Query 008751
Match_columns 555
No_of_seqs 170 out of 1086
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 10:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008751.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008751hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sxja2 c.37.1.20 (A:295-547) 99.7 1E-17 7.3E-22 157.3 15.8 146 9-154 69-236 (253)
2 d1sxjb2 c.37.1.20 (B:7-230) Re 99.7 3.4E-18 2.5E-22 159.7 9.2 142 10-154 54-212 (224)
3 d1njfa_ c.37.1.20 (A:) delta p 99.6 9.2E-16 6.7E-20 145.6 13.5 136 12-151 78-223 (239)
4 d1sxjc2 c.37.1.20 (C:12-238) R 99.6 4.2E-16 3.1E-20 144.7 10.3 142 9-153 52-209 (227)
5 d1iqpa2 c.37.1.20 (A:2-232) Re 99.6 7E-16 5.1E-20 143.9 9.5 141 9-152 62-218 (231)
6 d1sxjd2 c.37.1.20 (D:26-262) R 99.6 3.6E-15 2.6E-19 138.0 11.7 141 9-152 50-217 (237)
7 d1sxje2 c.37.1.20 (E:4-255) Re 99.5 1.8E-14 1.3E-18 134.4 10.8 109 42-153 130-242 (252)
8 d1ixsb2 c.37.1.20 (B:4-242) Ho 99.3 1.7E-11 1.2E-15 114.3 14.6 136 9-149 52-212 (239)
9 d1a5ta2 c.37.1.20 (A:1-207) de 99.3 2.7E-12 2E-16 120.0 9.0 128 11-146 67-206 (207)
10 d1in4a2 c.37.1.20 (A:17-254) H 99.3 8.1E-12 5.9E-16 116.2 10.4 138 9-149 52-211 (238)
11 d1svma_ c.37.1.20 (A:) Papillo 98.3 2.7E-09 2E-13 108.3 -8.9 141 9-149 171-334 (362)
12 d2gnoa2 c.37.1.20 (A:11-208) g 97.9 2.1E-06 1.5E-10 79.5 3.2 126 18-148 47-190 (198)
13 d1l8qa2 c.37.1.20 (A:77-289) C 97.8 3.5E-05 2.6E-09 71.6 10.7 102 43-147 97-212 (213)
14 d1ixza_ c.37.1.20 (A:) AAA dom 97.6 2.9E-05 2.1E-09 73.9 6.2 141 8-149 58-229 (247)
15 d1w5sa2 c.37.1.20 (A:7-293) CD 97.4 4.9E-05 3.6E-09 69.2 4.2 107 43-149 132-264 (287)
16 d1e32a2 c.37.1.20 (A:201-458) 97.1 0.00018 1.3E-08 68.1 4.5 137 8-145 54-218 (258)
17 d1lv7a_ c.37.1.20 (A:) AAA dom 96.9 0.00074 5.4E-08 64.4 7.3 137 8-145 61-228 (256)
18 d1fnna2 c.37.1.20 (A:1-276) CD 96.8 0.0018 1.3E-07 58.2 8.8 107 43-149 124-250 (276)
19 d1r7ra3 c.37.1.20 (A:471-735) 96.3 0.00071 5.1E-08 64.4 2.7 137 8-147 57-226 (265)
20 d1d2na_ c.37.1.20 (A:) Hexamer 95.9 0.0018 1.3E-07 61.0 3.0 137 9-151 57-224 (246)
21 d1r6bx3 c.37.1.20 (X:437-751) 91.4 0.6 4.3E-05 44.6 11.3 132 8-143 68-273 (315)
22 d1qvra3 c.37.1.20 (A:536-850) 89.7 0.35 2.5E-05 46.5 7.9 133 9-144 70-279 (315)
23 d1ye8a1 c.37.1.11 (A:1-178) Hy 88.3 0.24 1.7E-05 41.6 4.9 44 42-85 98-141 (178)
24 d1ofha_ c.37.1.20 (A:) HslU {H 87.5 0.21 1.5E-05 47.6 4.5 103 8-111 65-210 (309)
25 d1r6bx2 c.37.1.20 (X:169-436) 83.1 1 7.4E-05 42.6 7.0 132 16-147 73-236 (268)
26 d1sxje1 a.80.1.1 (E:256-354) R 82.3 0.11 8E-06 43.2 -0.3 47 190-242 3-49 (99)
27 d1ny5a2 c.37.1.20 (A:138-384) 82.2 2.8 0.0002 38.4 9.6 106 43-151 94-232 (247)
28 d1yksa1 c.37.1.14 (A:185-324) 77.8 1.2 8.7E-05 35.1 4.7 40 42-81 97-136 (140)
29 d1qvra2 c.37.1.20 (A:149-535) 62.4 8.5 0.00062 37.7 8.0 135 16-150 77-242 (387)
30 d1xhfa1 c.23.1.1 (A:2-122) Aer 59.9 4.4 0.00032 32.7 4.5 97 10-116 19-118 (121)
31 d1veca_ c.37.1.19 (A:) DEAD bo 59.8 1.4 9.8E-05 39.2 1.3 37 43-81 146-184 (206)
32 d2fnaa2 c.37.1.20 (A:1-283) Ar 58.9 15 0.0011 31.3 8.3 100 43-145 136-248 (283)
33 d2a9pa1 c.23.1.1 (A:2-118) DNA 58.5 2.7 0.00019 33.9 2.8 98 9-116 16-116 (117)
34 d1zesa1 c.23.1.1 (A:3-123) Pho 51.8 9.6 0.0007 30.4 5.3 97 10-116 17-119 (121)
35 d1ys7a2 c.23.1.1 (A:7-127) Tra 51.6 25 0.0018 28.0 7.9 100 10-119 18-121 (121)
36 d1a1va1 c.37.1.14 (A:190-325) 49.7 8.4 0.00061 30.7 4.6 16 43-58 94-109 (136)
37 d1s2ma1 c.37.1.19 (A:46-251) P 47.1 3.6 0.00026 36.0 1.9 37 43-81 143-181 (206)
38 d1fada_ a.77.1.2 (A:) FADD (Mo 46.0 19 0.0014 27.7 6.0 53 101-153 3-65 (95)
39 d1um8a_ c.37.1.20 (A:) ClpX {H 44.1 16 0.0012 35.2 6.4 62 10-71 86-172 (364)
40 d2bmfa2 c.37.1.14 (A:178-482) 43.9 12 0.00089 33.2 5.1 41 43-83 100-140 (305)
41 d2a5yb3 c.37.1.20 (B:109-385) 42.0 15 0.0011 33.4 5.5 86 43-138 135-222 (277)
42 d1g8pa_ c.37.1.20 (A:) ATPase 39.6 13 0.00093 34.4 4.7 26 44-72 128-153 (333)
43 d1t6na_ c.37.1.19 (A:) Spliceo 38.9 7.4 0.00054 34.1 2.7 41 43-84 145-187 (207)
44 d2gf5a1 a.77.1.2 (A:89-191) FA 37.9 35 0.0026 26.4 6.5 54 101-154 3-66 (103)
45 d2j0sa1 c.37.1.19 (A:22-243) P 37.6 3.9 0.00028 36.8 0.5 40 43-84 159-200 (222)
46 d2g9na1 c.37.1.19 (A:21-238) I 37.5 4.3 0.00031 36.2 0.8 40 43-84 155-196 (218)
47 d1mb3a_ c.23.1.1 (A:) Cell div 37.2 10 0.00076 30.2 3.2 97 10-116 18-120 (123)
48 d1qkka_ c.23.1.1 (A:) Transcri 36.5 15 0.0011 30.1 4.1 99 10-118 17-119 (140)
49 d1q0ua_ c.37.1.19 (A:) Probabl 35.2 3.5 0.00026 35.7 -0.2 39 43-83 147-187 (209)
50 d1qdea_ c.37.1.19 (A:) Initiat 34.6 4.2 0.00031 36.1 0.2 37 43-81 151-189 (212)
51 d1wp9a1 c.37.1.19 (A:1-200) pu 34.3 19 0.0014 30.0 4.6 38 42-80 124-161 (200)
52 d1hv8a1 c.37.1.19 (A:3-210) Pu 31.0 5.2 0.00038 35.1 0.2 37 43-81 145-183 (208)
53 d2b4aa1 c.23.1.1 (A:2-119) Hyp 30.4 1.1E+02 0.0077 24.0 8.5 93 10-113 19-114 (118)
54 d1wgla_ a.5.2.4 (A:) Toll-inte 29.4 18 0.0013 26.9 3.0 29 121-149 22-50 (59)
55 d1sxja1 a.80.1.1 (A:548-693) R 29.1 1.7 0.00013 37.7 -3.3 44 166-210 2-50 (146)
56 d2k0bx1 a.5.2.1 (X:1-52) Seque 28.9 14 0.001 26.9 2.2 32 116-147 18-49 (52)
57 d1zgza1 c.23.1.1 (A:2-121) Tor 26.2 45 0.0032 26.0 5.3 98 10-117 18-118 (120)
58 d1wb9a2 c.37.1.12 (A:567-800) 24.4 43 0.0032 29.9 5.4 42 42-83 119-163 (234)
59 d1myta_ a.1.1.2 (A:) Myoglobin 24.0 14 0.001 30.5 1.8 24 494-517 2-40 (146)
60 d1mn3a_ a.5.2.4 (A:) Vacuolar 23.0 24 0.0018 25.7 2.6 25 121-145 25-49 (54)
61 d1wrba1 c.37.1.19 (A:164-401) 21.5 6.5 0.00047 35.4 -1.1 30 43-74 172-201 (238)
62 g1f2t.1 c.37.1.12 (A:,B:) Rad5 21.2 38 0.0028 29.0 4.2 41 43-85 225-268 (292)
63 d2pl1a1 c.23.1.1 (A:1-119) Pho 20.9 79 0.0058 24.6 5.9 98 10-117 17-118 (119)
64 d1krwa_ c.23.1.1 (A:) NTRC rec 20.7 55 0.004 25.7 4.8 96 11-116 21-120 (123)
65 d1jbea_ c.23.1.1 (A:) CheY pro 20.5 39 0.0028 26.8 3.8 75 42-120 48-128 (128)
No 1
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.74 E-value=1e-17 Score=157.27 Aligned_cols=146 Identities=24% Similarity=0.327 Sum_probs=122.9
Q ss_pred hhHHHhhCCCceEEEeCCCcccc-------cccc-----cc--------cCCCCCCcEEEEeCCCCCCcccHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN-------SHGV-----MG--------KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQ 68 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r-------n~~v-----~g--------sl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~ 68 (555)
..++|+++|++++++|+++.++. .... .. .....+..+|++||+|.++..+++++..+.+
T Consensus 69 a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~ 148 (253)
T d1sxja2 69 AHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQ 148 (253)
T ss_dssp HHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHH
T ss_pred HHHHHHHHHhhhhccccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhh
Confidence 45899999999999999996642 0000 00 0112356799999999999999999999999
Q ss_pred HHHHcCCcEEEEecCCCC-CCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 69 IAEKAKGPVILTSNSNNI-TLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 69 liekSKrPIILtCND~n~-~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
+.....+|||+|||+.+. .+.++++ +..|+|.+|+..++..+|+.||.+||+.++++.++.|+..++||||++||.||
T Consensus 149 ~~~~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~GDiR~ai~~L~ 228 (253)
T d1sxja2 149 FCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLS 228 (253)
T ss_dssp HHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred hhcccccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999999999864 4444444 58999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCC
Q 008751 147 FWCQNKGY 154 (555)
Q Consensus 147 f~s~s~~~ 154 (555)
+++...+.
T Consensus 229 ~~~~~~~~ 236 (253)
T d1sxja2 229 TISTTTKT 236 (253)
T ss_dssp HHHHHSSC
T ss_pred HHHHcCCC
Confidence 99887653
No 2
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.72 E-value=3.4e-18 Score=159.73 Aligned_cols=142 Identities=17% Similarity=0.155 Sum_probs=114.4
Q ss_pred hHHHhhCC-----CceEEEeCCCccccc-------cc--ccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--c
Q 008751 10 CEAAQHAD-----DEVVEVIHIPDDENS-------HG--VMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--A 73 (555)
Q Consensus 10 ~~iAkelG-----y~VIELNASDdR~rn-------~~--v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--S 73 (555)
..+|++++ ++++|+|++|.|+.. .. ........++++||+||+|.++.. .+.+|...++. .
T Consensus 54 ~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~---~~~~ll~~~e~~~~ 130 (224)
T d1sxjb2 54 HCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG---AQQALRRTMELYSN 130 (224)
T ss_dssp HHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH---HHHTTHHHHHHTTT
T ss_pred HHHHHHHhccccccccccccccccCCceehhhHHHHHHHhhccCCCcceEEEEEecccccchh---HHHHHhhhcccccc
Confidence 34566654 669999999987531 11 111122346789999999999886 35677777776 3
Q ss_pred CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 74 KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 74 KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
.+++|++||+.++.++++++ |..|+|++|+..++..+|..||.+||+.++++.++.|+..++||+|++||.||+++.+.
T Consensus 131 ~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~~ 210 (224)
T d1sxjb2 131 STRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH 210 (224)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ceeeeeccCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Confidence 45799999998877777776 68999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 008751 153 GY 154 (555)
Q Consensus 153 ~~ 154 (555)
+.
T Consensus 211 ~~ 212 (224)
T d1sxjb2 211 GL 212 (224)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 3
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=99.63 E-value=9.2e-16 Score=145.62 Aligned_cols=136 Identities=11% Similarity=0.089 Sum_probs=110.3
Q ss_pred HHhhCCCceEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEec
Q 008751 12 AAQHADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSN 82 (555)
Q Consensus 12 iAkelGy~VIELNASDdR~r-------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCN 82 (555)
+......+++|+|+++.+.. ....... ..+++++|||||||.|.. +.+.+|.++++. ..+.|||+||
T Consensus 78 i~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~-~~~~~kviiIde~d~l~~---~~q~~Llk~lE~~~~~~~~il~tn 153 (239)
T d1njfa_ 78 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-ARGRFKVYLIDEVHMLSR---HSFNALLKTLEEPPEHVKFLLATT 153 (239)
T ss_dssp HHHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSC-SSSSSEEEEEETGGGSCH---HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred HHcCCCCeEEEecchhcCCHHHHHHHHHHHHhcc-ccCCCEEEEEECcccCCH---HHHHHHHHHHhcCCCCeEEEEEcC
Confidence 33444467999999985431 1111222 234678999999999975 467899999986 4567999999
Q ss_pred CCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 008751 83 SNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (555)
Q Consensus 83 D~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s 151 (555)
+.+..++.+++ |..++|.+|+.+++..++..||.+||+.++++.++.|+..++||+|++||.||.....
T Consensus 154 ~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~ 223 (239)
T d1njfa_ 154 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS 223 (239)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99887787887 7899999999999999999999999999999999999999999999999999865443
No 4
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.62 E-value=4.2e-16 Score=144.72 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=110.5
Q ss_pred hhHHHhhCC-----CceEEEeCCCcccc--------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--
Q 008751 9 LCEAAQHAD-----DEVVEVIHIPDDEN--------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-- 73 (555)
Q Consensus 9 ~~~iAkelG-----y~VIELNASDdR~r--------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-- 73 (555)
...+|++++ +.++|.|+++.++. ...........++++|||||+|.++.. .+.+|.++++..
T Consensus 52 ~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~---~~~~Ll~~le~~~~ 128 (227)
T d1sxjc2 52 IVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA---AQNALRRVIERYTK 128 (227)
T ss_dssp HHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH---HHHHHHHHHHHTTT
T ss_pred HHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhccccccccCCCeEEEEEeccccchhh---HHHHHHHHhhhccc
Confidence 456777754 44899999996642 111222233446789999999999875 355677777753
Q ss_pred CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 74 KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 74 KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
...+|++||.....++.+++ |..++|++|+..++..+|..||.+||+.++++.++.|++.++||+|++||.||.+....
T Consensus 129 ~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~ 208 (227)
T d1sxjc2 129 NTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATL 208 (227)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTT
T ss_pred ceeeccccCcHHHhHHHHHHHHhhhccccccccccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 33466777777766666666 68999999999999999999999999999999999999999999999999999977654
Q ss_pred C
Q 008751 153 G 153 (555)
Q Consensus 153 ~ 153 (555)
.
T Consensus 209 ~ 209 (227)
T d1sxjc2 209 D 209 (227)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=99.60 E-value=7e-16 Score=143.87 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=111.7
Q ss_pred hhHHHhhC-----CCceEEEeCCCccccc--------ccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--
Q 008751 9 LCEAAQHA-----DDEVVEVIHIPDDENS--------HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-- 73 (555)
Q Consensus 9 ~~~iAkel-----Gy~VIELNASDdR~rn--------~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-- 73 (555)
..++|+++ +++++|+||++.+... ..........++.+||+||+|.++.+ .+.+|..+++..
T Consensus 62 a~~iak~l~~~~~~~~~~e~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~---~~~~ll~~l~~~~~ 138 (231)
T d1iqpa2 62 ALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---AQQALRRTMEMFSS 138 (231)
T ss_dssp HHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH---HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcccCCCeeEEecCcccchhHHHHHHHHHHhhhhccCCCceEEeehhhhhcchh---HHHHHhhhcccCCc
Confidence 44677765 4689999999966420 11111122346789999999999876 456788888764
Q ss_pred CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 008751 74 KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (555)
Q Consensus 74 KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf~s~s~ 152 (555)
.+++|++||..+...+.+++ +..++|.+|+..++..+|..+|.+||+.++++.++.|++.++||+|++||.||++....
T Consensus 139 ~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~~ 218 (231)
T d1iqpa2 139 NVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD 218 (231)
T ss_dssp TEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ceEEEeccCChhhchHhHhCccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 45678888888766566665 58899999999999999999999999999999999999999999999999999987654
No 6
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.58 E-value=3.6e-15 Score=138.02 Aligned_cols=141 Identities=12% Similarity=0.153 Sum_probs=109.7
Q ss_pred hhHHHhhC------CCceEEEeCCCcccc--------c----cccc------ccCCCCCCcEEEEeCCCCCCcccHHHHH
Q 008751 9 LCEAAQHA------DDEVVEVIHIPDDEN--------S----HGVM------GKSDNHVKPLILIEDVDVFFPEDRGFIA 64 (555)
Q Consensus 9 ~~~iAkel------Gy~VIELNASDdR~r--------n----~~v~------gsl~~~kkkLILiDEVD~Lf~eDrGf~s 64 (555)
+..+|+++ ++..+|+|+++.+.. + .... ......++++|||||+|.++.+ .+.
T Consensus 50 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~---~~~ 126 (237)
T d1sxjd2 50 ILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD---AQS 126 (237)
T ss_dssp HHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH---HHH
T ss_pred HHHHHHHHcCCcccccchhheeccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHH---HHH
Confidence 44667765 688999999996632 0 0000 0112335679999999999875 345
Q ss_pred HHHHHHHHc--CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Q 008751 65 GIQQIAEKA--KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKT 141 (555)
Q Consensus 65 AL~~liekS--KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqa 141 (555)
++..+++.. .++||++++..++.++++++ +..|+|++|+..++..+|..||.+||+.++++.++.|+..++||+|++
T Consensus 127 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~a 206 (237)
T d1sxjd2 127 ALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRG 206 (237)
T ss_dssp HHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHH
T ss_pred HHhhccccccccccccccccccccccccccchhhhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHH
Confidence 666666653 34577777777777777776 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 008751 142 IMHLQFWCQNK 152 (555)
Q Consensus 142 LN~LQf~s~s~ 152 (555)
||.||+|+...
T Consensus 207 i~~L~~~~~~~ 217 (237)
T d1sxjd2 207 ITLLQSASKGA 217 (237)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 7
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.51 E-value=1.8e-14 Score=134.38 Aligned_cols=109 Identities=15% Similarity=0.277 Sum_probs=93.8
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
.+.++|||||+|.|+.+ ++.++.++++.. ++.||++||+..+.++++++ |..|+|++|+..++..+|..||.+|
T Consensus 130 ~~~~iiiide~d~l~~~---~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e 206 (252)
T d1sxje2 130 HRYKCVIINEANSLTKD---AQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNE 206 (252)
T ss_dssp -CCEEEEEECTTSSCHH---HHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEeccccccccc---cchhhhcccccccccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHc
Confidence 35679999999999775 466777778763 34589999999887777776 5889999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHcCCcHHHHHHHHHHHhhcCC
Q 008751 119 KVELQ-QHLLVQLIESCRADIRKTIMHLQFWCQNKG 153 (555)
Q Consensus 119 gl~Id-~~~L~~Li~~S~GDIRqaLN~LQf~s~s~~ 153 (555)
|+.++ ++.++.|+..++||+|++||.||+++.++.
T Consensus 207 ~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~~~ 242 (252)
T d1sxje2 207 RIQLETKDILKRIAQASNGNLRVSLLMLESMALNNE 242 (252)
T ss_dssp TCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTTT
T ss_pred CCCCCcHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Confidence 99886 688999999999999999999999998754
No 8
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=99.29 E-value=1.7e-11 Score=114.32 Aligned_cols=136 Identities=7% Similarity=0.024 Sum_probs=106.9
Q ss_pred hhHHHhhCCCceEEEeCCCcccc---cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-------------
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK------------- 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r---n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek------------- 72 (555)
..++|+++++++.++|+++.+.. .......+ ...+++++||+|.+.... ..++...++.
T Consensus 52 a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~iDe~~~~~~~~---~~~l~~~~e~~~~~~~~~~~~~~ 126 (239)
T d1ixsb2 52 AHVIAHELGVNLRVTSGPAIEKPGDLAAILANSL--EEGDILFIDEIHRLSRQA---EEHLYPAMEDFVMDIVIGQGPAA 126 (239)
T ss_dssp HHHHHHHHTCCEEEEETTTCCSHHHHHHHHHTTC--CTTCEEEEETGGGCCHHH---HHHHHHHHHHSEEEEECSCTTCC
T ss_pred HHHHHHHhCCCeEeccCCccccchhhHHHHHhhc--cCCCeeeeecccccchhH---HHhhhhhhhhhhhhhhhccchhh
Confidence 45889999999999999996543 11112211 235799999999998753 3444444442
Q ss_pred -------cCCcEEEEecCCCCCCcCcc-c-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Q 008751 73 -------AKGPVILTSNSNNITLPDSL-D-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIM 143 (555)
Q Consensus 73 -------SKrPIILtCND~n~~L~~l~-~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN 143 (555)
.+.++|++||......++.+ . +..++|..|+..++..++..+|.+|++.++++.++.|+..++||+|+++|
T Consensus 127 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~~ 206 (239)
T d1ixsb2 127 RTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKR 206 (239)
T ss_dssp CEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHHH
T ss_pred hhcccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCHHHHHH
Confidence 35679999999875444444 4 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 008751 144 HLQFWC 149 (555)
Q Consensus 144 ~LQf~s 149 (555)
.||...
T Consensus 207 ~l~~~~ 212 (239)
T d1ixsb2 207 LFRRVR 212 (239)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999754
No 9
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=99.28 E-value=2.7e-12 Score=119.99 Aligned_cols=128 Identities=9% Similarity=0.052 Sum_probs=101.4
Q ss_pred HHHhhCCCceEEEeCCCcccc---------cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEE
Q 008751 11 EAAQHADDEVVEVIHIPDDEN---------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVIL 79 (555)
Q Consensus 11 ~iAkelGy~VIELNASDdR~r---------n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIIL 79 (555)
.+.+....++.+++..++... ...........++++|||||||.|+.+ .+.+|.++++. .++-|||
T Consensus 67 ~i~~~~~~~~~~~~~~~~~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~---a~n~Llk~lEep~~~~~fIl 143 (207)
T d1a5ta2 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA---AANALLKTLEEPPAETWFFL 143 (207)
T ss_dssp HHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH---HHHHHHHHHTSCCTTEEEEE
T ss_pred hhhhccccccchhhhhhcccccccchhhHHhhhhhhccccCccceEEechhhhhhhh---hhHHHHHHHHhhcccceeee
Confidence 455566788899987664321 011111122346789999999999875 67899999997 3566999
Q ss_pred EecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 80 TSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 80 tCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
+||+.++.++.+++ |..|+|.+|+.+++..+|. |++.++.+.++.++..++||+|+||+.||
T Consensus 144 ~t~~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~-----~~~~~~~~~~~~i~~~s~Gs~r~al~~le 206 (207)
T d1a5ta2 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLS-----REVTMSQDALLAALRLSAGSPGAALALFQ 206 (207)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH-----HHCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred eecChhhhhhhhcceeEEEecCCCCHHHHHHHHH-----HcCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 99999988888887 6899999999999999884 67889999999999999999999999886
No 10
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=99.25 E-value=8.1e-12 Score=116.21 Aligned_cols=138 Identities=8% Similarity=-0.009 Sum_probs=102.9
Q ss_pred hhHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH----------------
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---------------- 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek---------------- 72 (555)
..++|+++|++++++|+++.+.............++.++++||+|.+... ...++...++.
T Consensus 52 A~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ide~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (238)
T d1in4a2 52 AHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKA---VEELLYSAIEDFQIDIMIGKGPSAKSI 128 (238)
T ss_dssp HHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCHH---HHHHHHHHHHTSCCCC-----------
T ss_pred HHHHHhccCCCcccccCcccccHHHHHHHHHhhccCCchHHHHHHHhhhH---HHhhcccceeeeeeeeeecCccccccc
Confidence 46899999999999999997643110000001235689999999999653 23334444432
Q ss_pred ----cCCcEEEEecCCCCCCcCccce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 008751 73 ----AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (555)
Q Consensus 73 ----SKrPIILtCND~n~~L~~l~~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQ 146 (555)
.++.+|++||......+.++.+ ..+.|+.|+..++..++..++..|++.++++.++.|+..++||+|+++|.||
T Consensus 129 ~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~gd~R~ai~~l~ 208 (238)
T d1in4a2 129 RIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTK 208 (238)
T ss_dssp ----CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred ccCCCCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1334666666665555555553 5789999999999999999999999999999999999999999999999999
Q ss_pred HHh
Q 008751 147 FWC 149 (555)
Q Consensus 147 f~s 149 (555)
.+.
T Consensus 209 ~~~ 211 (238)
T d1in4a2 209 RVR 211 (238)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 11
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=98.29 E-value=2.7e-09 Score=108.31 Aligned_cols=141 Identities=13% Similarity=0.028 Sum_probs=90.7
Q ss_pred hhHHHhhCCCceEEEeCCCcccc------cccccc---------cCCCCCCcEEEEeCCCCCCcccHHHHHHHHH-----
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN------SHGVMG---------KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQ----- 68 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r------n~~v~g---------sl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~----- 68 (555)
...+|+.+|+.++++|||+.|+. .....+ ...+..++++++||+|.|.....|...+...
T Consensus 171 ~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~ 250 (362)
T d1svma_ 171 AAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLN 250 (362)
T ss_dssp HHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSC
T ss_pred HHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHhhcccccCCcchhhhhhhhhc
Confidence 45899999999999999998753 000000 0112345788888888875432232211000
Q ss_pred HHHHcCCcEEEEecCCCCCCcC-ccceeEEEecCC-CHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHcCCcHHHHHHHH
Q 008751 69 IAEKAKGPVILTSNSNNITLPD-SLDRLEVSFTMP-MPKDLLSHLQMICAAEKVELQQHLLVQLI-ESCRADIRKTIMHL 145 (555)
Q Consensus 69 liekSKrPIILtCND~n~~L~~-l~~~l~I~FkrP-s~~eI~srL~~Ic~kEgl~Id~~~L~~Li-~~S~GDIRqaLN~L 145 (555)
......+|+|+|||+....+.+ .+....+.|.+| .......++..|+.+|.+.++.+.|..++ ..+++|+|++|+.+
T Consensus 251 ~~~~~~~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~ 330 (362)
T d1svma_ 251 KRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSR 330 (362)
T ss_dssp CEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHH
T ss_pred hhhhccCCceeecccccccccccccCceEEeecCCCcHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 0111346899999987543333 233344555444 44567788999999999999988887766 55677999999988
Q ss_pred HHHh
Q 008751 146 QFWC 149 (555)
Q Consensus 146 Qf~s 149 (555)
+...
T Consensus 331 ~~~~ 334 (362)
T d1svma_ 331 IVEW 334 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7533
No 12
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.90 E-value=2.1e-06 Score=79.51 Aligned_cols=126 Identities=9% Similarity=0.069 Sum_probs=79.2
Q ss_pred CceEEEeCCC-ccc----c---cccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH--cCCcEEEEecCCCCC
Q 008751 18 DEVVEVIHIP-DDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (555)
Q Consensus 18 y~VIELNASD-dR~----r---n~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek--SKrPIILtCND~n~~ 87 (555)
-+++++++.. .++ | ......+ ..++++++||||||.|..+ .+.||.++++. .++-|||+||+.+..
T Consensus 47 ~D~~~i~~~~~~I~Id~IR~i~~~~~~~~-~~~~~KviIId~ad~l~~~---aqNaLLK~LEEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 47 SDVLEIDPEGENIGIDDIRTIKDFLNYSP-ELYTRKYVIVHDCERMTQQ---AANAFLKALEEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp TTEEEECCSSSCBCHHHHHHHHHHHTSCC-SSSSSEEEEETTGGGBCHH---HHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHhhCc-ccCCCEEEEEeCccccchh---hhhHHHHHHhCCCCCceeeeccCChhhC
Confidence 3799999853 221 1 1111222 2346789999999999875 67899999995 456799999999988
Q ss_pred CcCccc-eeEEEecCCCHHH--HHHHHHHHHHHc-----CCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 008751 88 LPDSLD-RLEVSFTMPMPKD--LLSHLQMICAAE-----KVELQQHLLVQLIESCRADIRKTIMHLQFW 148 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~e--I~srL~~Ic~kE-----gl~Id~~~L~~Li~~S~GDIRqaLN~LQf~ 148 (555)
++.+++ |..++|..|.... +...+..+.... ++....+.+..++.... ++|.+++.|+..
T Consensus 123 l~TI~SRC~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ld~~ 190 (198)
T d2gnoa2 123 LPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLS-GLMESLKVLETE 190 (198)
T ss_dssp CHHHHTTSEEEECCCCHHHHHHHHHHHTTHHHHCGGGGTCHHHHHHHHHHHHHHHH-HHHHHHHHSCHH
T ss_pred HHHHhcceEEEeCCCchHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence 888887 6889998765321 222222222221 12222334444444444 478877766543
No 13
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=97.85 E-value=3.5e-05 Score=71.60 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=73.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHH---HHHHHHcCCcEEEEecCCCC----CCcCccce----eEEEecCCCHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGI---QQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL---~~liekSKrPIILtCND~n~----~L~~l~~~----l~I~FkrPs~~eI~srL 111 (555)
...+++|||+|.+... +....+| ...+...+.|||++++..-. .+++++++ ..+... |+.++....|
T Consensus 97 ~~dll~iDDi~~i~~~-~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL 174 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGK-ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKII 174 (213)
T ss_dssp TCSEEEEECGGGGTTC-HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHH
T ss_pred hccchhhhhhhhhcCc-hHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHH
Confidence 3579999999998753 2222233 33333467799999998632 23445443 567775 7778889999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHH---HHHHHHHH
Q 008751 112 QMICAAEKVELQQHLLVQLIESCRADIR---KTIMHLQF 147 (555)
Q Consensus 112 ~~Ic~kEgl~Id~~~L~~Li~~S~GDIR---qaLN~LQf 147 (555)
+..|...|+.+++++++.|++.. +|+| .+|+.|++
T Consensus 175 ~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l~l 212 (213)
T d1l8qa2 175 KEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKL 212 (213)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHHhhc
Confidence 99999999999999999999988 4566 56666553
No 14
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=97.60 E-value=2.9e-05 Score=73.89 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=87.9
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccc---cCCCCCCcEEEEeCCCCCCcc-----------cHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMG---KSDNHVKPLILIEDVDVFFPE-----------DRGFIAGIQQ 68 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~g---sl~~~kkkLILiDEVD~Lf~e-----------DrGf~sAL~~ 68 (555)
...++|+++|+.++++++++-.++ ...... ......+.+|+|||+|.++.. .++.++++..
T Consensus 58 la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~ 137 (247)
T d1ixza_ 58 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 137 (247)
T ss_dssp HHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHH
Confidence 456899999999999999884321 000010 012235679999999977532 1223445555
Q ss_pred HHHH--cCCc--EEEEecCCCCCCcCcc--ce--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----
Q 008751 69 IAEK--AKGP--VILTSNSNNITLPDSL--DR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA---- 136 (555)
Q Consensus 69 liek--SKrP--IILtCND~n~~L~~l~--~~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G---- 136 (555)
.+.. .+.+ ||.+||++...=+.++ .+ ..|.|.+|+.++-...|+..+...++. .+..++.|++.+.|
T Consensus 138 ~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~ 216 (247)
T d1ixza_ 138 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGA 216 (247)
T ss_dssp HHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHH
T ss_pred HhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHHHHCCCCCHH
Confidence 5543 2223 5567888653223343 24 589999999999888888776554433 33347788887765
Q ss_pred cHHHHHHHHHHHh
Q 008751 137 DIRKTIMHLQFWC 149 (555)
Q Consensus 137 DIRqaLN~LQf~s 149 (555)
||+..++.-...+
T Consensus 217 di~~lv~~A~l~a 229 (247)
T d1ixza_ 217 DLENLLNEAALLA 229 (247)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999887644333
No 15
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=97.37 E-value=4.9e-05 Score=69.23 Aligned_cols=107 Identities=10% Similarity=0.202 Sum_probs=77.7
Q ss_pred CCcEEEEeCCCCCCccc---HHHHHHHHHHHHH-------cCCcEEEEecCCCC------CCcCccc--eeEEEecCCCH
Q 008751 43 VKPLILIEDVDVFFPED---RGFIAGIQQIAEK-------AKGPVILTSNSNNI------TLPDSLD--RLEVSFTMPMP 104 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eD---rGf~sAL~~liek-------SKrPIILtCND~n~------~L~~l~~--~l~I~FkrPs~ 104 (555)
...++++||+|.+...+ ......+..+.+. .+.++|+++|+... ..+.... ...+.|.+++.
T Consensus 132 ~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~ 211 (287)
T d1w5sa2 132 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 211 (287)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CccccceeEEEEeccccccchhHHHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcH
Confidence 45688999999886532 2233444444442 46789999988641 1122223 36899999999
Q ss_pred HHHHHHHHHHHHHcCC--CCCHHHHHHHHHHc------CCcHHHHHHHHHHHh
Q 008751 105 KDLLSHLQMICAAEKV--ELQQHLLVQLIESC------RADIRKTIMHLQFWC 149 (555)
Q Consensus 105 ~eI~srL~~Ic~kEgl--~Id~~~L~~Li~~S------~GDIRqaLN~LQf~s 149 (555)
.++...|...+...+. .++++.|+.|+..+ .||+|++++.|+...
T Consensus 212 ~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~ 264 (287)
T d1w5sa2 212 RELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMAC 264 (287)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 9999999999876543 58999999998865 799999999998643
No 16
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.05 E-value=0.00018 Score=68.10 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=87.4
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCCcccH--------HHHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPEDR--------GFIAGIQQIAE 71 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~gsl---~~~kkkLILiDEVD~Lf~eDr--------Gf~sAL~~lie 71 (555)
...++|+++|..++++++++-... .......+ ...++.+|+|||+|.++.... .....+...+.
T Consensus 54 l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~ 133 (258)
T d1e32a2 54 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 133 (258)
T ss_dssp HHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccc
Confidence 456899999999999999874321 00000000 123678999999999986311 12223333333
Q ss_pred H----cCCcEEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHH
Q 008751 72 K----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DIR 139 (555)
Q Consensus 72 k----SKrPIILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G----DIR 139 (555)
. .++-||.|||.+...-+.++. + ..|.|..|+.++-...|.....+..+. ++..+..|+..+.| ||+
T Consensus 134 ~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~adl~ 212 (258)
T d1e32a2 134 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLA 212 (258)
T ss_dssp TCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHCTTCCHHHHH
T ss_pred cccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcccCCCHHHHH
Confidence 2 234567788887643334443 3 689999999999888888776544332 22247888888766 999
Q ss_pred HHHHHH
Q 008751 140 KTIMHL 145 (555)
Q Consensus 140 qaLN~L 145 (555)
..++.-
T Consensus 213 ~lv~~A 218 (258)
T d1e32a2 213 ALCSEA 218 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 17
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=96.89 E-value=0.00074 Score=64.38 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=83.1
Q ss_pred chhHHHhhCCCceEEEeCCCcccc-----cccccc---cCCCCCCcEEEEeCCCCCCcc--------cHHH---HHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMG---KSDNHVKPLILIEDVDVFFPE--------DRGF---IAGIQQ 68 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~r-----n~~v~g---sl~~~kkkLILiDEVD~Lf~e--------DrGf---~sAL~~ 68 (555)
...++|+++|..++++++++-.++ ...... ......+.+|+|||+|.++.. .... ++.+..
T Consensus 61 la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~ 140 (256)
T d1lv7a_ 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV 140 (256)
T ss_dssp HHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHH
Confidence 356899999999999999884432 000000 001235679999999987542 1112 233333
Q ss_pred HHHH--cCCc--EEEEecCCCCCCcCccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCC
Q 008751 69 IAEK--AKGP--VILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----CRA 136 (555)
Q Consensus 69 liek--SKrP--IILtCND~n~~L~~l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~----S~G 136 (555)
.+.. .+.+ ||.|+|++...-+.++. + ..|.|..|+.++-...++....+.++. .+..+..|++. +.+
T Consensus 141 ~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~a 219 (256)
T d1lv7a_ 141 EMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGA 219 (256)
T ss_dssp HHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHH
T ss_pred HhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHHHHHhCCCCCHH
Confidence 3431 2223 55567776643233442 4 589999999988888887776555443 23446677775 456
Q ss_pred cHHHHHHHH
Q 008751 137 DIRKTIMHL 145 (555)
Q Consensus 137 DIRqaLN~L 145 (555)
||+..++.-
T Consensus 220 di~~l~~~A 228 (256)
T d1lv7a_ 220 DLANLVNEA 228 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 898888753
No 18
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=96.79 E-value=0.0018 Score=58.15 Aligned_cols=107 Identities=13% Similarity=0.115 Sum_probs=74.6
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHH---HHcCCcEEEEecCCC---CCCcCccce---eEEEecCCCHHHHHHHHHH
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIA---EKAKGPVILTSNSNN---ITLPDSLDR---LEVSFTMPMPKDLLSHLQM 113 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~li---ekSKrPIILtCND~n---~~L~~l~~~---l~I~FkrPs~~eI~srL~~ 113 (555)
...++++|++|.+..........+.... ...+..+|.++|+.. ...+++.++ ..|+|.+++.+++..+|..
T Consensus 124 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~ 203 (276)
T d1fnna2 124 LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLD 203 (276)
T ss_dssp CCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHH
T ss_pred cccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHH
Confidence 4678899999998775333333332222 224567888888753 222223332 5799999999999999988
Q ss_pred HHHHc--CCCCCHHHHHHHHHH---------cCCcHHHHHHHHHHHh
Q 008751 114 ICAAE--KVELQQHLLVQLIES---------CRADIRKTIMHLQFWC 149 (555)
Q Consensus 114 Ic~kE--gl~Id~~~L~~Li~~---------S~GDIRqaLN~LQf~s 149 (555)
.+... +..++++.++.|+.. +.||+|++++.|+...
T Consensus 204 r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~ 250 (276)
T d1fnna2 204 RAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 250 (276)
T ss_dssp HHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHH
Confidence 77653 345899999999875 4799999999998643
No 19
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.31 E-value=0.00071 Score=64.35 Aligned_cols=137 Identities=15% Similarity=0.063 Sum_probs=77.5
Q ss_pred chhHHHhhCCCceEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCCcc-------cHH-HHHHHHHHH-
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPE-------DRG-FIAGIQQIA- 70 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~rn-----~~v~gsl---~~~kkkLILiDEVD~Lf~e-------DrG-f~sAL~~li- 70 (555)
...++|+++|..++.+++++-.+.. ......+ ....+.+|+|||+|.++.. ..+ ..+.+..++
T Consensus 57 l~~ala~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~ 136 (265)
T d1r7ra3 57 LAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 136 (265)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHTSCTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEEEHHHhhhccccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHH
Confidence 4558999999999999997733210 0000000 1235689999999988752 111 111223333
Q ss_pred ------HHcCCcEEEEecCCCCCCcC-ccc--e--eEEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHH----Hc
Q 008751 71 ------EKAKGPVILTSNSNNITLPD-SLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQ-HLLVQLIE----SC 134 (555)
Q Consensus 71 ------ekSKrPIILtCND~n~~L~~-l~~--~--l~I~FkrPs~~eI~srL~~Ic~kEgl~Id~-~~L~~Li~----~S 134 (555)
.+.++-||.|+|.+.. +++ ++. + ..|.|..|+..+-...|+..+. ++.+.. ..++.|+. ++
T Consensus 137 ~l~~~~~~~~v~vi~ttn~~~~-ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~--~~~~~~~~~l~~la~~t~g~s 213 (265)
T d1r7ra3 137 EMDGMSTKKNVFIIGATNRPDI-IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR--KSPVAKDVDLEFLAKMTNGFS 213 (265)
T ss_dssp TCC------CCEEEECCBSCTT-TSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTT--CC----CCCCHHHHHHHCSSC
T ss_pred HhhCcCCCCCEEEEEeCCCchh-CCHHHhCCCCccEEEEecchHHHHHHHHHHHHhc--cCCchhhhhHHHHHhcCCCCC
Confidence 3345567777788764 333 332 3 6799999999887777765443 222221 12344444 35
Q ss_pred CCcHHHHHHHHHH
Q 008751 135 RADIRKTIMHLQF 147 (555)
Q Consensus 135 ~GDIRqaLN~LQf 147 (555)
.+||...++.--.
T Consensus 214 ~~di~~lv~~A~~ 226 (265)
T d1r7ra3 214 GADLTEICQRACK 226 (265)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6788877655433
No 20
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=95.86 E-value=0.0018 Score=61.04 Aligned_cols=137 Identities=11% Similarity=0.184 Sum_probs=78.9
Q ss_pred hhHHHhhCCCceEEEeCCCcccc------cccccccC---CCCCCcEEEEeCCCCCCcc-------cHHHHHHHHHHHHH
Q 008751 9 LCEAAQHADDEVVEVIHIPDDEN------SHGVMGKS---DNHVKPLILIEDVDVFFPE-------DRGFIAGIQQIAEK 72 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~r------n~~v~gsl---~~~kkkLILiDEVD~Lf~e-------DrGf~sAL~~liek 72 (555)
..++|+++|+.++++++++.... .......+ ....+.+|+|||+|.+... ..-...++..++..
T Consensus 57 a~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~ 136 (246)
T d1d2na_ 57 AAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK 136 (246)
T ss_dssp HHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC
T ss_pred HHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcC
Confidence 45799999999999999874321 01111100 1234679999999987542 22234455555543
Q ss_pred cC---Cc--EEEEecCCCCCCc--Cccce--eEEEecCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-----c
Q 008751 73 AK---GP--VILTSNSNNITLP--DSLDR--LEVSFTMPM-PKDLLSHLQMICAAEKVELQQHLLVQLIESCRA-----D 137 (555)
Q Consensus 73 SK---rP--IILtCND~n~~L~--~l~~~--l~I~FkrPs-~~eI~srL~~Ic~kEgl~Id~~~L~~Li~~S~G-----D 137 (555)
.. .+ ||.|||.+.. +. .+..+ ..|.|..+. ..++...|... ..+++..+..+++...| +
T Consensus 137 ~~~~~~~v~vi~tTn~~~~-ld~~~~~~rF~~~i~~P~~~~r~~il~~l~~~-----~~~~~~~~~~i~~~~~g~~~~~~ 210 (246)
T d1d2na_ 137 APPQGRKLLIIGTTSRKDV-LQEMEMLNAFSTTIHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVKGKKVWIG 210 (246)
T ss_dssp CCSTTCEEEEEEEESCHHH-HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEEEEC
T ss_pred CCccccceeeeeccCChhh-ccchhhcCccceEEecCCchhHHHHHHHHHhc-----cCCChHHHHHHHHHcCCCccchh
Confidence 21 23 5567776531 11 12233 356663332 33455444332 24567778888887766 5
Q ss_pred HHHHHHHHHHHhhc
Q 008751 138 IRKTIMHLQFWCQN 151 (555)
Q Consensus 138 IRqaLN~LQf~s~s 151 (555)
+|++++.++...+.
T Consensus 211 ik~ll~~ie~a~~~ 224 (246)
T d1d2na_ 211 IKKLLMLIEMSLQM 224 (246)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988875543
No 21
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=91.40 E-value=0.6 Score=44.63 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=86.7
Q ss_pred chhHHHhhCCCceEEEeCCCcccccccc---cc----------------cCCCCCCcEEEEeCCCCCCcccHHHHHHHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDENSHGV---MG----------------KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQ 68 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~rn~~v---~g----------------sl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~ 68 (555)
....+|+.++..++-+|+|.-.+. +.+ .| .+....+.+|+|||+|-+.. ..+.++.+
T Consensus 68 lak~la~~l~~~~i~~d~s~~~~~-~~~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~---~V~~~lLq 143 (315)
T d1r6bx3 68 VTVQLSKALGIELLRFDMSEYMER-HTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---DVFNILLQ 143 (315)
T ss_dssp HHHHHHHHHTCEEEEEEGGGCSSS-SCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH---HHHHHHHH
T ss_pred HHHHHHhhccCCeeEeccccccch-hhhhhhcccCCCccccccCChhhHHHHhCccchhhhcccccccc---hHhhhhHH
Confidence 345789999999999999884321 100 01 11123568999999999865 48899999
Q ss_pred HHHH-------------cCCcEEEEecCCCCC-------------------------CcCccce--eEEEecCCCHHHHH
Q 008751 69 IAEK-------------AKGPVILTSNSNNIT-------------------------LPDSLDR--LEVSFTMPMPKDLL 108 (555)
Q Consensus 69 liek-------------SKrPIILtCND~n~~-------------------------L~~l~~~--l~I~FkrPs~~eI~ 108 (555)
++.. .++-||+|+|--... .|.++.+ ..+.|.+.+.+++.
T Consensus 144 ild~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~ 223 (315)
T d1r6bx3 144 VMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIH 223 (315)
T ss_dssp HHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHH
T ss_pred hhccceecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHH
Confidence 9985 245588888843211 1123344 47889988887776
Q ss_pred HHHHHH-------HHHcC--CCCCHHHHHHHHHHc------CCcHHHHHH
Q 008751 109 SHLQMI-------CAAEK--VELQQHLLVQLIESC------RADIRKTIM 143 (555)
Q Consensus 109 srL~~I-------c~kEg--l~Id~~~L~~Li~~S------~GDIRqaLN 143 (555)
..+... +...+ +.+++++++.|++.. .+.||++|.
T Consensus 224 ~I~~~~l~~~~~~l~~~~i~l~~~~~a~~~l~~~~yd~~~GaR~L~r~Ie 273 (315)
T d1r6bx3 224 QVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQ 273 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHhCCCCCCChhhHHHHHH
Confidence 544332 22233 357899999998852 368888883
No 22
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=89.74 E-value=0.35 Score=46.54 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=84.1
Q ss_pred hhHHHhhC---CCceEEEeCCCcccc---ccc---------------ccccCCCCCCcEEEEeCCCCCCcccHHHHHHHH
Q 008751 9 LCEAAQHA---DDEVVEVIHIPDDEN---SHG---------------VMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQ 67 (555)
Q Consensus 9 ~~~iAkel---Gy~VIELNASDdR~r---n~~---------------v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~ 67 (555)
...+|+.+ +..++.+|.++.-.. +.. ....+......+|+|||+|-+.. +.+..|.
T Consensus 70 ak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~---~v~~~ll 146 (315)
T d1qvra3 70 AKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP---DVFNILL 146 (315)
T ss_dssp HHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH---HHHHHHH
T ss_pred HHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCH---HHHHHHH
Confidence 34667766 678999999874321 000 00111123468999999999854 5788888
Q ss_pred HHHHHc-------------CCcEEEEecCC--------------------------CCCCcCccce--eEEEecCCCHHH
Q 008751 68 QIAEKA-------------KGPVILTSNSN--------------------------NITLPDSLDR--LEVSFTMPMPKD 106 (555)
Q Consensus 68 ~liekS-------------KrPIILtCND~--------------------------n~~L~~l~~~--l~I~FkrPs~~e 106 (555)
+++... ++=||+|+|-- ....|.++.+ ..+.|.+.+..+
T Consensus 147 ~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~ 226 (315)
T d1qvra3 147 QILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQ 226 (315)
T ss_dssp HHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHH
T ss_pred HHhccCceeCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhh
Confidence 888752 23377777731 1112223344 467899999887
Q ss_pred HHHHHHHHH-------HHcC--CCCCHHHHHHHHHH------cCCcHHHHHHH
Q 008751 107 LLSHLQMIC-------AAEK--VELQQHLLVQLIES------CRADIRKTIMH 144 (555)
Q Consensus 107 I~srL~~Ic-------~kEg--l~Id~~~L~~Li~~------S~GDIRqaLN~ 144 (555)
+...+.... ...+ +.+++++++.|++. -.+.||++|..
T Consensus 227 ~~~I~~~~l~~l~~rl~~~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~ 279 (315)
T d1qvra3 227 IRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQR 279 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 776654332 2233 36789999999986 23789988854
No 23
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=88.29 E-value=0.24 Score=41.55 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=38.4
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCC
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN 85 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n 85 (555)
.+..++++||++.....+++++.+|.++++....|||+++.+..
T Consensus 98 ~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~ 141 (178)
T d1ye8a1 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD 141 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSC
T ss_pred cCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHH
Confidence 46789999999887777899999999999988889999988754
No 24
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=87.48 E-value=0.21 Score=47.60 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=60.1
Q ss_pred chhHHHhhCCCceEEEeCCCcccccccccc-------cC---CC------CCCcEEEEeCCCCCCcc---------cHHH
Q 008751 8 SLCEAAQHADDEVVEVIHIPDDENSHGVMG-------KS---DN------HVKPLILIEDVDVFFPE---------DRGF 62 (555)
Q Consensus 8 ~~~~iAkelGy~VIELNASDdR~rn~~v~g-------sl---~~------~kkkLILiDEVD~Lf~e---------DrGf 62 (555)
..-++|++++..++.+|++.-... +.+.+ .. -+ .++.+|+|||+|.+... ++|-
T Consensus 65 lAkalA~~~~~~~~~i~~s~~~~~-~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv 143 (309)
T d1ofha_ 65 IARRLAKLANAPFIKVEATKFTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGV 143 (309)
T ss_dssp HHHHHHHHHTCCEEEEEGGGGSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHH
T ss_pred HHHHHhhccccchhcccccccccc-eeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHH
Confidence 345899999999999999883221 11100 00 00 13589999999998642 4556
Q ss_pred HHHHHHHHHH------------cCCcEEEEe----cCCCCCCcCccce--eEEEecCCCHHHHHHHH
Q 008751 63 IAGIQQIAEK------------AKGPVILTS----NSNNITLPDSLDR--LEVSFTMPMPKDLLSHL 111 (555)
Q Consensus 63 ~sAL~~liek------------SKrPIILtC----ND~n~~L~~l~~~--l~I~FkrPs~~eI~srL 111 (555)
+.+|.+++.- +++-+|++- +++....|.++.+ ..+.|..|+..+....|
T Consensus 144 ~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il 210 (309)
T d1ofha_ 144 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERIL 210 (309)
T ss_dssp HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred HHHhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHH
Confidence 6677777763 122233321 1212222223334 46889999987766654
No 25
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=83.14 E-value=1 Score=42.65 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=80.7
Q ss_pred CCCceEEEeCCCcccc----------cccccccCCCCCCcEEEEeCCCCCCcc--cHH----HHHHHHHHHHHcCCcEEE
Q 008751 16 ADDEVVEVIHIPDDEN----------SHGVMGKSDNHVKPLILIEDVDVFFPE--DRG----FIAGIQQIAEKAKGPVIL 79 (555)
Q Consensus 16 lGy~VIELNASDdR~r----------n~~v~gsl~~~kkkLILiDEVD~Lf~e--DrG----f~sAL~~liekSKrPIIL 79 (555)
.+..|++++.+.=... -..+...+...++-++++||++.++.. ..| ....|..++......+|.
T Consensus 73 ~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIg 152 (268)
T d1r6bx2 73 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIG 152 (268)
T ss_dssp TTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEE
T ss_pred ccceeEEeeechHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEE
Confidence 5788999998762211 011111122334457779999999752 112 233444566667788999
Q ss_pred EecCCC--CCCc---Cccce-eEEEecCCCHHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHcC------CcHHHHHH
Q 008751 80 TSNSNN--ITLP---DSLDR-LEVSFTMPMPKDLLSHLQMIC----AAEKVELQQHLLVQLIESCR------ADIRKTIM 143 (555)
Q Consensus 80 tCND~n--~~L~---~l~~~-l~I~FkrPs~~eI~srL~~Ic----~kEgl~Id~~~L~~Li~~S~------GDIRqaLN 143 (555)
+|+... ..+. .+..+ ..|++..|+.++....|+.+. ...++.++++.+..++..+. .=-.++|.
T Consensus 153 atT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAId 232 (268)
T d1r6bx2 153 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 232 (268)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHH
T ss_pred eCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHHH
Confidence 887752 2222 22334 579999999998888887654 56789999999988876532 22345565
Q ss_pred HHHH
Q 008751 144 HLQF 147 (555)
Q Consensus 144 ~LQf 147 (555)
.|.-
T Consensus 233 llDe 236 (268)
T d1r6bx2 233 VIDE 236 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 26
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=82.32 E-value=0.11 Score=43.23 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhhhhhhhcccchhhccccCCCCCCCCCCcCCCCCCcchHHHHH
Q 008751 190 LSELVVKEIMKSLSLMEENSTLRELSEGEGHDEMPSNQDMHNNPADSVEAKKE 242 (555)
Q Consensus 190 L~el~l~Ei~~si~~~ee~~~~le~~e~l~~~~~~n~l~~~~~~~d~~~~~k~ 242 (555)
+||.++.+|++.|...|.+.+++++|+. .++|..||+|++-|-+...
T Consensus 3 dWe~~i~~ia~~I~~eqsp~~L~~iR~~------lYeLL~~cIpp~~Ilk~L~ 49 (99)
T d1sxje1 3 DWIIVIHKLTRKIVKERSVNSLIECRAV------LYDLLAHCIPANIILKELT 49 (99)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHH------HHHHHTTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHhcCCHHHHHHHHH
Confidence 6999999999999999999999999977 7899999999999965553
No 27
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=82.20 E-value=2.8 Score=38.42 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc-------------CCcEEEEecCCC------CCC-cCccce---eEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDR---LEVSF 99 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS-------------KrPIILtCND~n------~~L-~~l~~~---l~I~F 99 (555)
+...++|||||.|... .+..|.++++.. .++||++++..- ..+ ++++.+ ..|.+
T Consensus 94 ~gGtL~l~~i~~L~~~---~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~l 170 (247)
T d1ny5a2 94 DGGTLFLDEIGELSLE---AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEI 170 (247)
T ss_dssp TTSEEEEESGGGCCHH---HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEEC
T ss_pred CCCEEEEeChHhCCHH---HHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecC
Confidence 3468999999999765 356667777642 346888887531 111 122222 34444
Q ss_pred cCCC--HHHH----HHHHHHHHHHcCCC---CCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 008751 100 TMPM--PKDL----LSHLQMICAAEKVE---LQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (555)
Q Consensus 100 krPs--~~eI----~srL~~Ic~kEgl~---Id~~~L~~Li~~S-~GDIRqaLN~LQf~s~s 151 (555)
.+.. .++| ..+|..+|.+-|.. +++++++.|..+. -|+||+.-+.++.....
T Consensus 171 PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~ 232 (247)
T d1ny5a2 171 PPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 232 (247)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred CChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 3322 2344 56666777776654 6899999998876 89999999988865543
No 28
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=77.81 E-value=1.2 Score=35.07 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=26.8
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEe
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTS 81 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtC 81 (555)
.+.++||+||++.+...-.+.++.+..+.....+++|+.+
T Consensus 97 ~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lT 136 (140)
T d1yksa1 97 VNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMT 136 (140)
T ss_dssp CCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred cceeEEEEccccccChhhHHHHHHHHHHhhCCCCCEEEEE
Confidence 3578999999998865433444555555555666777654
No 29
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=62.37 E-value=8.5 Score=37.72 Aligned_cols=135 Identities=11% Similarity=0.088 Sum_probs=78.6
Q ss_pred CCCceEEEeCCCccc------c----cccccccCCCCC-CcEEEEeCCCCCCcc--cHHH---HHHHHHHHHHcCCcEEE
Q 008751 16 ADDEVVEVIHIPDDE------N----SHGVMGKSDNHV-KPLILIEDVDVFFPE--DRGF---IAGIQQIAEKAKGPVIL 79 (555)
Q Consensus 16 lGy~VIELNASDdR~------r----n~~v~gsl~~~k-kkLILiDEVD~Lf~e--DrGf---~sAL~~liekSKrPIIL 79 (555)
.|..|++++.+.=.. . -..+...+...+ +-+++|||++.+++. ..|. ...|..++......+|.
T Consensus 77 ~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~ 156 (387)
T d1qvra2 77 KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIG 156 (387)
T ss_dssp TTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEE
T ss_pred cCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceee
Confidence 467899998866221 1 011111111222 346899999999762 2222 34577788888889999
Q ss_pred EecCCC-CCC---cCccce-eEEEecCCCHHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHc------CCcHHHHHHH
Q 008751 80 TSNSNN-ITL---PDSLDR-LEVSFTMPMPKDLLSHLQMIC----AAEKVELQQHLLVQLIESC------RADIRKTIMH 144 (555)
Q Consensus 80 tCND~n-~~L---~~l~~~-l~I~FkrPs~~eI~srL~~Ic----~kEgl~Id~~~L~~Li~~S------~GDIRqaLN~ 144 (555)
+|+... ..+ +.+..+ ..|.+..|+..+....|+.+. ...|+.++++.|...+..+ ..=-.+||..
T Consensus 157 ~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidl 236 (387)
T d1qvra2 157 ATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDL 236 (387)
T ss_dssp EECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHH
T ss_pred ecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHHH
Confidence 997641 101 112234 579999999999888888765 4558999999999988763 3445688888
Q ss_pred HHHHhh
Q 008751 145 LQFWCQ 150 (555)
Q Consensus 145 LQf~s~ 150 (555)
|...+.
T Consensus 237 ld~a~a 242 (387)
T d1qvra2 237 IDEAAA 242 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 30
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=59.92 E-value=4.4 Score=32.73 Aligned_cols=97 Identities=9% Similarity=0.048 Sum_probs=56.2
Q ss_pred hHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCCCCC-
Q 008751 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITL- 88 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n~~L- 88 (555)
+...+..||+|.+.+-+.+-- .. +...++.+||+| +. |.+ - +|...++.+-+....|||+++...+...
T Consensus 19 ~~~L~~~g~~v~~a~~~~~al-~~-----l~~~~~dlii~D-~~-mp~-~-~G~~~~~~~r~~~~~pii~lt~~~~~~~~ 88 (121)
T d1xhfa1 19 KSIFEAEGYDVFEATDGAEMH-QI-----LSEYDINLVIMD-IN-LPG-K-NGLLLARELREQANVALMFLTGRDNEVDK 88 (121)
T ss_dssp HHHHHTTTCEEEEESSHHHHH-HH-----HHHSCCSEEEEC-SS-CSS-S-CHHHHHHHHHHHCCCEEEEEESCCSHHHH
T ss_pred HHHHHHCCCEEEEECChHHHH-HH-----HHhcCCCEEEee-cc-cCC-c-cCcHHHHHHHhcCCCcEEEEECCCCHHHH
Confidence 455667899888765432110 01 112357899997 22 222 2 2345566666667899999887654211
Q ss_pred cCccc--eeEEEecCCCHHHHHHHHHHHHH
Q 008751 89 PDSLD--RLEVSFTMPMPKDLLSHLQMICA 116 (555)
Q Consensus 89 ~~l~~--~l~I~FkrPs~~eI~srL~~Ic~ 116 (555)
...++ ...+-.++.+..++..+++.+..
T Consensus 89 ~~a~~~Ga~dyl~KP~~~~~L~~~v~~~l~ 118 (121)
T d1xhfa1 89 ILGLEIGADDYITKPFNPRELTIRARNLLS 118 (121)
T ss_dssp HHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 11112 23455566688999999888764
No 31
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.79 E-value=1.4 Score=39.19 Aligned_cols=37 Identities=16% Similarity=0.376 Sum_probs=27.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTS 81 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtC 81 (555)
.=+.+++||||.|++ .||...+..+++.. ++.+||.+
T Consensus 146 ~l~~lVlDEaD~ll~--~~f~~~i~~I~~~~~~~~Q~~l~S 184 (206)
T d1veca_ 146 HVQMIVLDEADKLLS--QDFVQIMEDIILTLPKNRQILLYS 184 (206)
T ss_dssp TCCEEEEETHHHHTS--TTTHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccceEEEeccccccc--cchHHHHHHHHHhCCCCCEEEEEE
Confidence 347999999999985 46888888888774 34555554
No 32
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=58.91 E-value=15 Score=31.30 Aligned_cols=100 Identities=5% Similarity=0.028 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCCCCcc-cHHHHHHHHHHHHH-cCCcEEEEecCCC--------CCCc-Cccc--eeEEEecCCCHHHHHH
Q 008751 43 VKPLILIEDVDVFFPE-DRGFIAGIQQIAEK-AKGPVILTSNSNN--------ITLP-DSLD--RLEVSFTMPMPKDLLS 109 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e-DrGf~sAL~~liek-SKrPIILtCND~n--------~~L~-~l~~--~l~I~FkrPs~~eI~s 109 (555)
++.+|++||+|.+.+. ...+...+...+.. .+..+|++..... .... ..+. ...+...+.+.+++..
T Consensus 136 ~~~~i~id~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~ 215 (283)
T d2fnaa2 136 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 215 (283)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred cccccccchhhhhcccchHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHH
Confidence 5568999999987663 44466677666554 3455666654421 0011 1112 2568888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 110 HLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 110 rL~~Ic~kEgl~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
.|...+...|+..+ .++.+++.++|-.+ .|..+
T Consensus 216 ~l~~~~~~~~~~~~--~~~~i~~~~~G~P~-~L~~~ 248 (283)
T d2fnaa2 216 FLRRGFQEADIDFK--DYEVVYEKIGGIPG-WLTYF 248 (283)
T ss_dssp HHHHHHHHHTCCCC--CHHHHHHHHCSCHH-HHHHH
T ss_pred HHHhhhhhcCCCHH--HHHHHHHHhCCCHH-HHHHH
Confidence 99999988887655 47889999998875 34433
No 33
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=58.49 E-value=2.7 Score=33.87 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=57.5
Q ss_pred hhHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCCCC-
Q 008751 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNIT- 87 (555)
Q Consensus 9 ~~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n~~- 87 (555)
.+.+-++.||+|.+.+-+.+-- .. +....+.+||+|= .|.+.+ |+..+.++-+....|||+++......
T Consensus 16 l~~~L~~~g~~v~~a~~~~eal-~~-----~~~~~~dlillD~--~mp~~~--G~~~~~~i~~~~~~pvI~lt~~~~~~~ 85 (117)
T d2a9pa1 16 IKFNMTKEGYEVVTAFNGREAL-EQ-----FEAEQPDIIILDL--MLPEID--GLEVAKTIRKTSSVPILMLSAKDSEFD 85 (117)
T ss_dssp HHHHHHHTTCEEEEESSHHHHH-HH-----HHHHCCSEEEECS--SCSSSC--HHHHHHHHHTTCCCCEEEEESCCSHHH
T ss_pred HHHHHHHCCCEEEEECCHHHHH-HH-----HHhcCCCEEEecc--ccCCCC--ccHHHHHHHhCCCCCEEEEecCCCHHH
Confidence 3455667899988654322110 01 1123578999983 233322 46677777666778999988775421
Q ss_pred CcCccc--eeEEEecCCCHHHHHHHHHHHHH
Q 008751 88 LPDSLD--RLEVSFTMPMPKDLLSHLQMICA 116 (555)
Q Consensus 88 L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~ 116 (555)
....+. ...+-.++.+..++..+++.+.+
T Consensus 86 ~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lr 116 (117)
T d2a9pa1 86 KVIGLELGADDYVTKPFSNRELQARVKALLR 116 (117)
T ss_dssp HHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHHHHhC
Confidence 111122 24555566688999999887764
No 34
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=51.78 E-value=9.6 Score=30.44 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=53.0
Q ss_pred hHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCcEEEEecCCCC
Q 008751 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNI 86 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrPIILtCND~n~ 86 (555)
..+-+..||+|.+. ++..+ . ...+....+.+||+|-. |.+.| |...+.++-+ ....|||+++...+.
T Consensus 17 ~~~L~~~g~~v~~a--~~~~~--a--l~~l~~~~~dlil~D~~--mp~~~--G~~l~~~lr~~~~~~~~pvi~lt~~~~~ 86 (121)
T d1zesa1 17 CFVLEQNGFQPVEA--EDYDS--A--VNQLNEPWPDLILLDWM--LPGGS--GIQFIKHLKRESMTRDIPVVMLTARGEE 86 (121)
T ss_dssp HHHHHHTTCEEEEE--CSHHH--H--HHHSSSSCCSEEEECSS--CTTSC--HHHHHHHHHHSTTTTTSCEEEEESCCSH
T ss_pred HHHHHHCCCEEEEE--CChHH--H--HHHHHccCCCEEEeecC--CCCCC--HHHHHHHHHhCccCCCCeEEEEECCCCH
Confidence 34556679988764 33221 0 01112236789999843 22212 3333333332 346899998876542
Q ss_pred C-CcCccc--eeEEEecCCCHHHHHHHHHHHHH
Q 008751 87 T-LPDSLD--RLEVSFTMPMPKDLLSHLQMICA 116 (555)
Q Consensus 87 ~-L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~ 116 (555)
. ..+.+. ...+-.++.+..++..+++.+.+
T Consensus 87 ~~~~~~~~~G~~d~l~KP~~~~~L~~~v~~~lr 119 (121)
T d1zesa1 87 EDRVRGLETGADDYITKPFSPKELVARIKAVMR 119 (121)
T ss_dssp HHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 1 111122 24555666688999999987764
No 35
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=51.62 E-value=25 Score=27.98 Aligned_cols=100 Identities=9% Similarity=0.061 Sum_probs=56.5
Q ss_pred hHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-cCCcEEEEecCCCC-C
Q 008751 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNI-T 87 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-SKrPIILtCND~n~-~ 87 (555)
...-+..||+|....-..+-- . .+...++.+||+|-. |.+.| ++..+.++-+. ...|||+++...+. .
T Consensus 18 ~~~L~~~g~~v~~a~~~~eal--~----~~~~~~~dlvl~D~~--mP~~~--G~el~~~ir~~~~~~piI~lt~~~~~~~ 87 (121)
T d1ys7a2 18 ERGLRLSGFEVATAVDGAEAL--R----SATENRPDAIVLDIN--MPVLD--GVSVVTALRAMDNDVPVCVLSARSSVDD 87 (121)
T ss_dssp HHHHHHTTCEEEEESSHHHHH--H----HHHHSCCSEEEEESS--CSSSC--HHHHHHHHHHTTCCCCEEEEECCCTTTC
T ss_pred HHHHHHCCCEEEEECCHHHHH--H----HHHhCCCCEEEEEee--ccCcc--cHHHHHHHHhcCCCCEEEEEEeeCCHHH
Confidence 345567799888754332110 0 111235789999842 22211 34444444333 46899988866542 2
Q ss_pred CcCccc--eeEEEecCCCHHHHHHHHHHHHHHcC
Q 008751 88 LPDSLD--RLEVSFTMPMPKDLLSHLQMICAAEK 119 (555)
Q Consensus 88 L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kEg 119 (555)
..+.++ ...+--++.+..++..+++.+.++.|
T Consensus 88 ~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~rrG 121 (121)
T d1ys7a2 88 RVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 121 (121)
T ss_dssp CCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 222233 24555566788999999998887654
No 36
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=49.66 E-value=8.4 Score=30.72 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=13.1
Q ss_pred CCcEEEEeCCCCCCcc
Q 008751 43 VKPLILIEDVDVFFPE 58 (555)
Q Consensus 43 kkkLILiDEVD~Lf~e 58 (555)
+.++||+||++.+...
T Consensus 94 ~~~~vIiDE~H~~~~~ 109 (136)
T d1a1va1 94 AYDIIICDECHSTDAT 109 (136)
T ss_dssp CCSEEEEETTTCCSHH
T ss_pred cCCEEEEecccccCHH
Confidence 5689999999987553
No 37
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.07 E-value=3.6 Score=35.99 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=26.8
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC--CcEEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK--GPVILTS 81 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK--rPIILtC 81 (555)
.=+.+++||||.|++ .||...+..+++..+ +-+|+.+
T Consensus 143 ~l~~lV~DEaD~l~~--~~f~~~v~~I~~~l~~~~Q~il~S 181 (206)
T d1s2ma1 143 DCSLFIMDEADKMLS--RDFKTIIEQILSFLPPTHQSLLFS 181 (206)
T ss_dssp TCCEEEEESHHHHSS--HHHHHHHHHHHTTSCSSCEEEEEE
T ss_pred cceEEEeechhhhhh--hhhHHHHHHHHHhCCCCCEEEEEE
Confidence 346899999999985 488999999887542 3344443
No 38
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.02 E-value=19 Score=27.67 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcCCcH-HHHHHHHHHHhhcCC
Q 008751 101 MPMPKDLLSHLQMICAAE---------KVELQQHLLVQLIESCRADI-RKTIMHLQFWCQNKG 153 (555)
Q Consensus 101 rPs~~eI~srL~~Ic~kE---------gl~Id~~~L~~Li~~S~GDI-RqaLN~LQf~s~s~~ 153 (555)
+|....+......|+..- .+.+++..|+.|...+.+|+ .++..+|+.|....+
T Consensus 3 ~p~~~~l~~~f~~ia~~lg~~Wk~Lar~Lgls~~~I~~I~~~~~~~~~e~~~~mL~~W~~~~g 65 (95)
T d1fada_ 3 PPGEAYLQVAFDIVCDNVGRDWKRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEK 65 (95)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHG
T ss_pred CccHhhHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 455556666666665433 35788999999999888998 688899999987644
No 39
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=44.13 E-value=16 Score=35.16 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=39.1
Q ss_pred hHHHhhCCCceEEEeCCCcccc-------ccccc-------ccCCCCCCcEEEEeCCCCCCc-----------ccHHHHH
Q 008751 10 CEAAQHADDEVVEVIHIPDDEN-------SHGVM-------GKSDNHVKPLILIEDVDVFFP-----------EDRGFIA 64 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~r-------n~~v~-------gsl~~~kkkLILiDEVD~Lf~-----------eDrGf~s 64 (555)
-++|+.++..++-++|+.-.+. .+.+. +......+.++++||+|.... ...|-+.
T Consensus 86 k~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~ 165 (364)
T d1um8a_ 86 QTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQ 165 (364)
T ss_dssp HHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHH
T ss_pred HHHHhhcccceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHH
Confidence 4688888999999999873321 01110 111112468999999998643 2456788
Q ss_pred HHHHHHH
Q 008751 65 GIQQIAE 71 (555)
Q Consensus 65 AL~~lie 71 (555)
++.++++
T Consensus 166 ~lLqild 172 (364)
T d1um8a_ 166 ALLKIVE 172 (364)
T ss_dssp HHHHHHH
T ss_pred hhhhhhc
Confidence 8999998
No 40
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=43.94 E-value=12 Score=33.17 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=27.4
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND 83 (555)
.-++||+||+|.+...-..+.+.+..+......++|+.+-.
T Consensus 100 ~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~~~~~v~~SAT 140 (305)
T d2bmfa2 100 NYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTAT 140 (305)
T ss_dssp CCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSS
T ss_pred ceeEEEeeeeeecchhhHHHHHHHHHhhccccceEEEeecC
Confidence 46799999999887643345555566666666666665543
No 41
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}
Probab=42.03 E-value=15 Score=33.44 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=51.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCCCCCcCccc-eeEEEecCCCHHHHHHHHHHHHHHcCC-
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLD-RLEVSFTMPMPKDLLSHLQMICAAEKV- 120 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n~~L~~l~~-~l~I~FkrPs~~eI~srL~~Ic~kEgl- 120 (555)
++-+||+|+|+.. ..+.. + ...+..||+|+.+.+. ...... ...+..+..+.++...-+...+.....
T Consensus 135 kr~LlVLDDv~~~-----~~~~~---~-~~~~srilvTTR~~~v-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 204 (277)
T d2a5yb3 135 PNTLFVFDDVVQE-----ETIRW---A-QELRLRCLVTTRDVEI-SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG 204 (277)
T ss_dssp TTEEEEEEEECCH-----HHHHH---H-HHTTCEEEEEESBGGG-GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--
T ss_pred CCeeEecchhhHH-----hhhhh---h-cccCceEEEEeehHHH-HHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCc
Confidence 5679999999742 12222 2 2335569999988652 111222 356778888988887777554332221
Q ss_pred CCCHHHHHHHHHHcCCcH
Q 008751 121 ELQQHLLVQLIESCRADI 138 (555)
Q Consensus 121 ~Id~~~L~~Li~~S~GDI 138 (555)
.-.++..++|++.|+|--
T Consensus 205 ~~~~~~~~~iv~~c~GlP 222 (277)
T d2a5yb3 205 EKEEDVLNKTIELSSGNP 222 (277)
T ss_dssp CHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHHHHhCCCH
Confidence 112456788888888754
No 42
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=39.57 E-value=13 Score=34.41 Aligned_cols=26 Identities=8% Similarity=0.308 Sum_probs=22.0
Q ss_pred CcEEEEeCCCCCCcccHHHHHHHHHHHHH
Q 008751 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (555)
Q Consensus 44 kkLILiDEVD~Lf~eDrGf~sAL~~liek 72 (555)
..++++||++.+... .+++|.+.|+.
T Consensus 128 ~gvl~iDEi~~~~~~---~~~aLl~~me~ 153 (333)
T d1g8pa_ 128 RGYLYIDECNLLEDH---IVDLLLDVAQS 153 (333)
T ss_dssp TEEEEETTGGGSCHH---HHHHHHHHHHH
T ss_pred ccEeecccHHHHHHH---HHHHHhhhhcC
Confidence 479999999999654 67899999986
No 43
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.88 E-value=7.4 Score=34.11 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=29.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~ 84 (555)
.=+.+++||||.|++ +.||...+..+++.. ++-+||.+-..
T Consensus 145 ~l~~lVlDEaD~ll~-~~~~~~~i~~I~~~~~~~~Q~il~SAT~ 187 (207)
T d1t6na_ 145 HIKHFILDECDKMLE-QLDMRRDVQEIFRMTPHEKQVMMFSATL 187 (207)
T ss_dssp TCCEEEEESHHHHHS-SHHHHHHHHHHHHTSCSSSEEEEEESCC
T ss_pred ccceeehhhhhhhhh-cCCcHHHHHHHHHhCCCCCEEEEEeeeC
Confidence 346999999999985 457888888888763 33466654443
No 44
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.87 E-value=35 Score=26.40 Aligned_cols=54 Identities=13% Similarity=0.322 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHcCCcH-HHHHHHHHHHhhcCCC
Q 008751 101 MPMPKDLLSHLQMICAAEK---------VELQQHLLVQLIESCRADI-RKTIMHLQFWCQNKGY 154 (555)
Q Consensus 101 rPs~~eI~srL~~Ic~kEg---------l~Id~~~L~~Li~~S~GDI-RqaLN~LQf~s~s~~~ 154 (555)
.|...++..++..|+..-| +.+++..|+.|-..+.+|+ .++..+|+.|....+.
T Consensus 3 ~~~~~dl~~~f~~ia~~lg~~W~~La~~Lgl~~~~I~~I~~~~~~~~~e~~~~mL~~W~~~~g~ 66 (103)
T d2gf5a1 3 APGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKE 66 (103)
T ss_dssp STTHHHHHHHHHHHHHSCCTTHHHHHHHTTCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTT
T ss_pred CcchhhHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 3667777777777776544 5788999999988888886 5888999999976543
No 45
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.65 E-value=3.9 Score=36.85 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=28.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~ 84 (555)
.=+.+++||||.|++ .||...+..+++.. ++-+||.+-..
T Consensus 159 ~l~~lVlDEaD~ll~--~~f~~~i~~I~~~l~~~~Q~ilfSAT~ 200 (222)
T d2j0sa1 159 AIKMLVLDEADEMLN--KGFKEQIYDVYRYLPPATQVVLISATL 200 (222)
T ss_dssp TCCEEEEETHHHHTS--TTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred cceeeeecchhHhhh--cCcHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 347999999999985 57888888888763 23456655443
No 46
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.49 E-value=4.3 Score=36.25 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=29.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND~ 84 (555)
.-+.+++||||.|++ .||...+.++++.. ++.+||.+...
T Consensus 155 ~l~~lVlDEaD~ll~--~~f~~~~~~Il~~~~~~~Q~il~SAT~ 196 (218)
T d2g9na1 155 YIKMFVLDEADEMLS--RGFKDQIYDIFQKLNSNTQVVLLSATM 196 (218)
T ss_dssp TCCEEEEESHHHHHH--TTCHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred cceEEEeeecchhhc--CchHHHHHHHHHhCCCCCeEEEEEecC
Confidence 457999999999985 46788888888764 35577766554
No 47
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=37.25 E-value=10 Score=30.15 Aligned_cols=97 Identities=9% Similarity=-0.063 Sum_probs=49.5
Q ss_pred hHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCcEEEEecCCCC
Q 008751 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNI 86 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrPIILtCND~n~ 86 (555)
+.+-...||+|.+. ++..+--... ...++.+||+|=- |.+.| |+..+.++-+ ....|||+++.....
T Consensus 18 ~~~L~~~g~~v~~a--~~~~~al~~~----~~~~~dlil~D~~--mp~~d--G~el~~~ir~~~~~~~iPii~lt~~~~~ 87 (123)
T d1mb3a_ 18 HDLLEAQGYETLQT--REGLSALSIA----RENKPDLILMDIQ--LPEIS--GLEVTKWLKEDDDLAHIPVVAVTAFAMK 87 (123)
T ss_dssp HHHHHHTTCEEEEE--SCHHHHHHHH----HHHCCSEEEEESB--CSSSB--HHHHHHHHHHSTTTTTSCEEEEC-----
T ss_pred HHHHHHCCCEEEEE--CCHHHHHHHH----HhCCCCEEEEEec--cCCCc--HHHHHHHHHhCCCcCCCCeEEEEEecCH
Confidence 34556789998874 3432210011 1125689999832 33323 3444444433 246799998866442
Q ss_pred CCc-Cccc--eeEEEecCCCHHHHHHHHHHHHH
Q 008751 87 TLP-DSLD--RLEVSFTMPMPKDLLSHLQMICA 116 (555)
Q Consensus 87 ~L~-~l~~--~l~I~FkrPs~~eI~srL~~Ic~ 116 (555)
... ..+. ...+-.++.+..++..++..+..
T Consensus 88 ~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~ 120 (123)
T d1mb3a_ 88 GDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (123)
T ss_dssp -CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 211 1222 23344455588899988887763
No 48
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=36.47 E-value=15 Score=30.14 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=56.7
Q ss_pred hHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-cCCcEEEEecCCCCC-
Q 008751 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNIT- 87 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-SKrPIILtCND~n~~- 87 (555)
..+.+..||.|.... +..+ ....+....+.+||+| + .|.+. .|+..+.++-+. ...|||+++...+..
T Consensus 17 ~~~L~~~g~~v~~~~--~~~~----al~~l~~~~~dlil~D-~-~mP~~--~G~el~~~lr~~~~~~pvI~lT~~~~~~~ 86 (140)
T d1qkka_ 17 QQTLELAGFTVSSFA--SATE----ALAGLSADFAGIVISD-I-RMPGM--DGLALFRKILALDPDLPMILVTGHGDIPM 86 (140)
T ss_dssp HHHHHHTTCEEEEES--CHHH----HHHTCCTTCCSEEEEE-S-CCSSS--CHHHHHHHHHHHCTTSCEEEEECGGGHHH
T ss_pred HHHHHHCCCEEEEeC--ChHH----HHHHHhccCcchHHHh-h-ccCCC--CHHHHHHHHHHhCCCCcEEEEECCCCHHH
Confidence 455677899988763 3221 1112233467899998 2 24332 255566665554 458999998664321
Q ss_pred CcCccc--eeEEEecCCCHHHHHHHHHHHHHHc
Q 008751 88 LPDSLD--RLEVSFTMPMPKDLLSHLQMICAAE 118 (555)
Q Consensus 88 L~~l~~--~l~I~FkrPs~~eI~srL~~Ic~kE 118 (555)
..+.+. ...+-.++.+..++...++.+..+.
T Consensus 87 ~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~ 119 (140)
T d1qkka_ 87 AVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 119 (140)
T ss_dssp HHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEeecCCCCHHHHHHHHHHHHHHH
Confidence 111111 2455556668888888888776543
No 49
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=35.15 E-value=3.5 Score=35.66 Aligned_cols=39 Identities=21% Similarity=0.504 Sum_probs=28.2
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEecC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtCND 83 (555)
.-+.+++||+|.|++ .||...+..+++.. ++.+|+.+-.
T Consensus 147 ~l~~lViDEad~ll~--~~f~~~v~~I~~~~~~~~Q~il~SAT 187 (209)
T d1q0ua_ 147 TAHILVVDEADLMLD--MGFITDVDQIAARMPKDLQMLVFSAT 187 (209)
T ss_dssp GCCEEEECSHHHHHH--TTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred cceEEEEeecccccc--cccHHHHHHHHHHCCCCCEEEEEEcc
Confidence 347899999999985 46788888888763 3456665533
No 50
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.61 E-value=4.2 Score=36.09 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=27.6
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC--CcEEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK--GPVILTS 81 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK--rPIILtC 81 (555)
+-+.+++||||.|++ .||...+.++++..+ +.+|+.+
T Consensus 151 ~l~~lVlDEad~lld--~~f~~~v~~I~~~~~~~~Q~vl~S 189 (212)
T d1qdea_ 151 KIKMFILDEADEMLS--SGFKEQIYQIFTLLPPTTQVVLLS 189 (212)
T ss_dssp TCCEEEEETHHHHHH--TTCHHHHHHHHHHSCTTCEEEEEE
T ss_pred cceEEeehhhhhhcc--cchHHHHHHHHHhCCCCCeEEEEE
Confidence 457999999999985 468889999988743 3355443
No 51
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=34.26 E-value=19 Score=30.04 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=24.8
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEE
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILT 80 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILt 80 (555)
....+||+||+|.+..+ .+....+..+....+.|.++.
T Consensus 124 ~~~~~vIiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~l~ 161 (200)
T d1wp9a1 124 EDVSLIVFDEAHRAVGN-YAYVFIAREYKRQAKNPLVIG 161 (200)
T ss_dssp TSCSEEEEETGGGCSTT-CHHHHHHHHHHHHCSSCCEEE
T ss_pred cccceEEEEehhhhhcc-hhHHHHHHHHHhcCCCCcEEE
Confidence 35679999999988754 334445555666666664443
No 52
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=31.02 E-value=5.2 Score=35.08 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=25.7
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc--CCcEEEEe
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTS 81 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS--KrPIILtC 81 (555)
.=+.+++||||.|++. |+...+.++++.. ++.+|+.+
T Consensus 145 ~l~~lViDEad~l~~~--~~~~~i~~I~~~~~~~~Q~i~~S 183 (208)
T d1hv8a1 145 NVKYFILDEADEMLNM--GFIKDVEKILNACNKDKRILLFS 183 (208)
T ss_dssp SCCEEEEETHHHHHTT--TTHHHHHHHHHTSCSSCEEEEEC
T ss_pred cCcEEEEEChHHhhcC--CChHHHHHHHHhCCCCCeEEEEE
Confidence 3469999999988754 4556788888754 34555554
No 53
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}
Probab=30.37 E-value=1.1e+02 Score=23.97 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=50.0
Q ss_pred hHHHhhCCCceEEEeCCCc-ccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-cCCcEEEEecCCCCC
Q 008751 10 CEAAQHADDEVVEVIHIPD-DENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNIT 87 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDd-R~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-SKrPIILtCND~n~~ 87 (555)
+...+..||.|.....+.+ .. ... ....+.+||+|= .|.+.| |+..+.++-+. .+.|||+++......
T Consensus 19 ~~~L~~~g~~v~~~~~~~~al~--~l~----~~~~~dliilD~--~lp~~~--G~el~~~ir~~~~~~pii~lt~~~~~~ 88 (118)
T d2b4aa1 19 QYHLNQLGAEVTVHPSGSAFFQ--HRS----QLSTCDLLIVSD--QLVDLS--IFSLLDIVKEQTKQPSVLILTTGRHEL 88 (118)
T ss_dssp HHHHHHTTCEEEEESSHHHHHH--TGG----GGGSCSEEEEET--TCTTSC--HHHHHHHHTTSSSCCEEEEEESCC--C
T ss_pred HHHHHhcCCCeEEECCHHHHHH--HHH----hcCCCCEEEEeC--CCCCCC--HHHHHHHHHhcCCCCcEEEEECCccHH
Confidence 4556778998887654321 11 111 122467999985 233322 34444444333 357999887654322
Q ss_pred CcCccc-eeEEEecCCCHHHHHHHHHH
Q 008751 88 LPDSLD-RLEVSFTMPMPKDLLSHLQM 113 (555)
Q Consensus 88 L~~l~~-~l~I~FkrPs~~eI~srL~~ 113 (555)
.. .+. ...+-.++.+.+++..+++.
T Consensus 89 ~~-~~~~~~dyl~KP~~~~eL~~~i~~ 114 (118)
T d2b4aa1 89 IE-SSEHNLSYLQKPFAISELRAAIDY 114 (118)
T ss_dssp CC-CSSSCEEEEESSCCHHHHHHHHHH
T ss_pred HH-HhhcCCCEEECCCCHHHHHHHHHH
Confidence 21 121 23444466688999888864
No 54
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.38 E-value=18 Score=26.88 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 008751 121 ELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (555)
Q Consensus 121 ~Id~~~L~~Li~~S~GDIRqaLN~LQf~s 149 (555)
.++.++|+.++..++|++-++++.|=.+.
T Consensus 22 ~~D~~vI~~VL~a~~G~vd~aid~LL~Ms 50 (59)
T d1wgla_ 22 NMDQEVIRSVLEAQRGNKDAAINSLLQMG 50 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 68999999999999999999999885433
No 55
>d1sxja1 a.80.1.1 (A:548-693) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.06 E-value=1.7 Score=37.73 Aligned_cols=44 Identities=16% Similarity=-0.009 Sum_probs=30.8
Q ss_pred CCCCCcccccccCCCccCCCCCch--h---HHHHHHHHHhhhhhhhcccc
Q 008751 166 PELFDPDAGHHMLPKKIPWGFPSQ--L---SELVVKEIMKSLSLMEENST 210 (555)
Q Consensus 166 ~~pFD~i~g~~l~p~i~p~~~P~~--L---~el~l~Ei~~si~~~ee~~~ 210 (555)
++||| ++++++.++++..+--.. + .++++.|-....+++||||.
T Consensus 2 l~pFd-~~~kll~~~~~~~~~~~~~~i~dk~~lfF~D~~lvpL~vqENYl 50 (146)
T d1sxja1 2 LKPFD-IAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYL 50 (146)
T ss_dssp SHHHH-HHHHHTBGGGTSTTGGGTSCHHHHHHHHTTSTTTHHHHHHHHSS
T ss_pred CCHHH-HHHHHhcccccCccccccCCHHHHHHHHhcccchhHHHHHhhhc
Confidence 67999 899999888753211111 1 77777777888888887774
No 56
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.87 E-value=14 Score=26.91 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=27.5
Q ss_pred HHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 008751 116 AAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (555)
Q Consensus 116 ~kEgl~Id~~~L~~Li~~S~GDIRqaLN~LQf 147 (555)
.+.|+.=+-..|.+|++.-+|||.++|-.+|.
T Consensus 18 ~aMGFsneGGWLt~LL~skn~dI~~aLD~iq~ 49 (52)
T d2k0bx1 18 LSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHTCCCSSSCHHHHHHHTTSCHHHHHHHTTC
T ss_pred HHcCCCCcchHHHHHHHHcCCCHHHHHHHHhh
Confidence 34578777789999999999999999988875
No 57
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.18 E-value=45 Score=26.01 Aligned_cols=98 Identities=11% Similarity=0.005 Sum_probs=54.2
Q ss_pred hHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHHcCCcEEEEecCCCCC-C
Q 008751 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNIT-L 88 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liekSKrPIILtCND~n~~-L 88 (555)
..+-+..||.|...+...+-- ..+....+.+||+|= .|.+.| ++..++.+-.....|||+++...+.. .
T Consensus 18 ~~~L~~~g~~v~~a~~~~~a~------~~~~~~~~dliilD~--~mp~~~--g~~~~~~~~~~~~~piI~lt~~~~~~~~ 87 (120)
T d1zgza1 18 QSYFTQEGYTVSVTASGAGLR------EIMQNQSVDLILLDI--NLPDEN--GLMLTRALRERSTVGIILVTGRSDRIDR 87 (120)
T ss_dssp HHHHHHTTCEEEEESSHHHHH------HHHHHSCCSEEEEES--CCSSSC--HHHHHHHHHTTCCCEEEEEESSCCHHHH
T ss_pred HHHHHHCCCEEEEECCHHHHH------HHHHhcCCCEEeeeh--hhccch--hHHHHHHHhccCCCeEEEEEccCCHHHH
Confidence 344567789887654422110 111223578999964 233322 44455444444567899887665421 1
Q ss_pred cCccc--eeEEEecCCCHHHHHHHHHHHHHH
Q 008751 89 PDSLD--RLEVSFTMPMPKDLLSHLQMICAA 117 (555)
Q Consensus 89 ~~l~~--~l~I~FkrPs~~eI~srL~~Ic~k 117 (555)
..-+. ...+-.++....++..+++.+.++
T Consensus 88 ~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR 118 (120)
T d1zgza1 88 IVGLEMGADDYVTKPLELRELVVRVKNLLWR 118 (120)
T ss_dssp HHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 11122 234555666888999998877654
No 58
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.35 E-value=43 Score=29.92 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=26.6
Q ss_pred CCCcEEEEeCCCCCCcccHH---HHHHHHHHHHHcCCcEEEEecC
Q 008751 42 HVKPLILIEDVDVFFPEDRG---FIAGIQQIAEKAKGPVILTSNS 83 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrG---f~sAL~~liekSKrPIILtCND 83 (555)
.+++||||||.=.=+.-+.| +++.+..+..+..+.+|+++-.
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~ 163 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY 163 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecch
Confidence 35689999999987775444 2333445555555556666654
No 59
>d1myta_ a.1.1.2 (A:) Myoglobin {Yellowfin tuna (Thunnus albacares) [TaxId: 8236]}
Probab=24.05 E-value=14 Score=30.45 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcc---------------ccccccchh
Q 008751 494 AIDLVRESWKKLRDG---------------NTDLRQYAT 517 (555)
Q Consensus 494 ~~~~vq~~w~kl~~~---------------~~dl~~~~~ 517 (555)
+++.||+||.+++.- ||+.+.+-.
T Consensus 2 e~~~v~~sW~~v~~~~~~~g~~~f~~lF~~~P~~~~~F~ 40 (146)
T d1myta_ 2 DFDAVLKCWGPVEADYTTMGGLVLTRLFKEHPETQKLFP 40 (146)
T ss_dssp HHHHHHHTTHHHHTTHHHHHHHHHHHHHHHCGGGGGGCT
T ss_pred hHHHHHHHHHHHhcCHHhHHHHHHHHHHHHCccHHHhhh
Confidence 578999999988654 788887764
No 60
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.95 E-value=24 Score=25.67 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Q 008751 121 ELQQHLLVQLIESCRADIRKTIMHL 145 (555)
Q Consensus 121 ~Id~~~L~~Li~~S~GDIRqaLN~L 145 (555)
.+|.++|+.++..++|++-.|++.|
T Consensus 25 ~~D~~VI~~VL~a~~G~vd~aidaL 49 (54)
T d1mn3a_ 25 DMDPSLIEDVCIAKKSRIEPCVDAL 49 (54)
T ss_dssp TSCHHHHHHHHSCSSCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6899999999999999999999887
No 61
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=21.52 E-value=6.5 Score=35.40 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=24.1
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHcC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK 74 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekSK 74 (555)
.-+.+++||+|.|++ .||...+.++++..+
T Consensus 172 ~v~~lViDEaD~ll~--~~f~~~i~~Il~~~~ 201 (238)
T d1wrba1 172 FCKYIVLDEADRMLD--MGFEPQIRKIIEESN 201 (238)
T ss_dssp TCCEEEEETHHHHHH--TTCHHHHHHHHHSSC
T ss_pred ccceeeeehhhhhhh--hccHHHHHHHHHHhc
Confidence 347999999999985 468888999998654
No 62
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.17 E-value=38 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=27.0
Q ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHc---CCcEEEEecCCC
Q 008751 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---KGPVILTSNSNN 85 (555)
Q Consensus 43 kkkLILiDEVD~Lf~eDrGf~sAL~~liekS---KrPIILtCND~n 85 (555)
+.+++||||++.-.+ .-.+..|.+++++. ..-||+|+.++.
T Consensus 225 ~~~llllDEp~~~Ld--~~~~~~l~~~l~~~~~~~~qviv~TH~~~ 268 (292)
T g1f2t.1 225 EISLLILDEPTPYLD--EERRRKLITIMERYLKKIPQVILVSHDEE 268 (292)
T ss_dssp SCSEEEEESCSCTTC--HHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred CCCEEEEeCCcccCC--HHHHHHHHHHHHHHHhCCCEEEEEeecHH
Confidence 567999999995553 33455555555542 136999988854
No 63
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=20.95 E-value=79 Score=24.61 Aligned_cols=98 Identities=10% Similarity=0.112 Sum_probs=54.9
Q ss_pred hHHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-cCCcEEEEecCCCCC-
Q 008751 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNIT- 87 (555)
Q Consensus 10 ~~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-SKrPIILtCND~n~~- 87 (555)
+..-+..||.|.+.+...+-- . .+....+.+||+|=- |.+.| |+..++++-+. ...|||+++...+..
T Consensus 17 ~~~L~~~G~~v~~a~~g~eal--~----~l~~~~~dliilD~~--mP~~~--G~e~~~~i~~~~~~~pvi~lt~~~~~~~ 86 (119)
T d2pl1a1 17 KVQIQDAGHQVDDAEDAKEAD--Y----YLNEHIPDIAIVDLG--LPDED--GLSLIRRWRSNDVSLPILVLTARESWQD 86 (119)
T ss_dssp HHHHHHTTCEEEEESSHHHHH--H----HHHHSCCSEEEECSC--CSSSC--HHHHHHHHHHTTCCSCEEEEESCCCHHH
T ss_pred HHHHHHCCCEEEEECCHHHHH--H----HHHhcccceeehhcc--CCCch--hHHHHHHHHhcCcccceEeeeccCCHHH
Confidence 344567899888755533211 0 011235789999842 22222 44556655554 467999988775421
Q ss_pred CcCccc-e-eEEEecCCCHHHHHHHHHHHHHH
Q 008751 88 LPDSLD-R-LEVSFTMPMPKDLLSHLQMICAA 117 (555)
Q Consensus 88 L~~l~~-~-l~I~FkrPs~~eI~srL~~Ic~k 117 (555)
..+.+. . ..+--++.+..++..+++.+.++
T Consensus 87 ~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~lrR 118 (119)
T d2pl1a1 87 KVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (119)
T ss_dssp HHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 111111 1 34444556888999999887653
No 64
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=20.66 E-value=55 Score=25.71 Aligned_cols=96 Identities=10% Similarity=0.045 Sum_probs=51.0
Q ss_pred HHHhhCCCceEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCCcccHHHHHHHHHHHHH-cCCcEEEEecCCCCC-C
Q 008751 11 EAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNIT-L 88 (555)
Q Consensus 11 ~iAkelGy~VIELNASDdR~rn~~v~gsl~~~kkkLILiDEVD~Lf~eDrGf~sAL~~liek-SKrPIILtCND~n~~-L 88 (555)
.+.+..||+|.+.+...+- ...+....+.+||+|= .|.+.| |+..+.++-+. ...|||+++...... .
T Consensus 21 ~~L~~~g~~v~~a~~~~~a------~~~l~~~~~dlii~D~--~mp~~~--G~el~~~l~~~~~~~piI~~t~~~~~~~~ 90 (123)
T d1krwa_ 21 RALAGAGLTCTTFENGNEV------LAALASKTPDVLLSDI--RMPGMD--GLALLKQIKQRHPMLPVIIMTAHSDLDAA 90 (123)
T ss_dssp HHHHHTTCEEEEESSSHHH------HHHHTTCCCSEEEECC--SSSSST--THHHHHHHHHHSSSCCEEESCCCSCHHHH
T ss_pred HHHHHCCCEEEEeCCHHHH------HHHHHhCCCCEEEehh--hcCCch--HHHHHHHHHHhCCCCeEEEEecCCCHHHH
Confidence 4556779988875443311 1111234678999992 233222 34445554443 467999988775421 1
Q ss_pred cCccc-e-eEEEecCCCHHHHHHHHHHHHH
Q 008751 89 PDSLD-R-LEVSFTMPMPKDLLSHLQMICA 116 (555)
Q Consensus 89 ~~l~~-~-l~I~FkrPs~~eI~srL~~Ic~ 116 (555)
.+.+. . ..+--|+.+..++..++..+..
T Consensus 91 ~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l~ 120 (123)
T d1krwa_ 91 VSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (123)
T ss_dssp HHHHHHTEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCeEEeCcCCHHHHHHHHHHHHH
Confidence 11111 1 2333344466778888776654
No 65
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=20.48 E-value=39 Score=26.82 Aligned_cols=75 Identities=9% Similarity=-0.002 Sum_probs=43.8
Q ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHHHHH---HcCCcEEEEecCCCCC-CcCccc--eeEEEecCCCHHHHHHHHHHHH
Q 008751 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNIT-LPDSLD--RLEVSFTMPMPKDLLSHLQMIC 115 (555)
Q Consensus 42 ~kkkLILiDEVD~Lf~eDrGf~sAL~~lie---kSKrPIILtCND~n~~-L~~l~~--~l~I~FkrPs~~eI~srL~~Ic 115 (555)
.++.+||+|=- |.+.| |...+.++-+ ....|||+++...+.. ..+.++ ...+-.++.+..++..+|..+.
T Consensus 48 ~~~dlii~D~~--mP~~d--G~el~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l 123 (128)
T d1jbea_ 48 GGYGFVISDWN--MPNMD--GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp CCCCEEEEESC--CSSSC--HHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEecc--cccCC--HHHHHHHHHhCccCCCCcEEEEECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 46789998642 32222 2333333322 2467999988765421 111122 1345556668999999999998
Q ss_pred HHcCC
Q 008751 116 AAEKV 120 (555)
Q Consensus 116 ~kEgl 120 (555)
.+-|+
T Consensus 124 ~r~~~ 128 (128)
T d1jbea_ 124 EKLGM 128 (128)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 87664
Done!