BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008755
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 144/375 (38%), Gaps = 29/375 (7%)
Query: 60 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
GL V DLF ++G T G L E GA KT E A
Sbjct: 67 GLPLTVKDLFPVKGMPTRAGT---KAPLPPLPEEARAVRRLREAGALLFAKTNXHEIALG 123
Query: 120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
I G N N PS+ + SLG DT G +R+P+ F G++G
Sbjct: 124 ITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVG 183
Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL--QLPFAAQRSPRQIIIAD 237
F+PSYG VS G +P+S S D G R + + +L +P ++P
Sbjct: 184 FKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPLEGVQNP------- 236
Query: 238 DCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL-GEYFDSKVPSLKGFHKTNGELKNV 296
+ +P D + + K F R + L E + +P L+G ++
Sbjct: 237 ----VFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP-LEGVYEV------Y 285
Query: 297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSL 356
RL+ RYE H + ++ P + + L ++E + + R +R +
Sbjct: 286 TRLV-RYEAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKA 344
Query: 357 LKDDGILVTPTTAYPPPKLGGKEMLSEDYQ---NRAFSLLSIA-SVSGCCQVTVPLGYYD 412
L+ L+ P P P LG +E+ E + AF L++ S+ G + +P +
Sbjct: 345 LRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKVE 404
Query: 413 KCPTSVSFIARHGGD 427
P + + +G D
Sbjct: 405 GXPVGLQVVGAYGED 419
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D
Sbjct: 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
T+AI LDKK +K Y RR + LG ++ A+
Sbjct: 64 TRAIELDKKYIKGYYRRAASNMALGKFRAAL 94
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDT 164
A IGK +DEFA + ++ NP +P LV SLG DT
Sbjct: 116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDT 175
Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 210
G +R P+A+CG++G +P+YG VS G++ ++SLD +G R+ K
Sbjct: 176 GGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D
Sbjct: 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
T+AI LDKK +K Y RR + LG ++ A+
Sbjct: 71 TRAIELDKKYIKGYYRRAASNMALGKFRAAL 101
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L + GA +GKT +DEFA + + NP ++P S
Sbjct: 104 LKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVS 163
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
LG DT G +R P++FCG++G +P+YG VS G++ ++SLD +G F R
Sbjct: 164 LGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGR 211
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D
Sbjct: 19 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDA 78
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
T+AI LDKK +K Y RR + LG ++ A+
Sbjct: 79 TRAIELDKKYIKGYYRRAASNMALGKFRAAL 109
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLG 161
E G +GK +DEFA + + NP ++P +V +LG
Sbjct: 100 EAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALG 159
Query: 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 215
DT G VR P++ CG++G++P+YG VS G++ ++SLD +G RD IL +
Sbjct: 160 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEI 216
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%)
Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGID 163
GA +GKT +DEF + + + NP P ++P DL +LG D
Sbjct: 102 GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSD 161
Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
T G VR P+AFCG+ G +P+YG VS G+I ++SLD +G AR
Sbjct: 162 TGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMAR 205
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 54/375 (14%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L+ GAT GK V ++ +S + NP + VDF+
Sbjct: 128 LLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFA 187
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
+G D G +R+P+AFCG++G +P++G V + G PI ++D +G I R V
Sbjct: 188 IGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAA 241
Query: 220 LQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGE 274
L L A R PRQ + A D L D + +++ + FG V + E + +
Sbjct: 242 LMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE-VDD 297
Query: 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKPALDP 322
+ SL T E+ N+ + + N + N + + + DP
Sbjct: 298 AVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDP 356
Query: 323 DISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISSLLKD 359
++ A I +SETV +++ R+A + L+
Sbjct: 357 ELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQ 416
Query: 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYDKCPT 416
+LV PT Y +L K++ + +A +++ + V+G ++VP G + P
Sbjct: 417 FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPV 476
Query: 417 SVSFIARHGGDRFLL 431
+ RH D +L
Sbjct: 477 GMMITGRHFDDATVL 491
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 7/97 (7%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
AE K +GN+ K + + A+ FY +AI+LN NA Y+ NRAAAY + G++ A DC +
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 524 AINLDKKNVKAYLRRGTAR-------EMLGYYKEAIE 553
AI +D KAY R G A E + YYK+A+E
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 54/375 (14%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L+ GAT GK V ++ +S + NP + VDF+
Sbjct: 128 LLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFA 187
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
+G D G +R+P+AFCG++G +P++G V + G PI ++D +G I R V
Sbjct: 188 IGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAA 241
Query: 220 LQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGE 274
L L A R PRQ + A D L D + +++ + FG V + E + +
Sbjct: 242 LMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE-VDD 297
Query: 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKPALDP 322
+ SL T E+ N+ + + N + N + + + DP
Sbjct: 298 AVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDP 356
Query: 323 DISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISSLLKD 359
++ A I +SETV +++ R+A + L+
Sbjct: 357 ELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQ 416
Query: 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYDKCPT 416
+LV PT Y +L K++ + +A +++ + V+G ++VP G + P
Sbjct: 417 FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPV 476
Query: 417 SVSFIARHGGDRFLL 431
+ RH D +L
Sbjct: 477 GMMITGRHFDDATVL 491
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLG 161
E G +GK +DEFA + + NP ++P V +LG
Sbjct: 101 EAGFVVVGKANLDEFAXGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALG 160
Query: 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 215
DT G VR P++ CG++G++P+YG VS G++ ++SLD +G RD IL +
Sbjct: 161 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEI 217
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 430 LLDTVQNMYASLQEQ--ADIATK--------SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 479
L T++ SL E ADI TK K + + AE A+ +G + +
Sbjct: 95 LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154
Query: 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
W A+ YTE IK +A YSNRAAA + SF +A ADC KAI D V+AY+R+
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214
Query: 540 TAREMLGYYKEAIE 553
TA+ + Y A+E
Sbjct: 215 TAQIAVKEYASALE 228
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
A+ K +GN+ YK +Q+ +AI Y +A +L+ + TY +NRAAA E G + A +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63
Query: 524 AI------NLDKKNV-KAYLRRGTAREMLGYYKEAIE 553
A+ D K + K++ R G A LG K+ IE
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
AE A+ +G + + W A+ YTE IK +A YSNRAAA + SF +A ADC K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
AI D V+AY+R+ TA+ + Y A+E
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALE 93
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 60 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
G+ FAV D D+ G P + L GA +GKT +D+FA
Sbjct: 97 GVPFAVKDNIDVAGLPCSAACPAFTYEPDRDATVVAR---LRAAGAIVLGKTNLDQFATG 153
Query: 120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
+ GT + P + LV FSLG DT G RVP+AF ++G
Sbjct: 154 LVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAAFNNLVG 213
Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFA 206
+P+ G +S G++P SLD V FA
Sbjct: 214 VKPTKGLLSTSGVVPACRSLDCVTVFA 240
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
SAE K GN YK + KAI +Y +A++L+ NNA+ + N AY + G + +A
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
KA+ LD N KA+ RRG A G Y++AIE
Sbjct: 68 KALELDPNNAKAWYRRGNAYYKQGDYQKAIE 98
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
GN YK + KAI +Y +A++L+ NNA + R AY + G + +A D KA+ LD
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 531 NVKAYLRRGTAREMLG 546
N KA G A++ G
Sbjct: 110 NAKAKQNLGNAKQKQG 125
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
GN+A + N AY + G + +A KA+ LD N A+ G A G Y++AIE
Sbjct: 6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
A + K KGN+ ++ + +A+ YTEAIK N +A YSNRAA Y + F A DC +
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
I L+ +K Y R+ A E + Y +A++
Sbjct: 76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMD 105
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 137/374 (36%), Gaps = 78/374 (20%)
Query: 100 LVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXD 154
L + GA +GKT + E+A SI+G + NP S P +
Sbjct: 117 LRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAAN 176
Query: 155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRH 214
L ++G +T G + P+A G++G +P+ G VS GIIPIS S DT G A R
Sbjct: 177 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMA------RS 230
Query: 215 VGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIK-STEKLFGRQV------- 266
V L A R D +P V + + L G+++
Sbjct: 231 VADAAAVLTAIAGRD-------DADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL 283
Query: 267 LKHENLGEYFDSKVPSLK--GFHKTNGELKN------VMRLIQRYEFK-------NNHNE 311
LK+ + + L+ G EL N R + YEFK N H
Sbjct: 284 LKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRA 343
Query: 312 WIESVKPALDPDISA--------EIG----EMLEISETVIENCKSIRNEMRSAISSLLKD 359
+ S+ D+ A E+G E+L ++ RS L
Sbjct: 344 PLRSLA-----DLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGP 398
Query: 360 DGI-----------LVTPTTAYP-PPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 407
+GI LV PTT P + G + E Y S A+V+G +TVP
Sbjct: 399 EGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESY--------SAAAVAGYPSLTVP 450
Query: 408 LGYYDKCPTSVSFI 421
+G D P + F+
Sbjct: 451 MGQIDGLPVGLLFM 464
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
SA+ KE+GN+ + +++ +A + Y AI N A YY+NRA YL+ QA ADC
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
+A+ LD ++VKA+ G + + Y EAI
Sbjct: 68 RALELDGQSVKAHFFLGQCQLEMESYDEAI 97
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
SA+ KE+GN+ + +++ +A + Y AI N A YY+NRA YL+ QA ADC
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
+A+ LD ++VKA+ G + + Y EAI
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAI 92
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 444 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 502
+ DIA LS + Q+Q+ + K +GN + K + +AI +Y AI+L+ N +YS
Sbjct: 7 EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 63
Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
N +A Y+ +G + TKA+ + + KA LRR +A E LG + +A+
Sbjct: 64 NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 444 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 502
+ DIA LS + Q+Q+ + K +GN + K + +AI +Y AI+L+ N +YS
Sbjct: 3 EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 59
Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
N +A Y+ +G + TKA+ + + KA LRR +A E LG + +A+
Sbjct: 60 NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 109
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
A+ K KGN+ +K + A+ Y EA+K + NA YSNRAA + F +A DC
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 524 AINLDKKNVKAYLRRG 539
I LD K +K Y+R+
Sbjct: 73 CIRLDSKFIKGYIRKA 88
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
K +GN A K++ KAI YT+A+ + N Y SNRAAAY SG +A D A +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIE 553
D K KA+ R G AR + YK A E
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKE 100
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
KEKGN+A A+ Y+EAIKL+ +N YSNR+AAY + G + +A D K ++L
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 528 DKKNVKAYLRRGTAREMLGYYKEA 551
K Y R+ A E L ++EA
Sbjct: 68 KPDWGKGYSRKAAALEFLNRFEEA 91
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L GAT IGKT FA ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSAGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R + +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
+ F+ ++PR ++ + ++ A++ +Q IK+ E+ + + E +
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
E + P ++ F +EF +H+E + P L + A +G
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
++ + + I R + + + +L+T Y P + L+ + NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
+L+ G V VP+ P V IAR G D L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L GAT IGKT FA ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R + +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
+ F+ ++PR ++ + ++ A++ +Q IK+ E+ + + E +
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
E + P ++ F +EF +H+E + P L + A +G
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
++ + + I R + + + +L+T Y P + L+ + NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
+L+ G V VP+ P V IAR G D L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEA 519
S E +++GN+ +K + A++ YT+A+ L+ + A + NRAA +L+ + +AE
Sbjct: 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
+ +KAI D +VKA RR A E LG +A+
Sbjct: 87 EASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
KE GN AYK K + A+ Y +A +L+ N TY +N+AA Y E G + + C KAI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKN-------VKAYLRRGTAREMLGYYKEAI 552
++N KAY R G + YK+AI
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
KE GN AYK K + A+ Y +A +L+ N TY +N+AA Y E G + + C KAI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKN-------VKAYLRRGTAREMLGYYKEAI 552
++N KAY R G + YK+AI
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
K+KGNQ +++K++ AI +Y A++L + +YSN +A Y+ G + TKA+ L
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 528 DKKNVKAYLRRGTAREMLGYYKEAI 552
K LRR +A E LG + +A+
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADAM 93
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 485 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
+++ +A+KL+ NN++ Y +R ++ QA D KA LD +N+ Y++
Sbjct: 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L GAT IGKT FA ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R + +
Sbjct: 148 LGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
+ F+ ++PR ++ + ++ A++ +Q IK+ E+ + + E +
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
E + P ++ F +EF +H+E + P L + A +G
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
++ + + I R + + + +L+T Y P + L+ + NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
+L+ G V VP+ P V IAR G D L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L GAT IGKT FA ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R + +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
+ F+ ++PR ++ + ++ A++ +Q IK+ E+ + + E +
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
E + P ++ F +EF +H+E + P L + A +G
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
++ + + I R + + + +L+T Y P + L+ + NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
+L+ G V VP+ P V IAR G D L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L GAT IGKT FA ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R + +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
+ F+ ++PR ++ + ++ A++ +Q IK+ E+ + + E +
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
E + P ++ F +EF +H+E + P L + A +G
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
++ + + I R + + + +L+T Y P + L+ + NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
+L+ G V VP+ P V IAR G D L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L GAT IGKT FA ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R + +
Sbjct: 148 LGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
+ F+ ++PR ++ + ++ A++ +Q IK+ E+ + + E +
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
E + P ++ F +EF +H+E + P L + A +G
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
++ + + I R + + + +L+T Y P + L+ + NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
+L+ G V VP+ P V IAR G D L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L GAT IGKT FA ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R + +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
+ F+ ++PR ++ + ++ A++ +Q IK+ E+ + + E +
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
E + P ++ F +EF +H+E + P L + A +G
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
++ + + I R + + + +L+T Y P + L+ + NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
+L+ G V VP+ P V IAR G D L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
L GAT IGKT FA ++ NP P ++ +
Sbjct: 94 LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
LG T G V P+A+CG +PS+ + +G+ S +LDTVG F AR + R + +
Sbjct: 148 LGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
+ F+ ++PR ++ + ++ A++ +Q IK+ E+ + + E +
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
E + P ++ F +EF +H+E + P L + A +G
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
++ + + I R + + + +L+T Y P + L+ + NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
+L+ G V VP+ P V IAR G D L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
SAE GN YK + +AI +Y +A++L+ NNA + N AY + G + +A
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
KA+ LD N +A+ G A G Y EAIE
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
+AE GN YK + +AI +Y +A++L+ NNA + N AY + G + +A
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 523 KAINLDKKNVKAYLRRGTAREMLG 546
KA+ LD N +A G A++ G
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQG 125
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
GN+A + N AY + G + +A KA+ LD N +A+ G A G Y EAIE
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
KE GN AYK K + A+ Y +A +L+ N TY N+AA Y E G + + C KAI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKNVKAYLRRGTAREMLG--YYKE 550
++N + Y A +G Y+KE
Sbjct: 68 GRENREDYRMIAYAYARIGNSYFKE 92
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
K+ GN AYK K + KA Y +AI+L+ +N T+Y+N+AA Y E F + C KA+ +
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
SAE GN YK + +AI +Y +A++L NNA + N AY + G + +A
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
KA+ L N +A+ G A G Y EAIE
Sbjct: 68 KALELYPNNAEAWYNLGNAYYKQGDYDEAIE 98
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
+AE GN YK + +AI +Y +A++L NNA + N AY + G + +A
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 523 KAINLDKKNVKAYLRRGTAREMLG 546
KA+ L N +A G A++ G
Sbjct: 102 KALELYPNNAEAKQNLGNAKQKQG 125
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
GN+A + N AY + G + +A KA+ L N +A+ G A G Y EAIE
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+SAE GN YK + +AI +Y +A++L+ +A + N AY + G + +A
Sbjct: 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
KA+ LD ++ +A+ G A G Y EAIE
Sbjct: 93 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
GN YK + +AI +Y +A++L+ +A + N AY + G + +A KA+ LD +
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
+ +A+ G A G Y EAIE
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIE 90
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+SAE GN YK + +AI +Y +A++L+ +A + N AY + G + +A
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 522 TKAINLDKK 530
KA+ LD +
Sbjct: 127 QKALELDPR 135
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
SAE GN YK + +AI +Y +A++L+ NNA + N AY + G + +A
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLG 546
KA+ LD N +A G A++ G
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
GN+A + N AY + G + +A KA+ LD N +A+ G A G Y EAIE
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEA------------------IKLNGNNATY 500
++ +S E ++KGN+ + K + +AI Y +A ++L+ N
Sbjct: 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
Y+N + YL G +AE ++ + ++ N KA RR AR
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKAR 107
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV------GWFAR 207
G D G VR+P++ CG++G +P+ G +S P+ T D V G FAR
Sbjct: 168 GNDAAGAVRIPASVCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFAR 217
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV------GWFAR 207
G D G VR+P++ CG++G +P+ G +S P+ T D V G FAR
Sbjct: 168 GNDAAGSVRIPASVCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFAR 217
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524
E KE+GN +K + +A+ Y + I N YSN+A A ++ G + QA C +
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 525 IN 526
+
Sbjct: 65 LR 66
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 23/129 (17%)
Query: 438 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI------ 491
+ +E ++ TK KL + A I KEKG +K ++++A+ Y + +
Sbjct: 250 FEKAKESWEMDTKEKL--------EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 492 -----KLNGNNATY----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
K + + ++ + N A YL+ + +A C KA+ LD N K RRG A+
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361
Query: 543 EMLGYYKEA 551
++ ++ A
Sbjct: 362 LLMNEFESA 370
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 23/129 (17%)
Query: 438 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI------ 491
+ +E ++ TK KL + A I KEKG +K ++++A+ Y + +
Sbjct: 250 FEKAKESWEMDTKEKL--------EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME 301
Query: 492 -----KLNGNNATY----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
K + + ++ + N A YL+ + +A C KA+ LD N K RRG A+
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361
Query: 543 EMLGYYKEA 551
++ ++ A
Sbjct: 362 LLMNEFESA 370
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 163 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 192
D G +R PSAFCGI G +P+ +S G+
Sbjct: 245 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 163 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 192
D G +R PSAFCGI G +P+ +S G+
Sbjct: 208 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 237
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 163 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 192
D G +R PSAFCGI G +P+ +S G+
Sbjct: 207 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 236
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 163 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 192
D G +R PSAFCGI G +P+ +S G+
Sbjct: 245 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 163 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 192
D G +R PSAFCGI G +P+ +S G+
Sbjct: 231 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 260
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 163 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 192
D G +R PSAFCGI G +P+ +S G+
Sbjct: 201 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 230
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 163 DTVGGVRVPSAFCGILGFRPSYGAVSHMGI 192
D G +R PSAFCGI G +P+ +S G+
Sbjct: 227 DIGGSIRFPSAFCGICGLKPTGNRLSKSGL 256
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
SAE GN YK + +AI +Y +A++L+ +A + N AY + G + +A
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 523 KAINLDKKN 531
KA+ LD ++
Sbjct: 62 KALELDPRS 70
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
N AY + G + +A KA+ LD ++ +A+ G A G Y EAIE
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 58
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYS---------------NRAAA 507
+E K GN +K + W AI YT+ ++ + G+ A N A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
L+ + A C +A+ +D N KA RR + L Y +A+
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT---------------EAIKL 493
K N+ + + + I KE+G +K+ ++ +A+ Y EA K
Sbjct: 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191
Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
+ N A +L+ +F A C KA+ LD N K RRG A
Sbjct: 192 QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEA 239
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
QN A LQ A + K+ N N +Q A + G + ++ Y +A++L
Sbjct: 24 QNPEAQLQ-----ALQDKIRANPQNSEQWALL----GEYYLWQNDYSNSLLAYRQALQLR 74
Query: 495 GNNATYYSNRAAA-YLESGSFLQAE--ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
G NA Y+ A Y ++ + A+ A KA+ LD + A + + M Y +A
Sbjct: 75 GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134
Query: 552 IE 553
IE
Sbjct: 135 IE 136
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS----------------NRA 505
QSA KE+GN+ +K + +AI Y EA+ + + N A
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG 554
Y ++ + +A +K + +DK NVKA + G A G+ +EA E
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT---------------EAIKL 493
K N+ + + + I KE+G +K+ ++ +A+ Y EA K
Sbjct: 132 AKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191
Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
+ N A +L+ +F A C KA+ LD N K RRG A
Sbjct: 192 QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239
>pdb|2Y9Y|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase)
Length = 624
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 282 SLKGFHKTNGELKNVMRLIQ-RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIE 340
+++G T + K + LIQ RYE ++ +++ +K PD+S ++ + EI +
Sbjct: 308 TIEGVDNTINQFKKLCSLIQSRYEIRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKN 367
Query: 341 NCKSIRNEM 349
KS ++E+
Sbjct: 368 AVKSEKDEL 376
>pdb|2Y9Z|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase) In Dna
Complex
Length = 624
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 282 SLKGFHKTNGELKNVMRLIQ-RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIE 340
+++G T + K + LIQ RYE ++ +++ +K PD+S ++ + EI +
Sbjct: 308 TIEGVDNTINQFKKLCSLIQSRYEIRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKN 367
Query: 341 NCKSIRNEM 349
KS ++E+
Sbjct: 368 AVKSEKDEL 376
>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
Length = 229
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 24/83 (28%)
Query: 224 FAAQRSPRQI--------IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL--- 272
+ QR P++I A++ FE+L A VQV+++ T+KL G Q L HE+
Sbjct: 17 YNKQRMPQEITNKILKEEFSAEENFEILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL 76
Query: 273 -------------GEYFDSKVPS 282
E F+ K+PS
Sbjct: 77 LKGSAVEAMFLRSAEIFNKKLPS 99
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----------------YSNRA 505
+A+ K GN +K+++ +A+ Y AI G++ + + N A
Sbjct: 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA 237
Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546
A ++ + +A C + ++KN KA RRG A+ LG
Sbjct: 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELG 278
>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
Length = 206
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 431 LDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEA 490
L T+ Y +E I + L K E+ K K +AY+D ++LK IS E
Sbjct: 37 LLTIMGKYVEFEEITKITLRYILKVRGEESKFDEELNKWKNLKAYEDTKYLKEISEIAEV 96
Query: 491 IKLNGNNATYYSNRAAAYLESGSFLQ 516
L+ + N +LE L+
Sbjct: 97 YALSNGSI----NEVKQHLERNGLLR 118
>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
Length = 201
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 431 LDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEA 490
L T+ Y +E I + L K E+ K K +AY+D ++LK IS E
Sbjct: 32 LLTIMGKYVEFEEITKITLRYILKVRGEESKFDEELNKWKNLKAYEDTKYLKEISEIAEV 91
Query: 491 IKLNGNNATYYSNRAAAYLESGSFLQ 516
L+ + N +LE L+
Sbjct: 92 YALSNGSI----NEVKQHLERNGLLR 113
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535
A+ YT AI++N A +SN A+ + +SG+ +A A A+ L AY
Sbjct: 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,509,410
Number of Sequences: 62578
Number of extensions: 555136
Number of successful extensions: 1569
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1412
Number of HSP's gapped (non-prelim): 131
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)