Query 008754
Match_columns 554
No_of_seqs 261 out of 1707
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 16:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 3.6E-53 7.8E-58 430.9 35.8 382 161-548 44-449 (449)
2 PTZ00206 amino acid transporte 100.0 2.7E-52 5.8E-57 444.5 36.1 387 162-549 58-465 (467)
3 KOG1303 Amino acid transporter 100.0 5.3E-52 1.1E-56 430.2 33.3 387 161-550 35-436 (437)
4 PLN03074 auxin influx permease 100.0 7.9E-46 1.7E-50 393.0 32.5 382 161-554 43-457 (473)
5 PF01490 Aa_trans: Transmembra 100.0 5E-49 1.1E-53 416.2 -2.1 380 162-545 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 7.1E-41 1.5E-45 345.6 23.5 387 161-551 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 5.1E-41 1.1E-45 321.6 10.4 384 161-553 114-519 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.8E-30 3.8E-35 272.0 33.5 381 161-545 6-412 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 8.6E-24 1.9E-28 220.1 34.2 366 163-538 2-392 (394)
10 TIGR00837 araaP aromatic amino 99.9 5.8E-24 1.3E-28 222.7 30.0 339 169-516 2-359 (381)
11 PRK10483 tryptophan permease; 99.9 6.9E-23 1.5E-27 211.4 35.0 370 161-541 8-403 (414)
12 PRK09664 tryptophan permease T 99.9 2.8E-22 6.2E-27 206.6 35.4 370 161-541 6-404 (415)
13 PRK15132 tyrosine transporter 99.9 4.5E-22 9.7E-27 206.3 33.9 367 165-541 4-392 (403)
14 KOG1287 Amino acid transporter 99.9 9.9E-23 2.2E-27 209.9 19.6 350 159-523 9-393 (479)
15 PRK13629 threonine/serine tran 99.8 3E-18 6.4E-23 176.9 33.2 370 167-543 22-441 (443)
16 TIGR00814 stp serine transport 99.8 1.5E-18 3.2E-23 180.5 28.7 361 167-534 6-396 (397)
17 PRK10655 potE putrescine trans 99.8 1.5E-16 3.2E-21 169.9 35.6 234 161-403 5-246 (438)
18 PRK10435 cadB lysine/cadaverin 99.8 3.6E-16 7.8E-21 166.5 35.2 236 161-405 4-246 (435)
19 PRK10249 phenylalanine transpo 99.8 1.3E-15 2.9E-20 163.1 36.6 234 161-405 20-268 (458)
20 PRK11021 putative transporter; 99.8 2.6E-15 5.6E-20 158.8 37.8 229 164-401 1-232 (410)
21 PRK15049 L-asparagine permease 99.8 1.8E-15 3.9E-20 163.5 36.3 344 161-516 27-406 (499)
22 TIGR00930 2a30 K-Cl cotranspor 99.8 7.4E-16 1.6E-20 175.7 34.7 241 161-402 75-336 (953)
23 PRK10644 arginine:agmatin anti 99.8 2E-15 4.3E-20 161.4 35.8 235 161-405 7-250 (445)
24 PRK10746 putative transport pr 99.8 4.1E-15 8.8E-20 159.4 36.4 234 161-405 9-259 (461)
25 TIGR01773 GABAperm gamma-amino 99.8 3.6E-15 7.8E-20 159.8 35.4 234 161-405 11-260 (452)
26 PRK11049 D-alanine/D-serine/gl 99.8 3.3E-15 7.2E-20 160.6 35.1 233 161-404 19-269 (469)
27 PRK11387 S-methylmethionine tr 99.8 3.7E-15 8.1E-20 160.4 35.3 235 161-406 13-266 (471)
28 TIGR00909 2A0306 amino acid tr 99.7 1.5E-15 3.2E-20 161.7 31.1 241 161-403 2-252 (429)
29 PRK10238 aromatic amino acid t 99.7 6.4E-15 1.4E-19 157.7 35.3 229 161-400 11-254 (456)
30 TIGR03810 arg_ornith_anti argi 99.7 6.5E-15 1.4E-19 158.4 34.9 240 162-406 1-254 (468)
31 COG1113 AnsP Gamma-aminobutyra 99.7 1.1E-15 2.4E-20 155.5 26.9 339 161-515 12-388 (462)
32 TIGR00912 2A0309 spore germina 99.7 5.1E-15 1.1E-19 153.8 31.2 333 163-515 2-353 (359)
33 PRK10836 lysine transporter; P 99.7 2E-14 4.3E-19 155.4 36.9 235 161-406 14-265 (489)
34 TIGR00905 2A0302 transporter, 99.7 1.8E-14 3.9E-19 155.2 36.0 240 161-405 6-257 (473)
35 PRK10580 proY putative proline 99.7 4.6E-14 1E-18 151.4 37.3 231 161-402 8-255 (457)
36 TIGR00913 2A0310 amino acid pe 99.7 3.6E-14 7.7E-19 153.2 36.0 229 161-400 1-251 (478)
37 TIGR00911 2A0308 L-type amino 99.7 2.2E-14 4.8E-19 155.7 33.4 239 161-405 41-294 (501)
38 TIGR00906 2A0303 cationic amin 99.7 2.4E-14 5.3E-19 156.3 33.4 240 161-405 27-290 (557)
39 PRK10197 gamma-aminobutyrate t 99.7 5.9E-14 1.3E-18 149.9 33.1 222 172-404 2-239 (446)
40 TIGR00908 2A0305 ethanolamine 99.7 1.2E-13 2.6E-18 147.6 35.3 229 161-400 6-245 (442)
41 PRK11357 frlA putative fructos 99.7 1.1E-13 2.3E-18 148.2 33.6 231 161-403 7-252 (445)
42 PF13520 AA_permease_2: Amino 99.6 1.1E-12 2.4E-17 139.6 34.3 237 164-407 1-247 (426)
43 COG0833 LysP Amino acid transp 99.6 2.6E-12 5.6E-17 133.8 29.4 345 160-515 42-427 (541)
44 TIGR03428 ureacarb_perm permea 99.6 4.3E-11 9.4E-16 129.0 38.3 245 161-406 12-273 (475)
45 COG0531 PotE Amino acid transp 99.5 2.6E-11 5.7E-16 130.4 33.3 241 161-407 11-262 (466)
46 TIGR00907 2A0304 amino acid pe 99.5 1E-10 2.2E-15 126.5 33.8 241 161-404 11-275 (482)
47 TIGR00910 2A0307_GadC glutamat 99.5 2.2E-10 4.7E-15 124.2 33.8 230 161-400 3-248 (507)
48 PRK15238 inner membrane transp 99.4 5.1E-10 1.1E-14 121.4 36.4 240 161-402 6-267 (496)
49 PF03845 Spore_permease: Spore 99.4 8E-11 1.7E-15 120.3 27.0 282 163-460 1-298 (320)
50 KOG1286 Amino acid transporter 99.4 2.3E-11 4.9E-16 130.9 21.7 350 161-515 29-422 (554)
51 TIGR03813 put_Glu_GABA_T putat 99.4 2.5E-09 5.5E-14 115.3 35.2 235 163-406 2-254 (474)
52 PF00324 AA_permease: Amino ac 99.2 1.8E-10 3.8E-15 124.5 13.8 232 172-409 5-263 (478)
53 KOG3832 Predicted amino acid t 99.1 1.8E-09 3.8E-14 98.0 12.4 214 163-377 11-303 (319)
54 KOG1289 Amino acid transporter 98.9 1.9E-06 4.2E-11 90.4 28.4 244 161-408 47-314 (550)
55 COG1457 CodB Purine-cytosine p 98.8 2E-05 4.3E-10 82.3 30.4 253 230-502 86-348 (442)
56 COG3949 Uncharacterized membra 98.7 1.4E-05 3E-10 78.8 27.4 132 167-312 6-142 (349)
57 TIGR02358 thia_cytX probable h 98.7 5.1E-05 1.1E-09 79.5 32.9 257 225-502 58-320 (386)
58 KOG2082 K+/Cl- cotransporter K 98.7 7.2E-06 1.6E-10 87.7 25.8 161 164-326 115-287 (1075)
59 TIGR00796 livcs branched-chain 98.7 3.3E-05 7.1E-10 80.0 30.3 216 171-403 2-242 (378)
60 TIGR00800 ncs1 NCS1 nucleoside 98.7 3.5E-05 7.5E-10 82.4 31.3 296 161-458 11-331 (442)
61 PRK11375 allantoin permease; P 98.6 0.00035 7.5E-09 75.4 34.6 299 196-503 62-390 (484)
62 PRK12488 acetate permease; Pro 98.5 0.00084 1.8E-08 73.7 37.1 147 161-320 66-215 (549)
63 TIGR02119 panF sodium/pantothe 98.5 0.0018 3.9E-08 69.9 37.0 232 161-404 39-293 (471)
64 TIGR00813 sss transporter, SSS 98.4 0.00069 1.5E-08 71.7 32.6 148 161-320 2-151 (407)
65 PRK09442 panF sodium/panthothe 98.4 0.0044 9.6E-08 67.1 38.3 231 161-403 40-293 (483)
66 PF00474 SSF: Sodium:solute sy 98.4 0.00022 4.7E-09 75.5 27.4 147 161-319 5-154 (406)
67 PRK11017 codB cytosine permeas 98.4 0.0013 2.7E-08 69.5 32.3 172 225-408 71-245 (404)
68 COG1914 MntH Mn2+ and Fe2+ tra 98.3 0.0036 7.8E-08 65.5 32.3 358 163-542 16-409 (416)
69 PRK09395 actP acetate permease 98.3 0.011 2.3E-07 65.2 37.5 146 161-318 68-215 (551)
70 TIGR02711 symport_actP cation/ 98.3 0.0068 1.5E-07 66.6 35.7 146 161-319 66-214 (549)
71 COG0591 PutP Na+/proline sympo 98.2 0.017 3.6E-07 62.6 36.9 142 161-314 37-184 (493)
72 TIGR03648 Na_symport_lg probab 98.1 0.023 4.9E-07 62.7 36.8 146 161-318 31-178 (552)
73 PF02133 Transp_cyt_pur: Perme 98.0 8.1E-05 1.8E-09 79.6 14.3 291 161-455 6-316 (440)
74 COG1953 FUI1 Cytosine/uracil/t 98.0 0.027 5.8E-07 59.4 31.2 353 161-517 38-416 (497)
75 PRK00701 manganese transport p 97.9 0.059 1.3E-06 57.4 35.9 92 177-270 36-139 (439)
76 COG0733 Na+-dependent transpor 97.8 0.053 1.2E-06 56.5 29.7 292 161-457 6-338 (439)
77 KOG1288 Amino acid transporter 97.8 0.0016 3.5E-08 69.8 18.1 56 348-403 295-351 (945)
78 TIGR02121 Na_Pro_sym sodium/pr 97.7 0.12 2.5E-06 56.2 38.4 149 161-320 35-191 (487)
79 PRK15419 proline:sodium sympor 97.7 0.13 2.8E-06 56.0 38.7 147 161-319 39-194 (502)
80 TIGR00835 agcS amino acid carr 97.7 0.1 2.2E-06 54.9 29.9 146 161-318 44-198 (425)
81 PRK10484 putative transporter; 97.7 0.14 3.1E-06 56.0 35.6 157 161-320 37-196 (523)
82 PF00209 SNF: Sodium:neurotran 97.5 0.14 3.1E-06 56.0 29.3 290 162-458 3-382 (523)
83 PF01566 Nramp: Natural resist 97.3 0.22 4.7E-06 51.7 27.1 78 225-313 42-121 (358)
84 PF02554 CstA: Carbon starvati 97.3 0.05 1.1E-06 55.3 20.7 106 162-268 50-157 (376)
85 PHA02764 hypothetical protein; 96.8 0.58 1.2E-05 46.5 22.2 90 161-254 11-106 (399)
86 COG4147 DhlC Predicted symport 96.7 1.1 2.4E-05 47.1 26.8 178 215-404 95-294 (529)
87 PF05525 Branch_AA_trans: Bran 96.5 1.5 3.3E-05 46.2 27.7 71 165-240 4-78 (427)
88 KOG2083 Na+/K+ symporter [Inor 96.4 0.013 2.7E-07 62.5 9.0 224 164-399 30-276 (643)
89 TIGR01197 nramp NRAMP (natural 96.3 1.8 3.9E-05 45.4 32.4 94 173-270 13-109 (390)
90 COG1966 CstA Carbon starvation 96.1 0.34 7.4E-06 51.7 17.4 103 164-267 52-156 (575)
91 PRK15015 carbon starvation pro 96.0 0.16 3.4E-06 55.4 14.7 101 165-266 84-186 (701)
92 PF01235 Na_Ala_symp: Sodium:a 95.6 3.8 8.3E-05 43.1 27.3 86 161-246 16-110 (416)
93 TIGR00796 livcs branched-chain 94.4 0.51 1.1E-05 49.2 12.2 79 223-312 253-331 (378)
94 KOG2466 Uridine permease/thiam 94.1 9.4 0.0002 40.5 20.6 286 161-456 53-377 (572)
95 PF05525 Branch_AA_trans: Bran 93.4 0.57 1.2E-05 49.4 10.4 77 225-312 261-337 (427)
96 KOG1291 Mn2+ and Fe2+ transpor 93.3 13 0.00027 39.3 23.5 61 450-511 345-407 (503)
97 PRK15433 branched-chain amino 92.3 18 0.00038 38.5 25.8 65 165-235 9-78 (439)
98 COG1114 BrnQ Branched-chain am 92.1 1.8 3.9E-05 44.9 11.6 79 223-312 261-339 (431)
99 PLN00151 potassium transporter 91.5 27 0.0006 39.7 20.7 22 351-375 348-369 (852)
100 KOG2349 Na+:iodide/myo-inosito 90.7 1.9 4E-05 47.1 10.5 228 161-404 44-297 (585)
101 PF02028 BCCT: BCCT family tra 89.0 37 0.0008 36.7 31.5 25 161-185 72-96 (485)
102 PRK15433 branched-chain amino 88.5 4.4 9.5E-05 42.9 11.1 70 228-309 268-337 (439)
103 COG1115 AlsT Na+/alanine sympo 87.4 43 0.00092 35.5 28.2 144 161-316 60-213 (452)
104 KOG1289 Amino acid transporter 85.6 13 0.00029 40.0 12.8 53 224-276 324-376 (550)
105 PF10446 DUF2457: Protein of u 85.1 0.57 1.2E-05 48.4 2.3 6 113-118 186-191 (458)
106 COG4145 PanF Na+/panthothenate 80.6 75 0.0016 32.9 29.6 110 161-271 38-153 (473)
107 KOG3660 Sodium-neurotransmitte 74.0 1.6E+02 0.0034 33.1 26.7 67 163-230 37-109 (629)
108 KOG0943 Predicted ubiquitin-pr 74.0 1.8 4E-05 49.7 1.9 21 162-182 1941-1961(3015)
109 PHA02664 hypothetical protein; 73.0 2.8 6E-05 41.3 2.7 9 5-13 424-432 (534)
110 KOG3130 Uncharacterized conser 69.2 3 6.5E-05 42.4 2.0 10 163-172 469-478 (514)
111 cd08762 Cyt_b561_CYBASC3 Verte 69.1 96 0.0021 28.6 11.6 116 324-445 14-133 (179)
112 KOG1305 Amino acid transporter 66.2 1.7E+02 0.0037 30.9 14.5 240 301-542 147-406 (411)
113 KOG4812 Golgi-associated prote 66.2 11 0.00023 36.1 4.8 30 522-551 222-253 (262)
114 TIGR00909 2A0306 amino acid tr 64.9 1.9E+02 0.0041 30.5 18.4 47 226-272 265-311 (429)
115 KOG3659 Sodium-neurotransmitte 63.7 2.4E+02 0.0051 31.2 27.3 87 161-249 79-171 (629)
116 PRK09950 putative transporter; 63.7 2.3E+02 0.0049 30.9 30.5 38 220-257 162-203 (506)
117 PHA02608 67 prohead core prote 63.4 2.8 6E-05 32.3 0.4 12 8-19 41-52 (80)
118 PF02724 CDC45: CDC45-like pro 61.5 4.7 0.0001 45.0 1.9 15 158-172 306-320 (622)
119 PLN02680 carbon-monoxide oxyge 61.3 1.2E+02 0.0027 29.2 11.1 97 343-445 46-142 (232)
120 KOG1277 Endosomal membrane pro 60.4 2E+02 0.0044 30.5 13.0 9 173-181 294-302 (593)
121 KOG4032 Uncharacterized conser 60.2 6.8 0.00015 35.8 2.3 10 56-65 174-183 (184)
122 PRK09928 choline transport pro 59.8 3E+02 0.0065 31.1 18.3 30 425-454 198-227 (679)
123 PRK09928 choline transport pro 59.7 3E+02 0.0066 31.1 31.5 24 161-184 90-113 (679)
124 PRK11281 hypothetical protein; 59.7 2.5E+02 0.0054 33.9 15.5 29 379-407 542-570 (1113)
125 PRK10263 DNA translocase FtsK; 58.1 3E+02 0.0065 33.6 15.5 22 383-404 25-46 (1355)
126 KOG1287 Amino acid transporter 58.1 1E+02 0.0022 33.2 10.9 103 228-331 276-383 (479)
127 KOG1824 TATA-binding protein-i 56.3 6.3 0.00014 44.8 1.8 20 253-272 592-611 (1233)
128 PF12794 MscS_TM: Mechanosensi 54.6 1.3E+02 0.0029 30.8 11.1 39 379-417 46-84 (340)
129 COG0814 SdaC Amino acid permea 53.4 3E+02 0.0065 29.1 19.7 165 351-515 194-375 (415)
130 PLN03223 Polycystin cation cha 53.3 4.9E+02 0.011 31.9 15.9 23 241-263 1216-1238(1634)
131 TIGR00907 2A0304 amino acid pe 50.2 3.5E+02 0.0076 29.0 16.7 48 225-272 289-337 (482)
132 PF02724 CDC45: CDC45-like pro 47.4 13 0.00029 41.5 2.6 9 379-387 467-475 (622)
133 PTZ00415 transmission-blocking 46.7 8.4 0.00018 46.5 0.9 16 362-377 643-658 (2849)
134 KOG0772 Uncharacterized conser 45.3 16 0.00035 38.7 2.6 12 50-61 153-164 (641)
135 KOG0262 RNA polymerase I, larg 44.6 15 0.00032 43.1 2.4 10 258-267 1557-1566(1640)
136 PF05805 L6_membrane: L6 membr 43.9 65 0.0014 30.1 6.0 62 489-550 46-117 (195)
137 TIGR01299 synapt_SV2 synaptic 43.2 5.3E+02 0.012 29.7 14.6 10 184-193 189-198 (742)
138 KOG2652 RNA polymerase II tran 41.4 14 0.00031 37.1 1.5 8 59-66 320-327 (348)
139 KOG2023 Nuclear transport rece 41.2 15 0.00033 40.3 1.7 23 347-369 644-666 (885)
140 PLN02810 carbon-monoxide oxyge 40.5 3.4E+02 0.0075 26.1 13.4 107 333-445 34-142 (231)
141 PF05781 MRVI1: MRVI1 protein; 40.3 1.5E+02 0.0033 32.1 8.8 64 163-235 458-524 (538)
142 PF02468 PsbN: Photosystem II 40.1 26 0.00055 24.0 2.0 27 382-408 4-30 (43)
143 PRK13183 psbN photosystem II r 39.6 25 0.00054 24.4 2.0 28 381-408 6-33 (46)
144 PF05297 Herpes_LMP1: Herpesvi 39.1 10 0.00022 37.1 0.0 10 494-503 133-142 (381)
145 PF05756 S-antigen: S-antigen 38.9 18 0.00039 27.9 1.3 6 28-33 69-74 (94)
146 COG3817 Predicted membrane pro 38.3 3.9E+02 0.0085 26.1 11.9 32 521-552 166-197 (313)
147 PRK10929 putative mechanosensi 37.6 6.1E+02 0.013 30.6 14.1 28 379-406 520-547 (1109)
148 PF08019 DUF1705: Domain of un 36.1 3.2E+02 0.0068 24.4 9.9 36 485-520 56-93 (156)
149 PRK09598 lipid A phosphoethano 35.6 2.1E+02 0.0045 31.4 9.4 28 497-524 125-152 (522)
150 PF14256 YwiC: YwiC-like prote 34.9 3E+02 0.0066 23.8 8.9 37 484-522 23-59 (129)
151 TIGR00842 bcct choline/carniti 34.8 6.1E+02 0.013 27.3 29.4 35 220-254 115-153 (453)
152 CHL00020 psbN photosystem II p 34.7 25 0.00055 24.0 1.4 27 382-408 4-30 (43)
153 PF05297 Herpes_LMP1: Herpesvi 32.4 15 0.00032 36.0 0.0 18 311-328 77-94 (381)
154 KOG0468 U5 snRNP-specific prot 30.8 28 0.0006 38.5 1.7 12 225-236 333-344 (971)
155 KOG3130 Uncharacterized conser 29.9 32 0.0007 35.3 1.8 6 74-79 356-361 (514)
156 KOG4363 Putative growth respon 29.7 35 0.00075 32.9 1.9 6 14-19 46-51 (270)
157 KOG2466 Uridine permease/thiam 29.4 74 0.0016 34.0 4.4 154 234-399 338-514 (572)
158 TIGR00906 2A0303 cationic amin 29.2 8.1E+02 0.018 27.0 19.5 46 226-271 300-345 (557)
159 KOG4112 Signal peptidase subun 28.8 1.4E+02 0.0031 24.1 4.9 45 468-512 31-75 (101)
160 COG2194 Predicted membrane-ass 28.4 8.4E+02 0.018 27.0 15.2 20 497-516 121-140 (555)
161 PF03348 Serinc: Serine incorp 27.9 6.2E+02 0.013 27.0 11.1 42 466-507 112-158 (429)
162 PF13491 DUF4117: Domain of un 27.5 4.5E+02 0.0097 23.5 12.5 27 377-403 1-27 (171)
163 KOG0526 Nucleosome-binding fac 26.9 51 0.0011 35.3 2.8 12 161-172 537-548 (615)
164 KOG3241 Uncharacterized conser 26.7 48 0.001 30.1 2.2 6 35-40 197-202 (227)
165 TIGR00945 tatC Twin arginine t 26.6 5.6E+02 0.012 24.3 12.9 36 423-458 57-92 (215)
166 PRK12438 hypothetical protein; 26.2 1.1E+03 0.024 28.0 13.4 26 465-490 212-237 (991)
167 PF07954 DUF1689: Protein of u 25.8 1.9E+02 0.0041 26.0 5.8 56 492-550 34-93 (152)
168 PF02665 Nitrate_red_gam: Nitr 25.7 5.4E+02 0.012 24.6 9.4 59 489-547 87-145 (222)
169 PF08595 RXT2_N: RXT2-like, N- 25.6 32 0.00068 30.8 0.9 8 83-90 105-112 (149)
170 KOG2141 Protein involved in hi 25.6 51 0.0011 36.7 2.5 13 259-271 442-454 (822)
171 TIGR03750 conj_TIGR03750 conju 25.1 4.2E+02 0.0092 22.4 7.6 63 161-223 15-79 (111)
172 TIGR00927 2A1904 K+-dependent 24.9 40 0.00086 39.0 1.7 20 380-399 1064-1083(1096)
173 CHL00182 tatC Sec-independent 24.3 6.7E+02 0.015 24.4 12.4 20 497-516 173-192 (249)
174 PRK04949 putative sulfate tran 24.3 6.8E+02 0.015 24.5 14.8 48 370-419 18-65 (251)
175 PTZ00415 transmission-blocking 24.3 47 0.001 40.7 2.1 10 9-18 150-159 (2849)
176 KOG4553 Uncharacterized conser 24.1 44 0.00096 38.8 1.8 16 3-18 1302-1317(1398)
177 COG5129 MAK16 Nuclear protein 24.0 27 0.00057 32.9 0.1 57 1-58 193-273 (303)
178 PRK10921 twin-arginine protein 23.8 7E+02 0.015 24.5 11.4 32 426-457 71-102 (258)
179 PRK11598 putative metal depend 23.8 4.5E+02 0.0098 29.0 9.5 19 497-515 125-143 (545)
180 PF05642 Sporozoite_P67: Sporo 22.8 45 0.00098 35.9 1.5 45 8-52 95-140 (727)
181 KOG1999 RNA polymerase II tran 22.3 55 0.0012 37.7 2.1 53 3-55 27-99 (1024)
182 COG3125 CyoD Heme/copper-type 22.3 4.8E+02 0.01 22.0 9.0 46 496-542 53-98 (111)
183 PHA02680 ORF090 IMV phosphoryl 21.7 3E+02 0.0066 22.0 5.4 38 368-407 32-71 (91)
184 PRK11387 S-methylmethionine tr 21.6 9.1E+02 0.02 25.7 11.4 47 225-271 275-321 (471)
185 PF00902 TatC: Sec-independent 21.4 6.9E+02 0.015 23.5 11.8 94 423-516 61-176 (215)
186 KOG4364 Chromatin assembly fac 21.1 55 0.0012 36.0 1.7 6 12-17 521-526 (811)
187 KOG3533 Inositol 1,4,5-trispho 21.0 4E+02 0.0087 32.5 8.3 35 374-408 2413-2447(2706)
188 PTZ00482 membrane-attack compl 20.9 90 0.002 36.0 3.4 15 55-69 147-161 (844)
189 PHA03132 thymidine kinase; Pro 20.5 6.8E+02 0.015 27.8 9.9 14 60-73 77-90 (580)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-53 Score=430.88 Aligned_cols=382 Identities=25% Similarity=0.388 Sum_probs=337.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-----CCCCCChHHHHH--
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS-----EPGLETYPDIGQ-- 232 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~-----~~~~~~y~~l~~-- 232 (554)
++..|..++..|+++.++|+|+|++|+||+++||+ |.+..++.++++.||++.|++|... .....+|++.++
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 56789999999999999999999999999999999 9999999999999999999998632 223467777754
Q ss_pred --------HHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccC
Q 008754 233 --------AAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRD 304 (554)
Q Consensus 233 --------~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~ 304 (554)
+.+|+++|+++++.+++.++|.|++|++++++++.++++..... ..+...+.++..+..++++++|+
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~-----~~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPG-----VLSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCC-----CccHHHHHHHHHHHHHHHHHHHh
Confidence 45589999999999999999999999999999999999732211 11245677788888999999999
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHhhhcccccccCCCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCCch---h
Q 008754 305 LTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFP---K 381 (554)
Q Consensus 305 l~~l~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~---~ 381 (554)
++.++.+|.++.++.++.+++++++.+.+.++.+..+...++.+++.++|+.+|||.|+.++.++.++||+|++++ +
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g 278 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG 278 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence 9999999999999888877777777666665555555566799999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCC--C
Q 008754 382 VLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNH--L 459 (554)
Q Consensus 382 ~~~~s~~~~~~lY~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~--~ 459 (554)
++..++.+++++|..+|++||+.||+++++.+++|+|+ .++.....++..+.++.+||++++|..+.+|+.+.++. .
T Consensus 279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~ 357 (449)
T KOG1304|consen 279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN 357 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc
Confidence 99999999999999999999999999999999999999 67777888999999999999999999999998655432 2
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCcc---chHHHHHHHHHHHHHHHH
Q 008754 460 KSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKA---TRLQVALCVIIIVAGVVS 536 (554)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~---~~~~~~~~~~ii~~g~~~ 536 (554)
+.++..+.+|..+++.++.+|..+|+++.+++++|++++..+++++|++++++.++++. .+|+.+.+.+++++|++.
T Consensus 358 ~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~ 437 (449)
T KOG1304|consen 358 RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFG 437 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999987654 468889999999999999
Q ss_pred hHHhHHHHHHHH
Q 008754 537 SAIGSYSAILKI 548 (554)
Q Consensus 537 ~v~gty~si~~i 548 (554)
++.|||.++.++
T Consensus 438 ~v~Gty~si~~i 449 (449)
T KOG1304|consen 438 FVYGTYTSIKEI 449 (449)
T ss_pred HHHHHhhhhhcC
Confidence 999999999764
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.7e-52 Score=444.49 Aligned_cols=387 Identities=21% Similarity=0.310 Sum_probs=319.9
Q ss_pred CCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhH
Q 008754 162 RQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (554)
Q Consensus 162 ~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~ 240 (554)
+..+..++++|++|+++|+|+|++|+||+++||+ |+++++++++++.|+.++|.++.+ +.+..+|+|+++++|||+++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~-~~~~~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAAD-KTNIRTYEGVARVLLGPWGS 136 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHhCHHHH
Confidence 4678899999999999999999999999999999 999999999999999999999984 46678999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccC-CCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLS-FGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 241 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
+++++++++.++|+|++|+++.+|.++.+++..... .-......+.++.++.+++++|++++|+++.++++|.++++++
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i 216 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFM 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988653211 0000011223344556678899999999999999999999887
Q ss_pred HHHHHHHHhhhcccccc--cC-----CCC----Cccc-cCchhHHHHHHHHhhccccchhhHHhhccCCC--CchhHHHH
Q 008754 320 ILVVLCLFWVGLVDQVN--IH-----SKG----TPLN-LATLPVAIGLYGYCYSGHAVFPNIYTSMAQPN--QFPKVLIT 385 (554)
Q Consensus 320 i~~~~~~~~~~~~~~~~--~~-----~~~----~~~~-~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~--~~~~~~~~ 385 (554)
++.++++++....++.. .+ ..+ ..++ ..+.+.++++++|||.||.+++++++|||+|+ |+.+++..
T Consensus 217 ~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~ 296 (467)
T PTZ00206 217 VYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTI 296 (467)
T ss_pred HHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHH
Confidence 77666665443322110 00 000 0112 23578899999999999999999999999865 68899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhhcCC-CchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCC-CCcch
Q 008754 386 CFLICTAMYAGVAYMGYTMFGESTLSQFTLNM-PQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNH-LKSHI 463 (554)
Q Consensus 386 s~~~~~~lY~~vg~~gy~~fG~~~~~~i~~n~-p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~-~~~~~ 463 (554)
++.+++++|.++|++||+.||++++++++.|+ |.++....++++..++.++.+||++++|+|+.+++.+..+. +...+
T Consensus 297 s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~ 376 (467)
T PTZ00206 297 AMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFW 376 (467)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchh
Confidence 99999999999999999999999999999999 56666677888888888999999999999999998874432 22335
Q ss_pred hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHH---hcCccchHHHHHHHHHHHHHHHHhHHh
Q 008754 464 YAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSI---LRGKATRLQVALCVIIIVAGVVSSAIG 540 (554)
Q Consensus 464 ~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~---~~~~~~~~~~~~~~~ii~~g~~~~v~g 540 (554)
++...+..+++.++++|+.+|+++.+++++|++++..++|++|+++|++. ++++..+++.+.+++++++|++..+.|
T Consensus 377 ~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~G 456 (467)
T PTZ00206 377 KHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFG 456 (467)
T ss_pred hHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEec
Confidence 55566667777889999999999999999999999999999999999983 333344556688999999999999999
Q ss_pred HHHHHHHHH
Q 008754 541 SYSAILKIV 549 (554)
Q Consensus 541 ty~si~~ii 549 (554)
||+++++.+
T Consensus 457 t~~si~~~~ 465 (467)
T PTZ00206 457 TGATIWGVT 465 (467)
T ss_pred chhHhhHHh
Confidence 999999875
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-52 Score=430.16 Aligned_cols=387 Identities=36% Similarity=0.629 Sum_probs=340.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC-----hHHHHHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLET-----YPDIGQAA 234 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~-----y~~l~~~~ 234 (554)
+|+.|++++.++.+|.++|.|+|++|||++++||+ |++++++++++++||+.+|.+|.+.++...+ |+|+++++
T Consensus 35 ~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~a 114 (437)
T KOG1303|consen 35 SRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAA 114 (437)
T ss_pred CCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHH
Confidence 67799999999999999999999999999999999 8999999999999999999999977766555 99999999
Q ss_pred hchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHH
Q 008754 235 FGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (554)
Q Consensus 235 ~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~ 314 (554)
||+++++++.+++.+.++++|++|++..++++..+++....+.. ..+ ...+.+++.++++|++++||++.++++|.+
T Consensus 115 fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S~~ 191 (437)
T KOG1303|consen 115 FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLSLV 191 (437)
T ss_pred hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999987653321 333 567888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCC-CCccccCch---hHHHHHHHHhhccccchhhHHhhccCCCCchhHHHHHHHHH
Q 008754 315 GVIASILVVLCLFWVGLVDQVNIHSK-GTPLNLATL---PVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLIC 390 (554)
Q Consensus 315 ~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~~~~s~~~~ 390 (554)
|.+..+....+.++.+..++.+.+.. ....++.+. ++++|++.|||+||.++|+|+..||+|.+++|++.+++.++
T Consensus 192 ~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~~ 271 (437)
T KOG1303|consen 192 GAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYIIV 271 (437)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHHH
Confidence 99999999888888888877655322 332233222 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCC----Ccchhhh
Q 008754 391 TAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHL----KSHIYAI 466 (554)
Q Consensus 391 ~~lY~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~----~~~~~~~ 466 (554)
+++|+.++++||++||+++.++++.|++...+....+++++.++.+.+|.....|+.+.+|++...... +....|.
T Consensus 272 ~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~ 351 (437)
T KOG1303|consen 272 TFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRL 351 (437)
T ss_pred HHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceee
Confidence 999999999999999999999999999533455667888889999999999999999999998876554 3456899
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCccchHHHHHHHHH-HHHHHHHhHHhHHHHH
Q 008754 467 CIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVII-IVAGVVSSAIGSYSAI 545 (554)
Q Consensus 467 ~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~i-i~~g~~~~v~gty~si 545 (554)
+.|+.+++.+.++|+.+|+|+.+++++|++....+++++|+++|++.++.++...+.+.++.+ ++++++..+.....++
T Consensus 352 ~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~ 431 (437)
T KOG1303|consen 352 LVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGV 431 (437)
T ss_pred ehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997766555555666777 7888888888888888
Q ss_pred HHHHH
Q 008754 546 LKIVE 550 (554)
Q Consensus 546 ~~ii~ 550 (554)
++++.
T Consensus 432 ~~li~ 436 (437)
T KOG1303|consen 432 RSLII 436 (437)
T ss_pred HHHhh
Confidence 87764
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=7.9e-46 Score=393.03 Aligned_cols=382 Identities=17% Similarity=0.248 Sum_probs=312.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh----hCCC-C-------CCh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLD----SEPG-L-------ETY 227 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~----~~~~-~-------~~y 227 (554)
.++.+..++.+++++..+|.|+|+||+||+++||+ |++.+++.++++.||+++|.++.. |++. . .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 56789999999999999999999999999999999 999999999999999999987642 2221 1 257
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCch
Q 008754 228 PDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTV 307 (554)
Q Consensus 228 ~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~ 307 (554)
.|+++..+||+++.+..++.++++++.|+.|++..++++..+..... +..+.++..++++|++++|+++.
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~----------~~~~~~i~~~v~~~~~~i~sl~~ 192 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLD----------KRTWTYIFGACCATTVFIPSFHN 192 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcC----------CCeEEeehHHHHHHHHHccCHHH
Confidence 88999999999999999999999999999999998888776642211 23455566777788889999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhhcccc--cccCCCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCCchhHHHH
Q 008754 308 LSYISAGGVIASILVVLCLFWVGLVDQ--VNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLIT 385 (554)
Q Consensus 308 l~~~s~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~~~~ 385 (554)
++++|.+|+.++++..+.++......+ ++++. ..+.++..++.++++++|||+||.++|+++++||+|++++++...
T Consensus 193 l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l 271 (473)
T PLN03074 193 YRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLA 271 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHH
Confidence 999999998876554333333222221 11211 112344556677778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchh--hhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCCcch
Q 008754 386 CFLICTAMYAGVAYMGYTMFGESTLS--QFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHI 463 (554)
Q Consensus 386 s~~~~~~lY~~vg~~gy~~fG~~~~~--~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~ 463 (554)
+...++.+|+.++++||++||+++.+ +.+.|+|++. ..++++++.+++++.+|++++.|+...+|+.++.+..+...
T Consensus 272 ~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~ 350 (473)
T PLN03074 272 ATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSIC 350 (473)
T ss_pred HHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHH
Confidence 99999999999999999999998764 4566688664 35788999999999999999999999999988765455567
Q ss_pred hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCc-------------cchH--HHHHHHH
Q 008754 464 YAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGK-------------ATRL--QVALCVI 528 (554)
Q Consensus 464 ~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~-------------~~~~--~~~~~~~ 528 (554)
.|+.+|+.+++.++++|..+|+|+.+++++|+++++.+++++|+++|++.++++ ..+| ..+.+++
T Consensus 351 ~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 430 (473)
T PLN03074 351 LRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAF 430 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhH
Confidence 789999999999999999999999999999999999999999999999866432 2122 3588999
Q ss_pred HHHH-HHHHhHHhHHHHHHHHHHHhcC
Q 008754 529 IIVA-GVVSSAIGSYSAILKIVESLSS 554 (554)
Q Consensus 529 ii~~-g~~~~v~gty~si~~ii~~~~~ 554 (554)
++++ +++.++.|+|+++.+|++++++
T Consensus 431 iiv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 431 VVVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred HHHhhhhHhhccchHHHHHHHHHhhhh
Confidence 9975 5555789999999999998864
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=5e-49 Score=416.15 Aligned_cols=380 Identities=31% Similarity=0.560 Sum_probs=327.8
Q ss_pred CCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh---CCCCCChHHHHHHHhch
Q 008754 162 RQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS---EPGLETYPDIGQAAFGT 237 (554)
Q Consensus 162 ~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~---~~~~~~y~~l~~~~~G~ 237 (554)
|+.|.++++++++|+++|+|+|++|++++++||+ |++++++++.++.||.++|.++... +++..+|+|++++++|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 5789999999999999999999999999999999 9999999999999999999999864 35789999999999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
++++++++++.+.++|.+++|+++.+|.+..+++..... ...++..+.++.+++++|++++|+++.+++++.+|++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999998764321 1123456667788899999999999999999999998
Q ss_pred HHHHHHHHHHhhhcc----cccccCCC--CCccccCchhHHHHHHHHhhccccchhhHHhhccCCCCch---hHHHHHHH
Q 008754 318 ASILVVLCLFWVGLV----DQVNIHSK--GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFP---KVLITCFL 388 (554)
Q Consensus 318 ~~i~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~---~~~~~s~~ 388 (554)
+++..++...+.... ++.+.... ....++.+++.++++++|||.||.++|++++|||+|+|++ +++..++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 877642222222111 11111111 1234567899999999999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCC----------C
Q 008754 389 ICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSN----------H 458 (554)
Q Consensus 389 ~~~~lY~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~----------~ 458 (554)
+++++|+++|++||++||+++.++++.|+|+++....+++.+..++++.+||+..+|.++.+++.+.+. .
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 999999999999999999999999999999888778899999999999999999999999999988652 2
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCccchHHH-----HHHHHHHHHH
Q 008754 459 LKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQV-----ALCVIIIVAG 533 (554)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~~~~-----~~~~~ii~~g 533 (554)
.+.+++|+..|+++++.++++|+.+|+++.+++++|++++..++|++|+++|++.++++..+.++ .+.++.+++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 396 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFG 396 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEe
Confidence 33457789999999999999999999999999999999999999999999999998876533322 4578888999
Q ss_pred HHHhHHhHHHHH
Q 008754 534 VVSSAIGSYSAI 545 (554)
Q Consensus 534 ~~~~v~gty~si 545 (554)
+++++.|+|.++
T Consensus 397 ~~~~~~~~~~~i 408 (409)
T PF01490_consen 397 VVLMVFGTYQSI 408 (409)
T ss_pred eehhHHhHHHHc
Confidence 999999999875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-41 Score=345.60 Aligned_cols=387 Identities=23% Similarity=0.399 Sum_probs=328.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+++.|...+++|++|+++|+|++++|+||++.|.+ |++++.++|+++.++.+++.+|..+.+. .+|+++++..+|+.+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-RTYSSLGDLIFGKLG 81 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-CCHHHHHHHHcCCCc
Confidence 56789999999999999999999999999999998 9999999999999999999999954444 599999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccC--CCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLS--FGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
+....+.......| |++|+++.+|.+..+....... .+.++.+++..+.++...+++|+++.|++..+++.|.+++.
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~ 160 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLA 160 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77777777766767 7999999999998666443211 11123445555778888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccc---ccC-CCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC--chhHHHHHHHHHH
Q 008754 318 ASILVVLCLFWVGLVDQV---NIH-SKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ--FPKVLITCFLICT 391 (554)
Q Consensus 318 ~~i~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~--~~~~~~~s~~~~~ 391 (554)
+++..++.+++....... ... ..+....+.++..++++++|+|.||.+..++++|||+|++ +.++...+...++
T Consensus 161 ~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~ 240 (411)
T KOG1305|consen 161 SVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILAT 240 (411)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHH
Confidence 998888877777655332 111 1111222368899999999999999999999999999985 8999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhcCCCchhHH------HHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCC----Cc
Q 008754 392 AMYAGVAYMGYTMFGESTLSQFTLNMPQDLVA------TKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHL----KS 461 (554)
Q Consensus 392 ~lY~~vg~~gy~~fG~~~~~~i~~n~p~~~~~------~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~----~~ 461 (554)
++|..+|.+||+.||+.+.+|++.++++.... ....+....++.+..+|+..+|+|..+.+.+.+... .+
T Consensus 241 ~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s 320 (411)
T KOG1305|consen 241 LIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFS 320 (411)
T ss_pred HHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCcc
Confidence 99999999999999999999999999875432 356677777888889999999999998887766543 55
Q ss_pred chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCccchHHHHHHHHHHHHHHHHhHHhH
Q 008754 462 HIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGS 541 (554)
Q Consensus 462 ~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gt 541 (554)
+.++..++..++..+.+.|+.+|+++.+..++|++++..++||+|+++|++.+|+ +++++...++..++++...+.|+
T Consensus 321 ~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~ 398 (411)
T KOG1305|consen 321 GKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGV 398 (411)
T ss_pred ceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999998776 66778889999999999999999
Q ss_pred HHHHHHHHHH
Q 008754 542 YSAILKIVES 551 (554)
Q Consensus 542 y~si~~ii~~ 551 (554)
...+.++..+
T Consensus 399 ~~~i~~~~~~ 408 (411)
T KOG1305|consen 399 AVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHhc
Confidence 9999888754
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-41 Score=321.59 Aligned_cols=384 Identities=24% Similarity=0.404 Sum_probs=334.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC-------CCChHHHHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPG-------LETYPDIGQA 233 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~-------~~~y~~l~~~ 233 (554)
+.+++.+|+.-|..|.+=|-=|++||+|+..+||.++..++.++.+++||+.+|.+|.-...+ .++|-+++..
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~ 193 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADF 193 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999843321 5799999999
Q ss_pred Hhchh-hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhH
Q 008754 234 AFGTA-GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYIS 312 (554)
Q Consensus 234 ~~G~~-g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s 312 (554)
.+++. |+..+.+.+++++...|+.|.+..+|.+..-+|+...+ ..-|.+++.+..+|+.++|+++..+.+|
T Consensus 194 C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd--------~~sWm~i~~a~LLpc~FLk~Lk~VS~lS 265 (524)
T KOG4303|consen 194 CYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVD--------KASWMMITSASLLPCSFLKDLKIVSRLS 265 (524)
T ss_pred hcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCcc--------ccchhhhhhHHHhhhHHHHHHHHHHHHH
Confidence 88775 55888999999999999999999999999999876544 3346778888999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhh--cccccccCCCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCCchhHHHHHHHHH
Q 008754 313 AGGVIASILVVLCLFWVG--LVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLIC 390 (554)
Q Consensus 313 ~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~~~~s~~~~ 390 (554)
.+..++-+.+=++++.++ ...+.+|..-....+..++|..+|+++|+|..|..+|++...|++|++|...+..+-+..
T Consensus 266 f~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAA 345 (524)
T KOG4303|consen 266 FFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAA 345 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHH
Confidence 887776555444444333 334555555555678889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCC----------
Q 008754 391 TAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLK---------- 460 (554)
Q Consensus 391 ~~lY~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~---------- 460 (554)
.++=.++|..+|++|++.++..++.|+|... +..+.+++.++-.+.+||+-++.+.+.+|+.+.+..++
T Consensus 346 aVfK~~Fg~~~fLTf~~~TqevItnnLp~qs-fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~D 424 (524)
T KOG4303|consen 346 AVFKVVFGMLGFLTFGELTQEVITNNLPNQS-FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPD 424 (524)
T ss_pred HHHHHHHHHheeeeechhhHHHHhcCCCccc-hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCC
Confidence 9999999999999999999999999999653 34567778888889999999999999999876543211
Q ss_pred --cchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCccchHHHHHHHHHHHHHHHHhH
Q 008754 461 --SHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSA 538 (554)
Q Consensus 461 --~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v 538 (554)
-+-+...+|.++++.++++|+.+|.|..+++++|++.++.++|+.|++++++++.+...+.++.....++++|..+.+
T Consensus 425 g~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~v 504 (524)
T KOG4303|consen 425 GSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCV 504 (524)
T ss_pred cchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEE
Confidence 123446889999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HhHHHHHHHHHHHhc
Q 008754 539 IGSYSAILKIVESLS 553 (554)
Q Consensus 539 ~gty~si~~ii~~~~ 553 (554)
.|.|-+..++++.|+
T Consensus 505 sG~y~S~~~Li~A~~ 519 (524)
T KOG4303|consen 505 SGVYFSSMELIRAIN 519 (524)
T ss_pred EeEehhhHHHHHHHh
Confidence 999999999999875
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-30 Score=271.99 Aligned_cols=381 Identities=18% Similarity=0.217 Sum_probs=284.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-ChHHHHHHHhchh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLE-TYPDIGQAAFGTA 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~-~y~~l~~~~~G~~ 238 (554)
+++.+..++++++.+++||+|+|++|++++..|+. +++++++.+.+++++.+++.|+..+.+..+ +|.+++++.+||+
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~ 85 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKK 85 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcc
Confidence 66789999999999999999999999999999998 999999999999999999999998777764 9999999999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
+++++++.+.+.+++.+.+|.+..++.+..+++....... . .+....++.+.++.++++.++...++..+.+....
T Consensus 86 ~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~---~-~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 86 GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP---L-PRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC---c-chHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999975321110 2 24566667777777799999999999999988877
Q ss_pred HHHHHHHHHhhhcccccc-c-CCCCC-ccccCchhHHHHHHHHhhccccchhhHHhhccCCCC--chhHHHHHHHHHHHH
Q 008754 319 SILVVLCLFWVGLVDQVN-I-HSKGT-PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ--FPKVLITCFLICTAM 393 (554)
Q Consensus 319 ~i~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~--~~~~~~~s~~~~~~l 393 (554)
++.+++.+++.....+.. . ..+.. ...+..+..++++++|||+||+++|++++|||++.+ .+|+..++..+..++
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vl 241 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVL 241 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 776666555543221111 1 11111 366788999999999999999999999999998875 999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhhhcCCCchhHHHH-------------HHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCC-
Q 008754 394 YAGVAYMGYTMFGESTLSQFTLNMPQDLVATK-------------IAVWTTVVNPFTKYALTISPVAMSLEELIPSNHL- 459 (554)
Q Consensus 394 Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~-------------i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~- 459 (554)
|+.+++++|..+|+.+.+++..+.+++..... ....+..+.+.++|--.....++..++.+.+.+.
T Consensus 242 yi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~ 321 (415)
T COG0814 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSK 321 (415)
T ss_pred HHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCc
Confidence 99999999999999999999999987644221 1222222222233222223333444444443111
Q ss_pred -----CcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCccchHHHHHHHHHHHHHH
Q 008754 460 -----KSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGV 534 (554)
Q Consensus 460 -----~~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~ii~~g~ 534 (554)
.............++....++...+..+.+++.+|+.....+.++.|...+.+....+..+..+...++++++|+
T Consensus 322 ~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi 401 (415)
T COG0814 322 PGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGI 401 (415)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHH
Confidence 111223344455555566666667777777777777777777777777776655443333332356788888888
Q ss_pred HHhHHhHHHHH
Q 008754 535 VSSAIGSYSAI 545 (554)
Q Consensus 535 ~~~v~gty~si 545 (554)
..+....+...
T Consensus 402 ~~~~~~~~~~~ 412 (415)
T COG0814 402 LVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHHh
Confidence 88887776543
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=8.6e-24 Score=220.12 Aligned_cols=366 Identities=18% Similarity=0.216 Sum_probs=264.5
Q ss_pred CCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHH
Q 008754 163 QSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRI 241 (554)
Q Consensus 163 ~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~ 241 (554)
+.+...+++.+.++.||+|+|++|.+...+|.. +++++++++.++++++.++.|...+.++..+|.+++++.+||++++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~ 81 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGI 81 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHH
Confidence 457899999999999999999999999999998 9999999999999999999999878877899999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHH
Q 008754 242 AVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASIL 321 (554)
Q Consensus 242 ~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~ 321 (554)
+..+.+.+..++.+++|+...++.++++++.... .... +....++..++...+.+. ..+...+++..-+...+.
T Consensus 82 ~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~----~~~~-~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~ 155 (394)
T PF03222_consen 82 VIGISYLFLLYALLVAYISGGGSILSSLLGNQLG----TDLS-PWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMII 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----CCCc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875431 1111 122222222222222222 333444444333333222
Q ss_pred HHHHHHhhhcccccc----cCCCCCccccCchhHHHHHHHHhhccccchhhHHhhccC-CCCchhHHHHHHHHHHHHHHH
Q 008754 322 VVLCLFWVGLVDQVN----IHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQ-PNQFPKVLITCFLICTAMYAG 396 (554)
Q Consensus 322 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~-p~~~~~~~~~s~~~~~~lY~~ 396 (554)
.++.++..... +.+ .+..+...++..+..++++.++||..|+++|.+.+.+++ ++|.+|++.++..+..++|++
T Consensus 156 ~~~~l~~~~~p-~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~ 234 (394)
T PF03222_consen 156 SFIILVVYLIP-HWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLL 234 (394)
T ss_pred HHHHHHHHHhh-hcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222211 111 111223467888899999999999999999999999985 567999999999999999988
Q ss_pred HHHHHHHHh-----------cCCch--hhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCCcch
Q 008754 397 VAYMGYTMF-----------GESTL--SQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHI 463 (554)
Q Consensus 397 vg~~gy~~f-----------G~~~~--~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~ 463 (554)
.-+...... +.+.. .....+...+.....+...+..+.+.++|--.....++.+.+.++.++. ..
T Consensus 235 w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~--~~ 312 (394)
T PF03222_consen 235 WVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNN--SS 312 (394)
T ss_pred HHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--cc
Confidence 654443211 11111 1123344444556667788888888999999999999999998877332 34
Q ss_pred hhhHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCccch-----HHHHHHHHHHHHHHHHh
Q 008754 464 YAICIRTALVISTLLVGLAIPF-FGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATR-----LQVALCVIIIVAGVVSS 537 (554)
Q Consensus 464 ~~~~~~~~~~~~~~~vA~~vp~-~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~-----~~~~~~~~ii~~g~~~~ 537 (554)
.|.....+...+++++|...|+ |...+++.| ....++..++|+++.++.|+++..+ ..+....+++++|++..
T Consensus 313 ~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 313 GRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred chHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 4555667777888999999985 889999999 8888999999999999998754322 22444555555555544
Q ss_pred H
Q 008754 538 A 538 (554)
Q Consensus 538 v 538 (554)
+
T Consensus 392 i 392 (394)
T PF03222_consen 392 I 392 (394)
T ss_pred H
Confidence 3
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.93 E-value=5.8e-24 Score=222.68 Aligned_cols=339 Identities=15% Similarity=0.136 Sum_probs=254.0
Q ss_pred HHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHHHHHHH
Q 008754 169 ALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVIL 247 (554)
Q Consensus 169 a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~~ 247 (554)
+++.+++++||+|+|++|.++.+.|+. +++++++.++++.++..++.++..+.|+..+|.++++++|||++++++.+.+
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 345678999999999999999888887 8888899999999999999999888887789999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHHHHHHHH
Q 008754 248 YAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLF 327 (554)
Q Consensus 248 ~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~~~~~~~ 327 (554)
++.++..+++|.+..++++..+++..... . .. .....++..+++.++. .++.+...+++.+.++..+..++.++
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~--~~-~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFGF--P--WS-ARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCC--C--cc-HHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888642111 0 11 2333444444455554 44778888888877766665544444
Q ss_pred hhhccc-c-cccCCCC-CccccCchhHHHHHHHHhhccccchhhHHhhccCC-CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008754 328 WVGLVD-Q-VNIHSKG-TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQP-NQFPKVLITCFLICTAMYAGVAYMGYT 403 (554)
Q Consensus 328 ~~~~~~-~-~~~~~~~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p-~~~~~~~~~s~~~~~~lY~~vg~~gy~ 403 (554)
..+... + .+..+.. ...++.++..+++...++|++|.+++.+.++++++ +|.+|++.++..+++++|+++.+....
T Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g 235 (381)
T TIGR00837 156 SGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMG 235 (381)
T ss_pred HHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333322 1 1111111 12345678889999999999999999999999755 469999999999999999999887776
Q ss_pred HhcCCchhhhhc-------------CCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCCcchhhhHHHH
Q 008754 404 MFGESTLSQFTL-------------NMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRT 470 (554)
Q Consensus 404 ~fG~~~~~~i~~-------------n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~ 470 (554)
.++.+...+... +.-...+...+......+.+.+++.......++.+.+.+++++++ ..|.....
T Consensus 236 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~--~~~~~~~~ 313 (381)
T TIGR00837 236 NLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK--KGRFKTGL 313 (381)
T ss_pred CCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCchhhh
Confidence 665443222111 111122344566667777888888888888888888888775433 22455667
Q ss_pred HHHHHHHHHHhhcch-hHHHHHHHHHHHhhHHHHhhhhHHHHHHhcC
Q 008754 471 ALVISTLLVGLAIPF-FGLVMSLIGSLLTMLVTLILPCLCFLSILRG 516 (554)
Q Consensus 471 ~~~~~~~~vA~~vp~-~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~ 516 (554)
+..++++++|.+.|+ +-..++..| +++.++.+++|++++++.||+
T Consensus 314 ~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 314 LTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 777888999999997 448999999 778889999999999998765
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=6.9e-23 Score=211.38 Aligned_cols=370 Identities=14% Similarity=0.139 Sum_probs=268.0
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+++.+...+++.+.++.||+|+|++|.+.+++|+. ++++++++++++.||+.++.|...+.++..++..++++.+||.|
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g 87 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGW 87 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 67789999999999999999999999999999999 99999999999999999999998777777899999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
+.+.++.+.+.+|+.+++|+.-.++.++..++....+ .. +..-.++.+++.-.+.+. ..+...+++.+-+...
T Consensus 88 ~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~-----i~-~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~ 160 (414)
T PRK10483 88 NVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLN-----VP-ARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAK 160 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCC-----Cc-HHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998652211 11 233444444444444444 4455555554333333
Q ss_pred HHHHHHHHhhhcccccc----cCC-CCCccccCchhHHHHHHHHhhccccchhhHHhhccC-CCCchhHHHHHHHHHHHH
Q 008754 320 ILVVLCLFWVGLVDQVN----IHS-KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQ-PNQFPKVLITCFLICTAM 393 (554)
Q Consensus 320 i~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~-p~~~~~~~~~s~~~~~~l 393 (554)
++..+.++.... .+.+ .+. ......+..+..+++++++||+.|+++|++.+.+++ ++|.+|++.++..+..++
T Consensus 161 i~~f~~~~~~l~-~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~ 239 (414)
T PRK10483 161 VITFFLTFGSLL-GHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALAL 239 (414)
T ss_pred HHHHHHHHHHHH-hhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 322222222211 1111 111 111122456789999999999999999999999886 467999999999999999
Q ss_pred HHHHHHHHHHHhcCCc----------hhh---hhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCC
Q 008754 394 YAGVAYMGYTMFGEST----------LSQ---FTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLK 460 (554)
Q Consensus 394 Y~~vg~~gy~~fG~~~----------~~~---i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~ 460 (554)
|++.-.......+.+. .+. .+.+..++.....+..++..+.+.++|--......+.+.+.++.+++.
T Consensus 240 yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~~ 319 (414)
T PRK10483 240 YTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSA 319 (414)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9996555444332111 111 112222334455567777778888999988999999999988876532
Q ss_pred cchhhhHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHhhHHHHhhhhHHHHHHhcC-ccch----HHHHHHHHHHHHHH
Q 008754 461 SHIYAICIRTALVISTLLVGLAIPF-FGLVMSLIGSLLTMLVTLILPCLCFLSILRG-KATR----LQVALCVIIIVAGV 534 (554)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~vA~~vp~-~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~-~~~~----~~~~~~~~ii~~g~ 534 (554)
..|.....+..++++++|+..|+ |-..+++.|.+ ..++..++|+++.++.||+ +.+. ..+...++++++|+
T Consensus 320 --~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~ 396 (414)
T PRK10483 320 --MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGV 396 (414)
T ss_pred --ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHH
Confidence 33455566788899999999996 88999999977 5667789999999999875 2221 22344466666666
Q ss_pred HHhHHhH
Q 008754 535 VSSAIGS 541 (554)
Q Consensus 535 ~~~v~gt 541 (554)
+..+.-.
T Consensus 397 ~~i~~~i 403 (414)
T PRK10483 397 GNALVHI 403 (414)
T ss_pred HHHHHHH
Confidence 6555443
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.92 E-value=2.8e-22 Score=206.57 Aligned_cols=370 Identities=15% Similarity=0.126 Sum_probs=264.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+||.+...+++.+.++.||+|+|++|.+.+++|+. ++++++++++++.||+.++.|...+.++..++..++++.+||+|
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g 85 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTW 85 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 44458888999999999999999999999999999 99999999999999999999998788788899999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
+.+.++.+.+.+|+.+++|+...++.++..++... +.... +....++.+++..++.+. ..+...+++.+-+...
T Consensus 86 ~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~~i~-~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 86 NIISGITVAFVLYILTYAYISANGAIISETISMNL----GYHAN-PRIVGICTAIFVASVLWI-SSLAASRITSLFLGLK 159 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cCCCc-HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986411 11111 223334445555555544 3455555554333222
Q ss_pred HHHHHHHHhhhcccccc---cCCCCCcc----ccCchhHHHHHHHHhhccccchhhHHhhccCC-CCchhHHHHHHHHHH
Q 008754 320 ILVVLCLFWVGLVDQVN---IHSKGTPL----NLATLPVAIGLYGYCYSGHAVFPNIYTSMAQP-NQFPKVLITCFLICT 391 (554)
Q Consensus 320 i~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p-~~~~~~~~~s~~~~~ 391 (554)
++..+..+... ..+.+ ........ .+..+..+++++++||+.|+++|++.+.+++. +|.+|++.++..+..
T Consensus 160 ii~f~~~~~~l-~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpL 238 (415)
T PRK09664 160 IISFVIVFGSF-FFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLAL 238 (415)
T ss_pred HHHHHHHHHHH-hhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 22222222221 11111 11001000 12347789999999999999999999999865 568999999999999
Q ss_pred HHHHHHHHHHHHH-----------hcCCchhh---hhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCC
Q 008754 392 AMYAGVAYMGYTM-----------FGESTLSQ---FTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSN 457 (554)
Q Consensus 392 ~lY~~vg~~gy~~-----------fG~~~~~~---i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~ 457 (554)
++|++.-.+.... .|+++..- ...+ ..+.....+..++..+.+.++|--......+.+.+.++.+
T Consensus 239 viY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~ 317 (415)
T PRK09664 239 VIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID 317 (415)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9997754443321 22221111 1112 2334455667777778888999888899999999988775
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHhhHHHHhhhhHHHHHHhcC-ccc----hHHHHHHHHHHH
Q 008754 458 HLKSHIYAICIRTALVISTLLVGLAIPF-FGLVMSLIGSLLTMLVTLILPCLCFLSILRG-KAT----RLQVALCVIIIV 531 (554)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~vA~~vp~-~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~-~~~----~~~~~~~~~ii~ 531 (554)
+.+ ..|.....+..++++++++..|+ |-..+++.|.. ..++..++|+++-++.|++ ... +..|..-+++++
T Consensus 318 ~~~--~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~ 394 (415)
T PRK09664 318 NSH--GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVIL 394 (415)
T ss_pred Ccc--ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHH
Confidence 432 34555667788899999999996 88999999986 5678889999999999875 211 223566666777
Q ss_pred HHHHHhHHhH
Q 008754 532 AGVVSSAIGS 541 (554)
Q Consensus 532 ~g~~~~v~gt 541 (554)
+|++..++-.
T Consensus 395 ~g~~ii~~~~ 404 (415)
T PRK09664 395 FGITVILCWF 404 (415)
T ss_pred HHHHHHHHHH
Confidence 7776665544
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.92 E-value=4.5e-22 Score=206.30 Aligned_cols=367 Identities=15% Similarity=0.153 Sum_probs=258.9
Q ss_pred CHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHHH
Q 008754 165 SYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAV 243 (554)
Q Consensus 165 s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~~ 243 (554)
+...+++.+.++.||+|+|++|.+...+|.. +++++++++.+..|+++++.|+..+.++..++.+++++.+||+|+++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 6789999999999999999999999999998 999999999999999999999876666668999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHHHH
Q 008754 244 SVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVV 323 (554)
Q Consensus 244 ~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~~~ 323 (554)
.+.+.+..|..+++|+...++.+.+.+.... ++..+.. ...+..+++.....+. ..+...++..+-+...++..
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~----~~~i~~~-~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWT----GISMSPT-AGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc----cCCCChH-HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888775421 1111112 2222222222222222 33444444433222222221
Q ss_pred HHHHhhhcccccccCC-CCCccccCchhHHHHHHHHhhccccchhhHHhhccCC-CCchhHHHHHHHHHHHHHHHHHHHH
Q 008754 324 LCLFWVGLVDQVNIHS-KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQP-NQFPKVLITCFLICTAMYAGVAYMG 401 (554)
Q Consensus 324 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p-~~~~~~~~~s~~~~~~lY~~vg~~g 401 (554)
+..... ...+.+.+. ...+.+...+..+++++++||+.|+++|++.+.+++. +|.+|++.++..+..++|++.-...
T Consensus 158 ~~~~~~-l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 158 VVMLAL-MMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred HHHHHH-HHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 111111100 0001122248899999999999999999999999864 5799999999999999999887776
Q ss_pred HHHhcCCchh----------hhh---cCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCCcchhhhHH
Q 008754 402 YTMFGESTLS----------QFT---LNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICI 468 (554)
Q Consensus 402 y~~fG~~~~~----------~i~---~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~ 468 (554)
....+.+... +++ .+..+......+...+..+.+.++|--......+.+.+.+.++.++ ..|...
T Consensus 237 lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~--~~r~~~ 314 (403)
T PRK15132 237 LGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTV--GGRLQT 314 (403)
T ss_pred HhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc--cCCchh
Confidence 6554433111 111 1112234455667777778888999888899999999988664332 335666
Q ss_pred HHHHHHHHHHHHhhcch-hHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCc-cchH----HHHHHHHHHHHHHHHhHHhH
Q 008754 469 RTALVISTLLVGLAIPF-FGLVMSLIGSLLTMLVTLILPCLCFLSILRGK-ATRL----QVALCVIIIVAGVVSSAIGS 541 (554)
Q Consensus 469 ~~~~~~~~~~vA~~vp~-~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~-~~~~----~~~~~~~ii~~g~~~~v~gt 541 (554)
..+..++++++|+..|+ |...+++.|.. ..++.+++|+++.++.|+++ .++. .+...++++++|++..+.-.
T Consensus 315 ~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 315 GLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHH
Confidence 77888999999999996 88899998865 67799999999999988644 1122 35667777788877665443
No 14
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.90 E-value=9.9e-23 Score=209.95 Aligned_cols=350 Identities=15% Similarity=0.172 Sum_probs=225.6
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhhchhHHHH-HhhcHH--HHHHHHHHHHHHH---HHHHHHHHhhhhCCCCCChHHHHH
Q 008754 159 PISRQSSYAQALLNGMNVLCGVGILSTPYAA-KEGGWF--GLLILVAFGVLSF---YTGILLRRCLDSEPGLETYPDIGQ 232 (554)
Q Consensus 159 ~~~~~~s~~~a~~~li~~iiG~GiLslP~a~-~~~G~~--g~ill~~~~~ls~---~t~~~L~~~~~~~~~~~~y~~l~~ 232 (554)
+.+|+.+...++..+++++||+|||..|..+ +++|.+ .+++.+++|+++. +|...|+.+.++.+|.+.| ..
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ay---i~ 85 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAY---IS 85 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhh---HH
Confidence 3489999999999999999999999999887 577776 4444456666554 5677777777777787777 78
Q ss_pred HHhchhhHHHHHHHHHHH-HhHHHHHHHHHHHhh-hhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhH
Q 008754 233 AAFGTAGRIAVSVILYAE-LYACCIEYIILESDN-LSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSY 310 (554)
Q Consensus 233 ~~~G~~g~~~~~i~~~~~-~~g~~~~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~ 310 (554)
++||+...+...|.-++. .-..+..+.+.++++ +.+.++.+..+ +....++.++++..+.++ |+..+++
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p--------~~~~~lla~~~l~~lt~~-n~~~V~~ 156 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVP--------RVASKLLAAALLVLLTLI-NSFSVKW 156 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCc--------hHHHHHHHHHHHHHHHHH-hhhhhhH
Confidence 889999888877765554 444447788888888 88888743211 223333333444444433 4444444
Q ss_pred ---hHHHHHHHHHHHHHHHHhhhcc-------cccccC-CCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-
Q 008754 311 ---ISAGGVIASILVVLCLFWVGLV-------DQVNIH-SKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ- 378 (554)
Q Consensus 311 ---~s~~~~~~~i~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~- 378 (554)
++.+..++-++.+..++..|+. ++...+ .++...+..++..++....|||.||+.+..+.+|+|||+|
T Consensus 157 a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~kt 236 (479)
T KOG1287|consen 157 ATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRT 236 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcccc
Confidence 4433333444443333333322 111111 4555677788999999999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hh-----hh-cCCCchhHHHHHHHHHHHHh-----hhhhhcchhhh
Q 008754 379 FPKVLITCFLICTAMYAGVAYMGYTMFGESTL--SQ-----FT-LNMPQDLVATKIAVWTTVVN-----PFTKYALTISP 445 (554)
Q Consensus 379 ~~~~~~~s~~~~~~lY~~vg~~gy~~fG~~~~--~~-----i~-~n~p~~~~~~~i~~~~~~i~-----~~~s~pl~~~p 445 (554)
+|+++.+++.+++++|+++.+.++..-..+.. ++ +. ..++...+..-++..+..+. +++.-.+....
T Consensus 237 LP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~ 316 (479)
T KOG1287|consen 237 LPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAG 316 (479)
T ss_pred chHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999988764422111 11 11 11121111111222222221 11111222222
Q ss_pred HHHHHHhhcCCCCCCcchhhhHH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCccchHHH
Q 008754 446 VAMSLEELIPSNHLKSHIYAICI--RTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQV 523 (554)
Q Consensus 446 ~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~~~~ 523 (554)
+.|+++|.--...+.++... .+++.....++.....|+..+++.++-..+....+.+-+++++|.++++.+|+.|
T Consensus 317 ---areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiK 393 (479)
T KOG1287|consen 317 ---AREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIK 393 (479)
T ss_pred ---HHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEe
Confidence 23666665432222333223 3344444455555567899999999999999999999999999999988777665
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.85 E-value=3e-18 Score=176.94 Aligned_cols=370 Identities=15% Similarity=0.173 Sum_probs=250.6
Q ss_pred HHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhC-CCCCChHHHHHHHhchhhHHHHH
Q 008754 167 AQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSE-PGLETYPDIGQAAFGTAGRIAVS 244 (554)
Q Consensus 167 ~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~-~~~~~y~~l~~~~~G~~g~~~~~ 244 (554)
..-++.+.++.||+|+|++|-.....|.. .+++++++..+++++.+.|.|...+. ++..+|.+++++.|||+|+.+..
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHH
Confidence 44458999999999999999999999988 99999999999999999999876555 55679999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHHHHH
Q 008754 245 VILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVL 324 (554)
Q Consensus 245 i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~~~~ 324 (554)
+++++..+..+.+|...+.+.+..++.+. .... ... +....++.+++.....+. .-+.+-+++.+-+...+..++
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~q-l~~~--~~~-r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~ 176 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQ-LGFA--PLN-RGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLV 176 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcC--Ccc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887764332 1110 111 334444444444444433 334444444332222222222
Q ss_pred HHHhhhcc--cccccCC-C----CCccc---cCchhHHHHHHHHhhccccchhhHHhh----cc-----C--CCCchhHH
Q 008754 325 CLFWVGLV--DQVNIHS-K----GTPLN---LATLPVAIGLYGYCYSGHAVFPNIYTS----MA-----Q--PNQFPKVL 383 (554)
Q Consensus 325 ~~~~~~~~--~~~~~~~-~----~~~~~---~~~~~~a~~~~~faf~g~~~i~~i~~e----mk-----~--p~~~~~~~ 383 (554)
.+....+. +...... + +...+ ...+..+++++++||+.|+.+|++... .+ + ++|.+|++
T Consensus 177 ~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii 256 (443)
T PRK13629 177 LISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQII 256 (443)
T ss_pred HHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHH
Confidence 21111111 0000100 0 00001 124778999999999999999999988 43 3 34578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchh-----h------hhcCCCc---h-----hHHHHHHHHHHHHhhhhhhcchhh
Q 008754 384 ITCFLICTAMYAGVAYMGYTMFGESTLS-----Q------FTLNMPQ---D-----LVATKIAVWTTVVNPFTKYALTIS 444 (554)
Q Consensus 384 ~~s~~~~~~lY~~vg~~gy~~fG~~~~~-----~------i~~n~p~---~-----~~~~~i~~~~~~i~~~~s~pl~~~ 444 (554)
.++..+..++|+..-+.+....+++... | +...+++ . .....+..++..+.+.++|--...
T Consensus 257 ~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~L 336 (443)
T PRK13629 257 SRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYL 336 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887777655433211 1 1111222 1 334555666666788888888889
Q ss_pred hHHHHHHhhcCC----CCC---CcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCc
Q 008754 445 PVAMSLEELIPS----NHL---KSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGK 517 (554)
Q Consensus 445 p~~~~l~~~l~~----~~~---~~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~ 517 (554)
.+++.+++++.+ ... +.+..+.....++.+.+.+++..-|++-.++.-+|+-....+.|++|....+|.- .
T Consensus 337 Gl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp--~ 414 (443)
T PRK13629 337 GTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAP--S 414 (443)
T ss_pred HHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccH--H
Confidence 999988887731 111 1223355666777788888888889999999976666677789999998777643 2
Q ss_pred cchHH-HHHHHHHHHHHHHHhHHhHHH
Q 008754 518 ATRLQ-VALCVIIIVAGVVSSAIGSYS 543 (554)
Q Consensus 518 ~~~~~-~~~~~~ii~~g~~~~v~gty~ 543 (554)
.++.+ +..+++++++|++......|.
T Consensus 415 l~~yr~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 415 LAKYRGRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHh
Confidence 33333 345899999998887766553
No 16
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.84 E-value=1.5e-18 Score=180.55 Aligned_cols=361 Identities=14% Similarity=0.158 Sum_probs=243.5
Q ss_pred HHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCChHHHHHHHhchhhHHHHH
Q 008754 167 AQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPG-LETYPDIGQAAFGTAGRIAVS 244 (554)
Q Consensus 167 ~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~-~~~y~~l~~~~~G~~g~~~~~ 244 (554)
..-++.+.++++|+|+|.+|....+.||. .++..++...+++++..++.|....++. ..++.++.++.|||+++.+.+
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHH
Confidence 56678999999999999999999999999 6666666666777888888876434443 689999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHHHHH
Q 008754 245 VILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVL 324 (554)
Q Consensus 245 i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~~~~ 324 (554)
+++++..+..+.+|....++.+..++....... ...+....++..++..... ....+.+.+++.+-+...++.++
T Consensus 86 ~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~----~p~~~i~~lilv~il~~iv-~~G~~~i~r~~~il~~~~ii~l~ 160 (397)
T TIGR00814 86 LLYFFAIYPILLIYSVAITNDSASFLVNQLGTA----PPLRGLLSLALILILVAIM-SFGEKLLFKIMGPLVFPLVLILV 160 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHHHH-HhcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888877775421110 0012122222222222333 34777777777655544433333
Q ss_pred HHHhhhcc--cccccCCCC-CccccCchhHHHHHHHHhhccccchhhHH----hhccCC----CCchhHHHHHHHHHHHH
Q 008754 325 CLFWVGLV--DQVNIHSKG-TPLNLATLPVAIGLYGYCYSGHAVFPNIY----TSMAQP----NQFPKVLITCFLICTAM 393 (554)
Q Consensus 325 ~~~~~~~~--~~~~~~~~~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~----~emk~p----~~~~~~~~~s~~~~~~l 393 (554)
.+...... +.......+ ....+.++..+++..++||.+|+.++++. ++.+|| +|.+|++..+..+.+++
T Consensus 161 ~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~ 240 (397)
T TIGR00814 161 LLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVAT 240 (397)
T ss_pred HHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 33222221 111111111 11134678899999999999999999998 445533 35789999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhh----------hcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcC----C-CC
Q 008754 394 YAGVAYMGYTMFGESTLSQF----------TLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIP----S-NH 458 (554)
Q Consensus 394 Y~~vg~~gy~~fG~~~~~~i----------~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~----~-~~ 458 (554)
|+..-+.+....+.+..... +.|..+......+...+..+.+.++|--....+++.+.+++. . .+
T Consensus 241 y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~ 320 (397)
T TIGR00814 241 VMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK 320 (397)
T ss_pred HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Confidence 99988887777664432211 111122334556667777778888998899999999888772 1 11
Q ss_pred -CCcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCccchHHH-HHHHHHHHHHH
Q 008754 459 -LKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQV-ALCVIIIVAGV 534 (554)
Q Consensus 459 -~~~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~~~~-~~~~~ii~~g~ 534 (554)
.+.+........++.+.+..+|..-|++-.+++-+|+-....+.|++|....+|.- ..++.+. ..+++++++|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~--~l~~~~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 321 KINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP--ALKKYRGRISNVFVTVIGL 396 (397)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH--HHHHhCCCcchheeEeeec
Confidence 11123344566677778888888889998888866666667789999998777542 3333332 45777766664
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.80 E-value=1.5e-16 Score=169.86 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=152.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhH
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~ 240 (554)
+|+++.++.+...++++||+|++.+|..+.+.|..+++..++.+++.......+.|...+.|.........++++||+.+
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~g 84 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGN 84 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcchH
Confidence 78899999999999999999999999888888876777777777776666666666554444433444558899999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHH--HHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFA--LMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 241 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
++..+.+++........+.+...+++..+++... +....+. ++...++.-+. .+..+...+++.+.++.
T Consensus 85 f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~--------~~~~~~~~~~~~l~~~~~ln-~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 85 FMANYTYGVSLLIANVAIAISAVGYGTELFGATL--------SPVQICLATIGVLWLCTVAN-FGGARITGQISSVTVWG 155 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------chHHHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHH
Confidence 9999988776655555555555667766665211 0111111 11111222222 33556566655544443
Q ss_pred HHHHHHHHHhhhc--ccccccCCC--CCc-cccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHHHH
Q 008754 319 SILVVLCLFWVGL--VDQVNIHSK--GTP-LNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTA 392 (554)
Q Consensus 319 ~i~~~~~~~~~~~--~~~~~~~~~--~~~-~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~~~ 392 (554)
.++.++.++..+. .+..++.+. +.. ..+.++..++....|+|.|++.+..+.+|+|||+| .||++..+..++.+
T Consensus 156 ~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~ 235 (438)
T PRK10655 156 VIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAV 235 (438)
T ss_pred HHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHH
Confidence 3332222222111 111111111 111 11245666788899999999999999999999987 99999999999999
Q ss_pred HHHHHHHHHHH
Q 008754 393 MYAGVAYMGYT 403 (554)
Q Consensus 393 lY~~vg~~gy~ 403 (554)
+|+++......
T Consensus 236 ~Y~l~~~~~~~ 246 (438)
T PRK10655 236 IYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHh
Confidence 99987765543
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.79 E-value=3.6e-16 Score=166.50 Aligned_cols=236 Identities=13% Similarity=0.089 Sum_probs=154.0
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhH
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~ 240 (554)
+|+++.++.+...++.+||+|++.+|....+.|...+...++.++.+......+.|...+.|........+++ +|+..+
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~g 82 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAFG 82 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHHH
Confidence 7899999999999999999999999998888887555555566666665566666665555554444444677 799999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHH
Q 008754 241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASI 320 (554)
Q Consensus 241 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i 320 (554)
+++.+..+...+.....+.+....++..+++....+ . ....+.++...++..+ -.+..+..+.++.+..+..+
T Consensus 83 f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~---~---~~~~~~~~i~~~~~~l-n~~gvk~~~~i~~i~~~~~l 155 (435)
T PRK10435 83 FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP---I---PAGIACIAIVWVFTFV-NMLGGTWVSRLTTIGLVLVL 155 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh---H---HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHH
Confidence 999998776554445555566667777776533110 0 0111111111112222 23355566666555444433
Q ss_pred HHHHHHHhhhcc--ccc----ccCCCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHHHHH
Q 008754 321 LVVLCLFWVGLV--DQV----NIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAM 393 (554)
Q Consensus 321 ~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~~~l 393 (554)
+.++..+..+.. +.. ++.+ ..+.++.++..++....|+|.|.+.+....+|+|||+| +||++..+..+++++
T Consensus 156 i~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~il 234 (435)
T PRK10435 156 IPVVGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGII 234 (435)
T ss_pred HHHHHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHH
Confidence 332222222211 111 1111 11233557788889999999999999999999999986 999999999999999
Q ss_pred HHHHHHHHHHHh
Q 008754 394 YAGVAYMGYTMF 405 (554)
Q Consensus 394 Y~~vg~~gy~~f 405 (554)
|+++.+......
T Consensus 235 Yil~~~~~~~~~ 246 (435)
T PRK10435 235 YIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHhcC
Confidence 999888765444
No 19
>PRK10249 phenylalanine transporter; Provisional
Probab=99.78 E-value=1.3e-15 Score=163.13 Aligned_cols=234 Identities=12% Similarity=0.118 Sum_probs=159.6
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTP-YAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP-~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+++.++..+..++.+||+|++.+| .+++++|...++..++.+++.+..+..+.|...+.|.........++.+|+..
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~ 99 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFA 99 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 78999999999999999999999999 55678887666777788888888888888887777776677778999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
++++.+..++.............+.++..+++..+ ...+.++..+++..+. .++.+..+++.....+..
T Consensus 100 gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~~~ik 168 (458)
T PRK10249 100 GFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVP----------TWIWAAAFFIIINAVN-LVNVRLYGETEFWFALIK 168 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCc----------HHHHHHHHHHHHHHHH-HhcchhhhhHHHHHHHHH
Confidence 99999988877655556666666777766654321 1222222223333333 235555555443322221
Q ss_pred H----HHHHHHHh--hhcccc--cccC----CC-CCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHH
Q 008754 320 I----LVVLCLFW--VGLVDQ--VNIH----SK-GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLIT 385 (554)
Q Consensus 320 i----~~~~~~~~--~~~~~~--~~~~----~~-~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~ 385 (554)
+ .+++..++ .+...+ .++. .. ..+.++.++..++....|+|.|.+.+....+|+|||+| .||++..
T Consensus 169 v~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~ 248 (458)
T PRK10249 169 VLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQ 248 (458)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHH
Confidence 1 11111111 111111 1111 00 11234566788999999999999999999999999997 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008754 386 CFLICTAMYAGVAYMGYTMF 405 (554)
Q Consensus 386 s~~~~~~lY~~vg~~gy~~f 405 (554)
++..+.++|++..+......
T Consensus 249 ~~~~~~~~y~~~~~~~~~~~ 268 (458)
T PRK10249 249 VVYRILLFYIGSLVVLLALY 268 (458)
T ss_pred HHHHHHHHHHHHHHHHheec
Confidence 99999999988665554443
No 20
>PRK11021 putative transporter; Provisional
Probab=99.77 E-value=2.6e-15 Score=158.82 Aligned_cols=229 Identities=17% Similarity=0.225 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHhhhhhhhchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHH
Q 008754 164 SSYAQALLNGMNVLCGVGILSTPYA-AKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIA 242 (554)
Q Consensus 164 ~s~~~a~~~li~~iiG~GiLslP~a-~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~ 242 (554)
++.++++...+++|||+|++.+|.. .+.+|...++..++.+++.......+.|...+.|+........++++|++..++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 3789999999999999999999954 567775555566666666666666666666555554555556899999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHHH
Q 008754 243 VSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILV 322 (554)
Q Consensus 243 ~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~~ 322 (554)
..+..++.......+.......++..+++... + ......++..+++..+ -.+..+...+++.+..+..+.+
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~l-n~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWSS-----W---QLLLAELLTLALLWLL-NLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC-----c---hHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHH
Confidence 99987764433333344445556666554211 1 0112222222222222 2346666666555433222222
Q ss_pred HHHHHhhhcccccccC-CCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHHHHHHHHHHHH
Q 008754 323 VLCLFWVGLVDQVNIH-SKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMYAGVAYM 400 (554)
Q Consensus 323 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~~~lY~~vg~~ 400 (554)
++..+..+..+..++. ......++.++..++....|+|.|++.+....+|+|||+| +||++..+..+++++|+++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 152 VVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211111111 1112335667888999999999999999999999999987 9999999999999999998765
Q ss_pred H
Q 008754 401 G 401 (554)
Q Consensus 401 g 401 (554)
.
T Consensus 232 ~ 232 (410)
T PRK11021 232 V 232 (410)
T ss_pred H
Confidence 3
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=99.77 E-value=1.8e-15 Score=163.45 Aligned_cols=344 Identities=13% Similarity=0.146 Sum_probs=193.3
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~-a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+++.++..+..++.+||+|++..|. +++.+|..+++..++.+++.+..+..+.|...+.|........+++++|++.
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~~ 106 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKA 106 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcHh
Confidence 788999999999999999999999995 6688887777777788888888888888887777776677777999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
++++.+..++.....+.......+.++..+ +... ... ...+.++..+++..+.. +..+....+.....+..
T Consensus 107 gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-~~~------~~~~~~~~~~l~~~iN~-~gvk~~~~i~~~~~~ik 177 (499)
T PRK15049 107 AYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-GVP------QWVFALAALTIVGTMNM-IGVKWFAEMEFWFALIK 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CCc------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999887764433333333334443322 1111 001 12223333333333332 25555555554333222
Q ss_pred HHHHHH----HHh-hhcccccc-----cC--CCCC---ccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHH
Q 008754 320 ILVVLC----LFW-VGLVDQVN-----IH--SKGT---PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVL 383 (554)
Q Consensus 320 i~~~~~----~~~-~~~~~~~~-----~~--~~~~---~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~ 383 (554)
++.++. .+. .......+ +. .+.. +.++.++..++...+|+|.|.+.+....+|+|||+| .||++
T Consensus 178 i~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi 257 (499)
T PRK15049 178 VLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAI 257 (499)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHH
Confidence 211111 111 11111000 00 0000 111223345556789999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCch----hhhh---cCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHH-----H
Q 008754 384 ITCFLICTAMYAGVAYMGYTMFGESTL----SQFT---LNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSL-----E 451 (554)
Q Consensus 384 ~~s~~~~~~lY~~vg~~gy~~fG~~~~----~~i~---~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l-----~ 451 (554)
..++..+.++|++..+......+.+.. +++. .... ......+.....++..+.+..-.++...+.+ +
T Consensus 258 ~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ard 336 (499)
T PRK15049 258 NSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMG 336 (499)
T ss_pred HHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999877765544432211 1111 1111 1111223333333333333333333333332 3
Q ss_pred hhcCCC----CCCcchhh-hHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcC
Q 008754 452 ELIPSN----HLKSHIYA-ICIRTALVISTLLVGLAIP--FFGLVMSLIGSLLTMLVTLILPCLCFLSILRG 516 (554)
Q Consensus 452 ~~l~~~----~~~~~~~~-~~~~~~~~~~~~~vA~~vp--~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~ 516 (554)
+.+|+. +++..+.+ +++..++.+...++....| .++.++++ +..+..+.|++++++++++||+
T Consensus 337 g~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~--~~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 337 GSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNF--ASLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred CCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 334422 11111211 2222222222222222233 36666666 4456678999999999988753
No 22
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.77 E-value=7.4e-16 Score=175.74 Aligned_cols=241 Identities=13% Similarity=0.138 Sum_probs=166.4
Q ss_pred CCCCCHHHHHHHH-HHhhhhhhhchhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-CCCCCChHHHHHHHhc
Q 008754 161 SRQSSYAQALLNG-MNVLCGVGILSTP-YAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS-EPGLETYPDIGQAAFG 236 (554)
Q Consensus 161 ~~~~s~~~a~~~l-i~~iiG~GiLslP-~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~-~~~~~~y~~l~~~~~G 236 (554)
.++.+++++++.. +.+|+|+|++..| +.+.++|.. ++++++++++++..++.-+.+...+ .+....-..+..++||
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisralG 154 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLG 154 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhC
Confidence 6789999999988 9999999988777 667899977 7888888888888888888776644 3222222234889999
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHH
Q 008754 237 TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGV 316 (554)
Q Consensus 237 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~ 316 (554)
+..++.+.+++++.....+..|.+.+++++..+++...............++++++.+++..+++. ..+...+++.+.+
T Consensus 155 p~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~-Gvk~~ak~q~vl~ 233 (953)
T TIGR00930 155 PEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFA-GMEWENKAQVLFL 233 (953)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 999999999999888888899999999999888753211000001111233444444444444433 6676666666555
Q ss_pred HHHHHHHHHHHhhhccccc-----c---cCC----C----CCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-c
Q 008754 317 IASILVVLCLFWVGLVDQV-----N---IHS----K----GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-F 379 (554)
Q Consensus 317 ~~~i~~~~~~~~~~~~~~~-----~---~~~----~----~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~ 379 (554)
++.++.++.+++.++.... + +.. . .......++...++++.+||.|+....++.+|+|||+| +
T Consensus 234 vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~I 313 (953)
T TIGR00930 234 VIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKAI 313 (953)
T ss_pred HHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhh
Confidence 5444443333333222110 0 000 0 00111223777888888999999999999999999998 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 008754 380 PKVLITCFLICTAMYAGVAYMGY 402 (554)
Q Consensus 380 ~~~~~~s~~~~~~lY~~vg~~gy 402 (554)
|+++..++.+++++|+++.++..
T Consensus 314 Pratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 314 PKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986443
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.77 E-value=2e-15 Score=161.45 Aligned_cols=235 Identities=11% Similarity=0.125 Sum_probs=144.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHH---HHHHHHHHhhhhCCCCCChHHHHHHHhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSF---YTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~---~t~~~L~~~~~~~~~~~~y~~l~~~~~G~ 237 (554)
+|+++.+++++..++.+||+|++.+|..+.+.|...+...++.++... ++...|....++.++.+.| .++++||
T Consensus 7 ~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~---~~~~~g~ 83 (445)
T PRK10644 7 AHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAY---ARRCFGP 83 (445)
T ss_pred CCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHH---HHHHcCc
Confidence 789999999999999999999999998876666433333344344444 4444444444444555555 9999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
...++..+..++.......+.......++..+++... ..+. .....++..+++.-+. .+..+...+++.+..+
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~ln-~~gvk~~~~i~~i~~~ 156 (445)
T PRK10644 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---DPLV---LTITCVVVLWIFVLLN-IVGPKMITRVQAVATV 156 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CcHH---HHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHH
Confidence 9999999887776544444444445556665554321 0100 0111111111222222 2355666666655544
Q ss_pred HHHHHHHHHHhhhc--ccccccCCCC---CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHHH
Q 008754 318 ASILVVLCLFWVGL--VDQVNIHSKG---TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICT 391 (554)
Q Consensus 318 ~~i~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~~ 391 (554)
..++.++.++..+. .+...+.... ...++..+..++....|+|.|.+....+.+|+|||+| .||++..++.+++
T Consensus 157 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~ 236 (445)
T PRK10644 157 LALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAA 236 (445)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHH
Confidence 43332222222221 1111111110 0112345556777899999999999999999999987 9999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 008754 392 AMYAGVAYMGYTMF 405 (554)
Q Consensus 392 ~lY~~vg~~gy~~f 405 (554)
++|+++.+......
T Consensus 237 v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 237 VCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999988755443
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=99.76 E-value=4.1e-15 Score=159.35 Aligned_cols=234 Identities=15% Similarity=0.125 Sum_probs=158.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTP-YAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP-~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+++..+..+..++.+||+|++..| .+++.+|...++..++.+++.+..+..+.|...+.|....+.+.+++++|++.
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~~ 88 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFF 88 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHH
Confidence 78899999999999999999999999 56678887555566677777777888888887777777778888999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHH----H
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG----G 315 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~----~ 315 (554)
++++.+..++.....+.......+.++..+++..+ ...+.++..+++..+.. +..+....+... .
T Consensus 89 Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~----------~~~~~~~~~~~~~~lN~-~gv~~~~~~e~~~~~~k 157 (461)
T PRK10746 89 GYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMA----------QWIPALIAVALVALANL-AAVRLYGEIEFWFAMIK 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc----------hHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 99999998887666666666777777777665321 12223332233322332 244444433322 2
Q ss_pred HHHHHHHHHH---HHhhhcccc---cccC---CC--CCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHH
Q 008754 316 VIASILVVLC---LFWVGLVDQ---VNIH---SK--GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVL 383 (554)
Q Consensus 316 ~~~~i~~~~~---~~~~~~~~~---~~~~---~~--~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~ 383 (554)
++.++.++++ ++..+.... .++. +. ..+.++.++..++....|+|.|.+.+....+|+|||+| +||++
T Consensus 158 i~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai 237 (461)
T PRK10746 158 VTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAV 237 (461)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 1111111111 111111111 1111 11 11223567788999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008754 384 ITCFLICTAMYAGVAYMGYTMF 405 (554)
Q Consensus 384 ~~s~~~~~~lY~~vg~~gy~~f 405 (554)
..++..+.++|++..++.....
T Consensus 238 ~~~~~~i~~~yv~~~~~~~~~~ 259 (461)
T PRK10746 238 GKVLWRILIFYVGAIFVIVTIF 259 (461)
T ss_pred HHHHHHHHHHHHHHHHHHeeee
Confidence 9999999999998755544443
No 25
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.75 E-value=3.6e-15 Score=159.78 Aligned_cols=234 Identities=13% Similarity=0.183 Sum_probs=161.2
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTP-YAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP-~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+++..+.++..++.+||+|++.+| .+++.+|..+++..++.+++.+..+..+.|...+.|....+.+.+++.+|++.
T Consensus 11 ~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~~ 90 (452)
T TIGR01773 11 PNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRWA 90 (452)
T ss_pred hCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHH
Confidence 89999999999999999999999999 66788887777777778888877788888877677766677788999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
.++..+..++.....+.......+.++..+++..+ ...+.++..++...+. .+..+...++.....+..
T Consensus 91 gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~n-~~gv~~~~~~~~~~~~~k 159 (452)
T TIGR01773 91 GFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIP----------LWLFSLILTIVLTLTN-LYSVKSYGEFEFWFALIK 159 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHH-HHhcchhhHHHHHHHHHH
Confidence 99999998887666666777777777777665321 1222222222222233 225555555544333322
Q ss_pred HHHH----HHHHh--hhcccc---ccc---CC-CC-CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHH
Q 008754 320 ILVV----LCLFW--VGLVDQ---VNI---HS-KG-TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLI 384 (554)
Q Consensus 320 i~~~----~~~~~--~~~~~~---~~~---~~-~~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~ 384 (554)
++.+ +..++ .+.... .++ .. .+ .+.++.++..++....|+|.|.+.+..+.+|+|||+| .||++.
T Consensus 160 i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~ 239 (452)
T TIGR01773 160 VIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATN 239 (452)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHH
Confidence 2211 11111 111110 001 10 11 1223346788999999999999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008754 385 TCFLICTAMYAGVAYMGYTMF 405 (554)
Q Consensus 385 ~s~~~~~~lY~~vg~~gy~~f 405 (554)
.+...+.++|++..++.....
T Consensus 240 ~~~~~~~~~y~l~~~~~~~~~ 260 (452)
T TIGR01773 240 SVIWRIIVFYLGSIFIVVALL 260 (452)
T ss_pred HHHHHHHHHHHHHHHHHeeEe
Confidence 989999999998766544443
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.75 E-value=3.3e-15 Score=160.62 Aligned_cols=233 Identities=12% Similarity=0.179 Sum_probs=154.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTP-YAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP-~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+++.++.++..++.+||+|++..| .+++++|...+...++.+++.+.....+.|.....+....+.+.+++++|+..
T Consensus 19 ~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~~ 98 (469)
T PRK11049 19 RRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWA 98 (469)
T ss_pred hccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcHH
Confidence 88999999999999999999999988 57788887555566667777766666777766444444466778999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
.+++.|..++.......+.....+.++..+++... ...+.+++.+++..+... ..+...+++.+..+..
T Consensus 99 gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~----------~~~~~~~~~~~~~~iN~~-g~~~~~~i~~~~~~~k 167 (469)
T PRK11049 99 GYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLS----------DWVASLAVVLLLLSLNLA-TVKMFGEMEFWFAMIK 167 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 99999998876654445555566667766654321 122223323333333322 5565656554433332
Q ss_pred HHHHHHHHhhhc------cccc-----ccC----CCC-CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhH
Q 008754 320 ILVVLCLFWVGL------VDQV-----NIH----SKG-TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKV 382 (554)
Q Consensus 320 i~~~~~~~~~~~------~~~~-----~~~----~~~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~ 382 (554)
+..++.++..+. .... .+. ..+ .+.++.++..++....|+|.|++.+....+|+|||+| +||+
T Consensus 168 l~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPra 247 (469)
T PRK11049 168 IVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRA 247 (469)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHH
Confidence 222222111111 0000 010 000 1223456788999999999999999999999999997 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008754 383 LITCFLICTAMYAGVAYMGYTM 404 (554)
Q Consensus 383 ~~~s~~~~~~lY~~vg~~gy~~ 404 (554)
+..+...+.++|++..+..+..
T Consensus 248 i~~~~~~~~~~y~l~~~~~~~~ 269 (469)
T PRK11049 248 INSIPIRIIMFYVFALIVIMSV 269 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHeee
Confidence 9888888888888777665543
No 27
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.75 E-value=3.7e-15 Score=160.37 Aligned_cols=235 Identities=10% Similarity=0.098 Sum_probs=149.6
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHH-HHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~-a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~ 238 (554)
+|+++.++.++..++.+||+|++.+|. +.+.+|.. .++..++.+++.+.....+.|...+.|....+....++++|+.
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~~ 92 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPA 92 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcChH
Confidence 788999999999999999999999995 45788865 4555667777777777777777666666556667799999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
..+++.+..++.....+.......+..+..+++... ...+.++..+++..+. .+..+....++....+.
T Consensus 93 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~~~~ 161 (471)
T PRK11387 93 TGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVP----------VWPWCLLFCALIFGLN-VVSTRFFAEGEFWFSLI 161 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCc----------HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence 999999988876555554444444545544443211 1122222222222232 23555554443222222
Q ss_pred HHHH----HHHHHh--hhc-c-cccc----cCC---CCC-ccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chh
Q 008754 319 SILV----VLCLFW--VGL-V-DQVN----IHS---KGT-PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPK 381 (554)
Q Consensus 319 ~i~~----~~~~~~--~~~-~-~~~~----~~~---~~~-~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~ 381 (554)
.++. ++..++ .+. . .+.+ ++. .+. +.+..++..++....|+|.|.+.+....+|+|||+| +||
T Consensus 162 ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr 241 (471)
T PRK11387 162 KVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPV 241 (471)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHH
Confidence 1111 111111 110 0 0000 000 000 111224667778889999999999999999999997 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 008754 382 VLITCFLICTAMYAGVAYMGYTMFG 406 (554)
Q Consensus 382 ~~~~s~~~~~~lY~~vg~~gy~~fG 406 (554)
++..++.++.++|+++.+......+
T Consensus 242 Ai~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 242 AIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999999999998776554443
No 28
>TIGR00909 2A0306 amino acid transporter.
Probab=99.75 E-value=1.5e-15 Score=161.72 Aligned_cols=241 Identities=17% Similarity=0.210 Sum_probs=161.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAA-KEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~-~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+++.++.++..++.++|+|++.+|... ..+|...++..++.+++.......+.+...+.|+.....+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 57899999999999999999999999554 45565555555666666666666666665555543334444889999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCcccc----chh--HHHHHHHHHHHhhhccccCCchhhHhHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYL----NSH--HLFALMTTLAVLPTCWLRDLTVLSYISA 313 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~----~~~--~~~~iv~~li~~pl~~~~~l~~l~~~s~ 313 (554)
+++..+..++.....+..+....++++..+++....+.+.+.. +.. ....++ .++++-....+..+...+++.
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~l~~~g~~~~~~~~~ 160 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALL-IVLFLTYILYLGAKESGKVND 160 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHH-HHHHHHHHHHhCcHHHHHHHH
Confidence 9999999888877777888888888888777532111111000 000 011122 222222223447777777777
Q ss_pred HHHHHHHHHHHHHHhhhccc--ccccCCCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHH
Q 008754 314 GGVIASILVVLCLFWVGLVD--QVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLIC 390 (554)
Q Consensus 314 ~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~ 390 (554)
+..+..+..++.++..+... ..++.+ ..+.++.++..++....|+|.|++....+.+|+|||+| .+|++..+..++
T Consensus 161 v~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~ 239 (429)
T TIGR00909 161 ILVVLKVAALLLFAALGAIHFASNNYTP-FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVV 239 (429)
T ss_pred HHHHHHHHHHHHhhhHHHhhCcHHhcCC-CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHH
Confidence 66655554443322222211 111221 11234557788899999999999999999999999976 899999999999
Q ss_pred HHHHHHHHHHHHH
Q 008754 391 TAMYAGVAYMGYT 403 (554)
Q Consensus 391 ~~lY~~vg~~gy~ 403 (554)
.++|+++.+....
T Consensus 240 ~v~Yil~~~~~~~ 252 (429)
T TIGR00909 240 TLLYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998876554
No 29
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.74 E-value=6.4e-15 Score=157.75 Aligned_cols=229 Identities=12% Similarity=0.137 Sum_probs=154.6
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~-a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+++.++..+..++.+||+|++..|. +.+++|...++..++.+++.+..+..+.|...+.|....+....++.+|+..
T Consensus 11 ~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~~ 90 (456)
T PRK10238 11 KRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFA 90 (456)
T ss_pred hccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcHH
Confidence 899999999999999999999999995 4567776455556777777777778888887777777777778999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
.++..+..++.....+.......+.++..+++..+ ...+.++..+++..+... ..+....++....+..
T Consensus 91 gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~i~~~~~~~lN~~-gv~~~~~~~~~~~~ik 159 (456)
T PRK10238 91 GFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIP----------TWVSAAVFFVVINAINLT-NVKVFGEMEFWFAIIK 159 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 99999999888777777777778888876665321 112222222333333322 4455555554333322
Q ss_pred HHHHH-----HHHh-hhccccc--cc----CCCCC-ccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHH
Q 008754 320 ILVVL-----CLFW-VGLVDQV--NI----HSKGT-PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLIT 385 (554)
Q Consensus 320 i~~~~-----~~~~-~~~~~~~--~~----~~~~~-~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~ 385 (554)
+..++ .+++ .+..... .+ +..+. +..+.++..++....|+|.|.+.+....+|+|||+| +||++..
T Consensus 160 i~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~ 239 (456)
T PRK10238 160 VIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQ 239 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHH
Confidence 22111 1111 1111110 01 00111 122345567788899999999999999999999997 9999998
Q ss_pred HHHHHHHHHHHHHHH
Q 008754 386 CFLICTAMYAGVAYM 400 (554)
Q Consensus 386 s~~~~~~lY~~vg~~ 400 (554)
++..+.++|+.....
T Consensus 240 ~~~~i~~~y~~~~~~ 254 (456)
T PRK10238 240 VIYRILIFYIGSLAV 254 (456)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888765443
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.74 E-value=6.5e-15 Score=158.35 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=152.3
Q ss_pred CCCCHHHHHHHHHHhhhhhhhchhHHHH-HhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-ChHHHHHHHhchh
Q 008754 162 RQSSYAQALLNGMNVLCGVGILSTPYAA-KEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLE-TYPDIGQAAFGTA 238 (554)
Q Consensus 162 ~~~s~~~a~~~li~~iiG~GiLslP~a~-~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~-~y~~l~~~~~G~~ 238 (554)
|+++.++.++..++++||+|++.+|... +.+|.. .++..++.++........+.|...+.|+.. ...+..+++||++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 5789999999999999999999999765 566754 445566666666666666666665555432 3444499999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
.+++..+..++........+......++..+++..... ... ......++...++.-+. .+..+...+++.+..+.
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~-~~~~~~~~~~~~~~~ln-~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG---NNP-PSIIGASVLLWCVHFLV-LRGVEGAAFINTITTIA 155 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC---CcH-HHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHH
Confidence 99999999887665555666666666666666533210 000 01111111111222222 34666666666555444
Q ss_pred HHHHHHHHHhhh---cccc-c--c-cCCC--CC--ccccCchhHHHHHHHHhhccccchhhHHhhccCCCCchhHHHHHH
Q 008754 319 SILVVLCLFWVG---LVDQ-V--N-IHSK--GT--PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCF 387 (554)
Q Consensus 319 ~i~~~~~~~~~~---~~~~-~--~-~~~~--~~--~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~~~~s~ 387 (554)
.++.++.++..+ ...+ . + +... +. ...+.++..++....|+|.|++....+.+|.||+++.+|++..++
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~~ 235 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIGL 235 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHHH
Confidence 333222221111 1110 0 0 1100 00 111234557788899999999999999999999777999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 008754 388 LICTAMYAGVAYMGYTMFG 406 (554)
Q Consensus 388 ~~~~~lY~~vg~~gy~~fG 406 (554)
.+++++|+++.+..+...+
T Consensus 236 ~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 236 IGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999999887765443
No 31
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.74 E-value=1.1e-15 Score=155.50 Aligned_cols=339 Identities=17% Similarity=0.229 Sum_probs=233.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|.++..+--+..++..||+| .+..-.+++.+|.--++..+++|++.++-+..|+|...+.|...++.+.+++++|+++
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~A 91 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWA 91 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchH
Confidence 788999999999999999999 5566688899998877888899999999999999999888888999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhcc--ccCCchhhH-hHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCW--LRDLTVLSY-ISAGGV 316 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~--~~~l~~l~~-~s~~~~ 316 (554)
+++..|.+++.....+++-+..++.+++.++|+.+ ...++++..+++..+.+ .|....+-+ ++.+-+
T Consensus 92 gf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP----------~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV 161 (462)
T COG1113 92 GFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP----------QWVFALAAVVLLLAVNLISVKVFGELEFWFALIKV 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998774 33555555555444433 333333322 233333
Q ss_pred HHHH---HHHHHHHhhhccccc---c----cCC-CCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHH
Q 008754 317 IASI---LVVLCLFWVGLVDQV---N----IHS-KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLI 384 (554)
Q Consensus 317 ~~~i---~~~~~~~~~~~~~~~---~----~~~-~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~ 384 (554)
.+++ .+.+.++..++..+. + ++. +-.+.++.++..++-+.+|||.|.+.+-....|-|||+| .||++.
T Consensus 162 ~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin 241 (462)
T COG1113 162 AAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAIN 241 (462)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHh
Confidence 3332 233333333333221 1 111 123667888999999999999999999999999999998 788766
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHhcCCchhhhh-----cCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhc
Q 008754 385 TCFLICTAMY-----AGVAYMGYTMFGESTLSQFT-----LNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELI 454 (554)
Q Consensus 385 ~s~~~~~~lY-----~~vg~~gy~~fG~~~~~~i~-----~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l 454 (554)
.-..=..++| +++.+..+-.++++ .+++. ..+| ....+.+...+...+.++.-.++...+.+..+-
T Consensus 242 ~V~~RI~iFYvgsl~vi~~l~PW~~~~~~-~SPFV~~f~~iGi~---~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la 317 (462)
T COG1113 242 SVIWRILIFYVGSLFVILSLYPWNQIGED-GSPFVTVFSLIGIP---FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLA 317 (462)
T ss_pred hhhHHHHHHHHHHHHHHheeccccccCCC-CCcHHHHHHHcCCc---ccccceeEEEeechhhcccccccccchHHHHHh
Confidence 5555444444 44555556555554 23332 2222 122233333333444445555566666666553
Q ss_pred CCCC---------CCc-chhhhHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHhhHHHHhhhhHHHHHHhc
Q 008754 455 PSNH---------LKS-HIYAICIRTALVISTLLVGLAIPF--FGLVMSLIGSLLTMLVTLILPCLCFLSILR 515 (554)
Q Consensus 455 ~~~~---------~~~-~~~~~~~~~~~~~~~~~vA~~vp~--~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~ 515 (554)
.+.+ ++. ....+.+..+...++.++.+..|. |..+.+..+ ...+..+.+-.++++|.||
T Consensus 318 ~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~--~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 318 KQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSG--LGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred hcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 2221 111 133466777888888888888883 666666644 4456778888899999887
No 32
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.73 E-value=5.1e-15 Score=153.84 Aligned_cols=333 Identities=13% Similarity=0.211 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHhhhhhhhchhHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHH
Q 008754 163 QSSYAQALLNGMNVLCGVGILSTPYAAKE-GGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRI 241 (554)
Q Consensus 163 ~~s~~~a~~~li~~iiG~GiLslP~a~~~-~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~ 241 (554)
+.|..|.++.++++++|+|++.+|....+ +|--+.+..++.++++......+.+...+.|+. +..++.++++||+.++
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGR 80 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHH
Confidence 57899999999999999999999987643 332255556666777777777777777677764 8999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhc-cccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHH
Q 008754 242 AVSVILYAELYACCIEYIILESDNLSSLF-PNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASI 320 (554)
Q Consensus 242 ~~~i~~~~~~~g~~~~y~i~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i 320 (554)
++.+.+.+.....+.......++.+...+ +.. +.....+..+++.-....+.++...+++.+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t-----------p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYLLPRT-----------PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99998887777776666667777776543 221 112222222222223334588888888876665554
Q ss_pred HHH-HHHHhhhccc-ccccCCCCCccccCchhHHHH-HHHHhhccccchhhHHhhccCCCCchhHHHHHHHHHHHHHHHH
Q 008754 321 LVV-LCLFWVGLVD-QVNIHSKGTPLNLATLPVAIG-LYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGV 397 (554)
Q Consensus 321 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~-~~~faf~g~~~i~~i~~emk~p~~~~~~~~~s~~~~~~lY~~v 397 (554)
... +.+....... +...-.+....++.++..+.- ...++|.|...+..+..++|||++.+|+...+..+++++|..+
T Consensus 150 ~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~ 229 (359)
T TIGR00912 150 ILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILT 229 (359)
T ss_pred HHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHH
Confidence 442 2222222111 111111111234445444443 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhhh---------hcCCCc-hhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCCcchhhhH
Q 008754 398 AYMGYTMFGESTLSQF---------TLNMPQ-DLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAIC 467 (554)
Q Consensus 398 g~~gy~~fG~~~~~~i---------~~n~p~-~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~ 467 (554)
.+.....+|.+..++. ..+.++ -.....+......+..+.+..+.++.....+.+.++.++.+. ..
T Consensus 230 ~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 305 (359)
T TIGR00912 230 TFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSI----LI 305 (359)
T ss_pred HHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch----hH
Confidence 9998888886544321 111220 012333445555667778888888999889998887754431 11
Q ss_pred HHHHHHHHHHHHHhhcch-hHHH---HHHHHHHHhhHHHHhhhhHHHHHHhc
Q 008754 468 IRTALVISTLLVGLAIPF-FGLV---MSLIGSLLTMLVTLILPCLCFLSILR 515 (554)
Q Consensus 468 ~~~~~~~~~~~vA~~vp~-~~~v---i~l~Gs~~~~~~~~ilP~l~~l~~~~ 515 (554)
... ....+.++. .|+ ...+ ....+ ..+....+++|.++++...-
T Consensus 306 ~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~i 353 (359)
T TIGR00912 306 LPV--LMVIFSISF-FPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKI 353 (359)
T ss_pred HHH--HHHHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 111 112223332 343 3222 12222 33455677889987776543
No 33
>PRK10836 lysine transporter; Provisional
Probab=99.73 E-value=2e-14 Score=155.40 Aligned_cols=235 Identities=11% Similarity=0.129 Sum_probs=147.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHH-HHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~-a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~ 238 (554)
+|+++.++.++..++.+||+|++.+|. +.+++|.. .++..++.++++...+..+.|...+.|.........++++|+.
T Consensus 14 ~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~~ 93 (489)
T PRK10836 14 RRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEG 93 (489)
T ss_pred cccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcChH
Confidence 789999999999999999999999995 66788876 6777778888888888888888777777666777789999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHH--
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGV-- 316 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~-- 316 (554)
.++++.|.+++...............++..+++.. . ...+..+..+++..+.+. +.+....+.....
T Consensus 94 ~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~----~------~~~~~~~~~~~~~~lN~~-gv~~~~~~~~~~~~~ 162 (489)
T PRK10836 94 FGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT----P------GWIWSALFLGVIFLLNYI-SVRGFGEAEYWFSLI 162 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----c------hHHHHHHHHHHHHHHHHH-cchhhhhhHHHHHHH
Confidence 99999988776543333322233333344443321 1 111222222222223222 4443333322111
Q ss_pred --HHHHHHHH--HHHhhhcccc---c---ccCCC--CCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHH
Q 008754 317 --IASILVVL--CLFWVGLVDQ---V---NIHSK--GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVL 383 (554)
Q Consensus 317 --~~~i~~~~--~~~~~~~~~~---~---~~~~~--~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~ 383 (554)
...+.+++ .++..+...+ . ++... +....+..+..++....|+|.|++.+..+.+|+|||+| .||++
T Consensus 163 ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi 242 (489)
T PRK10836 163 KVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAV 242 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHH
Confidence 11111111 1111221111 0 11110 11112233444455567999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 008754 384 ITCFLICTAMYAGVAYMGYTMFG 406 (554)
Q Consensus 384 ~~s~~~~~~lY~~vg~~gy~~fG 406 (554)
..++..+.++|++..+......+
T Consensus 243 ~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 243 RQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999998776554443
No 34
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.73 E-value=1.8e-14 Score=155.20 Aligned_cols=240 Identities=12% Similarity=0.078 Sum_probs=149.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHH-hhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCChHHHHHHHhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAK-EGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPG-LETYPDIGQAAFGT 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~-~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~-~~~y~~l~~~~~G~ 237 (554)
+|++|.+++++..++.++|+|++.+|..+. .+|.. .++..++.+++.......+.|...+.|+ .....+..++.+||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 678999999999999999999999998775 44432 3344455555555555555555444444 33333347999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
+.+++..+.+++........+......++..+++..... ..+ ....+.++..++...+. .++++...+++.+..+
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~-~~~---~~~~~~~~~~~~~~~ln-~~Gi~~~~~i~~~~~~ 160 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG-NPV---PSILGASVLLWVFTFLV-LRGVRQAAFINTITTI 160 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CcH---HHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHH
Confidence 999999998877655556666666667777777632110 000 01112222222222233 4477777777666554
Q ss_pred HHHHHHHHHHhhhc--ccccc----cCCCCC---ccccCchhHHHHHHHHhhccccchhhHHhhccCCCCchhHHHHHHH
Q 008754 318 ASILVVLCLFWVGL--VDQVN----IHSKGT---PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFL 388 (554)
Q Consensus 318 ~~i~~~~~~~~~~~--~~~~~----~~~~~~---~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~~~~s~~ 388 (554)
..++.++.++..+. .+... +.+... ...+..+..++....|+|.|++....+.+|+||+++.||++..+..
T Consensus 161 ~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~~~ 240 (473)
T TIGR00905 161 AKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLGTL 240 (473)
T ss_pred HHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHHHH
Confidence 43333222222111 11111 111101 1123456677888999999999999999999994449999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008754 389 ICTAMYAGVAYMGYTMF 405 (554)
Q Consensus 389 ~~~~lY~~vg~~gy~~f 405 (554)
+++++|++.........
T Consensus 241 i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 241 GALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999887655433
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.72 E-value=4.6e-14 Score=151.36 Aligned_cols=231 Identities=14% Similarity=0.190 Sum_probs=153.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYA-AKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a-~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+++.++.++..++.+||+|++.+|.. ++.+|...++..++.+++.......+.|...+.|.........++.+||..
T Consensus 8 ~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~ 87 (457)
T PRK10580 8 KRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLA 87 (457)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHH
Confidence 7889999999999999999999999954 567786566667777777777777778877666665566667899999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
++++.+..++.....+.......+.++..+++..+ ...+.++..+++..+. .+..+....+..+..+..
T Consensus 88 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~ln-~~gv~~~~~~~~~~~~~~ 156 (457)
T PRK10580 88 GYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIWVLSVVLIICAVN-LMSVKVFGELEFWFSFFK 156 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHHHHH-HccchhHHHHHHHHHHHH
Confidence 99999988776655555555566666666654321 1223333233333333 335565655554332222
Q ss_pred HHHHHH-------HHhhhccc--c-cc----cCCCC-CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHH
Q 008754 320 ILVVLC-------LFWVGLVD--Q-VN----IHSKG-TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVL 383 (554)
Q Consensus 320 i~~~~~-------~~~~~~~~--~-~~----~~~~~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~ 383 (554)
+..++. ++..+..+ + .+ ++..+ .+.++.++..++....|+|.|.+......+|+|||+| .||++
T Consensus 157 ~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi 236 (457)
T PRK10580 157 VATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAI 236 (457)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHH
Confidence 211111 11111111 1 01 11111 1223446777888999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008754 384 ITCFLICTAMYAGVAYMGY 402 (554)
Q Consensus 384 ~~s~~~~~~lY~~vg~~gy 402 (554)
..+...++++|++..+...
T Consensus 237 ~~~~~~~~~~y~~~~~~~~ 255 (457)
T PRK10580 237 NSVPMRILVFYVGTLFVIM 255 (457)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9888888889988765543
No 36
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.71 E-value=3.6e-14 Score=153.25 Aligned_cols=229 Identities=11% Similarity=0.078 Sum_probs=153.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhH-HHHHhhcHHH-HHHHHHHHHHHHHHHHHHHHhhhhCC-CCCChHHHHHHHhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTP-YAAKEGGWFG-LLILVAFGVLSFYTGILLRRCLDSEP-GLETYPDIGQAAFGT 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP-~a~~~~G~~g-~ill~~~~~ls~~t~~~L~~~~~~~~-~~~~y~~l~~~~~G~ 237 (554)
+|+++.++..+..++.+||+|++..| .+.+.+|..+ ++..++.+++.+.....+.|...+.| ....|....++++|+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 36789999999999999999999988 6667888764 55567777777777777788776676 334788889999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
...+++.+.+++.....+.......+.++..+.+... ...+..+..+++..+. .+..+...+++.+..+
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~in-~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVN----------PAVWIAIFYVFIVIIN-LFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHH
Confidence 9999999998887766667777777777765543211 1122222222222222 3366666665544332
Q ss_pred HHHHHH----HHHHh--hhcccccc------cCC-CCCcc-----ccCchhHHHHHHHHhhccccchhhHHhhccCCCC-
Q 008754 318 ASILVV----LCLFW--VGLVDQVN------IHS-KGTPL-----NLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ- 378 (554)
Q Consensus 318 ~~i~~~----~~~~~--~~~~~~~~------~~~-~~~~~-----~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~- 378 (554)
..++.+ +..+. .+...... +.. ..... .+.++..++....|+|.|.+....+.+|+|||+|
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 222111 11111 11110000 000 01111 1345677888899999999999999999999997
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 008754 379 FPKVLITCFLICTAMYAGVAYM 400 (554)
Q Consensus 379 ~~~~~~~s~~~~~~lY~~vg~~ 400 (554)
+||++..+..++.++|++..+.
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997654
No 37
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.71 E-value=2.2e-14 Score=155.65 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=147.0
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHH-HHhhcHHHH--HHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYA-AKEGGWFGL--LILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a-~~~~G~~g~--ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~ 237 (554)
+|+.+.++.++..++.++|+|++.+|.. ++.+|..|. +..++.+++....+..+.|...+.|.........++.+|+
T Consensus 41 ~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g~ 120 (501)
T TIGR00911 41 KKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGP 120 (501)
T ss_pred CccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhCC
Confidence 7899999999999999999999999965 566775433 3344555555555555555554444333333347889999
Q ss_pred hhHHHHHHHHHH-HHhHHHHHHHHHHHhhh-hhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHH
Q 008754 238 AGRIAVSVILYA-ELYACCIEYIILESDNL-SSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGG 315 (554)
Q Consensus 238 ~g~~~~~i~~~~-~~~g~~~~y~i~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~ 315 (554)
...++..+..++ ...+.+..+....++++ ..+++.... ..+. ...+.++..++...+. .+.++...+++.+.
T Consensus 121 ~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~--~~~~---~~~i~~~~i~~~~~ln-~~Gvk~~~~~~~i~ 194 (501)
T TIGR00911 121 LLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEV--PEWA---IRLVAVLCVLLLTLVN-CLSVKWATRVQDIF 194 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--chHH---HHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence 999988876544 22344445555556654 334432211 1110 1122222222222233 33666666666555
Q ss_pred HHHHHHHHHHHHhhh---ccc-ccc-cCCC----CCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHH
Q 008754 316 VIASILVVLCLFWVG---LVD-QVN-IHSK----GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLIT 385 (554)
Q Consensus 316 ~~~~i~~~~~~~~~~---~~~-~~~-~~~~----~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~ 385 (554)
.+..++.++.++..+ ... +.. .++. ....++.++..++....|+|.|++.+..+.+|+|||+| .||++..
T Consensus 195 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~ 274 (501)
T TIGR00911 195 TACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIII 274 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHH
Confidence 544443322222221 111 110 1111 11123456777889999999999999999999999987 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008754 386 CFLICTAMYAGVAYMGYTMF 405 (554)
Q Consensus 386 s~~~~~~lY~~vg~~gy~~f 405 (554)
+..+++++|+++.+......
T Consensus 275 s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 275 SMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999876655444
No 38
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.70 E-value=2.4e-14 Score=156.31 Aligned_cols=240 Identities=14% Similarity=0.147 Sum_probs=156.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHH--HhhcHHHHHHHHHHHHHHH---HHHHHHHHhhhhCCCCCChHHHHHHHh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAA--KEGGWFGLLILVAFGVLSF---YTGILLRRCLDSEPGLETYPDIGQAAF 235 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~--~~~G~~g~ill~~~~~ls~---~t~~~L~~~~~~~~~~~~y~~l~~~~~ 235 (554)
+|+++.++.++..++.++|+|++.+|... ..+|...++.+++.++.+. ++...+....++.++.+.| .++.+
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y---~~~~~ 103 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLY---SYVTV 103 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceee---HHHHh
Confidence 78899999999999999999999999543 3577543334444444444 4445555545555666777 78889
Q ss_pred chhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhcccc----ccC-----CCccccchhHHHHHHHHHHHhhhccccCCc
Q 008754 236 GTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNA----HLS-----FGGFYLNSHHLFALMTTLAVLPTCWLRDLT 306 (554)
Q Consensus 236 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~----~~~-----~~~~~~~~~~~~~iv~~li~~pl~~~~~l~ 306 (554)
|+...+++.|..++.....+.......+.++..++... ... ..+.. ......+++..+++. ....++.+
T Consensus 104 G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~-~~~~~~a~~ii~l~~-~ln~~Gik 181 (557)
T TIGR00906 104 GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLA-EYPDFFAVCLILLLA-VLLSFGVK 181 (557)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCccc-ccchHHHHHHHHHHH-HHHHhchh
Confidence 99999999999888766666655566666666554321 000 00100 011222222222222 23345788
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhhhcc--cccccCC-------CCCccccCchhHHHHHHHHhhccccchhhHHhhccCCC
Q 008754 307 VLSYISAGGVIASILVVLCLFWVGLV--DQVNIHS-------KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPN 377 (554)
Q Consensus 307 ~l~~~s~~~~~~~i~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~ 377 (554)
..++++.+..+..+..++.++..+.. +..++.. ...+.++.++..++....|+|.|.+.+....+|+|||+
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 88887776665555444443333332 1112210 11123445678888999999999999999999999999
Q ss_pred C-chhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008754 378 Q-FPKVLITCFLICTAMYAGVAYMGYTMF 405 (554)
Q Consensus 378 ~-~~~~~~~s~~~~~~lY~~vg~~gy~~f 405 (554)
| +|+++..++.+++++|+++.+.-..+.
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~v 290 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMM 290 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8 999999999999999999887654433
No 39
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.69 E-value=5.9e-14 Score=149.91 Aligned_cols=222 Identities=14% Similarity=0.169 Sum_probs=147.2
Q ss_pred HHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHHHHHHHHHH
Q 008754 172 NGMNVLCGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAE 250 (554)
Q Consensus 172 ~li~~iiG~GiLslP~-a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~~~~~ 250 (554)
..++.+||+|++..|. +++++|...++..++.+++....+..+.|...+.|.........++++|++.++++.+..++.
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~ 81 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF 81 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 3578899999999995 778999777777788888888888888888777776667777799999999999999998876
Q ss_pred HhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHHHHHHHHhh-
Q 008754 251 LYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWV- 329 (554)
Q Consensus 251 ~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~~~~~~~~~- 329 (554)
....+.......+..+..+.+... ...+.++..+++..+. .++.+....++.+..+..++.++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 82 WVLVIPLEANIAAMILHSWVPGIP----------IWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHhccccCc----------HHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 555555444445555544433211 1223333333333333 2355555555544433222222211111
Q ss_pred -----hcccc---cc----cCCCC-CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHHHHHHH
Q 008754 330 -----GLVDQ---VN----IHSKG-TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMYA 395 (554)
Q Consensus 330 -----~~~~~---~~----~~~~~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~~~lY~ 395 (554)
+.... .+ ++..+ .+..+.++..++....|+|.|++.+....+|+|||+| .||++..++..+.++|+
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yi 230 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYL 230 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 11100 00 00011 1223457889999999999999999999999999997 99999999999999999
Q ss_pred HHHHHHHHH
Q 008754 396 GVAYMGYTM 404 (554)
Q Consensus 396 ~vg~~gy~~ 404 (554)
+..++....
T Consensus 231 l~~~~~~~~ 239 (446)
T PRK10197 231 CSIFVVVAL 239 (446)
T ss_pred HHHHHHhee
Confidence 977764443
No 40
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.69 E-value=1.2e-13 Score=147.64 Aligned_cols=229 Identities=15% Similarity=0.137 Sum_probs=148.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFG-LLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g-~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+.+.++.+...++.++|......+.+++.+|+.+ ++..++.+++....+..+.|...+.|.........++.+|++.
T Consensus 6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~~ 85 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPWG 85 (442)
T ss_pred hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcHH
Confidence 788999999999999999954556678888999874 3344555555555555566655555554455566899999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
+++..+..++........+...+++++..+++... .....++..++...+. .+..+...+++....+..
T Consensus 86 gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~~~~~~~~~~~ln-~~g~~~~~~i~~~~~~~~ 154 (442)
T TIGR00908 86 GFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLAALVFYIVFIGIN-ILGVGEAAKLEFVVTAVA 154 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHH
Confidence 99999998887777777788888888888775431 1122222222222222 235555555554333322
Q ss_pred HHHHHHHHhhhcc--cccccCCC----CC---ccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHH
Q 008754 320 ILVVLCLFWVGLV--DQVNIHSK----GT---PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLI 389 (554)
Q Consensus 320 i~~~~~~~~~~~~--~~~~~~~~----~~---~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~ 389 (554)
++.++.++..... +..++... .. +..+.++..++....|+|.|++.+..+.+|+|||+| .||++..+..+
T Consensus 155 ~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~ 234 (442)
T TIGR00908 155 IIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILT 234 (442)
T ss_pred HHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHH
Confidence 2222211111111 10011100 00 112335667788889999999999999999999987 99999999999
Q ss_pred HHHHHHHHHHH
Q 008754 390 CTAMYAGVAYM 400 (554)
Q Consensus 390 ~~~lY~~vg~~ 400 (554)
+.++|+.+.+.
T Consensus 235 ~~~~~~~~~~~ 245 (442)
T TIGR00908 235 LLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHH
Confidence 99988877554
No 41
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.68 E-value=1.1e-13 Score=148.18 Aligned_cols=231 Identities=16% Similarity=0.120 Sum_probs=143.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHH-HhhcHH--HHHHHHHH---HHHHHHHHHHHHHhhhhCCCCCChHHHHHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAA-KEGGWF--GLLILVAF---GVLSFYTGILLRRCLDSEPGLETYPDIGQAA 234 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~-~~~G~~--g~ill~~~---~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~ 234 (554)
+|+.+.++.+...++.++|+|++.+|... ..+|.. .++..++. .+...++...|....++.+|.+.| .+++
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~~~ 83 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LKNA 83 (445)
T ss_pred cccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HHHh
Confidence 78999999999999999999999999764 455632 33333333 444445556666666666777777 7789
Q ss_pred hchhhHHHHHHHHHH-HHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHH
Q 008754 235 FGTAGRIAVSVILYA-ELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISA 313 (554)
Q Consensus 235 ~G~~g~~~~~i~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~ 313 (554)
+|+...++..+..+. ........+....++++..+++.. .. ......++..+++..+ -.+..+...+++.
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----~~---~~~~~~~~~~~~~~~l-n~~gv~~~~~v~~ 154 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID-----PL---LGKFIAAGLIIAFMLL-HLRSVEGGAAFQT 154 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hH---HHHHHHHHHHHHHHHH-HHhhhhHHHHHHH
Confidence 999999998886443 333344556666677766544321 00 0111222211222222 2345565556555
Q ss_pred HHHHHHHHHHHHHHhhhc--ccccccCCC-C----CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHH
Q 008754 314 GGVIASILVVLCLFWVGL--VDQVNIHSK-G----TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLIT 385 (554)
Q Consensus 314 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~-~----~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~ 385 (554)
+..+..++.++.++..+. ..+.++... . ...++.++..++....|+|.|++....+.+|+|||+| +||++..
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~ 234 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIG 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence 444433332222221111 111111111 0 0112445667788899999999999999999999997 8999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008754 386 CFLICTAMYAGVAYMGYT 403 (554)
Q Consensus 386 s~~~~~~lY~~vg~~gy~ 403 (554)
++.+++++|+++.+....
T Consensus 235 ~~~i~~~~Y~l~~~~~~~ 252 (445)
T PRK11357 235 SCLLVLVLYTLLALVISG 252 (445)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988776543
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.63 E-value=1.1e-12 Score=139.56 Aligned_cols=237 Identities=16% Similarity=0.161 Sum_probs=155.5
Q ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHH
Q 008754 164 SSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLS-FYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIA 242 (554)
Q Consensus 164 ~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls-~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~ 242 (554)
+|+++++...++.++|+|++..| .+...|...++..++.+++. ........|...+.+.........++++||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 47899999999999999999999 77677765444444444444 34444455554445555566667999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHH-H
Q 008754 243 VSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASI-L 321 (554)
Q Consensus 243 ~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i-~ 321 (554)
..+..++.....+..+....++++...+... ...+.. ......++..++...+. .+..+..++++....+..+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~i~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPD---LNPSPW-PQFLIAIILILLFTLLN-LLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGG---GTCSHH-HHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhccccc---cccccc-hheeeeecccccceEee-echhhhhhhhhhhhhhhhhhh
Confidence 9999988888878778888888887776321 111100 01222222222333333 3366677777665555444 2
Q ss_pred HHHHHHhhhcc--cccccC------CCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCCchhHHHHHHHHHHHH
Q 008754 322 VVLCLFWVGLV--DQVNIH------SKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAM 393 (554)
Q Consensus 322 ~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~~~~s~~~~~~l 393 (554)
.++.++..+.. +..... ....+..+..+..++...+|+|.|++..+.+.+|+|| |+.+|++..+..++.++
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~ 233 (426)
T PF13520_consen 155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAII 233 (426)
T ss_dssp HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHHH
Confidence 22222222211 111111 1222335566889999999999999999999999998 67999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 008754 394 YAGVAYMGYTMFGE 407 (554)
Q Consensus 394 Y~~vg~~gy~~fG~ 407 (554)
|.+..+......++
T Consensus 234 y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 234 YILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHTTSTH
T ss_pred Hhhhhheeeecccc
Confidence 99998877766544
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.57 E-value=2.6e-12 Score=133.85 Aligned_cols=345 Identities=12% Similarity=0.134 Sum_probs=229.5
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhh-chhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhch
Q 008754 160 ISRQSSYAQALLNGMNVLCGVGI-LSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (554)
Q Consensus 160 ~~~~~s~~~a~~~li~~iiG~Gi-LslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~ 237 (554)
.+|++...+..++.++..||+|+ ++.-.+++++|.. .++..++.|.+.+..+.-|+|.....|...+|...+.+..++
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdp 121 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDP 121 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCc
Confidence 37899999999999999999995 5566899999999 666678889999999999999887778666799999999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccc--cCCchhh-HhHHH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL--RDLTVLS-YISAG 314 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~--~~l~~l~-~~s~~ 314 (554)
..++.+.|.+++.....+..-++..+..++.+++.. .+ ...|..+..++++.+.++ |.....- ++|.+
T Consensus 122 a~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~-v~--------~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~i 192 (541)
T COG0833 122 AFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT-VP--------PWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSI 192 (541)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC-CC--------hHHHHHHHHHHHHHHHHhcccccceehHHHHHH
Confidence 999999999999999999999999999999888554 11 234444544444444433 3333222 23344
Q ss_pred HHHHHHHHH---HHHHhhhcccc--cc---cC-CCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHH
Q 008754 315 GVIASILVV---LCLFWVGLVDQ--VN---IH-SKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLI 384 (554)
Q Consensus 315 ~~~~~i~~~---~~~~~~~~~~~--~~---~~-~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~ 384 (554)
-+++++..+ +++.+-+..++ .+ ++ +.....++.++...+-+..|+|.|-+.+--...|-+||+| +||++.
T Consensus 193 KV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik 272 (541)
T COG0833 193 KVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIK 272 (541)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHH
Confidence 443333222 22222222211 11 22 3344556788888999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhcC----------CchhhhhcCCCc--hhHHHHHHHHHHHHhhhhhhcchhhhHHHHH
Q 008754 385 TCFLICTAMYAGVAYMGYT--MFGE----------STLSQFTLNMPQ--DLVATKIAVWTTVVNPFTKYALTISPVAMSL 450 (554)
Q Consensus 385 ~s~~~~~~lY~~vg~~gy~--~fG~----------~~~~~i~~n~p~--~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l 450 (554)
-.+.=+.++|++.-++--. .+.+ ...+++...+.+ ...+..+.+...++.++.+-.-.++...+.+
T Consensus 273 ~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L 352 (541)
T COG0833 273 QVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRML 352 (541)
T ss_pred HHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 9888888888765443221 1222 112233322211 1123345555556666655555566666666
Q ss_pred HhhcCCCC---------CCcc-hhhhHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhhHHHHhhhhHHHHHHhc
Q 008754 451 EELIPSNH---------LKSH-IYAICIRTALVISTLLVGLAIP--FFGLVMSLIGSLLTMLVTLILPCLCFLSILR 515 (554)
Q Consensus 451 ~~~l~~~~---------~~~~-~~~~~~~~~~~~~~~~vA~~vp--~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~ 515 (554)
..+-.+.. ++.. ...+.++.++.+++++.+..-. .|..++++.|.. .+++++--++.|+|.||
T Consensus 353 ~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~ 427 (541)
T COG0833 353 YSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 65443322 2222 3334555555555555555532 477777876643 46788888999999875
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.55 E-value=4.3e-11 Score=129.03 Aligned_cols=245 Identities=10% Similarity=0.027 Sum_probs=139.3
Q ss_pred CCCCCHHHHHHHHHHhh-hhhhhchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchh
Q 008754 161 SRQSSYAQALLNGMNVL-CGVGILSTP-YAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~i-iG~GiLslP-~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~ 238 (554)
+|+.+.++.+...++.+ +|+|+++++ .+...+|-..+...++.++.....+..+.|...+.|.........++++|+.
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~ 91 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEV 91 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCcc
Confidence 78999999999999985 899999999 5556777633333444444555555555555545544334444488999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhcccccc-C-CCccc-c-c--hhHHHHHHHHHHHhhhccccCCchhhHhH
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHL-S-FGGFY-L-N--SHHLFALMTTLAVLPTCWLRDLTVLSYIS 312 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~-~-~~~~~-~-~--~~~~~~iv~~li~~pl~~~~~l~~l~~~s 312 (554)
..++..+..++.....+.........++..+++.... . ...+. . . ....+.++..++...+. .+..+...+++
T Consensus 92 ~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in-~~g~k~~~~i~ 170 (475)
T TIGR03428 92 IGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVIN-CIGVEWMSRVN 170 (475)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHH-HhhhhHHHHHH
Confidence 9999999887765444444444444444433221100 0 00000 0 0 01122222222222222 33556666666
Q ss_pred HHHHHHHHHHHHHHHhhhc---ccccc--cCCC--CCccc-cCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHH
Q 008754 313 AGGVIASILVVLCLFWVGL---VDQVN--IHSK--GTPLN-LATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVL 383 (554)
Q Consensus 313 ~~~~~~~i~~~~~~~~~~~---~~~~~--~~~~--~~~~~-~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~ 383 (554)
.+..+..++.++.++..+. ..+.. +... +...+ ...+..++....|+|.|.+.+..+.+|+|||+| .||++
T Consensus 171 ~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai 250 (475)
T TIGR03428 171 TIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTI 250 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHH
Confidence 5544433322222221111 11111 1111 00111 112344556678999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 008754 384 ITCFLICTAMYAGVAYMGYTMFG 406 (554)
Q Consensus 384 ~~s~~~~~~lY~~vg~~gy~~fG 406 (554)
..++.+++++|.++.+......+
T Consensus 251 ~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 251 LTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999988877776665554444
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.52 E-value=2.6e-11 Score=130.43 Aligned_cols=241 Identities=19% Similarity=0.206 Sum_probs=152.8
Q ss_pred CCCCCHHH-HHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHH---HHHHHHHHhhhhCCCCCChHHHHHHHhc
Q 008754 161 SRQSSYAQ-ALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSF---YTGILLRRCLDSEPGLETYPDIGQAAFG 236 (554)
Q Consensus 161 ~~~~s~~~-a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~---~t~~~L~~~~~~~~~~~~y~~l~~~~~G 236 (554)
+|+.+.++ .....++.++|.|++.+|......+....+..++.+++.. ++...+....++.+|.+.| .++.+|
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~---~~~~~g 87 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAY---AKRALG 87 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeee---hhhhcC
Confidence 67788888 8999999999999999998776543111111333333333 4444444433344455555 999999
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHH
Q 008754 237 TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGV 316 (554)
Q Consensus 237 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~ 316 (554)
++..++..+..++..........+..+..+..+++......... .....+.++...+...+. .+..+...++..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ln-~~G~~~~~~~~~~~~ 164 (466)
T COG0531 88 PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGP--LLIILIALALIALLTLLN-LRGIKASAKINSIIT 164 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCc--hHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence 99889999999988888888888888888888876421000000 001122222222222232 346666666665555
Q ss_pred HHHHHHHHHHHhhhcc----cccccCCCC--CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHH
Q 008754 317 IASILVVLCLFWVGLV----DQVNIHSKG--TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLI 389 (554)
Q Consensus 317 ~~~i~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~ 389 (554)
+..++..+.+...+.. ...+..... ....+..+..++....|+|.|.+.+.++.+|+|||+| ++|++..++.+
T Consensus 165 ~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~ 244 (466)
T COG0531 165 ILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLI 244 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHH
Confidence 5444433333222211 111111100 1122335778888899999999999999999999976 89999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 008754 390 CTAMYAGVAYMGYTMFGE 407 (554)
Q Consensus 390 ~~~lY~~vg~~gy~~fG~ 407 (554)
++++|++.++......+.
T Consensus 245 ~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 245 VLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHhCccH
Confidence 999999999887776654
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.48 E-value=1e-10 Score=126.54 Aligned_cols=241 Identities=11% Similarity=0.011 Sum_probs=132.2
Q ss_pred CCCCCHHHHHHHHHHhhhh--hhhchhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhc
Q 008754 161 SRQSSYAQALLNGMNVLCG--VGILSTP-YAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFG 236 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG--~GiLslP-~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G 236 (554)
+|+.+.++.+...++. +| +|++... .++.++|.. -+...++.+++....+..+.|...+.|........+++++|
T Consensus 11 ~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g 89 (482)
T TIGR00907 11 KREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAP 89 (482)
T ss_pred ecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcc
Confidence 7889999999988884 44 6765544 566778876 45566677777777777777776666655555555778876
Q ss_pred h----hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHH--HHHHHHHHHhhhccccCCchhhH
Q 008754 237 T----AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHL--FALMTTLAVLPTCWLRDLTVLSY 310 (554)
Q Consensus 237 ~----~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~iv~~li~~pl~~~~~l~~l~~ 310 (554)
+ ...+++.+..++.....+.+.....+.++..++...... ..+....... ..++..+++..+. .+..+.+.+
T Consensus 90 ~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~in-~~g~k~~~~ 167 (482)
T TIGR00907 90 PRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYIPTRWHIFGIMIGIHLIHALIN-SLPTKWLPR 167 (482)
T ss_pred cccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccccCchhhhhHHHHHHHHHHHH-HhhHhHHHH
Confidence 4 556777777666655555555555555554433211100 0010111111 1111112222222 224455555
Q ss_pred hHHHHHHHHHHHHHHHH----hhhccc--ccc--c---CCCCCccccC--chhHHHHHHHHhhccccchhhHHhhccCCC
Q 008754 311 ISAGGVIASILVVLCLF----WVGLVD--QVN--I---HSKGTPLNLA--TLPVAIGLYGYCYSGHAVFPNIYTSMAQPN 377 (554)
Q Consensus 311 ~s~~~~~~~i~~~~~~~----~~~~~~--~~~--~---~~~~~~~~~~--~~~~a~~~~~faf~g~~~i~~i~~emk~p~ 377 (554)
+..+..+..++..+.++ ..+..+ ... + .+....+... .+..++....|+|.|.+....+.+|+|||+
T Consensus 168 ~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~ 247 (482)
T TIGR00907 168 ITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPE 247 (482)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChh
Confidence 55443333222222111 111100 000 0 0000000111 244555567799999999999999999999
Q ss_pred C-chhHHHHHHHHHHHHHHHHHHHHHHH
Q 008754 378 Q-FPKVLITCFLICTAMYAGVAYMGYTM 404 (554)
Q Consensus 378 ~-~~~~~~~s~~~~~~lY~~vg~~gy~~ 404 (554)
| +||++..++.++.++|++..+..+..
T Consensus 248 r~iP~Ai~~s~~i~~~~~~~~~l~~~~~ 275 (482)
T TIGR00907 248 VVGPRAIIGAVAIGIVTGFCFNIVLFFS 275 (482)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7 99999999988776655444443333
No 47
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.45 E-value=2.2e-10 Score=124.22 Aligned_cols=230 Identities=14% Similarity=0.128 Sum_probs=121.3
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhh----hCCCCCChHHHHHHHh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLS-FYTGILLRRCLD----SEPGLETYPDIGQAAF 235 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls-~~t~~~L~~~~~----~~~~~~~y~~l~~~~~ 235 (554)
+|++|.+..++..+..++ ++..+| .+.+.|+-.+..+++.+++- .-.+....|... ..+|.+.| +++++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~w---v~~a~ 76 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAW---VSNTL 76 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeee---hhhcc
Confidence 667999999988888776 446888 46677865444444434331 223444444432 34566677 99999
Q ss_pred chhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHH
Q 008754 236 GTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGG 315 (554)
Q Consensus 236 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~ 315 (554)
|++.+++..+..++................+..++.........+ ......+..+.++-+...+..+...+++.++
T Consensus 77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~----~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~ 152 (507)
T TIGR00910 77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPI----IKFIAALIIFWALAFSQFGGTKRTAKIAKAG 152 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccCcH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999887776665432222221111121222221100000010 1111111112222222344555555555443
Q ss_pred HHHHHHH-HHHH----Hhhhccccc-c--cCCCCCccccC--chhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHH
Q 008754 316 VIASILV-VLCL----FWVGLVDQV-N--IHSKGTPLNLA--TLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLI 384 (554)
Q Consensus 316 ~~~~i~~-~~~~----~~~~~~~~~-~--~~~~~~~~~~~--~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~ 384 (554)
.+..+++ ++++ +.....+++ . .+..+...++. +....+..++|+|.|.+......+|+|||+| +||++.
T Consensus 153 ~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~ 232 (507)
T TIGR00910 153 FFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMI 232 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHH
Confidence 3221111 1111 111111111 0 11111111121 2334455578999999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008754 385 TCFLICTAMYAGVAYM 400 (554)
Q Consensus 385 ~s~~~~~~lY~~vg~~ 400 (554)
.++.++.++|.+..+.
T Consensus 233 ~~~i~~~~l~~l~~~~ 248 (507)
T TIGR00910 233 LLMIAAICLDAIGGFS 248 (507)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999875543
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.45 E-value=5.1e-10 Score=121.36 Aligned_cols=240 Identities=11% Similarity=0.126 Sum_probs=129.6
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCC-CCChHHHHHHHhchh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSF-YTGILLRRCLDSEPG-LETYPDIGQAAFGTA 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~-~t~~~L~~~~~~~~~-~~~y~~l~~~~~G~~ 238 (554)
+|++|.++.++..++.++|.+ .+|.++.+.|..+++..++.+++.. .....+.|...+.|. ...-....++++|++
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~ 83 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPK 83 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCch
Confidence 678999999999999999986 5688888888776665555554432 233445555444442 223334489999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHH-Hhhhhhhcccccc-CCCccccchhHHHHHHHHHH--HhhhccccCCchhhHhHHH
Q 008754 239 GRIAVSVILYAELYACCIEYIILE-SDNLSSLFPNAHL-SFGGFYLNSHHLFALMTTLA--VLPTCWLRDLTVLSYISAG 314 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~-~~~l~~l~~~~~~-~~~~~~~~~~~~~~iv~~li--~~pl~~~~~l~~l~~~s~~ 314 (554)
.+++..+..+.............. ......++..... .......+......++..+. ++-..-.|.++..++++.+
T Consensus 84 ~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~ 163 (496)
T PRK15238 84 FAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTSI 163 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 988876654433222111110000 0000001111000 00000001111221222222 2222335577777777655
Q ss_pred HHHHHHH-----HHHH-HHhhhccccc--ccCC----CCCcccc---CchhHHHHHHHHhhccccchhhHHhhccCCCC-
Q 008754 315 GVIASIL-----VVLC-LFWVGLVDQV--NIHS----KGTPLNL---ATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ- 378 (554)
Q Consensus 315 ~~~~~i~-----~~~~-~~~~~~~~~~--~~~~----~~~~~~~---~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~- 378 (554)
+.++.++ +++. +++....... .... .....++ .++..++....|+|.|.+.+....+|+|||+|
T Consensus 164 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~ 243 (496)
T PRK15238 164 GGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKN 243 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCcc
Confidence 4333221 1111 1111111110 0000 0000111 23566777789999999999999999999997
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 008754 379 FPKVLITCFLICTAMYAGVAYMGY 402 (554)
Q Consensus 379 ~~~~~~~s~~~~~~lY~~vg~~gy 402 (554)
+||++..++..+.++|++..++..
T Consensus 244 ~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 244 FPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998755443
No 49
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.43 E-value=8e-11 Score=120.33 Aligned_cols=282 Identities=14% Similarity=0.213 Sum_probs=194.7
Q ss_pred CCCHHHHHHHHHHhhhhhhhchhHHHH-Hhh--cHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 163 QSSYAQALLNGMNVLCGVGILSTPYAA-KEG--GWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 163 ~~s~~~a~~~li~~iiG~GiLslP~a~-~~~--G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
|.|..|.+..++..++|+|++.+|... +++ ||++.++-.+.+.+. ..+..+...+.++ ++..|+.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~---~~l~~~l~~~~p~-~~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLL---ALLIYYLLKRFPG-KTLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH---HHHHHHHHHHCCC-CCHHHHHHHHhCcHH
Confidence 468899999999999999999999876 444 676444444444333 3344444435555 799999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhh-ccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSL-FPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
+.++.+.+.+.........+...++.+... +|..+ .+......+++.-....++++.+.+.+.+-...
T Consensus 77 g~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP-----------~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 77 GKIINLLYILYFLLISALVLREFSEFIKTYLLPETP-----------IWVIILLFLLVAAYAARKGIEVIARVAEILFPI 145 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999998888888888888888888765 44332 233333344444444466888888866544444
Q ss_pred HHHHHHHHHhhhcccccccC--CCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCCchhHHHHHHHHHHHHHHH
Q 008754 319 SILVVLCLFWVGLVDQVNIH--SKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAG 396 (554)
Q Consensus 319 ~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~~~~s~~~~~~lY~~ 396 (554)
.++..+.+.... .++.+++ .+-...++.++..+.....+.|.+...+..+...+|+|+|..|....+..+++++|..
T Consensus 146 ~~i~~~~i~~~~-~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~ 224 (320)
T PF03845_consen 146 FLILLLLILLLS-IPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLF 224 (320)
T ss_pred HHHHHHHHHHHh-cccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 433333332222 2222222 1222456677788888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhhh-------h--cCCC-chhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCC
Q 008754 397 VAYMGYTMFGESTLSQF-------T--LNMP-QDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLK 460 (554)
Q Consensus 397 vg~~gy~~fG~~~~~~i-------~--~n~p-~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~ 460 (554)
.-+.....||.+...+. . .+++ --.....+......+..+.+..+.++.....+.+.++.++.+
T Consensus 225 ~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 298 (320)
T PF03845_consen 225 IIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDYK 298 (320)
T ss_pred HHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999987533331 1 1112 001233344555566677788888999999999988875544
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.40 E-value=2.3e-11 Score=130.90 Aligned_cols=350 Identities=12% Similarity=0.096 Sum_probs=211.2
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CChHHHHHHHhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTP-YAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGL-ETYPDIGQAAFGT 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP-~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~-~~y~~l~~~~~G~ 237 (554)
+|.++.++-.+..++.+||+|++..- .+.++.|-. -++..++.|..++.++.-+.|...+.|.. .++....++.+|+
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e 108 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGE 108 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCc
Confidence 88999999999999999999977666 677888877 55556677777788888888887777763 4455559999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhc-------cccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLF-------PNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSY 310 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~-------~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~ 310 (554)
...+++.|.+++.....+..-....+.++..+. .....+...|. ..+++++..+.++..-..-..+....
T Consensus 109 ~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~---~~fla~~v~in~~gv~~~ge~ef~~~ 185 (554)
T KOG1286|consen 109 SLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWI---PDFLAFILIINLFGVLAYGEVEFSLA 185 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccH---HHHHHHHHHHHHHHHhhccceeehHH
Confidence 999999999999988888889999999998876 10011112221 12222222222222222113333332
Q ss_pred hHHHHHHHHHHHHHHHHhhhccc-cc-c------cCC-CCC-ccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-c
Q 008754 311 ISAGGVIASILVVLCLFWVGLVD-QV-N------IHS-KGT-PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-F 379 (554)
Q Consensus 311 ~s~~~~~~~i~~~~~~~~~~~~~-~~-~------~~~-~~~-~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~ 379 (554)
+..+-.+..++++.+++..|... +. + ++. ... +..+.++..++-++.|+|.|-+.+-...+|-|||+| .
T Consensus 186 ~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~I 265 (554)
T KOG1286|consen 186 FNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAI 265 (554)
T ss_pred HHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccc
Confidence 22222222222222233333322 11 2 221 112 334788999999999999999999999999999998 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhh------h--hcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHH
Q 008754 380 PKVLITCFLICTAMYAGVAYMGYTMFGEST---LSQ------F--TLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAM 448 (554)
Q Consensus 380 ~~~~~~s~~~~~~lY~~vg~~gy~~fG~~~---~~~------i--~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~ 448 (554)
|+++..++..++++|+++.+.--++-.-+. .++ + ..+........-+.+...++.+.++--..+++..+
T Consensus 266 P~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR 345 (554)
T KOG1286|consen 266 PKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSR 345 (554)
T ss_pred cHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHH
Confidence 999999999999999998876544322111 111 1 11111111111133444444444444445555555
Q ss_pred HHHhh-----cCCCCCCc--chhhhHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHhhHHHHhhhhHHHHHHhc
Q 008754 449 SLEEL-----IPSNHLKS--HIYAICIRTALVISTLLVGLAIP-----FFGLVMSLIGSLLTMLVTLILPCLCFLSILR 515 (554)
Q Consensus 449 ~l~~~-----l~~~~~~~--~~~~~~~~~~~~~~~~~vA~~vp-----~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~ 515 (554)
.+..+ +|+-..+- +.+-+....+..+...+.++... .|+.++++.|. +.+++|.+-+++|++.|+
T Consensus 346 ~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 346 VLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence 55443 33211110 01112222333333333333332 36788888553 457888888888888775
No 51
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.37 E-value=2.5e-09 Score=115.34 Aligned_cols=235 Identities=11% Similarity=0.141 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHH----HHHHHHHHhhhhCCCCCChHHHHHHHhchh
Q 008754 163 QSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSF----YTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (554)
Q Consensus 163 ~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~----~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~ 238 (554)
|++...-++..+..+++. ..+|.+ .+.|+..++..++.+++.. ++.-.|....++.+|.+.| .++++|++
T Consensus 2 ~~~~~~l~~~~~~~v~~~--~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~---~~~a~G~~ 75 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVSL--RGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRW---VGEAFGAR 75 (474)
T ss_pred cccHHHHHHHHHHHHHHh--hcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceee---HhhhcChh
Confidence 456666666665555554 455744 5678765555555554333 3334444444444555566 99999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHH--HhhhccccCCchhhHhHHHH-
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLA--VLPTCWLRDLTVLSYISAGG- 315 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li--~~pl~~~~~l~~l~~~s~~~- 315 (554)
.+++..+.+++........-+...+..+..+.+..... .... ........+..++ .+-..-.+.++..+.++.++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~ 153 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-ESLA-GNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGG 153 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-cccc-cccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999887776543221111111122121111110000 0000 0111111111111 11222344666665555432
Q ss_pred HHHHHHH----HH-HHHhhhcccccccCC--C---CCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHH
Q 008754 316 VIASILV----VL-CLFWVGLVDQVNIHS--K---GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLI 384 (554)
Q Consensus 316 ~~~~i~~----~~-~~~~~~~~~~~~~~~--~---~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~ 384 (554)
.+..++. ++ .+++.........+. . +...++..+..+. .+.|+|.|.+.+....+|+|||+| +||++.
T Consensus 154 ~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPrAi~ 232 (474)
T TIGR03813 154 IVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPIAIL 232 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhHHHH
Confidence 1111111 11 111111101111110 0 1111233433333 457899999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 008754 385 TCFLICTAMYAGVAYMGYTMFG 406 (554)
Q Consensus 385 ~s~~~~~~lY~~vg~~gy~~fG 406 (554)
.+..++.++|++..+......+
T Consensus 233 ~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 233 IAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999987766554444
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.19 E-value=1.8e-10 Score=124.51 Aligned_cols=232 Identities=13% Similarity=0.118 Sum_probs=146.9
Q ss_pred HHHHhhhhhhhchh-HHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHHHHHHHHH
Q 008754 172 NGMNVLCGVGILST-PYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYA 249 (554)
Q Consensus 172 ~li~~iiG~GiLsl-P~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~~~~ 249 (554)
..++.++|+|++.. +.+..++|.. .++..++.+++...+..-+.+...+.+....+....++.+|+..++.+.+.+++
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 45778899995554 4778899986 666677777777777777777776666555666779999999999999998777
Q ss_pred HHhHHHHHHHHHHHhhhhhh--ccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHH----HHHHHHHHH
Q 008754 250 ELYACCIEYIILESDNLSSL--FPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG----GVIASILVV 323 (554)
Q Consensus 250 ~~~g~~~~y~i~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~----~~~~~i~~~ 323 (554)
.............+..+..+ ++.... .+... . .+.++..+++..+.+. ..+....+... .+++.+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLPS---TWVWG-I-LIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccccccccc---ccccc-c-hhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhhHhhhhh
Confidence 76666666666666666555 332220 11100 0 2233333333333332 44433332222 221221111
Q ss_pred HHH-HhhhcccccccC--------------C---CCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHH
Q 008754 324 LCL-FWVGLVDQVNIH--------------S---KGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLI 384 (554)
Q Consensus 324 ~~~-~~~~~~~~~~~~--------------~---~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~ 384 (554)
+.. +......++... + ++...++.++..++....++|.|.+.+....+|.|||+| +||++.
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 111 111111111000 0 011234778999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc
Q 008754 385 TCFLICTAMYAGVAYMGYTMFGEST 409 (554)
Q Consensus 385 ~s~~~~~~lY~~vg~~gy~~fG~~~ 409 (554)
.++..+.++|++.....-...+.+.
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCccc
Confidence 9999999999998877666655443
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.07 E-value=1.8e-09 Score=97.97 Aligned_cols=214 Identities=15% Similarity=0.215 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh------------CC--C----
Q 008754 163 QSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS------------EP--G---- 223 (554)
Q Consensus 163 ~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~------------~~--~---- 223 (554)
..|..-......|-++|+|.|++|.||+.+||+ ++.++.+.+++++.+...+.+.+.. +. +
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 456677788899999999999999999999999 9999999999999988777665320 00 0
Q ss_pred --------------------------------------CCChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 008754 224 --------------------------------------LETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDN 265 (554)
Q Consensus 224 --------------------------------------~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~ 265 (554)
.....+++...|.|.+-.+.-++++++++|-...|....-..
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs 170 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFS 170 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchH
Confidence 013356777888888888888999999999999987766555
Q ss_pred hhhhcccc-------------ccC----CCcc--ccc-hhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHHHHHH
Q 008754 266 LSSLFPNA-------------HLS----FGGF--YLN-SHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLC 325 (554)
Q Consensus 266 l~~l~~~~-------------~~~----~~~~--~~~-~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~~~~~ 325 (554)
+-++.... +.+ ++.. ..+ .+.+.++.+.++++|+.+. ++.+.++++++..+.-+.-.+.
T Consensus 171 ~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~ 249 (319)
T KOG3832|consen 171 AMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFIL 249 (319)
T ss_pred hhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccc
Confidence 44443211 001 1110 011 1344555666777898877 8888888887665554443322
Q ss_pred HHhhhc--ccccccCCCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCC
Q 008754 326 LFWVGL--VDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPN 377 (554)
Q Consensus 326 ~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~ 377 (554)
.+..+. .....-...+.....-++...++...|+|.+|...|.....++.+.
T Consensus 250 g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 250 GISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 222211 1111111223344566777888999999999999999988887655
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.89 E-value=1.9e-06 Score=90.36 Aligned_cols=244 Identities=13% Similarity=0.048 Sum_probs=119.6
Q ss_pred CCCCCHHHHHHHHH---HhhhhhhhchhHHHHHhhcHHHHHH-HHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhc
Q 008754 161 SRQSSYAQALLNGM---NVLCGVGILSTPYAAKEGGWFGLLI-LVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFG 236 (554)
Q Consensus 161 ~~~~s~~~a~~~li---~~iiG~GiLslP~a~~~~G~~g~il-l~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G 236 (554)
+|+.+.++.+..-. +..-|.- -++.+.+..+|..+++. .++.+++.+.++.-|+|.+...|......--+...-+
T Consensus 47 ~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~lap 125 (550)
T KOG1289|consen 47 KREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAVLAP 125 (550)
T ss_pred hhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHhcC
Confidence 67777766554433 3333321 24445555555442222 3455555566666666665455532222111222223
Q ss_pred hh----hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHH-HHHHHhhhccccCCchhhHh
Q 008754 237 TA----GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALM-TTLAVLPTCWLRDLTVLSYI 311 (554)
Q Consensus 237 ~~----g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv-~~li~~pl~~~~~l~~l~~~ 311 (554)
++ ..|++.+..++.......+-.-..++.+.....- ..+++..++.+.+.+. +.+++.-+.-...-+.+.++
T Consensus 126 ~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l---~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I 202 (550)
T KOG1289|consen 126 PKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSL---TNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARI 202 (550)
T ss_pred cchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhh---cCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33 3344444433322222221111222222222211 1122222222222222 22222222212245677777
Q ss_pred HHHHHHHHHHHHHHHHhhhc---ccccccCC-------CCCccccC----chhHHHHHHHHhhccccchhhHHhhccCCC
Q 008754 312 SAGGVIASILVVLCLFWVGL---VDQVNIHS-------KGTPLNLA----TLPVAIGLYGYCYSGHAVFPNIYTSMAQPN 377 (554)
Q Consensus 312 s~~~~~~~i~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~----~~~~a~~~~~faf~g~~~i~~i~~emk~p~ 377 (554)
+.+++...++.++..++... .+..++.. .....+|. .+..++-...+++.|.....++.+|.||++
T Consensus 203 ~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs 282 (550)
T KOG1289|consen 203 NSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS 282 (550)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchh
Confidence 77777666655444333221 11111211 11123343 244556667788999999999999999999
Q ss_pred C-chhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008754 378 Q-FPKVLITCFLICTAMYAGVAYMGYTMFGES 408 (554)
Q Consensus 378 ~-~~~~~~~s~~~~~~lY~~vg~~gy~~fG~~ 408 (554)
| .||++..+..+++++=.++.+.-..+-+++
T Consensus 283 k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 283 KAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 7 899999888888877777776666666643
No 55
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.75 E-value=2e-05 Score=82.26 Aligned_cols=253 Identities=15% Similarity=0.110 Sum_probs=159.5
Q ss_pred HHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhh
Q 008754 230 IGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLS 309 (554)
Q Consensus 230 l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~ 309 (554)
+.+..||.+|.++.++++.+.+.|-.....+..++..... +..+ ..++.++..+++..++.. ..+.+.
T Consensus 86 ~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~~----------~~~~ili~g~l~~l~~if-G~r~l~ 153 (442)
T COG1457 86 LSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGLP----------VWAGILIIGVLMTLVTIF-GYRALH 153 (442)
T ss_pred eecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCCc----------HHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 4688999999999999999999999999999988862222 2211 234444444444444444 666666
Q ss_pred HhHHHHHHHHHHHHHHHHhhhcccccc--cCCCCCccccCchhHHHHHHHHhhccc-cchhhHHhhccCCC--CchhHHH
Q 008754 310 YISAGGVIASILVVLCLFWVGLVDQVN--IHSKGTPLNLATLPVAIGLYGYCYSGH-AVFPNIYTSMAQPN--QFPKVLI 384 (554)
Q Consensus 310 ~~s~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~faf~g~-~~i~~i~~emk~p~--~~~~~~~ 384 (554)
.++.......+++.+..++........ ......+.++.++..++..++-.+..+ .....+.+-+|+|+ |.-....
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~ 233 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAV 233 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHH
Confidence 666666666555555555443332211 111222556777778887766666666 46677888888888 6667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCCcch
Q 008754 385 TCFLICTAMYAGVAYMGYTMFGEST-LSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHI 463 (554)
Q Consensus 385 ~s~~~~~~lY~~vg~~gy~~fG~~~-~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~ 463 (554)
.+..+...+-.++|.+.-.+-|+.. ..+....+.. +...+.+..+++.+++-...+|+...++....++-.+ .
T Consensus 234 ~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l~k---~ 307 (442)
T COG1457 234 LGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKLSK---V 307 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhhhh---H
Confidence 7888888888888888888888876 4444444432 3455666667777777778888888887777776222 2
Q ss_pred hhhHHHHHHHHHHHHHHh----hcchhHHHHHHHHHHHhhHHH
Q 008754 464 YAICIRTALVISTLLVGL----AIPFFGLVMSLIGSLLTMLVT 502 (554)
Q Consensus 464 ~~~~~~~~~~~~~~~vA~----~vp~~~~vi~l~Gs~~~~~~~ 502 (554)
.+.....+. ...++|+ +..+++..+.++|........
T Consensus 308 ~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~ 348 (442)
T COG1457 308 TRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGG 348 (442)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 2233333 345677777777766544333
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.75 E-value=1.4e-05 Score=78.84 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhhhhhhchhHH-HH---HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHH
Q 008754 167 AQALLNGMNVLCGVGILSTPY-AA---KEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIA 242 (554)
Q Consensus 167 ~~a~~~li~~iiG~GiLslP~-a~---~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~ 242 (554)
.+-.+..+++++|+|. +.-. .+ ..-|+-|....++++++-..++..+.+.. ++-+..+|.|..++.+||+...+
T Consensus 6 ~~~~f~~ig~~vGAGf-AsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig-~~f~a~~y~~~~~~v~~~~~~ki 83 (349)
T COG3949 6 MRWAFAFIGTVVGAGF-ASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIG-KKFNATSYREILKYVSGPKFAKI 83 (349)
T ss_pred HHHHHHHHHHhhcccc-cchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHhhHHHHHH
Confidence 4556777889999995 4443 22 34566677777778888888888887776 55556799999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHH-HHHHHHHhhhccccCCchhhHhH
Q 008754 243 VSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFA-LMTTLAVLPTCWLRDLTVLSYIS 312 (554)
Q Consensus 243 ~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-iv~~li~~pl~~~~~l~~l~~~s 312 (554)
.++...+.+++.+++-+...+..+.+.+.- +.++. ++..+++..+-++++.+.+..+.
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~~e~~~l------------P~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLLEEMFGL------------PYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhCc------------cHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 999999999999999998888888877632 22333 45555555555566666655554
No 57
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.72 E-value=5.1e-05 Score=79.51 Aligned_cols=257 Identities=15% Similarity=0.102 Sum_probs=146.7
Q ss_pred CChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccC
Q 008754 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRD 304 (554)
Q Consensus 225 ~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~ 304 (554)
.++.-+.+..||++|..+..++..+...|--.......++.+..+.+..... .......++..++.++.... .
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~~~-G 130 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWLLS-G 130 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHHH-H
Confidence 4788899999999999999998888888888888888888888887532111 01122333334444444433 5
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHhhhcc-cccc--cCCCCCccccCchhHHHHHHHHhh-ccccchhhHHhhccCCCCch
Q 008754 305 LTVLSYISAGGVIASILVVLCLFWVGLV-DQVN--IHSKGTPLNLATLPVAIGLYGYCY-SGHAVFPNIYTSMAQPNQFP 380 (554)
Q Consensus 305 l~~l~~~s~~~~~~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~a~~~~~faf-~g~~~i~~i~~emk~p~~~~ 380 (554)
.+.++++..++..+..+..+...+.... .+.+ ..+. .+ ..+..++....-.+ ..-...+.+.+..|+|++.-
T Consensus 131 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~ 206 (386)
T TIGR02358 131 PLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNRA---GD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVF 206 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCCC---CC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCccee
Confidence 6666666666655555444433322111 1111 1111 11 22333333322111 22235788999999988888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCC
Q 008754 381 KVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLK 460 (554)
Q Consensus 381 ~~~~~s~~~~~~lY~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~ 460 (554)
+...+++.+...+..++|.....+.++....++...+. ....+.+..++..+++-....++....+..++++-.++
T Consensus 207 ~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~~~ 282 (386)
T TIGR02358 207 LGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG----LGIPALLIILLSTVTTTFMDIYSAAISTGNLLPRLKVK 282 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 88888888888888999988877776643333332221 11233344445555556677888888888888653221
Q ss_pred cchhhhHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHhhHHH
Q 008754 461 SHIYAICIRTALVISTLLVGLA--IPFFGLVMSLIGSLLTMLVT 502 (554)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~vA~~--vp~~~~vi~l~Gs~~~~~~~ 502 (554)
++..+ ..+...+++.. ...|..++++.|.+......
T Consensus 283 ---~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~g 320 (386)
T TIGR02358 283 ---HLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYA 320 (386)
T ss_pred ---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12111 11222222222 23566777776666555443
No 58
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=98.71 E-value=7.2e-06 Score=87.73 Aligned_cols=161 Identities=15% Similarity=0.202 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCChHHHHHHHhchhh
Q 008754 164 SSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS--EPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 164 ~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~--~~~~~~y~~l~~~~~G~~g 239 (554)
.+......-.+-.+.|+= .+-+-|.+..+|.. +.++++++++++..|..-+...+.. .+.-.+|.- ..+.+|+-.
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfm-ISRsLGPEF 193 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFM-ISRSLGPEF 193 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEE-EecccCccc
Confidence 344555555666777775 44566888889999 9999999999888888777655422 122345643 345677777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhh-hccccccC-------CCccccchhHHHHHHHHHHHhhhccccCCchhhHh
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSS-LFPNAHLS-------FGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYI 311 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~-l~~~~~~~-------~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~ 311 (554)
+-.+.+++++........|++..-+.+-. ++|....- ..+..++.-++...+..++....+++ ..+....+
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~-GVK~Vnk~ 272 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFV-GVKFVNKF 272 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 77777888777666777788877776643 55543211 11112222233333333333333333 45555555
Q ss_pred HHHHHHHHHHHHHHH
Q 008754 312 SAGGVIASILVVLCL 326 (554)
Q Consensus 312 s~~~~~~~i~~~~~~ 326 (554)
+.+.+.++++.++++
T Consensus 273 A~vfL~CVILSIlai 287 (1075)
T KOG2082|consen 273 APVFLACVILSILAI 287 (1075)
T ss_pred hHHHHHHHHHHHHHH
Confidence 555555555444443
No 59
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.71 E-value=3.3e-05 Score=80.03 Aligned_cols=216 Identities=16% Similarity=0.200 Sum_probs=114.7
Q ss_pred HHHHHhhhhhhhchhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHHHHHH
Q 008754 171 LNGMNVLCGVGILSTPYAA-KEGG--WF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVI 246 (554)
Q Consensus 171 ~~li~~iiG~GiLslP~a~-~~~G--~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~ 246 (554)
+.+..-.+|+|.|-.|-.+ +++| |. +.+.+++.|+..-..+.. ...+.+ .+|.++.++ +||+..++..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~g--G~~~~l~~~-~g~~f~~lf~~~ 75 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVG--GGYDSLSAR-IGKVFGILFTVI 75 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecC--CCHHHHHHH-hChHHHHHHHHH
Confidence 3566778999999999666 5666 44 666666666555444333 222333 377776665 667777776665
Q ss_pred HHHHH---h----HHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 247 LYAEL---Y----ACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 247 ~~~~~---~----g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
.++.. + ...++|-+. +.++++... ... ....+.++...+++.++ +|.-|...++..+-.-+.
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~---~~~---~l~i~siiff~i~~~l~-~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG----IAPLLHSPT---SLL---ALFIFSLIFFAVVLLLS-LNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH----HHhccCccc---chH---HHHHHHHHHHHHHHHHH-cCcccHHHHhHHHHHHHH
Confidence 54332 1 122333322 444443211 000 01223333333333344 334455555554444444
Q ss_pred HHHHHHHHhhhcccccccCCCC-Ccccc-CchhHHHHHHHHhhc-------cccchhhHHh-hccCCCC-chhHHHHHH-
Q 008754 320 ILVVLCLFWVGLVDQVNIHSKG-TPLNL-ATLPVAIGLYGYCYS-------GHAVFPNIYT-SMAQPNQ-FPKVLITCF- 387 (554)
Q Consensus 320 i~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~a~~~~~faf~-------g~~~i~~i~~-emk~p~~-~~~~~~~s~- 387 (554)
++.++.++..++..+.+....+ ....- ..+..++--..++|. |+..+..+.+ ++|||+| .++++..+.
T Consensus 145 Li~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~i 224 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLI 224 (378)
T ss_pred HHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5445555555554432211111 11111 346666666777777 8888888888 9999987 555555555
Q ss_pred --HHHHHHHHHHHHHHHH
Q 008754 388 --LICTAMYAGVAYMGYT 403 (554)
Q Consensus 388 --~~~~~lY~~vg~~gy~ 403 (554)
.....+|...+..|..
T Consensus 225 a~i~l~~vY~~L~~lGa~ 242 (378)
T TIGR00796 225 AAVLLAFIYLSLFYLGAT 242 (378)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 4445556555555544
No 60
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.69 E-value=3.5e-05 Score=82.44 Aligned_cols=296 Identities=10% Similarity=0.038 Sum_probs=156.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhh--cHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEG--GWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~--G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~ 237 (554)
+|+-++++-...-++..+...-+.+....-.. ++- .++..++..++...-..+..... .+.| .++.-+.+..||.
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G-~r~G-l~~~v~sR~~FG~ 88 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAG-AKYG-LPFPVLSRASFGI 88 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhH-HHhC-CCcchhhhhhhhh
Confidence 45556666666655555555444444333222 333 44444444444443344444433 2333 3677889999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccc--cch-hHHHHHHHHHHHhhhccccCCchhhHhHHH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFY--LNS-HHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~--~~~-~~~~~iv~~li~~pl~~~~~l~~l~~~s~~ 314 (554)
+|..+..++..+...+-........++.+..++........... .+. .....++..++.+++......+...+....
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~ 168 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWL 168 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999998888888888888888887776654321100000 011 122233444455554444455555555555
Q ss_pred HHHHHHHHHHHHHhhhcccc-c-c-cCCC---CCccccCchhHHHHHHHHhh-ccccchhhHHhhccCCCCchhHHHHHH
Q 008754 315 GVIASILVVLCLFWVGLVDQ-V-N-IHSK---GTPLNLATLPVAIGLYGYCY-SGHAVFPNIYTSMAQPNQFPKVLITCF 387 (554)
Q Consensus 315 ~~~~~i~~~~~~~~~~~~~~-~-~-~~~~---~~~~~~~~~~~a~~~~~faf-~g~~~i~~i~~emk~p~~~~~~~~~s~ 387 (554)
+....+++++..++.....+ . . .+.. ........+..++...+-.+ ..-.+.+.+.+.+|++++-.+...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~~~ 248 (442)
T TIGR00800 169 AVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFLAL 248 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHHHH
Confidence 54444433333333211111 0 0 1111 11122334445555433333 334688999999999887666677788
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCchhh--hhcCCCchhH--HHH---HHHHHHHHhh-hhhhcchhhhHHHHHHhhcC
Q 008754 388 LICTAMYAGVAYMGYTM----FGESTLSQ--FTLNMPQDLV--ATK---IAVWTTVVNP-FTKYALTISPVAMSLEELIP 455 (554)
Q Consensus 388 ~~~~~lY~~vg~~gy~~----fG~~~~~~--i~~n~p~~~~--~~~---i~~~~~~i~~-~~s~pl~~~p~~~~l~~~l~ 455 (554)
....+....+|+++-.. +|+...++ ....+..... ... ......++.. .+.-...+++....+..+++
T Consensus 249 ~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~ 328 (442)
T TIGR00800 249 PGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLP 328 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCc
Confidence 87787777777777665 77653332 2222221111 000 1111111222 23455667888888888887
Q ss_pred CCC
Q 008754 456 SNH 458 (554)
Q Consensus 456 ~~~ 458 (554)
+..
T Consensus 329 ~~~ 331 (442)
T TIGR00800 329 KYI 331 (442)
T ss_pred Ccc
Confidence 643
No 61
>PRK11375 allantoin permease; Provisional
Probab=98.57 E-value=0.00035 Score=75.37 Aligned_cols=299 Identities=14% Similarity=0.066 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHHHHHHHH-HHHhHHHHHHHHHHHhhhhhhc----
Q 008754 196 GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILY-AELYACCIEYIILESDNLSSLF---- 270 (554)
Q Consensus 196 g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~~~-~~~~g~~~~y~i~~~~~l~~l~---- 270 (554)
+++..++..++...-+.+..... .+.| ..+.-+.+..||.+|..+..++.. +...+-...-..+.++.+..++
T Consensus 62 ai~ai~lG~~i~~~~~~l~g~~G-~~~G-l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~ 139 (484)
T PRK11375 62 IMLAIILSAFFIAAVMVLNGAAG-SKYG-VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIW 139 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-cccC-CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444443333333333333333 2233 478889999999999888777763 3444444444555555555333
Q ss_pred cccc---cCCCccccchh-HHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHHHHHHHH-hhhcccccc----cCCCC
Q 008754 271 PNAH---LSFGGFYLNSH-HLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLF-WVGLVDQVN----IHSKG 341 (554)
Q Consensus 271 ~~~~---~~~~~~~~~~~-~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~~~~~~~-~~~~~~~~~----~~~~~ 341 (554)
+... .+.+....... ....++..++.+++.+ ...+.++++..++....+...+.++ +.....+.+ ..+..
T Consensus 140 ~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (484)
T PRK11375 140 PGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSG 218 (484)
T ss_pred ccccccccccccCCCcHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCccc
Confidence 2211 00000111111 2222334455555554 3666666666555544433322222 211111111 11111
Q ss_pred Cc---cccCchhHHHHHHHHhhc-cccchhhHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHH----HHHhcCCchhh-
Q 008754 342 TP---LNLATLPVAIGLYGYCYS-GHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMG----YTMFGESTLSQ- 412 (554)
Q Consensus 342 ~~---~~~~~~~~a~~~~~faf~-g~~~i~~i~~emk~p~~~~~~~~~s~~~~~~lY~~vg~~g----y~~fG~~~~~~- 412 (554)
.. .....+..++...+=++. +-.+.|.+.+..|++++-.+...+++.+...+...+|++. ...+|+...+.
T Consensus 219 ~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~ 298 (484)
T PRK11375 219 IQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVL 298 (484)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH
Confidence 10 011223333333333344 3458889999999988766666667776666665555443 34566543322
Q ss_pred -hhcCCCchhHHHHHHHHHHHHhhhhh-hcchhhhHHHHHHhhcCCCCCCcchhhhHHHHHHHHHHHHHHhh--c---ch
Q 008754 413 -FTLNMPQDLVATKIAVWTTVVNPFTK-YALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLA--I---PF 485 (554)
Q Consensus 413 -i~~n~p~~~~~~~i~~~~~~i~~~~s-~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vA~~--v---p~ 485 (554)
+..++.. .....++.+..++..++. ....+++....+..++|+..++ +|..+ +..++..+++.. + ..
T Consensus 299 ~i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~~---~~~~~--i~~iig~~~~pw~~~~~~~~ 372 (484)
T PRK11375 299 DIVQRWDS-LFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKLTY---KNGVL--IASIISLLICPWKLMENQDS 372 (484)
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCccch---hhHHH--HHHHHHHHhccHHHhccHHH
Confidence 3333321 122233444445555544 3457788888888888864322 11111 111111222211 1 22
Q ss_pred hHHHHHHHHHHHhhHHHH
Q 008754 486 FGLVMSLIGSLLTMLVTL 503 (554)
Q Consensus 486 ~~~vi~l~Gs~~~~~~~~ 503 (554)
|..++++.|++.+.+...
T Consensus 373 f~~FL~~lg~~l~Pi~gI 390 (484)
T PRK11375 373 IYLFLDIIGGMLGPVIGV 390 (484)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777776665443
No 62
>PRK12488 acetate permease; Provisional
Probab=98.54 E-value=0.00084 Score=73.75 Aligned_cols=147 Identities=10% Similarity=0.050 Sum_probs=98.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHH-HHHHHHHhhhhCCCCCChHHHHHHHhc-h
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFY-TGILLRRCLDSEPGLETYPDIGQAAFG-T 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls~~-t~~~L~~~~~~~~~~~~y~~l~~~~~G-~ 237 (554)
.|+.+++...+.+..+.++++ +++.|......|+.+....+ ...+.+. ...++.+-. |+.+..|.+|..++-|| +
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~l-r~~g~~T~~d~l~~Rf~s~ 143 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERL-RNLGKYTFADVVSYRLAQG 143 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHH-HHCCCcchHHHHHHHcCCC
Confidence 789999999999999999887 78899777777875432221 1111211 123344444 45567899999988887 6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
+.|.+..++..+........-+...+..++.+++ .+ .....++..++++..+..-.++...++..+-.+
T Consensus 144 ~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 144 PVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-IS----------YLYAVVIVGALMVLYVTFGGMLATTWVQIIKAV 212 (549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 6888888877777777777777777887777763 11 223344455555556667788888888776554
Q ss_pred HHH
Q 008754 318 ASI 320 (554)
Q Consensus 318 ~~i 320 (554)
..+
T Consensus 213 im~ 215 (549)
T PRK12488 213 LLL 215 (549)
T ss_pred HHH
Confidence 443
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.47 E-value=0.0018 Score=69.94 Aligned_cols=232 Identities=13% Similarity=0.031 Sum_probs=127.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHH-HHHHH--HHHHHHH-HHHHHHHHHhhhhCCCCCChHHHHHHHh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWF-GLLIL--VAFGVLS-FYTGILLRRCLDSEPGLETYPDIGQAAF 235 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~-g~ill--~~~~~ls-~~t~~~L~~~~~~~~~~~~y~~l~~~~~ 235 (554)
.|+.+++...+.+..+.+|++ +++.|-...+.|+. ..... ...+.+. .+-+..+.+.. ++.+..|.+|+.++-|
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~T~~e~l~~Ry 117 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIIS-RKYNAITINDVLKARY 117 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHHHHc
Confidence 789999999999999999997 77788666566653 11111 1111111 11122233333 5667789999999999
Q ss_pred chh-hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHH
Q 008754 236 GTA-GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (554)
Q Consensus 236 G~~-g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~ 314 (554)
|++ .+.+..+...+.+++..++-+...+..++.+++ .+ .....++.+++++-.+..-.++...++..+
T Consensus 118 g~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GG~~av~~td~i 186 (471)
T TIGR02119 118 NNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-LS----------YLTALFIFSSSVLIYTTFGGFRAVALTDAI 186 (471)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 965 467777777777777777777777877777763 11 223334444555556666688888887776
Q ss_pred HHHHHHHHHHHHHhhhccc--cc--------ccCCC---CC-ccccC--chhHHHH-HHHHhhccccchhhHHhhccCCC
Q 008754 315 GVIASILVVLCLFWVGLVD--QV--------NIHSK---GT-PLNLA--TLPVAIG-LYGYCYSGHAVFPNIYTSMAQPN 377 (554)
Q Consensus 315 ~~~~~i~~~~~~~~~~~~~--~~--------~~~~~---~~-~~~~~--~~~~a~~-~~~faf~g~~~i~~i~~emk~p~ 377 (554)
-.+..+...+.+......+ +. +.+++ +. ..++. .+...+. ...++..+.+....-.-..|+++
T Consensus 187 Q~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~~ 266 (471)
T TIGR02119 187 QGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDSK 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCHH
Confidence 5544433222222111111 00 00000 00 00111 1111221 12233334443333344556666
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008754 378 QFPKVLITCFLICTAMYAGVAYMGYTM 404 (554)
Q Consensus 378 ~~~~~~~~s~~~~~~lY~~vg~~gy~~ 404 (554)
..+|....+..+...++....+.|..+
T Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 267 AMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 677877777766666666665555443
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.45 E-value=0.00069 Score=71.71 Aligned_cols=148 Identities=14% Similarity=0.023 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhch-h
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT-A 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~-~ 238 (554)
+|+.+++...+.+..+.+|++ +++.|....+.|+.+....+...+.......+..+.. ++.+..|.+|..++-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIF-INNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCchhHHHHHHhCchH
Confidence 678899999999999988886 8888876666776533222222222233444444444 456678999999999998 5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
.+.+..+...+..+......+...+..++.+++ .+ .....++.+++++..+..-.++...+...+-.+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i~----------~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITG-LD----------LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ch----------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 777777777777778888888888888887763 11 2233444455555556667888888877766544
Q ss_pred HH
Q 008754 319 SI 320 (554)
Q Consensus 319 ~i 320 (554)
++
T Consensus 150 ~~ 151 (407)
T TIGR00813 150 MI 151 (407)
T ss_pred HH
Confidence 33
No 65
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.41 E-value=0.0044 Score=67.11 Aligned_cols=231 Identities=13% Similarity=0.023 Sum_probs=123.6
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHH---HHHHHHHHH-HHHHHHHHHhhhhCCCCCChHHHHHHHh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLL---ILVAFGVLS-FYTGILLRRCLDSEPGLETYPDIGQAAF 235 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~i---ll~~~~~ls-~~t~~~L~~~~~~~~~~~~y~~l~~~~~ 235 (554)
+|+.+++...+.+..+.+|++ .++.|....+.|+.... .....+.+. .+.+..+.+.. |+.+..|++|+.++-|
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~T~~e~l~~Ry 118 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILA-RKYNAVTLNDMLRARY 118 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHHHHh
Confidence 788999999999999888885 77888555555653111 111111111 12222333333 5567789999999999
Q ss_pred chh-hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHH
Q 008754 236 GTA-GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (554)
Q Consensus 236 G~~-g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~ 314 (554)
|++ .+.+..+...+..+......+...+..++.+++ .+ .....++..++++..+.+-.++...+...+
T Consensus 119 g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 119 QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-IS----------YETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 865 455666655556666666667777777777763 11 223334445555566667788888887766
Q ss_pred HHHHHHHHHHHHHhhhc--ccc------------cccCCCCCccccCchhHHHH---HHHHhhccccchhhHHhhccCCC
Q 008754 315 GVIASILVVLCLFWVGL--VDQ------------VNIHSKGTPLNLATLPVAIG---LYGYCYSGHAVFPNIYTSMAQPN 377 (554)
Q Consensus 315 ~~~~~i~~~~~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~a~~---~~~faf~g~~~i~~i~~emk~p~ 377 (554)
-.+..++..+.+.+... .++ ++........++......+. ...++..+++....=.=..|+++
T Consensus 188 Q~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~~ 267 (483)
T PRK09442 188 QGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDSK 267 (483)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCHH
Confidence 54443332222211110 000 00000000111111111111 12233344443322223456777
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 008754 378 QFPKVLITCFLICTAMYAGVAYMGYT 403 (554)
Q Consensus 378 ~~~~~~~~s~~~~~~lY~~vg~~gy~ 403 (554)
..+|...++..+...+++...+.|..
T Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~G~~ 293 (483)
T PRK09442 268 ALHRGIIIGTIVVGFLMFGMHLAGAL 293 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888877777667777666555533
No 66
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.40 E-value=0.00022 Score=75.49 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=87.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+.+++...+.+..+.+|++ +++.|-...+.|+.+....+...+........+.+-. |+.+..|.+|+.++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRL-RRSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHH-HHTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhh-cccchhhhhhhhhhhcCCch
Confidence 688999999999999999986 7888877777787533222222222333344445544 46667899999999999998
Q ss_pred --HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 240 --RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 240 --~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
+.+..+..++.........+...+..++.+++ .+ .....++..++++..+..-.++...+...+-.+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~----------~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IP----------YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccc-hh----------hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 66666656666667777778888888887764 11 233444555555556666677777776665444
Q ss_pred HH
Q 008754 318 AS 319 (554)
Q Consensus 318 ~~ 319 (554)
..
T Consensus 153 i~ 154 (406)
T PF00474_consen 153 IM 154 (406)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=98.38 E-value=0.0013 Score=69.52 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=93.8
Q ss_pred CChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccC
Q 008754 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRD 304 (554)
Q Consensus 225 ~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~ 304 (554)
.++.-+.+..||.+|..+..++..+...+-........+..+..+++ .. .. ...++..++..+..+. .
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~---------~~-~~~~i~~~l~~~~~~~-G 138 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LD---------IN-LLIVLSGLLMTVTAYF-G 138 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CC---------HH-HHHHHHHHHHHHHHHH-H
Confidence 48889999999999999988877776666555555556666655442 11 01 1233333444444333 3
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHhhhcccccccC--CCCCccccCchhHHHHHHHHhhcc-ccchhhHHhhccCCCCchh
Q 008754 305 LTVLSYISAGGVIASILVVLCLFWVGLVDQVNIH--SKGTPLNLATLPVAIGLYGYCYSG-HAVFPNIYTSMAQPNQFPK 381 (554)
Q Consensus 305 l~~l~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~faf~g-~~~i~~i~~emk~p~~~~~ 381 (554)
.+.+.++...+....+...+...+....+..++. ....+.....+..++...+=.+.. -.+.+.+.+..|++++...
T Consensus 139 ~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~ 218 (404)
T PRK11017 139 ISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVL 218 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceee
Confidence 4444444444433333322222221111110110 000111223555555554444433 4688899999998887556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008754 382 VLITCFLICTAMYAGVAYMGYTMFGES 408 (554)
Q Consensus 382 ~~~~s~~~~~~lY~~vg~~gy~~fG~~ 408 (554)
....++.+...+..++|...-...|+.
T Consensus 219 ~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 219 ATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 666676677777777777666666654
No 68
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.28 E-value=0.0036 Score=65.49 Aligned_cols=358 Identities=15% Similarity=0.097 Sum_probs=175.3
Q ss_pred CCCHHHHHHHHHHhhhhhhhchhHHHH-HhhcHH-HHHHHHHHHHHHHHHHHHH-HHhhhhCCCCCChHHHHHHHhchhh
Q 008754 163 QSSYAQALLNGMNVLCGVGILSTPYAA-KEGGWF-GLLILVAFGVLSFYTGILL-RRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 163 ~~s~~~a~~~li~~iiG~GiLslP~a~-~~~G~~-g~ill~~~~~ls~~t~~~L-~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
........+.....-+|.|-++.-... ++-|+- ..++++ ..+..+-.+.+ .|.. ...| ++..|.+++.++|+.
T Consensus 16 ~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vill--s~l~~~~~Q~~~arLg-ivTG-~~laq~ir~~y~~~~ 91 (416)
T COG1914 16 LLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILL--SNLMAYILQELSARLG-IVTG-KGLAEAIRERYLPGL 91 (416)
T ss_pred HHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHhC-CcHHHHHHHHccchH
Confidence 345555566666666677655555444 355553 222221 11122222211 2222 2233 589999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHH
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIAS 319 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~ 319 (554)
.++..+...+.-.+++++..+..+--++-++.-. ..+..+++++..+.+...++.+.+-.+.. ...
T Consensus 92 ~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip-----------~~~g~iItav~~~iil~~~~~r~~E~~v~---~l~ 157 (416)
T COG1914 92 GILLWILAEIAGIATDIAEVAGIAIALNLLFGIP-----------LIIGAVITAVDVLIILLLKGYRLLERVVL---ILG 157 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHHHHHHHhcchHHHHHHHH---HHH
Confidence 9999999988888999999888888887776321 23444455554444444444444444332 222
Q ss_pred HHHHHHHHhhhcccccccC--CCC-Ccccc---CchhHHHHHHHHhhccccchhh---HHh-hccCCC---Cch---hHH
Q 008754 320 ILVVLCLFWVGLVDQVNIH--SKG-TPLNL---ATLPVAIGLYGYCYSGHAVFPN---IYT-SMAQPN---QFP---KVL 383 (554)
Q Consensus 320 i~~~~~~~~~~~~~~~~~~--~~~-~~~~~---~~~~~a~~~~~faf~g~~~i~~---i~~-emk~p~---~~~---~~~ 383 (554)
+.++++..+......+.+. ... ...+. ..+..+++++.-.=+.|..... +++ ..++++ +.+ ...
T Consensus 158 ~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~~~d~ 237 (416)
T COG1914 158 LVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYSRIDT 237 (416)
T ss_pred HHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHHHHHH
Confidence 2233333333222222211 001 10011 2233333333222222111110 011 101221 122 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCch-h---hh----hcCCCchhHHHHHHHHHHHH----hhhhhhcchhhhHHHHHH
Q 008754 384 ITCFLICTAMYAGVAYMGYTMFGESTL-S---QF----TLNMPQDLVATKIAVWTTVV----NPFTKYALTISPVAMSLE 451 (554)
Q Consensus 384 ~~s~~~~~~lY~~vg~~gy~~fG~~~~-~---~i----~~n~p~~~~~~~i~~~~~~i----~~~~s~pl~~~p~~~~l~ 451 (554)
.+++....++...+-.+....|..... . +. ...-| .....+..+..+ .-.++-...-+.....++
T Consensus 238 ~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~---~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~ 314 (416)
T COG1914 238 IIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAP---LLGSAAFVLFGVALLAAGLSSTVVATYAGQIVME 314 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhh---hhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHH
Confidence 444545555555544444444432221 1 11 11111 001111111111 111122222233334566
Q ss_pred hhcCCCCCCcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcC---c--cchHHHHHH
Q 008754 452 ELIPSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRG---K--ATRLQVALC 526 (554)
Q Consensus 452 ~~l~~~~~~~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~---~--~~~~~~~~~ 526 (554)
++++...++ +.+|...|.+..+++.++.+.+.+...++.+.+.+.+..+-+.++.++++..+|+ + .++|.++..
T Consensus 315 g~~~~~~~~-~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~ 393 (416)
T COG1914 315 GFLNWRIPL-WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLG 393 (416)
T ss_pred hhhcccCch-HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHH
Confidence 666654333 5677777877777766666666689999999999988888888888887776664 2 345666666
Q ss_pred HHHHHHHHHHhHHhHH
Q 008754 527 VIIIVAGVVSSAIGSY 542 (554)
Q Consensus 527 ~~ii~~g~~~~v~gty 542 (554)
|.+.++-....+.-.+
T Consensus 394 ~~v~~~i~~L~i~li~ 409 (416)
T COG1914 394 WIVVILIVALNIILLV 409 (416)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655554444444333
No 69
>PRK09395 actP acetate permease; Provisional
Probab=98.26 E-value=0.011 Score=65.24 Aligned_cols=146 Identities=12% Similarity=0.068 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhc-hh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFG-TA 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G-~~ 238 (554)
.|+.+++...+.+..+.++++ .++.|-.....|+.+....+-..+.......++.+-. |+.+..|++|..++-|| |+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~-r~~g~~T~~d~l~~Rygs~~ 146 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERL-RNLGKYTFADVASYRLKQGP 146 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCccHHHHHHHHcCCch
Confidence 788999999999999988886 8889977777787543222211111112223344444 55667999999998898 55
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
.|.+..+...+........-+...+..++.+++ .+ .....++..++++..+..-.++...+...+-.+.
T Consensus 147 ~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~----------~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~ii 215 (551)
T PRK09395 147 IRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LN----------YHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVL 215 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 788877776666666666666777777777653 11 2233444555555566666788777777654433
No 70
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.26 E-value=0.0068 Score=66.62 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHHHHhhhhh-hhchhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCChHHHHHHHhc-h
Q 008754 161 SRQSSYAQALLNGMNVLCGV-GILSTPYAAKEGGWFGLLILVAFGVLSF-YTGILLRRCLDSEPGLETYPDIGQAAFG-T 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~-GiLslP~a~~~~G~~g~ill~~~~~ls~-~t~~~L~~~~~~~~~~~~y~~l~~~~~G-~ 237 (554)
.|+.+++...+.+..+.+++ ..+..|-.....|+-+....+ ...+.+ ....++.+-. |+.+..|.+|..++=|| |
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~l-rr~g~~T~~d~l~~Rf~s~ 143 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERL-RNLGRYTFADVASYRLKQR 143 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHH-HHcCCccHHHHHHHHcCCc
Confidence 78888898888888887776 488999777677765433221 111122 2233344444 45567899999988887 5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
..|.+..+...+......+..+...+..++.+++- + .....++..++++..+..-.++...++..+-.+
T Consensus 144 ~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 144 PIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-N----------YHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56777776666666666666777777777777631 1 223344445555556666688877777766544
Q ss_pred HH
Q 008754 318 AS 319 (554)
Q Consensus 318 ~~ 319 (554)
..
T Consensus 213 im 214 (549)
T TIGR02711 213 LL 214 (549)
T ss_pred HH
Confidence 33
No 71
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.19 E-value=0.017 Score=62.65 Aligned_cols=142 Identities=21% Similarity=0.132 Sum_probs=100.9
Q ss_pred CCCCCHHHHHHHHHHhhhh-hhhchhHHHHHhhcHHH-HHHHH---HHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHh
Q 008754 161 SRQSSYAQALLNGMNVLCG-VGILSTPYAAKEGGWFG-LLILV---AFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAF 235 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG-~GiLslP~a~~~~G~~g-~ill~---~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~ 235 (554)
+|+.+.+-..+...-+.++ --++++|....+.|+.+ .+... ...+...+-...+.+.. ++.+..|.+|+.++-|
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~Rf 115 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEARF 115 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHHHc
Confidence 7888888777777777777 56999998888888752 22221 22233334555566665 7788899999999999
Q ss_pred c-hhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHH
Q 008754 236 G-TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAG 314 (554)
Q Consensus 236 G-~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~ 314 (554)
| ++.|.+..++..+.....+..-+...+..++..+. .+ .....++.++++..-+.+-.++...++..+
T Consensus 116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~----------~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 116 GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS----------YVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC----------HHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 9 99999999999999999999999999998866664 32 122233344455555555577777776655
No 72
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.14 E-value=0.023 Score=62.67 Aligned_cols=146 Identities=12% Similarity=0.049 Sum_probs=92.2
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchh-
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA- 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~- 238 (554)
+|+.+++...+.+..+.++++ +++.|......|+.+....+-..........++..-. |+.+..|.+|..++-||++
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~-rr~~~~T~~e~l~~Rf~s~~ 109 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYL-RKFGKYTVPDFIGDRYYSNT 109 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCccHHHHHHHHhCCCc
Confidence 789999999999999999775 8888876666676432222111111112334444544 5567789999998888855
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
.|.+..+...+.........+...+..++.+++- + .....++..++++..+.+-.++...+.-.+-.+.
T Consensus 110 ~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-~----------~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ii 178 (552)
T TIGR03648 110 ARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-D----------FETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYIV 178 (552)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5777766666666666666666677777776631 1 2233344445555555566788777777665433
No 73
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.02 E-value=8.1e-05 Score=79.62 Aligned_cols=291 Identities=13% Similarity=0.056 Sum_probs=138.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhh--cHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEG--GWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~--G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~ 237 (554)
+|+.++++-+..-.+..+....+.+-...... ++- +++.+++..++...-..+..... .+.| .++.-+.+..||.
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G-~r~G-l~~~v~sR~~FG~ 83 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG-PRTG-LPTMVLSRASFGY 83 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH-HCC----HHHHTTTTS-T
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc-cccC-CCchhcchhccCc
Confidence 56667788777777777766666555444333 344 55555555555544444444444 3444 4778889999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhcccccc---CCC----ccccchhHHHHHHHHHHHhhhccccCCchhhH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHL---SFG----GFYLNSHHLFALMTTLAVLPTCWLRDLTVLSY 310 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~---~~~----~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~ 310 (554)
+|..+..++..+...|-......+.++.+..+.+.... ..+ .... ......++..++..+.. ....+.+..
T Consensus 84 ~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~-~~g~~~l~~ 161 (440)
T PF02133_consen 84 RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIAL-PLWVCFFIFWLIQTLFA-IYGMKALRR 161 (440)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH------------HHHHHHHHHHHHHH-CTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchh-hHHHHHHHHHHHHHHHH-hcCHHHHHh
Confidence 99999999988888888888888899999887764321 000 0000 00111112222222222 224444444
Q ss_pred hHHHHHHHHHHHHH-HHHhhhcccccc--cCCCCCccccCchhHHHHHHHHhhccc-cchhhHHhhccCCCCchhHHHHH
Q 008754 311 ISAGGVIASILVVL-CLFWVGLVDQVN--IHSKGTPLNLATLPVAIGLYGYCYSGH-AVFPNIYTSMAQPNQFPKVLITC 386 (554)
Q Consensus 311 ~s~~~~~~~i~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~faf~g~-~~i~~i~~emk~p~~~~~~~~~s 386 (554)
+............+ ...+.....+.+ .+....+.....+..++...+-.+..+ .+.+.+.+.+|++++-.+....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~ 241 (440)
T PF02133_consen 162 LAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWLG 241 (440)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHHH
T ss_pred HHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEeeh
Confidence 44433333222222 222221111111 111111111113444443333332222 45678899999888766777777
Q ss_pred HHHHHHHHHHHHHHHHH----HhcCCchhh--hhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcC
Q 008754 387 FLICTAMYAGVAYMGYT----MFGESTLSQ--FTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIP 455 (554)
Q Consensus 387 ~~~~~~lY~~vg~~gy~----~fG~~~~~~--i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~ 455 (554)
+....+....+++++.. ..++...+. ++..+...................+.-....++...++...++
T Consensus 242 ~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~~~~~ 316 (440)
T PF02133_consen 242 FPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQNIFP 316 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHHCCST
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHccc
Confidence 76666666666665543 333332222 2333322211111222222223333444566777778888777
No 74
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.97 E-value=0.027 Score=59.42 Aligned_cols=353 Identities=14% Similarity=0.101 Sum_probs=155.0
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGG--WF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGT 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G--~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~ 237 (554)
+|+=++++-+..=.+...-.+-..+-...-+.| +. .++.+.+.-++....+.+-.+.. .+.+ ..|+.+.+..||-
T Consensus 38 ~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G-~~~g-IpFpv~~RaSFGi 115 (497)
T COG1953 38 QRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAG-SKYG-IPFPVLSRASFGI 115 (497)
T ss_pred cCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcc-cccC-CCchHHHHHHHhh
Confidence 667777766655554444443222222222233 22 33333332222222222222222 2222 5899999999998
Q ss_pred hhHHH---HHHHHHHHHhHHHHHHH-HHHHhhhhhhccccccCCC---ccccchhHHHHHHHHHHHhhhccccCCchhhH
Q 008754 238 AGRIA---VSVILYAELYACCIEYI-ILESDNLSSLFPNAHLSFG---GFYLNSHHLFALMTTLAVLPTCWLRDLTVLSY 310 (554)
Q Consensus 238 ~g~~~---~~i~~~~~~~g~~~~y~-i~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~ 310 (554)
+|..+ +..+..+.-||...-.- ..+.-.+..+++......+ ..-.....+...+..-++-.++..+..+.+++
T Consensus 116 ~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~ 195 (497)
T COG1953 116 YGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRK 195 (497)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 87543 23333333333222110 0011112233333211111 00111122333333333333445557777777
Q ss_pred hHHHHHHHHHHHHHHH-Hhhhccc-c---cccCCCCCccccCchhHHHHHHHHhhcc----ccchhhHHhhccCCCCchh
Q 008754 311 ISAGGVIASILVVLCL-FWVGLVD-Q---VNIHSKGTPLNLATLPVAIGLYGYCYSG----HAVFPNIYTSMAQPNQFPK 381 (554)
Q Consensus 311 ~s~~~~~~~i~~~~~~-~~~~~~~-~---~~~~~~~~~~~~~~~~~a~~~~~faf~g----~~~i~~i~~emk~p~~~~~ 381 (554)
+-..+-.++.+..+.+ +|..... . ....+.+...........+......... .-|+|...+.-|+|+...+
T Consensus 196 ~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~~~~~~ 275 (497)
T COG1953 196 FETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQKAQIW 275 (497)
T ss_pred HHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCChhhhhh
Confidence 7666555554444433 3332111 1 1111111111111111222222222222 3578888888888775333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhcCCCchhHHH-HHHHHHHHHhhhhhhcchhhhHHHHHHhhc
Q 008754 382 ----VLITCFLICTAMYAGVAYMGYTMFGEST--LSQFTLNMPQDLVAT-KIAVWTTVVNPFTKYALTISPVAMSLEELI 454 (554)
Q Consensus 382 ----~~~~s~~~~~~lY~~vg~~gy~~fG~~~--~~~i~~n~p~~~~~~-~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l 454 (554)
.+.+.+.+..++=++++...+..||+.. +-++..++++..... .+...+.+.++-+...-...+...-+..++
T Consensus 276 gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~D~s~l~ 355 (497)
T COG1953 276 GQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGYDLSALF 355 (497)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHHHHHHhc
Confidence 3333444444444445556788899984 445777777654443 333333333444445555666666777777
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCc
Q 008754 455 PSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGK 517 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~ 517 (554)
|+.-...+-..+.....+++.+.-+--.-..|..+++..|++.+.+...++-= |+.+||++
T Consensus 356 Pk~in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaD--yflirk~~ 416 (497)
T COG1953 356 PKYINIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIAD--YFLVRKGR 416 (497)
T ss_pred ccccchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHH--HHhhhcCc
Confidence 77432101111111111111111111112356777777777777655544332 44455543
No 75
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.87 E-value=0.059 Score=57.42 Aligned_cols=92 Identities=16% Similarity=0.088 Sum_probs=54.1
Q ss_pred hhhhhhchh-----HHHH---HhhcHH---HHHHHHHHHHHHHHHHHHH-HHhhhhCCCCCChHHHHHHHhchhhHHHHH
Q 008754 177 LCGVGILST-----PYAA---KEGGWF---GLLILVAFGVLSFYTGILL-RRCLDSEPGLETYPDIGQAAFGTAGRIAVS 244 (554)
Q Consensus 177 iiG~GiLsl-----P~a~---~~~G~~---g~ill~~~~~ls~~t~~~L-~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~ 244 (554)
.+|.|++.. |-.+ .++|-- .++..++.+.+..+..+.+ .|.. ...| ++..|++++-+||+..++..
T Consensus 36 ~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~Rlg-ivTG-~~l~~~ir~~~~~~~~~~~~ 113 (439)
T PRK00701 36 FLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLG-IATG-RDLAQACRDRYPRPVVWFLW 113 (439)
T ss_pred HcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhh-hhcC-CCHHHHHHHHCCchHHHHHH
Confidence 566666555 3222 345543 3333344444444433333 2222 2333 68999999999999888877
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhc
Q 008754 245 VILYAELYACCIEYIILESDNLSSLF 270 (554)
Q Consensus 245 i~~~~~~~g~~~~y~i~~~~~l~~l~ 270 (554)
+...+...+..+..++..+--++-++
T Consensus 114 ~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 114 IQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77666666777777766666665554
No 76
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.80 E-value=0.053 Score=56.52 Aligned_cols=292 Identities=12% Similarity=0.080 Sum_probs=130.3
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcH-HHHHHH----HHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGW-FGLLIL----VAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAA 234 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~-~g~ill----~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~ 234 (554)
+.-.|...-++..+++.+|-| +--.||...+.|- .-++.. +..|+-....=..++|.. +.....+|..+..
T Consensus 6 e~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~-~~~~~~a~~~l~~-- 82 (439)
T COG0733 6 EQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRG-RKNAVGAFRKLAP-- 82 (439)
T ss_pred cchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhc-CCChhHHHHHhcc--
Confidence 445677888899999999999 9999988765443 222222 222322223333334433 3344456666654
Q ss_pred hchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCC--cc--------ccc-h-hHHHHHHHHHHHhhhccc
Q 008754 235 FGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFG--GF--------YLN-S-HHLFALMTTLAVLPTCWL 302 (554)
Q Consensus 235 ~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~--~~--------~~~-~-~~~~~iv~~li~~pl~~~ 302 (554)
+|++++ +.+...+..+..+.-|.++.|=.+..++.......+ .. ... . ......+.++++.-+...
T Consensus 83 -~~~~~~-~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~ 160 (439)
T COG0733 83 -KKKWEW-IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVS 160 (439)
T ss_pred -Cccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 233322 222323333344444555555544444322211100 00 000 0 011111111222222223
Q ss_pred cCCch-hhHhHHHHHHHHHHHHHHHHhhhcc-c----ccc--cCCCCCc-cccCchhHHHHHHHHhhcc-ccchhhHHhh
Q 008754 303 RDLTV-LSYISAGGVIASILVVLCLFWVGLV-D----QVN--IHSKGTP-LNLATLPVAIGLYGYCYSG-HAVFPNIYTS 372 (554)
Q Consensus 303 ~~l~~-l~~~s~~~~~~~i~~~~~~~~~~~~-~----~~~--~~~~~~~-~~~~~~~~a~~~~~faf~g-~~~i~~i~~e 372 (554)
|.+++ +.+.+.+-+-+..++.+.++.+... + +.. +.++... .|+..+..|+|...|+.+- ........+.
T Consensus 161 ~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSY 240 (439)
T COG0733 161 RGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSY 240 (439)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34332 4444433333333333333222221 1 111 2222222 2367788899999998864 4455556667
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHH--H-HhcCCch----------hhhhcCCCchhHHHHHHHHHHHHhhhhhh
Q 008754 373 MAQPNQFPKVLITCFLICTAMYAGVAYMGY--T-MFGESTL----------SQFTLNMPQDLVATKIAVWTTVVNPFTKY 439 (554)
Q Consensus 373 mk~p~~~~~~~~~s~~~~~~lY~~vg~~gy--~-~fG~~~~----------~~i~~n~p~~~~~~~i~~~~~~i~~~~s~ 439 (554)
++|+++.++........-+.+=++.|++-+ . .||.+.. +++...+|-+.....+-..+.++.-+++-
T Consensus 241 L~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~ 320 (439)
T COG0733 241 LSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSA 320 (439)
T ss_pred cCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 777777665333333333333333332222 1 2232211 23445556443333333344444444444
Q ss_pred cchhhhHHHHHHhhcCCC
Q 008754 440 ALTISPVAMSLEELIPSN 457 (554)
Q Consensus 440 pl~~~p~~~~l~~~l~~~ 457 (554)
--.+.+....+.+.+..+
T Consensus 321 iSmlE~~va~l~~~~~~~ 338 (439)
T COG0733 321 ISMLEVLVAALIDKFGIS 338 (439)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 444455555555555443
No 77
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.76 E-value=0.0016 Score=69.82 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=43.2
Q ss_pred chhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHHHHHHHHHHHHHHH
Q 008754 348 TLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMYAGVAYMGYT 403 (554)
Q Consensus 348 ~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~~~lY~~vg~~gy~ 403 (554)
++...|+++.=+-.|...=.+.-.|+|+|+| +|+-...++...+++|+++.++.-.
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhcc
Confidence 3445666655555555555667789999998 9999999999999999998876543
No 78
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.71 E-value=0.12 Score=56.17 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=86.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH----hhhhCCCCCChHHHHHHHh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRR----CLDSEPGLETYPDIGQAAF 235 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~----~~~~~~~~~~y~~l~~~~~ 235 (554)
+|+.+++-..+.+..+.+++. +++.|......|+.+....+...+........+.. ..+++.+..|.+|+.++-|
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ry 114 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRF 114 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHh
Confidence 788999999998888888776 67788666667875322211111111222223322 2211567789999999999
Q ss_pred chhhH---HHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhH
Q 008754 236 GTAGR---IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYIS 312 (554)
Q Consensus 236 G~~g~---~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s 312 (554)
|++.+ .+..++..+........-+...+..++.+++ .+ .....++..++++.-+..-.++...+..
T Consensus 115 g~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~----------~~~~iii~~~i~~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 115 NDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LD----------YKTGLLIGALIIVIYTFFGGFLAVSWTD 183 (487)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc----------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 96543 3344444444434444555566666766653 11 2233444445555556666788777777
Q ss_pred HHHHHHHH
Q 008754 313 AGGVIASI 320 (554)
Q Consensus 313 ~~~~~~~i 320 (554)
.+-.+..+
T Consensus 184 ~iQ~~i~~ 191 (487)
T TIGR02121 184 FVQGLLMF 191 (487)
T ss_pred HHHHHHHH
Confidence 66554433
No 79
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.68 E-value=0.13 Score=55.99 Aligned_cols=147 Identities=14% Similarity=0.067 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHH----HHhhhhCCCCCChHHHHHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLS-FYTGILL----RRCLDSEPGLETYPDIGQAA 234 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls-~~t~~~L----~~~~~~~~~~~~y~~l~~~~ 234 (554)
+|+.+++...+.+..+.+++. +++.|....+.|+.+....+ ...+. .....++ ..-..++.+..|.+|..++-
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~R 117 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAI-GLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGR 117 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHH
Confidence 789999999999999999987 77888776777865321111 11111 1111121 11122456778999999999
Q ss_pred hchhh---HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHh
Q 008754 235 FGTAG---RIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYI 311 (554)
Q Consensus 235 ~G~~g---~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~ 311 (554)
||++. +.+..++..+.....+..-+...+..++.+++ .+ .....++..++++..+..-.++...+.
T Consensus 118 y~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~aV~~T 186 (502)
T PRK15419 118 FEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-MS----------YETALWAGAAATILYTFIGGFLAVSWT 186 (502)
T ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99643 33444444444444555555566666766653 11 223444555566666667788888887
Q ss_pred HHHHHHHH
Q 008754 312 SAGGVIAS 319 (554)
Q Consensus 312 s~~~~~~~ 319 (554)
-.+-.+.+
T Consensus 187 D~iQ~~im 194 (502)
T PRK15419 187 DTVQASLM 194 (502)
T ss_pred HHHHHHHH
Confidence 76655443
No 80
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.67 E-value=0.1 Score=54.88 Aligned_cols=146 Identities=17% Similarity=0.104 Sum_probs=83.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHH---HHHHHHHHHHHHHHhhhhCCCCCCh-----HHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVA---FGVLSFYTGILLRRCLDSEPGLETY-----PDIG 231 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~---~~~ls~~t~~~L~~~~~~~~~~~~y-----~~l~ 231 (554)
+++.|.+|+.+..+.+.+|+| |+.+|.|++.+|.-++..+-+ .+..+.|.-..|..-.+++++..+| ..+-
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 356899999999999999998 999999988777435444433 3334444444454444334444447 6777
Q ss_pred HHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHh
Q 008754 232 QAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYI 311 (554)
Q Consensus 232 ~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~ 311 (554)
+...|||...+..++++..+...+.......++.++..+ +. + .....++.++ +.-......++.+..+
T Consensus 124 ~gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~-~~----~------~~v~~i~l~~-l~~~vi~GGik~Ia~v 191 (425)
T TIGR00835 124 KGLGMRWLAVLFAVFLIASFGIGNMVQANAIASALSNAF-NV----P------KLVTGIVLTV-LTALIIFGGLKRIAKI 191 (425)
T ss_pred HHhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHc-CC----c------HHHHHHHHHH-HHHHHHhcCchHHHHH
Confidence 777788877777766222222223333344444444322 11 0 2222333333 3333344577777777
Q ss_pred HHHHHHH
Q 008754 312 SAGGVIA 318 (554)
Q Consensus 312 s~~~~~~ 318 (554)
+...+-.
T Consensus 192 ~~~lvP~ 198 (425)
T TIGR00835 192 SSVVVPF 198 (425)
T ss_pred HHHHHHH
Confidence 7554433
No 81
>PRK10484 putative transporter; Provisional
Probab=97.67 E-value=0.14 Score=55.99 Aligned_cols=157 Identities=11% Similarity=0.056 Sum_probs=83.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
+|+.+++-..+.+..+.++++ +++.|-.....|+.........++........+..-. ++.+..|.+|+.++-||++.
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~-~r~~~~T~~e~l~~Ryg~~~ 115 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRY-LKSGITTIPDFLEERYDKTT 115 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHhcCchh
Confidence 889999999999999988887 7888866656676432211111111112223333333 34677899999999999988
Q ss_pred HHHHHHHHHHHHhHH-HHHHHHHHHhhhhhhccccccCCCccccchhHHH-HHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 240 RIAVSVILYAELYAC-CIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLF-ALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~-~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
+.+...+..+..... +...+...+..+..++.... ..+.....-... .++..++++..+..-.++...+.-.+-.+
T Consensus 116 ~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~--~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ~v 193 (523)
T PRK10484 116 RRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE--LLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTINGI 193 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 877766544432222 22222223333333321100 001111001111 22233444555566688888887766554
Q ss_pred HHH
Q 008754 318 ASI 320 (554)
Q Consensus 318 ~~i 320 (554)
..+
T Consensus 194 im~ 196 (523)
T PRK10484 194 GLL 196 (523)
T ss_pred HHH
Confidence 433
No 82
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=97.48 E-value=0.14 Score=55.98 Aligned_cols=290 Identities=15% Similarity=0.172 Sum_probs=132.9
Q ss_pred CCCCHHHHHHHHHHhhhhhh-hchhHHHH-HhhcHH----HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHh
Q 008754 162 RQSSYAQALLNGMNVLCGVG-ILSTPYAA-KEGGWF----GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAF 235 (554)
Q Consensus 162 ~~~s~~~a~~~li~~iiG~G-iLslP~a~-~~~G~~----g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~ 235 (554)
+-.+..+-++..++..+|.| +.-.|+-. +++|.. -.+.++++|+-..+.-..+++.. +.+....|.+++...=
T Consensus 3 ~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~-~~~~~~~~~~~~p~~~ 81 (523)
T PF00209_consen 3 KWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYS-RSGPIGAWKRLCPIFK 81 (523)
T ss_dssp --S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTSHHHS-HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 44577888999999999999 99999876 566643 33333455555556666667766 4555455655554322
Q ss_pred chhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhcccccc---------CC---------------------------Cc
Q 008754 236 GTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHL---------SF---------------------------GG 279 (554)
Q Consensus 236 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~---------~~---------------------------~~ 279 (554)
| +.+..++..+..++-|.+..+..+..++..... .. ..
T Consensus 82 g------iG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
T PF00209_consen 82 G------IGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSWNTPNCYDIYSNCNCSNSSSYNFTQRISPA 155 (523)
T ss_dssp T------HHHH---HHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred c------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 122222222223333333333333322211000 00 00
Q ss_pred -ccc--------------ch---hHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHHHHHHHHHhhhcc-----cccc
Q 008754 280 -FYL--------------NS---HHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLV-----DQVN 336 (554)
Q Consensus 280 -~~~--------------~~---~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i~~~~~~~~~~~~-----~~~~ 336 (554)
... .. +....++.+.++..++..|.++...++....+..-.+++++++..+.. ++..
T Consensus 156 ~~ff~~~vl~~s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~ 235 (523)
T PF00209_consen 156 EEFFYREVLQISDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLK 235 (523)
T ss_dssp -------------------------HHHHHHHHHHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHHHHHHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceE
Confidence 000 00 011122233334455667777777666554433222222222222221 1111
Q ss_pred --cCCCCC-ccccCchhHHHHHHHHhhcc-ccchhhHHhhccCCCCchhHHHHHHHHHHHHHHH-----HHHHHHHHhc-
Q 008754 337 --IHSKGT-PLNLATLPVAIGLYGYCYSG-HAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAG-----VAYMGYTMFG- 406 (554)
Q Consensus 337 --~~~~~~-~~~~~~~~~a~~~~~faf~g-~~~i~~i~~emk~p~~~~~~~~~s~~~~~~lY~~-----vg~~gy~~fG- 406 (554)
+.++.. ..+..-+..|++...|+.+- ...+....+.+|+.++..+...+....-+++.++ +++.|+.+..
T Consensus 236 ~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~ 315 (523)
T PF00209_consen 236 FLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANEL 315 (523)
T ss_dssp HHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHH
T ss_pred EEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHHhhcccCC
Confidence 111111 12233456899999999974 5666666677777777665333333333222222 2333443321
Q ss_pred --------CC-------chhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCC
Q 008754 407 --------ES-------TLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNH 458 (554)
Q Consensus 407 --------~~-------~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~ 458 (554)
++ +.+.+..++|.......+-..+..+.-+++.-..+.+....+++.++..+
T Consensus 316 ~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~~ 382 (523)
T PF00209_consen 316 GVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEFPISR 382 (523)
T ss_dssp HHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---
T ss_pred CCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecCccch
Confidence 01 11123455665555554555555555555555566677777777666643
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.32 E-value=0.22 Score=51.73 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=52.2
Q ss_pred CChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhcc--c
Q 008754 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCW--L 302 (554)
Q Consensus 225 ~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~--~ 302 (554)
++..|..++.+||+..+...+...+......+..++..+.-++-++ +.+ ...+.+++++.++.+.+ .
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~----------~~~~~~~~~~~~~~ll~~~~ 110 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP----------LWIWVLLVAVIAILLLWLSS 110 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC----------cHHHHHHHHHHHHHHHHHHh
Confidence 5888889999999998888888777777777777777777776665 222 23444444444444444 5
Q ss_pred cCCchhhHhHH
Q 008754 303 RDLTVLSYISA 313 (554)
Q Consensus 303 ~~l~~l~~~s~ 313 (554)
++.+.+..+..
T Consensus 111 ~~y~~~E~~~~ 121 (358)
T PF01566_consen 111 GGYRRLERILK 121 (358)
T ss_pred ccchHHHHHHH
Confidence 56666666543
No 84
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.28 E-value=0.05 Score=55.32 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh-hCCCCCChHHHHHHHhchhh
Q 008754 162 RQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLD-SEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 162 ~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~-~~~~~~~y~~l~~~~~G~~g 239 (554)
-..+.+..+.+=..++-|+|-..=|-.-.+-||+ +.+.+++.+++.---.-+..-... |+.| ++.+|++++..||++
T Consensus 50 vP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G-~Si~~i~~~~lG~~~ 128 (376)
T PF02554_consen 50 VPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKG-KSIGEIAGKYLGKRA 128 (376)
T ss_pred CCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCC-ccHHHHHHHHHHHHH
Confidence 3456677788888999999999899777899999 888776544444332222222111 4444 799999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 008754 240 RIAVSVILYAELYACCIEYIILESDNLSS 268 (554)
Q Consensus 240 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~ 268 (554)
+.++.+..++.+.....++....++.+..
T Consensus 129 ~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 129 KKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999888888888888777776644
No 85
>PHA02764 hypothetical protein; Provisional
Probab=96.80 E-value=0.58 Score=46.53 Aligned_cols=90 Identities=16% Similarity=0.082 Sum_probs=61.4
Q ss_pred CCCCCHHHHHH-HHHHhhhhhhhchhHHHHHhh--cH--H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHH
Q 008754 161 SRQSSYAQALL-NGMNVLCGVGILSTPYAAKEG--GW--F-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAA 234 (554)
Q Consensus 161 ~~~~s~~~a~~-~li~~iiG~GiLslP~a~~~~--G~--~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~ 234 (554)
-|+.+.+.+++ |+.+...|.++ +.|+-+... |. + +.++..+.++....|...++...++.+|.+.| .+++
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVY---ISRA 86 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAY---IRTA 86 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEE---hHHh
Confidence 57788899888 55555555554 556533222 32 2 44444455556667777888888888898888 8999
Q ss_pred hchhhHHHHHHHHHHHHhHH
Q 008754 235 FGTAGRIAVSVILYAELYAC 254 (554)
Q Consensus 235 ~G~~g~~~~~i~~~~~~~g~ 254 (554)
||++.++++.+..++...+.
T Consensus 87 FGP~~GFLvG~a~WLtl~~G 106 (399)
T PHA02764 87 FSSKFYTIFGISLWLTYVLS 106 (399)
T ss_pred hCccHHHHHHHHHHHHHHhh
Confidence 99999999888777654433
No 86
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.67 E-value=1.1 Score=47.10 Aligned_cols=178 Identities=14% Similarity=0.122 Sum_probs=100.2
Q ss_pred HHhhhhCCCCCChHHHH-HHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHH
Q 008754 215 RRCLDSEPGLETYPDIG-QAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTT 293 (554)
Q Consensus 215 ~~~~~~~~~~~~y~~l~-~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~ 293 (554)
.+-. |+-|.+|++|.. +|.--++.|++..+.-++..+...+.-++..+..+..++.... ..-.++..
T Consensus 95 A~~L-Rk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~-----------~vgv~ig~ 162 (529)
T COG4147 95 AEYL-RKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPY-----------HVGVVIGG 162 (529)
T ss_pred HHHH-HhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc-----------eeehhhHh
Confidence 3444 677779999985 5555567788877766666666677777888888877775221 12233444
Q ss_pred HHHhhhccccCCchhhHhHHHHHHHHHH----HHHHHHhhhcccc-------cccCC-------CCCccccCchhHHHHH
Q 008754 294 LAVLPTCWLRDLTVLSYISAGGVIASIL----VVLCLFWVGLVDQ-------VNIHS-------KGTPLNLATLPVAIGL 355 (554)
Q Consensus 294 li~~pl~~~~~l~~l~~~s~~~~~~~i~----~~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~a~~~ 355 (554)
++++..+.+-.++..+|++++--+..+. ..+.+.+....+. ...++ .......++....++.
T Consensus 163 ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl 242 (529)
T COG4147 163 ILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISL 242 (529)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHH
Confidence 4455555566888888887664333222 1222222210000 00000 0001112344445544
Q ss_pred HHHhhccccchhhHHhhc-cCCC--CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008754 356 YGYCYSGHAVFPNIYTSM-AQPN--QFPKVLITCFLICTAMYAGVAYMGYTM 404 (554)
Q Consensus 356 ~~faf~g~~~i~~i~~em-k~p~--~~~~~~~~s~~~~~~lY~~vg~~gy~~ 404 (554)
+.--..|...+|++.-.. --|+ .-++.+..+..++..+|+..-+.|+.+
T Consensus 243 ~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 243 GFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433344555556654322 2233 477899999999999999988887753
No 87
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.45 E-value=1.5 Score=46.20 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHhhhhhhhchhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhH
Q 008754 165 SYAQALLNGMNVLCGVGILSTPYAA-KEGG--WF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (554)
Q Consensus 165 s~~~a~~~li~~iiG~GiLslP~a~-~~~G--~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~ 240 (554)
.....-+.+..-..|+|=|-.|-.. +++| |. +.+.+++.++.--.-+.+-. . +.++ ++.+++++.--+.+.
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~--~-~~~~--~~~~l~~~v~~~f~~ 78 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV--A-KSGG--GIEDLASRVGPKFAL 78 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--h-hcCC--CHHHHhcccCcHHHH
Confidence 3455667888889999999999777 4666 55 66666655543322221111 1 2333 788888775433333
No 88
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.013 Score=62.51 Aligned_cols=224 Identities=14% Similarity=0.145 Sum_probs=127.2
Q ss_pred CCHHHHHH-HHHHhhhhhh-hchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHH----HhhhhCCCCCChHHHHHHHhc
Q 008754 164 SSYAQALL-NGMNVLCGVG-ILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLR----RCLDSEPGLETYPDIGQAAFG 236 (554)
Q Consensus 164 ~s~~~a~~-~li~~iiG~G-iLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~----~~~~~~~~~~~y~~l~~~~~G 236 (554)
-++++.++ -.+=.+.|+= .|-++|...|+|.. +++++.+...++..|..--. +|.-+.+| .|. +..+.+|
T Consensus 30 fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg--~yf-lis~slg 106 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG--VYF-LISRSLG 106 (643)
T ss_pred EeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc--EEE-EEEeccc
Confidence 34444443 2222334442 67788999999998 88887766666555443222 22222334 332 2445567
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHH
Q 008754 237 TAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGV 316 (554)
Q Consensus 237 ~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~ 316 (554)
+.-+-.+.+++.+.+...|..|.+.+++.+..++.... .+..+. +..++.++.+.++.. ..+.-+++..+-+
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s----~~~i~g---i~~vt~~ill~i~~a-g~~w~~k~q~~ll 178 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES----KEMIDG---IGSVTVLILLAINVA-GVEWEAKLQIVLL 178 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc----HHHhcc---hhHHHHHHHHHhhhc-cchhHHHHHHHHH
Confidence 76666778888888888899999999999999986542 111111 333444444444433 4444444443222
Q ss_pred HHHHHHHHHHHhhhcc-c-c------ccc----CCCCCccccC---chhHHHHHHHHhhccccchhhHHhhccCCCC-ch
Q 008754 317 IASILVVLCLFWVGLV-D-Q------VNI----HSKGTPLNLA---TLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FP 380 (554)
Q Consensus 317 ~~~i~~~~~~~~~~~~-~-~------~~~----~~~~~~~~~~---~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~ 380 (554)
.++++.+.-+..|.. . + .++ ..++..-++. .++..|+++.=+..|...=.++...+|+|++ .|
T Consensus 179 -~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP 257 (643)
T KOG2083|consen 179 -LILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIP 257 (643)
T ss_pred -HHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcc
Confidence 111111111222211 0 0 000 1111111222 4555566666666666666688899999997 99
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008754 381 KVLITCFLICTAMYAGVAY 399 (554)
Q Consensus 381 ~~~~~s~~~~~~lY~~vg~ 399 (554)
+....++...+.+|+.+..
T Consensus 258 ~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 258 LGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred cchhhhhhhhhhhhhhhhh
Confidence 9999999999999976544
No 89
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=96.29 E-value=1.8 Score=45.35 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=53.8
Q ss_pred HHHhhhhhhhchhHHHHHhhcHH---HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhHHHHHHHHHH
Q 008754 173 GMNVLCGVGILSTPYAAKEGGWF---GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYA 249 (554)
Q Consensus 173 li~~iiG~GiLslP~a~~~~G~~---g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~i~~~~ 249 (554)
....-+|.|-++ +..++|-- .++..++.+.+..+..+.+....-...| ++..|++++.++++.++...+...+
T Consensus 13 va~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg-~~l~~~~r~~~~~~~~~~~~~~~~l 88 (390)
T TIGR01197 13 MSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTG-LDLAEVCREHYPKVPRITLWILAEL 88 (390)
T ss_pred HHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecC-CCHHHHHHHHCCCchHHHHHHHHHH
Confidence 334446666444 22455543 3333344444444444444332212333 6899999999998877776665555
Q ss_pred HHhHHHHHHHHHHHhhhhhhc
Q 008754 250 ELYACCIEYIILESDNLSSLF 270 (554)
Q Consensus 250 ~~~g~~~~y~i~~~~~l~~l~ 270 (554)
...+..+..++..+--++-++
T Consensus 89 ~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 89 AIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666555
No 90
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.12 E-value=0.34 Score=51.66 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh-hCCCCCChHHHHHHHhchhhHH
Q 008754 164 SSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLD-SEPGLETYPDIGQAAFGTAGRI 241 (554)
Q Consensus 164 ~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~-~~~~~~~y~~l~~~~~G~~g~~ 241 (554)
.+.+-.+-+=.-++-|+|.+.=|-.-.+.||+ +.+.+++.+++.---.-++.-... |+.| ++..+++++..|+..+.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G-~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGG-KSIGEIAGKYLGRTAKV 130 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCC-ccHHHHHHHHhhhhHHH
Confidence 45566677777889999999999888999998 888877655544333222222222 4444 79999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhh
Q 008754 242 AVSVILYAELYACCIEYIILESDNLS 267 (554)
Q Consensus 242 ~~~i~~~~~~~g~~~~y~i~~~~~l~ 267 (554)
+..+..++.+....+++.......+.
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98887776666555555555555443
No 91
>PRK15015 carbon starvation protein A; Provisional
Probab=96.04 E-value=0.16 Score=55.36 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHh-hhhCCCCCChHHHHHHHhchhhHHH
Q 008754 165 SYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRC-LDSEPGLETYPDIGQAAFGTAGRIA 242 (554)
Q Consensus 165 s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~-~~~~~~~~~y~~l~~~~~G~~g~~~ 242 (554)
+.+-.+-+=..++-|+|.+.=|..-.+-||+ +.+.+++.+++.---.-+..-. ..|+.| ++..+++++..|++++.+
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~G-rSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDG-RSLGELVKEEMGPTAGVI 162 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCC-ccHHHHHHHHhhHHHHHH
Confidence 3345566778889999999999877799999 8888765444333222222211 114444 799999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhh
Q 008754 243 VSVILYAELYACCIEYIILESDNL 266 (554)
Q Consensus 243 ~~i~~~~~~~g~~~~y~i~~~~~l 266 (554)
..+..++.+.....++..+....+
T Consensus 163 fli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 163 ALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988877777666666666666555
No 92
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=95.56 E-value=3.8 Score=43.11 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHH---HHHHHHHHHHHhhhhCCCCCCh----HHHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGV---LSFYTGILLRRCLDSEPGLETY----PDIGQ 232 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~---ls~~t~~~L~~~~~~~~~~~~y----~~l~~ 232 (554)
+++.|.+|+++..+...+|+| |-...-|+...|.-.+..+-+.++ .+-|+-..|..-.+++.+..+| ....+
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~ 95 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIE 95 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHH
Confidence 668999999999999999999 888999998888766666644444 4445556666655433332233 23467
Q ss_pred HHhchh-hHHHHHHH
Q 008754 233 AAFGTA-GRIAVSVI 246 (554)
Q Consensus 233 ~~~G~~-g~~~~~i~ 246 (554)
+.+|++ ...+..++
T Consensus 96 ~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 96 KGLGSKWLAILFAIF 110 (416)
T ss_pred HHhccchHHHHHHHH
Confidence 777644 34444444
No 93
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.41 E-value=0.51 Score=49.18 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=57.5
Q ss_pred CCCChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccc
Q 008754 223 GLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL 302 (554)
Q Consensus 223 ~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~ 302 (554)
+..-..+++++.||+.|..+..+...+.|+..++..+...++++..+.+..+ ...+.++.+++.+-+...
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~----------y~~~v~~~~l~s~~ia~~ 322 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLS----------YKTWVIVFTLFSFIVANL 322 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHHHHh
Confidence 4455678899999999999999999999999999999999999999976321 334444444444444333
Q ss_pred cCCchhhHhH
Q 008754 303 RDLTVLSYIS 312 (554)
Q Consensus 303 ~~l~~l~~~s 312 (554)
+++.+..++
T Consensus 323 -Gl~~Ii~~~ 331 (378)
T TIGR00796 323 -GLTQIISIS 331 (378)
T ss_pred -CHHHHHHHH
Confidence 555444443
No 94
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.08 E-value=9.4 Score=40.45 Aligned_cols=286 Identities=17% Similarity=0.144 Sum_probs=132.1
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcH--H-HHHHHHHHHHHHHHHHHHHHHhhhhCCC---CCChHHHHHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGW--F-GLLILVAFGVLSFYTGILLRRCLDSEPG---LETYPDIGQAA 234 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~--~-g~ill~~~~~ls~~t~~~L~~~~~~~~~---~~~y~~l~~~~ 234 (554)
+|.=|+++-+..=+...++++..-+..+.-+.|+ - +++.+.+ | |+...+-......+| ..+++-..+..
T Consensus 53 ~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~v-G----~~~~~~f~~lns~~G~~yhIsFpv~sR~s 127 (572)
T KOG2466|consen 53 RRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWV-G----YLFTAIFLVLNSRPGSDYHISFPVLSRSS 127 (572)
T ss_pred cccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHH-H----HHHHHHHHHHccCCCcccccceeeeeeee
Confidence 6778999988888888888877777766667773 3 4443322 1 111111112223444 23555566677
Q ss_pred hchhhH---HHHHHHHHHHHhHHHHHHHHHHHhhh----hhhcc---ccccCCCccccchh-HHHHHHHHHHHhhhcccc
Q 008754 235 FGTAGR---IAVSVILYAELYACCIEYIILESDNL----SSLFP---NAHLSFGGFYLNSH-HLFALMTTLAVLPTCWLR 303 (554)
Q Consensus 235 ~G~~g~---~~~~i~~~~~~~g~~~~y~i~~~~~l----~~l~~---~~~~~~~~~~~~~~-~~~~iv~~li~~pl~~~~ 303 (554)
||-++. .+..++..+.-+|..+ -+.++.+ ..+++ +.+...+....... ....++.-++.+|..++|
T Consensus 128 FGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~ 204 (572)
T KOG2466|consen 128 FGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFP 204 (572)
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeecc
Confidence 776553 3333333333332211 1112221 22222 22212221111222 233344456677777774
Q ss_pred --CCchhhHhHHHHHHHHHHHHHHHHhhhcc-cccc--cCCCCCccccCchhHHHHHHHHhhccc----cchhhHHhhcc
Q 008754 304 --DLTVLSYISAGGVIASILVVLCLFWVGLV-DQVN--IHSKGTPLNLATLPVAIGLYGYCYSGH----AVFPNIYTSMA 374 (554)
Q Consensus 304 --~l~~l~~~s~~~~~~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~a~~~~~faf~g~----~~i~~i~~emk 374 (554)
.++++-..+........+ ..++|.... ++.+ .+...+.......-..+-.++.++.+. -|.|...+--|
T Consensus 205 p~~ir~lf~~ka~~t~fA~~--g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~k 282 (572)
T KOG2466|consen 205 PYKIRHLFTWKAVLTPFAAF--GFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFAK 282 (572)
T ss_pred HHHhhhHHHHHHhhhHHHHH--HHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhcC
Confidence 344444444333222222 222232111 1111 111122222222222333455555544 56777788888
Q ss_pred CCCCchh----HHHHHHHHHHHHHHHHHHHHHHHhcCCchhh--hhcC-----CCchhHH--HHHHHHHHHHhhhhhhcc
Q 008754 375 QPNQFPK----VLITCFLICTAMYAGVAYMGYTMFGESTLSQ--FTLN-----MPQDLVA--TKIAVWTTVVNPFTKYAL 441 (554)
Q Consensus 375 ~p~~~~~----~~~~s~~~~~~lY~~vg~~gy~~fG~~~~~~--i~~n-----~p~~~~~--~~i~~~~~~i~~~~s~pl 441 (554)
+|..... ++.+.+.+..++=++++..++..||...-++ ++.+ +..+... ..+...+.+-++-+...-
T Consensus 283 sp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~laql~~NISa 362 (572)
T KOG2466|consen 283 SPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFALAQLGTNISA 362 (572)
T ss_pred CCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHHHHHhcchhc
Confidence 8876433 3445555555555566777889999874443 3333 3333221 122333333333334444
Q ss_pred hhhhHHHHHHhhcCC
Q 008754 442 TISPVAMSLEELIPS 456 (554)
Q Consensus 442 ~~~p~~~~l~~~l~~ 456 (554)
.-.+.-.-+..++|+
T Consensus 363 n~vaagnDl~~L~Pk 377 (572)
T KOG2466|consen 363 NSVAAGNDLSALLPK 377 (572)
T ss_pred cccccchhhHhhCcc
Confidence 455666666777776
No 95
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.41 E-value=0.57 Score=49.41 Aligned_cols=77 Identities=25% Similarity=0.400 Sum_probs=58.2
Q ss_pred CChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccC
Q 008754 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRD 304 (554)
Q Consensus 225 ~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~ 304 (554)
.-...++++.||+.|..+..+...+.|+-.++......+|+++++++... ...+.++++++.+.++.+ .
T Consensus 261 ~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kis----------Y~~~v~i~~i~S~~ian~-G 329 (427)
T PF05525_consen 261 ELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKIS----------YKVWVIIFTIFSFIIANL-G 329 (427)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------hHHHHHHHHHHHHHHHHh-C
Confidence 34556689999999999999999999999999999999999999997332 445666666666655544 4
Q ss_pred CchhhHhH
Q 008754 305 LTVLSYIS 312 (554)
Q Consensus 305 l~~l~~~s 312 (554)
++.+-.++
T Consensus 330 l~~Ii~~s 337 (427)
T PF05525_consen 330 LDQIIKIS 337 (427)
T ss_pred HHHHHHHH
Confidence 44444433
No 96
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=93.27 E-value=13 Score=39.32 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=43.1
Q ss_pred HHhhcCCCCCCcchhhhHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhhHHHHhhhhHHHH
Q 008754 450 LEELIPSNHLKSHIYAICIRTALVISTLLVGLAIP--FFGLVMSLIGSLLTMLVTLILPCLCFL 511 (554)
Q Consensus 450 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vA~~vp--~~~~vi~l~Gs~~~~~~~~ilP~l~~l 511 (554)
+|+++.-+.++ +.++...|.+.+++++++++... ++..+.++.-.+-+..+-|.+-+++++
T Consensus 345 meGFLn~~l~~-W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~f 407 (503)
T KOG1291|consen 345 MEGFLNLKLPP-WLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTF 407 (503)
T ss_pred ecccccccchH-HHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhh
Confidence 45666655444 78888999999999999999874 677888877766666555544333433
No 97
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=92.29 E-value=18 Score=38.47 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHhhhhhhhchhHHHH-Hhhc--HH-HHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCChHHHHHHHh
Q 008754 165 SYAQALLNGMNVLCGVGILSTPYAA-KEGG--WF-GLLILVAFGVLS-FYTGILLRRCLDSEPGLETYPDIGQAAF 235 (554)
Q Consensus 165 s~~~a~~~li~~iiG~GiLslP~a~-~~~G--~~-g~ill~~~~~ls-~~t~~~L~~~~~~~~~~~~y~~l~~~~~ 235 (554)
.....-+.+..-..|+|=|-.|-.. +++| |. +.+.+++.++.- ..+...+. +.+ .++.+++++.-
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava----~~~--g~~~~l~~rv~ 78 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA----KVG--GGVDSLSTPIG 78 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh----hcC--CCHHHHhhhcc
Confidence 4566778899999999999999777 5777 44 666555544322 22222221 222 37888877743
No 98
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=92.13 E-value=1.8 Score=44.86 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=59.8
Q ss_pred CCCChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccc
Q 008754 223 GLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWL 302 (554)
Q Consensus 223 ~~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~ 302 (554)
|..-..+..++.||+.|.++..+++.+.|.-.++..+...+|++++++|... +..++++..++.+....+
T Consensus 261 G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~S----------Y~~~v~if~i~sflvan~ 330 (431)
T COG1114 261 GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLS----------YKTWVIIFTLISFLVANL 330 (431)
T ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHHHh
Confidence 4455677799999999999999999999999999999999999999998432 445666666655555433
Q ss_pred cCCchhhHhH
Q 008754 303 RDLTVLSYIS 312 (554)
Q Consensus 303 ~~l~~l~~~s 312 (554)
.+..+..+|
T Consensus 331 -GL~~Ii~is 339 (431)
T COG1114 331 -GLEQIIKIS 339 (431)
T ss_pred -hHHHHHHHH
Confidence 444444443
No 99
>PLN00151 potassium transporter; Provisional
Probab=91.53 E-value=27 Score=39.70 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=12.4
Q ss_pred HHHHHHHHhhccccchhhHHhhccC
Q 008754 351 VAIGLYGYCYSGHAVFPNIYTSMAQ 375 (554)
Q Consensus 351 ~a~~~~~faf~g~~~i~~i~~emk~ 375 (554)
.++|-++-|..|-+. ++.+|-+
T Consensus 348 ~~LGgVvLciTGaEA---LfADLGH 369 (852)
T PLN00151 348 SALGGCVLCATGSEA---MFADLGY 369 (852)
T ss_pred EEecceeeeeccchh---hhcccCC
Confidence 345556666666653 4556655
No 100
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=90.66 E-value=1.9 Score=47.07 Aligned_cols=228 Identities=11% Similarity=0.035 Sum_probs=111.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhh---hhCCCCCChHHHHHHHh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCL---DSEPGLETYPDIGQAAF 235 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~---~~~~~~~~y~~l~~~~~ 235 (554)
.|+..++-..+.++.+.+|++ ++++|.-..+.|.. .... +.......++.... ..+.+..+-.|..++-|
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~-----~~~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~Rf 118 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFE-----WNALLSVLLLGWIFIPVFYRLGVTTMYEYLEKRF 118 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHH-----HHHHHHHHhhheEEEEEEEecCeeehhHHHHHHh
Confidence 778888888888888888887 88999766666643 1111 11111111221111 12345556667788888
Q ss_pred chhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHH
Q 008754 236 GTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGG 315 (554)
Q Consensus 236 G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~ 315 (554)
|+..|.+..+.+.+..+.....++-.-+-.+++.... .. + ...++..+++......-.++..-|+=.+-
T Consensus 119 ~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------~~--~-l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q 187 (585)
T KOG2349|consen 119 GGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------NL--Y-LIVVILGLICVFYTALGGLKAVIWTDVVQ 187 (585)
T ss_pred cccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------Cc--e-eehHHHHHHHHHHHHhcCeeEEEEhhHHH
Confidence 8888887777776655544444433333344444321 11 1 11222223333333344566555555555
Q ss_pred HHHHHHHHHHHHhhhccccc-------------------ccCCCCCc--cccCchhHHHHHHHHhhccccchhhHHhhcc
Q 008754 316 VIASILVVLCLFWVGLVDQV-------------------NIHSKGTP--LNLATLPVAIGLYGYCYSGHAVFPNIYTSMA 374 (554)
Q Consensus 316 ~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~~--~~~~~~~~a~~~~~faf~g~~~i~~i~~emk 374 (554)
.+..+.-++.+...+..+.. ++..++.. .-|+-+.........-|+.+.+...=+-.+|
T Consensus 188 ~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~ 267 (585)
T KOG2349|consen 188 TVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLP 267 (585)
T ss_pred HHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccc
Confidence 44444444444443322110 01111211 1133222223333444555555544444445
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008754 375 QPNQFPKVLITCFLICTAMYAGVAYMGYTM 404 (554)
Q Consensus 375 ~p~~~~~~~~~s~~~~~~lY~~vg~~gy~~ 404 (554)
+-++.++++.......++++.+..+.|..+
T Consensus 268 slk~ak~~~~~~~~~~~l~~~~~~~~G~i~ 297 (585)
T KOG2349|consen 268 SLKHAKPSLLLFGYGVLLIMFIMVFVGMII 297 (585)
T ss_pred cHHHhhhhhhhhhhHHHHHHHhhcccceeE
Confidence 545677766666655555555544444443
No 101
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=89.02 E-value=37 Score=36.71 Aligned_cols=25 Identities=16% Similarity=-0.076 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILST 185 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLsl 185 (554)
+++-|.++-+..++.+-+|+|++--
T Consensus 72 kPefS~~sW~aMlf~aGig~Givfw 96 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFW 96 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcc
Confidence 5677899999999999999998743
No 102
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.46 E-value=4.4 Score=42.92 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCch
Q 008754 228 PDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTV 307 (554)
Q Consensus 228 ~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~ 307 (554)
..+.++.+|+++..+..+.+.+.|+-.++......+++++++++ . + ...+.++.+++.++++.. .++.
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i--s--------Y~~~v~i~~l~S~~lSn~-G~~~ 335 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L--S--------YRTLVFILGGFSMVVSNL-GLSQ 335 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--c--------HHHHHHHHHHHHHHHHHh-HHHH
Confidence 34578999999999999999999999999999999999999875 1 1 456677777777777644 4443
Q ss_pred hh
Q 008754 308 LS 309 (554)
Q Consensus 308 l~ 309 (554)
+-
T Consensus 336 II 337 (439)
T PRK15433 336 LI 337 (439)
T ss_pred HH
Confidence 33
No 103
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=87.36 E-value=43 Score=35.45 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=84.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHH---HHHHHHHHHHHHHHHHhhhhCCCCCChH----HHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLIL---VAFGVLSFYTGILLRRCLDSEPGLETYP----DIGQ 232 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill---~~~~~ls~~t~~~L~~~~~~~~~~~~y~----~l~~ 232 (554)
++..|.+|+.+..+..-+|+| |-...-|+.-.|.-.+..+ .++|..+-|.-..|..-.+++.+...|. ...+
T Consensus 60 ~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~ 139 (452)
T COG1115 60 KGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIE 139 (452)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHH
Confidence 678899999999999999999 8888888888886444444 3556666677677776654343333342 2355
Q ss_pred HHhc-hhhHHHHHHHHHHHHh-HHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhH
Q 008754 233 AAFG-TAGRIAVSVILYAELY-ACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSY 310 (554)
Q Consensus 233 ~~~G-~~g~~~~~i~~~~~~~-g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~ 310 (554)
+-+| ||...++.+.+.+.+. ..+..-.-.+++.+..-++.. +....++.+++ .-+.....++.+..
T Consensus 140 kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~-----------~~~~gi~la~l-~~~VI~GGi~rIa~ 207 (452)
T COG1115 140 KGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIP-----------PLVTGIVLALL-VALVIFGGIKRIAK 207 (452)
T ss_pred hhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCc-----------HHHHHHHHHHH-HHHHHHcchHHHHH
Confidence 5555 3344444433332222 244555555566665555321 22333333333 33344567777777
Q ss_pred hHHHHH
Q 008754 311 ISAGGV 316 (554)
Q Consensus 311 ~s~~~~ 316 (554)
++..-+
T Consensus 208 v~~~vV 213 (452)
T COG1115 208 VSSKVV 213 (452)
T ss_pred HHHHHH
Confidence 765443
No 104
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=85.61 E-value=13 Score=40.02 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccC
Q 008754 224 LETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLS 276 (554)
Q Consensus 224 ~~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~ 276 (554)
..-..++-..+.||++...+..+.++..+.++++-++..+..+..+-++...+
T Consensus 324 g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP 376 (550)
T KOG1289|consen 324 GQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLP 376 (550)
T ss_pred CChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCC
Confidence 35677888999999999888888888999999999999998888777654433
No 105
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=85.07 E-value=0.57 Score=48.39 Aligned_cols=6 Identities=50% Similarity=0.916 Sum_probs=2.9
Q ss_pred CCCCCC
Q 008754 113 KPLLPT 118 (554)
Q Consensus 113 ~p~l~~ 118 (554)
+|-|++
T Consensus 186 tP~LPD 191 (458)
T PF10446_consen 186 TPELPD 191 (458)
T ss_pred CCCCCC
Confidence 455544
No 106
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=80.59 E-value=75 Score=32.87 Aligned_cols=110 Identities=16% Similarity=0.005 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhh--cHH-HHHHHHHHHHHHHH-HHHHHHHhhhhCCCCCChHHHHHHH-
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEG--GWF-GLLILVAFGVLSFY-TGILLRRCLDSEPGLETYPDIGQAA- 234 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~--G~~-g~ill~~~~~ls~~-t~~~L~~~~~~~~~~~~y~~l~~~~- 234 (554)
.|+.+-.-..+....+-+++. .++=|.+..+. ||+ -..+-+-...+++- -+.-+.+.. |+.+..+..|+-++-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~a-r~~nAltI~D~l~~RY 116 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILA-REYNALTINDLLFARY 116 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHhCCeeHHHHHHHHh
Confidence 567777777777777777764 56667655444 453 11111222222211 122223333 556667888887664
Q ss_pred hchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhcc
Q 008754 235 FGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFP 271 (554)
Q Consensus 235 ~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~ 271 (554)
=++.-.++.++.+.+...+.+++-.+..+..++....
T Consensus 117 ~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g 153 (473)
T COG4145 117 QSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG 153 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC
Confidence 3566677788888888888999999999998887764
No 107
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=74.00 E-value=1.6e+02 Score=33.10 Aligned_cols=67 Identities=28% Similarity=0.459 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHhhhhhh-hchhHHHH-HhhcH---H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHH
Q 008754 163 QSSYAQALLNGMNVLCGVG-ILSTPYAA-KEGGW---F-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDI 230 (554)
Q Consensus 163 ~~s~~~a~~~li~~iiG~G-iLslP~a~-~~~G~---~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l 230 (554)
-.+..+-++..++..+|-| +.=.|+.. +++|- + -+++++++|+=..+--..+++-. +.+....+..+
T Consensus 37 w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~-~~g~v~~wrri 109 (629)
T KOG3660|consen 37 WKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFT-SQGPVSVWRRI 109 (629)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhh-cCChHHHHHHh
Confidence 3488999999999999999 77899765 56662 3 45555566666666666666655 44443444333
No 108
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=73.99 E-value=1.8 Score=49.74 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHHhhhhhhh
Q 008754 162 RQSSYAQALLNGMNVLCGVGI 182 (554)
Q Consensus 162 ~~~s~~~a~~~li~~iiG~Gi 182 (554)
+..|...+.....+..-|+|-
T Consensus 1941 ~s~Sqgaa~a~AAgeasgagS 1961 (3015)
T KOG0943|consen 1941 GSISQGAAAAAAAGEASGAGS 1961 (3015)
T ss_pred CccchHHHHHHHhhcccCCCc
Confidence 344555555555555556653
No 109
>PHA02664 hypothetical protein; Provisional
Probab=73.02 E-value=2.8 Score=41.32 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=4.3
Q ss_pred CCCcceeec
Q 008754 5 VSDHSFYIE 13 (554)
Q Consensus 5 ~~~~~~~~~ 13 (554)
.-|+.+..|
T Consensus 424 ~adqdve~~ 432 (534)
T PHA02664 424 PADQDVEAE 432 (534)
T ss_pred ccccccccc
Confidence 345555544
No 110
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.17 E-value=3 Score=42.42 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=4.9
Q ss_pred CCCHHHHHHH
Q 008754 163 QSSYAQALLN 172 (554)
Q Consensus 163 ~~s~~~a~~~ 172 (554)
.++..+++++
T Consensus 469 ~~t~~~~i~h 478 (514)
T KOG3130|consen 469 SLTPPPAIAH 478 (514)
T ss_pred CCCCchhhcC
Confidence 4455555444
No 111
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=69.06 E-value=96 Score=28.61 Aligned_cols=116 Identities=10% Similarity=0.029 Sum_probs=59.6
Q ss_pred HHHHhhh-cccccccCCCCCccccCchhHHHHHHHHhhccccchhhHHhhcc---CCCCchhHHHHHHHHHHHHHHHHHH
Q 008754 324 LCLFWVG-LVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMA---QPNQFPKVLITCFLICTAMYAGVAY 399 (554)
Q Consensus 324 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk---~p~~~~~~~~~s~~~~~~lY~~vg~ 399 (554)
+..+|.. ..++..++.+...+||-.+...+| |.|..-+.+ -+++-.+ .+++.+|.+-..+-...++..++|+
T Consensus 14 lv~~W~~~~rgG~~w~~~~~~Fn~HP~lMv~G---fi~L~geAi-L~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl 89 (179)
T cd08762 14 LVVHWNQMWRGGFAWDGSSKNFNWHPVLMVTG---MVVLYGNAA-LVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGL 89 (179)
T ss_pred HHHHHHHHcCCccCCCCCCCceeehHHHHHHH---HHHHHHHHH-HhhcccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3334433 234445544344566554444333 443322222 2333222 2445678888888888888889998
Q ss_pred HHHHHhcCCchhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhh
Q 008754 400 MGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISP 445 (554)
Q Consensus 400 ~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p 445 (554)
.....|-+.. .+...+.-..+.......+..++-+..+...+.|
T Consensus 90 ~avf~~hn~~--~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 90 CAVFNFHNVH--HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred HHHHHhcccc--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777665542 2322222234555555555555555444444444
No 112
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=66.22 E-value=1.7e+02 Score=30.94 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=117.1
Q ss_pred cccCCchhhHhHHHHHHHHHHHHHHHHhh-----hcccccccCCCCCccccCchhHHHHHHHHhhccccchhhHH-hhcc
Q 008754 301 WLRDLTVLSYISAGGVIASILVVLCLFWV-----GLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIY-TSMA 374 (554)
Q Consensus 301 ~~~~l~~l~~~s~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~-~emk 374 (554)
-+-+++..+.++..+++..+.+++..... .-......+......-...++..+-.+..-..++....+.. ++.|
T Consensus 147 ~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~ 226 (411)
T KOG1305|consen 147 NLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVK 226 (411)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHH
Confidence 45578888888877777666655554333 11111111111001112334444444555556666666655 3444
Q ss_pred CCCCchh-----HHHHHHHHHHHHHHHHHHHHH--HHh-cCCchhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhH
Q 008754 375 QPNQFPK-----VLITCFLICTAMYAGVAYMGY--TMF-GESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPV 446 (554)
Q Consensus 375 ~p~~~~~-----~~~~s~~~~~~lY~~vg~~gy--~~f-G~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~ 446 (554)
+=++..+ +..+-+.+...-|+.+|-..- ... -++.....+.++|....-..++...+...++..||+... +
T Consensus 227 ~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~-l 305 (411)
T KOG1305|consen 227 KIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN-L 305 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH-H
Confidence 4444322 233333344444444432221 111 123334455667877777778888888899999999988 5
Q ss_pred HHHHHhhcC----CCCCCcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHH--HHhcCccch
Q 008754 447 AMSLEELIP----SNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFL--SILRGKATR 520 (554)
Q Consensus 447 ~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l--~~~~~~~~~ 520 (554)
+..+....+ .++.+....-..+ .+......+.--.+..+-.+++.+++.+..++.-.+=-+.-. +.+.+...+
T Consensus 306 ~~~~~~~~~~~~~~s~~r~~~itl~l-l~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~~~~~~~~~ 384 (411)
T KOG1305|consen 306 DELLFPYQPGLTSFSGKRHFVITLLL-LIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKKKSREPLGAL 384 (411)
T ss_pred HHHhcccCCCCCCccceehhHHHHHH-HHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeeccccccchHHH
Confidence 555555444 4444433322222 222222222222333333333333333222221111111111 333344556
Q ss_pred HHHHHHHHHHHHHHHHhHHhHH
Q 008754 521 LQVALCVIIIVAGVVSSAIGSY 542 (554)
Q Consensus 521 ~~~~~~~~ii~~g~~~~v~gty 542 (554)
..+++...+.++|+...+.-..
T Consensus 385 ~~~~~~~~~~i~~~~~~i~~~~ 406 (411)
T KOG1305|consen 385 IFLILGVLLSIIGVAVMIYDLL 406 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888887766544
No 113
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=66.21 E-value=11 Score=36.05 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHhHH--HHHHHHHHH
Q 008754 522 QVALCVIIIVAGVVSSAIGSY--SAILKIVES 551 (554)
Q Consensus 522 ~~~~~~~ii~~g~~~~v~gty--~si~~ii~~ 551 (554)
++|+.|+++++|+++.+-|++ ..|+++-+.
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFINYIKVRRMEEK 253 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHhhHHHH
Confidence 567778888888887777775 344444443
No 114
>TIGR00909 2A0306 amino acid transporter.
Probab=64.88 E-value=1.9e+02 Score=30.45 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=38.9
Q ss_pred ChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccc
Q 008754 226 TYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPN 272 (554)
Q Consensus 226 ~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~ 272 (554)
...++.++..|+++..++.+...+..++++.+.+...+..+..+-.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667788889999999999999999999999998888888776543
No 115
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=63.69 E-value=2.4e+02 Score=31.19 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHH-HHhhcH---H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYA-AKEGGW---F-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAA 234 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a-~~~~G~---~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~ 234 (554)
+.-.+..+.....++..++.| +--.||- +++.|+ + -.+.+++.|+=..|-=.-|++-+ |.+....+..++-+.
T Consensus 79 ~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~-r~g~~gvw~ri~P~l 157 (629)
T KOG3659|consen 79 PTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYH-RQGCIGVWRRIAPAL 157 (629)
T ss_pred CcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHh-cccchhHHHHhCHHh
Confidence 445677888889999999998 7788975 567776 3 55666677777777777777776 667666777777665
Q ss_pred hchhhHHHHHHHHHH
Q 008754 235 FGTAGRIAVSVILYA 249 (554)
Q Consensus 235 ~G~~g~~~~~i~~~~ 249 (554)
-| .|.-++-++++.
T Consensus 158 ~G-igy~i~~i~~~~ 171 (629)
T KOG3659|consen 158 KG-IGYAICLIAFFV 171 (629)
T ss_pred cC-CchhhhHHHHHH
Confidence 55 343344444433
No 116
>PRK09950 putative transporter; Provisional
Probab=63.68 E-value=2.3e+02 Score=30.94 Aligned_cols=38 Identities=11% Similarity=-0.056 Sum_probs=24.2
Q ss_pred hCCCCCChHHHHHHHhchh----hHHHHHHHHHHHHhHHHHH
Q 008754 220 SEPGLETYPDIGQAAFGTA----GRIAVSVILYAELYACCIE 257 (554)
Q Consensus 220 ~~~~~~~y~~l~~~~~G~~----g~~~~~i~~~~~~~g~~~~ 257 (554)
|+....+....++-.+|++ .+.+++++.++...+....
T Consensus 162 rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~Gvat 203 (506)
T PRK09950 162 RKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTI 203 (506)
T ss_pred hcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4555567888888888854 3567777666544433333
No 117
>PHA02608 67 prohead core protein; Provisional
Probab=63.43 E-value=2.8 Score=32.30 Aligned_cols=12 Identities=50% Similarity=0.689 Sum_probs=6.9
Q ss_pred cceeecCCchhh
Q 008754 8 HSFYIESDEEED 19 (554)
Q Consensus 8 ~~~~~~~~~~~~ 19 (554)
+++.||.++.+|
T Consensus 41 ~sv~iEGEe~ed 52 (80)
T PHA02608 41 RSVMIEGEEPED 52 (80)
T ss_pred HHHhhcCCCCcc
Confidence 456677665443
No 118
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=61.54 E-value=4.7 Score=45.00 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=10.1
Q ss_pred ccCCCCCCHHHHHHH
Q 008754 158 HPISRQSSYAQALLN 172 (554)
Q Consensus 158 ~~~~~~~s~~~a~~~ 172 (554)
....|+-|++.+..+
T Consensus 306 l~LlRHWSLydSm~~ 320 (622)
T PF02724_consen 306 LMLLRHWSLYDSMYH 320 (622)
T ss_pred eeeeccCcHHHHHhh
Confidence 444678888887654
No 119
>PLN02680 carbon-monoxide oxygenase
Probab=61.33 E-value=1.2e+02 Score=29.18 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=55.2
Q ss_pred ccccCchhHHHHHHHHhhccccchhhHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCchhH
Q 008754 343 PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLV 422 (554)
Q Consensus 343 ~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~~~~s~~~~~~lY~~vg~~gy~~fG~~~~~~i~~n~p~~~~ 422 (554)
.+||-.+...+|.+. ..|.. +. +++..+.+++.+|.+-..+-...++..++|+.....+.++ ..+..-+.-+.+
T Consensus 46 ~Fn~HPlLM~~Gfi~--l~geA-IL-~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSW 119 (232)
T PLN02680 46 IFNVHPVLMVIGLVL--LNGEA-ML-AYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSW 119 (232)
T ss_pred eEechHHHHHHHHHH--HHHHH-Hh-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHH
Confidence 556666555555433 12222 22 2445555566778888888888888888888665555443 233222333455
Q ss_pred HHHHHHHHHHHhhhhhhcchhhh
Q 008754 423 ATKIAVWTTVVNPFTKYALTISP 445 (554)
Q Consensus 423 ~~~i~~~~~~i~~~~s~pl~~~p 445 (554)
...+...+..++.+..+...++|
T Consensus 120 lGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 120 LGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 55566666666655555544455
No 120
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.36 E-value=2e+02 Score=30.54 Aligned_cols=9 Identities=22% Similarity=0.397 Sum_probs=6.3
Q ss_pred HHHhhhhhh
Q 008754 173 GMNVLCGVG 181 (554)
Q Consensus 173 li~~iiG~G 181 (554)
++.+.+|+|
T Consensus 294 Lfsa~lGsG 302 (593)
T KOG1277|consen 294 LFSAVLGSG 302 (593)
T ss_pred HHHHHhccc
Confidence 456677888
No 121
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.15 E-value=6.8 Score=35.75 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=6.1
Q ss_pred CCCCCChhhh
Q 008754 56 YNTSWPQSYR 65 (554)
Q Consensus 56 ~~~~~~~~~~ 65 (554)
.+..|++.+|
T Consensus 174 ~e~~q~~~rr 183 (184)
T KOG4032|consen 174 FEDGQTKVRR 183 (184)
T ss_pred cccccccccc
Confidence 4455776666
No 122
>PRK09928 choline transport protein BetT; Provisional
Probab=59.84 E-value=3e+02 Score=31.12 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhhhcchhhhHHHHHHhhc
Q 008754 425 KIAVWTTVVNPFTKYALTISPVAMSLEELI 454 (554)
Q Consensus 425 ~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l 454 (554)
.++.+.++..+.++..+-..-+...++.++
T Consensus 198 i~av~~tvfGiaTSLGlGv~qi~~GL~~lf 227 (679)
T PRK09928 198 IAAVIGTIFGIATTLGIGVVQLNYGLSVLF 227 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444433444444444
No 123
>PRK09928 choline transport protein BetT; Provisional
Probab=59.74 E-value=3e+02 Score=31.10 Aligned_cols=24 Identities=8% Similarity=-0.064 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILS 184 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLs 184 (554)
+++-|.++-+..++.+-+|+|++-
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhhee
Confidence 456677778888899999999763
No 124
>PRK11281 hypothetical protein; Provisional
Probab=59.68 E-value=2.5e+02 Score=33.88 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008754 379 FPKVLITCFLICTAMYAGVAYMGYTMFGE 407 (554)
Q Consensus 379 ~~~~~~~s~~~~~~lY~~vg~~gy~~fG~ 407 (554)
-++++.+++..+....+++..+||+.+..
T Consensus 542 T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 542 TPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999988899899999977653
No 125
>PRK10263 DNA translocase FtsK; Provisional
Probab=58.08 E-value=3e+02 Score=33.58 Aligned_cols=22 Identities=9% Similarity=0.239 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008754 383 LITCFLICTAMYAGVAYMGYTM 404 (554)
Q Consensus 383 ~~~s~~~~~~lY~~vg~~gy~~ 404 (554)
+...+++++.+|++++++.|..
T Consensus 25 ~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 3344567778888888888865
No 126
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=58.06 E-value=1e+02 Score=33.17 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=58.4
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCC----CccccchhHHHHHHHHHHHhhhcccc
Q 008754 228 PDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSF----GGFYLNSHHLFALMTTLAVLPTCWLR 303 (554)
Q Consensus 228 ~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~----~~~~~~~~~~~~iv~~li~~pl~~~~ 303 (554)
.+.+++.+|.+. +.+-+...+.++|..-+.+-..+..+.....+-+.+. -..+..++....+..+++.+.+.++.
T Consensus 276 v~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~ 354 (479)
T KOG1287|consen 276 VTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIG 354 (479)
T ss_pred HHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHh
Confidence 345889999888 8888888888888777766666666665544333221 11111123444455555555556665
Q ss_pred CCch-hhHhHHHHHHHHHHHHHHHHhhhc
Q 008754 304 DLTV-LSYISAGGVIASILVVLCLFWVGL 331 (554)
Q Consensus 304 ~l~~-l~~~s~~~~~~~i~~~~~~~~~~~ 331 (554)
|+.. ..+++...-+...+.++..++.-.
T Consensus 355 d~~~LIny~sf~~~l~~~l~~~gll~lR~ 383 (479)
T KOG1287|consen 355 DFDQLINYVSFAYWLFRGLSMAGLLWLRW 383 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 344554444445555555555433
No 127
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=56.25 E-value=6.3 Score=44.79 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhhhhccc
Q 008754 253 ACCIEYIILESDNLSSLFPN 272 (554)
Q Consensus 253 g~~~~y~i~~~~~l~~l~~~ 272 (554)
.++.-|++.++|.+...++.
T Consensus 592 scmgq~i~~fgD~l~~eL~~ 611 (1233)
T KOG1824|consen 592 SCMGQIIANFGDFLGNELPR 611 (1233)
T ss_pred HHHHHHHHHHhhhhhhhhHH
Confidence 33445667777887766654
No 128
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=54.61 E-value=1.3e+02 Score=30.80 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCC
Q 008754 379 FPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNM 417 (554)
Q Consensus 379 ~~~~~~~s~~~~~~lY~~vg~~gy~~fG~~~~~~i~~n~ 417 (554)
-++++..++..+...-+++..+||.........++...+
T Consensus 46 T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l 84 (340)
T PF12794_consen 46 TPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVAL 84 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 458999999999999999999999887655555544433
No 129
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=53.43 E-value=3e+02 Score=29.12 Aligned_cols=165 Identities=15% Similarity=0.125 Sum_probs=83.1
Q ss_pred HHHHHHHHhhccccchhhHHhhccCCCCchhH-HHHHHHHHHHHHHH-HHHHHHHHhcCCchhhhhcCCCchhHHHHHHH
Q 008754 351 VAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKV-LITCFLICTAMYAG-VAYMGYTMFGESTLSQFTLNMPQDLVATKIAV 428 (554)
Q Consensus 351 ~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~-~~~s~~~~~~lY~~-vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~ 428 (554)
..+..+-.+..+..--+++-+=.+.-++-.+. +..+..+...++++ ....++..|+.--......-+....-...+..
T Consensus 194 ~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~ 273 (415)
T COG0814 194 YLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLS 273 (415)
T ss_pred HHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHH
Confidence 34444444444444333333323333445664 55555555554443 45556666633311111111111111112222
Q ss_pred HHHHH--hhhhhhcchhhhHHHHHHhhcCCC----------CCC-cchh-hhHHHHHHHHHHHHHHhhcc-hhHHHHHHH
Q 008754 429 WTTVV--NPFTKYALTISPVAMSLEELIPSN----------HLK-SHIY-AICIRTALVISTLLVGLAIP-FFGLVMSLI 493 (554)
Q Consensus 429 ~~~~i--~~~~s~pl~~~p~~~~l~~~l~~~----------~~~-~~~~-~~~~~~~~~~~~~~vA~~vp-~~~~vi~l~ 493 (554)
..... ....+++..+++.......++... .++ +... |..........+.+.++..| -+......+
T Consensus 274 ~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 353 (415)
T COG0814 274 ALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYA 353 (415)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhH
Confidence 22221 223567777777765444333221 111 0111 33445555566667777766 477888888
Q ss_pred HHHHhhHHHHhhhhHHHHHHhc
Q 008754 494 GSLLTMLVTLILPCLCFLSILR 515 (554)
Q Consensus 494 Gs~~~~~~~~ilP~l~~l~~~~ 515 (554)
|+++.++.+-++|.+++++-++
T Consensus 354 ~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 354 GGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9898999999999999998754
No 130
>PLN03223 Polycystin cation channel protein; Provisional
Probab=53.32 E-value=4.9e+02 Score=31.91 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 008754 241 IAVSVILYAELYACCIEYIILES 263 (554)
Q Consensus 241 ~~~~i~~~~~~~g~~~~y~i~~~ 263 (554)
-.+.++.++..+++++.|++...
T Consensus 1216 NwLEIl~IlLS~AAIvLYFvf~~ 1238 (1634)
T PLN03223 1216 NYVDFASIGLHLATIMMWFVFSW 1238 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666665543
No 131
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=50.18 E-value=3.5e+02 Score=28.99 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=34.9
Q ss_pred CChHHHHHHHhch-hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccc
Q 008754 225 ETYPDIGQAAFGT-AGRIAVSVILYAELYACCIEYIILESDNLSSLFPN 272 (554)
Q Consensus 225 ~~y~~l~~~~~G~-~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~ 272 (554)
..+.++.+.++|. ++..++.+...+..+++..+++...++.+..+-.+
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888887 66666777777777777788888888877766543
No 132
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=47.41 E-value=13 Score=41.49 Aligned_cols=9 Identities=11% Similarity=-0.097 Sum_probs=3.6
Q ss_pred chhHHHHHH
Q 008754 379 FPKVLITCF 387 (554)
Q Consensus 379 ~~~~~~~s~ 387 (554)
+.+.+-.|.
T Consensus 467 l~~gi~~Ak 475 (622)
T PF02724_consen 467 LKKGIELAK 475 (622)
T ss_pred HHHHHHHHH
Confidence 334444433
No 133
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=46.66 E-value=8.4 Score=46.47 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=8.0
Q ss_pred cccchhhHHhhccCCC
Q 008754 362 GHAVFPNIYTSMAQPN 377 (554)
Q Consensus 362 g~~~i~~i~~emk~p~ 377 (554)
-..++|-...|=++++
T Consensus 643 niem~p~~lke~~~~k 658 (2849)
T PTZ00415 643 NIEIFPKMLKDEKKKK 658 (2849)
T ss_pred Chhccchhhhhhhhcc
Confidence 3455666555544333
No 134
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=45.31 E-value=16 Score=38.71 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCC
Q 008754 50 QTHPGSYNTSWP 61 (554)
Q Consensus 50 ~~~~~~~~~~~~ 61 (554)
..-++++.-+-+
T Consensus 153 ~~IP~shEi~l~ 164 (641)
T KOG0772|consen 153 KLIPGSHEIQLK 164 (641)
T ss_pred hcCCccceEecc
Confidence 334455444443
No 135
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=44.62 E-value=15 Score=43.11 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=5.4
Q ss_pred HHHHHHhhhh
Q 008754 258 YIILESDNLS 267 (554)
Q Consensus 258 y~i~~~~~l~ 267 (554)
.+.+++|++.
T Consensus 1557 HLsLiADYMT 1566 (1640)
T KOG0262|consen 1557 HLSLIADYMT 1566 (1640)
T ss_pred HHHHHHHHHh
Confidence 3555566553
No 136
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=43.91 E-value=65 Score=30.09 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhHHHHhhhhHHHHHHhcCc----------cchHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 008754 489 VMSLIGSLLTMLVTLILPCLCFLSILRGK----------ATRLQVALCVIIIVAGVVSSAIGSYSAILKIVE 550 (554)
Q Consensus 489 vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~----------~~~~~~~~~~~ii~~g~~~~v~gty~si~~ii~ 550 (554)
-.-+.|++.+.-+..++|+...+..++++ .+|......++..++|++.++.+...+...+.+
T Consensus 46 ~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 46 EVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456677777788899999999887652 345566777888888888888888877777654
No 137
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=43.18 E-value=5.3e+02 Score=29.68 Aligned_cols=10 Identities=30% Similarity=0.179 Sum_probs=4.5
Q ss_pred hhHHHHHhhc
Q 008754 184 STPYAAKEGG 193 (554)
Q Consensus 184 slP~a~~~~G 193 (554)
.+|......|
T Consensus 189 ilp~i~~~~g 198 (742)
T TIGR01299 189 VLPSAEKDLC 198 (742)
T ss_pred HHHHHHHHhC
Confidence 3454444444
No 138
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=41.42 E-value=14 Score=37.09 Aligned_cols=8 Identities=13% Similarity=0.542 Sum_probs=3.4
Q ss_pred CCChhhhh
Q 008754 59 SWPQSYRQ 66 (554)
Q Consensus 59 ~~~~~~~~ 66 (554)
-|==+.++
T Consensus 320 KWKc~LKD 327 (348)
T KOG2652|consen 320 KWKCYLKD 327 (348)
T ss_pred eeeEEeec
Confidence 35444443
No 139
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.23 E-value=15 Score=40.33 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHhhccccchhhH
Q 008754 347 ATLPVAIGLYGYCYSGHAVFPNI 369 (554)
Q Consensus 347 ~~~~~a~~~~~faf~g~~~i~~i 369 (554)
+++..++|.-+=....+.++..+
T Consensus 644 SGLaegLg~~ie~Lva~snl~~l 666 (885)
T KOG2023|consen 644 SGLAEGLGSHIEPLVAQSNLLDL 666 (885)
T ss_pred hHHHHHhhhchHHHhhhccHHHH
Confidence 45555655544444444444443
No 140
>PLN02810 carbon-monoxide oxygenase
Probab=40.52 E-value=3.4e+02 Score=26.11 Aligned_cols=107 Identities=8% Similarity=-0.000 Sum_probs=58.5
Q ss_pred cccccCCC--CCccccCchhHHHHHHHHhhccccchhhHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 008754 333 DQVNIHSK--GTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTL 410 (554)
Q Consensus 333 ~~~~~~~~--~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~~~~~~s~~~~~~lY~~vg~~gy~~fG~~~~ 410 (554)
++..|+.+ ...+||-.+...+ .|.|..-+.+. +++..+.+++.+|.+-..+=...++..++|+.....|-+..
T Consensus 34 gG~aw~~~~~~~~FN~HPvlMv~---Gfi~l~geAIL-~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~- 108 (231)
T PLN02810 34 GGLAWEATNKNLIFNLHPVLMLI---GLIIIGGEAIM-SYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES- 108 (231)
T ss_pred CcccccCCCCCceeeehHHHHHH---HHHHHhhHHHH-HhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 34445432 2355665544443 34444444443 33445555667888888888888888999997777665542
Q ss_pred hhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhh
Q 008754 411 SQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISP 445 (554)
Q Consensus 411 ~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p 445 (554)
.+..-+.-+.+.......+..++-+..+-..++|
T Consensus 109 -~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P 142 (231)
T PLN02810 109 -GIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFP 142 (231)
T ss_pred -CCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2322222234555455555555544444333344
No 141
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=40.28 E-value=1.5e+02 Score=32.14 Aligned_cols=64 Identities=27% Similarity=0.431 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC--CCChHHHHHHHh
Q 008754 163 QSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPG--LETYPDIGQAAF 235 (554)
Q Consensus 163 ~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~--~~~y~~l~~~~~ 235 (554)
.++....++..++. +.|.+- ++=|+ ..+++++++++++|++..+-+|.+..++ -++... .|..+
T Consensus 458 ~~srves~~~~Lk~-------s~pKan-K~LWIsvAliVLLAaLlSfLtg~~fq~~vdaAp~~~GdSw~S-~Qq~l 524 (538)
T PF05781_consen 458 RYSRVESWASYLKT-------SFPKAN-KVLWISVALIVLLAALLSFLTGLFFQRCVDAAPVGTGDSWCS-LQQLL 524 (538)
T ss_pred HHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccchhccCCCCCCccchh-hHhhh
Confidence 34444555555554 455444 44466 7777788888999999777777655443 234444 55544
No 142
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=40.05 E-value=26 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008754 382 VLITCFLICTAMYAGVAYMGYTMFGES 408 (554)
Q Consensus 382 ~~~~s~~~~~~lY~~vg~~gy~~fG~~ 408 (554)
+..+++.+.+++..+.|...|.+||+.
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 445677777788888888889999864
No 143
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=39.57 E-value=25 Score=24.36 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008754 381 KVLITCFLICTAMYAGVAYMGYTMFGES 408 (554)
Q Consensus 381 ~~~~~s~~~~~~lY~~vg~~gy~~fG~~ 408 (554)
.+..+++.+.+++..+.|..-|.+||+-
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4667777788888888888888899965
No 144
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=39.07 E-value=10 Score=37.11 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHhhHHHH
Q 008754 494 GSLLTMLVTL 503 (554)
Q Consensus 494 Gs~~~~~~~~ 503 (554)
|+.++.+++|
T Consensus 133 GAs~WtiLaF 142 (381)
T PF05297_consen 133 GASFWTILAF 142 (381)
T ss_dssp ----------
T ss_pred hhHHHHHHHH
Confidence 4444443333
No 145
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=38.93 E-value=18 Score=27.88 Aligned_cols=6 Identities=50% Similarity=0.684 Sum_probs=2.2
Q ss_pred CCCCCC
Q 008754 28 GGEEDQ 33 (554)
Q Consensus 28 ~~~~~~ 33 (554)
++|||.
T Consensus 69 ddeeds 74 (94)
T PF05756_consen 69 DDEEDS 74 (94)
T ss_pred cccccc
Confidence 333333
No 146
>COG3817 Predicted membrane protein [Function unknown]
Probab=38.30 E-value=3.9e+02 Score=26.11 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHh
Q 008754 521 LQVALCVIIIVAGVVSSAIGSYSAILKIVESL 552 (554)
Q Consensus 521 ~~~~~~~~ii~~g~~~~v~gty~si~~ii~~~ 552 (554)
|..++.-.+..+|.+....|.=-++..++..|
T Consensus 166 wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~ 197 (313)
T COG3817 166 WAAILPQMLAALGAVFASAGVGDVIAHLISEI 197 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44567778888999999999988888887754
No 147
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=37.59 E-value=6.1e+02 Score=30.65 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008754 379 FPKVLITCFLICTAMYAGVAYMGYTMFG 406 (554)
Q Consensus 379 ~~~~~~~s~~~~~~lY~~vg~~gy~~fG 406 (554)
-++++.+++..+.-.-+++.++||..+.
T Consensus 520 T~~al~~t~l~alP~pl~~~~~g~~l~~ 547 (1109)
T PRK10929 520 TLRTVFWSILVASPLPVLWAALGYGLQN 547 (1109)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3578888888888888888899997665
No 148
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=36.15 E-value=3.2e+02 Score=24.41 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=20.0
Q ss_pred hhHHHHHHHH--HHHhhHHHHhhhhHHHHHHhcCccch
Q 008754 485 FFGLVMSLIG--SLLTMLVTLILPCLCFLSILRGKATR 520 (554)
Q Consensus 485 ~~~~vi~l~G--s~~~~~~~~ilP~l~~l~~~~~~~~~ 520 (554)
|.....++++ .+...++..++|+++.++.+-++.++
T Consensus 56 n~~Ea~ells~~~~~~~l~~~vlP~~~l~~~~i~~~~~ 93 (156)
T PF08019_consen 56 NTAEASELLSWKLILWLLLLGVLPALLLWRVRIKKRSW 93 (156)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 3344444443 24455566678888877766544333
No 149
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=35.56 E-value=2.1e+02 Score=31.41 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=17.3
Q ss_pred HhhHHHHhhhhHHHHHHhcCccchHHHH
Q 008754 497 LTMLVTLILPCLCFLSILRGKATRLQVA 524 (554)
Q Consensus 497 ~~~~~~~ilP~l~~l~~~~~~~~~~~~~ 524 (554)
...++..++|+++.++.+-...++.+.+
T Consensus 125 ~~~~~l~~lp~~~~~~~~~~~~~~~~~~ 152 (522)
T PRK09598 125 IYIVVLGVLPGYIIYKIPLKNSSKKAPF 152 (522)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 3556667899999877754333433443
No 150
>PF14256 YwiC: YwiC-like protein
Probab=34.86 E-value=3e+02 Score=23.83 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCccchHH
Q 008754 484 PFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQ 522 (554)
Q Consensus 484 p~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~~~ 522 (554)
|....+.-+++-+++ .....|...++|-+++++++.+
T Consensus 23 ~~w~~~~L~~aw~~~--yl~~~p~~~~~k~r~~~~~~~~ 59 (129)
T PF14256_consen 23 PSWAHLPLLLAWLFG--YLAFYPFLLWLKQRRRRRPRYL 59 (129)
T ss_pred ccHHHHHHHHHHHHH--HHHHHHHHHHHhcccccchhHH
Confidence 455554445555543 3445699999987664333333
No 151
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=34.75 E-value=6.1e+02 Score=27.26 Aligned_cols=35 Identities=6% Similarity=-0.109 Sum_probs=21.8
Q ss_pred hCCCCCChHHHHHHHhchh----hHHHHHHHHHHHHhHH
Q 008754 220 SEPGLETYPDIGQAAFGTA----GRIAVSVILYAELYAC 254 (554)
Q Consensus 220 ~~~~~~~y~~l~~~~~G~~----g~~~~~i~~~~~~~g~ 254 (554)
|+.......+.++-.+|++ .+.+++++.++...+.
T Consensus 115 rk~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G 153 (453)
T TIGR00842 115 RKGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFG 153 (453)
T ss_pred ecCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHH
Confidence 4555567888888888754 3456776655543333
No 152
>CHL00020 psbN photosystem II protein N
Probab=34.69 E-value=25 Score=24.00 Aligned_cols=27 Identities=22% Similarity=0.408 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008754 382 VLITCFLICTAMYAGVAYMGYTMFGES 408 (554)
Q Consensus 382 ~~~~s~~~~~~lY~~vg~~gy~~fG~~ 408 (554)
+..+++.+..++..+.|..-|.+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 556677777788888888888899965
No 153
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=32.43 E-value=15 Score=35.98 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 008754 311 ISAGGVIASILVVLCLFW 328 (554)
Q Consensus 311 ~s~~~~~~~i~~~~~~~~ 328 (554)
+.-+|++|++++++++++
T Consensus 77 LCPLGlLCiilimi~lLv 94 (381)
T PF05297_consen 77 LCPLGLLCIILIMIVLLV 94 (381)
T ss_dssp ------------------
T ss_pred cCcchHHHHHHHHHHHHH
Confidence 345666666666555444
No 154
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=30.81 E-value=28 Score=38.49 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=8.5
Q ss_pred CChHHHHHHHhc
Q 008754 225 ETYPDIGQAAFG 236 (554)
Q Consensus 225 ~~y~~l~~~~~G 236 (554)
..|.+.+.+.+|
T Consensus 333 ~~~d~Fa~RLWG 344 (971)
T KOG0468|consen 333 IDVDDFAKRLWG 344 (971)
T ss_pred cchhhhhhhhhc
Confidence 677777777775
No 155
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.93 E-value=32 Score=35.32 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.9
Q ss_pred CCCCCc
Q 008754 74 VPSPSL 79 (554)
Q Consensus 74 ~~~p~~ 79 (554)
-++|++
T Consensus 356 q~lp~i 361 (514)
T KOG3130|consen 356 QELPTI 361 (514)
T ss_pred ccCCcc
Confidence 345554
No 156
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=29.74 E-value=35 Score=32.89 Aligned_cols=6 Identities=50% Similarity=0.678 Sum_probs=2.3
Q ss_pred CCchhh
Q 008754 14 SDEEED 19 (554)
Q Consensus 14 ~~~~~~ 19 (554)
.||+|+
T Consensus 46 ~de~d~ 51 (270)
T KOG4363|consen 46 GDEEDY 51 (270)
T ss_pred chhhhc
Confidence 334333
No 157
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=29.38 E-value=74 Score=34.05 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=84.6
Q ss_pred HhchhhHHHHHHHHHHHHhHHHHHH-HHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCc-hhhHh
Q 008754 234 AFGTAGRIAVSVILYAELYACCIEY-IILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLT-VLSYI 311 (554)
Q Consensus 234 ~~G~~g~~~~~i~~~~~~~g~~~~y-~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~-~l~~~ 311 (554)
+.+|.|.+++.+.+.+.+.+..++- .+..|.-+..++|..- ...|-.++..+.++++.|=.++++=+ .+..+
T Consensus 338 ~G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyi------nIrRG~~~~a~ia~a~~PWnll~SSs~F~t~L 411 (572)
T KOG2466|consen 338 AGARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYI------NIRRGALICAIIAWAICPWNLLSSSSKFLTAL 411 (572)
T ss_pred cccchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceE------EecccHHHHHHHHHHhCchHHhccccHHHHHH
Confidence 3345788888888888888777654 4555666777777542 11223455555578888877776443 34444
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-cc---c-c-cCCCC-------CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC
Q 008754 312 SAGGVIASILVVLCLFWVGLV-DQ---V-N-IHSKG-------TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ 378 (554)
Q Consensus 312 s~~~~~~~i~~~~~~~~~~~~-~~---~-~-~~~~~-------~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~ 378 (554)
+..+++..-+..+.+.=..+. ++ . + +..++ ...||. .++.|-.++-+++|-+..|..+..+
T Consensus 412 ssysvfLspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~~G~NwR------A~vA~vcG~~P~lpG~a~~V~~~~~ 485 (572)
T KOG2466|consen 412 SSYSVFLSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYFKKGINWR------AFVAYVCGMAPNLPGFAGSVGADIK 485 (572)
T ss_pred HHHHHHHhhccceEeehhheeecceeeeeeeeecCCCceeeeecCccHH------HHHHHHhccccCCcchhhhcCcccc
Confidence 444443332222211101111 10 0 0 11111 112222 2345666777888988888764332
Q ss_pred c--------hhHHHHHHHHHHHHHHHHHH
Q 008754 379 F--------PKVLITCFLICTAMYAGVAY 399 (554)
Q Consensus 379 ~--------~~~~~~s~~~~~~lY~~vg~ 399 (554)
. -.....++.+.+++|.++-.
T Consensus 486 v~~G~~~~yy~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 486 VPDGAVKLYYLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred cccceEEEEechHHHHHHHHHHHHHHHHh
Confidence 2 34778888888888886543
No 158
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=29.20 E-value=8.1e+02 Score=27.01 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=28.5
Q ss_pred ChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhcc
Q 008754 226 TYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFP 271 (554)
Q Consensus 226 ~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~ 271 (554)
.+.+..+...++++..++.+...+..+++..+.+...+..+..+-.
T Consensus 300 p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amar 345 (557)
T TIGR00906 300 PFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMAR 345 (557)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444456677777766666777777777777777665543
No 159
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.81 E-value=1.4e+02 Score=24.14 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHH
Q 008754 468 IRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLS 512 (554)
Q Consensus 468 ~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~ 512 (554)
+-++..++.++..+....+...+-.+|+-|......++|+.=+++
T Consensus 31 ilti~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~LPpwP~y~ 75 (101)
T KOG4112|consen 31 ILTIGAIVGFIYGFAQQQLSVTVYIVGAGFVFTLLITLPPWPWYR 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhh
Confidence 334444556666777778888888888888888888899988774
No 160
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=28.42 E-value=8.4e+02 Score=26.97 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=13.2
Q ss_pred HhhHHHHhhhhHHHHHHhcC
Q 008754 497 LTMLVTLILPCLCFLSILRG 516 (554)
Q Consensus 497 ~~~~~~~ilP~l~~l~~~~~ 516 (554)
.+..+..++|+++.+..+.+
T Consensus 121 ~~l~~~g~l~~ll~~~~~~r 140 (555)
T COG2194 121 LWLVLVGLLPALLIVLVIIR 140 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34456677888888775443
No 161
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=27.94 E-value=6.2e+02 Score=26.98 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHhhHHHHhhhh
Q 008754 466 ICIRTALVISTLLVGLAIPF-----FGLVMSLIGSLLTMLVTLILPC 507 (554)
Q Consensus 466 ~~~~~~~~~~~~~vA~~vp~-----~~~vi~l~Gs~~~~~~~~ilP~ 507 (554)
..+.+++++...+.+.++|+ +..-++.+|++...++..|+-.
T Consensus 112 W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~FiliQlIlLv 158 (429)
T PF03348_consen 112 WFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFILIQLILLV 158 (429)
T ss_pred HHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888999997 3344566666665555555433
No 162
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=27.53 E-value=4.5e+02 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=21.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008754 377 NQFPKVLITCFLICTAMYAGVAYMGYT 403 (554)
Q Consensus 377 ~~~~~~~~~s~~~~~~lY~~vg~~gy~ 403 (554)
+|+++-+.........+|+.+++..|.
T Consensus 1 ~r~~~~i~~~~l~~~~~fl~~al~sy~ 27 (171)
T PF13491_consen 1 ERRKREILGIALLLLALFLLLALISYS 27 (171)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356666777777888899999998884
No 163
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=26.93 E-value=51 Score=35.30 Aligned_cols=12 Identities=33% Similarity=0.246 Sum_probs=4.7
Q ss_pred CCCCCHHHHHHH
Q 008754 161 SRQSSYAQALLN 172 (554)
Q Consensus 161 ~~~~s~~~a~~~ 172 (554)
+|-.|.+--+++
T Consensus 537 kra~sa~m~w~~ 548 (615)
T KOG0526|consen 537 KRATSAYMLWLN 548 (615)
T ss_pred ccchhHHHHHHH
Confidence 344444433333
No 164
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.71 E-value=48 Score=30.06 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.2
Q ss_pred CCCCCC
Q 008754 35 ENDGND 40 (554)
Q Consensus 35 ~~~~~~ 40 (554)
.|.|+|
T Consensus 197 ~d~d~D 202 (227)
T KOG3241|consen 197 SDPDSD 202 (227)
T ss_pred cCCccc
Confidence 333333
No 165
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=26.59 E-value=5.6e+02 Score=24.29 Aligned_cols=36 Identities=3% Similarity=-0.100 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCC
Q 008754 423 ATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNH 458 (554)
Q Consensus 423 ~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~ 458 (554)
...-......+..+.++|..++-.-.-+..-+.+++
T Consensus 57 f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~E 92 (215)
T TIGR00945 57 FFTYIKLSLIVGIILSSPVILYQIWAFILPGLYEHE 92 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 333444455666777888887655444444444433
No 166
>PRK12438 hypothetical protein; Provisional
Probab=26.24 E-value=1.1e+03 Score=28.00 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHhhcchhHHHH
Q 008754 465 AICIRTALVISTLLVGLAIPFFGLVM 490 (554)
Q Consensus 465 ~~~~~~~~~~~~~~vA~~vp~~~~vi 490 (554)
++.+...++++...+++...-++.+.
T Consensus 212 hL~vl~~~~~ll~A~~ywLdRy~LL~ 237 (991)
T PRK12438 212 QLAVFAGAFVLLKAVAYWLDRYELLS 237 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 33333333333334444444444433
No 167
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=25.78 E-value=1.9e+02 Score=25.96 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=35.7
Q ss_pred HHHHHHhhHHHHhhhhHHHHHHh---cC-ccchHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 008754 492 LIGSLLTMLVTLILPCLCFLSIL---RG-KATRLQVALCVIIIVAGVVSSAIGSYSAILKIVE 550 (554)
Q Consensus 492 l~Gs~~~~~~~~ilP~l~~l~~~---~~-~~~~~~~~~~~~ii~~g~~~~v~gty~si~~ii~ 550 (554)
..|+..+....|+.|.+.+..-. ++ +.++ -...+-+++|+..+++++..+-....+
T Consensus 34 ~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~---~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 34 NLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPR---QKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcccccCCcCCc---cCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566688888987665311 11 1112 445667888999999998877766654
No 168
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=25.67 E-value=5.4e+02 Score=24.56 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhHHHHhhhhHHHHHHhcCccchHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 008754 489 VMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAILK 547 (554)
Q Consensus 489 vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gty~si~~ 547 (554)
+....|.+++.+...-+-.+++-|+..++.+......+++.+++-++.++.|.+.....
T Consensus 87 ~~~~~g~~~G~l~lvGl~~Ll~RR~~~~~vr~~s~~~D~~~L~lLl~i~~tG~~~~~~~ 145 (222)
T PF02665_consen 87 LAEVLGDIAGLLALVGLLILLVRRLFDPRVRAISTPSDYFVLLLLLAIVLTGLLMEGVR 145 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH--HHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666665544444444555544444333344556666666666666666654443
No 169
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=25.64 E-value=32 Score=30.75 Aligned_cols=8 Identities=38% Similarity=0.654 Sum_probs=4.2
Q ss_pred CCCccccc
Q 008754 83 GTPSLSRL 90 (554)
Q Consensus 83 ~~~~~~~~ 90 (554)
.-|++||-
T Consensus 105 tHPaiS~~ 112 (149)
T PF08595_consen 105 THPAISRT 112 (149)
T ss_pred CCcccccc
Confidence 34666554
No 170
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=25.63 E-value=51 Score=36.73 Aligned_cols=13 Identities=23% Similarity=0.061 Sum_probs=6.2
Q ss_pred HHHHHhhhhhhcc
Q 008754 259 IILESDNLSSLFP 271 (554)
Q Consensus 259 ~i~~~~~l~~l~~ 271 (554)
..++-|++..+..
T Consensus 442 ~~LiydiI~kl~~ 454 (822)
T KOG2141|consen 442 CSLIYDIIRKLAE 454 (822)
T ss_pred HHHHHHHHHHHHh
Confidence 3444455555543
No 171
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.08 E-value=4.2e+02 Score=22.38 Aligned_cols=63 Identities=19% Similarity=0.063 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHH-HHHHHHHHHHhhhhCCC
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVL-SFYTGILLRRCLDSEPG 223 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~l-s~~t~~~L~~~~~~~~~ 223 (554)
-|.+|..+......-+....=++++|.+.--.+|+ ....+++..++ -.++..+|.+..+-+|+
T Consensus 15 ~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe 79 (111)
T TIGR03750 15 FRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPE 79 (111)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCc
Confidence 56777777766555554444578888777666887 55555444444 45677888887655555
No 172
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=24.93 E-value=40 Score=39.04 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 008754 380 PKVLITCFLICTAMYAGVAY 399 (554)
Q Consensus 380 ~~~~~~s~~~~~~lY~~vg~ 399 (554)
.|.+-+.++++.++|+++++
T Consensus 1064 ~R~lGivlLvlYvvFLV~ai 1083 (1096)
T TIGR00927 1064 NKILGFTMFLLYFVFLIISV 1083 (1096)
T ss_pred echHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 173
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=24.34 E-value=6.7e+02 Score=24.45 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=13.5
Q ss_pred HhhHHHHhhhhHHHHHHhcC
Q 008754 497 LTMLVTLILPCLCFLSILRG 516 (554)
Q Consensus 497 ~~~~~~~ilP~l~~l~~~~~ 516 (554)
.+.-++|-+|.++.+-.+-+
T Consensus 173 l~fGl~FelPvi~~~L~~~g 192 (249)
T CHL00182 173 FSTGLAFQIPIIQIVLGLLN 192 (249)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 34456677899888876543
No 174
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=24.29 E-value=6.8e+02 Score=24.46 Aligned_cols=48 Identities=15% Similarity=0.364 Sum_probs=27.8
Q ss_pred HhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCc
Q 008754 370 YTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQ 419 (554)
Q Consensus 370 ~~emk~p~~~~~~~~~s~~~~~~lY~~vg~~gy~~fG~~~~~~i~~n~p~ 419 (554)
.+.+++| ++++.+.+-+++..++|...-..++..+++. .+.++...|+
T Consensus 18 ~~~l~~P-~lr~~~liPl~inllLf~~~l~~~~~~~~~~-l~~l~~~~p~ 65 (251)
T PRK04949 18 WKLILQP-GLRRFVILPLLVNILLFGGAFWWLFTQLDAW-IDWLMSQLPD 65 (251)
T ss_pred HHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcc
Confidence 3455433 4667777777777777777655555545432 2444445554
No 175
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=24.26 E-value=47 Score=40.66 Aligned_cols=10 Identities=40% Similarity=0.923 Sum_probs=4.4
Q ss_pred ceeecCCchh
Q 008754 9 SFYIESDEEE 18 (554)
Q Consensus 9 ~~~~~~~~~~ 18 (554)
+|.+|+||||
T Consensus 150 ~~~~d~~~~~ 159 (2849)
T PTZ00415 150 NFVIDDDDED 159 (2849)
T ss_pred ccccCCcccc
Confidence 3444444433
No 176
>KOG4553 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.07 E-value=44 Score=38.77 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=9.7
Q ss_pred CCCCCcceeecCCchh
Q 008754 3 NSVSDHSFYIESDEEE 18 (554)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (554)
|.-.-|-|+|.+|..+
T Consensus 1302 klsT~RDFkIk~~~lr 1317 (1398)
T KOG4553|consen 1302 KLSTYRDFKIKMEVLR 1317 (1398)
T ss_pred hhccccccccchhcch
Confidence 3344577888776643
No 177
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=23.96 E-value=27 Score=32.85 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCCCcceeecCCchhhhhhhhccCCCCC------------------------CCcCCCCCCCCCccccccCCCCCCC
Q 008754 1 MKNSVSDHSFYIESDEEEDEEKVFDVNGGEE------------------------DQEENDGNDSDSSAENQQQTHPGSY 56 (554)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (554)
|.++..+.-=+.+|+|++|-+-.+ .++|+| ..+++++|+||+..+..+..+....
T Consensus 193 rE~~qde~e~~~eEeE~~d~elE~-vtdD~e~e~~~~~dlekWl~~~~~~~ts~se~e~~sesesd~d~dednk~~~rkr 271 (303)
T COG5129 193 REKRQDEKERYVEEEEESDTELEA-VTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKR 271 (303)
T ss_pred HhhccchhhhhhhhhhcccceeEe-eccccccchhhHHHHHHHhccccchhccccccccccccccccccccccccchhhc
Q ss_pred CC
Q 008754 57 NT 58 (554)
Q Consensus 57 ~~ 58 (554)
++
T Consensus 272 k~ 273 (303)
T COG5129 272 KT 273 (303)
T ss_pred cc
No 178
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=23.84 E-value=7e+02 Score=24.47 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhhhcchhhhHHHHHHhhcCCC
Q 008754 426 IAVWTTVVNPFTKYALTISPVAMSLEELIPSN 457 (554)
Q Consensus 426 i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~ 457 (554)
-......+..+.+.|..++-.-.-+..-+.++
T Consensus 71 ~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~ 102 (258)
T PRK10921 71 PIKLTFMVSLILSAPVILYQVWAFIAPALYKH 102 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 34444556677788888765544444444443
No 179
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=23.82 E-value=4.5e+02 Score=28.99 Aligned_cols=19 Identities=26% Similarity=0.147 Sum_probs=12.3
Q ss_pred HhhHHHHhhhhHHHHHHhc
Q 008754 497 LTMLVTLILPCLCFLSILR 515 (554)
Q Consensus 497 ~~~~~~~ilP~l~~l~~~~ 515 (554)
...++.-++|+++.++.+-
T Consensus 125 ~~~l~~gvlP~~~~~~~~i 143 (545)
T PRK11598 125 LWLGLSGVLPALIACWIKI 143 (545)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3444455799988776654
No 180
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=22.77 E-value=45 Score=35.95 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred cceeecCCchhhhhhhh-ccCCCCCCCcCCCCCCCCCccccccCCC
Q 008754 8 HSFYIESDEEEDEEKVF-DVNGGEEDQEENDGNDSDSSAENQQQTH 52 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (554)
+-+-..+|-+|++.+++ |+..+|+|||++.++|+..+.....+.+
T Consensus 95 qEvq~q~d~eqq~~~~gS~~~~e~dDde~eEEdDksTsSk~ek~~k 140 (727)
T PF05642_consen 95 QEVQPQDDTEQQESDSGSSSDSEEDDDEEEEEDDKSTSSKSEKGSK 140 (727)
T ss_pred hhcchhhhhcccCCCCCCccccccccccccccccCCcccccccccc
No 181
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=22.34 E-value=55 Score=37.71 Aligned_cols=53 Identities=23% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCCCCcceeecCCchhhhhhhhccCCCCC--------------------CCcCCCCCCCCCccccccCCCCCC
Q 008754 3 NSVSDHSFYIESDEEEDEEKVFDVNGGEE--------------------DQEENDGNDSDSSAENQQQTHPGS 55 (554)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 55 (554)
+|.+...-.-++||+|++|+..+..++|+ |+.+|+++++++.++....+....
T Consensus 27 ~s~~~~~~~~~~de~D~~e~~e~~~dd~~~~~~k~~s~~gf~~~e~dvDdeveddd~~~edEed~~~~~~ie~ 99 (1024)
T KOG1999|consen 27 ESNSPADDEDTEDEGDEEEYDEDRKDDEPDEKDKKESGGGFIDREADVDDEVEDDDDDEEDEEDIELHNDIEE 99 (1024)
T ss_pred cccCCCccccccccccchhhcccccCcchhhhccccccccccccccccccccccccchhccCcchhhcccchh
No 182
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=22.34 E-value=4.8e+02 Score=22.03 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=23.7
Q ss_pred HHhhHHHHhhhhHHHHHHhcCccchHHHHHHHHHHHHHHHHhHHhHH
Q 008754 496 LLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSY 542 (554)
Q Consensus 496 ~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gty 542 (554)
+...++..++=.++++-+..++..+|+.... +..++-+++.+.|.+
T Consensus 53 ~~lA~iQi~vqLvyFlHM~~~~eg~w~~~~~-iFt~~i~vivvvGS~ 98 (111)
T COG3125 53 LGLAVIQILVHLVYFLHMNTKSEGRWNMGAL-IFTIFIIVIVVVGSI 98 (111)
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceehHHH-HHHHHHHHHHHHHHH
Confidence 3344566666666677666555556654322 223333444444544
No 183
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.71 E-value=3e+02 Score=22.01 Aligned_cols=38 Identities=13% Similarity=0.368 Sum_probs=20.0
Q ss_pred hHHhhccCCCC-chhHH-HHHHHHHHHHHHHHHHHHHHHhcC
Q 008754 368 NIYTSMAQPNQ-FPKVL-ITCFLICTAMYAGVAYMGYTMFGE 407 (554)
Q Consensus 368 ~i~~emk~p~~-~~~~~-~~s~~~~~~lY~~vg~~gy~~fG~ 407 (554)
+..+.-.+|.. ..|++ .++++ ..+-+++|++.|.++|.
T Consensus 32 dFSK~~s~~~~~~wRalSii~FI--lG~vl~lGilifs~y~~ 71 (91)
T PHA02680 32 DFSKNTSNVTDYVWRALSVTCFI--VGAVLLLGLFVFSMYRK 71 (91)
T ss_pred hhhccCCCCcchhHHHHHHHHHH--HHHHHHHHHHHHHHhcc
Confidence 44443334544 33333 33333 34445667888999983
No 184
>PRK11387 S-methylmethionine transporter; Provisional
Probab=21.56 E-value=9.1e+02 Score=25.74 Aligned_cols=47 Identities=6% Similarity=-0.065 Sum_probs=37.7
Q ss_pred CChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhcc
Q 008754 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFP 271 (554)
Q Consensus 225 ~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~ 271 (554)
..+.++.++..|+++..++.+...+..+++..+.+...+..+..+-.
T Consensus 275 ~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ar 321 (471)
T PRK11387 275 SPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSN 321 (471)
T ss_pred ChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 46778888888899988888888888888888888777777766654
No 185
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=21.44 E-value=6.9e+02 Score=23.54 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCCcchhhhHHHHHHHHHHHHHHhh--cch---------------
Q 008754 423 ATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLA--IPF--------------- 485 (554)
Q Consensus 423 ~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vA~~--vp~--------------- 485 (554)
...-......+..+.+.|..++-...-+..-+.+++++..........++.......+.. .|.
T Consensus 61 f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~~~~~~ 140 (215)
T PF00902_consen 61 FFTYLKLSFFLGLIISLPYILYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSPTSGIQ 140 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 333444555666777888887666544444444433332222223333333333333333 232
Q ss_pred ----hHHHHHHHH-HHHhhHHHHhhhhHHHHHHhcC
Q 008754 486 ----FGLVMSLIG-SLLTMLVTLILPCLCFLSILRG 516 (554)
Q Consensus 486 ----~~~vi~l~G-s~~~~~~~~ilP~l~~l~~~~~ 516 (554)
++..++++- -.....+.+-+|.++++-.+-+
T Consensus 141 ~~~~i~~y~~f~~~~~~~~gl~FqlPli~~~L~~~g 176 (215)
T PF00902_consen 141 PEPSISSYLNFVIQFLLIFGLIFQLPLIMFFLVRLG 176 (215)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 122222222 2344456677899888876543
No 186
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=21.09 E-value=55 Score=35.99 Aligned_cols=6 Identities=67% Similarity=1.104 Sum_probs=2.7
Q ss_pred ecCCch
Q 008754 12 IESDEE 17 (554)
Q Consensus 12 ~~~~~~ 17 (554)
++||||
T Consensus 521 VdSDeE 526 (811)
T KOG4364|consen 521 VDSDEE 526 (811)
T ss_pred ccCccc
Confidence 345543
No 187
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=21.02 E-value=4e+02 Score=32.47 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=21.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008754 374 AQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGES 408 (554)
Q Consensus 374 k~p~~~~~~~~~s~~~~~~lY~~vg~~gy~~fG~~ 408 (554)
|.-+|..+.+.+.-.++.++-.++.+.||+.|.++
T Consensus 2413 kSVTRNgrSIvlTa~LALILvYlFSIiGflffkdD 2447 (2706)
T KOG3533|consen 2413 KSVTRNGRSIVLTALLALILVYLFSILGFLFFKDD 2447 (2706)
T ss_pred HHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33345434444444455555567899999999654
No 188
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Probab=20.89 E-value=90 Score=35.97 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=8.1
Q ss_pred CCCCCCChhhhhhcc
Q 008754 55 SYNTSWPQSYRQSID 69 (554)
Q Consensus 55 ~~~~~~~~~~~~~~~ 69 (554)
+-+++--|.-||+..
T Consensus 147 ~~~~~~~~~~~~~~~ 161 (844)
T PTZ00482 147 SSNSQTDQGLKQSVN 161 (844)
T ss_pred ccccccchhhhhccc
Confidence 334555566666643
No 189
>PHA03132 thymidine kinase; Provisional
Probab=20.53 E-value=6.8e+02 Score=27.83 Aligned_cols=14 Identities=29% Similarity=0.263 Sum_probs=9.8
Q ss_pred CChhhhhhcccccC
Q 008754 60 WPQSYRQSIDLYSS 73 (554)
Q Consensus 60 ~~~~~~~~~~~~~~ 73 (554)
||+.=|+..|-++.
T Consensus 77 ~~~~~~~~~~~p~~ 90 (580)
T PHA03132 77 PPRGPEQTLDKPDS 90 (580)
T ss_pred CcCCcccccCCCCc
Confidence 77777777775555
Done!