confidence 579999999999764 466888888763 334566667533 233445565 45888888544
Q ss_pred HHH-HHHHH-------------------------H----HHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHh
Q 008751 106 DLL-SHLQM-------------------------I----CAAEKVELQQHLLVQLIESCRA----DIRKTIMHLQFWC 149 (555)
Q Consensus 106 eI~-srL~~-------------------------I----c~kEgl~Id~~~L~~Li~~S~G----DIRqaLN~LQf~s 149 (555)
+.. ..+.. | +..+++.+++++++.|+..+.+ ++|.+++.|+...
T Consensus 222 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~ 299 (350)
T 1g8p_A 222 ETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSAR 299 (350)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 222 22222 2 3445779999999999988776 8999999997543
No 47
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.90 E-value=0.0012 Score=67.00 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=92.3
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-------ccccc-------ccCCCCCCcEEEEeCCCCCCcc--------c---HHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-------SHGVM-------GKSDNHVKPLILIEDVDVFFPE--------D---RGFI 63 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-------n~~v~-------gsl~~~kkkLILiDEVD~Lf~e--------D---rGf~ 63 (555)
..++|+.+|..++.+|++.-... ..... +.+......+|+|||+|.+... | .+.+
T Consensus 89 a~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~ 168 (376)
T 1um8_A 89 AQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQ 168 (376)
T ss_dssp HHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHH
T ss_pred HHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHH
Confidence 45789999999999998762210 00000 0011124689999999999764 1 1278
Q ss_pred HHHHHHHHH-----------------------cCCcEEEEecCCC-----------------------------------
Q 008751 64 AGIQQIAEK-----------------------AKGPVILTSNSNN----------------------------------- 85 (555)
Q Consensus 64 sAL~~liek-----------------------SKrPIILtCND~n----------------------------------- 85 (555)
.+|.++++. +++.+|+++|...
T Consensus 169 ~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~ 248 (376)
T 1um8_A 169 QALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQT 248 (376)
T ss_dssp HHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCH
T ss_pred HHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCH
Confidence 899999883 3345667766200
Q ss_pred ------CCCcCccce--eEEEecCCCHHHHHHHHH----HHHH----H-----cCCCCCHHHHHHHHHHcC---CcHHHH
Q 008751 86 ------ITLPDSLDR--LEVSFTMPMPKDLLSHLQ----MICA----A-----EKVELQQHLLVQLIESCR---ADIRKT 141 (555)
Q Consensus 86 ------~~L~~l~~~--l~I~FkrPs~~eI~srL~----~Ic~----k-----Egl~Id~~~L~~Li~~S~---GDIRqa 141 (555)
...+.++++ ..+.|.+++..++...+. .++. . .++.+++++++.|+..+. |++|..
T Consensus 249 ~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L 328 (376)
T 1um8_A 249 HDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGL 328 (376)
T ss_dssp HHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGH
T ss_pred HHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHH
Confidence 011223333 568999999988888775 2221 1 246789999999999865 999999
Q ss_pred HHHHHHHhhc
Q 008751 142 IMHLQFWCQN 151 (555)
Q Consensus 142 LN~LQf~s~s 151 (555)
.+.|+.....
T Consensus 329 ~~~le~~~~~ 338 (376)
T 1um8_A 329 RAIIEDFCLD 338 (376)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876664
No 48
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0028 Score=67.67 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=89.3
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~li 70 (555)
+...++|+++|.+++.+++++-.++ ...+...+ ....+.+|+|||+|.++.. ++.....+..++
T Consensus 230 llAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 309 (437)
T 4b4t_L 230 LLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELL 309 (437)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHH
Confidence 3456899999999999999884432 00011100 1135789999999988641 333344455554
Q ss_pred HH-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----
Q 008751 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCR---- 135 (555)
Q Consensus 71 ek-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~---- 135 (555)
.. ..+-||.++|.+...=+.++. + ..|.|..|+..+-...|+..+.+..+. ++-.++.|+..+.
T Consensus 310 ~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sG 388 (437)
T 4b4t_L 310 TQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNG 388 (437)
T ss_dssp HHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCH
T ss_pred HHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCH
Confidence 43 245688888987643233332 3 578999999888777776666544332 1223677777655
Q ss_pred CcHHHHHHHHHHHhh
Q 008751 136 ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 136 GDIRqaLN~LQf~s~ 150 (555)
.||+..++.--+.+.
T Consensus 389 ADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 389 ADIRNCATEAGFFAI 403 (437)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 499998876554443
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0024 Score=67.72 Aligned_cols=142 Identities=17% Similarity=0.212 Sum_probs=89.8
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~li 70 (555)
+...++|+++|.+++.+++++-..+ ...+...+ ....+.+|+|||+|.++.. +....+.+.+++
T Consensus 197 llAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 276 (405)
T 4b4t_J 197 LLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL 276 (405)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHH
Confidence 4567999999999999999884432 01111101 1135789999999998641 233344555555
Q ss_pred HH-----c--CCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC---
Q 008751 71 EK-----A--KGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIESCR--- 135 (555)
Q Consensus 71 ek-----S--KrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~-~L~~Li~~S~--- 135 (555)
.. . .+-||.++|.+...=+.++. + ..|.|..|+..+-...|+..+.+.+ ++++ .++.|+..+.
T Consensus 277 ~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 277 NQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN--LTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp HHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB--CCSSCCHHHHHHHCCSCC
T ss_pred HhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHCCCCC
Confidence 43 2 33467788887643233332 3 6899999999887777776665443 3332 3777777655
Q ss_pred -CcHHHHHHHHHHHhh
Q 008751 136 -ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 136 -GDIRqaLN~LQf~s~ 150 (555)
.||+..++.--..+.
T Consensus 355 GADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 355 GADVKGVCTEAGMYAL 370 (405)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 499988876655444
No 50
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.76 E-value=0.0019 Score=64.87 Aligned_cols=106 Identities=9% Similarity=0.167 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCCCcc---cHHHHHHHHHHHHH-------cCCcEEEEecCCCC--CC----cCccc--eeEEEecCCCH
Q 008751 43 VKPLILIEDVDVFFPE---DRGFIAGIQQIAEK-------AKGPVILTSNSNNI--TL----PDSLD--RLEVSFTMPMP 104 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e---DrGf~sAL~~liek-------SKrPIILtCND~n~--~L----~~l~~--~l~I~FkrPs~ 104 (555)
++.+|+|||+|.+... +...+..+.+++.. .+..||+++|+... .+ +.... ...++|.+++.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 4569999999988652 44556666666653 33448888876531 01 11111 12399999999
Q ss_pred HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcC------CcHHHHHHHHHHH
Q 008751 105 KDLLSHLQMICAAEK--VELQQHLLVQLIESCR------ADIRKTIMHLQFW 148 (555)
Q Consensus 105 ~eI~srL~~Ic~kEg--l~Id~~~L~~Li~~S~------GDIRqaLN~LQf~ 148 (555)
.++...+...+...+ ..++++.+..|+..+. |+.|.++..++..
T Consensus 218 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a 269 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMA 269 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 999999987766443 3588999999999999 9999999988754
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.61 E-value=0.00067 Score=67.20 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=89.5
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCccc-----------HHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPED-----------RGFIAGIQQ 68 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~eD-----------rGf~sAL~~ 68 (555)
...++|++++..++.+|+++-..+ ...+.+.+ ....+.+|+|||+|.+.... ...+..+..
T Consensus 65 la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~ 144 (301)
T 3cf0_A 65 LAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 144 (301)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHH
Confidence 345889999999999998763211 00011111 11246799999999875421 123455555
Q ss_pred HHH----HcCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHH-HcCCc
Q 008751 69 IAE----KAKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE--LQQHLLVQLIE-SCRAD 137 (555)
Q Consensus 69 lie----kSKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~--Id~~~L~~Li~-~S~GD 137 (555)
.+. ..++.||.++|.+...-+.++. + ..+.|..|+..+....|...+.+.++. ++...+..... .+++|
T Consensus 145 ~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~d 224 (301)
T 3cf0_A 145 EMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGAD 224 (301)
T ss_dssp HHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHH
T ss_pred HhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHH
Confidence 554 2356788888887543333443 3 578999999999888888888776653 44444433322 24559
Q ss_pred HHHHHHHHHHHhhc
Q 008751 138 IRKTIMHLQFWCQN 151 (555)
Q Consensus 138 IRqaLN~LQf~s~s 151 (555)
|+..+......+..
T Consensus 225 l~~l~~~a~~~a~~ 238 (301)
T 3cf0_A 225 LTEICQRACKLAIR 238 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888776665543
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.55 E-value=0.0048 Score=68.79 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=85.9
Q ss_pred hHHHhhC---CCceEEEeCCCcccccccccccC----CCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc---------
Q 008751 10 CEAAQHA---DDEVVEVIHIPDDENSHGVMGKS----DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--------- 73 (555)
Q Consensus 10 ~~iAkel---Gy~VIELNASDdR~rn~~v~gsl----~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--------- 73 (555)
.++|+.+ +..++.+|.++-.+......+.+ ....+.+|+|||||.+.. ..+..|.++++..
T Consensus 539 ~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~---~~~~~Ll~~le~g~~~~~~g~~ 615 (758)
T 3pxi_A 539 RALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHP---DVFNILLQVLEDGRLTDSKGRT 615 (758)
T ss_dssp HHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCH---HHHHHHHHHHHHSBCC-----C
T ss_pred HHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCH---HHHHHHHHHhccCeEEcCCCCE
Confidence 4566665 78899999988554211111211 113467999999998854 4778888888862
Q ss_pred ----CCcEEEEecCCCC------------CCcCccce--eEEEecCCCHHHHHHHHHHHHHH---------cCCCCCHHH
Q 008751 74 ----KGPVILTSNSNNI------------TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAA---------EKVELQQHL 126 (555)
Q Consensus 74 ----KrPIILtCND~n~------------~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~k---------Egl~Id~~~ 126 (555)
++.||+++|.... ..+.++.+ ..|.|.+|+..++...+...+.. .++.+++++
T Consensus 616 ~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a 695 (758)
T 3pxi_A 616 VDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAA 695 (758)
T ss_dssp CBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHH
T ss_pred eccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHH
Confidence 3578999985432 22334454 48999999999888887776543 245789999
Q ss_pred HHHHHHH---cCCcHHHHHHHHH
Q 008751 127 LVQLIES---CRADIRKTIMHLQ 146 (555)
Q Consensus 127 L~~Li~~---S~GDIRqaLN~LQ 146 (555)
++.|+.. ..+.+|..-+.++
T Consensus 696 ~~~l~~~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 696 KAKVAEEGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp HHHHHGGGCCTTTTTTTHHHHHH
T ss_pred HHHHHHhCCCCCCCChHHHHHHH
Confidence 9999874 2344444444444
No 53
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.42 E-value=0.0023 Score=69.26 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=88.8
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-------cccc---ccc----C--CCCCCcEEEEeCCCCCCcccHH-HHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-------SHGV---MGK----S--DNHVKPLILIEDVDVFFPEDRG-FIAGIQQIAE 71 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-------n~~v---~gs----l--~~~kkkLILiDEVD~Lf~eDrG-f~sAL~~lie 71 (555)
...+|+.++...+++|.+..... ...+ .+. + ......+++|||+|.+....+| .+.+|.+++.
T Consensus 125 ar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld 204 (543)
T 3m6a_A 125 AKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLD 204 (543)
T ss_dssp HHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTC
T ss_pred HHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHh
Confidence 45788888999999998763210 0000 000 0 1113459999999999875322 3456666664
Q ss_pred H-----------------cCCcEEEEecCCCCCCcCccce-eEEEecCCCHHHHHHHHHHHH-----HHc-----CCCCC
Q 008751 72 K-----------------AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMIC-----AAE-----KVELQ 123 (555)
Q Consensus 72 k-----------------SKrPIILtCND~n~~L~~l~~~-l~I~FkrPs~~eI~srL~~Ic-----~kE-----gl~Id 123 (555)
. .++.||+|+|.....-++++++ ..|.|..|+..+....+.... ... ++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~ 284 (543)
T 3m6a_A 205 PEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLR 284 (543)
T ss_dssp TTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEEC
T ss_pred hhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCC
Confidence 2 3456888889887544556664 578999999988877777654 222 45779
Q ss_pred HHHHHHHHHHcC--CcHHHHHHHHHHHhh
Q 008751 124 QHLLVQLIESCR--ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 124 ~~~L~~Li~~S~--GDIRqaLN~LQf~s~ 150 (555)
++.+..|+..+. +.+|..-+.++..+.
T Consensus 285 ~~~l~~l~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 285 DQAILDIIRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp HHHHHHHHHHHCCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhhchhHHHHHHHHHHH
Confidence 999999988554 677777666665554
No 54
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.011 Score=62.95 Aligned_cols=141 Identities=13% Similarity=0.183 Sum_probs=87.5
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~li 70 (555)
+...++|+++|..++.+++++-..+ ...+...+ ....+.+|+|||+|.++.. ++.....+..++
T Consensus 230 llAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL 309 (434)
T 4b4t_M 230 LLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELL 309 (434)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHH
Confidence 4467999999999999999884322 00111000 1125689999999987531 222333445555
Q ss_pred HH-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC---
Q 008751 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIESCR--- 135 (555)
Q Consensus 71 ek-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~-~L~~Li~~S~--- 135 (555)
.. .++-||.++|.+...=+.++. + ..|.|..|+..+-...|+..+.+..+ +++ .++.|+..+.
T Consensus 310 ~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~s 387 (434)
T 4b4t_M 310 NQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFN 387 (434)
T ss_dssp HHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCC
T ss_pred HHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCC
Confidence 43 234467788887643233333 3 57999999998877777776666443 222 2667777654
Q ss_pred -CcHHHHHHHHHHHh
Q 008751 136 -ADIRKTIMHLQFWC 149 (555)
Q Consensus 136 -GDIRqaLN~LQf~s 149 (555)
.||+..++.--..+
T Consensus 388 GADi~~l~~eA~~~a 402 (434)
T 4b4t_M 388 GAQLKAVTVEAGMIA 402 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 49999887654443
No 55
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.36 E-value=0.023 Score=56.19 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=87.7
Q ss_pred hhHHHhhCCCceEEEeCCCccc------c---c------ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc
Q 008751 9 LCEAAQHADDEVVEVIHIPDDE------N---S------HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA 73 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~------r---n------~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS 73 (555)
...+|+.++..++.++.+.+.. . . ....+.+ ...+++|||+|.+... .+.+|.+.++..
T Consensus 63 a~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~---~~~~Ll~~l~~~ 136 (331)
T 2r44_A 63 VNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAK---VQSALLECMQEK 136 (331)
T ss_dssp HHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHH---HHHHHHHHHHHS
T ss_pred HHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHH---HHHHHHHHHhcC
Confidence 4578899999999999853211 0 0 0011111 1369999999998654 567788888752
Q ss_pred -----------CCc--EEEEecCCC-----CCCcCccce--eEEEecCCCHHHHHHHHHHHHHH----------------
Q 008751 74 -----------KGP--VILTSNSNN-----ITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAA---------------- 117 (555)
Q Consensus 74 -----------KrP--IILtCND~n-----~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~k---------------- 117 (555)
..+ ||.++|... ..-+.++++ ..+.|..|+..+....|...+..
T Consensus 137 ~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~ 216 (331)
T 2r44_A 137 QVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVL 216 (331)
T ss_dssp EEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHH
T ss_pred ceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHH
Confidence 122 343445322 112334565 46899999999998888877654
Q ss_pred ------cCCCCCHHHHHHHHHHc-----CC---------------cHHHHHHHHHHH
Q 008751 118 ------EKVELQQHLLVQLIESC-----RA---------------DIRKTIMHLQFW 148 (555)
Q Consensus 118 ------Egl~Id~~~L~~Li~~S-----~G---------------DIRqaLN~LQf~ 148 (555)
.++.+++++++.|+... .+ ..|++++.++..
T Consensus 217 ~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a 273 (331)
T 2r44_A 217 EIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVA 273 (331)
T ss_dssp HHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHH
Confidence 37889999999887653 23 589998888764
No 56
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.006 Score=65.29 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=89.1
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~li 70 (555)
+...++|+++|.+++.+++++-..+ ...+...+ ....+.+|+|||+|.++.. ++.....+..++
T Consensus 231 lLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL 310 (437)
T 4b4t_I 231 LLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL 310 (437)
T ss_dssp HHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHH
Confidence 4567999999999999999884332 00111000 1135689999999988642 222344455554
Q ss_pred HH-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc----
Q 008751 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIESC---- 134 (555)
Q Consensus 71 ek-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~-~L~~Li~~S---- 134 (555)
.. ..+=||.++|.+...=+.++. + ..|.|..|+..+-...|+..+.+. .++++ .++.|+..+
T Consensus 311 ~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~--~l~~dvdl~~LA~~T~GfS 388 (437)
T 4b4t_I 311 NQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM--NLSEDVNLETLVTTKDDLS 388 (437)
T ss_dssp HHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS--CBCSCCCHHHHHHHCCSCC
T ss_pred HHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC--CCCCcCCHHHHHHhCCCCC
Confidence 42 223477788887643333432 3 568999999888777777666543 34332 367777664
Q ss_pred CCcHHHHHHHHHHHhhc
Q 008751 135 RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 135 ~GDIRqaLN~LQf~s~s 151 (555)
+.||+..++.--..+..
T Consensus 389 GADI~~l~~eA~~~Air 405 (437)
T 4b4t_I 389 GADIQAMCTEAGLLALR 405 (437)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45999888776555543
No 57
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.29 E-value=0.0076 Score=57.49 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=82.9
Q ss_pred hhHHHhhCCCceEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCCccc-----------HHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPED-----------RGFIAGIQQI 69 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn-----~~v~gsl---~~~kkkLILiDEVD~Lf~eD-----------rGf~sAL~~l 69 (555)
..++|++++..++.++.++-.... ......+ ....+.+++|||+|.+.... ...+..+...
T Consensus 62 a~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 141 (257)
T 1lv7_A 62 AKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE 141 (257)
T ss_dssp HHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHH
Confidence 457888999999999998733210 0000000 11245699999999776421 1122333333
Q ss_pred HHH----cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC----
Q 008751 70 AEK----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA---- 136 (555)
Q Consensus 70 iek----SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~-L~~Li~~S~G---- 136 (555)
+.. .++.||.++|.+...-+.++. + ..+.|..|+..+-...|...+.+ +.+.++. +..++..+.|
T Consensus 142 l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~--~~l~~~~~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 142 MDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGA 219 (257)
T ss_dssp HHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHH
T ss_pred hhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc--CCCCccccHHHHHHHcCCCCHH
Confidence 332 234577788887543333433 2 57889999998887777766654 4444333 5667777777
Q ss_pred cHHHHHHHHHHHhhc
Q 008751 137 DIRKTIMHLQFWCQN 151 (555)
Q Consensus 137 DIRqaLN~LQf~s~s 151 (555)
||+..+...-.++..
T Consensus 220 dl~~l~~~a~~~a~~ 234 (257)
T 1lv7_A 220 DLANLVNEAALFAAR 234 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666655555543
No 58
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.015 Score=62.74 Aligned_cols=141 Identities=13% Similarity=0.187 Sum_probs=86.6
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~li 70 (555)
+...++|+++|..++.+++++-.++ ...+...+ ....+.+|+|||+|.++.. +......+..++
T Consensus 258 lLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 337 (467)
T 4b4t_H 258 LCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELI 337 (467)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHH
Confidence 4567999999999999999884322 00111100 1135789999999998742 222333444444
Q ss_pred HH-------cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC--
Q 008751 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIESCRA-- 136 (555)
Q Consensus 71 ek-------SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~-~L~~Li~~S~G-- 136 (555)
.. ..+-||.++|.+...=+.++. + ..|.|..|+..+-...|+..+.+. .++.+ .++.|+..+.|
T Consensus 338 ~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~--~l~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 338 TQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM--SVERGIRWELISRLCPNST 415 (467)
T ss_dssp HHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS--CBCSSCCHHHHHHHCCSCC
T ss_pred HHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC--CCCCCCCHHHHHHHCCCCC
Confidence 42 233467777877643233332 3 678999999888777777666543 33322 36667776554
Q ss_pred --cHHHHHHHHHHHh
Q 008751 137 --DIRKTIMHLQFWC 149 (555)
Q Consensus 137 --DIRqaLN~LQf~s 149 (555)
||+..++.--..+
T Consensus 416 GADI~~l~~eAa~~A 430 (467)
T 4b4t_H 416 GAELRSVCTEAGMFA 430 (467)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 9998887654444
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.02 E-value=0.00051 Score=65.76 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=82.9
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcccH-H-----------HHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPEDR-G-----------FIAGIQQ 68 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~eDr-G-----------f~sAL~~ 68 (555)
..++|++++..++.+++++-... .......+ ....+.+|+|||+|.+..... | .+..+..
T Consensus 61 a~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~ 140 (268)
T 2r62_A 61 AKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLA 140 (268)
T ss_dssp HHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTT
T ss_pred HHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHH
Confidence 45788999999999998873321 00011111 112458999999999976421 1 1122222
Q ss_pred HHHH-----cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC---
Q 008751 69 IAEK-----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA--- 136 (555)
Q Consensus 69 liek-----SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G--- 136 (555)
.+.. .++.||.++|.....-+.++. + ..+.|..|+..+....|...+...++. ++..++.|+..+.|
T Consensus 141 ~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g 219 (268)
T 2r62_A 141 EMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAG 219 (268)
T ss_dssp TTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCH
T ss_pred HhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCH
Confidence 2221 123466666766532233333 2 578999999999988888777543332 12225556655544
Q ss_pred -cHHHHHHHHHHHhhc
Q 008751 137 -DIRKTIMHLQFWCQN 151 (555)
Q Consensus 137 -DIRqaLN~LQf~s~s 151 (555)
|||.+++....++..
T Consensus 220 ~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 220 ADLANIINEAALLAGR 235 (268)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 999988888776654
No 60
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0065 Score=64.63 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=86.1
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCc--------ccHHHHHHHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFP--------EDRGFIAGIQQIA 70 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~--------eDrGf~sAL~~li 70 (555)
+...++|+++|..++.+++++-..+ ...+...| ....+.+|+|||+|.++. +++...+.+.+++
T Consensus 221 ~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL 300 (428)
T 4b4t_K 221 MLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELL 300 (428)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHH
Confidence 3456899999999999999884432 00111101 113578999999997643 1333334444444
Q ss_pred HH-------cCCcEEEEecCCCCCCcCccc--e--eEEEec-CCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC--
Q 008751 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFT-MPMPKDLLSHLQMICAAEKVELQQH-LLVQLIESCR-- 135 (555)
Q Consensus 71 ek-------SKrPIILtCND~n~~L~~l~~--~--l~I~Fk-rPs~~eI~srL~~Ic~kEgl~Id~~-~L~~Li~~S~-- 135 (555)
.. ..+-||.++|.+...=+.++. + ..|.|. .|+..+-...|...+.+.+ +.++ .++.|+..+.
T Consensus 301 ~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 301 TQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDSL 378 (428)
T ss_dssp HHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTTC
T ss_pred HHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCCC
Confidence 32 234578888887643333432 3 468884 6787776677776665544 3332 3677777654
Q ss_pred --CcHHHHHHHHHHHhh
Q 008751 136 --ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 136 --GDIRqaLN~LQf~s~ 150 (555)
.||+..++.--..+.
T Consensus 379 sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 379 SGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 499988876544443
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.75 E-value=0.0039 Score=66.96 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=85.5
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~lie 71 (555)
...++|++++..++.+|+++-.+. .....+.+ ...++.+|+|||+|.+... .+..+..|.+++.
T Consensus 254 lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (489)
T ss_dssp HHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh
Confidence 346789999999999998763321 00011111 1134579999999988652 2345666777776
Q ss_pred H----cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Q 008751 72 K----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIM 143 (555)
Q Consensus 72 k----SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN 143 (555)
. .++.||.++|.....-+.++. + ..|.|..|+..+....|+..+...++.. +..+..++..+.|-..+.|.
T Consensus 334 ~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADLA 412 (489)
T ss_dssp HSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHHHHHTCTTCCHHHHH
T ss_pred ccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHccCCcHHHHH
Confidence 4 234567777776433333443 2 5799999999999888887766544432 22467777777664444443
Q ss_pred HH
Q 008751 144 HL 145 (555)
Q Consensus 144 ~L 145 (555)
.|
T Consensus 413 ~L 414 (489)
T 3hu3_A 413 AL 414 (489)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.69 E-value=0.038 Score=62.64 Aligned_cols=134 Identities=10% Similarity=0.059 Sum_probs=79.8
Q ss_pred CCceEEEeCCCccccc----------ccccccC-CCCCCcEEEEeCCCCCCcc--c---HHHHHHHHHHHHHcCCcEEEE
Q 008751 17 DDEVVEVIHIPDDENS----------HGVMGKS-DNHVKPLILIEDVDVFFPE--D---RGFIAGIQQIAEKAKGPVILT 80 (555)
Q Consensus 17 Gy~VIELNASDdR~rn----------~~v~gsl-~~~kkkLILiDEVD~Lf~e--D---rGf~sAL~~liekSKrPIILt 80 (555)
|..++.++.++-.... ..+.... ...++.+|+|||+|.+... . ......|..++...+.++|.+
T Consensus 226 ~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~a 305 (854)
T 1qvr_A 226 GKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGA 305 (854)
T ss_dssp TCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEE
T ss_pred CCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEe
Confidence 8999999987632100 0000000 1124579999999998742 1 223446788888888899999
Q ss_pred ecCCC----CCCcCccce-eEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCc------HHHHHHHH
Q 008751 81 SNSNN----ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICA----AEKVELQQHLLVQLIESCRAD------IRKTIMHL 145 (555)
Q Consensus 81 CND~n----~~L~~l~~~-l~I~FkrPs~~eI~srL~~Ic~----kEgl~Id~~~L~~Li~~S~GD------IRqaLN~L 145 (555)
+|... ..-+.+.++ ..|.|..|+..+....|+.++. ..++.++++.+..++..+.+. .++++..+
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ll 385 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLI 385 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHH
Confidence 98642 111233343 4599999999999999987765 458999999999998877544 56777777
Q ss_pred HHHhh
Q 008751 146 QFWCQ 150 (555)
Q Consensus 146 Qf~s~ 150 (555)
...+.
T Consensus 386 dea~a 390 (854)
T 1qvr_A 386 DEAAA 390 (854)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 63
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.51 E-value=0.0082 Score=60.62 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=87.6
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-------ccccc-------ccCCCCCCcEEEEeCCCCCCcc-----------cHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-------SHGVM-------GKSDNHVKPLILIEDVDVFFPE-----------DRGF 62 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-------n~~v~-------gsl~~~kkkLILiDEVD~Lf~e-----------DrGf 62 (555)
...++|+.+|..++++|+++-... ..... +.+....+.+|+|||+|.+... .++.
T Consensus 67 la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~ 146 (363)
T 3hws_A 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGV 146 (363)
T ss_dssp HHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHH
T ss_pred HHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHH
Confidence 346889999999999999762210 00000 0011113569999999987653 1237
Q ss_pred HHHHHHHHH-----------------------HcCCcEEEEecCC----------CC-----------------------
Q 008751 63 IAGIQQIAE-----------------------KAKGPVILTSNSN----------NI----------------------- 86 (555)
Q Consensus 63 ~sAL~~lie-----------------------kSKrPIILtCND~----------n~----------------------- 86 (555)
+.+|.++++ .+++++|+++|.. ..
T Consensus 147 ~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~ 226 (363)
T 3hws_A 147 QQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELL 226 (363)
T ss_dssp HHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHH
T ss_pred HHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHH
Confidence 888888887 1456677777742 00
Q ss_pred ------------CCcCccce--eEEEecCCCHHHHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHH---cCC
Q 008751 87 ------------TLPDSLDR--LEVSFTMPMPKDLLSHLQM----IC-------AAEK--VELQQHLLVQLIES---CRA 136 (555)
Q Consensus 87 ------------~L~~l~~~--l~I~FkrPs~~eI~srL~~----Ic-------~kEg--l~Id~~~L~~Li~~---S~G 136 (555)
..+.++.+ ..+.|.+|+.+++...+.. +. ...+ +.+++++++.|+.. .++
T Consensus 227 ~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~ 306 (363)
T 3hws_A 227 AQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 306 (363)
T ss_dssp HTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCcc
Confidence 12333444 4567899998887666654 22 2224 45799999999864 345
Q ss_pred cHHHHHHHHHHHhh
Q 008751 137 DIRKTIMHLQFWCQ 150 (555)
Q Consensus 137 DIRqaLN~LQf~s~ 150 (555)
..|..-|.++-...
T Consensus 307 gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 307 GARGLRSIVEAALL 320 (363)
T ss_dssp TTTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 55666555555443
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.34 E-value=0.0083 Score=68.00 Aligned_cols=139 Identities=18% Similarity=0.142 Sum_probs=90.3
Q ss_pred hhHHHhhC---CCceEEEeCCCcccc---cccc-----------cccCC----CCCCcEEEEeCCCCCCcccHHHHHHHH
Q 008751 9 LCEAAQHA---DDEVVEVIHIPDDEN---SHGV-----------MGKSD----NHVKPLILIEDVDVFFPEDRGFIAGIQ 67 (555)
Q Consensus 9 ~~~iAkel---Gy~VIELNASDdR~r---n~~v-----------~gsl~----~~kkkLILiDEVD~Lf~eDrGf~sAL~ 67 (555)
..++|+.+ +..++.+|.+.-... .... .+.++ .....+|||||||.+.. ..+..|.
T Consensus 605 A~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~---~~~~~Ll 681 (854)
T 1qvr_A 605 AKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP---DVFNILL 681 (854)
T ss_dssp HHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH---HHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCH---HHHHHHH
Confidence 34666666 788999999874332 0000 01111 12357999999998854 4678888
Q ss_pred HHHHHc-------------CCcEEEEecCC--------------------------CCCCcCccce--eEEEecCCCHHH
Q 008751 68 QIAEKA-------------KGPVILTSNSN--------------------------NITLPDSLDR--LEVSFTMPMPKD 106 (555)
Q Consensus 68 ~liekS-------------KrPIILtCND~--------------------------n~~L~~l~~~--l~I~FkrPs~~e 106 (555)
++++.. ++.||+|+|-. ...-+.++.+ ..+.|.+|+..+
T Consensus 682 ~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~ed 761 (854)
T 1qvr_A 682 QILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQ 761 (854)
T ss_dssp HHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHH
T ss_pred HHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHH
Confidence 888753 22388998851 1112234444 467888899888
Q ss_pred HHHHHHHHHH----Hc-----CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q 008751 107 LLSHLQMICA----AE-----KVELQQHLLVQLIESCR---ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 107 I~srL~~Ic~----kE-----gl~Id~~~L~~Li~~S~---GDIRqaLN~LQf~s~ 150 (555)
+...+...+. +- ++.+++++++.|+..+. |++|..-+.+|....
T Consensus 762 i~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 762 IRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 8777665543 11 35689999999999765 888888877776543
No 65
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.08 E-value=0.013 Score=66.87 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=83.9
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~li 70 (555)
+...++|+++|..++++|+++-.++ .......+ ....+.+|+|||+|.++.. .+.....|...|
T Consensus 253 ~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~m 332 (806)
T 3cf2_A 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 332 (806)
T ss_dssp HHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHH
T ss_pred HHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHH
Confidence 3457899999999999999873321 00011100 1235789999999999742 233444555555
Q ss_pred HH----cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHc----CCc
Q 008751 71 EK----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQ-HLLVQLIESC----RAD 137 (555)
Q Consensus 71 ek----SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~-~~L~~Li~~S----~GD 137 (555)
.. ..+.||.+||.+...=+.++. + ..|.|..|+..+=...|+..+.. +.+.. -.+..|+..+ ..|
T Consensus 333 dg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~--~~~~~dvdl~~lA~~T~GfsgaD 410 (806)
T 3cf2_A 333 DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGAD 410 (806)
T ss_dssp HHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS--SEECTTCCHHHHHHHCCSCCHHH
T ss_pred hcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC--CCCCcccCHHHHHHhcCCCCHHH
Confidence 43 456788888988643333443 3 57899999987766666654433 33222 2366677654 457
Q ss_pred HHHHHHHH
Q 008751 138 IRKTIMHL 145 (555)
Q Consensus 138 IRqaLN~L 145 (555)
|+..++.-
T Consensus 411 L~~Lv~eA 418 (806)
T 3cf2_A 411 LAALCSEA 418 (806)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665543
No 66
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.07 E-value=0.2 Score=48.50 Aligned_cols=99 Identities=9% Similarity=0.001 Sum_probs=75.2
Q ss_pred CcEEEEeCCCCCCc----ccHHHHHHHHHHHHH-cCCcEEEEecCCC---------CCCcCccce--eEEEecCCCHHHH
Q 008751 44 KPLILIEDVDVFFP----EDRGFIAGIQQIAEK-AKGPVILTSNSNN---------ITLPDSLDR--LEVSFTMPMPKDL 107 (555)
Q Consensus 44 kkLILiDEVD~Lf~----eDrGf~sAL~~liek-SKrPIILtCND~n---------~~L~~l~~~--l~I~FkrPs~~eI 107 (555)
+.+|+|||++.+.. .+..++..|..++.. .+..+|+|..... ....++..+ ..+++.+.+..++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~ 208 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTS 208 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHH
Confidence 67999999999875 356788888888776 3567888875421 111112222 4789999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Q 008751 108 LSHLQMICAAEKVELQQHLLVQLIESCRADIRKTI 142 (555)
Q Consensus 108 ~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaL 142 (555)
...+.......|..++++.+..++..++|..+..-
T Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~ 243 (350)
T 2qen_A 209 VEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLV 243 (350)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 99999888778889999999999999999987543
No 67
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.03 E-value=0.062 Score=57.76 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=83.9
Q ss_pred chhHHHhhCCCceEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCCcccH--------HHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPEDR--------GFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~rn-----~~v~gsl---~~~kkkLILiDEVD~Lf~eDr--------Gf~sAL~~lie 71 (555)
...++|++.|..++.+|+++-...- ..+...+ ....+.+|+|||+|.+..... .....+.+++.
T Consensus 65 Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~ 144 (476)
T 2ce7_A 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV 144 (476)
T ss_dssp HHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH
Confidence 3457899999999999998743210 0000000 113567999999999865311 11223444443
Q ss_pred -------HcCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC---
Q 008751 72 -------KAKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA--- 136 (555)
Q Consensus 72 -------kSKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~-L~~Li~~S~G--- 136 (555)
...+.||.++|.+...-+.++. + ..|.|..|+..+-...|+..+.+ ..+.++. +..|+..+.|
T Consensus 145 ~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~--~~l~~~v~l~~la~~t~G~sg 222 (476)
T 2ce7_A 145 EMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN--KPLAEDVNLEIIAKRTPGFVG 222 (476)
T ss_dssp HHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCH
T ss_pred HHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh--CCCcchhhHHHHHHhcCCCcH
Confidence 2345677778876432223332 3 47889999988877777665544 3343333 6777777655
Q ss_pred -cHHHHHHHHHHHhhc
Q 008751 137 -DIRKTIMHLQFWCQN 151 (555)
Q Consensus 137 -DIRqaLN~LQf~s~s 151 (555)
||+..++..-.++..
T Consensus 223 adL~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 223 ADLENLVNEAALLAAR 238 (476)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 667777666555543
No 68
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.81 E-value=0.0055 Score=53.60 Aligned_cols=69 Identities=9% Similarity=0.062 Sum_probs=49.4
Q ss_pred CCcEEEEeCCCCCCcc-----cHHHHHHHHHHHHHcCCcEEEEecCCC-----CCCcCccce-eEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE-----DRGFIAGIQQIAEKAKGPVILTSNSNN-----ITLPDSLDR-LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e-----DrGf~sAL~~liekSKrPIILtCND~n-----~~L~~l~~~-l~I~FkrPs~~eI~srL 111 (555)
++.+|+|||+|.+... +......+..+++..+..+|+++|... ..-+.++++ ..+.|..|+..+....|
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 115 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 4569999999999642 233466778888888899999998753 222344454 47999999988876543
No 69
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.47 E-value=0.049 Score=54.67 Aligned_cols=102 Identities=18% Similarity=0.117 Sum_probs=62.8
Q ss_pred hHHHhhCCCceEEEeCCCcccccccccccCCC-CCCcEEEEeCCCCCCcccHHHHHHHHHHHH--------H-------c
Q 008751 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDN-HVKPLILIEDVDVFFPEDRGFIAGIQQIAE--------K-------A 73 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~rn~~v~gsl~~-~kkkLILiDEVD~Lf~eDrGf~sAL~~lie--------k-------S 73 (555)
.++|+.++. .-++|.++ ++. .+.. ..++++|.||+... .+ ...+++.++. + .
T Consensus 122 ~ala~~~~l-~G~vn~~~----~~f---~l~~~~~k~i~l~Ee~~~~-~d---~~~~lr~i~~G~~~~id~K~k~~~~v~ 189 (267)
T 1u0j_A 122 EAIAHTVPF-YGCVNWTN----ENF---PFNDCVDKMVIWWEEGKMT-AK---VVESAKAILGGSKVRVDQKCKSSAQID 189 (267)
T ss_dssp HHHHHHSSC-EEECCTTC----SSC---TTGGGSSCSEEEECSCCEE-TT---THHHHHHHHTTCCEEC------CCEEC
T ss_pred HHHHhhhcc-cceeeccc----ccc---ccccccccEEEEeccccch-hH---HHHHHHHHhCCCcEEEecCcCCccccc
Confidence 467887655 34556643 122 1222 23456666665544 32 2345666666 4 3
Q ss_pred CCcEEEEecCC-C----------CCCcCccc-eeEEEec--------CCCHHHHHHHHHHHHHHcCCCCCH
Q 008751 74 KGPVILTSNSN-N----------ITLPDSLD-RLEVSFT--------MPMPKDLLSHLQMICAAEKVELQQ 124 (555)
Q Consensus 74 KrPIILtCND~-n----------~~L~~l~~-~l~I~Fk--------rPs~~eI~srL~~Ic~kEgl~Id~ 124 (555)
+.|+|+|||.. . ...+.+.+ +..|+|. +.+..++.+++..+ ..|++.+++
T Consensus 190 ~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~ 259 (267)
T 1u0j_A 190 PTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVEH 259 (267)
T ss_dssp CCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred CCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence 57999999982 1 22233445 4788998 78899999999977 888887653
No 70
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.35 E-value=0.21 Score=51.25 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=71.5
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCccce---eEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDR---LEVSF 99 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~---l~I~F 99 (555)
....+++|||+.|... .+..|.++++.. .++||.++|..- ..+ ++++.+ ..|.+
T Consensus 222 ~~gtlfldei~~l~~~---~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~l 298 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQR---VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYL 298 (368)
T ss_dssp TTSEEEEETGGGSCHH---HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEEC
T ss_pred CCCeEEecChhhCCHH---HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeC
Confidence 3468999999999764 577888888753 356899988641 111 123322 34444
Q ss_pred cCCCH--HHH----HHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 100 TMPMP--KDL----LSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 100 krPs~--~eI----~srL~~Ic~kEgl---~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
.+... ++| ..+|...+.+.|. .++++.++.|..+. .|++|+..|.++..+..
T Consensus 299 PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 299 PPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp CCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred CChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 33332 233 4445566666554 58999999999887 99999999999976654
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.22 E-value=0.073 Score=59.05 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCCCc------ccHHHHHHHHHHHHHcCCcEEEEecCCC--CC--C-cCccce-eEEEecCCCHHHHHHH
Q 008751 43 VKPLILIEDVDVFFP------EDRGFIAGIQQIAEKAKGPVILTSNSNN--IT--L-PDSLDR-LEVSFTMPMPKDLLSH 110 (555)
Q Consensus 43 kkkLILiDEVD~Lf~------eDrGf~sAL~~liekSKrPIILtCND~n--~~--L-~~l~~~-l~I~FkrPs~~eI~sr 110 (555)
++.+++|||+|.+.. +.......|..+++..+..+|.++|... .. + +.+..+ ..+.|..|+..+....
T Consensus 278 ~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~i 357 (758)
T 1r6b_X 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQI 357 (758)
T ss_dssp SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHH
T ss_pred CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHH
Confidence 457999999999953 2223344555566666778888888631 11 1 224443 4699999999999999
Q ss_pred HHHHHHH----cCCCCCHHHHHHHHHHcCCcH------HHHHHHHHHHh
Q 008751 111 LQMICAA----EKVELQQHLLVQLIESCRADI------RKTIMHLQFWC 149 (555)
Q Consensus 111 L~~Ic~k----Egl~Id~~~L~~Li~~S~GDI------RqaLN~LQf~s 149 (555)
|..++.. .++.++++.+..++..+.+.+ ++++..+...+
T Consensus 358 l~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~ 406 (758)
T 1r6b_X 358 INGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG 406 (758)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHH
Confidence 9888765 789999999999988765532 25665554433
No 72
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.31 E-value=0.037 Score=58.60 Aligned_cols=127 Identities=11% Similarity=0.054 Sum_probs=78.6
Q ss_pred CCceEEEeCCCc-cc----ccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCC-----C
Q 008751 17 DDEVVEVIHIPD-DE----NSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN-----I 86 (555)
Q Consensus 17 Gy~VIELNASDd-R~----rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n-----~ 86 (555)
|..++++|++.. ++ +...+.......++.+++|| +.......|..+++.....+|.++|... .
T Consensus 236 ~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-------~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 236 DKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-------AAIDASNILKPSLARGELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp SCCEECC----------CTTHHHHHHHHHTCCCCEEEEC-------C--------CCCTTSSSCEEEEECCTTTTHHHHT
T ss_pred CCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-------CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhh
Confidence 888999998721 11 00001111111245688888 2222445566667667778888888764 1
Q ss_pred CCcCccce-eEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHhh
Q 008751 87 TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAA----EKVELQQHLLVQLIESCRADIR------KTIMHLQFWCQ 150 (555)
Q Consensus 87 ~L~~l~~~-l~I~FkrPs~~eI~srL~~Ic~k----Egl~Id~~~L~~Li~~S~GDIR------qaLN~LQf~s~ 150 (555)
..+.++++ ..|.|..|+..++...|+.++.+ .|+.++++.+..++..+.+.++ ++|..|+..+.
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 22334444 57999999999999999998876 8899999999999988776654 68888876553
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.55 E-value=0.26 Score=53.31 Aligned_cols=141 Identities=15% Similarity=0.148 Sum_probs=82.2
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccCCC---CCCcEEEEeCCCCCCcc--------cHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKSDN---HVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl~~---~kkkLILiDEVD~Lf~e--------DrGf~sAL~~lie 71 (555)
...++|++.+..++.+|+++-... ...+...+.. ..+.+++|||+|.+... .......+.+++.
T Consensus 80 LaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 159 (499)
T ss_dssp HHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence 345789999999999999873221 0011111111 23579999999987531 1223445566654
Q ss_pred H-----cCCc--EEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC---
Q 008751 72 K-----AKGP--VILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA--- 136 (555)
Q Consensus 72 k-----SKrP--IILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~-L~~Li~~S~G--- 136 (555)
. .+.. +|.++|.+...-+.++. + ..|.|..|+..+....|...+ .++.++++. +..|+..+.|
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~--~~~~l~~dv~l~~lA~~t~G~~g 237 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA--RGKPLAEDVDLALLAKRTPGFVG 237 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT--SSSCCCCSSTTHHHHTTSCSCCH
T ss_pred HhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH--hcCCCChHHHHHHHHHhcCCCCH
Confidence 3 1233 33344544321122332 2 588999999987777665443 356666544 7777777765
Q ss_pred -cHHHHHHHHHHHhh
Q 008751 137 -DIRKTIMHLQFWCQ 150 (555)
Q Consensus 137 -DIRqaLN~LQf~s~ 150 (555)
||+.+++..-.++.
T Consensus 238 adL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 238 ADLENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 66677766655543
No 74
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.47 E-value=0.64 Score=47.90 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=70.7
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------C-CCcCccce-eEEEecCC
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------I-TLPDSLDR-LEVSFTMP 102 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~-~L~~l~~~-l~I~FkrP 102 (555)
...++||||+.|..+ .+..|.++++.. .++||.++|..- . .-++++.+ ..+.+.-|
T Consensus 232 ~gtlfldei~~l~~~---~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lP 308 (387)
T 1ny5_A 232 GGTLFLDEIGELSLE---AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIP 308 (387)
T ss_dssp TSEEEEESGGGCCHH---HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECC
T ss_pred CcEEEEcChhhCCHH---HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCC
Confidence 569999999999764 567888888752 456898888631 1 11122222 23444445
Q ss_pred CH----HHH----HHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 103 MP----KDL----LSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 103 s~----~eI----~srL~~Ic~kEgl---~Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
+. ++| ..+|...+.+.|. .++++.++.|..+. .|++|..-|.++..+..
T Consensus 309 pLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 309 PLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred cchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 53 222 4455666766664 37899999999776 89999999999976653
No 75
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.32 E-value=0.16 Score=55.46 Aligned_cols=103 Identities=10% Similarity=0.127 Sum_probs=70.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-----------------------CCcEEEEecCC--CCCCcCccce---
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-----------------------KGPVILTSNSN--NITLPDSLDR--- 94 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-----------------------KrPIILtCND~--n~~L~~l~~~--- 94 (555)
...+++|||+|.|. ...|.+|.++++.. ...||+++|.. ....++++++
T Consensus 201 ~~gvL~LDEi~~l~---~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v 277 (604)
T 3k1j_A 201 HKGVLFIDEIATLS---LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRG 277 (604)
T ss_dssp TTSEEEETTGGGSC---HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHH
T ss_pred CCCEEEEechhhCC---HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhc
Confidence 45699999999985 45788999999842 12388888864 2233445554
Q ss_pred --eEEEecCC---CHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHc---CC-------cHHHHHHHHHHH
Q 008751 95 --LEVSFTMP---MPKDLLSHLQMICAAEK-----VELQQHLLVQLIESC---RA-------DIRKTIMHLQFW 148 (555)
Q Consensus 95 --l~I~FkrP---s~~eI~srL~~Ic~kEg-----l~Id~~~L~~Li~~S---~G-------DIRqaLN~LQf~ 148 (555)
..+.|+.. ....+..++..++...+ ..++++.+..|+..+ .| ..|...+.++..
T Consensus 278 ~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A 351 (604)
T 3k1j_A 278 YGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAA 351 (604)
T ss_dssp HSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHH
T ss_pred cceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHH
Confidence 35565422 34556666666665432 578999999999876 56 489999888753
No 76
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.87 E-value=1.3 Score=42.75 Aligned_cols=101 Identities=6% Similarity=0.038 Sum_probs=70.4
Q ss_pred CcEEEEeCCCCCCcc-cHHHHHHHHHHHHH-cCCcEEEEecCCC--------CCC-cCccce--eEEEecCCCHHHHHHH
Q 008751 44 KPLILIEDVDVFFPE-DRGFIAGIQQIAEK-AKGPVILTSNSNN--------ITL-PDSLDR--LEVSFTMPMPKDLLSH 110 (555)
Q Consensus 44 kkLILiDEVD~Lf~e-DrGf~sAL~~liek-SKrPIILtCND~n--------~~L-~~l~~~--l~I~FkrPs~~eI~sr 110 (555)
+-+|+|||++.+... +..++..|..+... .+..+|+|.+... ... .++..+ ..+.+.+.+..++...
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 569999999988652 33466677777665 3567888887532 011 112222 5789999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 111 LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 111 L~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
+.......|...++. ..|+..++|..+-.-....
T Consensus 218 l~~~~~~~~~~~~~~--~~i~~~t~G~P~~l~~~~~ 251 (357)
T 2fna_A 218 LRRGFQEADIDFKDY--EVVYEKIGGIPGWLTYFGF 251 (357)
T ss_dssp HHHHHHHHTCCCCCH--HHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcH--HHHHHHhCCCHHHHHHHHH
Confidence 998777677777654 8899999998876544333
No 77
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.87 E-value=1.4 Score=39.40 Aligned_cols=61 Identities=8% Similarity=0.070 Sum_probs=37.7
Q ss_pred CCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCccc-HHHHHHHHHHHHHcCCc-EEEEecCC
Q 008751 16 ADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPED-RGFIAGIQQIAEKAKGP-VILTSNSN 84 (555)
Q Consensus 16 lGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eD-rGf~sAL~~liekSKrP-IILtCND~ 84 (555)
.|+.++.+++.+-..+ .+ -.+..++||||++.+...+ +.+...+..+.+ ...+ ||+++|..
T Consensus 63 ~g~~~~~~~~~~~~~~------~~-~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~-~g~~~iiits~~~ 125 (149)
T 2kjq_A 63 AGKNAAYIDAASMPLT------DA-AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRN-SGKGFLLLGSEYT 125 (149)
T ss_dssp TTCCEEEEETTTSCCC------GG-GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHH-HTCCEEEEEESSC
T ss_pred cCCcEEEEcHHHhhHH------HH-HhCCCEEEEeCccccChHHHHHHHHHHHHHHH-cCCcEEEEECCCC
Confidence 3888999998764332 11 1246899999999876543 223333333333 3457 88888864
No 78
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.57 E-value=0.13 Score=44.91 Aligned_cols=61 Identities=8% Similarity=0.065 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCC-----cc-cHHHHHHHHHHHHHcCCcEEEEecCCC-----CCCcCccce-eEEEecCCC
Q 008751 43 VKPLILIEDVDVFF-----PE-DRGFIAGIQQIAEKAKGPVILTSNSNN-----ITLPDSLDR-LEVSFTMPM 103 (555)
Q Consensus 43 kkkLILiDEVD~Lf-----~e-DrGf~sAL~~liekSKrPIILtCND~n-----~~L~~l~~~-l~I~FkrPs 103 (555)
++.+|+|||+|.+. .+ ...+...|..+++..+..||+++|... ..-+.++++ ..+.+..|+
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred CceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 45799999999986 21 244667788888888899999999753 122334443 457777664
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.53 E-value=0.27 Score=54.75 Aligned_cols=126 Identities=11% Similarity=0.055 Sum_probs=76.1
Q ss_pred CCceEEEeCCCc-ccc----cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCC-----C
Q 008751 17 DDEVVEVIHIPD-DEN----SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN-----I 86 (555)
Q Consensus 17 Gy~VIELNASDd-R~r----n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n-----~ 86 (555)
|..++++|+... ++. ...+.......++.+|+|| +.......|...++.....+|.++|... .
T Consensus 236 ~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-------~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 236 DKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-------AAIDASNILKPSLARGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp SCCEECC----------CTTHHHHHHHHHTCCCCEEEEC-------C--------CCCTTSSSCEEEEECCTTTTHHHHT
T ss_pred CCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEEEc-------CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhh
Confidence 888999888221 111 0001111112346788888 1122445666677777788888888764 2
Q ss_pred CCcCccce-eEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH------HHHHHHHHHHh
Q 008751 87 TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAA----EKVELQQHLLVQLIESCRADI------RKTIMHLQFWC 149 (555)
Q Consensus 87 ~L~~l~~~-l~I~FkrPs~~eI~srL~~Ic~k----Egl~Id~~~L~~Li~~S~GDI------RqaLN~LQf~s 149 (555)
.-+.++.+ ..|.|..|+..+....|..++.+ .++.+++..+..++..+.+.+ ++++..+...+
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~ 382 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHH
Confidence 22334443 57999999999999999988766 789999999999988765543 56776666543
No 80
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.15 E-value=1.3 Score=41.72 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=79.6
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAEK 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~liek 72 (555)
..++|++++..++.+++.+-... ...+...+ ....+.++++||+|.+... .......+.+++..
T Consensus 66 ~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 145 (254)
T 1ixz_A 66 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 145 (254)
T ss_dssp HHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHH
Confidence 45778888888999987652110 00000001 1123579999999976421 11122333444332
Q ss_pred -----cCCcEE--EEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC----
Q 008751 73 -----AKGPVI--LTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA---- 136 (555)
Q Consensus 73 -----SKrPII--LtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~-L~~Li~~S~G---- 136 (555)
..+.+| .++|.+...-+.++. + ..+.|..|+..+-...|+..+ .++.++++. +..|+..+.|
T Consensus 146 l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~--~~~~~~~~~~~~~la~~~~G~~~~ 223 (254)
T 1ixz_A 146 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA--RGKPLAEDVDLALLAKRTPGFVGA 223 (254)
T ss_dssp HHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH--TTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred HhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH--cCCCCCcccCHHHHHHHcCCCCHH
Confidence 123333 344555322223332 2 578999999988888777654 456665444 7778887765
Q ss_pred cHHHHHHHHHHHhhc
Q 008751 137 DIRKTIMHLQFWCQN 151 (555)
Q Consensus 137 DIRqaLN~LQf~s~s 151 (555)
||+..++..-.++..
T Consensus 224 dl~~~~~~a~~~a~~ 238 (254)
T 1ixz_A 224 DLENLLNEAALLAAR 238 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766655543
No 81
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=86.68 E-value=0.51 Score=46.07 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=45.3
Q ss_pred hHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc----------------
Q 008751 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---------------- 73 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS---------------- 73 (555)
.++|+.++..++.+ | +.. ++.....+. ..++||+||||. ..|..+.++++..
T Consensus 76 ~ala~~l~g~i~~f-a-ns~--s~f~l~~l~--~~kIiiLDEad~------~~~~~~d~~lrn~ldG~~~~iD~Khr~~~ 143 (212)
T 1tue_A 76 MSFIHFIQGAVISF-V-NST--SHFWLEPLT--DTKVAMLDDATT------TCWTYFDTYMRNALDGNPISIDRKHKPLI 143 (212)
T ss_dssp HHHHHHHTCEECCC-C-CSS--SCGGGGGGT--TCSSEEEEEECH------HHHHHHHHHCHHHHHTCCEEEC----CCE
T ss_pred HHHHHHhCCCeeeE-E-ecc--chhhhcccC--CCCEEEEECCCc------hhHHHHHHHHHHHhCCCcccHHHhhcCcc
Confidence 36677777666543 1 101 111111111 357999999983 1344444443321
Q ss_pred ---CCcEEEEecCC---CCCCcCccce-eEEEecCCCH
Q 008751 74 ---KGPVILTSNSN---NITLPDSLDR-LEVSFTMPMP 104 (555)
Q Consensus 74 ---KrPIILtCND~---n~~L~~l~~~-l~I~FkrPs~ 104 (555)
..|+|+|||-. ....+.+.++ ..+.|..|-+
T Consensus 144 ~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~~~p 181 (212)
T 1tue_A 144 QLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAFP 181 (212)
T ss_dssp EECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCSCCC
T ss_pred ccCCCCEEEecCCCcccccchhhhhhhEEEEEcCCCCC
Confidence 34999999984 3344445565 6778875543
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.24 E-value=0.48 Score=53.75 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=80.9
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~lie 71 (555)
...++|++++..++++|+++-... ...+...+ ....+.++++||+|.+... ++..+.++..++.
T Consensus 254 Larala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp HHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhh
Confidence 345789999999999998763321 00000001 1124579999999988652 2345556666665
Q ss_pred H----cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Q 008751 72 K----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIM 143 (555)
Q Consensus 72 k----SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN 143 (555)
. ..+.+|+++|++...-+.++. + ..+.+..|+..+-...|...+.+..+. +...+..++..+.|-.++.+.
T Consensus 334 g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~ 412 (806)
T 1ypw_A 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp SSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHH
T ss_pred hhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHH
Confidence 3 345677888887532222222 2 568899999988888887666543332 223466677666665444443
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.23 E-value=0.28 Score=42.98 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=42.2
Q ss_pred HHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc---CCcEEEEecCC
Q 008751 11 EAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---KGPVILTSNSN 84 (555)
Q Consensus 11 ~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS---KrPIILtCND~ 84 (555)
++++..+ .++++|+++-... ...+.+...+..+++|||+|.+..+ .+.+|.++++.. .++||+++|..
T Consensus 46 ~i~~~~~-~~~~~~~~~~~~~--~~~~~~~~a~~~~l~lDei~~l~~~---~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 46 YFHKNGT-PWVSPARVEYLID--MPMELLQKAEGGVLYVGDIAQYSRN---IQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp GGCCTTS-CEECCSSTTHHHH--CHHHHHHHTTTSEEEEEECTTCCHH---HHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred HHHHhCC-CeEEechhhCChH--hhhhHHHhCCCCeEEEeChHHCCHH---HHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 3444444 7888888763221 0111111123469999999999764 355677777653 47799999875
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.10 E-value=1.6 Score=41.96 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=79.2
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc--------cHHHHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAEK 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e--------DrGf~sAL~~liek 72 (555)
..++|+.++..++.+++++-... ...+...+ ....+.++++||+|.+... .......+.+++..
T Consensus 90 ~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 169 (278)
T 1iy2_A 90 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 169 (278)
T ss_dssp HHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 45778888888999987652110 00000001 1124579999999966321 11223444555443
Q ss_pred -----cCCc--EEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC----
Q 008751 73 -----AKGP--VILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA---- 136 (555)
Q Consensus 73 -----SKrP--IILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~-L~~Li~~S~G---- 136 (555)
.++. +|.++|.+...-+.++. + ..+.|..|+..+....|...+ +++.++++. +..|+..+.|
T Consensus 170 lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~--~~~~~~~~~~~~~la~~~~G~~~~ 247 (278)
T 1iy2_A 170 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA--RGKPLAEDVDLALLAKRTPGFVGA 247 (278)
T ss_dssp HTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH--TTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred HhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH--ccCCCCcccCHHHHHHHcCCCCHH
Confidence 1233 34455665432122232 2 578999999988888777654 456665444 7778887776
Q ss_pred cHHHHHHHHHHHhh
Q 008751 137 DIRKTIMHLQFWCQ 150 (555)
Q Consensus 137 DIRqaLN~LQf~s~ 150 (555)
||+.+++..-.++.
T Consensus 248 dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 248 DLENLLNEAALLAA 261 (278)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666665555444
No 85
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=83.98 E-value=0.88 Score=41.93 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=48.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCC--CCCcCccc---eeEEEecCCCHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN--ITLPDSLD---RLEVSFTMPMPKDLLSHLQ 112 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n--~~L~~l~~---~l~I~FkrPs~~eI~srL~ 112 (555)
+++++|+||++-+..-|..+..+|.++++..+..+|+++...+ ..+..+.+ +..+.|.+.+..++...|.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 5789999999877666899999999999875544777774221 11122222 3577888877666666554
No 86
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.90 E-value=3.3 Score=44.66 Aligned_cols=100 Identities=11% Similarity=0.120 Sum_probs=61.0
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHH-----------cCCcE-EEEecCCCC---CCcCccce--eEEEecCCCH-H
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEK-----------AKGPV-ILTSNSNNI---TLPDSLDR--LEVSFTMPMP-K 105 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liek-----------SKrPI-ILtCND~n~---~L~~l~~~--l~I~FkrPs~-~ 105 (555)
..+++|||++.+.. ..+.+|..+++. ...|+ |+++|.... ..+.++++ ..+.+..|+. .
T Consensus 110 ~~IL~IDEI~r~~~---~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~e 186 (500)
T 3nbx_X 110 AEIVFLDEIWKAGP---AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKA 186 (500)
T ss_dssp CSEEEEESGGGCCH---HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHH
T ss_pred ceeeeHHhHhhhcH---HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhh
Confidence 45899999998754 356788888863 13456 666664321 11234555 4567777776 3
Q ss_pred HHHHHHHH-----------------------HHHHcCCCCCHHHHHHHHHHc----------CCcHHHHHHHHH
Q 008751 106 DLLSHLQM-----------------------ICAAEKVELQQHLLVQLIESC----------RADIRKTIMHLQ 146 (555)
Q Consensus 106 eI~srL~~-----------------------Ic~kEgl~Id~~~L~~Li~~S----------~GDIRqaLN~LQ 146 (555)
+....|.. .....++.+++++++.|+... +...|+.+..+.
T Consensus 187 e~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr 260 (500)
T 3nbx_X 187 NFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIR 260 (500)
T ss_dssp HHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHH
T ss_pred hHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHH
Confidence 33333322 123457889999988887665 345677555443
No 87
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=81.42 E-value=0.16 Score=58.01 Aligned_cols=143 Identities=16% Similarity=0.096 Sum_probs=66.7
Q ss_pred CchhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcc------cHH-H-HHHHHHHH
Q 008751 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE------DRG-F-IAGIQQIA 70 (555)
Q Consensus 7 ~~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~e------DrG-f-~sAL~~li 70 (555)
+...++|+++|.+++.+++++-.++ ...+..-| ....+.+|+|||+|.+... +.+ . .+.+.+|+
T Consensus 526 ~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL 605 (806)
T 3cf2_A 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 605 (806)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHH
T ss_pred HHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHH
Confidence 4456899999999999998873321 01111111 1235789999999998752 111 1 11334444
Q ss_pred HH-----cCCcEEEE--ecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HcC
Q 008751 71 EK-----AKGPVILT--SNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIE----SCR 135 (555)
Q Consensus 71 ek-----SKrPIILt--CND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~----~S~ 135 (555)
.. .+.+|+++ +|.+...=+.++. + ..|+|..|+.++-...|+....+..+.- +-.++.|++ +++
T Consensus 606 ~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~-~~dl~~la~~t~g~SG 684 (806)
T 3cf2_A 606 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-DVDLEFLAKMTNGFSG 684 (806)
T ss_dssp HHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC-C---------------
T ss_pred HHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHhCCCCCH
Confidence 32 33345444 4554422222322 3 5788999987766665555443333221 122444444 467
Q ss_pred CcHHHHHHHHHHHhh
Q 008751 136 ADIRKTIMHLQFWCQ 150 (555)
Q Consensus 136 GDIRqaLN~LQf~s~ 150 (555)
.||....+.-...+.
T Consensus 685 adi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 685 ADLTEICQRACKLAI 699 (806)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899988876555443
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.16 E-value=0.0098 Score=67.48 Aligned_cols=145 Identities=16% Similarity=0.074 Sum_probs=81.9
Q ss_pred chhHHHhhCCCceEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCCccc-------HH-HHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPED-------RG-FIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r----n-~~v~gsl---~~~kkkLILiDEVD~Lf~eD-------rG-f~sAL~~lie 71 (555)
...++|++++..++.+++++-..+ . ..+...+ ....+.+|+|||+|.++... .+ ....+.+++.
T Consensus 527 Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~ 606 (806)
T 1ypw_A 527 LAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 606 (806)
T ss_dssp HHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHH
Confidence 345889999999999999884321 0 0000001 01235799999999886421 11 1222333332
Q ss_pred -------HcCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HcCC
Q 008751 72 -------KAKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIE----SCRA 136 (555)
Q Consensus 72 -------kSKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~----~S~G 136 (555)
..++-||.++|.+...-+.++. + ..|.|..|+..+....|+..+....+. .+..++.|+. .+..
T Consensus 607 ~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sga 685 (806)
T 1ypw_A 607 EMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGA 685 (806)
T ss_dssp TCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCH
T ss_pred HHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHH
Confidence 2345677788876432233443 3 578999999888777777665433221 1111233333 3566
Q ss_pred cHHHHHHHHHHHhhcCC
Q 008751 137 DIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 137 DIRqaLN~LQf~s~s~~ 153 (555)
||+..++.-...+....
T Consensus 686 di~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 686 DLTEICQRACKLAIRES 702 (806)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998887777666543
No 89
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=79.15 E-value=0.44 Score=41.73 Aligned_cols=70 Identities=10% Similarity=0.001 Sum_probs=42.5
Q ss_pred hHHHhhC---CCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCC
Q 008751 10 CEAAQHA---DDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSN 84 (555)
Q Consensus 10 ~~iAkel---Gy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~ 84 (555)
.++++.. +..++ +|++..... ....+.+......+++|||+|.+..+ .+.+|..++.. .+..||+++|..
T Consensus 42 ~~i~~~~~~~~~~~v-~~~~~~~~~-~~~~~~~~~a~~g~l~ldei~~l~~~---~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 42 RYLHQFGRNAQGEFV-YRELTPDNA-PQLNDFIALAQGGTLVLSHPEHLTRE---QQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHSSTTTTSCCE-EEECCTTTS-SCHHHHHHHHTTSCEEEECGGGSCHH---HHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred HHHHHhCCccCCCEE-EECCCCCcc-hhhhcHHHHcCCcEEEEcChHHCCHH---HHHHHHHHHhhcCCCEEEEEECCcC
Confidence 3455554 67788 998763321 11111111113468999999999764 35566666654 346799999874
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=78.11 E-value=3.2 Score=36.95 Aligned_cols=71 Identities=13% Similarity=-0.112 Sum_probs=39.1
Q ss_pred hCCCceEEEeCCCcccc--cccccccCC-----CCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCC
Q 008751 15 HADDEVVEVIHIPDDEN--SHGVMGKSD-----NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSN 84 (555)
Q Consensus 15 elGy~VIELNASDdR~r--n~~v~gsl~-----~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~ 84 (555)
..|+.++-+++.+-... .....+... -.+..++||||++.... |......+.++++. ..+++|+++|..
T Consensus 65 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~-~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 65 KKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERL-SDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCC-CHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcC-CHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45778888877653211 000000000 01468999999984321 33334455555443 457999999986
Q ss_pred CC
Q 008751 85 NI 86 (555)
Q Consensus 85 n~ 86 (555)
..
T Consensus 144 ~~ 145 (180)
T 3ec2_A 144 LQ 145 (180)
T ss_dssp SC
T ss_pred hh
Confidence 53
No 91
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=73.56 E-value=10 Score=40.53 Aligned_cols=106 Identities=17% Similarity=0.270 Sum_probs=70.1
Q ss_pred CcEEEEeCCCCCCc------cc---HHHHHHHHHHHHHc------------CCcEEEEe-----cCCCCCCcCcccee--
Q 008751 44 KPLILIEDVDVFFP------ED---RGFIAGIQQIAEKA------------KGPVILTS-----NSNNITLPDSLDRL-- 95 (555)
Q Consensus 44 kkLILiDEVD~Lf~------eD---rGf~sAL~~liekS------------KrPIILtC-----ND~n~~L~~l~~~l-- 95 (555)
..++++||+|.+.. .| .|-+.||.++++-+ ++=||++. |... .+|.+++++
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~~R~~i 329 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-LIPELQGRLPI 329 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-SCHHHHTTCCE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-cchHHhcccce
Confidence 35899999998854 24 34667999999842 32245554 2222 456666764
Q ss_pred EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHH--------cCCcHHHHHHHHHHHhh
Q 008751 96 EVSFTMPMPKDLLSHLQ-----------MICAAEKV--ELQQHLLVQLIES--------CRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 96 ~I~FkrPs~~eI~srL~-----------~Ic~kEgl--~Id~~~L~~Li~~--------S~GDIRqaLN~LQf~s~ 150 (555)
.|.|...+.+++...|. .....+|+ .++++.+..|++. -+...|..-+.++-++.
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 47899999999888773 23344565 5789999999985 24566666555655444
No 92
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=70.07 E-value=7.3 Score=42.64 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=28.9
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHc---------------CCcEEEEecCC
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA---------------KGPVILTSNSN 84 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekS---------------KrPIILtCND~ 84 (555)
..+++|||+|.+..+ .+.+|.+.|+.. ++.||.++|..
T Consensus 392 ~gil~IDEid~l~~~---~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDE---DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp SSEECCTTTTCCCSH---HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred CCcEEeehhhhCCHh---HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 579999999999775 457888888742 33488888865
No 93
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=69.53 E-value=3.5 Score=38.41 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=43.2
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEE-Eec---CCC-CCCcCccc---eeEEEecCCCHHHHHHHH
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVIL-TSN---SNN-ITLPDSLD---RLEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIIL-tCN---D~n-~~L~~l~~---~l~I~FkrPs~~eI~srL 111 (555)
..+.++|+||++.+-..|..|+.+|.++++. ..|+|+ |.. +.. ..+.++.. +..+.+.+-+.+.+...+
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLFIQAVRQTLST-PGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-SSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred cCCCEEEEeCCCccccccHHHHHHHHHHHhC-CCcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence 3578999999998866677899999999985 457886 222 322 11112221 355666655544554444
No 94
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=59.47 E-value=6.4 Score=38.44 Aligned_cols=141 Identities=19% Similarity=0.226 Sum_probs=76.6
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccCC---CCCCcEEEEeCCCCCCcc--c--HHH-HHHHHHHHHH--
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKSD---NHVKPLILIEDVDVFFPE--D--RGF-IAGIQQIAEK-- 72 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl~---~~kkkLILiDEVD~Lf~e--D--rGf-~sAL~~liek-- 72 (555)
...++|.+++...+.++.++-... ...+...++ ...+.++++||+|.+... + .+. ...+.+++..
T Consensus 60 Lakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Ls 139 (274)
T 2x8a_A 60 LAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMD 139 (274)
T ss_dssp HHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhh
Confidence 345789999999999999773221 000000010 124579999999987642 1 010 1122333332
Q ss_pred ---cCCc--EEEEecCCCCCCcC-ccc--e--eEEEecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHHHHHH------Hc
Q 008751 73 ---AKGP--VILTSNSNNITLPD-SLD--R--LEVSFTMPMPKDLLSHLQMICAAE-KVELQ-QHLLVQLIE------SC 134 (555)
Q Consensus 73 ---SKrP--IILtCND~n~~L~~-l~~--~--l~I~FkrPs~~eI~srL~~Ic~kE-gl~Id-~~~L~~Li~------~S 134 (555)
.++. +|.++|.+.. +.+ ++. + ..|.|..|+..+-...|+.+++.. +..++ +-.+..|+. ++
T Consensus 140 gg~~~~~~i~ia~tn~p~~-LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~s 218 (274)
T 2x8a_A 140 GLEARQQVFIMAATNRPDI-IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT 218 (274)
T ss_dssp TCCSTTCEEEEEEESCGGG-SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCC
T ss_pred cccccCCEEEEeecCChhh-CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcC
Confidence 1222 3445566542 222 222 3 578899999988888888776542 22222 223555553 45
Q ss_pred CCcHHHHHHHHHHHh
Q 008751 135 RADIRKTIMHLQFWC 149 (555)
Q Consensus 135 ~GDIRqaLN~LQf~s 149 (555)
+.||...+..--+.+
T Consensus 219 gadl~~l~~~a~~~a 233 (274)
T 2x8a_A 219 GADLSALVREASICA 233 (274)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 669987766554433
No 95
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=56.25 E-value=8.7 Score=34.00 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=39.7
Q ss_pred ccccccccccccccchhhccchhHHHHHHHHHHHHHHc---------------cccccccchhhc-CCC-----------
Q 008751 470 QLMDECSRMDFKRRSKLEELRSQEAIDLVRESWKKLRD---------------GNTDLRQYATLE-KPN----------- 522 (555)
Q Consensus 470 ~~mdecsr~df~~~~~~~~~~~~~~~~~vq~~w~kl~~---------------~~~dl~~~~~~e-~~~----------- 522 (555)
|++|+|++|-+ +..++..|+++|.++.. .||+++.+-..= +.+
T Consensus 1 ~~~~~~~~m~l----------t~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~ 70 (149)
T 2lhb_A 1 PIVDTGSVAPL----------SAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADV 70 (149)
T ss_dssp CCCSSSCCCCC----------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGGCGGGTTCCSHHHHHTCHHH
T ss_pred CCCCCCCCCCC----------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHCHhHHHHhhhhcCCCCHHHHhCCHHH
Confidence 57888888742 23456889999988854 689999888631 332
Q ss_pred hhhHHHhhhccccccch
Q 008751 523 AFQIIKLTHGMCDLISE 539 (555)
Q Consensus 523 a~~~~~l~~~~s~lise 539 (555)
..+..+++..+...|..
T Consensus 71 ~~h~~~v~~~l~~~v~~ 87 (149)
T 2lhb_A 71 RWHAERIINAVDDAVAS 87 (149)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 25666677666655543
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=54.51 E-value=6.6 Score=39.09 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=34.7
Q ss_pred hCCCceEEEeCCCcccc--cccccccCCC-----CCCcEEEEeCCCCCCcc--cHH-HHHHHHHHHHHcCCcEEEEecCC
Q 008751 15 HADDEVVEVIHIPDDEN--SHGVMGKSDN-----HVKPLILIEDVDVFFPE--DRG-FIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 15 elGy~VIELNASDdR~r--n~~v~gsl~~-----~kkkLILiDEVD~Lf~e--DrG-f~sAL~~liekSKrPIILtCND~ 84 (555)
..|+.|+.+++++-... .....+.... .+..+|||||++..... .+. +...|.......+.|+|+|+|..
T Consensus 179 ~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 179 KKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp HSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred hcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 56799999998752111 1111111100 13579999999754321 111 22222221112467999999975
No 97
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=53.71 E-value=6.8 Score=35.73 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=30.6
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n 85 (555)
.-++||+||+|.+.+ +.||+..+..+++.. ++++|+.+-...
T Consensus 158 ~~~~lViDEah~~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 201 (220)
T 1t6n_A 158 HIKHFILDECDKMLE-QLDMRRDVQEIFRMTPHEKQVMMFSATLS 201 (220)
T ss_dssp TCCEEEEESHHHHHS-SHHHHHHHHHHHHTSCSSSEEEEEESCCC
T ss_pred cCCEEEEcCHHHHhc-ccCcHHHHHHHHHhCCCcCeEEEEEeecC
Confidence 458999999998865 367888888888754 356666655543
No 98
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=49.84 E-value=5.3 Score=35.89 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=27.8
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
+-++||+||+|.+.+ .+|...+..++... ++++|+.+-.
T Consensus 146 ~~~~lViDEah~~~~--~~~~~~l~~i~~~~~~~~~~l~~SAT 186 (206)
T 1vec_A 146 HVQMIVLDEADKLLS--QDFVQIMEDIILTLPKNRQILLYSAT 186 (206)
T ss_dssp TCCEEEEETHHHHTS--TTTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cCCEEEEEChHHhHh--hCcHHHHHHHHHhCCccceEEEEEee
Confidence 467999999998875 35777777777654 4566665544
No 99
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=46.65 E-value=23 Score=31.74 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCcEEEEeCCCCCCccc----------HHHHHHHHHHHHHcCCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPED----------RGFIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eD----------rGf~sAL~~liekSKrPIILtCND~ 84 (555)
+.++|||||...+.+.+ ..+...|.++++...+++|+++...
T Consensus 105 ~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~ 156 (220)
T 2cvh_A 105 NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVH 156 (220)
T ss_dssp TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEE
Confidence 47899999999886431 2245557778877789999887654
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=46.22 E-value=57 Score=42.28 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=68.2
Q ss_pred hHHHhhCCCceEEEeCCCcccc-------------cccccc----cCCCCCCcEEEEeCCCCCCcc---cHHHHHHHHHH
Q 008751 10 CEAAQHADDEVVEVIHIPDDEN-------------SHGVMG----KSDNHVKPLILIEDVDVFFPE---DRGFIAGIQQI 69 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~r-------------n~~v~g----sl~~~kkkLILiDEVD~Lf~e---DrGf~sAL~~l 69 (555)
..+|+..++.++.+|.|...+. ....+| ...++++-+|+|||+|.--.+ .+.-...|+++
T Consensus 1286 ~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~ 1365 (2695)
T 4akg_A 1286 NALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQL 1365 (2695)
T ss_dssp HHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHH
T ss_pred HHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHH
Confidence 3567777999999999874321 001112 112335568889999865332 33466778888
Q ss_pred HHHc--------------CCcEEEEecCCC----CCCc-Cccc-eeEEEecCCCHHHHHHHHHHHHHH
Q 008751 70 AEKA--------------KGPVILTSNSNN----ITLP-DSLD-RLEVSFTMPMPKDLLSHLQMICAA 117 (555)
Q Consensus 70 iekS--------------KrPIILtCND~n----~~L~-~l~~-~l~I~FkrPs~~eI~srL~~Ic~k 117 (555)
++.. ++-+|.+||.+. ..+. +++. ...|.+..|+.+++...+..|...
T Consensus 1366 le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1366 MEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp HHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred HhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHH
Confidence 8741 234667777763 2233 3334 367899999999999888888653
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=44.76 E-value=58 Score=35.58 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=53.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-----------CCcEEEEecCCC----------CCCcC-ccceeEEEe-
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-----------KGPVILTSNSNN----------ITLPD-SLDRLEVSF- 99 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-----------KrPIILtCND~n----------~~L~~-l~~~l~I~F- 99 (555)
...++++||++.+... -+.+|.+.|+.- ++-||.++|-.. ..|+. +++++.+.|
T Consensus 300 dgGvl~lDEIn~~~~~---~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i 376 (506)
T 3f8t_A 300 DGGILAVDHLEGAPEP---HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAF 376 (506)
T ss_dssp TTSEEEEECCTTCCHH---HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEE
T ss_pred CCCeeehHhhhhCCHH---HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEE
Confidence 4689999999999765 468888888852 455788888642 13333 445654433
Q ss_pred --cCC-------------CHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHH
Q 008751 100 --TMP-------------MPKDLLSHLQMIC-AAEKVELQQHLLVQLIES 133 (555)
Q Consensus 100 --krP-------------s~~eI~srL~~Ic-~kEgl~Id~~~L~~Li~~ 133 (555)
..| +.+.+..++..+- ..-...+++++.+.|+..
T Consensus 377 ~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 377 LGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp TTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred ecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 222 2344555444443 122567788877777654
No 102
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=44.67 E-value=17 Score=32.56 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=22.9
Q ss_pred CcEEEEeCCCCCCccc--HH-HHHHHHHHHHHcCCcEEEEecCC
Q 008751 44 KPLILIEDVDVFFPED--RG-FIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 44 kkLILiDEVD~Lf~eD--rG-f~sAL~~liekSKrPIILtCND~ 84 (555)
..+|+|||++.....+ +. ....+.......+.++|+|+|..
T Consensus 116 ~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 116 VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 4699999998754321 21 22222222213467899999974
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=44.36 E-value=20 Score=32.21 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=30.7
Q ss_pred CCc--EEEEeCCCCCCccc----HHHHHHHHHHHHHcCCcEEEEecCC
Q 008751 43 VKP--LILIEDVDVFFPED----RGFIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 43 kkk--LILiDEVD~Lf~eD----rGf~sAL~~liekSKrPIILtCND~ 84 (555)
+.+ +||+||...+...| +.++..|.++++...++||+++.+.
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 467 99999999776332 4566777777777788999998775
No 104
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=44.22 E-value=5.7 Score=36.97 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=28.2
Q ss_pred CCcEEEEeCCCCCCcc-cHHHHHHHHHHHHHc---CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPE-DRGFIAGIQQIAEKA---KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e-DrGf~sAL~~liekS---KrPIILtCND 83 (555)
+-++||+||+|.+.+. ..||+..+..++... ++++|+.+-.
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT 219 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSAT 219 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESS
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 4579999999998763 367888998887652 4455555433
No 105
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=41.21 E-value=1.2e+02 Score=24.17 Aligned_cols=74 Identities=14% Similarity=-0.000 Sum_probs=42.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCCCCCCcCccc-e-eEEEecCCCHHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNITLPDSLD-R-LEVSFTMPMPKDLLSHLQMICAA 117 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~n~~L~~l~~-~-l~I~FkrPs~~eI~srL~~Ic~k 117 (555)
...+||+|-- +.+. .+...+..+-+. ...|||+++..........+. . ..+-.++.+..++...+..+...
T Consensus 47 ~~dlvi~d~~--l~~~--~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 47 PPDVLISDVN--MDGM--DGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCSEEEECSS--CSSS--CHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CCCC--CHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 4679999742 2211 134444444442 367999999876533222332 2 33444555889999999998876
Q ss_pred cCC
Q 008751 118 EKV 120 (555)
Q Consensus 118 Egl 120 (555)
.+.
T Consensus 123 ~~~ 125 (133)
T 3nhm_A 123 AEA 125 (133)
T ss_dssp HC-
T ss_pred hcc
Confidence 543
No 106
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=38.35 E-value=6.8 Score=36.58 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=26.5
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
.-++||+||+|.+.+ .||...+..+++.. ++++|+.+-.
T Consensus 173 ~~~~lViDEah~~~~--~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 173 WIKMFVLDEADEMLS--RGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp TCCEEEEESHHHHHH--TTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred cCcEEEECCchHhhc--cCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 457999999998764 45666777777654 3456655444
No 107
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.16 E-value=22 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 121 ELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 121 ~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
.++...|+.++..++||+-++|+.|=-+.
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQMG 50 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHcCc
Confidence 68999999999999999999999985433
No 108
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=34.41 E-value=21 Score=31.75 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=10.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGI 66 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL 66 (555)
...+||+||+|.+.+ .+++..+
T Consensus 162 ~~~~iIiDEah~~~~--~~~~~~~ 183 (216)
T 3b6e_A 162 DFSLIIIDECHHTNK--EAVYNNI 183 (216)
T ss_dssp GCSEEEETTC---------CHHHH
T ss_pred cccEEEEECchhhcc--CCcHHHH
Confidence 457999999999864 3344444
No 109
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=34.23 E-value=36 Score=32.55 Aligned_cols=43 Identities=14% Similarity=0.342 Sum_probs=31.4
Q ss_pred CCcEEEEeCCCCCCccc-------HHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPED-------RGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eD-------rGf~sAL~~liekSKrPIILtCND~n 85 (555)
..++|||||.-.++..| +-+...|.++++...++||+++.+..
T Consensus 133 ~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 133 GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 46899999999854322 44666777787778899999987753
No 110
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=33.94 E-value=46 Score=30.91 Aligned_cols=40 Identities=8% Similarity=0.210 Sum_probs=25.7
Q ss_pred CCcEEEEeCCCCCCcccHHHH-HHHHHHHHHc-CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFI-AGIQQIAEKA-KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~-sAL~~liekS-KrPIILtCND 83 (555)
.-++|||||+|.+.- +.||. ..+..++... ++++|+.+-.
T Consensus 176 ~~~~lVlDEah~~~~-~~~~~~~~l~~i~~~~~~~~~il~SAT 217 (235)
T 3llm_A 176 GISHVIVDEIHERDI-NTDFLLVVLRDVVQAYPEVRIVLMSAT 217 (235)
T ss_dssp TCCEEEECCTTSCCH-HHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred CCcEEEEECCccCCc-chHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 458999999998633 45566 4556666543 3556665544
No 111
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=33.71 E-value=8.1 Score=35.37 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=27.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~ 84 (555)
+-++||+||+|.+.+ .|+...+..+++.. ++++|+.+-..
T Consensus 150 ~~~~lViDEah~~~~--~~~~~~l~~i~~~~~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 150 TAHILVVDEADLMLD--MGFITDVDQIAARMPKDLQMLVFSATI 191 (219)
T ss_dssp GCCEEEECSHHHHHH--TTCHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred cceEEEEcCchHHhh--hChHHHHHHHHHhCCcccEEEEEecCC
Confidence 457999999998864 45677788887764 34566555444
No 112
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=33.18 E-value=1.5e+02 Score=24.11 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=39.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCCCC-CCcCccc-e-eEEEecCCCHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNI-TLPDSLD-R-LEVSFTMPMPKDLLSHLQMICA 116 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~n~-~L~~l~~-~-l~I~FkrPs~~eI~srL~~Ic~ 116 (555)
...+||+|-- +.+ ..++..+..+-+. ...|||+++..... .....+. . ..+-.++.+..++..++..+..
T Consensus 46 ~~dlvi~D~~--l~~--~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 46 HPDLVILDMD--IIG--ENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CCSEEEEETT--C--------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CCC--CcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 4679999832 211 1233344444333 46799999887643 2222333 2 3444455588899999988876
Q ss_pred Hc
Q 008751 117 AE 118 (555)
Q Consensus 117 kE 118 (555)
..
T Consensus 122 ~~ 123 (140)
T 3n53_A 122 TQ 123 (140)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 113
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=33.02 E-value=37 Score=29.52 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHc------------------cccccccchhhc-CCC------hhhHHHhhhccccccch
Q 008751 493 EAIDLVRESWKKLRD------------------GNTDLRQYATLE-KPN------AFQIIKLTHGMCDLISE 539 (555)
Q Consensus 493 ~~~~~vq~~w~kl~~------------------~~~dl~~~~~~e-~~~------a~~~~~l~~~~s~lise 539 (555)
.++..||.+|.++.. .||+++.+-..- +.+ ..|..+++..+...|.-
T Consensus 5 ~~~~~V~~sw~~v~~~~~~~~~~g~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ 76 (140)
T 1x9f_D 5 TESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISM 76 (140)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhChhHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888764 489999888631 222 45667777777666653
No 114
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=32.47 E-value=1.7e+02 Score=23.72 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=54.1
Q ss_pred HHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-cCCcEEEEecCCCCC-C
Q 008751 11 EAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNIT-L 88 (555)
Q Consensus 11 ~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-SKrPIILtCND~n~~-L 88 (555)
.+.+..||.|...+... + ....+......+||+|-- +.++...++..+..+-+. ...|||+++...... .
T Consensus 24 ~~L~~~g~~v~~~~~~~--~----a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~ 95 (136)
T 3kto_A 24 KLLSPLDVTIQCFASAE--S----FMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTA 95 (136)
T ss_dssp HHHTTSSSEEEEESSHH--H----HTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHH
T ss_pred HHHHHCCcEEEEeCCHH--H----HHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHH
Confidence 34455688777544221 1 111122335679999732 211002345555555443 367999998875421 1
Q ss_pred cCccc--eeEEEecCCCHHHHHHHHHHHHHHcC
Q 008751 89 PDSLD--RLEVSFTMPMPKDLLSHLQMICAAEK 119 (555)
Q Consensus 89 ~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kEg 119 (555)
...+. ...+-.++.+..++...+..+.....
T Consensus 96 ~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 96 VRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp HHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 11111 13344455588999999998876654
No 115
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=32.36 E-value=10 Score=34.88 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTS 81 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtC 81 (555)
+-++||+||+|.+.+ .||...+..+++.. ++++|+.+
T Consensus 167 ~~~~lViDEah~~~~--~~~~~~~~~i~~~~~~~~~~l~~S 205 (228)
T 3iuy_A 167 SITYLVIDEADKMLD--MEFEPQIRKILLDVRPDRQTVMTS 205 (228)
T ss_dssp TCCEEEECCHHHHHH--TTCHHHHHHHHHHSCSSCEEEEEE
T ss_pred cceEEEEECHHHHhc--cchHHHHHHHHHhCCcCCeEEEEE
Confidence 458999999998765 35777788877764 34555544
No 116
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=31.60 E-value=9.5 Score=34.10 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=26.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~ 84 (555)
.-++||+||+|.+.+ .|+...+..++... .+++|+.+-..
T Consensus 144 ~~~~iViDEah~~~~--~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 144 RVEVAVLDEADEMLS--MGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp TCSEEEEESHHHHHH--TTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred hceEEEEEChhHhhc--cchHHHHHHHHHhCCccCeEEEEEEec
Confidence 468999999998764 34666777777653 34566655443
No 117
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=30.76 E-value=11 Score=35.36 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=21.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek 72 (555)
.-++||+||+|.+.+ .||...+..+++.
T Consensus 174 ~~~~lViDEah~~~~--~~~~~~~~~i~~~ 201 (253)
T 1wrb_A 174 FCKYIVLDEADRMLD--MGFEPQIRKIIEE 201 (253)
T ss_dssp TCCEEEEETHHHHHH--TTCHHHHHHHHHS
T ss_pred hCCEEEEeCHHHHHh--CchHHHHHHHHhh
Confidence 457999999998864 3577788888874
No 118
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=30.75 E-value=35 Score=30.09 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHc---------------cccccccchhh-cCCC--------hhhHHHhhhccccccch
Q 008751 491 SQEAIDLVRESWKKLRD---------------GNTDLRQYATL-EKPN--------AFQIIKLTHGMCDLISE 539 (555)
Q Consensus 491 ~~~~~~~vq~~w~kl~~---------------~~~dl~~~~~~-e~~~--------a~~~~~l~~~~s~lise 539 (555)
+..++..|+.+|.++.. .||+++.+-.. .... ..|..+++..+...|.-
T Consensus 12 s~~~~~~v~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~d~~~~~~n~~~~~h~~~v~~al~~~v~~ 84 (150)
T 1sct_A 12 SEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDS 84 (150)
T ss_dssp CHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGGCTTCCGGGGGGSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHChhHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999988854 48999988863 1222 24777787777776654
No 119
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=30.59 E-value=13 Score=33.86 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=26.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
+-++||+||+|.+.+ .|+...+..++... ++++|+.+-.
T Consensus 155 ~~~~iViDEah~~~~--~~~~~~l~~i~~~~~~~~~~i~lSAT 195 (224)
T 1qde_A 155 KIKMFILDEADEMLS--SGFKEQIYQIFTLLPPTTQVVLLSAT 195 (224)
T ss_dssp TCCEEEEETHHHHHH--TTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred hCcEEEEcChhHHhh--hhhHHHHHHHHHhCCccCeEEEEEee
Confidence 468999999998764 34666777777653 3445555544
No 120
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=30.49 E-value=10 Score=36.25 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=26.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTS 81 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtC 81 (555)
+-++||+||+|.+.+ .||...+..+++.. ++++|+.+
T Consensus 201 ~l~~lViDEah~l~~--~~~~~~l~~i~~~~~~~~q~l~~S 239 (262)
T 3ly5_A 201 NLQCLVIDEADRILD--VGFEEELKQIIKLLPTRRQTMLFS 239 (262)
T ss_dssp TCCEEEECSHHHHHH--TTCHHHHHHHHHHSCSSSEEEEEC
T ss_pred cCCEEEEcChHHHhh--hhHHHHHHHHHHhCCCCCeEEEEE
Confidence 457999999998865 46777888888764 34455443
No 121
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=30.45 E-value=46 Score=31.97 Aligned_cols=42 Identities=7% Similarity=0.264 Sum_probs=27.3
Q ss_pred CCcEEEEeCCCCCCcc----cH-----HHHHHHHHHHHHcCCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPE----DR-----GFIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e----Dr-----Gf~sAL~~liekSKrPIILtCND~ 84 (555)
+.++|||||.-.+..+ |+ .+...|.++.+...++||+++-+.
T Consensus 147 ~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 147 GCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp CCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 5789999999986532 22 244556666677789999999774
No 122
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=30.27 E-value=10 Score=35.06 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=26.3
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
.-++||+||+|.+.+ .||...+..+++.. ++++|+.+-.
T Consensus 171 ~~~~lViDEah~~~~--~~~~~~~~~i~~~~~~~~~~l~~SAT 211 (236)
T 2pl3_A 171 DLQMLVLDEADRILD--MGFADTMNAVIENLPKKRQTLLFSAT 211 (236)
T ss_dssp TCCEEEETTHHHHHH--TTTHHHHHHHHHTSCTTSEEEEEESS
T ss_pred cccEEEEeChHHHhc--CCcHHHHHHHHHhCCCCCeEEEEEee
Confidence 457999999998764 35667777777653 3445555443
No 123
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=29.99 E-value=36 Score=31.13 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=30.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n 85 (555)
...+|+||||..+..+ .+..|..++.. ..|||++..+.+
T Consensus 76 ~~dvviIDE~Q~~~~~---~~~~l~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS---LFEVVKDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSCTT---HHHHHHHHHHT-TCEEEEEEESBC
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHHHC-CCCEEEEeeccc
Confidence 4579999999987543 66777778776 789999987654
No 124
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=29.55 E-value=57 Score=29.63 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=31.9
Q ss_pred CCcEEEEeCCCCCCccc----HHHHHHHHHHHHHcCCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPED----RGFIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eD----rGf~sAL~~liekSKrPIILtCND~ 84 (555)
+.++|++|++..+..+| +.+...|.++++...++||+++...
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~ 173 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVS 173 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46799999999887433 4556677777777788999988764
No 125
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.52 E-value=1.9e+02 Score=23.40 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=51.3
Q ss_pred CCCceEEEeCCCcccccccccccCCC-CCCcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCcEEEEecCCCCC-CcC
Q 008751 16 ADDEVVEVIHIPDDENSHGVMGKSDN-HVKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNIT-LPD 90 (555)
Q Consensus 16 lGy~VIELNASDdR~rn~~v~gsl~~-~kkkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrPIILtCND~n~~-L~~ 90 (555)
.||+|+..+...+- ...+.. ....+||+|=- | .++..+...+..+-+ ....|||+++...+.. ...
T Consensus 28 ~~~~v~~~~~~~~a------~~~l~~~~~~dlvi~D~~--l-~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~ 98 (140)
T 3lua_A 28 GEYDFIEVENLKKF------YSIFKDLDSITLIIMDIA--F-PVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHA 98 (140)
T ss_dssp CCCEEEEECSHHHH------HTTTTTCCCCSEEEECSC--S-SSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHH
T ss_pred cCccEEEECCHHHH------HHHHhcCCCCcEEEEeCC--C-CCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHH
Confidence 78988754432211 111222 46789998732 2 212335555555554 3567999999876421 111
Q ss_pred ccc-e-eEEEecCCCHHHHHHHHHHHHHHc
Q 008751 91 SLD-R-LEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 91 l~~-~-l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
.+. . ..+-.++.+..++...+..+....
T Consensus 99 ~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 99 ALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp HHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred HHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 122 1 334445557788988888876543
No 126
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=28.38 E-value=12 Score=35.59 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=26.3
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
.-++||+||+|.+.+. ||...+..+++.. ++++|+.+-.
T Consensus 186 ~~~~lViDEah~l~~~--~~~~~l~~i~~~~~~~~~~l~~SAT 226 (249)
T 3ber_A 186 ALKYLVMDEADRILNM--DFETEVDKILKVIPRDRKTFLFSAT 226 (249)
T ss_dssp TCCEEEECSHHHHHHT--TCHHHHHHHHHSSCSSSEEEEEESS
T ss_pred ccCEEEEcChhhhhcc--ChHHHHHHHHHhCCCCCeEEEEecc
Confidence 4579999999987653 5777788887653 3445544433
No 127
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=27.62 E-value=13 Score=34.35 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=25.3
Q ss_pred CCcEEEEeCCCCCCcccHH-HHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRG-FIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrG-f~sAL~~liekS--KrPIILtCND 83 (555)
+-++||+||+|.+.+ .| |...+..+++.. ++++|+.+-.
T Consensus 166 ~~~~lViDEah~~~~--~~~~~~~~~~i~~~~~~~~~~l~lSAT 207 (230)
T 2oxc_A 166 SIRLFILDEADKLLE--EGSFQEQINWIYSSLPASKQMLAVSAT 207 (230)
T ss_dssp GCCEEEESSHHHHHS--TTSSHHHHHHHHHHSCSSCEEEEEESC
T ss_pred cCCEEEeCCchHhhc--CcchHHHHHHHHHhCCCCCeEEEEEec
Confidence 346999999998864 24 667777777654 3445554433
No 128
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=27.27 E-value=35 Score=30.15 Aligned_cols=49 Identities=4% Similarity=0.064 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHc---------------cccccccchhh-cCCCh----------hhHHHhhhccccccchhh
Q 008751 493 EAIDLVRESWKKLRD---------------GNTDLRQYATL-EKPNA----------FQIIKLTHGMCDLISEAD 541 (555)
Q Consensus 493 ~~~~~vq~~w~kl~~---------------~~~dl~~~~~~-e~~~a----------~~~~~l~~~~s~lisead 541 (555)
.++..|+.+|.++.. .||+++.+-.. .+... .+..+++..+...|..-|
T Consensus 4 ~~~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld 78 (151)
T 2c0k_A 4 EEVNDIKRTWEVVAAKMTEAGVEMLKRYFKKYPHNLNHFPWFKEIPFDDLPENARFKTHGTRILRQVDEGVKALS 78 (151)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHCGGGGGGCHHHHTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHCHHHHHHHHHhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788888888754 58999988763 23333 477778887777666544
No 129
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=26.94 E-value=1.4e+02 Score=24.20 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=50.3
Q ss_pred HHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-cCCcEEEEecCCCCC-Cc
Q 008751 12 AAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNIT-LP 89 (555)
Q Consensus 12 iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-SKrPIILtCND~n~~-L~ 89 (555)
+-...||.|...+...+- ...+......+||+|- +.+ ..+...+..+-+. ...|||+++...... ..
T Consensus 23 ~L~~~g~~v~~~~~~~~a------~~~l~~~~~dlvi~d~---~~~--~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~ 91 (142)
T 2qxy_A 23 ALEKDGFNVIWAKNEQEA------FTFLRREKIDLVFVDV---FEG--EESLNLIRRIREEFPDTKVAVLSAYVDKDLII 91 (142)
T ss_dssp HHGGGTCEEEEESSHHHH------HHHHTTSCCSEEEEEC---TTT--HHHHHHHHHHHHHCTTCEEEEEESCCCHHHHH
T ss_pred HHHhCCCEEEEECCHHHH------HHHHhccCCCEEEEeC---CCC--CcHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Confidence 334578877744322111 0111223578999986 322 2234445444443 358999998875421 11
Q ss_pred Cccc--eeEEEecCCCHHHHHHHHHHHHHH
Q 008751 90 DSLD--RLEVSFTMPMPKDLLSHLQMICAA 117 (555)
Q Consensus 90 ~l~~--~l~I~FkrPs~~eI~srL~~Ic~k 117 (555)
..+. ...+-.++.+..++...+..+...
T Consensus 92 ~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 92 NSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp HHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 1111 123334455788888888887654
No 130
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=26.74 E-value=54 Score=28.66 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHc------------------cccccccchhhc-CCC------hhhHHHhhhccccccch
Q 008751 493 EAIDLVRESWKKLRD------------------GNTDLRQYATLE-KPN------AFQIIKLTHGMCDLISE 539 (555)
Q Consensus 493 ~~~~~vq~~w~kl~~------------------~~~dl~~~~~~e-~~~------a~~~~~l~~~~s~lise 539 (555)
.++..||.+|.++.. .||+++.+-..- +.+ ..|..+++..+...|.-
T Consensus 7 ~~~~~V~~sw~~v~~~~~~~~~~g~~~y~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ 78 (145)
T 1x9f_B 7 LEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAIST 78 (145)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhChHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888853 479999888631 222 35677777777766653
No 131
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=26.68 E-value=24 Score=36.15 Aligned_cols=28 Identities=14% Similarity=0.437 Sum_probs=23.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek 72 (555)
+-++||+||+|.|.+ .||...+.+++..
T Consensus 203 ~~~~lVlDEah~~~~--~gf~~~~~~i~~~ 230 (434)
T 2db3_A 203 DTRFVVLDEADRMLD--MGFSEDMRRIMTH 230 (434)
T ss_dssp TCCEEEEETHHHHTS--TTTHHHHHHHHHC
T ss_pred cCCeEEEccHhhhhc--cCcHHHHHHHHHh
Confidence 457999999998875 4788888888875
No 132
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=26.10 E-value=1.3e+02 Score=25.19 Aligned_cols=98 Identities=14% Similarity=0.016 Sum_probs=50.9
Q ss_pred HHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCCCCC
Q 008751 11 EAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNIT 87 (555)
Q Consensus 11 ~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~n~~ 87 (555)
.+-+..||.|.......+- ...+....+.+||+|=- |.+.+ ++..+..+-+. ...|||+++...+..
T Consensus 25 ~~L~~~g~~v~~~~~~~~a------l~~l~~~~~dlii~D~~--l~~~~--g~~~~~~lr~~~~~~~~pii~~s~~~~~~ 94 (154)
T 3gt7_A 25 HILEETGYQTEHVRNGREA------VRFLSLTRPDLIISDVL--MPEMD--GYALCRWLKGQPDLRTIPVILLTILSDPR 94 (154)
T ss_dssp HHHHTTTCEEEEESSHHHH------HHHHTTCCCSEEEEESC--CSSSC--HHHHHHHHHHSTTTTTSCEEEEECCCSHH
T ss_pred HHHHHCCCEEEEeCCHHHH------HHHHHhCCCCEEEEeCC--CCCCC--HHHHHHHHHhCCCcCCCCEEEEECCCChH
Confidence 3445568877554321110 01112235789999843 11111 34444444432 467999998765421
Q ss_pred -CcCccc-e-eEEEecCCCHHHHHHHHHHHHHHc
Q 008751 88 -LPDSLD-R-LEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 88 -L~~l~~-~-l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
....+. . ..+-.++.+..++...+..++...
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 95 DVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp HHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 111122 1 344445557888888888887553
No 133
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.83 E-value=58 Score=26.22 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 008751 103 MPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (555)
Q Consensus 103 s~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~ 150 (555)
+..+....|+.+- =.++..+|+.++..++||+-+||+.|=-+..
T Consensus 17 ~~~~~v~~L~~MF----P~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 17 EFNQAMDDFKTMF----PNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp CSHHHHHHHHHHC----SSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC----CCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 3344444444431 2689999999999999999999998754443
No 134
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=25.59 E-value=2.6e+02 Score=22.45 Aligned_cols=70 Identities=11% Similarity=0.063 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCcEEEEecCCCC-CCcCccc-e-eEEEecCCCHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNI-TLPDSLD-R-LEVSFTMPMPKDLLSHLQMICA 116 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrPIILtCND~n~-~L~~l~~-~-l~I~FkrPs~~eI~srL~~Ic~ 116 (555)
...+||+|--- .+.+ +...+..+-+ ....|||+++..... .....+. . ..+-.++.+..++...+..+..
T Consensus 51 ~~dlii~d~~l--~~~~--g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 51 FSGVVLLDIMM--PGMD--GWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CCEEEEEESCC--SSSC--HHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC--CCCC--HHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 46799998431 1111 2334444443 245799999887653 2223333 2 3344455578888888887764
No 135
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=25.55 E-value=1.1e+02 Score=33.50 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=26.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrPIILtCND~n 85 (555)
+-++|||||+|.+ |.+|...+..+.+ ..++++|+.+-...
T Consensus 277 ~~~~iViDEah~~---~~~~~~~~~~i~~~l~~~~~q~il~SAT~~ 319 (618)
T 2whx_A 277 NYNLIVMDEAHFT---DPCSVAARGYISTRVEMGEAAAIFMTATPP 319 (618)
T ss_dssp CCSEEEEESTTCC---SHHHHHHHHHHHHHHHHTSCEEEEECSSCT
T ss_pred CCeEEEEECCCCC---CccHHHHHHHHHHHhcccCccEEEEECCCc
Confidence 5689999999998 4555554444443 34566777665543
No 136
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=25.51 E-value=14 Score=36.33 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
.-++|||||+|.|.+ ..||...+..+++.. ++++|+.+-.
T Consensus 235 ~l~~lVlDEad~l~~-~~~~~~~~~~i~~~~~~~~q~i~~SAT 276 (300)
T 3fmo_B 235 KIKVFVLDEADVMIA-TQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (300)
T ss_dssp GCSEEEETTHHHHHH-STTHHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hceEEEEeCHHHHhh-ccCcHHHHHHHHHhCCCCCEEEEEecc
Confidence 457999999998874 246777777777542 3455555443
No 137
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=25.21 E-value=63 Score=28.39 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHc------------------cccccccchhhcC-CCh------hhHHHhhhccccccc
Q 008751 493 EAIDLVRESWKKLRD------------------GNTDLRQYATLEK-PNA------FQIIKLTHGMCDLIS 538 (555)
Q Consensus 493 ~~~~~vq~~w~kl~~------------------~~~dl~~~~~~e~-~~a------~~~~~l~~~~s~lis 538 (555)
..+..||.+|.++.. .||+++.+-..-+ ... .|..+++..+...|.
T Consensus 5 ~~~~~V~~sw~~v~~~~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~ 75 (145)
T 1yhu_A 5 LERAKVKDEWAKAYGIGAARSKFGDALWRNVFNYAPNARDIFESVNSKDMASPEFKAHIARVLGGLDRVIS 75 (145)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456778888888855 3899998886321 111 466777777666654
No 138
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=24.00 E-value=12 Score=34.97 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
+-++||+||+|.+.+ .||...+..+++.. ++++|+.+-.
T Consensus 176 ~~~~lViDEah~l~~--~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 176 RTTYLVLDEADRMLD--MGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp TCCEEEETTHHHHHH--TTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred cccEEEEeCHHHHhh--hCcHHHHHHHHHhCCccceEEEEEee
Confidence 457999999998875 45777888877653 3455554433
No 139
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=24.00 E-value=87 Score=33.23 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=48.5
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCCCCCcCcc--ceeEEEecCCCHHHHHHHHHHHHHHcCC-
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSL--DRLEVSFTMPMPKDLLSHLQMICAAEKV- 120 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n~~L~~l~--~~l~I~FkrPs~~eI~srL~~Ic~kEgl- 120 (555)
+-|||+|+|+.. +.-.| .......||+|+.+... .... ....+.....+..+....+...+.....
T Consensus 244 r~LlVLDdv~~~---~~~~~------~~~~gs~ilvTTR~~~v--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 312 (549)
T 2a5y_B 244 NTLFVFDDVVQE---ETIRW------AQELRLRCLVTTRDVEI--SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG 312 (549)
T ss_dssp TEEEEEEEECCH---HHHHH------HHHTTCEEEEEESBGGG--GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--
T ss_pred cEEEEEECCCCc---hhhcc------cccCCCEEEEEcCCHHH--HHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCc
Confidence 779999999873 21112 22245679999987542 1111 1245777778888777766665432211
Q ss_pred CCCHHHHHHHHHHcCCcH
Q 008751 121 ELQQHLLVQLIESCRADI 138 (555)
Q Consensus 121 ~Id~~~L~~Li~~S~GDI 138 (555)
.-..+...+|++.++|--
T Consensus 313 ~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 313 EKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp CHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHhCCCh
Confidence 111245677777777643
No 140
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=23.59 E-value=1.3e+02 Score=30.91 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=25.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n 85 (555)
+-.+|||||+|.+...-...+..+..+....++++|+.+-.+.
T Consensus 93 ~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~ 135 (431)
T 2v6i_A 93 NYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPP 135 (431)
T ss_dssp CCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCT
T ss_pred CCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 4589999999998322112233444444344566666665543
No 141
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=23.25 E-value=67 Score=29.17 Aligned_cols=42 Identities=14% Similarity=0.341 Sum_probs=26.6
Q ss_pred CCcEEEEeCCCCCCccc--------------HHHHHHHHHHHHHcCCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPED--------------RGFIAGIQQIAEKAKGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eD--------------rGf~sAL~~liekSKrPIILtCND~ 84 (555)
+.++|||||+-.+...+ +.++..|.++++...++||+++...
T Consensus 119 ~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 119 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred CceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 57899999998775421 1244456666666788888887543
No 142
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=23.00 E-value=40 Score=32.84 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=28.9
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
..-++||+||+|.+.+ +.+++..+..++... .+++|+.+-.
T Consensus 151 ~~~~~vViDEaH~~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT 193 (391)
T 1xti_A 151 KHIKHFILDECDKMLE-QLDMRRDVQEIFRMTPHEKQVMMFSAT 193 (391)
T ss_dssp TTCSEEEECSHHHHTS-SHHHHHHHHHHHHTSCSSSEEEEEESS
T ss_pred cccCEEEEeCHHHHhh-ccchHHHHHHHHhhCCCCceEEEEEee
Confidence 3567999999998876 367888888887653 3456655544
No 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=22.63 E-value=84 Score=32.65 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.3
Q ss_pred CCcEEEEeCCCCCCcc------c----HHHHHHHHHHHHHcCCcEEEEec
Q 008751 43 VKPLILIEDVDVFFPE------D----RGFIAGIQQIAEKAKGPVILTSN 82 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e------D----rGf~sAL~~liekSKrPIILtCN 82 (555)
+.++||||++..+... + ..+...|..+++...+|||+++-
T Consensus 313 ~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 313 GLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp CCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 5689999999988742 2 23445677777788999999975
No 144
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=21.73 E-value=1.1e+02 Score=24.54 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=49.3
Q ss_pred HHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH---cCCcEEEEecCCCCC
Q 008751 11 EAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNIT 87 (555)
Q Consensus 11 ~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek---SKrPIILtCND~n~~ 87 (555)
.+.+..||.|++.. +..+ ....+....+.+||+|=- |.+.+ +...+.++-+. ...|||+++......
T Consensus 20 ~~l~~~g~~v~~~~--~~~~----al~~l~~~~~dlvllD~~--~p~~~--g~~~~~~l~~~~~~~~~pii~~s~~~~~~ 89 (122)
T 3gl9_A 20 FNLKKEGYEVIEAE--NGQI----ALEKLSEFTPDLIVLXIM--MPVMD--GFTVLKKLQEKEEWKRIPVIVLTAKGGEE 89 (122)
T ss_dssp HHHHHTTCEEEEES--SHHH----HHHHHTTBCCSEEEECSC--CSSSC--HHHHHHHHHTSTTTTTSCEEEEESCCSHH
T ss_pred HHHHHCCcEEEEeC--CHHH----HHHHHHhcCCCEEEEecc--CCCCc--HHHHHHHHHhcccccCCCEEEEecCCchH
Confidence 34456789887543 3211 000112235679999732 22222 34445544332 357999998765421
Q ss_pred C-cCccc-e-eEEEecCCCHHHHHHHHHHHH
Q 008751 88 L-PDSLD-R-LEVSFTMPMPKDLLSHLQMIC 115 (555)
Q Consensus 88 L-~~l~~-~-l~I~FkrPs~~eI~srL~~Ic 115 (555)
. ...+. . ..+-.++.+..++..++..+.
T Consensus 90 ~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 90 DESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 1 11111 1 334445557888888887765
No 145
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=21.64 E-value=27 Score=37.11 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=26.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc---------CCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---------KGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS---------KrPIILtCND~ 84 (555)
.-.+||+||||.|.+ .||...+..++... .+++|+.+-..
T Consensus 175 ~~~~lViDEah~l~~--~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~ 223 (579)
T 3sqw_A 175 FVDYKVLDEADRLLE--IGFRDDLETISGILNEKNSKSADNIKTLLFSATL 223 (579)
T ss_dssp TCCEEEEETHHHHTS--TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSC
T ss_pred cCCEEEEEChHHhhc--CCCHHHHHHHHHHhhhhhcccccCceEEEEeccC
Confidence 457999999998874 35666666655432 44666655443
No 146
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=21.24 E-value=1.1e+02 Score=30.82 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=27.7
Q ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCC
Q 008751 45 PLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNN 85 (555)
Q Consensus 45 kLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n 85 (555)
.++||||++.=.+ ...+..|.++++.. .+-||+|+.+..
T Consensus 317 ~~LlLDEpt~~LD--~~~~~~l~~~L~~l~~~~~vi~itH~~~ 357 (415)
T 4aby_A 317 PSVVFDEVDAGIG--GAAAIAVAEQLSRLADTRQVLVVTHLAQ 357 (415)
T ss_dssp SEEEESSTTTTCC--HHHHHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred CEEEEECCCCCCC--HHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 8999999995443 34456666666654 367999998863
No 147
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=20.75 E-value=1.9e+02 Score=37.71 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=71.3
Q ss_pred hhHHHhhCCCceEEEeCCCccccc---ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHH-------Hc-----
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENS---HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAE-------KA----- 73 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn---~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~lie-------kS----- 73 (555)
.-.+|+.+|..++-+|.+++..-. ....|... ....++|||+|.+..+ ..++|.+.+. ..
T Consensus 662 vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~--~Gaw~~~DE~nr~~~e---vLs~l~~~l~~i~~al~~~~~~i~ 736 (2695)
T 4akg_A 662 VKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQ--IGAWGCFDEFNRLDEK---VLSAVSANIQQIQNGLQVGKSHIT 736 (2695)
T ss_dssp HHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHH--HTCEEEEETTTSSCHH---HHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHh--cCCEeeehhhhhcChH---HHHHHHHHHHHHHHHHHcCCcEEe
Confidence 457999999999999999865311 11112111 1368999999999664 5555533322 11
Q ss_pred ----------CCcEEEEecCC---CCCCcCccc--eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008751 74 ----------KGPVILTSNSN---NITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIE 132 (555)
Q Consensus 74 ----------KrPIILtCND~---n~~L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~ 132 (555)
.+-|++|.|.- ...+|+.+. ...|.+..|+.+.+...+ ..++|+........+++.
T Consensus 737 ~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~---l~s~Gf~~a~~la~kiv~ 807 (2695)
T 4akg_A 737 LLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMI---LQIMGFEDSKSLASKIVH 807 (2695)
T ss_dssp CSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHH---HHHHHCSSHHHHHHHHHH
T ss_pred eCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHH---HHhcCCCchHHHHHHHHH
Confidence 12266677743 235666443 367899999987766554 345677766666655544
No 148
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=20.73 E-value=14 Score=34.82 Aligned_cols=60 Identities=3% Similarity=0.039 Sum_probs=32.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHH--HHHHHHHHc---CCcEEEEecCCCCCCcCccce--eEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIA--GIQQIAEKA---KGPVILTSNSNNITLPDSLDR--LEVSFTMP 102 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~s--AL~~liekS---KrPIILtCND~n~~L~~l~~~--l~I~FkrP 102 (555)
+..+|||||++.++........ .+...++.. ..-|||+.+.....-..++++ ..++|.+|
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 4789999999999542100111 122222222 236899999854322234454 45556554
No 149
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=20.62 E-value=80 Score=27.70 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHc---------------cccccccchhh-cCCC------hhhHHHhhhccccccchh
Q 008751 493 EAIDLVRESWKKLRD---------------GNTDLRQYATL-EKPN------AFQIIKLTHGMCDLISEA 540 (555)
Q Consensus 493 ~~~~~vq~~w~kl~~---------------~~~dl~~~~~~-e~~~------a~~~~~l~~~~s~lisea 540 (555)
.++..|+++|.++.. .||+++.+-.. .+.. ..|..+++..+...|..-
T Consensus 6 ~~~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~~~~~~h~~~v~~al~~~v~~l 75 (143)
T 1out_A 6 KDKSVVKAFWGKISGKADVVGAEALGRMLTAYPQTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLM 75 (143)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHCccHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhH
Confidence 456778888887743 58999988863 1222 256677777776665543
No 150
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=20.53 E-value=73 Score=27.84 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHc---------------cccccccchhhc-CCC------hhhHHHhhhccccccchh
Q 008751 493 EAIDLVRESWKKLRD---------------GNTDLRQYATLE-KPN------AFQIIKLTHGMCDLISEA 540 (555)
Q Consensus 493 ~~~~~vq~~w~kl~~---------------~~~dl~~~~~~e-~~~------a~~~~~l~~~~s~lisea 540 (555)
.++..|+.+|.++.. .||+++.+-..- +.+ ..|..+++..+...|..-
T Consensus 5 ~~~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~n~~~~~h~~~v~~al~~~v~~l 74 (141)
T 1cg5_A 5 QNKKAIEELGNLIKANAEAWGADALARLFELHPQTKTYFSKFSGFEACNEQVKKHGKRVMNALADATHHL 74 (141)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHCchHHHHhHHhCCCCCCCHhHHHHHHHHHHHHHHHHHhH
Confidence 456778888887743 689999988631 222 257777877777766543
No 151
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=20.48 E-value=30 Score=36.24 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=19.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liek 72 (555)
.-++|||||||.|.+ .||...+..++..
T Consensus 226 ~~~~lViDEah~l~~--~~f~~~~~~i~~~ 253 (563)
T 3i5x_A 226 FVDYKVLDEADRLLE--IGFRDDLETISGI 253 (563)
T ss_dssp TCCEEEEETHHHHTS--TTTHHHHHHHHHH
T ss_pred cceEEEEeCHHHHhc--cchHHHHHHHHHh
Confidence 457999999998874 3466665555543
No 152
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=20.04 E-value=80 Score=23.97 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 121 ELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 121 ~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
.++...+...+..++||+-++++.|
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~L 41 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLL 41 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5788999999999999999999886
Done!