Query 008754
Match_columns 554
No_of_seqs 261 out of 1707
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 2.3E-18 7.9E-23 182.5 34.8 241 161-408 7-253 (445)
2 3gia_A Uncharacterized protein 99.8 2.9E-16 9.8E-21 166.3 31.1 238 161-406 5-248 (444)
3 4djk_A Probable glutamate/gamm 99.7 1.8E-13 6.1E-18 147.5 35.9 238 161-408 10-263 (511)
4 2jln_A MHP1; hydantoin, transp 99.0 1.2E-06 4.1E-11 93.6 32.8 287 161-456 24-332 (501)
5 3dh4_A Sodium/glucose cotransp 98.4 0.0007 2.4E-08 72.7 33.2 148 161-320 19-168 (530)
6 2xq2_A Sodium/glucose cotransp 98.0 0.0083 2.8E-07 65.2 31.8 145 161-318 48-195 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.7 0.073 2.5E-06 56.3 35.7 294 161-455 6-372 (519)
8 4ain_A Glycine betaine transpo 85.9 37 0.0013 35.6 19.2 23 161-183 93-115 (539)
9 3tx3_A Uncharacterized protein 47.5 1.8E+02 0.0061 27.1 15.3 38 369-407 20-57 (249)
10 4aco_A Centromere DNA-binding 32.4 9.4 0.00032 41.6 0.0 9 8-16 675-683 (956)
11 3l1l_A Arginine/agmatine antip 31.3 3.9E+02 0.013 26.3 18.9 46 225-270 260-305 (445)
12 2wsw_A BCCT family betaine/car 27.7 5.3E+02 0.018 26.7 27.6 25 161-185 88-112 (509)
13 3gia_A Uncharacterized protein 27.1 4.6E+02 0.016 25.8 15.5 45 226-270 259-303 (444)
14 4b4a_A TATC, SEC-independent p 21.8 4.8E+02 0.016 24.1 14.4 89 428-516 66-177 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.85 E-value=2.3e-18 Score=182.46 Aligned_cols=241 Identities=10% Similarity=0.109 Sum_probs=174.0
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhH
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR 240 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~ 240 (554)
+|+.+.++.++..++.++|+|++.+|..+.++|..+++..++.+++.......+.+...+.|....+.+..++.+||+.+
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g 86 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLG 86 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHH
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHH
Confidence 78999999999999999999999999888888876777777788888888888888877777766788889999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHH
Q 008754 241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASI 320 (554)
Q Consensus 241 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i 320 (554)
++..+.+++........+....++++..+++....+ + ....+.++..+++..+. .+..+...+++.+..+..+
T Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~in-~~g~~~~~~~~~~~~~~~i 159 (445)
T 3l1l_A 87 YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP---W---VLTITCVVVLWIFVLLN-IVGPKMITRVQAVATVLAL 159 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH---H---HHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc---H---HHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHH
Confidence 999999988877777788888888888777643210 0 01222222222333333 3467777777665555444
Q ss_pred HHHHHHHhhhccc-cc-ccCCC--C-CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHHHHHH
Q 008754 321 LVVLCLFWVGLVD-QV-NIHSK--G-TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMY 394 (554)
Q Consensus 321 ~~~~~~~~~~~~~-~~-~~~~~--~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~~~lY 394 (554)
+.++.++..+... +. .+... + ...++.++..++....|+|.|++.+..+.+|+|||+| .+|++..+..+++++|
T Consensus 160 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y 239 (445)
T 3l1l_A 160 IPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCY 239 (445)
T ss_dssp HHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHH
Confidence 4443333333221 11 11111 1 1123567888999999999999999999999999976 9999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 008754 395 AGVAYMGYTMFGES 408 (554)
Q Consensus 395 ~~vg~~gy~~fG~~ 408 (554)
+++.+......+.+
T Consensus 240 ~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 240 VLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHSCTT
T ss_pred HHHHHHHHhcCCHH
Confidence 99998887777644
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.77 E-value=2.9e-16 Score=166.33 Aligned_cols=238 Identities=14% Similarity=0.147 Sum_probs=164.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchh-
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPY-AAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA- 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~-a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~- 238 (554)
+|+.+.++.++..++.++|+|++.+|. +...+|...++.+++.+++...+...+.+...+.|......+..++.+|++
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~~ 84 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNI 84 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSSH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcch
Confidence 789999999999999999999999884 456777656667777778888888888888877777667778899999996
Q ss_pred -hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 239 -GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 239 -g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
+++ +.+.+++.....+..+....++++..+++.... .+ ....+.++..+++..+. .+..+...++..+...
T Consensus 85 ~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~in-~~g~~~~~~~~~~~~~ 156 (444)
T 3gia_A 85 ITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAPIN---TF---NIAITEIGIVAFFTALN-FFGSKAVGRAEFFIVL 156 (444)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC---HH---HHHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc---hH---HHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 343 356666666667777888888888887754211 00 01122222222222233 3466666666655544
Q ss_pred HHHHHHHHHHhhhcc--cccccCCCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHHHHHH
Q 008754 318 ASILVVLCLFWVGLV--DQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMY 394 (554)
Q Consensus 318 ~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~~~lY 394 (554)
..+..++.++..++. +..++.+...+.++.++..++....|+|.|++.+....+|+|||+| .+|++..++.+++++|
T Consensus 157 ~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y 236 (444)
T 3gia_A 157 VKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVY 236 (444)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHH
Confidence 444333333222221 1112222222334556778888899999999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHhc
Q 008754 395 AGVAYMGYTMFG 406 (554)
Q Consensus 395 ~~vg~~gy~~fG 406 (554)
+++.+......+
T Consensus 237 ~~~~~~~~~~~~ 248 (444)
T 3gia_A 237 VGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHhCCC
Confidence 999887766554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.67 E-value=1.8e-13 Score=147.47 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=147.1
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhh--hCCCCCChHHHHHHHhch
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSF-YTGILLRRCLD--SEPGLETYPDIGQAAFGT 237 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~-~t~~~L~~~~~--~~~~~~~y~~l~~~~~G~ 237 (554)
+|+.+.++.++..++.++| +..+|. ...+|...++..++.+++.. .+...+.+... +.| ........++.+|+
T Consensus 10 ~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~~g~ 85 (511)
T 4djk_A 10 AKQLTLLGFFAITASMVMA--VYEYPT-FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNTLGP 85 (511)
T ss_dssp --CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHHHCH
T ss_pred CccccHHHHHHHHHHHHHh--hchhHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhhcCc
Confidence 7899999999999999996 567775 45667655544444444433 35666677766 666 66777789999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhc--cccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHH
Q 008754 238 AGRIAVSVILYAELYACCIEYIILESDNLSSLF--PNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGG 315 (554)
Q Consensus 238 ~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~--~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~ 315 (554)
+.+++..+..++........+....+..+..++ +.... ..+. ...+.++..+++..+. .+..+...++..+.
T Consensus 86 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~---~~~~~~~~~~~~~~in-~~g~~~~~~~~~~~ 159 (511)
T 4djk_A 86 RWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNE--DPIT---KTIAALIILWALALTQ-FGGTKYTARIAKVG 159 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTS--CSSH---HHHHHHHHHHHHHHHH-HTCSSSHHHHTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc--CcHH---HHHHHHHHHHHHHHHH-HhChHHHHHHHHHH
Confidence 999999998888777666667777777776553 22211 1110 1222222333333333 34677777666554
Q ss_pred HHH-HHHHHHHHHhhhc----cccc-c--cCCCCC--ccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHH
Q 008754 316 VIA-SILVVLCLFWVGL----VDQV-N--IHSKGT--PLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLI 384 (554)
Q Consensus 316 ~~~-~i~~~~~~~~~~~----~~~~-~--~~~~~~--~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~ 384 (554)
.+. .+..++.++..+. .++. + ...... .....+...++...+|+|.|++.+..+.+|+|||+| .+|++.
T Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 160 FFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp HHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 332 1111111111111 1110 0 011111 111123445677889999999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 008754 385 TCFLICTAMYAGVAYMGYTMFGES 408 (554)
Q Consensus 385 ~s~~~~~~lY~~vg~~gy~~fG~~ 408 (554)
.++.+++++|++..+......+++
T Consensus 240 ~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 240 LLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHeecCHh
Confidence 999999999999998877766543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.95 E-value=1.2e-06 Score=93.59 Aligned_cols=287 Identities=10% Similarity=0.040 Sum_probs=161.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchhHHHHHh-hcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKE-GGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~-~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~ 238 (554)
+|+.+.++-+..-++..++.+.+.+...+.. .++. .++.+++..++....+.++.....+. + .+|..+.+..||++
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~-G-l~~~v~~R~~FG~~ 101 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW-G-INFTVAARMPFGIR 101 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-C-CCHHHHTTTTSCTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-C-CChhhhhHhhcchh
Confidence 5667888888888888888877777655543 2344 66555555555555555555554333 3 35999999999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 239 GRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 239 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
|..+..++..+.++|-...-....++.+..++.... ... ......++..++.+++.+. ..+.+.++..+....
T Consensus 102 Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g~~-----~~~v~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 102 GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GFT-----NLPLWIVIFGAIQVVTTFY-GITFIRWMNVFASPV 174 (501)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC-----CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccc-----hHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 999999998888888888888888888877753211 000 0233444455566666544 677777776665544
Q ss_pred HHHHHHHHHhhhccc-cc--c-cCCCCCccccCchhHHHHH-HHHhhccccchhhHHhhccCCCC------------chh
Q 008754 319 SILVVLCLFWVGLVD-QV--N-IHSKGTPLNLATLPVAIGL-YGYCYSGHAVFPNIYTSMAQPNQ------------FPK 381 (554)
Q Consensus 319 ~i~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~a~~~-~~faf~g~~~i~~i~~emk~p~~------------~~~ 381 (554)
.++.++.+.+..+.. +. + ....+.......+..++.. +.+.-....+.+.+.+.+|++++ ...
T Consensus 175 ~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~ 254 (501)
T 2jln_A 175 LLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYAT 254 (501)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHH
Confidence 444333332222111 11 0 0011111223344454443 23333344678899999998887 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcC-CCchhHHHHHHH-HHHHHhhhhhhc-chhhhHHHHHHhhcCC
Q 008754 382 VLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLN-MPQDLVATKIAV-WTTVVNPFTKYA-LTISPVAMSLEELIPS 456 (554)
Q Consensus 382 ~~~~s~~~~~~lY~~vg~~gy~~fG~~~~~~i~~n-~p~~~~~~~i~~-~~~~i~~~~s~p-l~~~p~~~~l~~~l~~ 456 (554)
...++..+..++..++|+..-...+......+... ++.......++. ++.++..+++-. ..+++....+..+.++
T Consensus 255 g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~ 332 (501)
T 2jln_A 255 AQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPR 332 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCcc
Confidence 34445555555555566544333333333333322 211111123334 444444444333 3677888888888765
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.38 E-value=0.0007 Score=72.67 Aligned_cols=148 Identities=10% Similarity=0.038 Sum_probs=85.6
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAG 239 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g 239 (554)
.|+.+++...+.+..+.+++. ++++|-.....|+.+.......++.....+..+.... ++.+..|++|..++-||++.
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~-~~~~~~T~~e~l~~Rfg~~~ 97 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIF-IEKGIYTIPEFVEKRFNKKL 97 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHH-HHTTCCSHHHHHHHHTCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHHHHcCcHH
Confidence 789999999999999999886 8899977777776522111111111112222233333 34577899999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHH
Q 008754 240 RIAVSVILYA-ELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIA 318 (554)
Q Consensus 240 ~~~~~i~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~ 318 (554)
+.+..++..+ +.+..+.+-+...+..++.++. .+ .....++.+++++..+..-.++...+.-.+-.+.
T Consensus 98 ~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-i~----------~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~i 166 (530)
T 3dh4_A 98 KTILAVFWISLYIFVNLTSVLYLGGLALETILG-IP----------LMYSILGLALFALVYSIYGGLSAVVWTDVIQVFF 166 (530)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CC----------HHHHHHHHHHHHHHTTC------CCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 8887776543 3333333334444555666653 11 2334445555555566666777777776665444
Q ss_pred HH
Q 008754 319 SI 320 (554)
Q Consensus 319 ~i 320 (554)
.+
T Consensus 167 m~ 168 (530)
T 3dh4_A 167 LV 168 (530)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.00 E-value=0.0083 Score=65.19 Aligned_cols=145 Identities=10% Similarity=0.058 Sum_probs=80.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchh
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTA 238 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~ 238 (554)
.|+.+++...+.+..+.+++. +++.|....+.|+. ...... .++.....+..+..-. ++.+..|.+|..++-||++
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~-~r~~~~T~~e~l~~Rfg~~ 125 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIF-IEKGIYTIPEFVEKRFNKK 125 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHH-HHTTCCSHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHccCc
Confidence 688999999999988888886 77888766667764 211111 1111111122222323 3457789999999999999
Q ss_pred hHHHHHHHHHH-HHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHH
Q 008754 239 GRIAVSVILYA-ELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVI 317 (554)
Q Consensus 239 g~~~~~i~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~ 317 (554)
.+.+..++..+ ..+.....-+...+..++.+++- + .....++.+++++..+..-.++...+.-.+-.+
T Consensus 126 ~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi-~----------~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 126 LKTILAVFWISLYIFVNLTSVLYLGGLALETILGI-P----------LMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-c----------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88877765443 33333333344456666666531 1 223334444555555556677776666655444
Q ss_pred H
Q 008754 318 A 318 (554)
Q Consensus 318 ~ 318 (554)
.
T Consensus 195 i 195 (593)
T 2xq2_A 195 F 195 (593)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.72 E-value=0.073 Score=56.32 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=136.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-hchhHHHHH-hhcH---H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHH
Q 008754 161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAAK-EGGW---F-GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAA 234 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~~-~~G~---~-g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~ 234 (554)
++-.|..+-++..++..+|-| +.-.||-.. +.|- + -++.++++|+-..+.=..+++-..++.+ .+-...-++.
T Consensus 6 ~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r-~~~i~a~~~l 84 (519)
T 2a65_A 6 EHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-GTTPAIFYLL 84 (519)
T ss_dssp CCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-CSHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC-CCHHHHHHHh
Confidence 455688999999999999999 999998775 5553 3 4444455555555565666663321221 1222222222
Q ss_pred hchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccC----CCc-------------c---------------cc
Q 008754 235 FGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLS----FGG-------------F---------------YL 282 (554)
Q Consensus 235 ~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~----~~~-------------~---------------~~ 282 (554)
..++....+.+..++..+..++-|.++.+-.+..++...... +.. + ..
T Consensus 85 ~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~ 164 (519)
T 2a65_A 85 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKP 164 (519)
T ss_dssp SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCC
T ss_pred cCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCc
Confidence 221111112222222333333334444443333322111100 000 0 00
Q ss_pred chhHHHHHHHHHHHhhhccccCC-chhhHhHHHHHHHHHHHHHHHHhhhcc-cc--------cc--cCCCCCc-cccCch
Q 008754 283 NSHHLFALMTTLAVLPTCWLRDL-TVLSYISAGGVIASILVVLCLFWVGLV-DQ--------VN--IHSKGTP-LNLATL 349 (554)
Q Consensus 283 ~~~~~~~iv~~li~~pl~~~~~l-~~l~~~s~~~~~~~i~~~~~~~~~~~~-~~--------~~--~~~~~~~-~~~~~~ 349 (554)
.-+.....+.+.++.-++..|.+ +...+++.+-+....++++++++.+.. ++ .. +.++... .+..-+
T Consensus 165 ~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw 244 (519)
T 2a65_A 165 SLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVW 244 (519)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHH
Confidence 01112222333334445566677 556666655444444444444444332 12 11 1111111 123346
Q ss_pred hHHHHHHHHhhcc-ccchhhHHhhccCCCCchh-HHHHHHH-HHHHHHH---HHHHHHHHHhcCC-c-----hh------
Q 008754 350 PVAIGLYGYCYSG-HAVFPNIYTSMAQPNQFPK-VLITCFL-ICTAMYA---GVAYMGYTMFGES-T-----LS------ 411 (554)
Q Consensus 350 ~~a~~~~~faf~g-~~~i~~i~~emk~p~~~~~-~~~~s~~-~~~~lY~---~vg~~gy~~fG~~-~-----~~------ 411 (554)
..|++.+.|+++. ...+...-+.+|+.++..+ ++.++.. ..+.+.. +++..||.++|.+ . .+
T Consensus 245 ~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~pgL~F 324 (519)
T 2a65_A 245 IAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGF 324 (519)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCceeH
Confidence 7899999999975 4555666666776677555 3333333 2222222 2233455445533 1 11
Q ss_pred ----hhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcC
Q 008754 412 ----QFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIP 455 (554)
Q Consensus 412 ----~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~ 455 (554)
.+..++|.......+-..+..+.-+++.--.+.+....+.+.++
T Consensus 325 i~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~ 372 (519)
T 2a65_A 325 ITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK 372 (519)
T ss_dssp THHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhC
Confidence 12345664444433333333444444444445566666666554
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=85.88 E-value=37 Score=35.60 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhc
Q 008754 161 SRQSSYAQALLNGMNVLCGVGIL 183 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiL 183 (554)
+++-|.++-+..+..+-+|+|++
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~ 115 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLM 115 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHH
T ss_pred CCCCcchHHHHHHHHHhhcchhe
Confidence 56778999999999999999987
No 9
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=47.48 E-value=1.8e+02 Score=27.08 Aligned_cols=38 Identities=5% Similarity=-0.033 Sum_probs=25.6
Q ss_pred HHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008754 369 IYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGE 407 (554)
Q Consensus 369 i~~emk~p~~~~~~~~~s~~~~~~lY~~vg~~gy~~fG~ 407 (554)
-.+.+.+| ++++.+.+...+..++|.......+..+++
T Consensus 20 g~~~i~~p-~lr~~vl~Pllinl~L~~~~~~~~~~~~~~ 57 (249)
T 3tx3_A 20 GLELIRTK-GLRRYVVVPILTNLILFSLAFTWLYGEVDY 57 (249)
T ss_dssp HHHHHTST-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667 778888888888888877765554444443
No 10
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=32.42 E-value=9.4 Score=41.62 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=0.0
Q ss_pred cceeecCCc
Q 008754 8 HSFYIESDE 16 (554)
Q Consensus 8 ~~~~~~~~~ 16 (554)
+-+.+++++
T Consensus 675 ~lldi~~~s 683 (956)
T 4aco_A 675 RLLSIADSS 683 (956)
T ss_dssp ---------
T ss_pred Ccccccccc
Confidence 344555443
No 11
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.28 E-value=3.9e+02 Score=26.34 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=38.8
Q ss_pred CChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhc
Q 008754 225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLF 270 (554)
Q Consensus 225 ~~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~ 270 (554)
..+.++.++.+|+++..++.+...+..+++...++...+..+..+-
T Consensus 260 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a 305 (445)
T 3l1l_A 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_dssp CTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999998888888888888888888776654
No 12
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=27.66 E-value=5.3e+02 Score=26.67 Aligned_cols=25 Identities=12% Similarity=-0.043 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhchh
Q 008754 161 SRQSSYAQALLNGMNVLCGVGILST 185 (554)
Q Consensus 161 ~~~~s~~~a~~~li~~iiG~GiLsl 185 (554)
+++-|.++-+..+..+-+|.|++--
T Consensus 88 kPefs~~sW~aMlF~aGmGiGl~fw 112 (509)
T 2wsw_A 88 KPEFSTASWIFMMFASCTSAAVLFW 112 (509)
T ss_dssp CCSSCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCccchHHHHHHHHhhhhHHhhh
Confidence 5677889999999999999997653
No 13
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=27.07 E-value=4.6e+02 Score=25.82 Aligned_cols=45 Identities=13% Similarity=0.058 Sum_probs=32.9
Q ss_pred ChHHHHHHHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhc
Q 008754 226 TYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLF 270 (554)
Q Consensus 226 ~y~~l~~~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~ 270 (554)
...++.+..+|+++..++.+...+..+++..+.+...+..+..+-
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a 303 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLA 303 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888898888888888777777777777666666665443
No 14
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=21.75 E-value=4.8e+02 Score=24.09 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHhhhhhhcchhhhHHHHHHhhcCCCCCCcchhhhHHHHHHHHHHHHHHhhc--------------------c--h
Q 008754 428 VWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLAI--------------------P--F 485 (554)
Q Consensus 428 ~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vA~~v--------------------p--~ 485 (554)
........+.+.|..++-.-.-+..-+.++.++..........++.......+..+ + +
T Consensus 66 kvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~ 145 (249)
T 4b4a_A 66 KISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLS 145 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhh
Confidence 33444566677888776655444444555544433333333333333434444321 2 3
Q ss_pred hHHHHHHHHHH-HhhHHHHhhhhHHHHHHhcC
Q 008754 486 FGLVMSLIGSL-LTMLVTLILPCLCFLSILRG 516 (554)
Q Consensus 486 ~~~vi~l~Gs~-~~~~~~~ilP~l~~l~~~~~ 516 (554)
++.-++++-.+ ...-++|-+|.++.+-.+-+
T Consensus 146 i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~G 177 (249)
T 4b4a_A 146 VDMYISFVLKLVVAFGIAFEMPIVLYVLQKAG 177 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444443322 33446778999988876544
Done!