Query 008752
Match_columns 555
No_of_seqs 234 out of 624
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 16:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02337 lipoxygenase 100.0 3E-160 6E-165 1339.1 44.6 536 9-552 1-536 (866)
2 PLN02305 lipoxygenase 100.0 3E-156 7E-161 1302.3 44.0 506 35-552 82-590 (918)
3 PLN02264 lipoxygenase 100.0 2E-155 4E-160 1296.6 43.0 506 35-552 85-592 (919)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 5E-110 1E-114 929.8 11.3 356 187-552 1-356 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 3.6E-38 7.7E-43 290.4 14.6 136 36-178 2-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.4 1.7E-12 3.6E-17 113.6 10.6 84 69-165 20-104 (105)
7 PF01477 PLAT: PLAT/LH2 domain 99.2 4.3E-11 9.4E-16 105.0 9.1 94 67-176 16-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 99.1 4.2E-10 9.1E-15 100.0 11.0 95 67-176 18-116 (116)
9 cd02899 PLAT_SR Scavenger rece 99.1 2.7E-10 5.9E-15 102.0 9.4 80 68-166 19-99 (109)
10 cd01753 PLAT_LOX PLAT domain o 99.0 3.3E-09 7.1E-14 95.3 9.4 87 68-169 19-108 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 98.8 3.6E-08 7.7E-13 89.1 11.3 94 68-176 19-118 (120)
12 cd01752 PLAT_polycystin PLAT/L 98.7 9.6E-08 2.1E-12 86.4 10.7 95 68-175 19-117 (120)
13 cd01754 PLAT_plant_stress PLAT 98.6 2.4E-07 5.2E-12 85.4 9.5 89 68-168 19-119 (129)
14 cd01757 PLAT_RAB6IP1 PLAT/LH2 98.6 4.6E-07 9.9E-12 81.9 10.1 78 68-168 20-100 (114)
15 cd01755 PLAT_lipase PLAT/ LH2 89.9 2.7 5.8E-05 38.2 9.4 77 68-161 19-105 (120)
16 cd01758 PLAT_LPL PLAT/ LH2 dom 61.5 73 0.0016 29.9 9.5 77 69-161 21-119 (137)
17 PF06232 ATS3: Embryo-specific 38.4 79 0.0017 29.5 5.7 58 105-166 60-117 (125)
18 COG3101 Uncharacterized protei 38.0 15 0.00033 35.1 1.0 38 500-541 27-64 (180)
19 KOG2080 Uncharacterized conser 32.9 19 0.00042 42.8 1.0 49 121-169 1020-1071(1295)
20 PF03802 CitX: Apo-citrate lya 31.2 29 0.00062 33.7 1.7 51 187-255 90-141 (170)
21 cd01759 PLAT_PL PLAT/LH2 domai 30.7 4.2E+02 0.009 24.2 9.2 78 67-161 16-99 (113)
22 PF04315 DUF462: Protein of un 27.0 27 0.00059 33.9 0.7 37 500-540 17-53 (164)
No 1
>PLN02337 lipoxygenase
Probab=100.00 E-value=2.6e-160 Score=1339.05 Aligned_cols=536 Identities=75% Similarity=1.238 Sum_probs=502.4
Q ss_pred hHhHhhhhhccCccccccccccCCCcceEEEEEEEEecccccccccccchhhHHHhhcCCcEEEEEEeeecCCCcccccC
Q 008752 9 MFHKLKEKVCAWPITGTKTKGVDESKTKIKGTVVLMKKNVLDFNDMKASFLDRLHELLGKGVSMQLISAVNADPANELRG 88 (555)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~l~LVS~~~~d~~t~~~g 88 (555)
|++++++.++|.- ....+.+|||+|++|+|+++|++++.++++|.++|++|++|+|||||++.++|+||++|
T Consensus 1 ~~~~~~~~~~~~~--------~~~~~~~~~~~v~l~~k~~ld~~~~~~~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~g 72 (866)
T PLN02337 1 MLGGIIDAITGSN--------NKTKKEKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGKGVSLQLISSTVVDPENGLRG 72 (866)
T ss_pred CcccccHhhhcCC--------ccCccceEEEEEEEEEecccchhhcccchhhhHHHhcCCeEEEEEEeccccccccCCcc
Confidence 4455666666630 01122589999999999999999999999999999999999999999998888898899
Q ss_pred ccCccccccccccccCCCCCceEEEEEEeeccCCCCCceEEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCCCC
Q 008752 89 RLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHR 168 (555)
Q Consensus 89 k~s~~~~l~~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~ 168 (555)
|+++++.|++|..+.....+++++|+|+|+|+++||+||||+|+|.|++||||++|+|+++|++++|||+||||||+.++
T Consensus 73 k~~k~a~l~~w~~~~~~~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~ 152 (866)
T PLN02337 73 KLGKEAYLEKWITTITSLTAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKR 152 (866)
T ss_pred ccCCccchhhhccCCCCCCCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCC
Confidence 99999999999976444456677999999999999999999999999999999999999999889999999999999999
Q ss_pred CccceeeecccccccCCCChHhHHHHHHHHHhhhCCCCCCCcccCeEEeccccCCCCCCCCCCCCCcccCCCCCCCCCCC
Q 008752 169 YKYDRVFFSNKTYLPCQTPEPLRKYRREELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPR 248 (555)
Q Consensus 169 ~~~~Riff~nkayLP~~tp~~L~~~Re~EL~~lRg~g~Gerk~~dRiYdydvYndlG~Pd~~~~~~RPvLGgs~~~PYPR 248 (555)
++.+||||+||+|||++||++|++|||+||++|||||+||||+||||||||||||||+||++++++||||||+++|||||
T Consensus 153 ~~~~RiFF~nk~ylp~~tP~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPR 232 (866)
T PLN02337 153 YRYDRVFFSNKTYLPSQTPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPR 232 (866)
T ss_pred CCCCceEecCCCcCcccccHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCCCcccccCCCCccCcccccchhhchHHHHHHhhhhhHhhhccCCCCCCCCHHHHHHHhc
Q 008752 249 RGRTGRKPTKTDPNSERRLPLISLDIYVPRDERFGHLKFSDFLAYALKSLVQILLPEITSLCDKTINEFDSFDDVLNLYE 328 (555)
Q Consensus 249 R~RTGR~~~~~D~~~esr~~~~~~~~yvPrDE~Fs~~K~~~f~~~~lk~~~~~~~p~l~~~~~~~~~~f~sf~di~~Ly~ 328 (555)
||||||+|+++||.+|||.+...-.+||||||+|+++|+++|.++++||++|.++|.|+++++.+..+|++|+||++||.
T Consensus 233 R~rTgr~~t~~dp~~esr~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~ 312 (866)
T PLN02337 233 RGRTGRKPTKTDPNSESRLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYE 312 (866)
T ss_pred cccCCCCCCCCCCccccccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhh
Confidence 99999999999999999976531147999999999999999999999999999999999999888999999999999999
Q ss_pred CCCcCCCccccchhccccchHHHHHhhhcccccccccCCchhhhhccccccCcHHHHHHHhcCCCcccccccccCCCCCC
Q 008752 329 GGIKLPNSQTVSKIRDRIPWEMLKELVRNDGERFLKFPMPDVIKEDRSAWRTDEEFAREMLAGVNPVIISRLQEFPPASN 408 (555)
Q Consensus 329 ~~~~lp~~~~~~~~~~~~p~~~~~~~~~~~~~~~lkfp~P~vi~~~~~~W~~D~eFgrQ~LaG~NP~~I~~~~~~P~~s~ 408 (555)
+|+.+|..+..+.+++.+|+++++++++++++.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+
T Consensus 313 ~g~~lp~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ 392 (866)
T PLN02337 313 GGIKLPNGPLLEELRKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSK 392 (866)
T ss_pred cCCCCCCchHHHHhhhcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCccc
Confidence 99999986666678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCcccHHHHHhhcCCCcHHHHhhcCcEEEEcCCcccccccccccCCCCccccceeEEEecCCCceeeEEEE
Q 008752 409 LDPKVYGNQHSSITRADIERNMNELTIDEAIENKKLFTLDHHDALMPYLRRINSTNTKTYASRTLLLLQNDGTLKPLAIE 488 (555)
Q Consensus 409 Ldp~~yg~~~~~it~e~i~~~l~G~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~yAp~~Lffl~~dG~L~PIAIq 488 (555)
|||++||+++|+||++||++.|+|+||+|||++|||||+||||.+|||+.++|...+++|||+||||++++|+|+|||||
T Consensus 393 ld~~~yg~~~s~iT~e~v~~~L~g~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k~yA~~tLffl~~dG~L~PlAIq 472 (866)
T PLN02337 393 LDPKKYGDQNSSITEEHIEKNLEGLTVQEALEKNRLFILDHHDALMPYLRRINSTSTKTYATRTLLFLKDDGTLKPLAIE 472 (866)
T ss_pred CChhhcCCccCccCHHHHHhccCCccHHHHHHcCCEEEEecchhcCcccccccCCCCccccceeEEEECCCCCEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCeEEeCCCCCCCCcHHHHHHHHHHhcccchhHHHHHhhhccccceeeeee
Q 008752 489 LSLPHPQGDHHGAVSKVFTPAENGVEGSVWQLAKAYAAVNDSGYHQLVSHWCDIKKENIGWQLN 552 (555)
Q Consensus 489 L~~p~~~~~~~~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HQlisHllrTHlv~E~~~v~ 552 (555)
|++|++.++.+++.++||||+++++++|.|+||||||++||++|||+|+||++|||++|||+|.
T Consensus 473 L~~p~~~~~~~g~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIA 536 (866)
T PLN02337 473 LSLPHPQGDKFGAVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIA 536 (866)
T ss_pred eccCCCCcccCCCCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 9999877666778899999998777799999999999999999999999999999999999985
No 2
>PLN02305 lipoxygenase
Probab=100.00 E-value=3.3e-156 Score=1302.25 Aligned_cols=506 Identities=39% Similarity=0.676 Sum_probs=473.7
Q ss_pred ceEEEEEEEEecccccccccccchhhHHHhhcCCcEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEE
Q 008752 35 TKIKGTVVLMKKNVLDFNDMKASFLDRLHELLGKGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFT 114 (555)
Q Consensus 35 ~~~k~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~ 114 (555)
.++||+|++|+|+++|++++.++++|+++|++|++|+|||||++.++ +|| +||++ ++.|++|..+ ....++++.|+
T Consensus 82 ~~i~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~-~~g-~gk~~-~~~l~~~~~~-~~~~~~~~~~~ 157 (918)
T PLN02305 82 IDVRAVITIRKKIKEKITEKFEDQWEYFMNGIGQGILIQLVSEEIDP-VTG-SGKSV-ESSVRGWLPK-PSNDPHIVEYA 157 (918)
T ss_pred CeEEEEEEEEeecccchhhcccchhhHHHHhhCCeEEEEEEeccccC-CCC-Ccccc-cchhhccccC-CCCCCCceEEE
Confidence 68999999999999999999999999999999999999999988655 677 89888 9999999965 33225567999
Q ss_pred EEeeccCCCCCceEEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCCCCCccceeeecccccccCCCChHhHHHH
Q 008752 115 ITFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFFSNKTYLPCQTPEPLRKYR 194 (555)
Q Consensus 115 v~f~~~~dfG~pgai~V~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~~~~~Riff~nkayLP~~tp~~L~~~R 194 (555)
|+|+|+++||+||||+|+|.|++||||++|+|+++|+ ++|||+||||||+.++++.+||||+||+|||++||++|++||
T Consensus 158 ~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~-g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~R 236 (918)
T PLN02305 158 ADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDD-GPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLR 236 (918)
T ss_pred EEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCC-CeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCcccCeEEeccccCCCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCCCCCCCCCCccccCCCCccc
Q 008752 195 REELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSERRLPLISLDI 274 (555)
Q Consensus 195 e~EL~~lRg~g~Gerk~~dRiYdydvYndlG~Pd~~~~~~RPvLGgs~~~PYPRR~RTGR~~~~~D~~~esr~~~~~~~~ 274 (555)
|+||++|||||+||||+||||||||||||||+||++++++||||||++ |||||||||||||+++||.+|||.+... .+
T Consensus 237 e~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~-~PYPRR~RTGR~~t~~Dp~~Esr~~~~~-~~ 314 (918)
T PLN02305 237 REDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEE-WPYPRRCRTGRPPTKKDPLCESRIEKPH-PV 314 (918)
T ss_pred HHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCC-CCCCCcCcCCCCCCCCCCcccccccCCC-Cc
Confidence 999999999999999999999999999999999999999999999987 9999999999999999999999975443 47
Q ss_pred ccCCCCccCcccccchhhchHHHHHHhhhhhHhhhccCCCCCCCCHHHHHHHhcCCCcCCCccccchhccccch--HHHH
Q 008752 275 YVPRDERFGHLKFSDFLAYALKSLVQILLPEITSLCDKTINEFDSFDDVLNLYEGGIKLPNSQTVSKIRDRIPW--EMLK 352 (555)
Q Consensus 275 yvPrDE~Fs~~K~~~f~~~~lk~~~~~~~p~l~~~~~~~~~~f~sf~di~~Ly~~~~~lp~~~~~~~~~~~~p~--~~~~ 352 (555)
||||||+|+++|+++|.++++|+++|.++|.|+++++.+..+|++|+||++||++|+.||.. ..+.+++ +|+ ++++
T Consensus 315 YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~-~~~~~~~-~p~~~~~~~ 392 (918)
T PLN02305 315 YVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTE-EPKDIGL-NPFLGNFMK 392 (918)
T ss_pred CCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCch-hhhhhhc-CCchHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999872 1133433 887 8999
Q ss_pred HhhhcccccccccCCchhhhhccccccCcHHHHHHHhcCCCcccccccccCCCCCCCCccccCCCCCcccHHHHHhhcCC
Q 008752 353 ELVRNDGERFLKFPMPDVIKEDRSAWRTDEEFAREMLAGVNPVIISRLQEFPPASNLDPKVYGNQHSSITRADIERNMNE 432 (555)
Q Consensus 353 ~~~~~~~~~~lkfp~P~vi~~~~~~W~~D~eFgrQ~LaG~NP~~I~~~~~~P~~s~Ldp~~yg~~~~~it~e~i~~~l~G 432 (555)
++ +++++.+||||+|+||+.|+++|++|+|||||+|||+||++|++|++||++|+|||++||+++|+||++||+..|+|
T Consensus 393 ~i-~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G 471 (918)
T PLN02305 393 QV-LSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG 471 (918)
T ss_pred Hh-hhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC
Confidence 99 78889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHhhcCcEEEEcCCcccccccccccCCCC-ccccceeEEEecCCCceeeEEEEecCCCCCCCCCCCCCeEEeCCCC
Q 008752 433 LTIDEAIENKKLFTLDHHDALMPYLRRINSTNT-KTYASRTLLLLQNDGTLKPLAIELSLPHPQGDHHGAVSKVFTPAEN 511 (555)
Q Consensus 433 ~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~-~~yAp~~Lffl~~dG~L~PIAIqL~~p~~~~~~~~~~~~VftP~d~ 511 (555)
+||+|||++|||||+||||++|||+.++|.+.+ +.|||+||||++++|+|+||||||+++++.++ ...++||||+++
T Consensus 472 ~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~--p~~~~VftP~~d 549 (918)
T PLN02305 472 MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSS--PGNKFVYTHGHD 549 (918)
T ss_pred CcHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCC--CCcceeeCCCCC
Confidence 999999999999999999999999999998664 59999999999999999999999999865433 356789999877
Q ss_pred CCCCcHHHHHHHHHHhcccchhHHHHHhhhccccceeeeee
Q 008752 512 GVEGSVWQLAKAYAAVNDSGYHQLVSHWCDIKKENIGWQLN 552 (555)
Q Consensus 512 ~~~~~~W~LAK~~v~~aD~~~HQlisHllrTHlv~E~~~v~ 552 (555)
+++.|.|+||||||++||++|||+|+||++|||++|||+|.
T Consensus 550 ~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIA 590 (918)
T PLN02305 550 ATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIA 590 (918)
T ss_pred CCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999984
No 3
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.7e-155 Score=1296.64 Aligned_cols=506 Identities=40% Similarity=0.713 Sum_probs=472.7
Q ss_pred ceEEEEEEEEecccccccccccchhhHHHhhcCCcEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEE
Q 008752 35 TKIKGTVVLMKKNVLDFNDMKASFLDRLHELLGKGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFT 114 (555)
Q Consensus 35 ~~~k~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~ 114 (555)
.++||+|++|+|+++|++++.++++|+++|++|++|+|||||++.++ +|| +||+|+++.|++|..+ ....++++.|+
T Consensus 85 ~~i~~~v~~~~~~~~~~~~~~~~~~D~~~~~~G~~v~lqLVSs~~~~-~tg-~~~~~~~a~l~~~~~~-~~~~~~~~~y~ 161 (919)
T PLN02264 85 FKVRAVVTVRNKNKEDLKETLVKHLDAFTDKIGRNVVLELISTQVDP-KTK-EPKKSKAAVLKDWSKK-SNIKAERVHYT 161 (919)
T ss_pred EEEEEEEEEEeccccchhhcccchhhHHHHHhCCeEEEEEEeccccC-CCC-CccCCCcchhcccccC-CCCCCCceEEE
Confidence 57999999999999999999999999999999999999999988655 675 7899999999999876 34356677999
Q ss_pred EEeeccCCCCCceEEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCCCCCccceeeecccccccCCCChHhHHHH
Q 008752 115 ITFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFFSNKTYLPCQTPEPLRKYR 194 (555)
Q Consensus 115 v~f~~~~dfG~pgai~V~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~~~~~Riff~nkayLP~~tp~~L~~~R 194 (555)
|+|+|+++||+||||+|+|.|++||||++|+|+++|+ ++|||+||||||+.++++.+||||+||+|||++||++|++||
T Consensus 162 ~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~-g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~~~R 240 (919)
T PLN02264 162 AEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFAC-GPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRALR 240 (919)
T ss_pred EEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCC-CcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCcccCeEEeccccCCCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCCCCCCCCCCccccCCCCccc
Q 008752 195 REELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSERRLPLISLDI 274 (555)
Q Consensus 195 e~EL~~lRg~g~Gerk~~dRiYdydvYndlG~Pd~~~~~~RPvLGgs~~~PYPRR~RTGR~~~~~D~~~esr~~~~~~~~ 274 (555)
++||++|||||+||||+||||||||||||||+||++++++||||||++ |||||||||||||+++||.+|||.+... .+
T Consensus 241 e~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~-~PYPRR~RTGR~~t~~dp~~Esr~~~~~-~i 318 (919)
T PLN02264 241 EKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKK-IPYPRRCRTGRLPTDSDMMAESRVEKPL-PM 318 (919)
T ss_pred HHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCC-CCCCCCCcCCCCCCCCCCcccccccCCC-ce
Confidence 999999999999999999999999999999999999999999999986 9999999999999999999999976543 57
Q ss_pred ccCCCCccCcccccchhhchHHHHHHhhhhhHhhhccCCCCCCCCHHHHHHHhcCCCcCCCccccchhccccch-HHHHH
Q 008752 275 YVPRDERFGHLKFSDFLAYALKSLVQILLPEITSLCDKTINEFDSFDDVLNLYEGGIKLPNSQTVSKIRDRIPW-EMLKE 353 (555)
Q Consensus 275 yvPrDE~Fs~~K~~~f~~~~lk~~~~~~~p~l~~~~~~~~~~f~sf~di~~Ly~~~~~lp~~~~~~~~~~~~p~-~~~~~ 353 (555)
||||||+|+++|+++|.++++|+++|.++|.|+++++.+ +|+||+||++||.+|+.+|.. ..+...+.+|+ +++++
T Consensus 319 YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~-~~~~~~~~~p~~~~~~~ 395 (919)
T PLN02264 319 YVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLG-FQDDIFKKFPLPKVVTT 395 (919)
T ss_pred eCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcc-hhhhHhhcCChHHHHHH
Confidence 999999999999999999999999999999999998764 999999999999999999873 11222334898 78898
Q ss_pred hhhcccccccccCCchhhhhccccccCcHHHHHHHhcCCCcccccccccCCCCCCCCccccCCCCCcccHHHHHhhcCCC
Q 008752 354 LVRNDGERFLKFPMPDVIKEDRSAWRTDEEFAREMLAGVNPVIISRLQEFPPASNLDPKVYGNQHSSITRADIERNMNEL 433 (555)
Q Consensus 354 ~~~~~~~~~lkfp~P~vi~~~~~~W~~D~eFgrQ~LaG~NP~~I~~~~~~P~~s~Ldp~~yg~~~~~it~e~i~~~l~G~ 433 (555)
+ +++++.+||||+|++|+.|+++|++|+|||||+|||+||++|++|++||++|+|||+.||+++|+||++||++.|+|+
T Consensus 396 ~-~~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G~ 474 (919)
T PLN02264 396 L-QESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDGL 474 (919)
T ss_pred h-hhcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCCC
Confidence 8 788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhcCcEEEEcCCcccccccccccCCCC-ccccceeEEEecCCCceeeEEEEecCCCCCCCCCCCCCeEEeCCCCC
Q 008752 434 TIDEAIENKKLFTLDHHDALMPYLRRINSTNT-KTYASRTLLLLQNDGTLKPLAIELSLPHPQGDHHGAVSKVFTPAENG 512 (555)
Q Consensus 434 tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~-~~yAp~~Lffl~~dG~L~PIAIqL~~p~~~~~~~~~~~~VftP~d~~ 512 (555)
||+|||++|||||+||||++|||++++|.+.+ +.|||+||||++++|+|+||||||+++++.++ ...++||||++++
T Consensus 475 Tl~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~--~~~~~VftP~~d~ 552 (919)
T PLN02264 475 SVQQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPN--SRSKRVVTPPVDA 552 (919)
T ss_pred cHHHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCC--cCcceeECCCCCC
Confidence 99999999999999999999999999998765 59999999999999999999999999864433 3578999997667
Q ss_pred CCCcHHHHHHHHHHhcccchhHHHHHhhhccccceeeeee
Q 008752 513 VEGSVWQLAKAYAAVNDSGYHQLVSHWCDIKKENIGWQLN 552 (555)
Q Consensus 513 ~~~~~W~LAK~~v~~aD~~~HQlisHllrTHlv~E~~~v~ 552 (555)
+++|.|+||||||++||++|||+|+||++|||++|||+|.
T Consensus 553 ~~~w~W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIA 592 (919)
T PLN02264 553 TSNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILA 592 (919)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhh
Confidence 7899999999999999999999999999999999999985
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=5.4e-110 Score=929.84 Aligned_cols=356 Identities=60% Similarity=0.994 Sum_probs=298.2
Q ss_pred ChHhHHHHHHHHHhhhCCCCCCCcccCeEEeccccCCCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCCCCCCCCCCccc
Q 008752 187 PEPLRKYRREELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSERR 266 (555)
Q Consensus 187 p~~L~~~Re~EL~~lRg~g~Gerk~~dRiYdydvYndlG~Pd~~~~~~RPvLGgs~~~PYPRR~RTGR~~~~~D~~~esr 266 (555)
|++|+++|++||++|||||+||||+||||||||||||||+||++++++|||||||++|||||||||||+|+++||.+|||
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCccCcccccchhhchHHHHHHhhhhhHhhhccCCCCCCCCHHHHHHHhcCCCcCCCccccchhcccc
Q 008752 267 LPLISLDIYVPRDERFGHLKFSDFLAYALKSLVQILLPEITSLCDKTINEFDSFDDVLNLYEGGIKLPNSQTVSKIRDRI 346 (555)
Q Consensus 267 ~~~~~~~~yvPrDE~Fs~~K~~~f~~~~lk~~~~~~~p~l~~~~~~~~~~f~sf~di~~Ly~~~~~lp~~~~~~~~~~~~ 346 (555)
. . .+||||||+|++.|+++|.++++||++|.++|.|++++..+..+|+||+||++||++|+++|. +.+.+.+
T Consensus 81 ~---~-~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~----~~~~~~~ 152 (667)
T PF00305_consen 81 S---G-DIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPT----DLLKKLI 152 (667)
T ss_dssp ----S-SGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--H----HHHCCHT
T ss_pred c---c-cccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchh----hHhhhcC
Confidence 2 1 799999999999999999999999999999999999988889999999999999999999883 3566778
Q ss_pred chHHHHHhhhcccccccccCCchhhhhccccccCcHHHHHHHhcCCCcccccccccCCCCCCCCccccCCCCCcccHHHH
Q 008752 347 PWEMLKELVRNDGERFLKFPMPDVIKEDRSAWRTDEEFAREMLAGVNPVIISRLQEFPPASNLDPKVYGNQHSSITRADI 426 (555)
Q Consensus 347 p~~~~~~~~~~~~~~~lkfp~P~vi~~~~~~W~~D~eFgrQ~LaG~NP~~I~~~~~~P~~s~Ldp~~yg~~~~~it~e~i 426 (555)
|+++++++++.+++.++|||+|+|+++++++|++|+|||||+|||+||++|++|+++|++++|||++||+++++||++||
T Consensus 153 ~~~~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i 232 (667)
T PF00305_consen 153 PLELLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHI 232 (667)
T ss_dssp TSTTCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHH
T ss_pred cHHHHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcHHHHhhcCcEEEEcCCcccccccccccCCCCccccceeEEEecCCCceeeEEEEecCCCCCCCCCCCCCeEE
Q 008752 427 ERNMNELTIDEAIENKKLFTLDHHDALMPYLRRINSTNTKTYASRTLLLLQNDGTLKPLAIELSLPHPQGDHHGAVSKVF 506 (555)
Q Consensus 427 ~~~l~G~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~yAp~~Lffl~~dG~L~PIAIqL~~p~~~~~~~~~~~~Vf 506 (555)
+..|+|+||++||++|||||+||||+++|+++++|....+.|||+||||++++|+|+||||||++|++.+. +..++||
T Consensus 233 ~~~l~g~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~--~~~~~v~ 310 (667)
T PF00305_consen 233 EPQLEGLTLEEALKDGRLFILDYHDLFGPYLNKINEKGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGP--PQFNPVF 310 (667)
T ss_dssp HHHCHCS-HHHHHHTT-EEEEEEGGGTTHHHHHHTTCCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS---EEEEEE
T ss_pred hhccCCCcHHHHHhcCCeEEEeehhhccccccccccCCcEeccceeEEEEcCCCCEeeeEEeccCCCCccc--Cccceee
Confidence 99999999999999999999999999999999999966679999999999999999999999998854322 4568999
Q ss_pred eCCCCCCCCcHHHHHHHHHHhcccchhHHHHHhhhccccceeeeee
Q 008752 507 TPAENGVEGSVWQLAKAYAAVNDSGYHQLVSHWCDIKKENIGWQLN 552 (555)
Q Consensus 507 tP~d~~~~~~~W~LAK~~v~~aD~~~HQlisHllrTHlv~E~~~v~ 552 (555)
||+++++.+|.|+||||||++||++|||+|+||++||+|||||+|.
T Consensus 311 tP~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vA 356 (667)
T PF00305_consen 311 TPSDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVA 356 (667)
T ss_dssp -TTSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_pred ecCCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHH
Confidence 9995555578899999999999999999999999999999999985
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=3.6e-38 Score=290.44 Aligned_cols=136 Identities=46% Similarity=0.832 Sum_probs=126.1
Q ss_pred eEEEEEEEEecccccccccccchhhHHHhhcCCcEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEEE
Q 008752 36 KIKGTVVLMKKNVLDFNDMKASFLDRLHELLGKGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTI 115 (555)
Q Consensus 36 ~~k~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~v 115 (555)
++||+|++|+|+.+++++.. +.+|++.|++|++|+|||||++.++ .|| +||++.++.|++|..+. ++++.|++
T Consensus 2 ~vka~V~v~~k~~~~~~~~~-~~~D~~~~llGk~v~lqLVSs~~d~-~tg-~~k~~~~~~l~~~~~~~----~~e~~y~~ 74 (137)
T cd01751 2 KVKATVTVMKKNKLDLNDDG-SGLDDLDDLLGRSLLLELVSSELDP-KTG-KGKKGKAAFLEGWGKSL----AGESAYEA 74 (137)
T ss_pred EEEEEEEEEEeecccccccc-chhhhHHHhhCCeEEEEEEEeeecC-CCC-CcccccceeeecccccC----CcceEEEE
Confidence 69999999999999999877 9999999999999999999988655 676 99999999999998542 45669999
Q ss_pred EeeccCCCCCceEEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCCCCCccceeeecc
Q 008752 116 TFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFFSN 178 (555)
Q Consensus 116 ~f~~~~dfG~pgai~V~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~~~~~Riff~n 178 (555)
+|+||++||+||||+|+|+|++||||++|+|+++|+.+++||+|||||||.++++.+||||+|
T Consensus 75 ~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 75 EFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred EEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 999999999999999999999999999999999998899999999999999999999999987
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.40 E-value=1.7e-12 Score=113.61 Aligned_cols=84 Identities=42% Similarity=0.740 Sum_probs=65.5
Q ss_pred cEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEEEEeeccCCCCCceEEEeecCC-CCceeEeEEEEe
Q 008752 69 GVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHH-HSQFYLKTVTLE 147 (555)
Q Consensus 69 ~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~~-~~e~fl~~i~l~ 147 (555)
+|+|+|+ |+.++. ..+....++.|. +.+|...+|.++ ++.++|++++|+|++++ ..+|||++|+|+
T Consensus 20 ~V~l~L~-g~~~~s------~~~~~~~~~~~~----f~~g~~~~f~v~--~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~ 86 (105)
T smart00308 20 SVSLSLV-GAEGDG------KESKLDYLFKGI----FARGSTYEFTFD--VDEDFGELGAVKIKNEHRHPEWFLKSITVK 86 (105)
T ss_pred eEEEEEE-eCCCCC------cceeccccCCcc----ccCCceEEEEEe--cccCCCCcEEEEEEeCCCCCCeEEEEEEEE
Confidence 7999999 455441 123344555443 455777666655 78999999999999998 899999999998
Q ss_pred ecCCCceEEEEecccccC
Q 008752 148 DVPGHGRIHFVCNSWVYP 165 (555)
Q Consensus 148 ~~p~~~~i~FpCnsWV~~ 165 (555)
+.+.+..++|+||+||++
T Consensus 87 ~~~~~~~~~F~c~~Wl~~ 104 (105)
T smart00308 87 DLPTGGKYHFPCNSWVYP 104 (105)
T ss_pred ECCCCCEEEEEcCceeCC
Confidence 777788999999999986
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.22 E-value=4.3e-11 Score=104.99 Aligned_cols=94 Identities=26% Similarity=0.360 Sum_probs=74.4
Q ss_pred CCcEEEEEEeeecCCCcccccCccCcccccc-ccccccCCCCCceEEEEEEeeccCCCCCceEEEeecC---CCCceeEe
Q 008752 67 GKGVSMQLISAVNADPANELRGRLGKVAYLE-KWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQFYLK 142 (555)
Q Consensus 67 g~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~-~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~---~~~e~fl~ 142 (555)
..+|+|+|+ |+.+. +.+..|. .+... . |..++|.++. +.++|++.+|.|.+. +.+.|||+
T Consensus 16 ~~~V~i~l~-G~~g~---------s~~~~l~~~~~~~--~--g~~d~F~i~~--~~~lG~i~~i~i~~~~~~~~~~W~l~ 79 (113)
T PF01477_consen 16 DANVYITLY-GSKGK---------SGEIELLDPSGFN--F--GSTDTFTIET--PEDLGEIQKIRIWHDGSGPSPSWYLD 79 (113)
T ss_dssp SSEEEEEEE-ETTEE---------EEEEEEEEEEETS--T--TEEEEEEEEE--SSCGCSEEEEEEEEESSSSSSEEEEE
T ss_pred CCeEEEEEE-ECCCC---------cceEEEeeeeecc--c--CceEEeeeee--cccCCCCcEEEEEEccCCCccceEEE
Confidence 356999999 55432 2233333 33321 1 7788888774 789999999999988 78999999
Q ss_pred EEEEeecCCCceEEEEecccccCCCCCccceeee
Q 008752 143 TVTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFF 176 (555)
Q Consensus 143 ~i~l~~~p~~~~i~FpCnsWV~~~~~~~~~Riff 176 (555)
+|+|...+.+..+.|+||+||....+++..|+||
T Consensus 80 ~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 80 SVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred EEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 9999877778899999999999999999999997
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.13 E-value=4.2e-10 Score=100.04 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCcEEEEEEeeecCCCcccccCccCccccccc-cccccCCCCCceEEEEEEeeccCCCCCceEEEeecCCCC---ceeEe
Q 008752 67 GKGVSMQLISAVNADPANELRGRLGKVAYLEK-WITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHHHS---QFYLK 142 (555)
Q Consensus 67 g~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~-~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~~~~---e~fl~ 142 (555)
..+|+|+|+ ++.++ |....|.. +.. +.+|.+++|.|+ .+.++|++.+|.|++.+.. +|||+
T Consensus 18 ~~~v~i~l~-g~~g~---------s~~~~l~~~~~~---f~~g~~~~f~v~--~~~~lG~i~~v~l~~d~~g~~~~W~l~ 82 (116)
T cd00113 18 DSNISLALY-GENGN---------SSDIPILDGPGS---FERGSTDTFQID--LKLDIGDITKVYLRRDGSGLSDGWYCE 82 (116)
T ss_pred cCEEEEEEE-eCCCC---------cccEEccCCCCc---ccCCCceEEEEe--ccCCCcCeEEEEEEECCCCCCCCEEEe
Confidence 467999999 45433 23344432 321 566888888877 4779999999999988654 99999
Q ss_pred EEEEeecCCCceEEEEecccccCCCCCccceeee
Q 008752 143 TVTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFF 176 (555)
Q Consensus 143 ~i~l~~~p~~~~i~FpCnsWV~~~~~~~~~Riff 176 (555)
+|+|.....+..++|+||+||.....++..|+|.
T Consensus 83 ~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~~ 116 (116)
T cd00113 83 SITVQALGTKKVYTFPVNRWVLGGKWYTSVRSLK 116 (116)
T ss_pred EEEEEeCCCCCEEEEEeCCCcccCCCCCceeecC
Confidence 9999877767899999999999998888888874
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.12 E-value=2.7e-10 Score=101.95 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=64.9
Q ss_pred CcEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEEEEeeccCCCCCceEEEeecCC-CCceeEeEEEE
Q 008752 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHH-HSQFYLKTVTL 146 (555)
Q Consensus 68 ~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~~-~~e~fl~~i~l 146 (555)
.+|+|+|| |+.++ |.+..|.+ + |.+|++++|.|+ ++++|++-.|+|.|.. .+.|||++|+|
T Consensus 19 ~~V~i~L~-G~~g~---------S~~~~L~~---~--F~~G~~d~F~v~---~~dLG~l~~i~l~n~g~~~~Wf~~~V~V 80 (109)
T cd02899 19 GTIEITLL-GSSGR---------SNPKTLSQ---G--FYPGSLKRIRFR---AADVGDINAIILSNTALNDPWYCDYVRI 80 (109)
T ss_pred ceEEEEEE-ECCCC---------cCCEEccC---c--cCCCceEEEEEC---ccccCceEEEEEECCCCCCCceeeEEEE
Confidence 57999999 77654 23444542 2 667999999887 8999999999999874 77899999999
Q ss_pred eecCCCceEEEEecccccCC
Q 008752 147 EDVPGHGRIHFVCNSWVYPT 166 (555)
Q Consensus 147 ~~~p~~~~i~FpCnsWV~~~ 166 (555)
++ |++..++||||+|+...
T Consensus 81 ~~-~~g~~~~Fpc~rWla~~ 99 (109)
T cd02899 81 KS-EDGKVFAFNVKRWIGYP 99 (109)
T ss_pred EC-CCCCEEEEEcceeeCCc
Confidence 85 87788999999999754
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=98.95 E-value=3.3e-09 Score=95.34 Aligned_cols=87 Identities=14% Similarity=0.260 Sum_probs=68.7
Q ss_pred CcEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEEEEeeccCCCCCceEEEeecC---CCCceeEeEE
Q 008752 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQFYLKTV 144 (555)
Q Consensus 68 ~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~---~~~e~fl~~i 144 (555)
.+|+|+|+ |+.++ |.+..|.+...+ +.+|.+++|.|+ ++.++|++-.|.|++. ....|||++|
T Consensus 19 a~V~i~l~-G~~g~---------S~~~~L~~~~~~--FerG~~d~F~v~--~~~~lG~l~~i~i~~d~~g~~~~W~l~~V 84 (113)
T cd01753 19 DYIYLTLV-GTAGE---------SEKQLLDRPGYD--FERGAVDEYKVK--VPEDLGELLLVRLRKRKYLLFDAWFCNYI 84 (113)
T ss_pred cEEEEEEE-ECCCc---------ccCEEcCCCCCc--cCCCCeeEEEEe--cccCCCCcEEEEEEECCCCCCCCeeecEE
Confidence 46999999 66654 345666654433 667999999988 5789999999999976 3789999999
Q ss_pred EEeecCCCceEEEEecccccCCCCC
Q 008752 145 TLEDVPGHGRIHFVCNSWVYPTHRY 169 (555)
Q Consensus 145 ~l~~~p~~~~i~FpCnsWV~~~~~~ 169 (555)
+|++ +.+..++||||+|+.....+
T Consensus 85 ~V~~-~~~~~~~F~c~rWl~~~~~~ 108 (113)
T cd01753 85 TVTG-PGGDEYHFPCYRWIEGYGTL 108 (113)
T ss_pred EEEc-CCCCEEEEEhHHeECCCCEE
Confidence 9985 44688999999999886544
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=98.82 E-value=3.6e-08 Score=89.14 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=72.4
Q ss_pred CcEEEEEEeeecCCCcccccCccCcccccccc--ccccCCCCCceEEEEEEeeccCCCCCceEEEeecCC---CCceeEe
Q 008752 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKW--ITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHH---HSQFYLK 142 (555)
Q Consensus 68 ~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~--~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~~---~~e~fl~ 142 (555)
.+|+|+|+ |+.++ |....|+++ .+ .+.+|++++|.++. .++|++-.|.|++.. ...|||+
T Consensus 19 a~V~i~L~-G~~g~---------s~~~~L~~~~~~~--~FerGs~d~F~i~~---~~lG~l~~i~i~~d~~g~~~~W~~~ 83 (120)
T cd01756 19 ANVFITLY-GENGD---------TGKRKLKKSNNKN--KFERGQTDKFTVEA---VDLGKLKKIRIGHDNSGLGAGWFLD 83 (120)
T ss_pred cEEEEEEE-eCCCc---------cccEEccCCCcCC--cccCCCeEEEEEEe---cCCCCeEEEEEEECCCCCCCCcEEe
Confidence 57999999 66543 456677764 33 36679999999884 799999999999864 5789999
Q ss_pred EEEEeecCCCceEEEEecccccCCCCC-ccceeee
Q 008752 143 TVTLEDVPGHGRIHFVCNSWVYPTHRY-KYDRVFF 176 (555)
Q Consensus 143 ~i~l~~~p~~~~i~FpCnsWV~~~~~~-~~~Riff 176 (555)
.|+|.....+..++||||+|+...+.. ...|+|.
T Consensus 84 ~V~V~~~~~~~~~~F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 84 KVEIREPGTGDEYTFPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred EEEEEECCCceEEEEEeCCccCCCCCCCEEEEEEE
Confidence 999986666788999999999887543 2346654
No 12
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=98.72 E-value=9.6e-08 Score=86.39 Aligned_cols=95 Identities=17% Similarity=0.256 Sum_probs=70.5
Q ss_pred CcEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEEEEeeccCCCCCceEEEeecC---CCCceeEeEE
Q 008752 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQFYLKTV 144 (555)
Q Consensus 68 ~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~---~~~e~fl~~i 144 (555)
.+|+|+|+ |+.++ |.+..|.+... ..+.+|.+++|.|. .+.++|++-.|.|... ....|||++|
T Consensus 19 a~V~i~L~-G~~g~---------s~~~~L~~~~~-~~F~rG~~~~f~i~--~~~dlG~l~~i~l~hd~~g~~~~W~l~~V 85 (120)
T cd01752 19 AKVTITLY-GAEGE---------SEPHHLRDPEK-PIFERGSVDSFLLT--TPFPLGELQSIRLWHDNSGLSPSWYLSRV 85 (120)
T ss_pred cEEEEEEE-eCCCC---------cccEEcCCCCc-cceeCCCeeEEEec--CccCCCCccEEEEEECCCCCCCCeEEEEE
Confidence 47999999 67654 33456654322 13667999999888 4789999999999865 3779999999
Q ss_pred EEeecCCCceEEEEecccccCCCCC-ccceee
Q 008752 145 TLEDVPGHGRIHFVCNSWVYPTHRY-KYDRVF 175 (555)
Q Consensus 145 ~l~~~p~~~~i~FpCnsWV~~~~~~-~~~Rif 175 (555)
+|.+.-.+..+.||||+|+...+.. ...|+|
T Consensus 86 ~V~~~~t~~~~~F~~~rWl~~~~~d~~~~r~~ 117 (120)
T cd01752 86 IVRDLQTGKKWFFLCNDWLSVEEGDGTVERTF 117 (120)
T ss_pred EEEECCCCcEEEEEeCcEECCcCCCCEEEEEE
Confidence 9986555678999999999887543 224554
No 13
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=98.59 E-value=2.4e-07 Score=85.41 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=65.1
Q ss_pred CcEEEEEEeeecCCCcccccCccCccccc-cccc-----cccCCCCCceEEEEEEeeccCCCCCceEEEeecC---CCCc
Q 008752 68 KGVSMQLISAVNADPANELRGRLGKVAYL-EKWI-----TTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQ 138 (555)
Q Consensus 68 ~~v~l~LVS~~~~d~~t~~~gk~s~~~~l-~~~~-----~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~---~~~e 138 (555)
.+|+|+|+ |+.++ |.+..+ ++|. ....|.+|+++.|.|+ .+.++|++-.|+|+.. ....
T Consensus 19 anV~i~l~-G~~G~---------s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~--~~~~lG~l~~irI~HDn~G~~p~ 86 (129)
T cd01754 19 SRISLQIY-DADGP---------GLRIANLEAWGGLMGAGHDYFERGNLDRFSGR--GPCLPSPPCWMNLTSDGTGNHPG 86 (129)
T ss_pred ceEEEEEE-eCCCC---------cccEEcccccccccccccccccCCCccEEEEE--eccCCCCeEEEEEEECCCCCCCC
Confidence 47999999 66654 222333 2221 1113678999999998 4788999999999975 4779
Q ss_pred eeEeEEEEeecCC---CceEEEEecccccCCCC
Q 008752 139 FYLKTVTLEDVPG---HGRIHFVCNSWVYPTHR 168 (555)
Q Consensus 139 ~fl~~i~l~~~p~---~~~i~FpCnsWV~~~~~ 168 (555)
|||.+|+|.+... +..++||||+|+...+.
T Consensus 87 W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 87 WYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred cccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 9999999986543 34799999999977654
No 14
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=98.55 E-value=4.6e-07 Score=81.93 Aligned_cols=78 Identities=10% Similarity=0.102 Sum_probs=59.1
Q ss_pred CcEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEEEEeeccCCCCCceEEEeecC---CCCceeEeEE
Q 008752 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQFYLKTV 144 (555)
Q Consensus 68 ~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~---~~~e~fl~~i 144 (555)
.+|+|+|+ |+.++ |.+..|++. ...|.++ +.++|+.-.|+|+.. ....|||++|
T Consensus 20 anV~i~L~-G~~g~---------s~~~~L~~~----------~f~~~v~---~~~LG~L~~irIwHDnsG~~~~Wfl~~V 76 (114)
T cd01757 20 ANPWICVS-GELGE---------TPPLQIPKN----------SLEMTFD---CQNLGKLTTVQIGHDNSGLLAKWLVEYV 76 (114)
T ss_pred ceEEEEEE-EcCCC---------cCCEEecCC----------ceEEEEe---cCCcCCcEEEEEEECCCCCCCCeeeeEE
Confidence 46999999 77655 334555421 1134443 489999999999976 3789999999
Q ss_pred EEeecCCCceEEEEecccccCCCC
Q 008752 145 TLEDVPGHGRIHFVCNSWVYPTHR 168 (555)
Q Consensus 145 ~l~~~p~~~~i~FpCnsWV~~~~~ 168 (555)
+|++.+.+..++||||+|+...+.
T Consensus 77 ~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 77 MVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred EEEeCCCCCEEEEecCceecCCCC
Confidence 999878888999999999987654
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=89.86 E-value=2.7 Score=38.24 Aligned_cols=77 Identities=6% Similarity=0.039 Sum_probs=52.4
Q ss_pred CcEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEEEEeeccCCCCCceEEEeecCC----------CC
Q 008752 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHH----------HS 137 (555)
Q Consensus 68 ~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~n~~----------~~ 137 (555)
-.|.|.|. |+.++ |....|..- ...+|.+.+|-|. .+.++|..-.|.++-+. ..
T Consensus 19 ~~v~v~L~-G~~g~---------s~~~~l~~~----~~~~g~~~sfli~--t~~~lG~l~~v~~~~dn~~~~~~~~~~~p 82 (120)
T cd01755 19 GTFTVSLY-GTKGE---------TEQLPIVLG----ELKPNKTYSFLID--TEVDIGDLLKVKFKWENNVINSNSGETLP 82 (120)
T ss_pred ccEEEEEE-cCCCC---------cccEEEeCC----cccCCCEEEEEEE--cCCCccceEEEEEEEcCCCcccccccCCC
Confidence 36888888 67655 233444321 1345777777776 68999999999887431 45
Q ss_pred ceeEeEEEEeecCCCceEEEEecc
Q 008752 138 QFYLKTVTLEDVPGHGRIHFVCNS 161 (555)
Q Consensus 138 e~fl~~i~l~~~p~~~~i~FpCns 161 (555)
.||++.|+|+....+..+ .-|.+
T Consensus 83 ~~~~~~I~Vq~get~~~~-~FC~~ 105 (120)
T cd01755 83 KLGARKIRVKSGETQKKF-TFCSQ 105 (120)
T ss_pred cEEEEEEEEEECCCCCEE-EEECC
Confidence 899999999877664444 45766
No 16
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=61.46 E-value=73 Score=29.92 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=48.1
Q ss_pred cEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEEEEeeccCCCCCceEEEe-ecCC------------
Q 008752 69 GVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFII-RNHH------------ 135 (555)
Q Consensus 69 ~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V-~n~~------------ 135 (555)
.|.|.|. |+.++ |+...|.. .. ...+|.+.+|-|+ .+.++|+.-.|.+ ++.+
T Consensus 21 ~v~i~L~-G~~g~---------S~~~~l~~--~~-~~~~G~t~sfLi~--t~~dlG~L~~vk~~W~~n~~~~~sW~~~~~ 85 (137)
T cd01758 21 TFTISLY-GTLGE---------SENLPLTL--PE-GITGNKTNSFLIT--TEKDIGDLLMLKLKWEGSSLWSNSWWTVQT 85 (137)
T ss_pred eEEEEEE-cCCCc---------ccCEEEec--Cc-ccCCCCeEEEEEE--CCCCcCCEEEEEEEEeCCCCCChhhhcccc
Confidence 6888888 66554 33444432 11 1235777777776 6999999999999 4321
Q ss_pred ---------CCceeEeEEEEeecCCCceEEEEecc
Q 008752 136 ---------HSQFYLKTVTLEDVPGHGRIHFVCNS 161 (555)
Q Consensus 136 ---------~~e~fl~~i~l~~~p~~~~i~FpCns 161 (555)
....+++.|+|+....+..+ -.|.+
T Consensus 86 ~~~~~~~~~~p~l~~~~I~Vk~GEtq~~~-~FC~~ 119 (137)
T cd01758 86 IIPWSGWWRGSGLTIRKIRVKAGETQKKM-TFCAE 119 (137)
T ss_pred ccccccccCCCeEEEEEEEEEeCCCccEE-EECCC
Confidence 23455889999755444444 44655
No 17
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=38.36 E-value=79 Score=29.50 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=42.3
Q ss_pred CCCCceEEEEEEeeccCCCCCceEEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCC
Q 008752 105 PLTAVETLFTITFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPT 166 (555)
Q Consensus 105 ~~~~~~~~y~v~f~~~~dfG~pgai~V~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~ 166 (555)
+++...+.|+|. ..=++.+=-+.|+..-.+.|+.++|+|.+ ....++.|..|.||-..
T Consensus 60 FErCs~DtF~v~---G~C~~~IC~lyL~r~G~dGW~Pe~V~Iy~-~~~~~~~F~~~~~lp~~ 117 (125)
T PF06232_consen 60 FERCSTDTFQVT---GPCLYQICYLYLYRSGSDGWKPEWVQIYG-SGSKPVTFYFNTFLPNG 117 (125)
T ss_pred hhcCCcceeEee---cccCCcccEEEEEEccCCCCEeCeEEEEE-cCCCCeEEECCCcCCCC
Confidence 455777889887 23344555566666667899999999975 44578999999999764
No 18
>COG3101 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.99 E-value=15 Score=35.09 Aligned_cols=38 Identities=32% Similarity=0.619 Sum_probs=25.6
Q ss_pred CCCCeEEeCCCCCCCCcHHHHHHHHHHhcccchhHHHHHhhh
Q 008752 500 GAVSKVFTPAENGVEGSVWQLAKAYAAVNDSGYHQLVSHWCD 541 (555)
Q Consensus 500 ~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HQlisHllr 541 (555)
|.+.|||+|+|+..+...=-.|.-+.. +..|| |+||+-
T Consensus 27 G~DEPiYlPAde~vpyhri~FA~GfYa---SalHE-IaHWcv 64 (180)
T COG3101 27 GDDEPIYLPADEEVPYHRIVFAHGFYA---SALHE-ISHWCI 64 (180)
T ss_pred CCCcceeccCccCCCceeEEEechhHH---HHHHH-HHHHHH
Confidence 566799999997544444444555544 35799 899963
No 19
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=32.85 E-value=19 Score=42.81 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=35.4
Q ss_pred CCCCCceEEEeecC---CCCceeEeEEEEeecCCCceEEEEecccccCCCCC
Q 008752 121 EAMGVPGAFIIRNH---HHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHRY 169 (555)
Q Consensus 121 ~dfG~pgai~V~n~---~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~~ 169 (555)
.++|..--++|-.. ....||+++|.|..-=.|.++-|||++|.-+..+.
T Consensus 1020 kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~gedi 1071 (1295)
T KOG2080|consen 1020 KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNGEDI 1071 (1295)
T ss_pred cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCcccc
Confidence 68998777777543 35579999997743223679999999998765543
No 20
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=31.19 E-value=29 Score=33.70 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=33.3
Q ss_pred ChHhHHHHHHHHHhhhCCCCCCCcccCeEEeccccCCCCCCCCCCCCCcccCCCCCCCCCCCcCCC-CCC
Q 008752 187 PEPLRKYRREELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPRRGRT-GRK 255 (555)
Q Consensus 187 p~~L~~~Re~EL~~lRg~g~Gerk~~dRiYdydvYndlG~Pd~~~~~~RPvLGgs~~~PYPRR~RT-GR~ 255 (555)
++...+..--+|++-- ..=|++|.|||+.-|.+ +.|.-||-. ||||-- |++
T Consensus 90 ~a~~vK~~~i~iEe~h--------plGRL~DiDV~~~~g~~-----iSR~~lg~~-----~R~CliC~~~ 141 (170)
T PF03802_consen 90 DAEEVKRIMIEIEESH--------PLGRLFDIDVLDPDGKQ-----ISREDLGLP-----PRRCLICGRP 141 (170)
T ss_pred CHHHHHHHHHHHHccC--------cchheEEEeeecCCCCc-----cCHHHcCCC-----CCcccCCChh
Confidence 4444455555665543 23489999999654554 458888874 899986 554
No 21
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=30.73 E-value=4.2e+02 Score=24.15 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=46.2
Q ss_pred CCcEEEEEEeeecCCCcccccCccCccccccccccccCCCCCceEEEEEEeeccCCCCCceEEEee-cCC-----CCcee
Q 008752 67 GKGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIR-NHH-----HSQFY 140 (555)
Q Consensus 67 g~~v~l~LVS~~~~d~~t~~~gk~s~~~~l~~~~~~~~~~~~~~~~y~v~f~~~~dfG~pgai~V~-n~~-----~~e~f 140 (555)
...+++.|. |+.++ |+...+.. .. ..++.. |..-++.+.|.|+.-.|..+ +.+ ....+
T Consensus 16 ~g~~~vsL~-G~~g~---------s~~~~i~~--g~--l~pg~t--ys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~ 79 (113)
T cd01759 16 TGTILVSLY-GNKGN---------TRQYEIFK--GT--LKPGNT--YSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG 79 (113)
T ss_pred CceEEEEEE-cCCCC---------ccceEEEe--ee--ecCCCE--EEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE
Confidence 457888888 56544 22333321 11 223444 55445478899988777654 222 45788
Q ss_pred EeEEEEeecCCCceEEEEecc
Q 008752 141 LKTVTLEDVPGHGRIHFVCNS 161 (555)
Q Consensus 141 l~~i~l~~~p~~~~i~FpCns 161 (555)
+++|+|+...+ +...-.|.+
T Consensus 80 ~~~I~Vq~Ge~-~~~~~FC~~ 99 (113)
T cd01759 80 AEKITVQSGKD-GKVFNFCSS 99 (113)
T ss_pred EEEEEEEeCCC-ccEEEECCC
Confidence 99999985554 445555766
No 22
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=26.96 E-value=27 Score=33.88 Aligned_cols=37 Identities=27% Similarity=0.636 Sum_probs=22.8
Q ss_pred CCCCeEEeCCCCCCCCcHHHHHHHHHHhcccchhHHHHHhh
Q 008752 500 GAVSKVFTPAENGVEGSVWQLAKAYAAVNDSGYHQLVSHWC 540 (555)
Q Consensus 500 ~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HQlisHll 540 (555)
|.+-|+|.|+++......=..|-=+++ +..|| |+||.
T Consensus 17 G~dEP~YlPa~~~~~~~rI~Fahgf~a---SALHE-IaHWc 53 (164)
T PF04315_consen 17 GDDEPIYLPADDECPYHRIIFAHGFFA---SALHE-IAHWC 53 (164)
T ss_pred CCCCccccCCCCCCCceeEEeecchHH---HHHHH-HHHHH
Confidence 567799999985322222222333333 46899 99996
Done!