Query 008755
Match_columns 554
No_of_seqs 373 out of 3577
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 16:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02722 indole-3-acetamide am 100.0 6.6E-89 1.4E-93 693.0 38.7 405 30-439 3-420 (422)
2 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 4.3E-89 9.3E-94 699.4 35.7 419 8-443 4-469 (475)
3 PRK09201 amidase; Provisional 100.0 7.6E-87 1.6E-91 690.7 33.9 410 9-440 5-454 (465)
4 TIGR02715 amido_AtzE amidohydr 100.0 1.5E-86 3.2E-91 687.0 33.9 390 29-440 29-447 (452)
5 PRK05962 amidase; Validated 100.0 4E-86 8.6E-91 677.4 35.3 396 29-442 10-422 (424)
6 PRK08310 amidase; Provisional 100.0 1.1E-85 2.5E-90 667.8 38.4 388 31-440 4-393 (395)
7 PRK06102 hypothetical protein; 100.0 7.1E-86 1.5E-90 681.0 34.9 415 10-442 5-450 (452)
8 PRK07487 amidase; Provisional 100.0 7E-86 1.5E-90 684.2 34.5 416 7-441 4-457 (469)
9 PRK06169 putative amidase; Pro 100.0 6.4E-86 1.4E-90 684.8 33.2 415 6-441 2-456 (466)
10 PRK07056 amidase; Provisional 100.0 1.1E-85 2.5E-90 679.9 34.3 412 12-441 7-451 (454)
11 PRK07235 amidase; Provisional 100.0 3.3E-84 7.2E-89 672.8 39.7 400 29-440 53-500 (502)
12 PRK07486 amidase; Provisional 100.0 1.4E-84 3E-89 678.0 34.1 419 4-440 5-470 (484)
13 PRK06170 amidase; Provisional 100.0 1.5E-84 3.2E-89 679.5 34.0 418 4-441 5-482 (490)
14 PRK07042 amidase; Provisional 100.0 1.3E-84 2.8E-89 674.7 32.8 412 7-441 3-452 (464)
15 PRK12470 amidase; Provisional 100.0 2E-84 4.4E-89 671.2 31.3 412 7-440 5-451 (462)
16 PRK07488 indole acetimide hydr 100.0 6.3E-84 1.4E-88 670.9 34.7 413 6-440 6-464 (472)
17 TIGR00132 gatA glutamyl-tRNA(G 100.0 2.8E-84 6E-89 673.0 29.3 395 29-439 25-459 (460)
18 PRK06061 amidase; Provisional 100.0 1.1E-83 2.3E-88 669.5 32.3 415 3-441 10-468 (483)
19 PRK07869 amidase; Provisional 100.0 2E-83 4.3E-88 667.2 32.7 415 6-440 10-461 (468)
20 PRK06529 amidase; Provisional 100.0 3.1E-83 6.6E-88 667.5 33.5 411 12-440 5-477 (482)
21 PRK00012 gatA aspartyl/glutamy 100.0 2E-83 4.3E-88 666.4 30.9 394 29-438 21-459 (459)
22 PRK08186 allophanate hydrolase 100.0 5.3E-83 1.2E-87 673.5 32.7 411 11-441 7-448 (600)
23 PRK07139 amidase; Provisional 100.0 5.2E-82 1.1E-86 648.3 36.5 395 24-442 10-434 (439)
24 PRK08137 amidase; Provisional 100.0 2E-82 4.3E-87 663.9 32.8 404 8-440 3-482 (497)
25 TIGR02713 allophanate_hyd allo 100.0 8.7E-82 1.9E-86 657.1 32.4 367 55-441 29-411 (561)
26 PRK06828 amidase; Provisional 100.0 3.7E-78 8E-83 624.1 30.7 396 12-440 14-481 (491)
27 PF01425 Amidase: Amidase; In 100.0 1.3E-79 2.8E-84 643.7 18.4 384 29-431 12-441 (441)
28 PRK11910 amidase; Provisional 100.0 2.7E-76 5.8E-81 609.5 31.3 392 5-442 159-607 (615)
29 PRK06707 amidase; Provisional 100.0 1.2E-74 2.5E-79 600.5 29.7 386 8-441 68-528 (536)
30 PRK06565 amidase; Validated 100.0 2E-72 4.3E-77 576.6 25.6 429 9-442 5-555 (566)
31 KOG1211 Amidases [Translation, 100.0 2E-67 4.2E-72 522.8 21.4 399 29-439 46-493 (506)
32 KOG1212 Amidases [Translation, 100.0 3.6E-61 7.8E-66 482.4 25.2 417 8-443 52-553 (560)
33 KOG0553 TPR repeat-containing 99.5 4.5E-14 9.8E-19 131.0 10.2 94 460-553 77-170 (304)
34 KOG0547 Translocase of outer m 99.4 1.5E-12 3.2E-17 127.4 9.2 93 462-554 113-205 (606)
35 PRK15359 type III secretion sy 99.4 5.1E-12 1.1E-16 110.0 11.8 87 467-553 27-113 (144)
36 PRK15363 pathogenicity island 99.4 7.4E-12 1.6E-16 107.0 12.2 93 461-553 32-124 (157)
37 KOG0548 Molecular co-chaperone 99.3 1.1E-11 2.4E-16 123.1 13.6 117 428-553 331-447 (539)
38 PF13414 TPR_11: TPR repeat; P 99.3 5.3E-12 1.1E-16 95.1 7.9 67 463-529 2-69 (69)
39 PRK10370 formate-dependent nit 99.3 1.8E-11 3.9E-16 112.4 11.5 101 453-553 62-165 (198)
40 PRK15359 type III secretion sy 99.3 4.6E-11 9.9E-16 104.0 10.8 95 452-546 46-140 (144)
41 PRK11189 lipoprotein NlpI; Pro 99.2 1E-10 2.2E-15 115.1 13.9 93 461-553 61-153 (296)
42 TIGR02552 LcrH_SycD type III s 99.2 7.9E-11 1.7E-15 101.7 11.5 97 457-553 10-106 (135)
43 PLN03088 SGT1, suppressor of 99.2 1.6E-10 3.4E-15 116.4 12.6 95 451-545 23-117 (356)
44 KOG0553 TPR repeat-containing 99.2 1E-10 2.2E-15 108.8 9.3 108 442-549 93-200 (304)
45 COG3063 PilF Tfp pilus assembl 99.2 2.7E-10 5.9E-15 101.9 11.4 92 462-553 33-124 (250)
46 KOG4234 TPR repeat-containing 99.2 1.8E-10 4E-15 100.3 9.4 93 462-554 93-190 (271)
47 KOG4648 Uncharacterized conser 99.1 5.7E-11 1.2E-15 111.5 6.4 89 466-554 99-187 (536)
48 KOG4626 O-linked N-acetylgluco 99.1 1.1E-10 2.5E-15 117.2 7.9 95 459-553 281-375 (966)
49 KOG4626 O-linked N-acetylgluco 99.1 3E-10 6.4E-15 114.3 9.7 98 456-553 380-477 (966)
50 PF13432 TPR_16: Tetratricopep 99.1 3.7E-10 7.9E-15 83.8 7.5 65 468-532 1-65 (65)
51 TIGR00990 3a0801s09 mitochondr 99.1 7.3E-10 1.6E-14 120.8 12.0 91 462-553 125-215 (615)
52 PRK12370 invasion protein regu 99.0 1.6E-09 3.4E-14 116.2 11.7 91 461-551 335-425 (553)
53 KOG0543 FKBP-type peptidyl-pro 99.0 1.5E-09 3.2E-14 105.4 10.0 92 463-554 207-313 (397)
54 KOG0550 Molecular chaperone (D 99.0 6.8E-10 1.5E-14 107.0 7.1 96 459-554 244-343 (486)
55 PLN03088 SGT1, suppressor of 99.0 3.1E-09 6.7E-14 107.0 12.0 88 466-553 4-91 (356)
56 TIGR00990 3a0801s09 mitochondr 99.0 4.4E-09 9.5E-14 114.7 13.8 93 460-552 361-453 (615)
57 KOG1126 DNA-binding cell divis 99.0 1.5E-09 3.4E-14 110.7 9.1 100 454-553 479-578 (638)
58 KOG0624 dsRNA-activated protei 99.0 1.6E-09 3.5E-14 101.9 8.2 95 460-554 34-128 (504)
59 PF12895 Apc3: Anaphase-promot 99.0 1.2E-09 2.6E-14 85.7 6.3 77 476-553 1-79 (84)
60 KOG1125 TPR repeat-containing 99.0 1.5E-09 3.3E-14 109.1 8.3 92 462-553 428-519 (579)
61 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.2E-08 2.6E-13 85.7 12.0 90 464-553 2-97 (119)
62 PRK12370 invasion protein regu 98.9 6.3E-09 1.4E-13 111.6 12.8 101 453-553 284-393 (553)
63 KOG4642 Chaperone-dependent E3 98.9 1.7E-09 3.7E-14 97.0 6.3 92 462-553 8-99 (284)
64 KOG1126 DNA-binding cell divis 98.9 6.5E-10 1.4E-14 113.4 4.2 92 460-551 417-508 (638)
65 COG5010 TadD Flp pilus assembl 98.9 8.3E-09 1.8E-13 94.5 10.8 108 445-552 115-222 (257)
66 COG4235 Cytochrome c biogenesi 98.9 4.1E-09 9E-14 99.0 9.1 96 458-553 150-248 (287)
67 PRK11189 lipoprotein NlpI; Pro 98.9 7.8E-09 1.7E-13 101.7 11.6 101 452-553 86-186 (296)
68 KOG0551 Hsp90 co-chaperone CNS 98.9 4.7E-09 1E-13 98.6 9.1 92 462-553 79-174 (390)
69 PRK09782 bacteriophage N4 rece 98.9 8.5E-09 1.8E-13 115.6 12.9 99 454-553 600-698 (987)
70 cd00189 TPR Tetratricopeptide 98.9 1.3E-08 2.7E-13 80.8 10.4 88 466-553 2-89 (100)
71 KOG0548 Molecular co-chaperone 98.9 3.8E-09 8.2E-14 105.4 8.7 89 465-553 3-91 (539)
72 PRK02603 photosystem I assembl 98.9 1.9E-08 4.2E-13 90.6 12.6 91 459-549 30-123 (172)
73 CHL00033 ycf3 photosystem I as 98.9 1.8E-08 4E-13 90.4 12.3 92 461-552 32-133 (168)
74 PRK15179 Vi polysaccharide bio 98.9 2.1E-08 4.5E-13 108.3 13.0 97 456-552 112-208 (694)
75 PF13371 TPR_9: Tetratricopept 98.9 1.5E-08 3.2E-13 77.0 8.6 70 471-540 2-71 (73)
76 PRK15331 chaperone protein Sic 98.9 3.6E-08 7.7E-13 84.9 11.6 120 428-553 7-126 (165)
77 PRK15179 Vi polysaccharide bio 98.8 1E-08 2.3E-13 110.6 10.2 97 457-553 79-175 (694)
78 KOG4555 TPR repeat-containing 98.8 4.8E-08 1E-12 79.3 11.4 92 463-554 42-137 (175)
79 TIGR02521 type_IV_pilW type IV 98.8 3.9E-08 8.5E-13 92.6 13.0 103 451-553 52-156 (234)
80 PLN02789 farnesyltranstransfer 98.8 2.8E-08 6.1E-13 97.8 12.2 102 452-553 59-163 (320)
81 KOG0545 Aryl-hydrocarbon recep 98.8 1.5E-08 3.3E-13 91.2 9.1 104 451-554 165-286 (329)
82 PF14559 TPR_19: Tetratricopep 98.8 1.1E-08 2.4E-13 76.5 7.2 67 474-540 1-67 (68)
83 COG3063 PilF Tfp pilus assembl 98.8 3.2E-08 6.8E-13 88.9 10.3 99 453-551 58-158 (250)
84 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 2E-08 4.3E-13 100.0 9.8 73 456-528 67-142 (453)
85 COG5010 TadD Flp pilus assembl 98.8 7E-08 1.5E-12 88.5 12.2 96 458-553 94-189 (257)
86 KOG0547 Translocase of outer m 98.8 1.6E-08 3.5E-13 99.5 8.3 103 451-553 381-483 (606)
87 PRK15174 Vi polysaccharide exp 98.8 4.7E-08 1E-12 106.8 12.5 94 459-552 279-372 (656)
88 PRK15174 Vi polysaccharide exp 98.8 4.1E-08 8.9E-13 107.2 11.9 103 451-553 63-165 (656)
89 KOG1155 Anaphase-promoting com 98.8 5.2E-08 1.1E-12 95.5 10.9 107 447-553 381-487 (559)
90 TIGR02552 LcrH_SycD type III s 98.7 9.7E-08 2.1E-12 82.3 11.2 82 454-535 41-122 (135)
91 PF13414 TPR_11: TPR repeat; P 98.7 2.5E-08 5.4E-13 74.8 5.9 58 496-553 1-59 (69)
92 TIGR02521 type_IV_pilW type IV 98.7 1.8E-07 3.9E-12 88.1 13.1 99 455-553 90-190 (234)
93 PF12688 TPR_5: Tetratrico pep 98.7 2.1E-07 4.7E-12 77.2 11.7 89 465-553 2-96 (120)
94 PRK15363 pathogenicity island 98.7 1.2E-07 2.6E-12 81.3 10.4 76 455-530 60-135 (157)
95 TIGR03302 OM_YfiO outer membra 98.7 1E-07 2.3E-12 90.7 10.7 94 460-553 29-136 (235)
96 PF13429 TPR_15: Tetratricopep 98.7 1E-07 2.2E-12 93.4 10.2 93 461-553 143-269 (280)
97 PRK09782 bacteriophage N4 rece 98.6 7.5E-08 1.6E-12 108.1 9.4 102 452-553 631-732 (987)
98 COG4783 Putative Zn-dependent 98.6 1.9E-07 4.2E-12 92.7 10.5 101 452-552 328-428 (484)
99 KOG1155 Anaphase-promoting com 98.6 5.9E-07 1.3E-11 88.3 13.3 95 459-553 359-453 (559)
100 PRK10803 tol-pal system protei 98.6 6.2E-07 1.3E-11 85.7 12.7 71 464-534 180-253 (263)
101 TIGR03302 OM_YfiO outer membra 98.6 5.6E-07 1.2E-11 85.6 12.4 92 462-553 68-187 (235)
102 KOG0376 Serine-threonine phosp 98.6 2.2E-08 4.8E-13 99.2 2.7 91 464-554 4-94 (476)
103 KOG0543 FKBP-type peptidyl-pro 98.6 2.8E-07 6.2E-12 89.8 10.1 88 464-551 257-344 (397)
104 PRK11447 cellulose synthase su 98.6 4E-07 8.8E-12 106.3 12.9 103 451-553 372-516 (1157)
105 PF13424 TPR_12: Tetratricopep 98.6 2E-07 4.3E-12 71.8 7.0 68 461-528 2-76 (78)
106 PRK11447 cellulose synthase su 98.5 7.2E-07 1.6E-11 104.2 14.2 95 459-553 598-692 (1157)
107 PRK10370 formate-dependent nit 98.5 5.8E-07 1.2E-11 82.6 10.4 77 477-553 52-131 (198)
108 COG4785 NlpI Lipoprotein NlpI, 98.5 1.5E-07 3.2E-12 83.5 5.8 94 461-554 62-155 (297)
109 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.5E-06 3.3E-11 72.7 11.3 74 463-536 38-114 (119)
110 PLN02789 farnesyltranstransfer 98.5 2.2E-06 4.7E-11 84.6 13.6 89 457-545 99-189 (320)
111 PRK10049 pgaA outer membrane p 98.5 1.6E-06 3.6E-11 96.7 14.0 91 463-553 358-448 (765)
112 PRK10049 pgaA outer membrane p 98.5 1.2E-06 2.7E-11 97.7 12.9 102 451-553 70-171 (765)
113 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.6E-07 1E-11 90.4 8.0 61 493-553 70-133 (453)
114 PRK11788 tetratricopeptide rep 98.4 3.8E-06 8.2E-11 86.4 14.6 87 466-552 182-269 (389)
115 PF09976 TPR_21: Tetratricopep 98.4 2.6E-06 5.7E-11 74.3 10.9 91 462-553 46-139 (145)
116 PRK11788 tetratricopeptide rep 98.4 2.4E-06 5.2E-11 87.9 12.5 94 460-553 137-235 (389)
117 TIGR02917 PEP_TPR_lipo putativ 98.4 2.1E-06 4.5E-11 98.0 12.7 95 458-553 798-892 (899)
118 KOG2076 RNA polymerase III tra 98.4 4E-06 8.6E-11 88.9 12.9 110 444-553 153-262 (895)
119 PF13512 TPR_18: Tetratricopep 98.4 4.6E-06 9.9E-11 70.4 10.7 86 462-547 8-99 (142)
120 cd05804 StaR_like StaR_like; a 98.4 3.1E-06 6.7E-11 85.9 11.9 95 459-553 109-207 (355)
121 KOG2076 RNA polymerase III tra 98.4 2.3E-06 5E-11 90.7 10.9 93 461-553 411-504 (895)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 6.6E-06 1.4E-10 82.8 13.4 90 464-553 200-289 (395)
123 TIGR02917 PEP_TPR_lipo putativ 98.3 4.1E-06 8.9E-11 95.6 13.5 94 459-552 154-247 (899)
124 KOG4162 Predicted calmodulin-b 98.3 3.9E-06 8.5E-11 87.5 10.8 94 460-553 680-775 (799)
125 KOG4234 TPR repeat-containing 98.3 7.3E-06 1.6E-10 72.0 10.8 77 461-537 131-207 (271)
126 PRK02603 photosystem I assembl 98.3 1.1E-05 2.4E-10 72.6 12.6 81 463-546 71-165 (172)
127 PF13432 TPR_16: Tetratricopep 98.3 1.7E-06 3.6E-11 63.9 5.7 52 502-553 1-52 (65)
128 PF12895 Apc3: Anaphase-promot 98.3 2.1E-06 4.5E-11 67.1 6.2 61 463-524 24-84 (84)
129 KOG1173 Anaphase-promoting com 98.3 1.9E-06 4.2E-11 86.8 7.1 95 459-553 409-510 (611)
130 KOG1308 Hsp70-interacting prot 98.3 2.1E-07 4.6E-12 88.2 0.3 87 468-554 118-204 (377)
131 CHL00033 ycf3 photosystem I as 98.2 1.8E-05 4E-10 70.9 12.6 71 462-532 70-154 (168)
132 KOG1125 TPR repeat-containing 98.2 5.8E-06 1.2E-10 83.8 9.5 87 467-553 288-374 (579)
133 cd00189 TPR Tetratricopeptide 98.2 8.1E-06 1.7E-10 64.3 8.6 71 460-530 30-100 (100)
134 KOG0550 Molecular chaperone (D 98.2 1.3E-06 2.9E-11 84.7 4.6 94 459-552 44-137 (486)
135 PF13431 TPR_17: Tetratricopep 98.2 1.5E-06 3.3E-11 54.5 3.3 31 487-517 2-32 (34)
136 PF13431 TPR_17: Tetratricopep 98.2 2.1E-06 4.5E-11 53.9 3.7 34 520-553 1-34 (34)
137 COG4783 Putative Zn-dependent 98.2 1.5E-05 3.3E-10 79.4 11.5 93 461-553 303-395 (484)
138 COG2956 Predicted N-acetylgluc 98.2 3.7E-05 8E-10 72.7 13.3 94 459-552 175-269 (389)
139 PRK10866 outer membrane biogen 98.2 1.8E-05 3.9E-10 75.1 11.7 85 462-546 30-120 (243)
140 PF06552 TOM20_plant: Plant sp 98.1 4.2E-05 9E-10 66.8 11.8 80 460-539 21-121 (186)
141 PRK11906 transcriptional regul 98.1 3E-05 6.5E-10 77.8 12.4 93 460-552 291-392 (458)
142 PRK10803 tol-pal system protei 98.1 1.6E-05 3.4E-10 76.1 10.1 90 464-553 142-238 (263)
143 COG1729 Uncharacterized protei 98.1 3.5E-05 7.6E-10 72.0 11.6 86 467-552 144-235 (262)
144 cd05804 StaR_like StaR_like; a 98.1 4.1E-05 8.9E-10 77.7 13.4 90 464-553 43-169 (355)
145 PRK11906 transcriptional regul 98.1 1.7E-05 3.6E-10 79.6 9.9 94 459-552 333-427 (458)
146 PF13429 TPR_15: Tetratricopep 98.1 1.1E-05 2.5E-10 78.9 8.6 91 462-552 108-200 (280)
147 PF13525 YfiO: Outer membrane 98.1 4.2E-05 9.2E-10 70.8 11.9 84 462-545 3-92 (203)
148 KOG1128 Uncharacterized conser 98.1 9.4E-06 2E-10 84.3 7.5 87 465-551 486-572 (777)
149 KOG1840 Kinesin light chain [C 98.1 6.4E-05 1.4E-09 77.9 13.6 96 458-553 361-471 (508)
150 KOG1173 Anaphase-promoting com 98.0 5E-05 1.1E-09 76.9 12.1 82 462-543 453-534 (611)
151 PF13428 TPR_14: Tetratricopep 98.0 1.1E-05 2.5E-10 54.1 5.2 40 500-539 3-42 (44)
152 PRK14574 hmsH outer membrane p 98.0 2.7E-05 5.8E-10 86.2 11.0 84 469-552 73-156 (822)
153 PRK10153 DNA-binding transcrip 98.0 4.4E-05 9.6E-10 80.4 11.9 76 460-536 416-491 (517)
154 KOG3060 Uncharacterized conser 98.0 7.2E-05 1.6E-09 68.5 11.5 91 458-548 114-204 (289)
155 PF13428 TPR_14: Tetratricopep 98.0 1.4E-05 2.9E-10 53.7 5.3 42 465-506 2-43 (44)
156 PRK15331 chaperone protein Sic 98.0 3.8E-05 8.2E-10 66.4 9.2 82 459-542 66-147 (165)
157 PF00515 TPR_1: Tetratricopept 98.0 1.2E-05 2.5E-10 50.6 4.3 32 499-530 2-33 (34)
158 KOG0624 dsRNA-activated protei 98.0 5.9E-05 1.3E-09 71.8 10.7 88 466-553 157-244 (504)
159 KOG1840 Kinesin light chain [C 98.0 2.9E-05 6.3E-10 80.4 9.6 95 459-553 194-304 (508)
160 KOG2003 TPR repeat-containing 97.9 2.1E-05 4.5E-10 77.2 6.8 90 463-552 489-578 (840)
161 PF13512 TPR_18: Tetratricopep 97.9 0.00012 2.6E-09 62.0 10.3 74 461-534 44-135 (142)
162 PF09976 TPR_21: Tetratricopep 97.9 0.00023 4.9E-09 62.0 12.4 92 462-553 9-106 (145)
163 KOG1128 Uncharacterized conser 97.9 2.3E-05 4.9E-10 81.6 6.7 97 457-553 512-608 (777)
164 TIGR00540 hemY_coli hemY prote 97.9 8E-05 1.7E-09 77.0 10.9 93 461-553 115-208 (409)
165 PF00515 TPR_1: Tetratricopept 97.9 2.5E-05 5.4E-10 49.1 4.5 34 464-497 1-34 (34)
166 PF13371 TPR_9: Tetratricopept 97.9 2.3E-05 5E-10 59.2 5.0 50 505-554 2-51 (73)
167 PF13424 TPR_12: Tetratricopep 97.9 1.1E-05 2.3E-10 62.1 3.0 58 496-553 3-67 (78)
168 KOG2002 TPR-containing nuclear 97.9 7.7E-05 1.7E-09 80.0 10.2 86 461-546 304-390 (1018)
169 PF07719 TPR_2: Tetratricopept 97.9 3.9E-05 8.4E-10 48.2 5.0 31 500-530 3-33 (34)
170 PRK10153 DNA-binding transcrip 97.8 7E-05 1.5E-09 78.9 9.8 75 478-553 398-474 (517)
171 KOG1129 TPR repeat-containing 97.8 7.3E-05 1.6E-09 70.7 8.5 91 462-552 356-449 (478)
172 PF07719 TPR_2: Tetratricopept 97.8 4.6E-05 1E-09 47.8 5.1 34 464-497 1-34 (34)
173 PF14559 TPR_19: Tetratricopep 97.8 4.1E-05 8.9E-10 56.9 5.7 46 508-553 1-46 (68)
174 KOG2002 TPR-containing nuclear 97.8 0.00013 2.7E-09 78.5 11.2 101 453-553 259-363 (1018)
175 PRK14720 transcript cleavage f 97.8 7E-05 1.5E-09 82.2 9.5 95 456-553 57-170 (906)
176 KOG4340 Uncharacterized conser 97.8 7.3E-05 1.6E-09 69.9 7.9 124 428-553 108-262 (459)
177 PRK10747 putative protoheme IX 97.8 0.00014 2.9E-09 75.0 10.9 89 465-553 118-208 (398)
178 TIGR00540 hemY_coli hemY prote 97.8 0.00021 4.6E-09 73.9 12.0 91 462-552 261-355 (409)
179 PRK10747 putative protoheme IX 97.8 0.00032 6.9E-09 72.3 12.8 76 477-553 307-382 (398)
180 KOG3060 Uncharacterized conser 97.7 0.00081 1.7E-08 61.8 13.5 91 455-545 145-238 (289)
181 KOG2003 TPR repeat-containing 97.7 0.00031 6.8E-09 69.2 11.4 93 461-553 521-613 (840)
182 KOG1174 Anaphase-promoting com 97.7 0.00018 3.8E-09 70.3 9.5 95 458-552 226-354 (564)
183 PF06552 TOM20_plant: Plant sp 97.7 0.00011 2.3E-09 64.3 7.2 68 480-547 7-84 (186)
184 KOG1127 TPR repeat-containing 97.7 5.1E-05 1.1E-09 81.4 5.9 90 464-553 562-651 (1238)
185 PF12569 NARP1: NMDA receptor- 97.7 0.00087 1.9E-08 70.3 15.0 90 464-553 194-283 (517)
186 PF12688 TPR_5: Tetratrico pep 97.7 0.00095 2.1E-08 55.5 11.9 80 461-544 35-117 (120)
187 KOG1310 WD40 repeat protein [G 97.6 0.00013 2.9E-09 73.1 7.4 96 459-554 369-467 (758)
188 PRK14574 hmsH outer membrane p 97.6 0.00048 1E-08 76.4 12.3 95 458-552 410-504 (822)
189 KOG4648 Uncharacterized conser 97.6 0.00013 2.8E-09 69.5 6.3 88 451-538 118-205 (536)
190 KOG1156 N-terminal acetyltrans 97.6 0.00024 5.1E-09 73.3 8.6 92 462-553 73-164 (700)
191 KOG0376 Serine-threonine phosp 97.6 4.1E-05 8.9E-10 76.5 3.0 116 437-552 11-128 (476)
192 PF04733 Coatomer_E: Coatomer 97.6 0.00023 5E-09 69.4 8.1 89 462-550 163-253 (290)
193 COG2956 Predicted N-acetylgluc 97.6 0.0011 2.5E-08 62.9 12.1 92 462-553 139-235 (389)
194 KOG1129 TPR repeat-containing 97.6 0.00022 4.8E-09 67.5 7.4 134 417-553 280-416 (478)
195 COG4700 Uncharacterized protei 97.5 0.0014 3E-08 57.4 11.5 90 463-552 88-180 (251)
196 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00014 3E-09 65.0 5.1 87 447-533 82-168 (297)
197 KOG1156 N-terminal acetyltrans 97.5 0.00051 1.1E-08 70.9 9.6 96 457-552 34-129 (700)
198 KOG4555 TPR repeat-containing 97.5 0.0016 3.5E-08 53.5 10.1 83 451-533 64-150 (175)
199 KOG1174 Anaphase-promoting com 97.5 0.00094 2E-08 65.4 10.3 91 462-552 298-388 (564)
200 KOG0495 HAT repeat protein [RN 97.4 0.00092 2E-08 69.0 10.2 103 450-553 604-706 (913)
201 COG4235 Cytochrome c biogenesi 97.4 0.00086 1.9E-08 63.6 9.2 68 479-546 137-204 (287)
202 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.00055 1.2E-08 69.1 8.2 75 451-525 221-295 (395)
203 PRK10941 hypothetical protein; 97.4 0.0039 8.5E-08 59.7 13.5 79 464-542 181-259 (269)
204 KOG1127 TPR repeat-containing 97.4 0.00092 2E-08 72.1 10.0 79 467-545 5-84 (1238)
205 PF13525 YfiO: Outer membrane 97.4 0.0028 6.1E-08 58.6 12.2 93 460-552 38-161 (203)
206 PRK10866 outer membrane biogen 97.3 0.0054 1.2E-07 58.3 14.1 92 461-552 66-195 (243)
207 PF13181 TPR_8: Tetratricopept 97.3 0.0004 8.7E-09 43.4 4.2 30 500-529 3-32 (34)
208 KOG3824 Huntingtin interacting 97.3 0.00084 1.8E-08 63.2 7.6 80 462-541 114-193 (472)
209 PRK14720 transcript cleavage f 97.3 0.0011 2.5E-08 73.0 9.8 93 459-553 26-137 (906)
210 KOG4162 Predicted calmodulin-b 97.3 0.0019 4.1E-08 68.1 10.8 84 449-532 703-788 (799)
211 COG4105 ComL DNA uptake lipopr 97.3 0.0036 7.8E-08 58.2 11.4 83 462-544 32-120 (254)
212 PF13181 TPR_8: Tetratricopept 97.2 0.0007 1.5E-08 42.3 4.6 34 464-497 1-34 (34)
213 KOG4340 Uncharacterized conser 97.1 0.0015 3.2E-08 61.3 7.5 80 474-553 20-99 (459)
214 PF04733 Coatomer_E: Coatomer 97.1 0.0016 3.4E-08 63.6 8.0 113 423-535 159-273 (290)
215 PF12569 NARP1: NMDA receptor- 97.1 0.004 8.6E-08 65.5 11.1 83 463-545 3-85 (517)
216 PF03704 BTAD: Bacterial trans 97.1 0.0064 1.4E-07 52.9 10.8 84 469-552 11-116 (146)
217 COG1729 Uncharacterized protei 97.1 0.0065 1.4E-07 57.0 11.2 77 462-538 176-255 (262)
218 PF14938 SNAP: Soluble NSF att 97.1 0.0017 3.6E-08 63.5 7.7 91 462-553 73-176 (282)
219 KOG1130 Predicted G-alpha GTPa 97.1 0.00054 1.2E-08 66.9 4.1 91 463-553 194-296 (639)
220 KOG4642 Chaperone-dependent E3 97.1 0.00097 2.1E-08 60.7 5.3 75 453-527 33-107 (284)
221 COG3071 HemY Uncharacterized e 97.0 0.0057 1.2E-07 59.9 10.8 91 462-553 261-382 (400)
222 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0035 7.6E-08 43.5 6.8 43 499-541 2-44 (53)
223 KOG0545 Aryl-hydrocarbon recep 96.9 0.0055 1.2E-07 56.1 8.5 75 462-536 228-302 (329)
224 KOG1308 Hsp70-interacting prot 96.9 0.00053 1.1E-08 65.7 2.1 85 446-530 130-214 (377)
225 KOG2610 Uncharacterized conser 96.8 0.005 1.1E-07 58.8 7.9 94 460-553 133-230 (491)
226 KOG2796 Uncharacterized conser 96.8 0.0037 8.1E-08 57.8 6.8 71 461-531 249-319 (366)
227 PF12968 DUF3856: Domain of Un 96.8 0.035 7.5E-07 45.0 11.3 84 470-553 15-121 (144)
228 PF14938 SNAP: Soluble NSF att 96.8 0.0078 1.7E-07 58.8 9.5 91 462-552 112-216 (282)
229 COG3118 Thioredoxin domain-con 96.7 0.019 4.1E-07 54.5 11.2 87 467-553 137-257 (304)
230 KOG0551 Hsp90 co-chaperone CNS 96.7 0.0061 1.3E-07 58.3 7.9 69 462-530 117-185 (390)
231 KOG2796 Uncharacterized conser 96.7 0.0055 1.2E-07 56.7 7.3 94 460-553 208-307 (366)
232 KOG1130 Predicted G-alpha GTPa 96.7 0.004 8.7E-08 61.0 6.8 88 465-552 236-335 (639)
233 PF03704 BTAD: Bacterial trans 96.7 0.013 2.7E-07 51.0 9.6 65 463-527 61-125 (146)
234 COG4700 Uncharacterized protei 96.7 0.044 9.5E-07 48.3 12.3 91 461-552 121-213 (251)
235 PF13174 TPR_6: Tetratricopept 96.7 0.0033 7.1E-08 38.8 4.1 31 500-530 2-32 (33)
236 KOG3785 Uncharacterized conser 96.6 0.0059 1.3E-07 58.8 6.9 77 462-541 57-133 (557)
237 PF13176 TPR_7: Tetratricopept 96.5 0.0048 1E-07 39.1 4.2 25 501-525 2-26 (36)
238 KOG2376 Signal recognition par 96.5 0.014 3.1E-07 60.0 9.3 95 455-553 37-131 (652)
239 smart00028 TPR Tetratricopepti 96.4 0.0047 1E-07 37.2 3.7 32 499-530 2-33 (34)
240 PF13176 TPR_7: Tetratricopept 96.4 0.0068 1.5E-07 38.4 4.3 28 466-493 1-28 (36)
241 KOG0495 HAT repeat protein [RN 96.3 0.043 9.3E-07 57.3 11.4 89 463-551 650-738 (913)
242 KOG3081 Vesicle coat complex C 96.3 0.12 2.5E-06 48.4 13.0 87 465-551 170-260 (299)
243 PF13174 TPR_6: Tetratricopept 96.2 0.009 2E-07 36.7 4.2 33 465-497 1-33 (33)
244 PF09613 HrpB1_HrpK: Bacterial 96.2 0.11 2.4E-06 45.0 12.1 83 465-547 11-93 (160)
245 PF10300 DUF3808: Protein of u 96.2 0.019 4.1E-07 60.2 8.5 91 457-548 260-356 (468)
246 PF14561 TPR_20: Tetratricopep 96.1 0.036 7.8E-07 43.5 7.9 65 483-547 7-73 (90)
247 KOG2053 Mitochondrial inherita 96.1 0.034 7.4E-07 60.0 10.1 93 457-550 36-128 (932)
248 COG4976 Predicted methyltransf 96.1 0.0084 1.8E-07 54.4 4.8 60 473-532 4-63 (287)
249 PF04781 DUF627: Protein of un 96.0 0.038 8.3E-07 44.5 7.5 83 470-552 2-98 (111)
250 KOG3081 Vesicle coat complex C 95.9 0.052 1.1E-06 50.6 9.2 110 425-534 167-278 (299)
251 KOG2376 Signal recognition par 95.9 0.027 5.9E-07 58.0 8.0 88 465-553 13-100 (652)
252 PLN03081 pentatricopeptide (PP 95.9 0.027 5.9E-07 62.7 8.9 89 463-553 461-549 (697)
253 smart00028 TPR Tetratricopepti 95.9 0.013 2.8E-07 35.2 3.7 33 465-497 2-34 (34)
254 PLN03077 Protein ECB2; Provisi 95.9 0.048 1E-06 62.4 10.8 89 463-553 624-712 (857)
255 PF14853 Fis1_TPR_C: Fis1 C-te 95.8 0.047 1E-06 37.9 6.5 41 465-505 2-42 (53)
256 PF04184 ST7: ST7 protein; In 95.8 0.034 7.4E-07 56.4 8.1 97 455-553 193-316 (539)
257 KOG3785 Uncharacterized conser 95.7 0.072 1.6E-06 51.6 9.5 82 464-545 151-232 (557)
258 PF10579 Rapsyn_N: Rapsyn N-te 95.7 0.1 2.2E-06 39.1 8.2 66 462-527 4-72 (80)
259 PF15015 NYD-SP12_N: Spermatog 95.7 0.052 1.1E-06 53.7 8.6 88 466-553 185-283 (569)
260 COG0457 NrfG FOG: TPR repeat [ 95.7 0.11 2.4E-06 47.6 11.1 88 466-553 131-223 (291)
261 COG2912 Uncharacterized conser 95.4 0.11 2.4E-06 49.0 9.5 77 465-541 182-258 (269)
262 PLN03218 maturation of RBCL 1; 95.4 0.16 3.5E-06 58.5 12.6 87 465-552 615-704 (1060)
263 PLN03218 maturation of RBCL 1; 95.3 0.17 3.8E-06 58.2 12.6 87 465-552 580-669 (1060)
264 COG0457 NrfG FOG: TPR repeat [ 95.3 0.24 5.2E-06 45.3 11.7 91 462-552 165-256 (291)
265 PLN03081 pentatricopeptide (PP 95.2 0.11 2.3E-06 58.0 10.5 90 462-552 288-380 (697)
266 KOG2471 TPR repeat-containing 95.2 0.028 6E-07 56.6 5.0 83 463-545 282-382 (696)
267 PF05843 Suf: Suppressor of fo 95.1 0.14 3E-06 49.9 9.6 105 447-551 18-126 (280)
268 KOG1941 Acetylcholine receptor 95.1 0.12 2.6E-06 50.3 8.7 89 465-553 123-227 (518)
269 PF13374 TPR_10: Tetratricopep 95.0 0.056 1.2E-06 35.1 4.5 29 499-527 3-31 (42)
270 KOG3364 Membrane protein invol 94.9 0.23 5E-06 41.4 8.8 79 464-542 32-115 (149)
271 KOG4814 Uncharacterized conser 94.7 0.46 1E-05 49.7 12.3 89 465-553 355-449 (872)
272 PF05843 Suf: Suppressor of fo 94.5 0.45 9.8E-06 46.3 11.6 87 466-552 3-90 (280)
273 PF10602 RPN7: 26S proteasome 94.5 2 4.4E-05 38.5 14.7 92 462-553 34-134 (177)
274 KOG1310 WD40 repeat protein [G 94.4 0.077 1.7E-06 54.0 5.9 87 444-530 388-477 (758)
275 PRK04841 transcriptional regul 94.3 0.33 7.1E-06 56.0 11.7 90 464-553 452-552 (903)
276 COG3071 HemY Uncharacterized e 94.3 0.51 1.1E-05 46.7 10.9 90 463-552 117-207 (400)
277 PF13374 TPR_10: Tetratricopep 94.3 0.11 2.4E-06 33.7 4.7 31 464-494 2-32 (42)
278 TIGR02561 HrpB1_HrpK type III 94.2 0.9 2E-05 38.8 10.9 75 473-547 19-93 (153)
279 KOG4507 Uncharacterized conser 94.0 0.23 4.9E-06 51.4 8.2 77 467-543 645-721 (886)
280 PRK04841 transcriptional regul 93.9 0.37 7.9E-06 55.6 11.2 90 464-553 531-633 (903)
281 PF14561 TPR_20: Tetratricopep 93.6 0.23 5E-06 38.9 6.1 65 457-521 15-81 (90)
282 PF12862 Apc5: Anaphase-promot 93.6 0.37 8.1E-06 38.2 7.3 58 472-529 6-72 (94)
283 PLN03077 Protein ECB2; Provisi 93.5 0.48 1E-05 54.2 11.0 91 462-553 552-646 (857)
284 KOG0546 HSP90 co-chaperone CPR 93.4 0.04 8.6E-07 53.5 1.6 87 467-553 225-330 (372)
285 KOG1915 Cell cycle control pro 93.0 0.73 1.6E-05 46.7 9.8 90 462-552 402-491 (677)
286 KOG4151 Myosin assembly protei 93.0 0.13 2.9E-06 55.0 5.0 92 463-554 52-149 (748)
287 KOG1585 Protein required for f 93.0 1.3 2.7E-05 41.2 10.5 65 463-527 30-100 (308)
288 KOG1915 Cell cycle control pro 93.0 0.67 1.4E-05 47.0 9.4 92 462-553 71-162 (677)
289 PF04184 ST7: ST7 protein; In 92.9 1.6 3.6E-05 44.7 12.2 79 464-542 259-340 (539)
290 COG4105 ComL DNA uptake lipopr 92.9 2.5 5.3E-05 39.8 12.4 50 503-552 172-224 (254)
291 PRK10941 hypothetical protein; 92.8 0.34 7.4E-06 46.5 7.1 55 500-554 183-237 (269)
292 PF10516 SHNi-TPR: SHNi-TPR; 92.8 0.18 3.8E-06 32.2 3.5 29 499-527 2-30 (38)
293 KOG1941 Acetylcholine receptor 92.7 0.61 1.3E-05 45.6 8.5 89 464-552 162-266 (518)
294 COG2976 Uncharacterized protei 92.7 1.1 2.4E-05 40.2 9.4 68 464-532 126-193 (207)
295 COG2976 Uncharacterized protei 92.7 1.1 2.4E-05 40.2 9.4 88 464-553 89-180 (207)
296 KOG1586 Protein required for f 92.6 2.7 5.8E-05 38.9 11.9 91 462-553 72-175 (288)
297 COG3914 Spy Predicted O-linked 92.4 0.71 1.5E-05 48.1 9.0 82 470-551 73-161 (620)
298 KOG2610 Uncharacterized conser 92.3 0.98 2.1E-05 43.8 9.2 96 458-553 169-268 (491)
299 KOG1585 Protein required for f 92.3 3.1 6.7E-05 38.7 12.0 88 464-551 71-169 (308)
300 PF10300 DUF3808: Protein of u 92.1 0.64 1.4E-05 48.9 8.6 78 476-553 245-326 (468)
301 PF12968 DUF3856: Domain of Un 91.7 4 8.6E-05 33.5 10.6 65 463-527 54-129 (144)
302 KOG2396 HAT (Half-A-TPR) repea 91.6 1.1 2.5E-05 45.7 9.3 75 462-536 103-178 (568)
303 PF07079 DUF1347: Protein of u 91.6 1.4 3E-05 44.6 9.6 81 463-545 461-541 (549)
304 KOG2053 Mitochondrial inherita 91.5 0.86 1.9E-05 49.7 8.8 80 473-552 18-97 (932)
305 PF07720 TPR_3: Tetratricopept 91.3 0.72 1.6E-05 29.1 4.9 30 500-529 3-34 (36)
306 PF09613 HrpB1_HrpK: Bacterial 91.3 0.92 2E-05 39.5 7.2 74 460-535 40-113 (160)
307 COG3898 Uncharacterized membra 91.2 4 8.6E-05 40.6 12.1 89 463-553 119-209 (531)
308 PF09986 DUF2225: Uncharacteri 91.0 6.2 0.00014 36.6 13.0 78 462-539 116-207 (214)
309 COG5191 Uncharacterized conser 90.9 0.39 8.5E-06 45.9 5.0 76 461-536 104-180 (435)
310 COG3629 DnrI DNA-binding trans 90.9 1.4 3E-05 42.3 8.8 65 463-527 152-216 (280)
311 KOG0530 Protein farnesyltransf 90.9 4.3 9.4E-05 38.2 11.5 97 456-552 69-167 (318)
312 COG3118 Thioredoxin domain-con 90.5 3 6.5E-05 40.0 10.4 93 454-546 158-286 (304)
313 PF10516 SHNi-TPR: SHNi-TPR; 90.5 0.49 1.1E-05 30.2 3.6 30 465-494 2-31 (38)
314 PF10373 EST1_DNA_bind: Est1 D 90.2 1 2.2E-05 43.6 7.7 62 483-544 1-62 (278)
315 KOG0530 Protein farnesyltransf 90.2 1.5 3.3E-05 41.0 8.0 76 474-549 53-129 (318)
316 PF07720 TPR_3: Tetratricopept 89.6 1.3 2.8E-05 27.9 5.0 33 465-497 2-36 (36)
317 KOG2471 TPR repeat-containing 89.6 0.99 2.1E-05 45.9 6.8 92 462-553 238-356 (696)
318 KOG4507 Uncharacterized conser 89.4 0.31 6.7E-06 50.4 3.2 83 471-553 614-697 (886)
319 PF11207 DUF2989: Protein of u 89.4 1.6 3.4E-05 39.6 7.3 57 462-519 139-199 (203)
320 KOG0546 HSP90 co-chaperone CPR 89.0 0.25 5.4E-06 48.1 2.2 77 465-541 276-352 (372)
321 PF08424 NRDE-2: NRDE-2, neces 88.3 3.4 7.3E-05 41.1 9.8 82 456-537 11-104 (321)
322 PF07079 DUF1347: Protein of u 88.3 6.9 0.00015 39.8 11.6 48 505-553 469-516 (549)
323 PF02259 FAT: FAT domain; Int 88.3 4.9 0.00011 40.3 11.3 83 463-545 183-305 (352)
324 PF07721 TPR_4: Tetratricopept 88.0 0.68 1.5E-05 26.6 2.8 21 501-521 4-24 (26)
325 PF14863 Alkyl_sulf_dimr: Alky 88.0 1.8 3.8E-05 37.1 6.4 50 464-513 70-119 (141)
326 KOG1070 rRNA processing protei 88.0 6.8 0.00015 45.3 12.4 88 463-551 1496-1583(1710)
327 PF04910 Tcf25: Transcriptiona 86.8 6.2 0.00013 39.9 10.7 78 457-534 33-140 (360)
328 KOG3824 Huntingtin interacting 86.7 2.4 5.2E-05 40.6 7.0 58 479-551 112-169 (472)
329 PF13281 DUF4071: Domain of un 86.7 8.6 0.00019 38.7 11.3 85 462-547 177-274 (374)
330 PF07721 TPR_4: Tetratricopept 86.5 0.92 2E-05 26.1 2.8 25 465-489 2-26 (26)
331 PF11207 DUF2989: Protein of u 85.6 7.2 0.00016 35.4 9.2 71 479-551 121-197 (203)
332 KOG2300 Uncharacterized conser 85.4 14 0.00031 37.9 12.0 92 462-553 44-148 (629)
333 PF08631 SPO22: Meiosis protei 84.7 12 0.00027 36.2 11.4 90 461-550 32-139 (278)
334 TIGR02561 HrpB1_HrpK type III 83.2 4 8.7E-05 35.0 6.2 54 460-513 40-93 (153)
335 KOG1070 rRNA processing protei 82.5 13 0.00028 43.3 11.3 83 463-545 1563-1647(1710)
336 KOG0529 Protein geranylgeranyl 82.3 6.5 0.00014 39.5 8.2 91 454-544 99-195 (421)
337 KOG0529 Protein geranylgeranyl 81.9 5.8 0.00013 39.8 7.7 69 479-547 90-160 (421)
338 COG3947 Response regulator con 81.3 5.8 0.00013 37.9 7.1 61 465-525 280-340 (361)
339 cd02682 MIT_AAA_Arch MIT: doma 80.7 4.4 9.6E-05 30.3 4.9 32 462-493 4-35 (75)
340 KOG2047 mRNA splicing factor [ 80.4 33 0.00071 36.7 12.7 92 461-552 422-531 (835)
341 COG2912 Uncharacterized conser 80.1 3.4 7.3E-05 39.3 5.2 54 501-554 184-237 (269)
342 PF14863 Alkyl_sulf_dimr: Alky 79.9 6.7 0.00015 33.6 6.5 52 498-549 70-121 (141)
343 COG3898 Uncharacterized membra 79.9 25 0.00054 35.3 11.0 88 463-551 187-282 (531)
344 KOG1586 Protein required for f 79.8 19 0.0004 33.5 9.5 92 461-553 31-135 (288)
345 PF10255 Paf67: RNA polymerase 79.6 3.2 7E-05 42.2 5.2 55 471-526 129-192 (404)
346 PF09986 DUF2225: Uncharacteri 79.4 8 0.00017 35.9 7.5 80 474-553 87-186 (214)
347 COG4649 Uncharacterized protei 79.3 19 0.00041 31.8 9.0 79 465-544 133-212 (221)
348 smart00386 HAT HAT (Half-A-TPR 78.9 6.1 0.00013 23.3 4.6 29 478-506 1-29 (33)
349 PRK15180 Vi polysaccharide bio 78.7 25 0.00055 36.1 10.9 82 471-552 296-377 (831)
350 COG4455 ImpE Protein of avirul 78.6 6.6 0.00014 36.0 6.3 59 473-531 10-68 (273)
351 COG3629 DnrI DNA-binding trans 78.5 24 0.00051 34.1 10.4 72 480-553 137-208 (280)
352 cd02680 MIT_calpain7_2 MIT: do 78.4 4.3 9.3E-05 30.5 4.3 31 463-493 5-35 (75)
353 COG3914 Spy Predicted O-linked 78.0 13 0.00028 39.1 9.0 87 457-543 94-187 (620)
354 KOG3617 WD40 and TPR repeat-co 77.9 21 0.00046 39.2 10.6 88 465-552 859-987 (1416)
355 cd02682 MIT_AAA_Arch MIT: doma 77.7 10 0.00022 28.4 6.1 57 482-546 5-61 (75)
356 KOG1550 Extracellular protein 77.5 11 0.00024 40.7 8.9 60 479-542 308-370 (552)
357 PF08631 SPO22: Meiosis protei 77.4 18 0.00039 35.1 9.7 77 474-550 3-102 (278)
358 KOG1550 Extracellular protein 77.4 17 0.00036 39.2 10.3 85 462-550 323-415 (552)
359 PF10579 Rapsyn_N: Rapsyn N-te 77.2 10 0.00023 28.6 5.9 53 501-553 9-64 (80)
360 KOG1914 mRNA cleavage and poly 77.0 9 0.00019 39.9 7.4 72 455-527 11-82 (656)
361 COG0790 FOG: TPR repeat, SEL1 77.0 18 0.00039 35.2 9.7 54 482-539 173-230 (292)
362 PF02259 FAT: FAT domain; Int 76.5 14 0.00029 37.1 8.9 70 461-530 249-341 (352)
363 cd02681 MIT_calpain7_1 MIT: do 75.8 5.6 0.00012 29.9 4.3 32 462-493 4-35 (76)
364 PF07219 HemY_N: HemY protein 75.3 16 0.00034 29.7 7.3 52 462-513 57-108 (108)
365 PF04212 MIT: MIT (microtubule 74.7 6.8 0.00015 28.8 4.6 31 463-493 4-34 (69)
366 PF04212 MIT: MIT (microtubule 74.3 8.5 0.00018 28.2 5.0 33 480-527 2-34 (69)
367 PRK15490 Vi polysaccharide bio 74.2 26 0.00057 37.4 10.3 94 427-522 5-98 (578)
368 cd02679 MIT_spastin MIT: domai 74.1 6.2 0.00013 30.0 4.2 30 464-493 8-37 (79)
369 PF11817 Foie-gras_1: Foie gra 73.7 19 0.00042 34.2 8.6 63 463-525 177-245 (247)
370 TIGR03504 FimV_Cterm FimV C-te 73.3 6.8 0.00015 25.9 3.8 26 502-527 3-28 (44)
371 COG0790 FOG: TPR repeat, SEL1 72.1 40 0.00087 32.7 10.8 74 463-539 186-263 (292)
372 PF13281 DUF4071: Domain of un 71.9 61 0.0013 32.8 11.8 83 463-545 140-230 (374)
373 KOG3364 Membrane protein invol 71.2 17 0.00037 30.7 6.4 43 462-504 69-111 (149)
374 KOG0686 COP9 signalosome, subu 71.0 76 0.0016 32.2 11.8 90 464-553 150-250 (466)
375 PRK15180 Vi polysaccharide bio 70.4 8.6 0.00019 39.3 5.4 75 457-531 316-390 (831)
376 cd02681 MIT_calpain7_1 MIT: do 70.1 11 0.00025 28.3 4.8 32 481-527 4-35 (76)
377 COG3947 Response regulator con 70.0 14 0.00031 35.4 6.4 52 500-551 281-332 (361)
378 KOG2581 26S proteasome regulat 68.5 68 0.0015 32.5 10.9 68 457-524 240-313 (493)
379 KOG3617 WD40 and TPR repeat-co 68.4 23 0.00049 39.0 8.2 54 499-552 859-932 (1416)
380 PF04053 Coatomer_WDAD: Coatom 67.9 36 0.00079 35.4 9.7 58 462-527 345-402 (443)
381 cd02683 MIT_1 MIT: domain cont 67.4 13 0.00028 28.1 4.6 31 463-493 5-35 (77)
382 PF12862 Apc5: Anaphase-promot 67.3 17 0.00037 28.6 5.7 46 508-553 8-62 (94)
383 PF04910 Tcf25: Transcriptiona 66.9 29 0.00064 35.0 8.6 64 490-553 32-124 (360)
384 COG4455 ImpE Protein of avirul 66.6 11 0.00024 34.6 4.8 94 437-530 8-118 (273)
385 PF11817 Foie-gras_1: Foie gra 65.8 44 0.00095 31.7 9.2 54 499-552 179-238 (247)
386 PF11846 DUF3366: Domain of un 65.6 24 0.00051 32.0 7.1 48 481-529 128-175 (193)
387 PF10952 DUF2753: Protein of u 65.2 40 0.00088 27.9 7.2 65 466-530 3-86 (140)
388 COG4976 Predicted methyltransf 64.6 4.6 9.9E-05 37.3 2.0 45 453-497 18-62 (287)
389 cd02680 MIT_calpain7_2 MIT: do 64.2 14 0.00031 27.7 4.3 34 479-527 2-35 (75)
390 PRK13184 pknD serine/threonine 64.2 33 0.00072 39.2 9.1 71 463-534 511-588 (932)
391 cd02684 MIT_2 MIT: domain cont 64.1 14 0.00031 27.7 4.4 31 463-493 5-35 (75)
392 smart00386 HAT HAT (Half-A-TPR 63.9 18 0.00039 21.1 4.2 29 512-540 1-29 (33)
393 PF13041 PPR_2: PPR repeat fam 63.6 37 0.0008 22.7 6.1 29 499-527 4-32 (50)
394 PF12854 PPR_1: PPR repeat 62.5 19 0.0004 22.1 4.0 26 498-523 7-32 (34)
395 cd02678 MIT_VPS4 MIT: domain c 62.2 17 0.00037 27.2 4.5 31 463-493 5-35 (75)
396 cd02677 MIT_SNX15 MIT: domain 62.0 12 0.00026 28.1 3.6 31 463-493 5-35 (75)
397 PF09205 DUF1955: Domain of un 62.0 55 0.0012 27.7 7.6 61 467-527 88-149 (161)
398 cd02678 MIT_VPS4 MIT: domain c 61.9 20 0.00042 26.9 4.8 14 481-494 4-17 (75)
399 PF04781 DUF627: Protein of un 61.1 17 0.00036 29.6 4.4 49 480-528 60-108 (111)
400 KOG2300 Uncharacterized conser 60.6 67 0.0014 33.3 9.4 89 462-553 365-466 (629)
401 PF08424 NRDE-2: NRDE-2, neces 60.4 1.8E+02 0.0039 28.9 12.7 100 454-553 55-175 (321)
402 smart00745 MIT Microtubule Int 59.9 22 0.00047 26.6 4.8 31 463-493 7-37 (77)
403 PF15015 NYD-SP12_N: Spermatog 59.4 21 0.00047 36.0 5.7 62 465-526 229-290 (569)
404 PF12854 PPR_1: PPR repeat 59.1 21 0.00046 21.8 3.8 27 463-489 6-32 (34)
405 PF10345 Cohesin_load: Cohesin 58.9 2.8E+02 0.006 30.4 15.1 91 461-552 56-159 (608)
406 KOG2041 WD40 repeat protein [G 58.9 70 0.0015 34.7 9.5 80 462-553 794-873 (1189)
407 COG2909 MalT ATP-dependent tra 58.8 92 0.002 34.9 10.8 88 465-552 416-517 (894)
408 PF06957 COPI_C: Coatomer (COP 58.8 32 0.00069 35.3 7.1 27 509-535 311-337 (422)
409 PF10255 Paf67: RNA polymerase 58.5 12 0.00025 38.3 3.9 50 503-553 127-185 (404)
410 PRK13184 pknD serine/threonine 58.2 37 0.00081 38.8 8.1 83 470-553 481-573 (932)
411 KOG1464 COP9 signalosome, subu 58.0 32 0.00068 32.7 6.3 53 475-527 38-94 (440)
412 cd02679 MIT_spastin MIT: domai 57.9 22 0.00048 27.0 4.4 19 478-496 3-21 (79)
413 PF01535 PPR: PPR repeat; Int 57.8 18 0.00039 20.9 3.3 26 501-526 3-28 (31)
414 PF01239 PPTA: Protein prenylt 57.6 38 0.00081 20.1 4.7 25 484-508 3-27 (31)
415 KOG2396 HAT (Half-A-TPR) repea 57.4 72 0.0016 33.2 9.1 66 482-547 89-154 (568)
416 cd02684 MIT_2 MIT: domain cont 57.4 28 0.0006 26.2 4.9 15 480-494 3-17 (75)
417 COG4649 Uncharacterized protei 57.4 1.4E+02 0.0031 26.6 9.8 90 464-553 94-188 (221)
418 TIGR03504 FimV_Cterm FimV C-te 56.5 22 0.00048 23.5 3.7 25 468-492 3-27 (44)
419 COG2909 MalT ATP-dependent tra 56.5 1.4E+02 0.003 33.5 11.7 85 463-547 457-552 (894)
420 PF09670 Cas_Cas02710: CRISPR- 55.5 89 0.0019 31.9 9.8 58 469-526 136-197 (379)
421 KOG2422 Uncharacterized conser 55.4 1.3E+02 0.0028 32.1 10.6 82 456-537 276-382 (665)
422 cd02656 MIT MIT: domain contai 55.3 30 0.00064 25.8 4.8 30 464-493 6-35 (75)
423 cd02683 MIT_1 MIT: domain cont 54.5 42 0.00091 25.3 5.5 15 480-494 3-17 (77)
424 PF01239 PPTA: Protein prenylt 54.2 44 0.00095 19.8 4.6 29 517-545 2-30 (31)
425 cd02677 MIT_SNX15 MIT: domain 53.0 30 0.00065 26.0 4.4 14 481-494 4-17 (75)
426 KOG0985 Vesicle coat protein c 52.3 78 0.0017 36.1 8.9 61 462-527 1102-1162(1666)
427 KOG1839 Uncharacterized protei 52.1 1.1E+02 0.0025 35.7 10.5 97 457-553 1008-1120(1236)
428 KOG2114 Vacuolar assembly/sort 51.5 86 0.0019 34.8 9.0 32 462-493 366-397 (933)
429 KOG3807 Predicted membrane pro 51.5 1.1E+02 0.0025 30.0 9.0 87 454-553 208-296 (556)
430 TIGR00756 PPR pentatricopeptid 50.8 39 0.00084 19.9 4.2 26 501-526 3-28 (35)
431 PRK15490 Vi polysaccharide bio 49.3 90 0.0019 33.5 8.8 79 471-551 15-93 (578)
432 PF13041 PPR_2: PPR repeat fam 48.7 78 0.0017 21.0 5.9 30 464-493 3-32 (50)
433 smart00671 SEL1 Sel1-like repe 48.0 35 0.00076 20.6 3.6 14 479-492 20-33 (36)
434 PF05053 Menin: Menin; InterP 47.8 98 0.0021 32.8 8.5 88 426-526 252-346 (618)
435 PF10345 Cohesin_load: Cohesin 47.6 1.3E+02 0.0027 33.0 10.1 88 466-553 303-425 (608)
436 PF13812 PPR_3: Pentatricopept 47.4 52 0.0011 19.4 4.3 27 500-526 3-29 (34)
437 KOG3616 Selective LIM binding 47.3 58 0.0013 35.5 6.9 79 465-553 766-845 (1636)
438 KOG1914 mRNA cleavage and poly 46.2 64 0.0014 33.9 6.8 63 488-551 10-72 (656)
439 KOG2047 mRNA splicing factor [ 45.9 1.1E+02 0.0024 33.0 8.5 99 430-530 479-582 (835)
440 KOG1839 Uncharacterized protei 45.2 48 0.001 38.5 6.4 96 458-553 967-1078(1236)
441 KOG0276 Vesicle coat complex C 45.1 1.1E+02 0.0024 32.8 8.3 63 462-524 664-747 (794)
442 PF08238 Sel1: Sel1 repeat; I 44.6 52 0.0011 20.3 4.1 13 480-492 24-36 (39)
443 KOG4563 Cell cycle-regulated h 44.4 56 0.0012 32.5 5.9 59 462-520 39-105 (400)
444 smart00745 MIT Microtubule Int 44.1 47 0.001 24.8 4.4 17 479-495 4-20 (77)
445 smart00299 CLH Clathrin heavy 43.9 1.2E+02 0.0026 25.5 7.6 47 475-522 18-64 (140)
446 KOG0292 Vesicle coat complex C 43.8 1.6E+02 0.0034 33.2 9.5 75 464-538 991-1124(1202)
447 KOG4014 Uncharacterized conser 43.3 2.5E+02 0.0054 25.3 9.9 110 428-544 35-156 (248)
448 PF07219 HemY_N: HemY protein 42.3 1.3E+02 0.0028 24.3 7.0 45 503-547 64-108 (108)
449 COG4941 Predicted RNA polymera 42.2 1.6E+02 0.0035 29.1 8.5 73 469-541 334-408 (415)
450 PF10602 RPN7: 26S proteasome 41.0 2.6E+02 0.0057 24.9 10.3 69 460-528 69-143 (177)
451 KOG3783 Uncharacterized conser 40.6 2.2E+02 0.0048 30.1 9.7 71 461-531 446-524 (546)
452 TIGR02710 CRISPR-associated pr 40.3 1.3E+02 0.0027 30.6 7.9 53 470-522 136-195 (380)
453 COG2015 Alkyl sulfatase and re 40.0 68 0.0015 33.2 5.8 54 464-517 452-505 (655)
454 cd00280 TRFH Telomeric Repeat 38.6 69 0.0015 28.7 5.0 50 471-521 118-167 (200)
455 COG5107 RNA14 Pre-mRNA 3'-end 37.0 80 0.0017 32.5 5.8 71 457-527 35-105 (660)
456 KOG4151 Myosin assembly protei 36.8 81 0.0018 34.7 6.2 78 459-536 86-165 (748)
457 PF02064 MAS20: MAS20 protein 35.9 82 0.0018 26.2 4.8 32 467-498 66-97 (121)
458 COG5187 RPN7 26S proteasome re 35.8 2.2E+02 0.0047 27.7 8.1 60 468-527 79-144 (412)
459 KOG2581 26S proteasome regulat 35.2 1.7E+02 0.0037 29.8 7.6 64 467-530 212-279 (493)
460 cd02656 MIT MIT: domain contai 34.7 84 0.0018 23.3 4.5 15 480-494 3-17 (75)
461 PF12583 TPPII_N: Tripeptidyl 34.7 1.6E+02 0.0035 24.7 6.2 45 464-508 76-120 (139)
462 KOG2758 Translation initiation 34.6 1.9E+02 0.0041 28.4 7.6 67 460-527 125-196 (432)
463 KOG1258 mRNA processing protei 34.5 4.4E+02 0.0095 28.3 10.9 57 462-518 364-420 (577)
464 PF04053 Coatomer_WDAD: Coatom 34.2 1.6E+02 0.0034 30.8 7.8 47 475-526 329-375 (443)
465 KOG4563 Cell cycle-regulated h 34.1 74 0.0016 31.7 5.0 51 502-552 45-103 (400)
466 TIGR00985 3a0801s04tom mitocho 33.3 2.5E+02 0.0055 24.2 7.5 32 467-498 93-125 (148)
467 KOG0985 Vesicle coat protein c 32.2 2.3E+02 0.005 32.6 8.7 52 496-552 1102-1153(1666)
468 PHA02537 M terminase endonucle 31.9 1E+02 0.0022 28.9 5.3 31 500-530 171-210 (230)
469 COG5159 RPN6 26S proteasome re 31.6 1.6E+02 0.0035 28.5 6.5 86 468-553 7-146 (421)
470 KOG0890 Protein kinase of the 30.9 2.9E+02 0.0064 34.8 9.9 67 460-528 1666-1732(2382)
471 KOG4814 Uncharacterized conser 30.3 2.2E+02 0.0048 30.8 7.9 64 464-527 394-457 (872)
472 KOG2997 F-box protein FBX9 [Ge 29.8 68 0.0015 31.3 3.9 41 462-502 17-57 (366)
473 PF12583 TPPII_N: Tripeptidyl 29.3 1.1E+02 0.0024 25.7 4.5 35 510-544 88-122 (139)
474 PF14689 SPOB_a: Sensor_kinase 28.7 1.5E+02 0.0033 21.1 4.7 36 491-526 16-51 (62)
475 KOG1258 mRNA processing protei 28.3 7.8E+02 0.017 26.5 13.7 75 453-527 286-360 (577)
476 PF11846 DUF3366: Domain of un 28.1 1.2E+02 0.0027 27.2 5.3 39 514-553 127-165 (193)
477 COG5191 Uncharacterized conser 27.8 39 0.00084 32.9 1.9 52 452-503 129-181 (435)
478 KOG2758 Translation initiation 27.6 2.2E+02 0.0048 28.0 6.8 73 482-554 113-189 (432)
479 KOG3783 Uncharacterized conser 27.0 1.8E+02 0.004 30.7 6.6 82 460-542 263-348 (546)
480 KOG3540 Beta amyloid precursor 26.9 7.4E+02 0.016 25.9 11.8 60 475-534 323-384 (615)
481 PF00244 14-3-3: 14-3-3 protei 26.9 1.2E+02 0.0026 28.6 5.1 47 481-527 143-198 (236)
482 PF13226 DUF4034: Domain of un 26.9 3.5E+02 0.0075 26.2 8.1 65 483-547 62-148 (277)
483 COG2178 Predicted RNA-binding 25.7 5.1E+02 0.011 23.6 10.7 64 463-527 28-98 (204)
484 PF09797 NatB_MDM20: N-acetylt 25.1 1.7E+02 0.0036 29.7 6.1 45 479-523 198-242 (365)
485 cd00215 PTS_IIA_lac PTS_IIA, P 24.6 1.5E+02 0.0033 23.5 4.4 31 461-491 12-42 (97)
486 PF04010 DUF357: Protein of un 24.6 2.3E+02 0.005 21.2 5.2 29 460-488 31-59 (75)
487 KOG4056 Translocase of outer m 24.3 1.8E+02 0.004 24.6 4.9 34 467-500 84-117 (143)
488 KOG0276 Vesicle coat complex C 23.7 3.7E+02 0.0081 29.0 8.1 76 473-553 646-742 (794)
489 PRK09591 celC cellobiose phosp 23.2 1.6E+02 0.0036 23.6 4.4 31 461-491 17-47 (104)
490 KOG2997 F-box protein FBX9 [Ge 23.1 1.5E+02 0.0032 29.1 4.8 42 480-537 16-57 (366)
491 PF04190 DUF410: Protein of un 23.1 5.7E+02 0.012 24.4 9.0 66 462-527 88-170 (260)
492 TIGR00823 EIIA-LAC phosphotran 22.6 1.7E+02 0.0038 23.3 4.4 31 461-491 14-44 (99)
493 PF02255 PTS_IIA: PTS system, 22.3 1.8E+02 0.0039 23.0 4.5 30 462-491 12-41 (96)
494 KOG0292 Vesicle coat complex C 22.1 1.5E+02 0.0032 33.3 5.1 31 462-492 670-700 (1202)
495 PF15469 Sec5: Exocyst complex 21.8 4.4E+02 0.0096 23.4 7.6 21 474-494 96-116 (182)
496 PF04190 DUF410: Protein of un 21.8 7E+02 0.015 23.8 10.3 89 464-552 10-110 (260)
497 KOG0739 AAA+-type ATPase [Post 21.8 4.3E+02 0.0092 26.0 7.5 26 467-492 13-38 (439)
498 PF10938 YfdX: YfdX protein; 21.5 2.6E+02 0.0056 24.3 5.8 63 464-526 75-145 (155)
499 PHA02537 M terminase endonucle 20.7 1.4E+02 0.0031 27.9 4.1 36 462-497 167-211 (230)
500 TIGR03362 VI_chp_7 type VI sec 20.5 3.7E+02 0.008 26.4 7.2 50 475-525 110-159 (301)
No 1
>PLN02722 indole-3-acetamide amidohydrolase
Probab=100.00 E-value=6.6e-89 Score=693.01 Aligned_cols=405 Identities=59% Similarity=1.011 Sum_probs=335.2
Q ss_pred ccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeee
Q 008755 30 IKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIG 109 (554)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~g 109 (554)
.|+++|||++..+.+. ..+...|||+||||+|||+|+++|++||+||+.+.+.+.++.+||++|+|||++|||++|
T Consensus 3 ~~~~~~a~~~~~~~~~----~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilG 78 (422)
T PLN02722 3 TNPDYGAFMEKFVLSP----TSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVG 78 (422)
T ss_pred cCCCCCcceeeccccC----CCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEE
Confidence 5778999999864421 112467999999999999999999999999998875334567999999999999999999
Q ss_pred ecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCcccc
Q 008755 110 KTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSH 189 (554)
Q Consensus 110 kt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~ 189 (554)
|||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+
T Consensus 79 KTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~ 158 (422)
T PLN02722 79 KTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVST 158 (422)
T ss_pred EechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccc
Q 008755 190 MGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVL 267 (554)
Q Consensus 190 ~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv 267 (554)
.|++|+++++|++|||+|+++|+..+++++.+.+..+...+.+|.+..+.+......++++.+.++++++.+. |+.+
T Consensus 159 ~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v- 237 (422)
T PLN02722 159 VGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIV- 237 (422)
T ss_pred CCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCee-
Confidence 9999999999999999999999999999998877666666778888755442112234678888888888776 5554
Q ss_pred eeccCcccccccCCChhhHh-----------hhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCH
Q 008755 268 KHENLGEYFDSKVPSLKGFH-----------KTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISE 336 (554)
Q Consensus 268 ~~~~l~~~v~~~~p~~~~~~-----------~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~ 336 (554)
+...+...++...+.+..+. .....+...+..+..++....+..|+....+.++|.++.+++.|..++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~ 317 (422)
T PLN02722 238 KHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTE 317 (422)
T ss_pred eecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCH
Confidence 33333222222222221110 0011122344446666777778888877778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCc
Q 008755 337 TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPT 416 (554)
Q Consensus 337 ~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~ 416 (554)
.+|.++++.|.++++.+.++|+++|+||+||+|.+||+++........++..++.+|.++|++|+|+||||+|..+|+|+
T Consensus 318 ~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPv 397 (422)
T PLN02722 318 EKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPV 397 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCE
Confidence 99999999999999999999999999999999999998875423333444455678999999999999999999899999
Q ss_pred eeEEEeccCCcHHHHHHHHHHHH
Q 008755 417 SVSFIARHGGDRFLLDTVQNMYA 439 (554)
Q Consensus 417 g~~~~~~~~~d~~ll~~a~~le~ 439 (554)
|+|+++++++|..++++++++..
T Consensus 398 Glqivg~~~~D~~lL~~a~~l~~ 420 (422)
T PLN02722 398 SVSLLAKHGSDGFLLNLVESLYG 420 (422)
T ss_pred EEEEECCCCChHHHHHHHHHHHh
Confidence 99999999999999999998764
No 2
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-89 Score=699.41 Aligned_cols=419 Identities=26% Similarity=0.330 Sum_probs=338.0
Q ss_pred hHHHhhhhhhhhHHHHHH---------Hhh--hccCCcCceeeccccCCCC--CC-------CCCCCCCCCCCceeeecc
Q 008755 8 LWVLLGLGLAGILLMTKK---------LKK--NIKQDFGAFIEKLQLLPPP--QP-------LPPKAPHPLTGLSFAVSD 67 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~a~~~~~~~~~~~--~~-------~~~~~~~pL~Gvp~~vKD 67 (554)
+..+++..|++.+..++. ++| +.|+.+|||+....+.++. +| +++...|||+||||+|||
T Consensus 4 ~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKD 83 (475)
T COG0154 4 LTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKD 83 (475)
T ss_pred hhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEee
Confidence 456678888887655552 233 7789999999998886543 32 134567899999999999
Q ss_pred ccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhH
Q 008755 68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147 (554)
Q Consensus 68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGs 147 (554)
||+|+|++||+||+.+.+ +++.+||++|+||+++|||++||||||||+++.+|+|++||+|+||||++|+||||||||
T Consensus 84 n~~~~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGS 161 (475)
T COG0154 84 NIDTAGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGS 161 (475)
T ss_pred ccccCCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHH
Confidence 999999999999999987 478999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008755 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA- 226 (554)
Q Consensus 148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~- 226 (554)
|||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+|+|+..+++++.+.+..|
T Consensus 162 AaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~ 241 (475)
T COG0154 162 AAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDS 241 (475)
T ss_pred HHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998764432
Q ss_pred ---------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhh
Q 008755 227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT 289 (554)
Q Consensus 227 ---------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~ 289 (554)
..++.||++..+.... ...++++.++++++++.|. |+++++ ..+|.+.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga~v~~---------v~lp~~~~~~~- 310 (475)
T COG0154 242 PLPPPPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGAEVVE---------VSLPLLSDDYA- 310 (475)
T ss_pred ccccccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCCEEEe---------ccCCchhhhhh-
Confidence 1234567776665432 2346689999999999987 777642 22232211000
Q ss_pred hhhHHHHHH-HHHHHHHHhhhHH--HHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHHHHhhcCCCcEE
Q 008755 290 NGELKNVMR-LIQRYEFKNNHNE--WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM---RSAISSLLKDDGIL 363 (554)
Q Consensus 290 ~~~~~~~~~-~~~~~e~~~~~~~--~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~---~~~~~~~~~~~D~l 363 (554)
...+. .....+.+..... +...+...++++++++++.|..++..+|.++...|... ++.+.++|+++|+|
T Consensus 311 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~l 386 (475)
T COG0154 311 ----LAAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVL 386 (475)
T ss_pred ----hhHHHHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 00000 0000011111111 44555678999999999999999999999998888555 99999999999999
Q ss_pred EEcCCCCCCCCCCC-CC-CchHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755 364 VTPTTAYPPPKLGG-KE-MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (554)
Q Consensus 364 l~Pt~~~~ap~~~~-~~-~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~ 440 (554)
|+||+|.+||++++ .. ......+..+..||.++|++|+|+||||+|+. +|||+|+|+++++++|..|++++.++|+.
T Consensus 387 l~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~E~~ 466 (475)
T COG0154 387 LTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQA 466 (475)
T ss_pred EeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 99999999999997 21 11112222233589999999999999999998 59999999999999999999999999987
Q ss_pred HHH
Q 008755 441 LQE 443 (554)
Q Consensus 441 l~~ 443 (554)
...
T Consensus 467 ~~~ 469 (475)
T COG0154 467 LGW 469 (475)
T ss_pred hCC
Confidence 543
No 3
>PRK09201 amidase; Provisional
Probab=100.00 E-value=7.6e-87 Score=690.71 Aligned_cols=410 Identities=26% Similarity=0.354 Sum_probs=336.8
Q ss_pred HHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccc
Q 008755 9 WVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD 70 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~ 70 (554)
..+++.+|+++++.++ . ++| +.|+.+|||++...++++++|+ +++..|||+||||+|||+|+
T Consensus 5 ~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~ 84 (465)
T PRK09201 5 SSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFD 84 (465)
T ss_pred ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccc
Confidence 4457888888876654 2 233 6789999999988776655542 35678999999999999999
Q ss_pred cCCcccCCCChhhhhcCCCC-CCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHH
Q 008755 71 IEGYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV 149 (554)
Q Consensus 71 ~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaa 149 (554)
++|++||+||+.+.+ .++ ++||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||||||+
T Consensus 85 v~G~~tt~Gs~~~~~--~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAa 162 (465)
T PRK09201 85 VAGLTTLAGSKINRD--RPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAA 162 (465)
T ss_pred cCCcccCcCChhhcc--CCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence 999999999999876 355 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC--
Q 008755 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ-- 227 (554)
Q Consensus 150 aVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~-- 227 (554)
+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+.
T Consensus 163 aVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~ 242 (465)
T PRK09201 163 AVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQ 242 (465)
T ss_pred HHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886543221
Q ss_pred ---------------CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHcCCccceeccCcccccccCCChhhHhhhhhh
Q 008755 228 ---------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGE 292 (554)
Q Consensus 228 ---------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~ 292 (554)
.++.||++..+.+ ....++++.++++++++.|....+ ++ .|.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~~~---v~--------~~~~~~~------ 303 (465)
T PRK09201 243 ADRPAEPTAPLLDRGAEGLRIAVLGGYF--AQWADPEARAAVDRVAKALGATRE---VE--------LPEAARA------ 303 (465)
T ss_pred ccCCCcchhhhhccCCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHccCcee---ec--------CCchhHH------
Confidence 1335666664443 123578899999999988732111 11 1221111
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCC
Q 008755 293 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP 372 (554)
Q Consensus 293 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a 372 (554)
...+..+...|....+..++....+.++|.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+|
T Consensus 304 -~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a 382 (465)
T PRK09201 304 -RAAAFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSA 382 (465)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCC
Confidence 1111222334444555566655667899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC---c-hHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755 373 PKLGGKEM---L-SEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (554)
Q Consensus 373 p~~~~~~~---~-~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~ 440 (554)
|+++.... . ...+...+..||.+||++|+|+||||+|..+|+|+|+|+++++++|..+++++..+|+.
T Consensus 383 p~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~~ 454 (465)
T PRK09201 383 PLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQQ 454 (465)
T ss_pred CcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHhh
Confidence 99875321 1 11122334458999999999999999998899999999999999999999999999864
No 4
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=1.5e-86 Score=686.97 Aligned_cols=390 Identities=27% Similarity=0.390 Sum_probs=323.2
Q ss_pred hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCC-CCCHHHHHHH
Q 008755 29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVSTL 100 (554)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L 100 (554)
+.|+.+|||++...++++++|+ +++..|||+||||+|||+|+++|++||+||+.+.+ .++ .+||++|+||
T Consensus 29 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~p~~~dA~vV~rL 106 (452)
T TIGR02715 29 QADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINRD--LAPAKRDATLVQRL 106 (452)
T ss_pred HHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeCcCChhhcc--CCCCCCCHHHHHHH
Confidence 6789999999988776655442 35667999999999999999999999999999876 355 7999999999
Q ss_pred HhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccc
Q 008755 101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180 (554)
Q Consensus 101 ~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Gl 180 (554)
|+||||++||||||||+++.++.|++||+|+||||++|+||||||||||+||+|++++|+|||||||||+||+|||||||
T Consensus 107 ~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~cGv~Gl 186 (452)
T TIGR02715 107 SAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGL 186 (452)
T ss_pred HHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHCCCCceEEeeCCCCcchhhHHHhCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC-----------------CCCceEEEccchhhhc
Q 008755 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ-----------------RSPRQIIIADDCFELL 243 (554)
Q Consensus 181 kPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~-----------------~~~~~l~i~~~~~~~~ 243 (554)
|||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+. .++.||++..+.+.
T Consensus 187 KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p~~~~~~~~~~~~~~lrig~~~~~~~-- 264 (452)
T TIGR02715 187 KPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRPAEPTVPLLPAGISGLRIAVLGGWFQ-- 264 (452)
T ss_pred eCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhhcCCCCCEEEEECcccc--
Confidence 99999999999999999999999999999999999999886533221 23456776644431
Q ss_pred CCChHHHHHHHHHHHHHHcCCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHH
Q 008755 244 KIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD 323 (554)
Q Consensus 244 ~~~~~~~~~~~~~a~~~l~G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~ 323 (554)
...++++.++++++++.|....+ + ..|..... ...+..+...+....+..++....+.+.|.
T Consensus 265 ~~~~~~v~~a~~~a~~~L~~~~~---------v--~~~~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 326 (452)
T TIGR02715 265 QNADPEALAAVGRVAKALGATTI---------V--ELPDAERA-------RAAAFVITASEGGNLHLDALRTRPQDFDPA 326 (452)
T ss_pred CCCCHHHHHHHHHHHHhcCCeee---------e--cCCchHHH-------HHHHHHHHHHHHHHHHHHHhhhchhhcCHH
Confidence 23578999999999988732111 1 11222111 111122233344444555665566789999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCC----chHHHHHHHhhhhhccccc
Q 008755 324 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM----LSEDYQNRAFSLLSIASVS 399 (554)
Q Consensus 324 ~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~----~~~~~~~~~~~~t~~~nl~ 399 (554)
++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++.... ....+...+..||.+||++
T Consensus 327 ~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~ 406 (452)
T TIGR02715 327 TRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFA 406 (452)
T ss_pred HHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhc
Confidence 999999998899999999999999999999999999999999999999999875311 1111222344589999999
Q ss_pred CCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755 400 GCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (554)
Q Consensus 400 G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~ 440 (554)
|+|++|||+|..+|+|+|+|+++++++|..++++++.+|+.
T Consensus 407 G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~ 447 (452)
T TIGR02715 407 GLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ 447 (452)
T ss_pred CCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 99999999999899999999999999999999999999864
No 5
>PRK05962 amidase; Validated
Probab=100.00 E-value=4e-86 Score=677.42 Aligned_cols=396 Identities=24% Similarity=0.355 Sum_probs=327.4
Q ss_pred hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCC-CCCHHHHHHH
Q 008755 29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVSTL 100 (554)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L 100 (554)
++|+.+|||++...+.++++|+ +++..|||+||||+|||+|+|+|++||+||+.+.+ .++ ++||++|+||
T Consensus 10 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~~~dA~vV~rL 87 (424)
T PRK05962 10 ARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRD--APPAGADALIVQRL 87 (424)
T ss_pred hhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhc--CCCCcCChHHHHHH
Confidence 6789999999987776555432 35668999999999999999999999999999876 355 6899999999
Q ss_pred HhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccc
Q 008755 101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180 (554)
Q Consensus 101 ~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Gl 180 (554)
|++|||++||||||||+++.+++|++||+|+||||++|+||||||||||+||+|++++|+|||||||||+||+|||||||
T Consensus 88 ~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~Gl 167 (424)
T PRK05962 88 RNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGF 167 (424)
T ss_pred HHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhhHhhCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc----CCCCceEEEccchhhhcCCChHHHHHHHHH
Q 008755 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVIK 256 (554)
Q Consensus 181 kPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~ 256 (554)
|||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+ ..++.||++..+.+ ....++++.+++++
T Consensus 168 KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~ 245 (424)
T PRK05962 168 KPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEPDVAAAFEA 245 (424)
T ss_pred ecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988654322 22455777665443 22357889999999
Q ss_pred HHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcC
Q 008755 257 STEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEI 334 (554)
Q Consensus 257 a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 334 (554)
+++.|. |++|++ .++ |.+.+... .......+...+....+..+.......+++.++.++..+..+
T Consensus 246 a~~~L~~~G~~v~~-~~~--------~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 312 (424)
T PRK05962 246 SLAALEKAGARIAD-LAI--------DDLIARLA----EATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRRIKV 312 (424)
T ss_pred HHHHHHHCCCEEEE-ecc--------chHHHHHH----HHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhccCC
Confidence 998886 777643 111 22111000 000011223334444455566666678999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHH---HHHHhhhhhcccccCCceecccCCCC
Q 008755 335 SETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGYY 411 (554)
Q Consensus 335 s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~~~nl~G~PaisvP~g~~ 411 (554)
+..+|.++++.|..+++.|.++|+++|+||+||+|.++|+++........+ ...++.||.++|++|+|++|||++.
T Consensus 313 ~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~- 391 (424)
T PRK05962 313 PLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG- 391 (424)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC-
Confidence 999999999999999999999999999999999999999987532222212 2223458999999999999999984
Q ss_pred CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755 412 DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (554)
Q Consensus 412 ~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~ 442 (554)
+|+|+|+|+++++++|..++++++.+|+.+.
T Consensus 392 ~glPvGlqlvg~~~~D~~lL~~a~~le~~l~ 422 (424)
T PRK05962 392 MALPAGLMLTARNGSDRRLLAAAASVEKLLE 422 (424)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 6999999999999999999999999998764
No 6
>PRK08310 amidase; Provisional
Probab=100.00 E-value=1.1e-85 Score=667.85 Aligned_cols=388 Identities=39% Similarity=0.657 Sum_probs=323.9
Q ss_pred cCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeee
Q 008755 31 KQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGK 110 (554)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gk 110 (554)
++++|||+.+.+. ...++..|||+||||+|||+|+++|++||+||+.|.+...++.+||++|+|||++|||++||
T Consensus 4 ~~~~~a~~~~~~~-----~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GK 78 (395)
T PRK08310 4 HDPFNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGK 78 (395)
T ss_pred CCccccccccCCC-----CCCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEe
Confidence 4688999987542 12246789999999999999999999999999998653357789999999999999999999
Q ss_pred cCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccC
Q 008755 111 TVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHM 190 (554)
Q Consensus 111 t~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~ 190 (554)
||||||+++.+++|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.
T Consensus 79 Tn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~ 158 (395)
T PRK08310 79 TQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLE 158 (395)
T ss_pred ccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccce
Q 008755 191 GIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLK 268 (554)
Q Consensus 191 G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~ 268 (554)
|+.|+++++|++|||||+++|+..+++++.+.+..+...+.++.+..+.+ ...++++.++++++++.|. +.++++
T Consensus 159 G~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~g~vv~ 235 (395)
T PRK08310 159 GVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHLGPAKP 235 (395)
T ss_pred CCcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhCCceee
Confidence 99999999999999999999999999999876544433356777765433 2357889999999999885 224432
Q ss_pred eccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008755 269 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNE 348 (554)
Q Consensus 269 ~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~ 348 (554)
.++. ...+.. +...+..+...+.+..+..++......+.|.++.+++.+..++..+|.++.+.|+.
T Consensus 236 -~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~ 301 (395)
T PRK08310 236 -ASVP------PLSLDE-------WYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVEAARARRAA 301 (395)
T ss_pred -ecCC------cccHHH-------HHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 1110 001111 11222223334444556666666667799999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcH
Q 008755 349 MRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDR 428 (554)
Q Consensus 349 ~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~ 428 (554)
+++++.++|+++|+||+||++.+||+++........+......||.++|++|+|+++||+|..+|+|+|+|+++++++|.
T Consensus 302 ~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQivg~~~~D~ 381 (395)
T PRK08310 302 FARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDR 381 (395)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEEECCCCCHH
Confidence 99999999999999999999999999876433333333344568999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008755 429 FLLDTVQNMYAS 440 (554)
Q Consensus 429 ~ll~~a~~le~~ 440 (554)
.++++++++|+.
T Consensus 382 ~lL~~a~~le~~ 393 (395)
T PRK08310 382 SLLALAQTIAAA 393 (395)
T ss_pred HHHHHHHHHHhh
Confidence 999999999865
No 7
>PRK06102 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-86 Score=681.03 Aligned_cols=415 Identities=26% Similarity=0.362 Sum_probs=333.9
Q ss_pred HHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeecccccc
Q 008755 10 VLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDI 71 (554)
Q Consensus 10 ~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~ 71 (554)
.+++.+|+++++.++ . ++| +.|+ +|||++...++++++|+ +++..|||+||||+|||+|+|
T Consensus 5 ~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v 83 (452)
T PRK06102 5 AKSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDV 83 (452)
T ss_pred ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEecccc
Confidence 356777888766554 2 233 4565 89999988776655542 356789999999999999999
Q ss_pred CCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCC--CCCCCCCChhHHH
Q 008755 72 EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAP--SQMPGGSSSGAAV 149 (554)
Q Consensus 72 ~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~--~~~~GGSSgGsaa 149 (554)
+|++||+||+.+.+. .++.+||++|+|||++|||++||||||||+++.+|+|++||+|+||||+ +|+||||||||||
T Consensus 84 ~G~~tt~Gs~~~~~~-~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAa 162 (452)
T PRK06102 84 AGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAV 162 (452)
T ss_pred CCCccCcCChhhccC-CCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHH
Confidence 999999999998763 2347999999999999999999999999999999999999999999996 7999999999999
Q ss_pred HHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008755 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--- 226 (554)
Q Consensus 150 aVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~--- 226 (554)
+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+
T Consensus 163 aVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~ 242 (452)
T PRK06102 163 AVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVR 242 (452)
T ss_pred HHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987754322
Q ss_pred -CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHH
Q 008755 227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY 303 (554)
Q Consensus 227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~ 303 (554)
+.++.||++..+.+. ...++++.++++++++.|. |++|++ .+ .|.+.+... +...+..+...
T Consensus 243 ~~~~~~ri~~~~~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~~~~~~~~~~ 307 (452)
T PRK06102 243 RPLAGLRLVVPETVVF--DDAEPGVRAAFEAAVERLQAAGALVER-QA--------FPAFQEILD----LIARHGWLVTA 307 (452)
T ss_pred cCCCCCEEEEecchhc--ccCCHHHHHHHHHHHHHHHhCCCEEEe-cC--------CccHHHHHH----HHHHHHHHHHH
Confidence 223456666544331 3357899999999999886 776632 11 233222111 00111122234
Q ss_pred HHHhhhHHHHhh-hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCch
Q 008755 304 EFKNNHNEWIES-VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS 382 (554)
Q Consensus 304 e~~~~~~~~~~~-~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~ 382 (554)
|.+..+..++.. ....+.+.++.++..+..++..+|.++++.|..+++.+.++|+ +|+||+||+|.+||+++......
T Consensus 308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~ 386 (452)
T PRK06102 308 EAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADD 386 (452)
T ss_pred HHHHHHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCc
Confidence 444444454443 3457899999999999999999999999999999999999999 89999999999999987532111
Q ss_pred HHH---HHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755 383 EDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (554)
Q Consensus 383 ~~~---~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~ 442 (554)
..+ ...++.||.++|++|+|++|||+|+. +|+|+|+|+++++++|..++++++.+|+.+.
T Consensus 387 ~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l~ 450 (452)
T PRK06102 387 DLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVIR 450 (452)
T ss_pred hhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 111 12334589999999999999999986 8999999999999999999999999997663
No 8
>PRK07487 amidase; Provisional
Probab=100.00 E-value=7e-86 Score=684.21 Aligned_cols=416 Identities=22% Similarity=0.240 Sum_probs=333.9
Q ss_pred hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccc
Q 008755 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~ 68 (554)
+++.+|+.+|+++++.++ . ++| +.|+.+|||++...++++++|+ +++..|||+||||+|||+
T Consensus 4 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~ 83 (469)
T PRK07487 4 ELWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVN 83 (469)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEecc
Confidence 477889999999977654 2 233 6789999999987776655432 255679999999999999
Q ss_pred cccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHH
Q 008755 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (554)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsa 148 (554)
|+|+|++||+||+.+.+ +++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||||||
T Consensus 84 ~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsA 161 (469)
T PRK07487 84 VDQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAA 161 (469)
T ss_pred cccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Confidence 99999999999999876 5889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccc----c-CCCCCcccccccCHHHHHHHHHHhcCCC
Q 008755 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----I-STSLDTVGWFARDPKILRHVGHVLLQLP 223 (554)
Q Consensus 149 aaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p----~-~~s~d~~G~~ar~~~dl~~v~~~l~~~~ 223 (554)
||||+|++|+|+|||||||||+|||||||||||||+||||+.|+++ + ..++|++|||||+++|+..+++++.+.+
T Consensus 162 aAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d 241 (469)
T PRK07487 162 AAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPD 241 (469)
T ss_pred HHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999873 3 3478999999999999999999988654
Q ss_pred ccc----------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhh
Q 008755 224 FAA----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNG 291 (554)
Q Consensus 224 ~~~----------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~ 291 (554)
..+ ..++.||++..+.+. ...++++.++++++++.|. |+++++ . ...|.+.+.
T Consensus 242 ~~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~-------~~~~~~~~~----- 306 (469)
T PRK07487 242 PRDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGWTVEE-V-------DDTPPLREA----- 306 (469)
T ss_pred CCCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCCEEEe-c-------CCCCchHHH-----
Confidence 332 124467777654432 2357899999999999886 776632 1 012333221
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhh-CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCC
Q 008755 292 ELKNVMRLIQRYEFKNNHNEWIESV-KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY 370 (554)
Q Consensus 292 ~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~ 370 (554)
...+..+...+....+..++... .+.+.+.++..+..+..++..+|.++++.|..+++.|.++|+++|+||+||+|+
T Consensus 307 --~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~ 384 (469)
T PRK07487 307 --AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYPLLLMPVSAE 384 (469)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 11222223334444444444332 244666666666777889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHH--HHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755 371 PPPKLGGKEMLSEDYQN--RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (554)
Q Consensus 371 ~ap~~~~~~~~~~~~~~--~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l 441 (554)
+||+++........+.. ....+|.++|++|+|++|||+|+.+|+|+|+|+++++++|..++++++.+|+.+
T Consensus 385 ~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~~~ 457 (469)
T PRK07487 385 LPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEARG 457 (469)
T ss_pred CCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHHhh
Confidence 99998753222222211 111247789999999999999998999999999999999999999999998754
No 9
>PRK06169 putative amidase; Provisional
Probab=100.00 E-value=6.4e-86 Score=684.82 Aligned_cols=415 Identities=20% Similarity=0.240 Sum_probs=335.3
Q ss_pred chhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeecc
Q 008755 6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD 67 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD 67 (554)
++++.+++.+|+.+++.++ . ++| +.|+.+|||++...++++++|+ +++..||||||||+|||
T Consensus 2 ~~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD 81 (466)
T PRK06169 2 TDLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKD 81 (466)
T ss_pred cchhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEec
Confidence 3567778999998877654 2 233 6789999999987766555432 35567999999999999
Q ss_pred ccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhH
Q 008755 68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147 (554)
Q Consensus 68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGs 147 (554)
+|+++|++||+||+.+.+. .++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+||||||||
T Consensus 82 ~~~v~G~~tt~Gs~~~~~~-~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs 160 (466)
T PRK06169 82 IFLTRGWPTLRGSRAIDAD-GPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGA 160 (466)
T ss_pred ccccCCcccCccChhhccC-CCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHH
Confidence 9999999999999998753 345799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008755 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA- 226 (554)
Q Consensus 148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~- 226 (554)
|++||+|++|+|+|||||||||+||+||||||||||+||||+.|+.+++ ++|++|||+|+++|+..+++++.+.+..+
T Consensus 161 AaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~ 239 (466)
T PRK06169 161 AAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDW 239 (466)
T ss_pred HHHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999999999998886 89999999999999999999987643221
Q ss_pred ----------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhh
Q 008755 227 ----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHK 288 (554)
Q Consensus 227 ----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~ 288 (554)
..++.||++..+.+ ....++++.++++++++.|. |++|++ .+ +.+....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~- 306 (466)
T PRK06169 240 SALPPPTTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALGARVEE-VD---------PGFSDPV- 306 (466)
T ss_pred cccCCCCcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcCCEEEE-eC---------CCcchHH-
Confidence 12345666654332 12357899999999999986 776633 11 1111110
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCC
Q 008755 289 TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 368 (554)
Q Consensus 289 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~ 368 (554)
..+..+...+....+..+.....+.++|.++.+++.+..++..+|.++++.|..+++.|.++|+++|+||+||+
T Consensus 307 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~ 380 (466)
T PRK06169 307 ------EAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTL 380 (466)
T ss_pred ------HHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCC
Confidence 11111111222222333333445678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCch--HHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755 369 AYPPPKLGGKEMLS--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (554)
Q Consensus 369 ~~~ap~~~~~~~~~--~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~l 441 (554)
|.+||+++...... ......+..||.++|++|+|++|||+|+. +|+|+|+|+++++++|..|+++++.+|+..
T Consensus 381 ~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~~ 456 (466)
T PRK06169 381 PIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQAL 456 (466)
T ss_pred CCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhhc
Confidence 99999987531111 11112334589999999999999999986 899999999999999999999999998753
No 10
>PRK07056 amidase; Provisional
Probab=100.00 E-value=1.1e-85 Score=679.90 Aligned_cols=412 Identities=26% Similarity=0.353 Sum_probs=337.7
Q ss_pred hhhhhhhhHHHHH-----H----Hhh--hccC-CcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccC
Q 008755 12 LGLGLAGILLMTK-----K----LKK--NIKQ-DFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIE 72 (554)
Q Consensus 12 ~~~~~~~~~~~~~-----~----~~~--~~~~-~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~ 72 (554)
++.+|+.+++.++ . ++| +.|+ .+|||++...++++++|+ +++..||||||||+|||+|+++
T Consensus 7 ~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~ 86 (454)
T PRK07056 7 TLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVA 86 (454)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccC
Confidence 6777777766544 2 233 5576 499999987766555432 3566799999999999999999
Q ss_pred CcccCCCChhhhhcCCCC-CCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCC----CCCCCCCCCChhH
Q 008755 73 GYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA----APSQMPGGSSSGA 147 (554)
Q Consensus 73 g~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~----~~~~~~GGSSgGs 147 (554)
|++||+||+.+.+ .++ .+||++|+|||++|||++||||||||+++.+|+|++||+|+||| |++|+||||||||
T Consensus 87 G~~tt~Gs~~~~~--~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGs 164 (454)
T PRK07056 87 GQVTRAGSRVLAD--APPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGA 164 (454)
T ss_pred CCccCCCChhhcc--CCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHH
Confidence 9999999999876 356 68999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC
Q 008755 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ 227 (554)
Q Consensus 148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~ 227 (554)
||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.++.+.
T Consensus 165 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~ 244 (454)
T PRK07056 165 AVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVP 244 (454)
T ss_pred HHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655432
Q ss_pred ----CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHH
Q 008755 228 ----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ 301 (554)
Q Consensus 228 ----~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~ 301 (554)
.++.||++..+.+ ....++++.++++++++.|. |++|++ .+ .|.+..... +. ....+.
T Consensus 245 ~~~~~~~lrig~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~-~~~~~~ 308 (454)
T PRK07056 245 AARPLEGLRLAVPTTVV--LDGLDATVAAAFERALKRLSAAGAIIEE-IA--------FPELAELAE----IN-AKGGFS 308 (454)
T ss_pred ccccccCcEEEEcchhh--ccCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHHHH----HH-HhhhHH
Confidence 2456777765443 12357899999999999886 776632 22 222221111 00 001122
Q ss_pred HHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCc
Q 008755 302 RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML 381 (554)
Q Consensus 302 ~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~ 381 (554)
..+.+..+..++......+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++.....
T Consensus 309 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~ 388 (454)
T PRK07056 309 AAESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEAD 388 (454)
T ss_pred HHHHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCccccccc
Confidence 33444445556666667899999999999999999999999999999999999999999999999999999998753211
Q ss_pred hHHHHH---HHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755 382 SEDYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (554)
Q Consensus 382 ~~~~~~---~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l 441 (554)
...+.. .++.||.++|++|+|+||||+|..+|+|+|+|+++++++|..++++++.+|+.+
T Consensus 389 ~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l 451 (454)
T PRK07056 389 DAAFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVL 451 (454)
T ss_pred chhhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 222221 233479999999999999999988999999999999999999999999999765
No 11
>PRK07235 amidase; Provisional
Probab=100.00 E-value=3.3e-84 Score=672.83 Aligned_cols=400 Identities=22% Similarity=0.275 Sum_probs=320.2
Q ss_pred hccCCcCceeeccccCCCCCC------CCCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHh
Q 008755 29 NIKQDFGAFIEKLQLLPPPQP------LPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVE 102 (554)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~------~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~ 102 (554)
.+++..|++.+...+++...| .+++..|||+||||+|||||+++|++||+||+.+.+ +++.+||++|+||++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~--~~p~~DA~vV~rL~~ 130 (502)
T PRK07235 53 PVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG--FVPSFDATVVTRLLD 130 (502)
T ss_pred ccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC--CCCCCCHHHHHHHHH
Confidence 667888888877666554332 246778999999999999999999999999999976 588999999999999
Q ss_pred CCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccC
Q 008755 103 GGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRP 182 (554)
Q Consensus 103 aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkP 182 (554)
|||||+||||||||+++.+++|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+|||||||||
T Consensus 131 AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKP 210 (502)
T PRK07235 131 AGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKP 210 (502)
T ss_pred CCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCCCCcCccHHHcCcceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC------------------CCCceEEEccchhhhcC
Q 008755 183 SYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------------------RSPRQIIIADDCFELLK 244 (554)
Q Consensus 183 T~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~------------------~~~~~l~i~~~~~~~~~ 244 (554)
|+||||+.|++|+++++|++|||||+++|+..+++++.+.+..++ .++.||++..+.+.. .
T Consensus 211 T~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~ 289 (502)
T PRK07235 211 THGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRGVKGLKIGILREGFGL-P 289 (502)
T ss_pred CCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccCCcCCEEEEeccccCC-C
Confidence 999999999999999999999999999999999999887543221 234566665544321 2
Q ss_pred CChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhH-HH-HHH-HHH------------HHHHHh
Q 008755 245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL-KN-VMR-LIQ------------RYEFKN 307 (554)
Q Consensus 245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~-~~-~~~-~~~------------~~e~~~ 307 (554)
..++++.++++++++.|. |++|++ .++. ........+..+ .+ ... .+. ..+...
T Consensus 290 ~~~~~v~~a~~~a~~~L~~~G~~V~~-v~~p--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 360 (502)
T PRK07235 290 NSEPEVDEAVRAAAKRLEDLGATVEE-VSIP--------LHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLD 360 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC--------chhhHHHHHHHHHHHHHHHHhhhccccccccccccchhHHH
Confidence 247889999999999886 777633 2222 111000000000 00 000 000 001111
Q ss_pred hhHHHHhhhCCCCCHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchH
Q 008755 308 NHNEWIESVKPALDPDISAEIGEML----EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 383 (554)
Q Consensus 308 ~~~~~~~~~~~~~~p~~~~~~~~g~----~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~ 383 (554)
.+..+...+...+.+.++.++..|. .++..+|.++++.|..+++.|+++|+++|+||+||+|.+||+++....+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~ 440 (502)
T PRK07235 361 AFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASRE 440 (502)
T ss_pred HHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchH
Confidence 1222233345678999999988775 467889999999999999999999999999999999999999976433333
Q ss_pred HHHHH---HhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755 384 DYQNR---AFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (554)
Q Consensus 384 ~~~~~---~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~ 440 (554)
.+..+ ++.||.+||++|+|++|||+|+.+|+|+|+|+++++++|..+++++.++|+.
T Consensus 441 ~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A~~~E~~ 500 (502)
T PRK07235 441 EYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAAAAFEAS 500 (502)
T ss_pred HHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 33322 3347999999999999999999999999999999999999999999999864
No 12
>PRK07486 amidase; Provisional
Probab=100.00 E-value=1.4e-84 Score=678.00 Aligned_cols=419 Identities=22% Similarity=0.235 Sum_probs=331.7
Q ss_pred ccchhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccC-CCCCCC-------CCCCCCCCCCceee
Q 008755 4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLL-PPPQPL-------PPKAPHPLTGLSFA 64 (554)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~-~~~~~~-------~~~~~~pL~Gvp~~ 64 (554)
|--+++.+++.+|+.+++.++ . ++| +.|+.+|||++...++ ++++|+ ++...||||||||+
T Consensus 5 ~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~ 84 (484)
T PRK07486 5 PPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQA 84 (484)
T ss_pred ChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEE
Confidence 334667778999999977654 2 233 6789999999975532 233321 35667999999999
Q ss_pred eccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008755 65 VSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSS 144 (554)
Q Consensus 65 vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS 144 (554)
|||+|+++|++||+||+.+.+ +++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||
T Consensus 85 vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSS 162 (484)
T PRK07486 85 PKDLAPTKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSS 162 (484)
T ss_pred EecccccCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence 999999999999999999876 488999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCcc-ccCCCCCcccccccCHHHHHHHHHHhcCCC
Q 008755 145 SGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII-PISTSLDTVGWFARDPKILRHVGHVLLQLP 223 (554)
Q Consensus 145 gGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~-p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~ 223 (554)
|||||+||+|++++|+|||||||||+||+||||||||||+||||+.|.+ ++++++|++|||||+++|+..+++++.+.+
T Consensus 163 gGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d 242 (484)
T PRK07486 163 GGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYD 242 (484)
T ss_pred HHHHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999998755 789999999999999999999999987654
Q ss_pred ccc-----------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChh
Q 008755 224 FAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLK 284 (554)
Q Consensus 224 ~~~-----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~ 284 (554)
..+ ..++.||++..+++. ....++++.++++++++.|. |++|++ ..+. + ...
T Consensus 243 ~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~--~-----~~~ 313 (484)
T PRK07486 243 PRDPLSLAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELGCDVEA-ALPA--F-----PPE 313 (484)
T ss_pred CCCCccccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC--c-----chH
Confidence 322 123457776544331 11357889999999999886 776632 1110 0 011
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHhhhHHHHh--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcE
Q 008755 285 GFHKTNGELKNVMRLIQRYEFKNNHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI 362 (554)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ 362 (554)
. ..+.+..+...+........+. .....+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+
T Consensus 314 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ 386 (484)
T PRK07486 314 R-------LWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERYDF 386 (484)
T ss_pred H-------HHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 0 0111111111111111122221 134568899999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCC-----CchHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHH
Q 008755 363 LVTPTTAYPPPKLGGKE-----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQN 436 (554)
Q Consensus 363 ll~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~ 436 (554)
||+||+|.+||+++... .........+..+|.++|++|+|+|+||+|+. +|+|+|+|+++++++|..++++++.
T Consensus 387 ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a~~ 466 (484)
T PRK07486 387 LALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHA 466 (484)
T ss_pred EEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 99999999999876421 11111122334478899999999999999986 8999999999999999999999999
Q ss_pred HHHH
Q 008755 437 MYAS 440 (554)
Q Consensus 437 le~~ 440 (554)
+|+.
T Consensus 467 le~~ 470 (484)
T PRK07486 467 YEQA 470 (484)
T ss_pred HHhc
Confidence 9875
No 13
>PRK06170 amidase; Provisional
Probab=100.00 E-value=1.5e-84 Score=679.52 Aligned_cols=418 Identities=21% Similarity=0.269 Sum_probs=331.9
Q ss_pred ccchhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeee
Q 008755 4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAV 65 (554)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~v 65 (554)
-+.++..+++.+|+++++.++ . ++| +.|+.+|||++...++++++|+ ++ ..||||||||+|
T Consensus 5 ~~~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g-~~gpL~GvPv~V 83 (490)
T PRK06170 5 AADEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARG-ERGPLLGIPVTV 83 (490)
T ss_pred ccchhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcC-CCCCcCCceEEE
Confidence 345778889999999977665 2 233 6799999999988776655542 23 469999999999
Q ss_pred ccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008755 66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSS 145 (554)
Q Consensus 66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSg 145 (554)
||+|+|+|++||+||+.+.+ .++.+|+++|+|||++|||++||||||||+++.++.|++||+|+||||++|+||||||
T Consensus 84 KD~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSg 161 (490)
T PRK06170 84 KESFNVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSG 161 (490)
T ss_pred ecccccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChH
Confidence 99999999999999999886 4788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccc-----c--CCCCCcccccccCHHHHHHHHHH
Q 008755 146 GAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP-----I--STSLDTVGWFARDPKILRHVGHV 218 (554)
Q Consensus 146 GsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p-----~--~~s~d~~G~~ar~~~dl~~v~~~ 218 (554)
||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++| + +.++|++|||||+++|+..++++
T Consensus 162 GsAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~ 241 (490)
T PRK06170 162 GSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDV 241 (490)
T ss_pred HHHHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 4 34689999999999999999999
Q ss_pred hcCCCccc---------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCC
Q 008755 219 LLQLPFAA---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP 281 (554)
Q Consensus 219 l~~~~~~~---------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p 281 (554)
+.+.+..+ ..++.||++..+.+. ...++++.++++++++.|. |++|++. + ...|
T Consensus 242 l~g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~~-~------~~~~ 312 (490)
T PRK06170 242 MAGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHPL--LPTDAAVRAAIERLAAALADAGARVVRH-S------PLLP 312 (490)
T ss_pred HhCCCccccccccccCCCcccccccCCCEEEEECCcCC--CCCCHHHHHHHHHHHHHHHHCCCEEEEc-C------CCCC
Confidence 88754322 113456776654331 2357899999999999986 7776431 1 0112
Q ss_pred ChhhHhhhhhhHHHHHHHHHHHHHHhhh-HHHHhh------hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 008755 282 SLKGFHKTNGELKNVMRLIQRYEFKNNH-NEWIES------VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAIS 354 (554)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~------~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~ 354 (554)
.+.... ..+..+...+....+ ..+... ....+.+.++.++..+..++..+|.++++.|..+++.|.
T Consensus 313 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~ 385 (490)
T PRK06170 313 DLAESA-------RLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAAREELRAAWR 385 (490)
T ss_pred chHHHH-------HHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 222111 111111111111111 011111 123466777777888888999999999999999999999
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCCCCCc------h----HHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEec
Q 008755 355 SLLKDDGILVTPTTAYPPPKLGGKEML------S----EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIAR 423 (554)
Q Consensus 355 ~~~~~~D~ll~Pt~~~~ap~~~~~~~~------~----~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~ 423 (554)
++|+++|+||+||+|.+||+++..... . ..+. ..+.||.++|++|+|+||||+|+. +|+|+|+|++++
T Consensus 386 ~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlig~ 464 (490)
T PRK06170 386 RFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYW-DQLVWAGLATLPGLPATAIPIGLSATGLPVGVQIVGP 464 (490)
T ss_pred HHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchh-hhhhhcceecccCCCeEEEECCcCCCCCceeEEEecC
Confidence 999999999999999999998653110 0 0111 223589999999999999999986 899999999999
Q ss_pred cCCcHHHHHHHHHHHHHH
Q 008755 424 HGGDRFLLDTVQNMYASL 441 (554)
Q Consensus 424 ~~~d~~ll~~a~~le~~l 441 (554)
+++|..|+++++.+|+.+
T Consensus 465 ~~~D~~LL~~a~~lE~~~ 482 (490)
T PRK06170 465 ALEDRTPLRLAELLEEEF 482 (490)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999998754
No 14
>PRK07042 amidase; Provisional
Probab=100.00 E-value=1.3e-84 Score=674.67 Aligned_cols=412 Identities=17% Similarity=0.143 Sum_probs=331.6
Q ss_pred hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccc
Q 008755 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~ 68 (554)
+++.+++.+|+.+++.++ . ++| +.|+.+|||++...+.++++|+ +++..||||||||+|||+
T Consensus 3 ~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~ 82 (464)
T PRK07042 3 ALHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKEN 82 (464)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcc
Confidence 466778899988876654 2 233 6799999999987776655442 356789999999999999
Q ss_pred cccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHH
Q 008755 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (554)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsa 148 (554)
|+|+|++||+||+.+.+ +++.+||++|+|||++|||++||||||||+++..|+|++||+|+||||++|+|||||||||
T Consensus 83 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 160 (464)
T PRK07042 83 IATRGVPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAG 160 (464)
T ss_pred cccCCcccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHH
Confidence 99999999999999865 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC-
Q 008755 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ- 227 (554)
Q Consensus 149 aaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~- 227 (554)
|+||+|++++|+|||||||||+||+||||||||||+||||..|.. +.|++|||||+++|+..+++++.+.+..+.
T Consensus 161 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~ 236 (464)
T PRK07042 161 AAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGT 236 (464)
T ss_pred HHHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999999999999999998843 358999999999999999999876543221
Q ss_pred ---------------CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhh
Q 008755 228 ---------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN 290 (554)
Q Consensus 228 ---------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~ 290 (554)
.++.||++..+.+. ....++++.++++++++.|. |+++++. + .+....+
T Consensus 237 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~~-~--------~~~~~~~---- 302 (464)
T PRK07042 237 SLPPQDIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGAIVEPV-P--------PFLTRAM---- 302 (464)
T ss_pred ccCCCCcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEe-C--------CchhHHH----
Confidence 13456776544321 12357889999999999886 7776431 1 1111111
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCC
Q 008755 291 GELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY 370 (554)
Q Consensus 291 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~ 370 (554)
.+.+..+...+....+..+.....+.+.|.++.++..+..++..+|.+++..|..+++.|.++|+++|+||+||+|.
T Consensus 303 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~ 379 (464)
T PRK07042 303 ---LDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPV 379 (464)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 11111111123333344444555667889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCc-hHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755 371 PPPKLGGKEML-SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (554)
Q Consensus 371 ~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~l 441 (554)
+||+++..... ........+.||.+||++|+|+||||+|+. +|+|+|+|+++++++|..|+++++.+|+..
T Consensus 380 ~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~ 452 (464)
T PRK07042 380 PAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWR 452 (464)
T ss_pred CCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhc
Confidence 99988642211 111111223589999999999999999986 799999999999999999999999998764
No 15
>PRK12470 amidase; Provisional
Probab=100.00 E-value=2e-84 Score=671.23 Aligned_cols=412 Identities=22% Similarity=0.275 Sum_probs=326.2
Q ss_pred hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccc
Q 008755 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~ 68 (554)
+++.+++.+|+.+++.++ . ++| +.|+.+|||+....++++++|+ ++... ||+||||+|||+
T Consensus 5 ~~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~ 83 (462)
T PRK12470 5 DLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDD 83 (462)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecC
Confidence 467788999999976654 2 233 6789999999987776655442 24445 999999999999
Q ss_pred cccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHH
Q 008755 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (554)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsa 148 (554)
|+++|++||+||+.+ . +++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||||||
T Consensus 84 ~~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 160 (462)
T PRK12470 84 VDVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSA 160 (462)
T ss_pred cccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHH
Confidence 999999999999985 3 4788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008755 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (554)
Q Consensus 149 aaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-- 226 (554)
+|||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+|+|+..+++++.+.+..+
T Consensus 161 aAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~ 240 (462)
T PRK12470 161 AAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGE 240 (462)
T ss_pred HHHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887543211
Q ss_pred -------CCCCceEEEccchhh-hcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHH
Q 008755 227 -------QRSPRQIIIADDCFE-LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV 296 (554)
Q Consensus 227 -------~~~~~~l~i~~~~~~-~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~ 296 (554)
..++.||++..+.+. .....++++.++++++++.|. |++|++ .. |.+...... .+...
T Consensus 241 ~~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~~~--~~~~~ 308 (462)
T PRK12470 241 FVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVV-RD---------PDYPAATYA--NYLPR 308 (462)
T ss_pred hhhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCCEEEE-eC---------CCchhHHHH--HHHHH
Confidence 124457776544321 112357889999999999986 776632 11 111100000 00000
Q ss_pred HHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCC
Q 008755 297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376 (554)
Q Consensus 297 ~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~ 376 (554)
+ ....... .....+...+.+.++.++..|..++..+|.....++..+++.|.++|+++|+||+||+|.+||+++
T Consensus 309 ~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~ 382 (462)
T PRK12470 309 F-----FRGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIG 382 (462)
T ss_pred H-----HHHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCC
Confidence 0 0000000 011123456889999999999999998888555556699999999999999999999999999987
Q ss_pred CCCCc--hHHH--HHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755 377 GKEML--SEDY--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (554)
Q Consensus 377 ~~~~~--~~~~--~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~ 440 (554)
..... ...+ ...+..||.++|++|+|+||||+|+. +|+|+|+|+++++++|..|++++..+|+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~ 451 (462)
T PRK12470 383 AYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451 (462)
T ss_pred ccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence 53211 1111 12334589999999999999999987 79999999999999999999999999865
No 16
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=6.3e-84 Score=670.92 Aligned_cols=413 Identities=25% Similarity=0.343 Sum_probs=329.0
Q ss_pred chhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeecc
Q 008755 6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD 67 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD 67 (554)
.+++.+++.+|+.+++.++ . ++| +.+ .+|||++...++++++|+ .+...+ |+||||+|||
T Consensus 6 ~~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD 83 (472)
T PRK07488 6 PDVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKD 83 (472)
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEc
Confidence 4678889999999977655 2 233 334 699999988776655442 244456 9999999999
Q ss_pred ccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhH
Q 008755 68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147 (554)
Q Consensus 68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGs 147 (554)
+|+|+|++||+||+.+.+ +++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++++||||||||
T Consensus 84 ~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs 161 (472)
T PRK07488 84 NINTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGT 161 (472)
T ss_pred ccccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHH
Confidence 999999999999999886 478899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008755 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA- 226 (554)
Q Consensus 148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~- 226 (554)
||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+
T Consensus 162 AaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~ 241 (472)
T PRK07488 162 AAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPA 241 (472)
T ss_pred HHHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988765432
Q ss_pred --CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHH
Q 008755 227 --QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQR 302 (554)
Q Consensus 227 --~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 302 (554)
+.++.||++..+.+ ....++++.++++++++.|. |++|++ .++ |.+.++... ....+..
T Consensus 242 ~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~------~~~~~~~ 304 (472)
T PRK07488 242 PVALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGVTFVE-LDL--------PGLHELNEA------VGFPIAL 304 (472)
T ss_pred CcCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCCEEEe-eCC--------cCHHHHhhh------HHHHHHH
Confidence 23556777765432 22357889999999999886 777643 222 222211000 0111222
Q ss_pred HHHHhhhHHHHhhhC----------CCCCHHHHHHHHH---hhcCCHHHHHHHHHH-HHHHHHHHHhhcC--CCcEEEEc
Q 008755 303 YEFKNNHNEWIESVK----------PALDPDISAEIGE---MLEISETVIENCKSI-RNEMRSAISSLLK--DDGILVTP 366 (554)
Q Consensus 303 ~e~~~~~~~~~~~~~----------~~~~p~~~~~~~~---g~~~s~~~~~~a~~~-r~~~~~~~~~~~~--~~D~ll~P 366 (554)
++.+..+..++.... ...+|.++.+++. +..++..+|.++++. |..+++.|.++|+ ++|+||+|
T Consensus 305 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~P 384 (472)
T PRK07488 305 YEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARHGLDAILFP 384 (472)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 233333333332211 1225777666543 346789999999888 9999999999998 78999999
Q ss_pred CCCCCCCCCCCCCC------chHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008755 367 TTAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (554)
Q Consensus 367 t~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~ 439 (554)
|+|.+||+++.... ....+ ..+..||.++|++|+|+||||+|+. +|+|+|+|+++++++|..|++++.++|+
T Consensus 385 t~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL~~A~~lE~ 463 (472)
T PRK07488 385 TTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALER 463 (472)
T ss_pred CCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999975311 11222 2344578999999999999999986 7999999999999999999999999986
Q ss_pred H
Q 008755 440 S 440 (554)
Q Consensus 440 ~ 440 (554)
.
T Consensus 464 ~ 464 (472)
T PRK07488 464 V 464 (472)
T ss_pred h
Confidence 5
No 17
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=2.8e-84 Score=673.00 Aligned_cols=395 Identities=26% Similarity=0.344 Sum_probs=311.6
Q ss_pred hccCCcCceeeccccCCCCCCCCCC--CCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCe
Q 008755 29 NIKQDFGAFIEKLQLLPPPQPLPPK--APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGAT 106 (554)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai 106 (554)
+.|+.+|||++...++++++|++-+ ..||||||||+|||+|+++|++||+||+.+++ .++.+||++|+|||++|||
T Consensus 25 ~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~L~~aGAi 102 (460)
T TIGR00132 25 ANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YIPPYDATVIERLKQAGAL 102 (460)
T ss_pred HhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CCCCCchHHHHHHHHCCCE
Confidence 6789999999987766655543211 12899999999999999999999999999986 4788999999999999999
Q ss_pred eeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCc
Q 008755 107 CIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGA 186 (554)
Q Consensus 107 ~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~ 186 (554)
++||||||||+++.+++|++||+|+||||++|+|||||||||++||+|++|+|+|||||||||+||+||||||||||+||
T Consensus 103 i~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~G~ 182 (460)
T TIGR00132 103 IIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGR 182 (460)
T ss_pred EEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcchhhhHhcCceeECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEccchhhhcCCChHH
Q 008755 187 VSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADR 249 (554)
Q Consensus 187 v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-----------------~~~~~~l~i~~~~~~~~~~~~~~ 249 (554)
||+.|++|+++++|++|||+|+++|+..+++++.+.+..+ ..++.||++..+.+. ..+++
T Consensus 183 vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~---~~~~~ 259 (460)
T TIGR00132 183 VSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLKVGVVKEFSE---EMDKE 259 (460)
T ss_pred CCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCEEEEECcccc---cCCHH
Confidence 9999999999999999999999999999999988654322 123456766554332 24788
Q ss_pred HHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhh--HHHHHHHHHHHH---------HHhhhHHHHhh-
Q 008755 250 VVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRYE---------FKNNHNEWIES- 315 (554)
Q Consensus 250 ~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~--~~~~~~~~~~~e---------~~~~~~~~~~~- 315 (554)
+.++++++++.|. |++|++ .++ |.+......... ..+....+..+. ....+.+++..
T Consensus 260 v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (460)
T TIGR00132 260 VQEKFENALEVLEELGAEIVE-VSF--------PHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKT 330 (460)
T ss_pred HHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHHHHHHHHHHHHHHHHHHhccccccccccccccccHHHHHhhc
Confidence 9999999999886 777643 222 222211110000 001111011110 00112233332
Q ss_pred hCCCCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCc-hHHHHHHH
Q 008755 316 VKPALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SEDYQNRA 389 (554)
Q Consensus 316 ~~~~~~p~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~-~~~~~~~~ 389 (554)
....+++.++.++..+...+. .+|.++++.|..+++.+.++|+++|+||+||+|.+||+++..... ...+..
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~-- 408 (460)
T TIGR00132 331 RAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYLS-- 408 (460)
T ss_pred chhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhcc--
Confidence 234577888888876654443 448899999999999999999999999999999999999753221 112211
Q ss_pred hhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008755 390 FSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (554)
Q Consensus 390 ~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~ 439 (554)
..||.++|++|+|++|||+|+. +|+|+|+|+++++++|..++++++.+|+
T Consensus 409 ~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~ 459 (460)
T TIGR00132 409 DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ 459 (460)
T ss_pred cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence 1278999999999999999987 8999999999999999999999999875
No 18
>PRK06061 amidase; Provisional
Probab=100.00 E-value=1.1e-83 Score=669.49 Aligned_cols=415 Identities=23% Similarity=0.271 Sum_probs=328.8
Q ss_pred CccchhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceee
Q 008755 3 SQSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFA 64 (554)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~ 64 (554)
|-+-|+--+++.+|+.+++.++ . ++| +.|+.+|||++...++++++|+ ++. .+|||||||+
T Consensus 10 ~~~~~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~~pL~GvPv~ 88 (483)
T PRK06061 10 SGSGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGD-RLPLLGVPIA 88 (483)
T ss_pred cCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCC-CCCcCCCeEE
Confidence 4455677788889988877654 2 233 6789999999988776655443 122 3599999999
Q ss_pred eccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008755 65 VSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSS 144 (554)
Q Consensus 65 vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS 144 (554)
|||+|+++|++||+||+.. ..++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||
T Consensus 89 vKD~~~v~G~~tt~Gs~~~---~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSS 165 (483)
T PRK06061 89 VKDDVDVAGVPTAFGTAGE---VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSS 165 (483)
T ss_pred EEcccccCCceecCCCccc---CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCCh
Confidence 9999999999999999842 2345799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCc
Q 008755 145 SGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPF 224 (554)
Q Consensus 145 gGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~ 224 (554)
||||++||+|++|+|+|||||||||+||+||||||||||+||||+.|+.+.++++|++|||||+++|+..+++++.+.+.
T Consensus 166 gGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~ 245 (483)
T PRK06061 166 GGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHP 245 (483)
T ss_pred HHHHHHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999876532
Q ss_pred cc---------------CCCCceEEEccchhh--hcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhh
Q 008755 225 AA---------------QRSPRQIIIADDCFE--LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKG 285 (554)
Q Consensus 225 ~~---------------~~~~~~l~i~~~~~~--~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~ 285 (554)
.+ ..++.||++..+... .....++++.++++++++.|. |++|++ .. +.+..
T Consensus 246 ~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~ 315 (483)
T PRK06061 246 GDRHRPPPVTVSDAVGRAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGHTVVP-AD---------PDYGL 315 (483)
T ss_pred CCCcccCCccchhhhccCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------Cchhh
Confidence 21 113346666443211 112357899999999999986 776633 11 11110
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhHHHHhh--hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q 008755 286 FHKTNGELKNVMRLIQRYEFKNNHNEWIES--VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGIL 363 (554)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~l 363 (554)
... ..... +....+..+... ....+.|.++.+++.+..++..+|.++++.|..+++.|.++|+++|+|
T Consensus 316 ~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~l 385 (483)
T PRK06061 316 RLG----LNFLP------RSTAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVV 385 (483)
T ss_pred HHH----HHHHH------HHHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 000 00000 000111222222 234678999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCch----HHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008755 364 VTPTTAYPPPKLGGKEMLS----EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY 438 (554)
Q Consensus 364 l~Pt~~~~ap~~~~~~~~~----~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le 438 (554)
|+||+|.+||+++...... ......+..||.++|++|+|+||||+|.. +|+|+|+|+++++++|..++++++.+|
T Consensus 386 l~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le 465 (483)
T PRK06061 386 LAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLE 465 (483)
T ss_pred EcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHH
Confidence 9999999999987532110 00111223489999999999999999986 799999999999999999999999998
Q ss_pred HHH
Q 008755 439 ASL 441 (554)
Q Consensus 439 ~~l 441 (554)
+..
T Consensus 466 ~~~ 468 (483)
T PRK06061 466 AVS 468 (483)
T ss_pred hhc
Confidence 763
No 19
>PRK07869 amidase; Provisional
Probab=100.00 E-value=2e-83 Score=667.25 Aligned_cols=415 Identities=18% Similarity=0.249 Sum_probs=317.8
Q ss_pred chhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCC-CCCCCCCCCceeeeccccccCC
Q 008755 6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLP-PKAPHPLTGLSFAVSDLFDIEG 73 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~~pL~Gvp~~vKD~~~~~g 73 (554)
.|+..+|+.+|+.+++.++ . ++| +.|+.+|||++...+++++++++ +...|||+||||+|||+|+++|
T Consensus 10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G 89 (468)
T PRK07869 10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAG 89 (468)
T ss_pred hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCC
Confidence 5677889999999977655 2 233 67999999999887766555432 3456999999999999999999
Q ss_pred cccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhc
Q 008755 74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153 (554)
Q Consensus 74 ~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaa 153 (554)
++||+||+.+.+ .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+
T Consensus 90 ~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAa 167 (468)
T PRK07869 90 LPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA 167 (468)
T ss_pred cccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHc
Confidence 999999999876 478899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCcccccccccCcccccCCCCccccCCcccc-CCCCCcccccccCHHHHHHHHHHhcCCCccc------
Q 008755 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPI-STSLDTVGWFARDPKILRHVGHVLLQLPFAA------ 226 (554)
Q Consensus 154 g~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~-~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~------ 226 (554)
|++|+|+|||||||||+||+||||||||||+||||+.|+.|. ..++|++|||||+++|+..+++++.+.+..+
T Consensus 168 G~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~ 247 (468)
T PRK07869 168 GVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIG 247 (468)
T ss_pred CCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchh
Confidence 999999999999999999999999999999999999998774 3478999999999999999999887543211
Q ss_pred -----CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHH
Q 008755 227 -----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRL 299 (554)
Q Consensus 227 -----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~ 299 (554)
..++.||++..+.+. ....++++.++++++++.|. |++|++ .++ |....+... +. .+..
T Consensus 248 ~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~---~~-~~~~ 313 (468)
T PRK07869 248 DVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGHRVEP-VDL--------PVPASFVDD---FL-LYWG 313 (468)
T ss_pred hhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHH---HH-HHHH
Confidence 123457776544321 12357899999999999986 776633 111 211111100 00 0000
Q ss_pred HHHHHHHhhhHHHHhhhCCCCCHHHHH-----HHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCC
Q 008755 300 IQRYEFKNNHNEWIESVKPALDPDISA-----EIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK 374 (554)
Q Consensus 300 ~~~~e~~~~~~~~~~~~~~~~~p~~~~-----~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~ 374 (554)
+...+....... .....+.+.... ....+.. +..++.++.+.|+.+++.+.++|+++|+||+||+|.+||+
T Consensus 314 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~ 389 (468)
T PRK07869 314 FLAFALVRGGRR---TFGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLTPTLAHTTPE 389 (468)
T ss_pred HHHHHHHhhhhh---hcccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCCCCC
Confidence 001111010000 011122333222 2222222 4556788888899999999999999999999999999999
Q ss_pred CCCCCCc--hHHHH---HHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755 375 LGGKEML--SEDYQ---NRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (554)
Q Consensus 375 ~~~~~~~--~~~~~---~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~ 440 (554)
++..... ..... ..+..||.++|++|+|++|||+|+. +|+|+|+|+++++++|..++++++.+|+.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~~ 461 (468)
T PRK07869 390 IGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA 461 (468)
T ss_pred CCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHhc
Confidence 9753211 11111 1333579999999999999999986 89999999999999999999999999865
No 20
>PRK06529 amidase; Provisional
Probab=100.00 E-value=3.1e-83 Score=667.53 Aligned_cols=411 Identities=18% Similarity=0.231 Sum_probs=320.1
Q ss_pred hhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCC-CCCCCCCceeeeccc-cccCCcccCC
Q 008755 12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPK-APHPLTGLSFAVSDL-FDIEGYVTGF 78 (554)
Q Consensus 12 ~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~pL~Gvp~~vKD~-~~~~g~~tt~ 78 (554)
++++|+.+++.++ . ++| +.|+.+|||++...++++++|++-+ ..+|||||||+|||+ |+|+|++||+
T Consensus 5 ~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt~ 84 (482)
T PRK06529 5 DATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLSTS 84 (482)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccCc
Confidence 5667777755443 2 233 6789999999987776655544322 235999999999998 7999999999
Q ss_pred CChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCcc
Q 008755 79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF 158 (554)
Q Consensus 79 Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~ 158 (554)
||+.+++ +++.+||++|+|||+||||++||||||||+++.+|.|++||+|+||||++|+||||||||||+||+|++|+
T Consensus 85 Gs~~~~~--~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~ 162 (482)
T PRK06529 85 GSRLFKN--YQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVAL 162 (482)
T ss_pred chHHhcC--CCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCce
Confidence 9999886 48899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcc-cccccCHHHHHHHHHHhcCCCcccC----------
Q 008755 159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV-GWFARDPKILRHVGHVLLQLPFAAQ---------- 227 (554)
Q Consensus 159 a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~-G~~ar~~~dl~~v~~~l~~~~~~~~---------- 227 (554)
|+|||||||||+||+||||||||||+||||..+..+.+.++|++ |||+|+++|+..+++++.+.+..++
T Consensus 163 aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~~ 242 (482)
T PRK06529 163 AAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKES 242 (482)
T ss_pred eeecCCCCCeecChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccch
Confidence 99999999999999999999999999999987765556666766 7999999999999998876432110
Q ss_pred -----CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCC-ChhhHhhhhhhHHHHHHH
Q 008755 228 -----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP-SLKGFHKTNGELKNVMRL 299 (554)
Q Consensus 228 -----~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p-~~~~~~~~~~~~~~~~~~ 299 (554)
.++.||++..+.+. ....++++.++++++++.|. |++|++... .| .+.... ..+..
T Consensus 243 ~~~~~~~~lrIg~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~ev~~--------~p~~~~~~~-------~~~~~ 306 (482)
T PRK06529 243 LFQSLQRPLKIAFYQRSPD-GSPVSLDAAKALKQAVTFLREQGHEVVELEE--------FPLDMTEVM-------RSYYI 306 (482)
T ss_pred hccccCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEcCC--------CCCCHHHHH-------HHHHH
Confidence 13456666544321 12357899999999999986 777643211 12 121111 11111
Q ss_pred HHHHHHHhhhHHHHhhh-----CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCC
Q 008755 300 IQRYEFKNNHNEWIESV-----KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK 374 (554)
Q Consensus 300 ~~~~e~~~~~~~~~~~~-----~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~ 374 (554)
+...+....+..+.... ...+.+.++.++..|..++..+|.++++.|..+++.|.++|+++|+||+||+|++||+
T Consensus 307 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~ 386 (482)
T PRK06529 307 MNSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPK 386 (482)
T ss_pred HHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCC
Confidence 22222222222222111 2246777777777888899999999999999999999999999999999999999999
Q ss_pred CCCCCCch----------------------HHHH--HHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHH
Q 008755 375 LGGKEMLS----------------------EDYQ--NRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRF 429 (554)
Q Consensus 375 ~~~~~~~~----------------------~~~~--~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ 429 (554)
++...... ..+. ..+..||.++|++|+|+||||+|.. +|+|+|+|+++++++|..
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~ 466 (482)
T PRK06529 387 HGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDL 466 (482)
T ss_pred CCccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHH
Confidence 86521110 0111 1233489999999999999999986 799999999999999999
Q ss_pred HHHHHHHHHHH
Q 008755 430 LLDTVQNMYAS 440 (554)
Q Consensus 430 ll~~a~~le~~ 440 (554)
++++++.+|+.
T Consensus 467 lL~~a~~le~~ 477 (482)
T PRK06529 467 LLGIAEQFEAA 477 (482)
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 21
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=2e-83 Score=666.38 Aligned_cols=394 Identities=24% Similarity=0.339 Sum_probs=311.0
Q ss_pred hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHH
Q 008755 29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV 101 (554)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~ 101 (554)
+.|+.+|||++..+++++++|+ .+. .||||||||+|||+|+|+|++||+||..+.+ .++.+|+++|+|||
T Consensus 21 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~~Lr 97 (459)
T PRK00012 21 EVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILEN--YVPPYDATVVEKLK 97 (459)
T ss_pred HhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhcc--CCCCcchHHHHHHH
Confidence 7799999999988766655443 234 7999999999999999999999999999886 47889999999999
Q ss_pred hCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCccccc
Q 008755 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR 181 (554)
Q Consensus 102 ~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Glk 181 (554)
++|||++||||||||+++.+++|++||+|+||||++|+|||||||||++||+|++|+|+|||||||||+||+||||||||
T Consensus 98 ~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGvvG~K 177 (459)
T PRK00012 98 AAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLK 177 (459)
T ss_pred HCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCCCCccchhHHHcCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEccchhhhcC
Q 008755 182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLK 244 (554)
Q Consensus 182 PT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-----------------~~~~~~l~i~~~~~~~~~ 244 (554)
||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+ ..++.||++..+.+ ..
T Consensus 178 PT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~ 255 (459)
T PRK00012 178 PTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYF--GE 255 (459)
T ss_pred CCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhcccccccEEEEEcccc--cc
Confidence 999999999999999999999999999999999999987654221 12345666655443 12
Q ss_pred CChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhh--HHHHHHHHHHHH---------HHhhhHH
Q 008755 245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRYE---------FKNNHNE 311 (554)
Q Consensus 245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~--~~~~~~~~~~~e---------~~~~~~~ 311 (554)
..++++.++++++++.|. |++|++ ..+ |.+.+....+.. ..+....+..+. ....+.+
T Consensus 256 ~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
T PRK00012 256 GLDPEVKEAVEAAIKKLEDLGAEIVE-VSL--------PHTKYALPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEE 326 (459)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHHHHHHHHHHHHHHHhhcccccccccccccccHHH
Confidence 347889999999999886 777643 222 222111100000 000100010000 0011222
Q ss_pred HHhh-hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCC-chHH
Q 008755 312 WIES-VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM-LSED 384 (554)
Q Consensus 312 ~~~~-~~~~~~p~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~-~~~~ 384 (554)
++.. ....+++.++.++..+..++ ..+|.++.+.|..+++.|.++|+++|+||+||+|.+||+++.... ....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~ 406 (459)
T PRK00012 327 MYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAM 406 (459)
T ss_pred HHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhh
Confidence 2222 22357888888888765443 345888999999999999999999999999999999999875321 1112
Q ss_pred HHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008755 385 YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY 438 (554)
Q Consensus 385 ~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le 438 (554)
+.. ..||.++|++|+|+||||+|+. +|+|+|+|+++++++|..|+++++.+|
T Consensus 407 ~~~--~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E 459 (459)
T PRK00012 407 YLS--DIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459 (459)
T ss_pred hcc--ccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence 221 2379999999999999999987 689999999999999999999998874
No 22
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00 E-value=5.3e-83 Score=673.48 Aligned_cols=411 Identities=27% Similarity=0.321 Sum_probs=327.9
Q ss_pred HhhhhhhhhHHHHH-----H----Hhh-hccCCcCceeeccc-cCCCCCCCC----CCCCCCCCCceeeeccccccCCcc
Q 008755 11 LLGLGLAGILLMTK-----K----LKK-NIKQDFGAFIEKLQ-LLPPPQPLP----PKAPHPLTGLSFAVSDLFDIEGYV 75 (554)
Q Consensus 11 ~~~~~~~~~~~~~~-----~----~~~-~~~~~~~a~~~~~~-~~~~~~~~~----~~~~~pL~Gvp~~vKD~~~~~g~~ 75 (554)
+++.+|+.+++.++ . ++| +.++.+|+|++... +++++++++ ....+||+||||+|||||||+|++
T Consensus 7 ~t~~~l~~~~~~g~~t~~evv~a~l~ri~~~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~p 86 (600)
T PRK08186 7 LTLASLRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLP 86 (600)
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCcc
Confidence 36777777765543 2 233 22678999998765 333333321 124799999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCC
Q 008755 76 TGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADL 155 (554)
Q Consensus 76 tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~ 155 (554)
||+||+.+. +++.+||++|+|||++|||++||||||||+++..+.|+.||+|+||||++|+|||||||||++||+|+
T Consensus 87 TTaGs~~~~---~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~ 163 (600)
T PRK08186 87 TTAACPAFA---YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGL 163 (600)
T ss_pred cCcCCHhHc---CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCC
Confidence 999999985 36789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC--------
Q 008755 156 VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ-------- 227 (554)
Q Consensus 156 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~-------- 227 (554)
+++|+|||||||||+||+||||||||||+||||+.|++|.++++|++|||+|+++|+..+++++.+.+..+.
T Consensus 164 ~~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~ 243 (600)
T PRK08186 164 VSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPAD 243 (600)
T ss_pred cceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999876543221
Q ss_pred -----CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHH
Q 008755 228 -----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI 300 (554)
Q Consensus 228 -----~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~ 300 (554)
.++.||++..+.... ...++++.++++++++.|. |+++++ ++ .|.+.+. ....+...
T Consensus 244 ~~~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~v~e-i~--------~~~~~~~------~~~~~~~~ 307 (600)
T PRK08186 244 APAALPAGPRVGVPRAAQLE-FFGDAEAEAAFAAALARLEALGAELVE-ID--------FSPFLEA------ARLLYEGP 307 (600)
T ss_pred cccccCCCCEEEEEcchhcc-ccCCHHHHHHHHHHHHHHHHcCCeEEE-ec--------chhHHHH------HHHHHHHH
Confidence 123566665321111 1136789999999999886 776632 22 2222111 01111222
Q ss_pred HHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCC
Q 008755 301 QRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380 (554)
Q Consensus 301 ~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~ 380 (554)
+..|.+..+.+++..+...+.|.++.++..+..++..+|.+++..|..+++.+.++|+++|+||+||+|.+++ +.....
T Consensus 308 ~~ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~ 386 (600)
T PRK08186 308 WVAERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAA 386 (600)
T ss_pred HHHHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcC
Confidence 2234444556666666678899999999999999999999999999999999999999999999999999875 333222
Q ss_pred chHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755 381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (554)
Q Consensus 381 ~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~l 441 (554)
+.......+..||.++|++|+|+|+||+|+. +|+|+|+|+++++++|..++++++.+|+..
T Consensus 387 ~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~ 448 (600)
T PRK08186 387 DPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL 448 (600)
T ss_pred CchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhc
Confidence 2222223333589999999999999999976 899999999999999999999999998764
No 23
>PRK07139 amidase; Provisional
Probab=100.00 E-value=5.2e-82 Score=648.27 Aligned_cols=395 Identities=23% Similarity=0.319 Sum_probs=309.9
Q ss_pred HHHhhhccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhC
Q 008755 24 KKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEG 103 (554)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~a 103 (554)
+.+++..+.++|++++...+.. ...|||+||||+|||+|+++|++||+||+.+.+ +++.+||++|+|||+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~--~~~~~dA~vV~rLr~A 80 (439)
T PRK07139 10 KALEELKNDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLEN--FKPSYNATVVQKLINA 80 (439)
T ss_pred HHHHHhhccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHcc--CCCCCchHHHHHHHHC
Confidence 3456677788899988765543 357999999999999999999999999999876 4788999999999999
Q ss_pred CCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCC
Q 008755 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPS 183 (554)
Q Consensus 104 Gai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT 183 (554)
|||++||||||||+++.++.|++||+|+||||++|+||||||||||+||+| +|+|+|||||||||+|||||||||||||
T Consensus 81 GAIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT 159 (439)
T PRK07139 81 GAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPS 159 (439)
T ss_pred CCEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCC
Confidence 999999999999999999999999999999999999999999999999997 6999999999999999999999999999
Q ss_pred CCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC------------CCCceEEEccchhhhcCCChHHHH
Q 008755 184 YGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------------RSPRQIIIADDCFELLKIPADRVV 251 (554)
Q Consensus 184 ~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~------------~~~~~l~i~~~~~~~~~~~~~~~~ 251 (554)
+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+. .++.||++.. .+ ...++++.
T Consensus 160 ~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~-~~---~~~~~~v~ 235 (439)
T PRK07139 160 YGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLD-CF---KELEEYVA 235 (439)
T ss_pred CCCcCCCCcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEEC-cc---ccCCHHHH
Confidence 99999999999999999999999999999999999887543321 2445666642 11 22478899
Q ss_pred HHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhh--HHHHHHHHHHHH--------HHhhhHHHHh-hhCC
Q 008755 252 QVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRYE--------FKNNHNEWIE-SVKP 318 (554)
Q Consensus 252 ~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~--~~~~~~~~~~~e--------~~~~~~~~~~-~~~~ 318 (554)
++++++++.|. |++|++ ..+... .+......... ..+....+..+. ....+..++. ....
T Consensus 236 ~a~~~a~~~L~~~G~~v~~-~~~~~~------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (439)
T PRK07139 236 KKYKKLINILKSENIEVEK-IKIDEK------LLKAIKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSE 308 (439)
T ss_pred HHHHHHHHHHHHCCCEEEE-eCCChh------HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHhcchh
Confidence 99999998886 777633 222110 01100000000 000100010000 0001122322 2334
Q ss_pred CCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhh
Q 008755 319 ALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL 393 (554)
Q Consensus 319 ~~~p~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t 393 (554)
.+++.++.++..+..++. .+|.++++.|..+++.|.++|+++|+||+||+|++||+++........+. .+ +|
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~-~~--~t 385 (439)
T PRK07139 309 GFGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYM-DY--IL 385 (439)
T ss_pred ccCHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhh-hh--cc
Confidence 588999999988876654 34889999999999999999999999999999999999875311122222 11 36
Q ss_pred hcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755 394 SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (554)
Q Consensus 394 ~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~ 442 (554)
.++|++|+|+||||+|..+|+|+|+|+++++++|..|+++++++|+.++
T Consensus 386 ~~~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~ 434 (439)
T PRK07139 386 TISNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK 434 (439)
T ss_pred cCcccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 7899999999999999668999999999999999999999999997764
No 24
>PRK08137 amidase; Provisional
Probab=100.00 E-value=2e-82 Score=663.88 Aligned_cols=404 Identities=23% Similarity=0.259 Sum_probs=318.1
Q ss_pred hHHHhhhhhhhhHHHHH-----H----Hhh--h---ccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeec
Q 008755 8 LWVLLGLGLAGILLMTK-----K----LKK--N---IKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVS 66 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-----~----~~~--~---~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vK 66 (554)
...+|+.+|++++..++ . ++| + .||.+|||++...+ ++++|+ ++...|||+||||+||
T Consensus 3 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vK 81 (497)
T PRK08137 3 ALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLK 81 (497)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeee
Confidence 45678889988876554 2 233 2 27899999997654 444432 3556799999999999
Q ss_pred cccccC-CcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCcccccccc-----CCCCCCCCCCCCCCCCCCCC
Q 008755 67 DLFDIE-GYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMP 140 (554)
Q Consensus 67 D~~~~~-g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~-----~~~~~~~g~~~NP~~~~~~~ 140 (554)
|+|+|+ |++||+||..+++ .++.+||++|+|||++|||++||||||||+++. +++|++||+|+||||++|+|
T Consensus 82 D~~~v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~ 159 (497)
T PRK08137 82 DNIDAADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSP 159 (497)
T ss_pred cceeecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999 9999999999876 478899999999999999999999999999644 45899999999999999999
Q ss_pred CCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhc
Q 008755 141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220 (554)
Q Consensus 141 GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~ 220 (554)
|||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.
T Consensus 160 GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~ 239 (497)
T PRK08137 160 CGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIA 239 (497)
T ss_pred CcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccc--------------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccc
Q 008755 221 QLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 278 (554)
Q Consensus 221 ~~~~~~--------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~ 278 (554)
+.+..+ ..++.||++..+++ ..++++.++++++++.|. |+++++ .++
T Consensus 240 g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~------ 308 (497)
T PRK08137 240 GGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGAVVID-VVD------ 308 (497)
T ss_pred CCCCCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCCEEEe-ccC------
Confidence 643221 12345677655432 257889999999999886 777643 112
Q ss_pred cCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHH----------------h-------hhCCCCCHHHHHHHHHhhcCC
Q 008755 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWI----------------E-------SVKPALDPDISAEIGEMLEIS 335 (554)
Q Consensus 279 ~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----------------~-------~~~~~~~p~~~~~~~~g~~~s 335 (554)
|.+..+.. .+..+...|....+..++ . .....+++.++.++..+..++
T Consensus 309 --~~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (497)
T PRK08137 309 --LDDGDWGE-------AEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQAAPGLD 379 (497)
T ss_pred --CchhhHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHccCCCC
Confidence 21111110 011111112111111111 1 112467888999998888899
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhcC--CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC
Q 008755 336 ETVIENCKSIRNEM--RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY 411 (554)
Q Consensus 336 ~~~~~~a~~~r~~~--~~~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~ 411 (554)
..+|.++++.+..+ ++.|.++|+ ++|+||+||++ ++|+++.... ..+. ..+|.++|++|+|++|||+|+.
T Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~PaisvP~g~~ 453 (497)
T PRK08137 380 DPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLTVPMGQV 453 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEEEeCCCC
Confidence 99999998755544 479999997 68999999999 8888864211 1111 1367899999999999999998
Q ss_pred CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755 412 DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (554)
Q Consensus 412 ~g~p~g~~~~~~~~~d~~ll~~a~~le~~ 440 (554)
+|+|+|+|+++++++|..|++++.++|+.
T Consensus 454 ~GlPvGvQlig~~~~d~~LL~~a~~lE~~ 482 (497)
T PRK08137 454 QGLPVGLSFIGAAWSEARLLELGYAYEQA 482 (497)
T ss_pred CCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876
No 25
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00 E-value=8.7e-82 Score=657.12 Aligned_cols=367 Identities=28% Similarity=0.351 Sum_probs=303.1
Q ss_pred CCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCC
Q 008755 55 PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA 134 (554)
Q Consensus 55 ~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~ 134 (554)
.+||+||||+|||||||+|++||+||+.+. +++.+||++|+|||++|||++||||||||+++..+.|++||+|+|||
T Consensus 29 ~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIiiGKTN~~Efa~g~~g~n~~~G~t~NP~ 105 (561)
T TIGR02713 29 RLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNAF 105 (561)
T ss_pred CCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEEEEEeCchHhhcCCCCCCCCCCCCCCCC
Confidence 589999999999999999999999999985 37889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHH
Q 008755 135 APSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRH 214 (554)
Q Consensus 135 ~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~ 214 (554)
|++|+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..
T Consensus 106 d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vG~~Arsv~D~~~ 185 (561)
T TIGR02713 106 DPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQ 185 (561)
T ss_pred CCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCccCCCccccccCCCeeechhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccC-------------CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCccccccc
Q 008755 215 VGHVLLQLPFAAQ-------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK 279 (554)
Q Consensus 215 v~~~l~~~~~~~~-------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~ 279 (554)
+++++.+.+..++ .++.||++..+..... ..++++.+++++++++|. |++|++ +++
T Consensus 186 ~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-v~~------- 256 (561)
T TIGR02713 186 VLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQLEF-FGDSQAEAAFAAAVERLEALGVEVVE-IDF------- 256 (561)
T ss_pred HHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhcCC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecc-------
Confidence 9999876543221 1335666654211111 136678999999999986 776632 222
Q ss_pred CCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 008755 280 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKD 359 (554)
Q Consensus 280 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~ 359 (554)
|.+.+.. ...+...+..+.+..+..++..+.+.+.|.++.++..+..++..+|.+++..|+.+++.+.++|++
T Consensus 257 -~~~~~~~------~~l~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~ 329 (561)
T TIGR02713 257 -APFLETA------ALLYEGPWVAERYAAVGEFVEAQPDALDPVVRGIITSATRFSAADAFAAQYRLAALRRKAEALLAG 329 (561)
T ss_pred -hhHHHHH------HHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2221110 111112222233444556666667789999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008755 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY 438 (554)
Q Consensus 360 ~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le 438 (554)
+|+||+||+|.+++..+ ...+..........||.++|++|+|+|+||+|+. +|+|+|+|+++++++|..++++++.+|
T Consensus 330 ~DvLl~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le 408 (561)
T TIGR02713 330 VDVLLVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQ 408 (561)
T ss_pred CCEEEeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHH
Confidence 99999999999875432 2122222223334589999999999999999986 899999999999999999999999998
Q ss_pred HHH
Q 008755 439 ASL 441 (554)
Q Consensus 439 ~~l 441 (554)
+..
T Consensus 409 ~~~ 411 (561)
T TIGR02713 409 AAS 411 (561)
T ss_pred hcc
Confidence 763
No 26
>PRK06828 amidase; Provisional
Probab=100.00 E-value=3.7e-78 Score=624.08 Aligned_cols=396 Identities=18% Similarity=0.200 Sum_probs=302.4
Q ss_pred hhhhhhhhHHHHH-----H----Hhh--hcc---CCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccc
Q 008755 12 LGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD 70 (554)
Q Consensus 12 ~~~~~~~~~~~~~-----~----~~~--~~~---~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~ 70 (554)
++.+|+.+++.++ . ++| +.| +.+|||++...+ ++++|+ .++..|||+||||+|||+|+
T Consensus 14 ~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~ 92 (491)
T PRK06828 14 TIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIE 92 (491)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEE
Confidence 5677777755544 2 233 556 589999997665 444332 35567999999999999999
Q ss_pred cCC-cccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccc-----cCCCCCCCCCCCCCCCC---CCCCC
Q 008755 71 IEG-YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP---SQMPG 141 (554)
Q Consensus 71 ~~g-~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~---~~~~G 141 (554)
|+| ++||+||+.+.+ .++.+||++|+|||++|||++||||||||+++ .++.|++||+|+||||+ +|+||
T Consensus 93 v~gg~~tt~Gs~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pG 170 (491)
T PRK06828 93 TNDSMHTSAGTIALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVG 170 (491)
T ss_pred ecCCCcCCcCcHHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCC
Confidence 996 999999999876 47889999999999999999999999999975 58899999999999999 68999
Q ss_pred CCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcC
Q 008755 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ 221 (554)
Q Consensus 142 GSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~ 221 (554)
|||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+
T Consensus 171 GSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g 250 (491)
T PRK06828 171 GSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTG 250 (491)
T ss_pred cCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCccc---------------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccc
Q 008755 222 LPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 278 (554)
Q Consensus 222 ~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~ 278 (554)
.+..+ ..++.||++..+.+......++++.++++++++.|. |++|++..++....
T Consensus 251 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~p~~~-- 328 (491)
T PRK06828 251 VDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGATVVEDIDIPSFH-- 328 (491)
T ss_pred CCccCccccccCcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCCEEEecccCccch--
Confidence 44211 134567776432111011257889999999999986 77775433332110
Q ss_pred cCCChhhHhhhhhhHHHHHHHHHHHH--HH-----hhhHHHH------hhhCCCCCHHHHH-HHHHhhcCCHHHHHHHHH
Q 008755 279 KVPSLKGFHKTNGELKNVMRLIQRYE--FK-----NNHNEWI------ESVKPALDPDISA-EIGEMLEISETVIENCKS 344 (554)
Q Consensus 279 ~~p~~~~~~~~~~~~~~~~~~~~~~e--~~-----~~~~~~~------~~~~~~~~p~~~~-~~~~g~~~s~~~~~~a~~ 344 (554)
..+..+.. ..+....+..+. .. ....+.+ ......+++.... ++..+..++..+|.++++
T Consensus 329 --~~~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~~a~~ 402 (491)
T PRK06828 329 --REWSWGVL----LYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLRNPEYLNARL 402 (491)
T ss_pred --hHHHHHHH----HHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCChHHHHHHHH
Confidence 00000000 001111111100 00 0000111 1223357775444 466778889999999998
Q ss_pred HHHHHH--HHHHhhcCC--CcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeE
Q 008755 345 IRNEMR--SAISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVS 419 (554)
Q Consensus 345 ~r~~~~--~~~~~~~~~--~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~ 419 (554)
.|..+. +.++++|++ +|+||+||++.. .++|++|+|+||||+|+. +|+|+|+|
T Consensus 403 ~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP~G~~~~GlPvGlQ 460 (491)
T PRK06828 403 EDIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIPAGYMEGGRPFGIT 460 (491)
T ss_pred HHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEeecCCCCCCcCeEEE
Confidence 887754 699999984 899999999763 235699999999999986 79999999
Q ss_pred EEeccCCcHHHHHHHHHHHHH
Q 008755 420 FIARHGGDRFLLDTVQNMYAS 440 (554)
Q Consensus 420 ~~~~~~~d~~ll~~a~~le~~ 440 (554)
+++++++|..|++++..+|+.
T Consensus 461 lig~~~~D~~LL~~A~a~E~~ 481 (491)
T PRK06828 461 LASTAFSEGTLIKLAYAFEQA 481 (491)
T ss_pred EECCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999865
No 27
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=1.3e-79 Score=643.70 Aligned_cols=384 Identities=30% Similarity=0.422 Sum_probs=292.4
Q ss_pred hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHH
Q 008755 29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV 101 (554)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~ 101 (554)
+.|+.+|||++...+.++++|+ ++...+|||||||+|||+|+++|++||+||..+.+ .++++|+++|+|||
T Consensus 12 ~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~--~~~~~~a~~v~~L~ 89 (441)
T PF01425_consen 12 AYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALAD--NPPTEDAPVVQRLR 89 (441)
T ss_dssp HHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTT--BBBSSS-HHHHHHH
T ss_pred HhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccC--cCcccccchhhhee
Confidence 7789999999988777666543 46788999999999999999999999999999986 48889999999999
Q ss_pred hCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCccccc
Q 008755 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR 181 (554)
Q Consensus 102 ~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Glk 181 (554)
++|||++||||||||+++.++.|+.||+|+||||++++|||||||||++||+|++++|+|||||||||+||+||||||||
T Consensus 90 ~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~PAa~~Gv~Glk 169 (441)
T PF01425_consen 90 AAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRIPAAFCGVVGLK 169 (441)
T ss_dssp HTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEE
T ss_pred cccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccCchhccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-------------------CCCCceEEEccchhhh
Q 008755 182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-------------------QRSPRQIIIADDCFEL 242 (554)
Q Consensus 182 PT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-------------------~~~~~~l~i~~~~~~~ 242 (554)
||+|+||..|++|+++++|++|||||+++|+..+++++.+.+..+ ..++.||++..+.+.
T Consensus 170 PT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~lrIGv~~~~~~- 248 (441)
T PF01425_consen 170 PTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGLRIGVPRDDGQ- 248 (441)
T ss_dssp -STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-EEEEEGGGG--
T ss_pred cccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCccccccccccc-
Confidence 999999999999999999999999999999999999988764322 123567777665441
Q ss_pred cCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhh------hHHHHh
Q 008755 243 LKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN------HNEWIE 314 (554)
Q Consensus 243 ~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~------~~~~~~ 314 (554)
....++++.++++++++.|. |+++++ ..+|.+.+... .+..+...+.... +..++.
T Consensus 249 ~~~~~~~v~~a~~~a~~~L~~~G~~vv~---------~~~p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~ 312 (441)
T PF01425_consen 249 WVPVDPEVRRAFEEAAEALEAAGAEVVE---------VDLPDLDEAMD-------AYYRIFVSEGAANLARYKDFARLLA 312 (441)
T ss_dssp SSTSSHHHHHHHHHHHHHHHHTT-EEEE---------E--TTGGHHHH-------HHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccccccccc---------ccCchHHHHHH-------HHhhhHHHHHHHHHhhhhHHHHhhh
Confidence 23468899999999999987 766643 12333332211 1111111122211 112221
Q ss_pred -hhCCCCCHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCc--hHHH-
Q 008755 315 -SVKPALDPDISAEIGEMLEISET-----VIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML--SEDY- 385 (554)
Q Consensus 315 -~~~~~~~p~~~~~~~~g~~~s~~-----~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~--~~~~- 385 (554)
.....+.+.+..++..+...... .|.++++.|..+++.+.++|+++|+||+||++.++|+++..... ....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~ 392 (441)
T PF01425_consen 313 KWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTAL 392 (441)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHH
T ss_pred cccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhh
Confidence 22345667777777666543222 38999999999999999999999999999999999999876431 1111
Q ss_pred --HHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHH
Q 008755 386 --QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL 431 (554)
Q Consensus 386 --~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll 431 (554)
...+..+|.++|++|+|+++||+|+. +|+|+|+|+++++++|+.||
T Consensus 393 ~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL 441 (441)
T PF01425_consen 393 WNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL 441 (441)
T ss_dssp HHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred hhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence 12334567999999999999999996 89999999999999999886
No 28
>PRK11910 amidase; Provisional
Probab=100.00 E-value=2.7e-76 Score=609.45 Aligned_cols=392 Identities=20% Similarity=0.274 Sum_probs=295.9
Q ss_pred cchhHHHhhhhhhhhHHHHH-----H----Hhh--hccC---CcCceeeccccCCCCCCCC-----CCCCCCCCCceeee
Q 008755 5 SANLWVLLGLGLAGILLMTK-----K----LKK--NIKQ---DFGAFIEKLQLLPPPQPLP-----PKAPHPLTGLSFAV 65 (554)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~---~~~a~~~~~~~~~~~~~~~-----~~~~~pL~Gvp~~v 65 (554)
.|.+...|+.+|+.+++.++ . ++| +.|+ .+|||++...+ ++++|++ ...+||||||||+|
T Consensus 159 ~~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~V 237 (615)
T PRK11910 159 EPLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLL 237 (615)
T ss_pred cccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEE
Confidence 35566677788887766543 2 343 5565 79999998764 3433321 12358999999999
Q ss_pred ccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccc-----cCCCCCCCCCCCCCCCCCCCC
Q 008755 66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAPSQMP 140 (554)
Q Consensus 66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~~~~~ 140 (554)
||||+++|++||+||.++.+ .++.+||++|+|||++||||+|||||+||+++ ..+.|.+||+|+||||++|+|
T Consensus 238 KDni~t~G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~p 315 (615)
T PRK11910 238 KDNIGTKELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDP 315 (615)
T ss_pred EcCcccCCCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCC
Confidence 99999999999999999986 47889999999999999999999999999977 346788999999999999999
Q ss_pred CCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhc
Q 008755 141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220 (554)
Q Consensus 141 GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~ 220 (554)
||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+|.|+..+++++.
T Consensus 316 GGSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~ 395 (615)
T PRK11910 316 SGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALT 395 (615)
T ss_pred CCCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCccc-----CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhH
Q 008755 221 QLPFAA-----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL 293 (554)
Q Consensus 221 ~~~~~~-----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~ 293 (554)
+.+..+ ..++.||++..+. .++.+..+++++++.|. |++|++...+ |.+...
T Consensus 396 g~~~~~~l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~~~--------p~~~~~------- 454 (615)
T PRK11910 396 NTTSNPPLSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGIAV--------GEFEQK------- 454 (615)
T ss_pred CCCCcCccCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCCCC--------ccHHHH-------
Confidence 654321 2455677775431 24567788888888776 7777542222 222111
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhh-----------------C---CCCCHHHHHHHHHhh-cCCHHH-HHHHHHHHHHHHH
Q 008755 294 KNVMRLIQRYEFKNNHNEWIESV-----------------K---PALDPDISAEIGEML-EISETV-IENCKSIRNEMRS 351 (554)
Q Consensus 294 ~~~~~~~~~~e~~~~~~~~~~~~-----------------~---~~~~p~~~~~~~~g~-~~s~~~-~~~a~~~r~~~~~ 351 (554)
...+..+..+|+...+..|+... . ..+++.. ++..+. .++..+ +..+++.|..+++
T Consensus 455 ~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (615)
T PRK11910 455 DTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQSE--LVKSQQSTITKQQADNLASNLIQSSQN 532 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHHH--HHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 11122233344444444443211 1 2233331 112222 234443 3336667778888
Q ss_pred HHHhhcC--CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC--CCCCceeEEEeccCCc
Q 008755 352 AISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGD 427 (554)
Q Consensus 352 ~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~--~g~p~g~~~~~~~~~d 427 (554)
.++++|+ ++|+||+|+.... .+...+++|+|+||||+|+. +|+|+|+||++++++|
T Consensus 533 ~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~sE 592 (615)
T PRK11910 533 ELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITARNSD 592 (615)
T ss_pred HHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCCCCH
Confidence 9999995 7999999973210 01124599999999999986 4999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008755 428 RFLLDTVQNMYASLQ 442 (554)
Q Consensus 428 ~~ll~~a~~le~~l~ 442 (554)
..|++++.++|+..+
T Consensus 593 ~~LL~~A~a~Eq~t~ 607 (615)
T PRK11910 593 KILLNMGYAYEQQSK 607 (615)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999987643
No 29
>PRK06707 amidase; Provisional
Probab=100.00 E-value=1.2e-74 Score=600.46 Aligned_cols=386 Identities=23% Similarity=0.261 Sum_probs=293.2
Q ss_pred hHHHhhhhhhhhHHHHH-----H----Hhh--hcc---CCcCceeeccccCCCCCCC------CCCCCCCCCCceeeecc
Q 008755 8 LWVLLGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL------PPKAPHPLTGLSFAVSD 67 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-----~----~~~--~~~---~~~~a~~~~~~~~~~~~~~------~~~~~~pL~Gvp~~vKD 67 (554)
+...+..+|..++..++ . ++| +.| +.+|||++...+ ++++|+ +....+|||||||+|||
T Consensus 68 i~~~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD 146 (536)
T PRK06707 68 VVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKD 146 (536)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEec
Confidence 44556777777765443 2 344 445 579999997654 434332 11235899999999999
Q ss_pred cccc-CCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccc-----cCCCCCCCCCCCCCCCC-CCCC
Q 008755 68 LFDI-EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP-SQMP 140 (554)
Q Consensus 68 ~~~~-~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~-~~~~ 140 (554)
||++ +|++||+||.++.+ +++.+||++|+|||++|||++|||||+||++. .++.|++||+|+||||+ .++|
T Consensus 147 ~i~~~~g~~TtaGs~~l~~--~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~p 224 (536)
T PRK06707 147 NVQTAKVMPTSAGTYVLKD--WIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDT 224 (536)
T ss_pred ccccCCCCccCcccHhhcc--CCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCC
Confidence 9999 99999999999976 47889999999999999999999999999963 57788999999999999 6899
Q ss_pred CCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhc
Q 008755 141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220 (554)
Q Consensus 141 GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~ 220 (554)
||||||||++||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|+|.|+..+++++.
T Consensus 225 GGSSsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~ 304 (536)
T PRK06707 225 SGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMI 304 (536)
T ss_pred CCCCchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccc---------------------CCCCceEEEccchhhhcCCChHHHHHH-HHHHHHHHc--CCccceeccCcccc
Q 008755 221 QLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLF--GRQVLKHENLGEYF 276 (554)
Q Consensus 221 ~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~-~~~a~~~l~--G~~vv~~~~l~~~v 276 (554)
+.+..| ..+++||++..+.. .++++.++ ++++++.|. |+++++...+...
T Consensus 305 g~d~~d~~~~~~~~~~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~~l~~~- 378 (536)
T PRK06707 305 GYDEKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYIQLNNG- 378 (536)
T ss_pred CCCCCccccccccccCCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEeccCCchh-
Confidence 654221 13456777754321 24556666 476777665 8877542322210
Q ss_pred cccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhC--------C--CC-CHHHHHHHHHhhcCC---------H
Q 008755 277 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVK--------P--AL-DPDISAEIGEMLEIS---------E 336 (554)
Q Consensus 277 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--------~--~~-~p~~~~~~~~g~~~s---------~ 336 (554)
.... ..+..+|+..++..|+.... + .+ .++++.++..+..+. .
T Consensus 379 -----~~~~------------~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (536)
T PRK06707 379 -----GVDN------------LQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITK 441 (536)
T ss_pred -----hHHH------------HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhccccc
Confidence 0000 01112333333333322110 0 02 256666666554321 2
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcC--CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC-C
Q 008755 337 -TVIENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-D 412 (554)
Q Consensus 337 -~~~~~a~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~ 412 (554)
..+..+++.|..+++.++++|+ ++|+||+|... .+.++|++|+|+||||+|+. +
T Consensus 442 ~~~~~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~~----------------------~t~~an~aG~PaitvP~G~~~~ 499 (536)
T PRK06707 442 DEFEKVVQTSQENAKKELDRYLVEKGLDALVMINNE----------------------EVLLSAVAGYPELAVPAGYDNN 499 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEecCCC----------------------cchhhHhcCCCeEEEecccCCC
Confidence 2344566778889999999998 89999998310 25678999999999999986 8
Q ss_pred CCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755 413 KCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (554)
Q Consensus 413 g~p~g~~~~~~~~~d~~ll~~a~~le~~l 441 (554)
|+|+|+||++.+++|..|++++..+|+..
T Consensus 500 GlP~Glqlig~~~~e~~LL~~A~~~E~~~ 528 (536)
T PRK06707 500 GEPVGAVFVGKQFGEKELFNIGYAYEQQS 528 (536)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999998754
No 30
>PRK06565 amidase; Validated
Probab=100.00 E-value=2e-72 Score=576.65 Aligned_cols=429 Identities=19% Similarity=0.211 Sum_probs=296.6
Q ss_pred HHHhhhhhhhhHHHHH-----H----Hhh--hcc-----CCcCceeeccccCCCCCCC-------CCCCCCCCCCceeee
Q 008755 9 WVLLGLGLAGILLMTK-----K----LKK--NIK-----QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAV 65 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~-----~----~~~--~~~-----~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~v 65 (554)
..++..+|..++..++ . ++| +.| +.+|||+...++ ++++|+ +++..||||||||+|
T Consensus 5 ~~~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~v 83 (566)
T PRK06565 5 TEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTA 83 (566)
T ss_pred ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEE
Confidence 3456667766655443 2 343 556 689999986554 444332 355679999999999
Q ss_pred ccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCC----CCC
Q 008755 66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ----MPG 141 (554)
Q Consensus 66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~----~~G 141 (554)
||+|+++|++||+||+.+.+ .++.+||++|+|||+||||++||||||||+++.++ |.+||+|+||||+++ +||
T Consensus 84 KD~~~v~G~~TT~Gs~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pG 160 (566)
T PRK06565 84 KDSYLVKGLTAASGSPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFAS 160 (566)
T ss_pred ecccccCCCCcccccHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCC
Confidence 99999999999999999976 47889999999999999999999999999999876 679999999999999 599
Q ss_pred CCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcC
Q 008755 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ 221 (554)
Q Consensus 142 GSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~ 221 (554)
|||||||++||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|+++|+..+++++.+
T Consensus 161 GSSgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g 240 (566)
T PRK06565 161 GSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVA 240 (566)
T ss_pred CCCccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCccc--------------------------------CCCCceEEEccchhhhcC------------------CChHHHH
Q 008755 222 LPFAA--------------------------------QRSPRQIIIADDCFELLK------------------IPADRVV 251 (554)
Q Consensus 222 ~~~~~--------------------------------~~~~~~l~i~~~~~~~~~------------------~~~~~~~ 251 (554)
.+..+ ..+++||++...++.... ..++++.
T Consensus 241 ~D~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 320 (566)
T PRK06565 241 DDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVI 320 (566)
T ss_pred CCcccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHH
Confidence 43211 124567877655432110 1256899
Q ss_pred HHHHHHHHHHc--CCccceeccCccc--ccccCC---Ch-------hhHhhh-hhhH-HHHHHH-HHHHH--HHhhhHHH
Q 008755 252 QVVIKSTEKLF--GRQVLKHENLGEY--FDSKVP---SL-------KGFHKT-NGEL-KNVMRL-IQRYE--FKNNHNEW 312 (554)
Q Consensus 252 ~~~~~a~~~l~--G~~vv~~~~l~~~--v~~~~p---~~-------~~~~~~-~~~~-~~~~~~-~~~~e--~~~~~~~~ 312 (554)
++++++++.|. |++|++ .++... .+...+ .+ .+|... ...+ ...+.. +.... ....+.+.
T Consensus 321 ~~~~~a~~~L~~~Ga~vv~-v~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~yL~~~~~~~~~sl~di 399 (566)
T PRK06565 321 DLWEAARRALEAAGAEVIE-VDFPLVSNCEGDRPGAPTVFNRGLVSPEFLHDELWELSGWAFDDFLRANGDPKLNRLADV 399 (566)
T ss_pred HHHHHHHHHHHHCCCEEEE-eecCCccccccccccccccccccccchhhhhccccchhHHHHHHHHHhcCCCCCCCHHHh
Confidence 99999999997 887753 333321 011001 00 011000 0000 000000 00000 00001111
Q ss_pred Hhh--h--CC----CCCHHHHHH----HH--H-h-hc-CCHHHHHHHHHHHHHHHH-HHHhhcC--CCcEEEEcCCCCCC
Q 008755 313 IES--V--KP----ALDPDISAE----IG--E-M-LE-ISETVIENCKSIRNEMRS-AISSLLK--DDGILVTPTTAYPP 372 (554)
Q Consensus 313 ~~~--~--~~----~~~p~~~~~----~~--~-g-~~-~s~~~~~~a~~~r~~~~~-~~~~~~~--~~D~ll~Pt~~~~a 372 (554)
... . .+ ...+..... .+ . + .. .....|.+.++.++..++ .++++|+ +.|+||.|+.+..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~~~~~ 479 (566)
T PRK06565 400 DGPQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTVADVG 479 (566)
T ss_pred hhhhcccCcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc
Confidence 110 0 00 000111100 11 0 1 01 112235556666666665 6777775 56899999999998
Q ss_pred CCCCCCCCchHHH--HH-HHhhhhhc-ccccCCceecccCCCC--CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755 373 PKLGGKEMLSEDY--QN-RAFSLLSI-ASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (554)
Q Consensus 373 p~~~~~~~~~~~~--~~-~~~~~t~~-~nl~G~PaisvP~g~~--~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~ 442 (554)
|..+........+ ++ .+...+.. .+++|+|+||||+|+. .|||+|++|+++.|+|..|++++..+|++.+
T Consensus 480 ~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~~~~ 555 (566)
T PRK06565 480 PADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGS 555 (566)
T ss_pred cccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHHHhc
Confidence 8876543321111 11 11122333 4899999999999986 7999999999999999999999999997653
No 31
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-67 Score=522.77 Aligned_cols=399 Identities=28% Similarity=0.341 Sum_probs=288.1
Q ss_pred hccCCcCceeeccccCCCCCC-------CCCCCCCCCCCceeeeccccccCCccc-CCCChhhhhcCCCCCCCHHHHHHH
Q 008755 29 NIKQDFGAFIEKLQLLPPPQP-------LPPKAPHPLTGLSFAVSDLFDIEGYVT-GFGHPEWARTHSAASRTSTVVSTL 100 (554)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~pL~Gvp~~vKD~~~~~g~~t-t~Gs~~~~~~~~~~~~da~~v~~L 100 (554)
...+.+|+++....+.++.++ .++...+||+||||+|||||+++|++| ||+|..+.. +.++.||++|++|
T Consensus 46 ~~~~~~~~~i~~~~~~~~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l~~--~~~p~dAtVV~~L 123 (506)
T KOG1211|consen 46 NKWKPLNAKITVINEEALKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWMLEH--YNPPKDATVVKKL 123 (506)
T ss_pred hhcccccceeeeccHHHHHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhhhhcc--CCCccccHHHHHH
Confidence 444445555554333233322 345678999999999999999999999 777766654 6899999999999
Q ss_pred HhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccc
Q 008755 101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180 (554)
Q Consensus 101 ~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Gl 180 (554)
|++|||++|||||+||+++..+++.+||+|+|||++.+.|||||||||++||++++++|+|||||||+|+||++|||+||
T Consensus 124 ~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtDTgGSvR~PAa~~gvvG~ 203 (506)
T KOG1211|consen 124 REAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTDTGGSVRVPAAYCGVVGF 203 (506)
T ss_pred hhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhccccCCCCccCcHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc--------------------CCCCceEEEccchh
Q 008755 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------------------QRSPRQIIIADDCF 240 (554)
Q Consensus 181 kPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~--------------------~~~~~~l~i~~~~~ 240 (554)
|||+|++|+.|++|++.++|++||+||++.|...+++++.+.+..| ...+.|++|+..++
T Consensus 204 KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~~~~~l~~~r~GIp~~~~ 283 (506)
T KOG1211|consen 204 KPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELIGSMDLSGLRIGIPKERL 283 (506)
T ss_pred ccCcceecccccchhhhcccccchhhcccchhHHHhhhhcCCCccCcccccCCcccccchhhcccccccccccCceeecc
Confidence 9999999999999999999999999999999999988876654322 23345666766554
Q ss_pred hhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHh---------hh
Q 008755 241 ELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN---------NH 309 (554)
Q Consensus 241 ~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~---------~~ 309 (554)
... ....+.+.+++..+.|. |..+ .+..+.......... . .....+++..+.++.... ..
T Consensus 284 ~~~--~~~~v~~~~~~~~~~l~~~~~~~-~~~~lp~~~~~~~~~----~--~~s~~ea~s~laryd~~~~~~r~~~~~~~ 354 (506)
T KOG1211|consen 284 VQG--LSSGVLSLWEELADLLGSLGAKV-NEVSLPTTINGLCGY----S--LSSASEAASNLARYDGILYGHRRDFKVAD 354 (506)
T ss_pred ccc--ccHHHHHHHHHHHHHhhcccccc-eeeecchhhhccccc----c--ccchhhhhhhHHHHHHHHhhcchhhhhcc
Confidence 322 24567777777766654 4443 222222221111110 0 000123333333332221 11
Q ss_pred HHHHhh-hCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHH---hhcCCCcEEEEcCCCCCCCCCCCCCC
Q 008755 310 NEWIES-VKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAIS---SLLKDDGILVTPTTAYPPPKLGGKEM 380 (554)
Q Consensus 310 ~~~~~~-~~~~~~p~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~---~~~~~~D~ll~Pt~~~~ap~~~~~~~ 380 (554)
..++.. +...++.++..++..+.-+ ....+.++++.|+.+...+. ..+++.|+|++||.|.+.+..... .
T Consensus 355 ~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~~~~~~~~~~-~ 433 (506)
T KOG1211|consen 355 EEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEKALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYREFEK-E 433 (506)
T ss_pred ceeeeeccccccchhhcceeeccceehhhhhhHHHHHHHHHHHHHHHHhhhhcccccccCCeeeccCCCCcchhhhhh-c
Confidence 222221 2234555666666654322 33345678888888887877 688999999999943332222111 1
Q ss_pred chHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008755 381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (554)
Q Consensus 381 ~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~ 439 (554)
...........+++++|++|+|+|+||+|+. +|+|+|+|+++..++|..++.++..++.
T Consensus 434 ~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~g~~~~e~~~~~l~~~~~~ 493 (506)
T KOG1211|consen 434 TLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFAEPTLIDLALAIGQ 493 (506)
T ss_pred ccccccccccceeecccccCCCceEEeeeecCCCCceEEEeecccccchHHHHHHHhhcc
Confidence 1111111223479999999999999999987 8899999999999999988888887664
No 32
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-61 Score=482.42 Aligned_cols=417 Identities=22% Similarity=0.247 Sum_probs=299.2
Q ss_pred hHHHhhhhhhhhHHHHHH-----H----hh--hccCCcCceeeccccCCCCCCCC-------CCCCCCCCCceeeecccc
Q 008755 8 LWVLLGLGLAGILLMTKK-----L----KK--NIKQDFGAFIEKLQLLPPPQPLP-------PKAPHPLTGLSFAVSDLF 69 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-----~----~~--~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~pL~Gvp~~vKD~~ 69 (554)
+..+|++.|++.++++|. + +| .+|+.+||+++...+.+..+++. ...++||.||||+|||+|
T Consensus 52 il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~ 131 (560)
T KOG1212|consen 52 ILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESI 131 (560)
T ss_pred HhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhhe
Confidence 667899999999988883 1 33 88999999999888766555431 225689999999999999
Q ss_pred ccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHH
Q 008755 70 DIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV 149 (554)
Q Consensus 70 ~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaa 149 (554)
.++|+.+|.|.....+ .++++|+.+|+.||++|||++.+||+||..++..+.|+.||+|.||||.+|+|||||||+||
T Consensus 132 ~vkg~d~T~G~~~~~~--~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEaA 209 (560)
T KOG1212|consen 132 SVKGYDSTAGLLARTN--QPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEAA 209 (560)
T ss_pred eecCccccchhhhccC--CCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHHH
Confidence 9999999999876554 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCC----CCCcccccccCHHHHHHHHHHhcCCCc-
Q 008755 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRHVGHVLLQLPF- 224 (554)
Q Consensus 150 aVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~----s~d~~G~~ar~~~dl~~v~~~l~~~~~- 224 (554)
++++|.++||+|||.|||||+||+|||++|+|||.+|+|..|+.+..+ .+-+.|||+|+++|+..++..+.+...
T Consensus 210 LigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~~ 289 (560)
T KOG1212|consen 210 LLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSGP 289 (560)
T ss_pred HHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999999999999877643 345789999999999999988776331
Q ss_pred --cc--------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhH
Q 008755 225 --AA--------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF 286 (554)
Q Consensus 225 --~~--------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~ 286 (554)
.+ ..++.++++-.+ .....+.+...+++.+..+.+. |+++++. ..|.+...
T Consensus 290 ~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~--dg~~~~~pa~~RAv~~~~~~l~~~g~~~~~f---------~~~~~~~~ 358 (560)
T KOG1212|consen 290 KLLDPYPVPVKFMEVFYKSSDKLVIGYYVD--DGFFDPSPAMQRAVQETIDLLEKAGHEVVPF---------DLPDLKHV 358 (560)
T ss_pred cccCCCCCCchhhhhhhhccCCccceEEec--CCCCCcCHHHHHHHHHHHHHHHhcCcceeEe---------cCCcchHH
Confidence 11 112233333211 1223457788888888876665 7776431 11222211
Q ss_pred hhhhhh-HHHHHHHHHHHHHH-hhhHHHHhhh--CCCCCHHHHH-----------HHHHhhcCCHHHHHHHHHHHHHHHH
Q 008755 287 HKTNGE-LKNVMRLIQRYEFK-NNHNEWIESV--KPALDPDISA-----------EIGEMLEISETVIENCKSIRNEMRS 351 (554)
Q Consensus 287 ~~~~~~-~~~~~~~~~~~e~~-~~~~~~~~~~--~~~~~p~~~~-----------~~~~g~~~s~~~~~~a~~~r~~~~~ 351 (554)
+..+.. .......+ ..... ..+....... --.+...... .+.........+.++.+..++.+|.
T Consensus 359 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~yrl 437 (560)
T KOG1212|consen 359 ADMFFRVMPDDGDYI-SEMYLLDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNSDTAELRQNYEDIESYRL 437 (560)
T ss_pred HHHHHHHcccccchh-hHHhhcccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 110000 00000000 00000 0000000000 0011111111 1122223344445555555666665
Q ss_pred HHHh--hcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC------------------
Q 008755 352 AISS--LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY------------------ 411 (554)
Q Consensus 352 ~~~~--~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~------------------ 411 (554)
.+.. ...+.|+||||+.+++||+|+...... ..+.||.+||++|+||.+||++..
T Consensus 438 k~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~-----~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~~~D~~~~ 512 (560)
T KOG1212|consen 438 KFILYWLLGKDDVLICPSFPTPAPPHNYPLLLV-----NGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPMNDKWAT 512 (560)
T ss_pred HHHHHHHcCCCCEEEeCCCCCCCCcCCCchhhc-----cchhHHHHHHhccCCcccccccccchhhhcccccccccHHHH
Confidence 5554 446789999999999999998642211 234589999999999888887631
Q ss_pred ---------CCCCceeEEEeccCCcHHHHHHHHHHHHHHHH
Q 008755 412 ---------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 443 (554)
Q Consensus 412 ---------~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~~ 443 (554)
.|||+|+|+++.+++|+.++++++.+|+.+..
T Consensus 513 ~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg 553 (560)
T KOG1212|consen 513 KVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGG 553 (560)
T ss_pred hCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999999999987643
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=4.5e-14 Score=130.95 Aligned_cols=94 Identities=47% Similarity=0.667 Sum_probs=90.3
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
....++.+...|+.+++.++|++|+..|++||+++|.++.+|.|+|.+|.++|+|+.|+++|+.||.+||.+.++|.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.+|+.+|++++|++
T Consensus 157 ~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 157 LAYLALGKYEEAIE 170 (304)
T ss_pred HHHHccCcHHHHHH
Confidence 99999999999975
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.5e-12 Score=127.42 Aligned_cols=93 Identities=42% Similarity=0.671 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
+.+..+..+||.+|++|+|++||.+|++||+++|+.+..|.|++-||..+|+|++.++++.++|+++|++.+++++++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHhcC
Q 008755 542 REMLGYYKEAIEG 554 (554)
Q Consensus 542 ~~~~~~~~~A~~~ 554 (554)
+.++|++++|+.|
T Consensus 193 ~E~lg~~~eal~D 205 (606)
T KOG0547|consen 193 HEQLGKFDEALFD 205 (606)
T ss_pred HHhhccHHHHHHh
Confidence 9999999999865
No 35
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=5.1e-12 Score=110.02 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~ 546 (554)
++.+|..+++.|++++|+..|+++++++|.+..+|.++|.++..+|+|++|+..|+++++++|+++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 55566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHhc
Q 008755 547 YYKEAIE 553 (554)
Q Consensus 547 ~~~~A~~ 553 (554)
++++|++
T Consensus 107 ~~~eAi~ 113 (144)
T PRK15359 107 EPGLARE 113 (144)
T ss_pred CHHHHHH
Confidence 7776653
No 36
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=7.4e-12 Score=107.01 Aligned_cols=93 Identities=11% Similarity=0.001 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
++..+..+.+|..+++.|++++|+..|+-...+||.+...|+++|.|+..+|+|++|+..|.+|+.++|+++.++++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
|+..+|+.+.|++
T Consensus 112 c~L~lG~~~~A~~ 124 (157)
T PRK15363 112 CYLACDNVCYAIK 124 (157)
T ss_pred HHHHcCCHHHHHH
Confidence 9999999999864
No 37
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-11 Score=123.09 Aligned_cols=117 Identities=39% Similarity=0.571 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA 507 (554)
Q Consensus 428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 507 (554)
..++.-.+..|+.+......... +|+.+......|+.+|+.|+|.+|+.+|++||..+|++..+|.|+|.|
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~---------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYI---------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC 401 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 44666666666666665555443 346678888889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|.+++++..|+.+++++++++|++.++|++.|.++..+++|++|++
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999874
No 38
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.33 E-value=5.3e-12 Score=95.07 Aligned_cols=67 Identities=33% Similarity=0.502 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDK 529 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p 529 (554)
++..|+.+|..+++.|+|++|+.+|+++|+++|+++.+|+++|.+|++++ ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999998
No 39
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.30 E-value=1.8e-11 Score=112.43 Aligned_cols=101 Identities=26% Similarity=0.295 Sum_probs=93.4
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcCC
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY-LESGS--FLQAEADCTKAINLDK 529 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~l~p 529 (554)
+......+|++.+.|+.+|..+...|++++|+..|+++++++|++..++.++|.++ +..|+ +++|.+.++++++++|
T Consensus 62 l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 62 LQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 34445567899999999999999999999999999999999999999999999985 67787 5999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 530 KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 530 ~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++..+++++|.++..+|++++|++
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999975
No 40
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.25 E-value=4.6e-11 Score=104.01 Aligned_cols=95 Identities=18% Similarity=0.093 Sum_probs=88.1
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.+......+|.+...++.+|.++...|++++|+..|+++++++|+++.+++++|.++.++|++++|+..|+++++++|++
T Consensus 46 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 46 DFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 33444566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 008755 532 VKAYLRRGTAREMLG 546 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~ 546 (554)
+..+.+++.+...++
T Consensus 126 ~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 126 ASWSEIRQNAQIMVD 140 (144)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999987654
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=1e-10 Score=115.14 Aligned_cols=93 Identities=24% Similarity=0.229 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
+..+..|+++|..+...|++++|+..|+++++++|+++.+|+++|.++..+|+|++|++.|+++++++|++..+++++|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
++...|++++|++
T Consensus 141 ~l~~~g~~~eA~~ 153 (296)
T PRK11189 141 ALYYGGRYELAQD 153 (296)
T ss_pred HHHHCCCHHHHHH
Confidence 9999999999975
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.24 E-value=7.9e-11 Score=101.70 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=91.3
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
...+|++....+.+|..+++.|++++|+..|+++++.+|++..++.++|.+++.++++++|+..++++++++|++...++
T Consensus 10 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 10 LGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred HcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
++|.++...|++++|++
T Consensus 90 ~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 90 HAAECLLALGEPESALK 106 (135)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 99999999999999864
No 43
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.19 E-value=1.6e-10 Score=116.36 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=50.8
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
..+...+...|.++..++++|.++++.|+|++|+..|+++++++|++..+|+++|.+|+.+|+|++|+..|+++++++|+
T Consensus 23 ~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 23 DLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 33344444455555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHc
Q 008755 531 NVKAYLRRGTAREML 545 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~ 545 (554)
+..+...++.+...+
T Consensus 103 ~~~~~~~l~~~~~kl 117 (356)
T PLN03088 103 DSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555554433
No 44
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1e-10 Score=108.85 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=96.3
Q ss_pred HHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008755 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521 (554)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 521 (554)
.......+...+..++.-.|.++-.|.+++.+|.+.|+|+.|++.++++|.+||+++.+|..+|.+|+.+|+|++|++.|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 34445555566677777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008755 522 TKAINLDKKNVKAYLRRGTAREMLGYYK 549 (554)
Q Consensus 522 ~~al~l~p~~~~~~~~~g~~~~~~~~~~ 549 (554)
+|+|+++|+|....-++.++-.++++-.
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999988889988877776543
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=2.7e-10 Score=101.91 Aligned_cols=92 Identities=17% Similarity=0.100 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
....+...+|..|+++|++..|...++|||+.||++..+|..+|.+|.++|+.+.|-+.|++|++++|++..+++|.|.-
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 45667788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHhc
Q 008755 542 REMLGYYKEAIE 553 (554)
Q Consensus 542 ~~~~~~~~~A~~ 553 (554)
++.+|++++|.+
T Consensus 113 LC~qg~~~eA~q 124 (250)
T COG3063 113 LCAQGRPEEAMQ 124 (250)
T ss_pred HHhCCChHHHHH
Confidence 888888888753
No 46
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.8e-10 Score=100.25 Aligned_cols=93 Identities=37% Similarity=0.505 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
..+..+...||.+|.+|+|++|...|..||++.|.- +..|.|+|.|+.+++.++.|+.+|.++|+|+|.+.+++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 456778899999999999999999999999999975 458999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhcC
Q 008755 537 RRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~~ 554 (554)
+++.+|.++.+|++|++|
T Consensus 173 RRAeayek~ek~eealeD 190 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALED 190 (271)
T ss_pred HHHHHHHhhhhHHHHHHH
Confidence 999999999999999875
No 47
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.15 E-value=5.7e-11 Score=111.47 Aligned_cols=89 Identities=48% Similarity=0.630 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~ 545 (554)
.+.++||.||++|+|++|+.||.+++..+|.|+..+.|++.+|+++++|..|..+|..|+.|+-.+.++|.+++.+...+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcC
Q 008755 546 GYYKEAIEG 554 (554)
Q Consensus 546 ~~~~~A~~~ 554 (554)
|..++|.+|
T Consensus 179 g~~~EAKkD 187 (536)
T KOG4648|consen 179 GNNMEAKKD 187 (536)
T ss_pred hhHHHHHHh
Confidence 999999875
No 48
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-10 Score=117.24 Aligned_cols=95 Identities=24% Similarity=0.191 Sum_probs=82.5
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..|..+.++-++|.+|+.+|..+-|+..|+++|+++|+++++|+|+|.++-..|+..+|.++|.++|.+.|+++++.+++
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 34577888888888888888888888888888888999999999999999888999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.+|..++++++|..
T Consensus 361 gni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 361 GNIYREQGKIEEATR 375 (966)
T ss_pred HHHHHHhccchHHHH
Confidence 999999998888863
No 49
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.10 E-value=3e-10 Score=114.31 Aligned_cols=98 Identities=21% Similarity=0.140 Sum_probs=79.8
Q ss_pred ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 535 (554)
..+..|+-+.++.++|.+|.++|++++|+.+|+.+|+++|.++++|+|+|..|-.+|+...|+++|.+||.++|.+.+++
T Consensus 380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 34456677778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHhc
Q 008755 536 LRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 536 ~~~g~~~~~~~~~~~A~~ 553 (554)
.++|.+|...|+..+|++
T Consensus 460 sNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 460 SNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred hhHHHHhhccCCcHHHHH
Confidence 888888888888777764
No 50
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.09 E-value=3.7e-10 Score=83.80 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=60.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 468 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
+.+|..+++.|+|++|+..|+++++.+|++..+++.+|.+++++|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.07 E-value=7.3e-10 Score=120.84 Aligned_cols=91 Identities=41% Similarity=0.567 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
..+..+.++|+.+++.|+|++|+..|+++|+++|+ +..|.++|.||+++|+|++|+.+|+++++++|++.++++++|.+
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34667899999999999999999999999999996 78999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHhc
Q 008755 542 REMLGYYKEAIE 553 (554)
Q Consensus 542 ~~~~~~~~~A~~ 553 (554)
|..+|++++|+.
T Consensus 204 ~~~lg~~~eA~~ 215 (615)
T TIGR00990 204 YDGLGKYADALL 215 (615)
T ss_pred HHHcCCHHHHHH
Confidence 999999999975
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.02 E-value=1.6e-09 Score=116.24 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
|+++.++..+|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..++++++++|.+...++.++.
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHcCCHHHH
Q 008755 541 AREMLGYYKEA 551 (554)
Q Consensus 541 ~~~~~~~~~~A 551 (554)
+++..|++++|
T Consensus 415 ~~~~~g~~eeA 425 (553)
T PRK12370 415 ITYYHTGIDDA 425 (553)
T ss_pred HHHhccCHHHH
Confidence 44444444444
No 53
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.5e-09 Score=105.44 Aligned_cols=92 Identities=34% Similarity=0.455 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
.+....+.|+.+|+.|+|..|...|++|+..-.+. ..++.|++.||+++++|.+|+..|.++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 45567788999999999999999999988653211 246899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755 528 DKKNVKAYLRRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 528 ~p~~~~~~~~~g~~~~~~~~~~~A~~~ 554 (554)
+|+|.+++|++|.++..+++|+.|+.|
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~d 313 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDD 313 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHH
Confidence 999999999999999999999998754
No 54
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.8e-10 Score=107.00 Aligned_cols=96 Identities=35% Similarity=0.589 Sum_probs=91.1
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
..++..+.+.+.||.++++|+|.+|.++|+.+|.+||++ +..|.|+|.++..+|+.++|+.+|+.+++|+|.+.++
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 456888999999999999999999999999999999986 5679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHhcC
Q 008755 535 YLRRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~~ 554 (554)
+..+|.|+..+++|++|++|
T Consensus 324 ll~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVED 343 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 55
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.99 E-value=3.1e-09 Score=107.01 Aligned_cols=88 Identities=42% Similarity=0.605 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~ 545 (554)
.+...|+.++..|+|++|+.+|+++|+++|++..+|+++|.+|+++|+|++|+.+++++++++|++..+|+++|.+|..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhc
Q 008755 546 GYYKEAIE 553 (554)
Q Consensus 546 ~~~~~A~~ 553 (554)
|+|++|+.
T Consensus 84 g~~~eA~~ 91 (356)
T PLN03088 84 EEYQTAKA 91 (356)
T ss_pred CCHHHHHH
Confidence 99999975
No 56
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.98 E-value=4.4e-09 Score=114.74 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=53.1
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
+|.....|+.+|..+...|++++|+..|+++++++|+++.+|+++|.+++.+|+|++|+.+|+++++++|++..+++++|
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHh
Q 008755 540 TAREMLGYYKEAI 552 (554)
Q Consensus 540 ~~~~~~~~~~~A~ 552 (554)
.++..+|++++|+
T Consensus 441 ~~~~~~g~~~eA~ 453 (615)
T TIGR00990 441 VTQYKEGSIASSM 453 (615)
T ss_pred HHHHHCCCHHHHH
Confidence 5555555555554
No 57
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=1.5e-09 Score=110.69 Aligned_cols=100 Identities=20% Similarity=0.107 Sum_probs=94.0
Q ss_pred ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
..++...|.+..+|+-+|.+|+++++++.|+-+|+||++++|.+.......|..+.++|+.++|++.|++|+.++|.++.
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 33445567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
..|.++.++..+++|++|++
T Consensus 559 ~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred hHHHHHHHHHhhcchHHHHH
Confidence 99999999999999999974
No 58
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=1.6e-09 Score=101.92 Aligned_cols=95 Identities=23% Similarity=0.252 Sum_probs=92.1
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
++.+.+.++++|+.++..|++..|+..|.+|++.||++..+++.+|.+|+.+|+-+.|+.++++.|++.|++..+...+|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHhcC
Q 008755 540 TAREMLGYYKEAIEG 554 (554)
Q Consensus 540 ~~~~~~~~~~~A~~~ 554 (554)
.++.++|++++|.+|
T Consensus 114 ~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 114 VVLLKQGELEQAEAD 128 (504)
T ss_pred hhhhhcccHHHHHHH
Confidence 999999999999875
No 59
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.97 E-value=1.2e-09 Score=85.66 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=69.6
Q ss_pred HccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 476 KDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 476 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+|+|++|+..|+++++.+|. +..+++++|.||+++|+|++|+..+++ ++.++.+...++.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 468999999999999999995 567788899999999999999999999 88999999999999999999999999985
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.5e-09 Score=109.06 Aligned_cols=92 Identities=17% Similarity=0.253 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
.+++.+.-+|..|.-.|+|++|+.+|+.||+.+|++...|+.+|-.+.--.+.++|+..|.+|++|.|.+..+.|++|++
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 57889999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHcCCHHHHhc
Q 008755 542 REMLGYYKEAIE 553 (554)
Q Consensus 542 ~~~~~~~~~A~~ 553 (554)
+..+|.|++|++
T Consensus 508 ~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 508 CMNLGAYKEAVK 519 (579)
T ss_pred hhhhhhHHHHHH
Confidence 999999999975
No 61
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.94 E-value=1.2e-08 Score=85.65 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLR 537 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~ 537 (554)
++.++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++++.++|++|+..|++++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578889999999999999999999999988876 5688889999999999999999999999998875 678899
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|.++..++++++|++
T Consensus 82 ~~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 82 LGMSLQELGDKEKAKA 97 (119)
T ss_pred HHHHHHHhCChHHHHH
Confidence 9999999999988864
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=98.94 E-value=6.3e-09 Score=111.60 Aligned_cols=101 Identities=15% Similarity=0.014 Sum_probs=90.4
Q ss_pred cccccccChhhHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 523 (554)
+.+.....|+++..+..+|.+++.. +++++|+..++++++++|+++.++..+|.++...|++++|+..|++
T Consensus 284 ~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 363 (553)
T PRK12370 284 LTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQ 363 (553)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3344555678888898888876533 4589999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 524 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++++|+++.+++++|.++..+|++++|++
T Consensus 364 Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 364 ANLLSPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999975
No 63
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.7e-09 Score=97.01 Aligned_cols=92 Identities=38% Similarity=0.487 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
..+..+.+.|+.+|...+|..|+.+|.++|.++|..+.+|.|++.||+++++|+.+..++.++++++|+..+++|.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 34667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHhc
Q 008755 542 REMLGYYKEAIE 553 (554)
Q Consensus 542 ~~~~~~~~~A~~ 553 (554)
+.+.+.|++|+.
T Consensus 88 ~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 88 LLQSKGYDEAIK 99 (284)
T ss_pred HHhhccccHHHH
Confidence 999999999874
No 64
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=6.5e-10 Score=113.37 Aligned_cols=92 Identities=23% Similarity=0.175 Sum_probs=52.6
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.+..++.|...||+|..+++++.|+++|++||++||++..+|..+|.=+....+|++|..+|++||..+|++..|||.+|
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 34556666666666666666666666666666666655555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHH
Q 008755 540 TAREMLGYYKEA 551 (554)
Q Consensus 540 ~~~~~~~~~~~A 551 (554)
.+|.++++++.|
T Consensus 497 ~vy~Kqek~e~A 508 (638)
T KOG1126|consen 497 TVYLKQEKLEFA 508 (638)
T ss_pred hheeccchhhHH
Confidence 555555554444
No 65
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=8.3e-09 Score=94.54 Aligned_cols=108 Identities=17% Similarity=0.052 Sum_probs=69.7
Q ss_pred HHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 445 ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
....+...+.......|.+.+.|..+|-+|.+.|++++|...|.|++++.|+++.+++|+|..|+-.|+++.|...+.++
T Consensus 115 ~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 33333444455555566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 525 INLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 525 l~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
....+.+..+..+++.+...+|++++|.
T Consensus 195 ~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 195 YLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 6666666666666666666666666664
No 66
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.1e-09 Score=99.03 Aligned_cols=96 Identities=24% Similarity=0.158 Sum_probs=90.0
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~~ 534 (554)
..+|++++-|..+|..|+..|++..|+..|.+|+++.|++++++..+|.+++...+ -.++.+.+++++++||.+..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 34689999999999999999999999999999999999999999999999886653 789999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHhc
Q 008755 535 YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~ 553 (554)
.+.+|..+.++|+|.+|+.
T Consensus 230 l~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred HHHHHHHHHHcccHHHHHH
Confidence 9999999999999999974
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=7.8e-09 Score=101.72 Aligned_cols=101 Identities=18% Similarity=0.066 Sum_probs=85.5
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.+.+.+..+|+++..|+.+|..+...|++++|+..|+++++++|++..+|.++|.+++..|++++|+++++++++++|++
T Consensus 86 ~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 86 DFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34455566789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+...+.+ ......+++++|++
T Consensus 166 ~~~~~~~-~l~~~~~~~~~A~~ 186 (296)
T PRK11189 166 PYRALWL-YLAESKLDPKQAKE 186 (296)
T ss_pred HHHHHHH-HHHHccCCHHHHHH
Confidence 7422222 22345567777754
No 68
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.7e-09 Score=98.63 Aligned_cols=92 Identities=38% Similarity=0.582 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
+.++.+.+.||.+|+.++|..|+..|.+.|... |+ +...|+|+|-|.+.+|+|..|+.+|.++++++|.+.+++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 578899999999999999999999999999874 33 46789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
-+.|+..++++.+|++
T Consensus 159 ~Akc~~eLe~~~~a~n 174 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVN 174 (390)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999887764
No 69
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.91 E-value=8.5e-09 Score=115.62 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=91.6
Q ss_pred ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
......+|+ ...+.++|.++.+.|++++|+..|+++++++|+++.+++++|.++.++|++++|++.|+++++++|+++.
T Consensus 600 ~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 600 TRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 333444565 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++++|.++..+|++++|++
T Consensus 679 a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999874
No 70
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=1.3e-08 Score=80.84 Aligned_cols=88 Identities=40% Similarity=0.557 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~ 545 (554)
.++.+|..++..|++++|+..++++++..|++..++..+|.++...+++++|++.+++++++.|.+...++.++.++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhc
Q 008755 546 GYYKEAIE 553 (554)
Q Consensus 546 ~~~~~A~~ 553 (554)
+++++|.+
T Consensus 82 ~~~~~a~~ 89 (100)
T cd00189 82 GKYEEALE 89 (100)
T ss_pred HhHHHHHH
Confidence 99998864
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.8e-09 Score=105.37 Aligned_cols=89 Identities=44% Similarity=0.555 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
......||..|..|+|+.|+.+|.++|.++|.|-..|+|+..+|.++++|++|+++..+.++++|+++++|.++|.++..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHhc
Q 008755 545 LGYYKEAIE 553 (554)
Q Consensus 545 ~~~~~~A~~ 553 (554)
+|+|++|+.
T Consensus 83 lg~~~eA~~ 91 (539)
T KOG0548|consen 83 LGDYEEAIL 91 (539)
T ss_pred cccHHHHHH
Confidence 999999974
No 72
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.90 E-value=1.9e-08 Score=90.62 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=83.3
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 535 (554)
..+..+..++.+|..+...|++++|+.+|+++++..|+. ..++.++|.++..+|+|++|+..++++++++|++..++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 346788899999999999999999999999999987763 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHH
Q 008755 536 LRRGTAREMLGYYK 549 (554)
Q Consensus 536 ~~~g~~~~~~~~~~ 549 (554)
+.+|.++..+++..
T Consensus 110 ~~lg~~~~~~g~~~ 123 (172)
T PRK02603 110 NNIAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHHHcCChH
Confidence 99999999988743
No 73
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=1.8e-08 Score=90.41 Aligned_cols=92 Identities=16% Similarity=0.072 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
...+..++..|..++..|+|++|+..|++++.+.|+. +.+|.++|.+|..+|++++|+..|+++++++|.+...+++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 4568889999999999999999999999999997763 4589999999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCHHHHh
Q 008755 538 RGTARE-------MLGYYKEAI 552 (554)
Q Consensus 538 ~g~~~~-------~~~~~~~A~ 552 (554)
+|.++. .+|++++|+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHH
Confidence 999998 777877664
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=2.1e-08 Score=108.33 Aligned_cols=97 Identities=12% Similarity=-0.078 Sum_probs=61.2
Q ss_pred ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 535 (554)
..+..|++..++.+++..+.+.+++++|+..++++++.+|+++.+++.+|.++.++|+|++|+..|++++..+|++.+++
T Consensus 112 ~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~ 191 (694)
T PRK15179 112 IHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY 191 (694)
T ss_pred HHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence 34445566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHh
Q 008755 536 LRRGTAREMLGYYKEAI 552 (554)
Q Consensus 536 ~~~g~~~~~~~~~~~A~ 552 (554)
..+|.++...|+.++|.
T Consensus 192 ~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 192 VGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHHHHHHcCCHHHHH
Confidence 66666666666666654
No 75
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.86 E-value=1.5e-08 Score=77.04 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=65.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 471 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
...++++++|++|+..++++++++|+++..|..+|.+|+++|+|.+|+++++++++++|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999999888776553
No 76
>PRK15331 chaperone protein SicA; Provisional
Probab=98.85 E-value=3.6e-08 Score=84.90 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA 507 (554)
Q Consensus 428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 507 (554)
...-.++..+...+....... ......++..+..+..|-.++++|++++|...|+-....||.++..+..+|.|
T Consensus 7 ~~~~~~~~~i~~al~~G~tlk------~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~ 80 (165)
T PRK15331 7 VSEERVAEMIWDAVSEGATLK------DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAV 80 (165)
T ss_pred hhHHHHHHHHHHHHHCCCCHH------HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344455555555555433221 12233457788899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+..+++|++|+..|..+..++++++..+|..|.|+..+|+.++|+.
T Consensus 81 ~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 81 CQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 9999999999999999999999999999999999999999999874
No 77
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=1e-08 Score=110.62 Aligned_cols=97 Identities=4% Similarity=-0.045 Sum_probs=90.5
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....++++++++.+|.+..+.|++++|+..++++++++|++..++.+++.++.+++++++|+..+++++..+|++..+++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
.+|.++.++|+|++|++
T Consensus 159 ~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 159 LEAKSWDEIGQSEQADA 175 (694)
T ss_pred HHHHHHHHhcchHHHHH
Confidence 99999999999999975
No 78
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.84 E-value=4.8e-08 Score=79.32 Aligned_cols=92 Identities=24% Similarity=0.269 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRR 538 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~ 538 (554)
....+-..|..+...|+.++|++.|.++|.+.|..+.+|+|++++|...|+.++|+.++.+++++.-+. .++|..+
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 344566678889999999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred HHHHHHcCCHHHHhcC
Q 008755 539 GTAREMLGYYKEAIEG 554 (554)
Q Consensus 539 g~~~~~~~~~~~A~~~ 554 (554)
|..|..+|+.+.|..|
T Consensus 122 g~lyRl~g~dd~AR~D 137 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARAD 137 (175)
T ss_pred HHHHHHhCchHHHHHh
Confidence 9999999999998764
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.84 E-value=3.9e-08 Score=92.63 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=89.6
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-- 528 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-- 528 (554)
..+.......|.+...+..+|..++..|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++..
T Consensus 52 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 131 (234)
T TIGR02521 52 ENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY 131 (234)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 334444556678888999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 529 KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 529 p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+.....++++|.++...|++++|.+
T Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 132 PQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 4567788999999999999999864
No 80
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=2.8e-08 Score=97.84 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=84.0
Q ss_pred ccccccccChhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF--LQAEADCTKAINLD 528 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~l~ 528 (554)
.....+..+|++..+|..++.++...+ ++++++..++++++.+|++..+|++++.++.++++. ++++.+++++++++
T Consensus 59 lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d 138 (320)
T PLN02789 59 LTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD 138 (320)
T ss_pred HHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence 344556677888888888888888887 578888888888888888888888888888888763 67888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 529 KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 529 p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|+|..+|++++.++..+++++++++
T Consensus 139 pkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 139 AKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHH
Confidence 8888888888888888888888765
No 81
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.5e-08 Score=91.23 Aligned_cols=104 Identities=21% Similarity=0.277 Sum_probs=90.4
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cC----------CCHHHHHHHHHHHHHcC
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NG----------NNATYYSNRAAAYLESG 512 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p----------~~~~~~~~~a~~~~~~~ 512 (554)
..|+....+.-+....+...||.+|+.|+|++|...|+.||.. .| .....+.|.++|++..+
T Consensus 165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~ 244 (329)
T KOG0545|consen 165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE 244 (329)
T ss_pred ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence 4555555555677788999999999999999999999999832 23 34567999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755 513 SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 513 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~ 554 (554)
+|-++++.+...|..+|.|.++||.+|.+.....+..+|.+|
T Consensus 245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D 286 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKAD 286 (329)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHH
Confidence 999999999999999999999999999999999999988765
No 82
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.84 E-value=1.1e-08 Score=76.55 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=61.6
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 474 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
+++.|+|++|+..|+++++.+|++..++..++.||++.|++++|.+.+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999998777766654
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=3.2e-08 Score=88.89 Aligned_cols=99 Identities=16% Similarity=0.035 Sum_probs=50.4
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKK 530 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~ 530 (554)
+....+..|+...+|..++..|.+.|+.+.|.+.|++|+.++|++.++++|.|-.+..+|+|++|.+.+++|+.. .+.
T Consensus 58 lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~ 137 (250)
T COG3063 58 LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE 137 (250)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC
Confidence 333344445555555555555555555555555555555555555555555555555555555555555555542 112
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 008755 531 NVKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A 551 (554)
....+-|+|.|..++|+.+.|
T Consensus 138 ~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 138 PSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred cchhhhhhHHHHhhcCCchhH
Confidence 233444555555555554444
No 84
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.80 E-value=2e-08 Score=100.03 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=68.5
Q ss_pred ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLD 528 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l~ 528 (554)
....+|+++..|+++|..+++.|+|++|+..|+++|+++|++.++ |+|+|.||.++|++++|++++++|+++.
T Consensus 67 ~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 67 GSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999999999999999865 9999999999999999999999999983
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=7e-08 Score=88.53 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=90.6
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
..++++...+..+|...+.+|+|.+|+..++++.+++|++.++|+.+|.+|.++|++++|-..|.+++++.|+++..+.|
T Consensus 94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nN 173 (257)
T COG5010 94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANN 173 (257)
T ss_pred ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhh
Confidence 34567777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|+.|.-.|++++|..
T Consensus 174 lgms~~L~gd~~~A~~ 189 (257)
T COG5010 174 LGMSLLLRGDLEDAET 189 (257)
T ss_pred HHHHHHHcCCHHHHHH
Confidence 9999999999999864
No 86
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.6e-08 Score=99.55 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=92.0
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
..++.....+|++++.|+.+|+.++-.++|++|+..|+|+++++|++.-+|.++|.+.++++++++++..++.+++..|+
T Consensus 381 ~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~ 460 (606)
T KOG0547|consen 381 KDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN 460 (606)
T ss_pred HHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445556678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++|...|.++..++++++|++
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHH
Confidence 99999999999999999988864
No 87
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=4.7e-08 Score=106.81 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=47.3
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..|+++..+..+|..+.+.|++++|+..|+++++++|++..++.++|.+|.++|++++|++.|+++++.+|++...++.+
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555555555555555444444444
Q ss_pred HHHHHHcCCHHHHh
Q 008755 539 GTAREMLGYYKEAI 552 (554)
Q Consensus 539 g~~~~~~~~~~~A~ 552 (554)
|.++..+|++++|+
T Consensus 359 a~al~~~G~~deA~ 372 (656)
T PRK15174 359 AAALLQAGKTSEAE 372 (656)
T ss_pred HHHHHHCCCHHHHH
Confidence 55555555555544
No 88
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=4.1e-08 Score=107.23 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=79.3
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
..+.......|+.++.++.+|...+..|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..|+++++++|+
T Consensus 63 ~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~ 142 (656)
T PRK15174 63 TLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG 142 (656)
T ss_pred HHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 33344445566777778888887788888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+..++..++.++..+|++++|++
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHH
Confidence 88888888888888888777753
No 89
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.2e-08 Score=95.51 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=96.7
Q ss_pred HhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
.+++..+..++..+|.+-.+|+-+|+.|-..+.+.=|+-+|+||+++.|+++..|..+|.||.++++.++|+.+|.+++.
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 44556666777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 527 LDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 527 l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..-.+..+++.+|..|.+++++++|..
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 988888999999999999999998853
No 90
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=9.7e-08 Score=82.26 Aligned_cols=82 Identities=17% Similarity=0.054 Sum_probs=75.1
Q ss_pred ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
.......|.+...++.+|..++..|++++|+..|+++++.+|++...++++|.+|..+|++++|+..++++++++|++..
T Consensus 41 ~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 41 QLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33344567889999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q 008755 534 AY 535 (554)
Q Consensus 534 ~~ 535 (554)
..
T Consensus 121 ~~ 122 (135)
T TIGR02552 121 YS 122 (135)
T ss_pred HH
Confidence 54
No 91
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.72 E-value=2.5e-08 Score=74.83 Aligned_cols=58 Identities=40% Similarity=0.533 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHhc
Q 008755 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIE 553 (554)
Q Consensus 496 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~-~~~~A~~ 553 (554)
+++..|.++|.+++..++|++|+..|+++++++|+++.+++++|.++..+| ++++|++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH
Confidence 367899999999999999999999999999999999999999999999999 7999975
No 92
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.72 E-value=1.8e-07 Score=88.07 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=88.1
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
......|.+...+..+|..++..|++++|+..|+++++.. +.....+.++|.++...|++++|+..++++++.+|++.
T Consensus 90 ~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 90 RALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence 3344456777889999999999999999999999999864 45677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++.++.++...|++++|++
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999864
No 93
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.71 E-value=2.1e-07 Score=77.19 Aligned_cols=89 Identities=20% Similarity=0.047 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRR 538 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~ 538 (554)
.++|+.+..+-..|+.++|+..|+++++..... ..++.++|.+|..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999975543 568999999999999999999999999999898 88888999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
+.++..+|++++|++
T Consensus 82 Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 82 ALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHCCCHHHHHH
Confidence 999999999999975
No 94
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.71 E-value=1.2e-07 Score=81.33 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=70.3
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
......|.+...|+++|.++...|+|++|+..|.+++.++|+++.++.+.|.||+.+|+.++|.+.++.++...-.
T Consensus 60 ~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 60 LLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 3344567899999999999999999999999999999999999999999999999999999999999999998733
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=1e-07 Score=90.66 Aligned_cols=94 Identities=23% Similarity=0.264 Sum_probs=85.0
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK--- 533 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~--- 533 (554)
.+..+..++.+|..+++.|+|++|+..|+++++.+|+++ .+++.+|.+|++++++++|+..|+++++.+|++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 356788999999999999999999999999999999875 68899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHc--------CCHHHHhc
Q 008755 534 AYLRRGTAREML--------GYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~--------~~~~~A~~ 553 (554)
+++.+|.++... +++++|++
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~ 136 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFE 136 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 799999999876 67777764
No 96
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.67 E-value=1e-07 Score=93.38 Aligned_cols=93 Identities=25% Similarity=0.216 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH----------------------------------HHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----------------------------------YSNRAA 506 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~~a~ 506 (554)
+.++..|..+|..+.+.|++++|+..|+++++++|++..+ +..+|.
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4677888889999999999999999999999888876543 566788
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 507 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|+.+|++++|+.+++++++.+|+++..+..+|.++...|++++|.+
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred Hhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888999999999999999999999999999999999999888864
No 97
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.65 E-value=7.5e-08 Score=108.13 Aligned_cols=102 Identities=7% Similarity=-0.043 Sum_probs=94.7
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.+.......|+++..+.++|..+.+.|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 34445566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
....+..|.++....+++.|.+
T Consensus 711 a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 711 ALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred chhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999988888765
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=1.9e-07 Score=92.66 Aligned_cols=101 Identities=20% Similarity=0.121 Sum_probs=94.2
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.+...+..+|+++-.+...+.+++..++.++|++.+++++.++|+....+.++|++|++.|++++|+..+...+.-+|++
T Consensus 328 ~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 328 LLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 34445667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHh
Q 008755 532 VKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~~A~ 552 (554)
+..|..++.+|..+|+..++.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred chHHHHHHHHHHHhCchHHHH
Confidence 999999999999999887765
No 99
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.9e-07 Score=88.30 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=91.6
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
-+|+...+|.-.|-.|+..++...|+..|++|++++|.+..+|+.+|++|..++-..=|+=+|++|+++.|++...+-.+
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.||.++++.++|++
T Consensus 439 G~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIK 453 (559)
T ss_pred HHHHHHhccHHHHHH
Confidence 999999999999986
No 100
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.59 E-value=6.2e-07 Score=85.72 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
+.+++.+|..|+..|+|++|+..|+++++..|+ .+++++.+|.+|..+|++++|...|+++++..|++..+
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 456666666666666666666666666666555 35566666666666666666666666666666665543
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=5.6e-07 Score=85.61 Aligned_cols=92 Identities=18% Similarity=0.114 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCC
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLES--------GSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~l~p~ 530 (554)
....+++.+|..+++.|++++|+..|+++++.+|+++. +++.+|.++++. +++++|++.++++++.+|+
T Consensus 68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 34578899999999999999999999999999998776 799999999987 7899999999999999999
Q ss_pred CHHHH-----------------HHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAY-----------------LRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~-----------------~~~g~~~~~~~~~~~A~~ 553 (554)
+..++ +.+|..+...|++++|+.
T Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 148 SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 86542 466888889999998864
No 102
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.59 E-value=2.2e-08 Score=99.22 Aligned_cols=91 Identities=46% Similarity=0.599 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
+..+.+.++.++..++|+.|+..|.|||+++|+.+.+|.++++++.+.++|..|+.++.+|++++|.+.++|+++|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHhcC
Q 008755 544 MLGYYKEAIEG 554 (554)
Q Consensus 544 ~~~~~~~A~~~ 554 (554)
.++++.+|+.+
T Consensus 84 ~l~~~~~A~~~ 94 (476)
T KOG0376|consen 84 ALGEFKKALLD 94 (476)
T ss_pred hHHHHHHHHHH
Confidence 99999998753
No 103
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.8e-07 Score=89.80 Aligned_cols=88 Identities=23% Similarity=0.228 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
...+.+++.++.+.++|.+|+..++++|+++|+|..++|.+|.+++.+++|+.|+.+|+++++++|+|..+...+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred HcCCHHHH
Q 008755 544 MLGYYKEA 551 (554)
Q Consensus 544 ~~~~~~~A 551 (554)
+..++++.
T Consensus 337 k~~~~~~k 344 (397)
T KOG0543|consen 337 KIREYEEK 344 (397)
T ss_pred HHHHHHHH
Confidence 66665543
No 104
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.56 E-value=4e-07 Score=106.28 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=86.7
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------------------
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA----------------------- 507 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~----------------------- 507 (554)
..+.+....+|++..+++.+|.+++..|++++|+..|+++++++|++..++..++.+
T Consensus 372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 344445555678888999999999999999999999999999999987776555443
Q ss_pred -------------------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 508 -------------------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 508 -------------------~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+...|++++|++.|+++++++|+++.+++.+|.+|..+|++++|++
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4467899999999999999999999999999999999999999874
No 105
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.56 E-value=2e-07 Score=71.79 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 528 (554)
|..+..+.++|..++..|+|++|+..|++++++. |.....++++|.+|..+|++++|++.+++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5678899999999999999999999999999762 2235689999999999999999999999999863
No 106
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.54 E-value=7.2e-07 Score=104.23 Aligned_cols=95 Identities=18% Similarity=0.125 Sum_probs=90.0
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
.+|.++..++.+|..+.+.|++++|+..|+++++.+|++..++.+++.+|...|++++|++.++++++.+|++..++..+
T Consensus 598 ~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l 677 (1157)
T PRK11447 598 QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV 677 (1157)
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.++..+|++++|++
T Consensus 678 a~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 678 ALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHHHhCCCHHHHHH
Confidence 999999999999975
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=5.8e-07 Score=82.63 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=71.0
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCC--HHHHhc
Q 008755 477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-EMLGY--YKEAIE 553 (554)
Q Consensus 477 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~-~~~~~--~~~A~~ 553 (554)
.++.++++..|+++++.+|++.+.|..+|.+|..+|++++|+..|+++++++|++...++.+|.++ ...|+ +++|++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999985 67777 466653
No 108
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=83.47 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
..++..++++|+.|-..|-+.-|...|.+++.+.|+.+++++.+|..+...|+|+.|.+.++-.+++||.+-.++.|+|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhcC
Q 008755 541 AREMLGYYKEAIEG 554 (554)
Q Consensus 541 ~~~~~~~~~~A~~~ 554 (554)
+++..|+++-|.+|
T Consensus 142 ~~YY~gR~~LAq~d 155 (297)
T COG4785 142 ALYYGGRYKLAQDD 155 (297)
T ss_pred eeeecCchHhhHHH
Confidence 99999999988764
No 109
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=1.5e-06 Score=72.70 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....++.+|..+++.|++++|+..|++++..+|++ ..+++++|.++.+++++++|+..++++++..|++..+.-
T Consensus 38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 38 APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 36789999999999999999999999999998885 678999999999999999999999999999999876543
No 110
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=2.2e-06 Score=84.59 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=82.6
Q ss_pred cccChhhHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
+..+|++..+|..++.++.+.+++ ++++..++++|+.+|++..+|++++.++..+++|++++++++++|+++|.|..+
T Consensus 99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 345678999999999999888874 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 008755 535 YLRRGTAREML 545 (554)
Q Consensus 535 ~~~~g~~~~~~ 545 (554)
|++++.++...
T Consensus 179 W~~R~~vl~~~ 189 (320)
T PLN02789 179 WNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHhc
Confidence 99999998776
No 111
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.47 E-value=1.6e-06 Score=96.71 Aligned_cols=91 Identities=14% Similarity=-0.035 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
....+..++..+...|++++|+..|+++++..|++..++.++|.++...|++++|++.++++++++|++..+++.+|.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHhc
Q 008755 543 EMLGYYKEAIE 553 (554)
Q Consensus 543 ~~~~~~~~A~~ 553 (554)
..++++++|++
T Consensus 438 l~~~~~~~A~~ 448 (765)
T PRK10049 438 LDLQEWRQMDV 448 (765)
T ss_pred HHhCCHHHHHH
Confidence 99999999875
No 112
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.47 E-value=1.2e-06 Score=97.74 Aligned_cols=102 Identities=11% Similarity=-0.035 Sum_probs=73.0
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
..+.......|.++..+..++..+...|++++|+..++++++.+|++.. +..+|.++...|++++|+..++++++++|+
T Consensus 70 ~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 70 TLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3344444555666777777777777777777777777777777777777 777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+..+++.++.++...++.++|++
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHH
Confidence 77777777777777777776653
No 113
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.45 E-value=4.6e-07 Score=90.42 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=58.4
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHhc
Q 008755 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA---YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 493 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~---~~~~g~~~~~~~~~~~A~~ 553 (554)
.+|+++.+|+|+|.+|+++|+|++|+..|+++|+++|++.++ ||++|.+|..+|++++|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 589999999999999999999999999999999999999865 9999999999999999986
No 114
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.43 E-value=3.8e-06 Score=86.43 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLRRGTAREM 544 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~g~~~~~ 544 (554)
.+..+|..+.+.|++++|+..|+++++.+|++..+++.+|.+|.+.|++++|++.++++++++|++ ..++..++.+|..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 344555555556666666666666666666555555666666666666666666666666555544 2344555555555
Q ss_pred cCCHHHHh
Q 008755 545 LGYYKEAI 552 (554)
Q Consensus 545 ~~~~~~A~ 552 (554)
+|++++|+
T Consensus 262 ~g~~~~A~ 269 (389)
T PRK11788 262 LGDEAEGL 269 (389)
T ss_pred cCCHHHHH
Confidence 55555554
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=2.6e-06 Score=74.30 Aligned_cols=91 Identities=20% Similarity=0.105 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
-...+.+.++..++..|++++|+..|+++++..|+. ..+...++.+++..|+|++|+..+++ +.-.+-.+.++..+
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHH
Confidence 447788999999999999999999999999987665 45788999999999999999999977 34444556778889
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.+|...|++++|++
T Consensus 125 Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 125 GDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHCCCHHHHHH
Confidence 999999999999974
No 116
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.41 E-value=2.4e-06 Score=87.89 Aligned_cols=94 Identities=27% Similarity=0.302 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
.+.+...+..++..+.+.|++++|+..|+++++.+|.+. ..+..+|.++.+.+++++|+..++++++++|++..+
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence 456778899999999999999999999999999988753 356789999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHhc
Q 008755 535 YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~ 553 (554)
++.+|.++...|++++|++
T Consensus 217 ~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIE 235 (389)
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999975
No 117
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.39 E-value=2.1e-06 Score=97.96 Aligned_cols=95 Identities=18% Similarity=0.090 Sum_probs=73.2
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
...|+++..+..++..+.+.|+ .+|+..|++++++.|+++..+.++|.+++.+|++++|+..++++++++|.++..+++
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 876 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH 876 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 3445666667777777777777 667777777777777777777778888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
++.++...|++++|++
T Consensus 877 l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 877 LALALLATGRKAEARK 892 (899)
T ss_pred HHHHHHHcCCHHHHHH
Confidence 8888888888888764
No 118
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.37 E-value=4e-06 Score=88.91 Aligned_cols=110 Identities=18% Similarity=0.120 Sum_probs=100.2
Q ss_pred HHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008755 444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (554)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 523 (554)
.....+...+...+...|..+.+|+.+|.+|-++|+.++++...-.|-.++|++.+.|..++....++|++++|.-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44444445556667788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 524 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
||+++|.+.+.+++++..|.++|++..|..
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence 999999999999999999999999988864
No 119
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.36 E-value=4.6e-06 Score=70.43 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AY 535 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~ 535 (554)
..+..++..|...++.|+|++|++.|++....-|. -..+...++.+|++.++|++|+..+++-|+|+|.++. ++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34678999999999999999999999999988776 3578999999999999999999999999999998754 78
Q ss_pred HHHHHHHHHcCC
Q 008755 536 LRRGTAREMLGY 547 (554)
Q Consensus 536 ~~~g~~~~~~~~ 547 (554)
|.+|.+++.+..
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 120
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.36 E-value=3.1e-06 Score=85.90 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=85.1
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----KA 534 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----~~ 534 (554)
..+.....+..+|..+...|++++|+..++++++++|++..++..+|.+|++.|++++|++.++++++..|... ..
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 34667778888999999999999999999999999999999999999999999999999999999999987432 35
Q ss_pred HHHHHHHHHHcCCHHHHhc
Q 008755 535 YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~ 553 (554)
++.++.++..+|++++|++
T Consensus 189 ~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 189 WWHLALFYLERGDYEAALA 207 (355)
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 6789999999999999864
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.36 E-value=2.3e-06 Score=90.68 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.++.+.+++.+.++.+.|+|++|+.+|..++...+. +..+|+.+|.||.+++.|++|+++|++++.++|++..+...++
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 467889999999999999999999999999887765 4679999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++.++|+.|+|++
T Consensus 491 sl~~~~g~~EkalE 504 (895)
T KOG2076|consen 491 SLYQQLGNHEKALE 504 (895)
T ss_pred HHHHhcCCHHHHHH
Confidence 99999999999975
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=6.6e-06 Score=82.80 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
++....++..++..++..+|+..++++|+.+|.++..+..-+..+++.++|+.|+..+++++++.|++.+.|+.++.+|.
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34566688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHhc
Q 008755 544 MLGYYKEAIE 553 (554)
Q Consensus 544 ~~~~~~~A~~ 553 (554)
++|++++|+.
T Consensus 280 ~~~d~e~ALl 289 (395)
T PF09295_consen 280 QLGDFENALL 289 (395)
T ss_pred hcCCHHHHHH
Confidence 9999999973
No 123
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.34 E-value=4.1e-06 Score=95.56 Aligned_cols=94 Identities=20% Similarity=0.132 Sum_probs=67.9
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..|++...+..++..++..|++++|+..++++++.+|.+..++..+|.+++..|++++|+..|+++++++|++...++.+
T Consensus 154 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 233 (899)
T TIGR02917 154 IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLAL 233 (899)
T ss_pred cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34555666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHh
Q 008755 539 GTAREMLGYYKEAI 552 (554)
Q Consensus 539 g~~~~~~~~~~~A~ 552 (554)
+.++...|++++|.
T Consensus 234 ~~~~~~~g~~~~A~ 247 (899)
T TIGR02917 234 ATILIEAGEFEEAE 247 (899)
T ss_pred HHHHHHcCCHHHHH
Confidence 77777777777664
No 124
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.30 E-value=3.9e-06 Score=87.52 Aligned_cols=94 Identities=27% Similarity=0.195 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA--DCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~l~p~~~~~~~~ 537 (554)
.+-.+..|+..|..+...|++.+|...|..|+.+||++......+|.++.+.|+-.-|.. .+..+++++|.++++||+
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 466788999999999999999999999999999999999999999999999998666666 999999999999999999
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|.++.++|+.++|.+
T Consensus 760 LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHHccchHHHHH
Confidence 9999999999998864
No 125
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=7.3e-06 Score=72.02 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
....-.|.++|.++++.++++.|+..+.|+|+++|.+..++..+|.+|.++.+|++|+.+|.+.++++|.+.++.-.
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999998776443
No 126
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.30 E-value=1.1e-05 Score=72.58 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcC
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--------------FLQAEADCTKAINLD 528 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~l~ 528 (554)
....+..+|..+.+.|++++|+..|+++++.+|++...+.++|.+|..+++ +++|++.++++++++
T Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999999999999999999999999887 788999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 008755 529 KKNVKAYLRRGTAREMLG 546 (554)
Q Consensus 529 p~~~~~~~~~g~~~~~~~ 546 (554)
|++ +...+..+...+
T Consensus 151 p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 151 PNN---YIEAQNWLKTTG 165 (172)
T ss_pred chh---HHHHHHHHHhcC
Confidence 987 334444444333
No 127
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.28 E-value=1.7e-06 Score=63.90 Aligned_cols=52 Identities=27% Similarity=0.311 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 502 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+.+|..+++.|+|++|+..|+++++.+|++..+++.+|.++..+|++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4689999999999999999999999999999999999999999999999974
No 128
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.26 E-value=2.1e-06 Score=67.11 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
+...++.+|.++++.|+|++|+..+++ ++.++.+...++.+|.|++++|+|++|+..++++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 667888899999999999999999999 8899999899999999999999999999999875
No 129
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.9e-06 Score=86.82 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=74.5
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
..|.++-.+.++|.++++.+.|.+|+.+|+++++.-+ .....++|+|.+|.++++|++|+..++++|.+.|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 3567788888888888888888888888888874321 134457888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+..|-..|.+|..+|+++.|++
T Consensus 489 ~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHH
Confidence 8888888888888888888764
No 130
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.25 E-value=2.1e-07 Score=88.25 Aligned_cols=87 Identities=33% Similarity=0.489 Sum_probs=79.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (554)
Q Consensus 468 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~ 547 (554)
.-.+..++..|++++|+++|..+|+++|.....|..++.+++++++...|+.+|..+++++|+..+.|-.+|.+...+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 33456677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 008755 548 YKEAIEG 554 (554)
Q Consensus 548 ~~~A~~~ 554 (554)
|++|..|
T Consensus 198 ~e~aa~d 204 (377)
T KOG1308|consen 198 WEEAAHD 204 (377)
T ss_pred hHHHHHH
Confidence 9988653
No 131
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.24 E-value=1.8e-05 Score=70.88 Aligned_cols=71 Identities=24% Similarity=0.186 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHc
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-------ESGSFL-------QAEADCTKAINL 527 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-------~~~~~~-------~A~~~~~~al~l 527 (554)
..+..++++|.++...|++++|+..|+++++++|.+...+.++|.++. .+|+++ +|+..+++++.+
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 356689999999999999999999999999999999999999999999 777876 556666667777
Q ss_pred CCCCH
Q 008755 528 DKKNV 532 (554)
Q Consensus 528 ~p~~~ 532 (554)
+|++.
T Consensus 150 ~p~~~ 154 (168)
T CHL00033 150 APGNY 154 (168)
T ss_pred CcccH
Confidence 88654
No 132
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=5.8e-06 Score=83.80 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=82.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~ 546 (554)
-+..|..++++|+..+|+-+|+.|+..||.+.++|..+|.++.+.++-..|+..++++++++|+|-+++..||+.|...+
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHhc
Q 008755 547 YYKEAIE 553 (554)
Q Consensus 547 ~~~~A~~ 553 (554)
.-.+|+.
T Consensus 368 ~q~~Al~ 374 (579)
T KOG1125|consen 368 LQNQALK 374 (579)
T ss_pred hHHHHHH
Confidence 8777754
No 133
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.20 E-value=8.1e-06 Score=64.26 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=65.9
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
.+.+...+..+|..+...+++++|+..|+++++..|.+...+..++.++...+++++|...++++++++|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 30 DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 34556889999999999999999999999999999999999999999999999999999999999998874
No 134
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.3e-06 Score=84.70 Aligned_cols=94 Identities=39% Similarity=0.486 Sum_probs=87.6
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
+....+...+.+|+.++++.+|.+|+..|+.||++.|+++..|.+++.+++..++|++|+.++++.++++|.+.+++.+.
T Consensus 44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~ 123 (486)
T KOG0550|consen 44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE 123 (486)
T ss_pred hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccch
Confidence 33466788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHh
Q 008755 539 GTAREMLGYYKEAI 552 (554)
Q Consensus 539 g~~~~~~~~~~~A~ 552 (554)
+.++..+++..+|.
T Consensus 124 ~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 124 GQCHLALSDLIEAE 137 (486)
T ss_pred hhhhhhhHHHHHHH
Confidence 99999988877764
No 135
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.20 E-value=1.5e-06 Score=54.49 Aligned_cols=31 Identities=48% Similarity=0.733 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 008755 487 YTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517 (554)
Q Consensus 487 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A 517 (554)
|+|||+++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 4444445555555555555554444444444
No 136
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.19 E-value=2.1e-06 Score=53.90 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 520 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999975
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=1.5e-05 Score=79.44 Aligned_cols=93 Identities=22% Similarity=0.171 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
+.....+|-.+..++..|++++|+..++..+...|+|+..+...+.++++.++.++|++.+++++.++|+.....+++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
+|.+.|++.+|+.
T Consensus 383 all~~g~~~eai~ 395 (484)
T COG4783 383 ALLKGGKPQEAIR 395 (484)
T ss_pred HHHhcCChHHHHH
Confidence 9999999999874
No 138
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=3.7e-05 Score=72.71 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=86.1
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLR 537 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~ 537 (554)
.+-+.+..+.+++..+....+.++|+..+.||++.||+...+-..+|.+++..|+|++|++.++.+++.||++ +++.-.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999987 456777
Q ss_pred HHHHHHHcCCHHHHh
Q 008755 538 RGTAREMLGYYKEAI 552 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~ 552 (554)
+-.||.++|+.++.+
T Consensus 255 L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 255 LYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHhCCHHHHH
Confidence 899999999988764
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.17 E-value=1.8e-05 Score=75.11 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY 535 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~ 535 (554)
..++.++..|..+++.|+|++|+..|++.++..|....+ .+.+|.+|+++++|++|+..+++.++++|++ ..++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456778999999999999999999999999999987654 4899999999999999999999999999976 5578
Q ss_pred HHHHHHHHHcC
Q 008755 536 LRRGTAREMLG 546 (554)
Q Consensus 536 ~~~g~~~~~~~ 546 (554)
|.+|.++..++
T Consensus 110 Y~~g~~~~~~~ 120 (243)
T PRK10866 110 YMRGLTNMALD 120 (243)
T ss_pred HHHHHhhhhcc
Confidence 99998865554
No 140
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.13 E-value=4.2e-05 Score=66.76 Aligned_cols=80 Identities=24% Similarity=0.139 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKD----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------FLQAE 518 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~ 518 (554)
+|.+++.+++.|.+++.. ..+++|+..|++||.++|+.-++++++|.+|..++. |++|.
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 568899999999887664 346778999999999999999999999999985543 89999
Q ss_pred HHHHHHHHcCCCCHHHHHHHH
Q 008755 519 ADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 519 ~~~~~al~l~p~~~~~~~~~g 539 (554)
.+|++|..++|+|.....-+-
T Consensus 101 ~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 101 EYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHH
Confidence 999999999998765544433
No 141
>PRK11906 transcriptional regulator; Provisional
Probab=98.12 E-value=3e-05 Score=77.80 Aligned_cols=93 Identities=12% Similarity=-0.095 Sum_probs=55.1
Q ss_pred ChhhHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 460 QKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
+|..+.++..++.+++.. .+-.+|.++.++|+++||+++.++..+|.++...++++.|+..+++|+.++|+
T Consensus 291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn 370 (458)
T PRK11906 291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD 370 (458)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence 344455555555444332 23445556666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHh
Q 008755 531 NVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
++.++|..|..+...|+.++|+
T Consensus 371 ~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 371 IASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred cHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666666666654
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.12 E-value=1.6e-05 Score=76.14 Aligned_cols=90 Identities=12% Similarity=-0.003 Sum_probs=80.5
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHH
Q 008755 464 AEIAKEKGNQA-YKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYL 536 (554)
Q Consensus 464 ~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~ 536 (554)
...+++.+..+ ++.|+|++|+..|++.++..|+. +.+++.+|.+|+..|+|++|+..|+++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34567777765 66799999999999999999997 579999999999999999999999999999887 477899
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
.+|.++..+|++++|++
T Consensus 222 klg~~~~~~g~~~~A~~ 238 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKA 238 (263)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 99999999999999975
No 143
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=3.5e-05 Score=72.00 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=67.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHH
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGT 540 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g~ 540 (554)
.|+.+..+++.|+|.+|...|.+-|+.-|+. +.++|=+|.+++.+|+|++|...|..+++-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777778888888888888888888887764 5677888888888888888888888888877654 556888888
Q ss_pred HHHHcCCHHHHh
Q 008755 541 AREMLGYYKEAI 552 (554)
Q Consensus 541 ~~~~~~~~~~A~ 552 (554)
++..+|+.++|.
T Consensus 224 ~~~~l~~~d~A~ 235 (262)
T COG1729 224 SLGRLGNTDEAC 235 (262)
T ss_pred HHHHhcCHHHHH
Confidence 888888888775
No 144
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.10 E-value=4.1e-05 Score=77.68 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-------------------------------------HHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------------------------TYYSNRAA 506 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------------~~~~~~a~ 506 (554)
.+....++..++..|++++|+..++++++.+|++. .++..+|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 34455556666666666666666666666655543 34456777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 507 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++..+|++++|+..++++++++|++..++..+|.+++.+|++++|++
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999999999999999999999999999999999999999974
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=98.09 E-value=1.7e-05 Score=79.58 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=81.1
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
-.+.|+.++..+|......++++.|+..|++|+.++|+.+.+|+.+|.+....|+.++|.+.++++++++|....+-..+
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999887765555
Q ss_pred HHH-HHHcCCHHHHh
Q 008755 539 GTA-REMLGYYKEAI 552 (554)
Q Consensus 539 g~~-~~~~~~~~~A~ 552 (554)
-++ .+.....++|+
T Consensus 413 ~~~~~~~~~~~~~~~ 427 (458)
T PRK11906 413 ECVDMYVPNPLKNNI 427 (458)
T ss_pred HHHHHHcCCchhhhH
Confidence 444 44444445444
No 146
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.09 E-value=1.1e-05 Score=78.85 Aligned_cols=91 Identities=20% Similarity=0.141 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.++..+......+...++++++...++++.+.. +.++..|..+|.++.+.|++++|+.+|+++++++|++..+...++
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566677778899999999999999988765 678899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHh
Q 008755 540 TAREMLGYYKEAI 552 (554)
Q Consensus 540 ~~~~~~~~~~~A~ 552 (554)
.++...|+++++.
T Consensus 188 ~~li~~~~~~~~~ 200 (280)
T PF13429_consen 188 WLLIDMGDYDEAR 200 (280)
T ss_dssp HHHCTTCHHHHHH
T ss_pred HHHHHCCChHHHH
Confidence 9999999988754
No 147
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.08 E-value=4.2e-05 Score=70.75 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAY 535 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~ 535 (554)
.++..++..|..+++.|+|.+|+..|++.+...|.. ..+.+.+|.++++.++|++|+..+++-++..|++. .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 456789999999999999999999999999998864 57899999999999999999999999999999864 589
Q ss_pred HHHHHHHHHc
Q 008755 536 LRRGTAREML 545 (554)
Q Consensus 536 ~~~g~~~~~~ 545 (554)
|.+|.+++.+
T Consensus 83 Y~~g~~~~~~ 92 (203)
T PF13525_consen 83 YMLGLSYYKQ 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 148
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.05 E-value=9.4e-06 Score=84.33 Aligned_cols=87 Identities=16% Similarity=0.107 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
.+.+.+|...+.+++|+++.++++.+++++|-....|+.+|.|+.++++++.|..+|..++.++|++.++|.|++.+|..
T Consensus 486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 34444555555567777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHH
Q 008755 545 LGYYKEA 551 (554)
Q Consensus 545 ~~~~~~A 551 (554)
.++..+|
T Consensus 566 ~~~k~ra 572 (777)
T KOG1128|consen 566 LKKKKRA 572 (777)
T ss_pred HhhhHHH
Confidence 6665554
No 149
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.05 E-value=6.4e-05 Score=77.88 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=82.4
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD- 528 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~- 528 (554)
+.++.-+..+.++|..|++.|+|++|.+.|++||++. +.....++++|..|.+++++.+|.+.|.+++.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 3455778899999999999999999999999999874 2335678999999999999999999999988773
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 529 ------KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 529 ------p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|+--..|.+++.+|..+|++++|++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 3445678999999999999999975
No 150
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=5e-05 Score=76.91 Aligned_cols=82 Identities=21% Similarity=0.166 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
.....+.++|-.+.+.++|++|+..|+++|.+.|.++..|..+|.+|..+|+++.|++.|.|+|-++|++.-+--.++.+
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999999999999999999996665555555
Q ss_pred HH
Q 008755 542 RE 543 (554)
Q Consensus 542 ~~ 543 (554)
..
T Consensus 533 ie 534 (611)
T KOG1173|consen 533 IE 534 (611)
T ss_pred HH
Confidence 43
No 151
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.03 E-value=1.1e-05 Score=54.08 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
++..+|.+|..+|++++|++.|+++++++|+++.+++.+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444555555555555555555555555555555554444
No 152
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.03 E-value=2.7e-05 Score=86.16 Aligned_cols=84 Identities=14% Similarity=-0.039 Sum_probs=46.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008755 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 548 (554)
Q Consensus 469 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~ 548 (554)
.+...+...|++++|+.++++++..+|.....+..+|.+|..+|+|++|++.|+++++++|+++.+++.++.++...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 55555555566666666666665222222333333355666666666666666666666666666666555666666666
Q ss_pred HHHh
Q 008755 549 KEAI 552 (554)
Q Consensus 549 ~~A~ 552 (554)
++|+
T Consensus 153 ~eAl 156 (822)
T PRK14574 153 GVVL 156 (822)
T ss_pred HHHH
Confidence 6554
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.02 E-value=4.4e-05 Score=80.37 Aligned_cols=76 Identities=20% Similarity=0.070 Sum_probs=60.3
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
.+.++..+..+|..+...|++++|...|++|++++| +..+|..+|.++...|++++|++.|++|+.++|.++..|.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 344456777778888888888888888888888888 4678888888888888888888888888888887776443
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=7.2e-05 Score=68.50 Aligned_cols=91 Identities=19% Similarity=0.093 Sum_probs=63.9
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
..+|.+.-.+...--....+|+.-+|++.+.+-++.-+++.++|..++..|+..++|++|.=+|++.+-++|.++-.+-+
T Consensus 114 ~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r 193 (289)
T KOG3060|consen 114 EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR 193 (289)
T ss_pred ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 34445544555444444555666666666666666666677788888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCH
Q 008755 538 RGTAREMLGYY 548 (554)
Q Consensus 538 ~g~~~~~~~~~ 548 (554)
+|.+++-+|-.
T Consensus 194 lae~~Yt~gg~ 204 (289)
T KOG3060|consen 194 LAEVLYTQGGA 204 (289)
T ss_pred HHHHHHHHhhH
Confidence 88887776653
No 155
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.01 E-value=1.4e-05 Score=53.72 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA 506 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 506 (554)
..++.+|..+...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999998875
No 156
>PRK15331 chaperone protein SicA; Provisional
Probab=98.01 E-value=3.8e-05 Score=66.44 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=70.7
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
.++.+.+.|+.+|-++...++|++|+..|..+..++++++...+..|.||+.+++.++|..+++.+++ .|.+.. +..+
T Consensus 66 ~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~-l~~~ 143 (165)
T PRK15331 66 YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES-LRAK 143 (165)
T ss_pred hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH-HHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999 465433 3344
Q ss_pred HHHH
Q 008755 539 GTAR 542 (554)
Q Consensus 539 g~~~ 542 (554)
+.++
T Consensus 144 A~~~ 147 (165)
T PRK15331 144 ALVY 147 (165)
T ss_pred HHHH
Confidence 4443
No 157
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.99 E-value=1.2e-05 Score=50.63 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
.+|+++|.+|+.+++|++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 158
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.98 E-value=5.9e-05 Score=71.79 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~ 545 (554)
.+......++..|++..|++..++.|++.|.+...|..++.||...++...||.+++++-+|..++.+.+|.++..++..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 34455566788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhc
Q 008755 546 GYYKEAIE 553 (554)
Q Consensus 546 ~~~~~A~~ 553 (554)
|+.++++.
T Consensus 237 gd~~~sL~ 244 (504)
T KOG0624|consen 237 GDAENSLK 244 (504)
T ss_pred hhHHHHHH
Confidence 99888763
No 159
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.98 E-value=2.9e-05 Score=80.39 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=83.8
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--- 527 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--- 527 (554)
..|........++..|+.+|+|++|+..+++|++. .|.-......+|..|..+++|++|+..|++|+.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45677778888999999999999999999999998 5666677788999999999999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 528 -----DKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 -----~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|.-..++.+++.+|+.+|++++|..
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~ 304 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEE 304 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHH
Confidence 45556679999999999999999864
No 160
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=2.1e-05 Score=77.22 Aligned_cols=90 Identities=22% Similarity=0.189 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
++.++.+.|+..|.+|++++|.+.|++||.-|..-.++++|+|..+..+|++++|+.++-+.-.+--++.++++.++.+|
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45566666777777777777777777776655555555566666666666666666555443333334555555555555
Q ss_pred HHcCCHHHHh
Q 008755 543 EMLGYYKEAI 552 (554)
Q Consensus 543 ~~~~~~~~A~ 552 (554)
..+.+..+|+
T Consensus 569 e~led~aqai 578 (840)
T KOG2003|consen 569 ELLEDPAQAI 578 (840)
T ss_pred HHhhCHHHHH
Confidence 5555555554
No 161
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.91 E-value=0.00012 Score=61.96 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCC---------------HHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS---------------FLQAEADCT 522 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~---------------~~~A~~~~~ 522 (554)
+-..++...++-.++++++|++|+..|++-|+++|.++ -+++.+|.+++.+.+ ..+|...++
T Consensus 44 ~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~ 123 (142)
T PF13512_consen 44 EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFE 123 (142)
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHH
Confidence 34567889999999999999999999999999999875 479999999999887 999999999
Q ss_pred HHHHcCCCCHHH
Q 008755 523 KAINLDKKNVKA 534 (554)
Q Consensus 523 ~al~l~p~~~~~ 534 (554)
+.++..|++..+
T Consensus 124 ~lv~~yP~S~ya 135 (142)
T PF13512_consen 124 QLVRRYPNSEYA 135 (142)
T ss_pred HHHHHCcCChhH
Confidence 999999998765
No 162
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.00023 Score=62.03 Aligned_cols=92 Identities=25% Similarity=0.125 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY 535 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~ 535 (554)
..+...+......+..+++.++...+++.++..|+. ..+...+|.+++..|+|++|+..|++++...|+. ..+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345566677777778999999999999999999998 5678889999999999999999999999988665 4578
Q ss_pred HHHHHHHHHcCCHHHHhc
Q 008755 536 LRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 536 ~~~g~~~~~~~~~~~A~~ 553 (554)
++++.++..+|++++|+.
T Consensus 89 l~LA~~~~~~~~~d~Al~ 106 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALA 106 (145)
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 899999999999999975
No 163
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.89 E-value=2.3e-05 Score=81.58 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=91.8
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
...+|-....|+.+|.++.+.++++.|..+|...+.++|++.++|+|++.+|..+++-.+|...+.+|++-+-++++.+-
T Consensus 512 l~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 512 LEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred hhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
|.-.+....|.+++|++
T Consensus 592 Nymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIK 608 (777)
T ss_pred chhhhhhhcccHHHHHH
Confidence 99999999999999974
No 164
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.88 E-value=8e-05 Score=77.05 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
|+....+...+..+.++|++++|..+|+++.+..|++. .+....+..+++.+++++|.+.+++.++.+|+++.++..++
T Consensus 115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~ 194 (409)
T TIGR00540 115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE 194 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44556677789999999999999999999999998875 46666799999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++..+|++++|++
T Consensus 195 ~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 195 EAYIRSGAWQALDD 208 (409)
T ss_pred HHHHHHhhHHHHHH
Confidence 99999999998864
No 165
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.88 E-value=2.5e-05 Score=49.11 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 497 (554)
+..|+.+|..++..|++++|+.+|+++|+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 166
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.87 E-value=2.3e-05 Score=59.23 Aligned_cols=50 Identities=28% Similarity=0.449 Sum_probs=47.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755 505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 505 a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~ 554 (554)
..+|++.++|++|++.++++++++|+++..++.+|.++..+|++++|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 51 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALED 51 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHH
Confidence 46789999999999999999999999999999999999999999999763
No 167
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.86 E-value=1.1e-05 Score=62.06 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C-C---CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLD---K-K---NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 496 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p-~---~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+...+++++|.+|..+|+|++|+.+|++++++. + + -..+++++|.++..+|++++|++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 446789999999999999999999999999772 1 2 25578999999999999999975
No 168
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.86 E-value=7.7e-05 Score=80.04 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
+-.++.+|.+|..+..+|+|++|..+|.+++..++++ .-.++.+|+.|...|+++.++.++++.++.+|++.+....+|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4456668888888888888888888888888888877 556777888888888888888888888888888888888888
Q ss_pred HHHHHcC
Q 008755 540 TAREMLG 546 (554)
Q Consensus 540 ~~~~~~~ 546 (554)
..|...+
T Consensus 384 ~Lya~~~ 390 (1018)
T KOG2002|consen 384 CLYAHSA 390 (1018)
T ss_pred hHHHhhh
Confidence 8777664
No 169
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.85 E-value=3.9e-05 Score=48.16 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
+|+.+|.+|+++|+|++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=7e-05 Score=78.87 Aligned_cols=75 Identities=23% Similarity=0.166 Sum_probs=66.1
Q ss_pred cCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 478 KQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 478 g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+.+++....++++.+ +|.++.+|.-+|..+...|++++|...+++|++++| +..+|..+|.++...|++++|++
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566777888887774 778888999999999999999999999999999999 58899999999999999999875
No 171
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=7.3e-05 Score=70.73 Aligned_cols=91 Identities=18% Similarity=0.069 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
.+++.+.++|.+-+..++++-++..|++|+.... .-+++|+|+|.+....||+..|..+++-+|.-|+++.+++.|+
T Consensus 356 ~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 356 QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL 435 (478)
T ss_pred CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence 4567788888888888888888888888887633 2467888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHh
Q 008755 539 GTAREMLGYYKEAI 552 (554)
Q Consensus 539 g~~~~~~~~~~~A~ 552 (554)
|..-.+.|+.++|.
T Consensus 436 avL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 436 AVLAARSGDILGAR 449 (478)
T ss_pred HHHHhhcCchHHHH
Confidence 88888888888875
No 172
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=4.6e-05 Score=47.79 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 497 (554)
++.|+.+|..+++.|+|++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=4.1e-05 Score=56.91 Aligned_cols=46 Identities=28% Similarity=0.257 Sum_probs=42.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++.|+|++|+..|+++++.+|++.++++.++.+|..+|++++|.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 46 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEE 46 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3678999999999999999999999999999999999999999974
No 174
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.83 E-value=0.00013 Score=78.46 Aligned_cols=101 Identities=19% Similarity=0.189 Sum_probs=88.9
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
++..-..++.++.++..+++-+|..|+|+.+...+..++...-+ -+..+|++|.+|..+|+|++|..+|.++++-++
T Consensus 259 l~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 259 LQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 33334456789999999999999999999999999999987644 355699999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHhc
Q 008755 530 KN-VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 530 ~~-~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++ .-.++.+|..|...|+++.|+.
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHH
Confidence 98 8889999999999999998863
No 175
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.82 E-value=7e-05 Score=82.25 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=81.8
Q ss_pred ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-------------------HHHHHHHHHHHHcCCHHH
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------TYYSNRAAAYLESGSFLQ 516 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------~~~~~~a~~~~~~~~~~~ 516 (554)
....+|+....++..|..+++.+++.++... +++..-+.+. .+++.+|.||-++|++++
T Consensus 57 ~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 57 HLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence 3455778888999999988888888777666 6665555544 899999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 517 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|.+.|+++++++|+|+.++.++|..|... +.++|++
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 99999999999999999999999999999 9998875
No 176
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=7.3e-05 Score=69.85 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--hcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008755 428 RFLLDTVQNMYASLQEQADIAT--KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA 505 (554)
Q Consensus 428 ~~ll~~a~~le~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 505 (554)
..+..-.-+++.++...+.... ++.+.+.. ..++++...+.|...++.|+|++|+..|+.|++....++-.-++++
T Consensus 108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA 185 (459)
T KOG4340|consen 108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA 185 (459)
T ss_pred HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence 5566666666666655443222 22222222 2356788999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCC-------------------------HHHHHHHHHHHHHcCCHHHHhc
Q 008755 506 AAYLESGSFLQAEADCTKAINL----DKKN-------------------------VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 506 ~~~~~~~~~~~A~~~~~~al~l----~p~~-------------------------~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.|+++.++|+.|++...+.++. .|.. .++++.++-++++.++++.|.+
T Consensus 186 LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 186 LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 9999999999999998887754 3421 4466677888999999988754
No 177
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.80 E-value=0.00014 Score=74.99 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=77.7
Q ss_pred HHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 465 EIAKEK-GNQAYKDKQWLKAISFYTEAIKLNGNNATYY-SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 465 ~~~~~~-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
..++.. +....+.|++++|..+|+++.+.+|++..+. ...+..+...|++++|++.+++.++.+|+++.++..++.+|
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~ 197 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344444 5566999999999999999999999985443 34589999999999999999999999999999999999999
Q ss_pred HHcCCHHHHhc
Q 008755 543 EMLGYYKEAIE 553 (554)
Q Consensus 543 ~~~~~~~~A~~ 553 (554)
.+.|++++|++
T Consensus 198 ~~~gdw~~a~~ 208 (398)
T PRK10747 198 IRTGAWSSLLD 208 (398)
T ss_pred HHHHhHHHHHH
Confidence 99999999873
No 178
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.78 E-value=0.00021 Score=73.89 Aligned_cols=91 Identities=11% Similarity=-0.026 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY--SNRAAAYLESGSFLQAEADCTKAINLDKKNV--KAYLR 537 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~--~~~~~ 537 (554)
+++..+...+..+...|++++|+..++++++..|++.... ..+...++..++.+++++.++++++.+|+++ ..+..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4556666666666666666666666666666555544311 1111122223444555555555555555555 44445
Q ss_pred HHHHHHHcCCHHHHh
Q 008755 538 RGTAREMLGYYKEAI 552 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~ 552 (554)
+|.++.++|+|++|.
T Consensus 341 Lg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 341 LGQLLMKHGEFIEAA 355 (409)
T ss_pred HHHHHHHcccHHHHH
Confidence 555555555555553
No 179
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.76 E-value=0.00032 Score=72.26 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=62.4
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 477 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++++++..+++.++.+|+++..+..+|.+++..++|++|.+.++++++++|++ ..+..++.++..+|+.++|.+
T Consensus 307 ~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 307 TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Confidence 3666666666666667788888889999999999999999999999999999875 446688999999999888864
No 180
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00081 Score=61.82 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=80.0
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~ 531 (554)
.-...-+.|.++|.+++..|+..|+|++|.-||++.+-++|.++-++..+|.+++.+| ++..|..+|.++++++|.+
T Consensus 145 ~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 145 EYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 3344567899999999999999999999999999999999999999999999999777 6999999999999999988
Q ss_pred HHHHHHHHHHHHHc
Q 008755 532 VKAYLRRGTAREML 545 (554)
Q Consensus 532 ~~~~~~~g~~~~~~ 545 (554)
..++|.+-.+-..+
T Consensus 225 ~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 225 LRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888765554443
No 181
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00031 Score=69.15 Aligned_cols=93 Identities=16% Similarity=-0.006 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
..-.+++++.|..+-..|+.++|+++|-|.-.+--++.+++++++.+|..+.+-.+|+++|.++..+-|+++..+..+|.
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d 600 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD 600 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 35678899999999999999999999998777777899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
.|-+.|+..+|.+
T Consensus 601 lydqegdksqafq 613 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQ 613 (840)
T ss_pred Hhhcccchhhhhh
Confidence 9999999888764
No 182
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00018 Score=70.31 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=80.2
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH----------------------------------HHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----------------------------------YSN 503 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~ 503 (554)
..-+++...+..+|.+++..|++++|+..|+++.-+||.+... |+-
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 3456888889999999999999999999999999888875422 444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 504 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
-+..++..++|..|+.+-+|+|+.+|++.+++..+|.++..+++.++|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHH
Confidence 4555667888999999999999999999999999999999999998885
No 183
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.72 E-value=0.00011 Score=64.31 Aligned_cols=68 Identities=21% Similarity=0.166 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG----------SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (554)
Q Consensus 480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~ 547 (554)
|+.|.+.++.....||.+.+.+++=|.+++++- -+++|+.=|++||.++|+...+++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999888663 37888999999999999999999999999988765
No 184
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.70 E-value=5.1e-05 Score=81.36 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
...|..+|..+.+.+++.+|+..|+.+++.+|++...|..+|.+|...|+|..|++.+.+|..++|.+..+.|..+...+
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 45577799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHhc
Q 008755 544 MLGYYKEAIE 553 (554)
Q Consensus 544 ~~~~~~~A~~ 553 (554)
.+|+|++|+.
T Consensus 642 d~GkYkeald 651 (1238)
T KOG1127|consen 642 DNGKYKEALD 651 (1238)
T ss_pred HhhhHHHHHH
Confidence 9999999864
No 185
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.70 E-value=0.00087 Score=70.33 Aligned_cols=90 Identities=16% Similarity=0.062 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
.-.++.+++.+-..|++++|+.++++||+..|..++.|...|.+|-..|++++|...+++|-++|..+...-..-+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 45668889999999999999999999999999999999999999999999999999999999999988887777788889
Q ss_pred HcCCHHHHhc
Q 008755 544 MLGYYKEAIE 553 (554)
Q Consensus 544 ~~~~~~~A~~ 553 (554)
+.|+.++|.+
T Consensus 274 Ra~~~e~A~~ 283 (517)
T PF12569_consen 274 RAGRIEEAEK 283 (517)
T ss_pred HCCCHHHHHH
Confidence 9999999974
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.67 E-value=0.00095 Score=55.48 Aligned_cols=80 Identities=15% Similarity=0.011 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
+.....+..+|..+...|++++|+..++++++..|+ +..+...++.+++.+|++++|++.+-.++.-.. ..|.
T Consensus 35 ~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~----~~y~ 110 (120)
T PF12688_consen 35 ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAETL----PRYR 110 (120)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HHHH
Confidence 455678999999999999999999999999999888 788888899999999999999999988876322 1666
Q ss_pred HHHHHHH
Q 008755 538 RGTAREM 544 (554)
Q Consensus 538 ~g~~~~~ 544 (554)
+++.++.
T Consensus 111 ra~~~ya 117 (120)
T PF12688_consen 111 RAIRFYA 117 (120)
T ss_pred HHHHHHH
Confidence 6666553
No 187
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.00013 Score=73.10 Aligned_cols=96 Identities=29% Similarity=0.301 Sum_probs=85.7
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~~~ 535 (554)
+-+++.+.++..|+..+..+....|+.+|.++++..|.....|.+++.++++.+ +.-.|+.++-.|++++|...+++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 346778888899999999999999999999999999999999999999988764 67789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHhcC
Q 008755 536 LRRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 536 ~~~g~~~~~~~~~~~A~~~ 554 (554)
|+++.++..++++.+|+.+
T Consensus 449 ~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHhhHHHhhhh
Confidence 9999999999999999763
No 188
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.62 E-value=0.00048 Score=76.43 Aligned_cols=95 Identities=11% Similarity=-0.055 Sum_probs=90.5
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
..+|+-.+....+++.+...|++.+|++.+++.+...|.|..++..+|.++...|.+.+|++.++++..++|++..+.+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHh
Q 008755 538 RGTAREMLGYYKEAI 552 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~ 552 (554)
++.++..++++++|.
T Consensus 490 ~~~~al~l~e~~~A~ 504 (822)
T PRK14574 490 QAETAMALQEWHQME 504 (822)
T ss_pred HHHHHHhhhhHHHHH
Confidence 999999999999984
No 189
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.59 E-value=0.00013 Score=69.50 Aligned_cols=88 Identities=22% Similarity=0.198 Sum_probs=77.7
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
.-+...+...|.++-.+.+++.+|++.++|..|...++.|+.+|..+..+|..++.+...+|+..+|..+|+.+|+|.|+
T Consensus 118 DCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 118 DCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 33444555667888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHH
Q 008755 531 NVKAYLRR 538 (554)
Q Consensus 531 ~~~~~~~~ 538 (554)
+.+..-.+
T Consensus 198 ~~ELkK~~ 205 (536)
T KOG4648|consen 198 NIELKKSL 205 (536)
T ss_pred cHHHHHHH
Confidence 77654433
No 190
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.59 E-value=0.00024 Score=73.27 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
...-.|.-+|..+...++|++|+.+|+.|+.++|+|.++|..++....++++|+.....-.+.+++.|.+...|+..+.+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45567888899999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHcCCHHHHhc
Q 008755 542 REMLGYYKEAIE 553 (554)
Q Consensus 542 ~~~~~~~~~A~~ 553 (554)
+...|++..|..
T Consensus 153 ~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 153 QHLLGEYKMALE 164 (700)
T ss_pred HHHHHHHHHHHH
Confidence 998888888753
No 191
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.58 E-value=4.1e-05 Score=76.49 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 008755 437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516 (554)
Q Consensus 437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~ 516 (554)
+...+.......+...+..++..+|+.+..+-+++.++++.++|..|+..+.+||+++|....+|+.+|.+.+.+++|.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 33344444444555566677778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HcCCHHHHh
Q 008755 517 AEADCTKAINLDKKNVKAYLRRGTARE--MLGYYKEAI 552 (554)
Q Consensus 517 A~~~~~~al~l~p~~~~~~~~~g~~~~--~~~~~~~A~ 552 (554)
|+.++++...+.|+++++.-.+-.|-. ...+++.|+
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999998776666533 333455543
No 192
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.57 E-value=0.00023 Score=69.37 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
+..-.....+.+.+..| ++++|...|+...+..+..+..++.++.|++++|+|++|...++++++.+|+++.++.|+.
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 44444444555555555 6999999999987777788899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHH
Q 008755 540 TAREMLGYYKE 550 (554)
Q Consensus 540 ~~~~~~~~~~~ 550 (554)
.+...+|+..+
T Consensus 243 v~~~~~gk~~~ 253 (290)
T PF04733_consen 243 VCSLHLGKPTE 253 (290)
T ss_dssp HHHHHTT-TCH
T ss_pred HHHHHhCCChh
Confidence 99999888733
No 193
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0011 Score=62.92 Aligned_cols=92 Identities=28% Similarity=0.342 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
-...++..+-++|.+..+|++|++.-++...+.+.. +..|-.+++.+....+.++|...+.+|++-+|+...+-.
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi 218 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI 218 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence 445678888999999999999999999999988764 446778899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
.+|.++...|+|+.|++
T Consensus 219 ~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 219 ILGRVELAKGDYQKAVE 235 (389)
T ss_pred hhhHHHHhccchHHHHH
Confidence 99999999999999975
No 194
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00022 Score=67.55 Aligned_cols=134 Identities=10% Similarity=0.076 Sum_probs=97.6
Q ss_pred eeEEEeccCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 008755 417 SVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN 496 (554)
Q Consensus 417 g~~~~~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 496 (554)
+-.+...+++-..++..++..|...+.+..... +....+..+.+.++.--.|.-||..++++-|+.+|++.|++.-.
T Consensus 280 ~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~l---Yk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 280 GEGLDSFPFDVTYLLGQARIHEAMEQQEDALQL---YKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred hhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHH---HHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 334444555556666666666555444333322 22234445666777777788888889999999999999999888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 497 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++.|.|+|.|-+.-++|+-++..+++|+..-- .-...|||+|.+....|++.-|.+
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence 899999999999999999999999999988743 235679999998888888877654
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.0014 Score=57.37 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRG 539 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~g 539 (554)
..+..+.+++.+...|++.||..+|++++. +--+++..+..++++.+..+++.+|...+++..+.+|. .+..+..+|
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 345677788899999999999999998885 34456777788888888888888888888888888875 455677777
Q ss_pred HHHHHcCCHHHHh
Q 008755 540 TAREMLGYYKEAI 552 (554)
Q Consensus 540 ~~~~~~~~~~~A~ 552 (554)
.+|..+|++++|.
T Consensus 168 R~laa~g~~a~Ae 180 (251)
T COG4700 168 RTLAAQGKYADAE 180 (251)
T ss_pred HHHHhcCCchhHH
Confidence 7788888877664
No 196
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.51 E-value=0.00014 Score=64.99 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=79.4
Q ss_pred HhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
..++..+.+....+|+.++.++.+|.-+...|+|+.|.+.|+..+++||.+--++.|+|..++--|+|+-|.+++.+-.+
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 34556667777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHH
Q 008755 527 LDKKNVK 533 (554)
Q Consensus 527 l~p~~~~ 533 (554)
-||+++-
T Consensus 162 ~D~~DPf 168 (297)
T COG4785 162 DDPNDPF 168 (297)
T ss_pred cCCCChH
Confidence 9998754
No 197
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.50 E-value=0.00051 Score=70.91 Aligned_cols=96 Identities=9% Similarity=0.001 Sum_probs=89.9
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....|+..+.+-..|..+...|+-++|..+...+++.|+.....|--+|.++..-++|++|+.+|+.|+.++|+|-+.+.
T Consensus 34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHh
Q 008755 537 RRGTAREMLGYYKEAI 552 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~ 552 (554)
-++....++++++...
T Consensus 114 DlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYL 129 (700)
T ss_pred HHHHHHHHHHhhhhHH
Confidence 9999999999987643
No 198
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.46 E-value=0.0016 Score=53.47 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=70.7
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
+.+.+.+..-|+++.+|+++++.+.-+|+.++|++.+++|+++.-.. ..+|.++|.+|..+|+.+.|..+|+.+-+
T Consensus 64 E~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 64 ELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 34444455567899999999999999999999999999999996543 45799999999999999999999999998
Q ss_pred cCCCCHH
Q 008755 527 LDKKNVK 533 (554)
Q Consensus 527 l~p~~~~ 533 (554)
+...+..
T Consensus 144 LGS~FAr 150 (175)
T KOG4555|consen 144 LGSKFAR 150 (175)
T ss_pred hCCHHHH
Confidence 8776544
No 199
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00094 Score=65.40 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
..+.-|+--+...+..++|+.|+.+-+|+|+.+|++..+|...|.++..+++.++|+-.|+.|+.+.|..-+.|-.+-.+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34566888888888899999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHcCCHHHHh
Q 008755 542 REMLGYYKEAI 552 (554)
Q Consensus 542 ~~~~~~~~~A~ 552 (554)
|...|++.||.
T Consensus 378 YLA~~~~kEA~ 388 (564)
T KOG1174|consen 378 YLAQKRFKEAN 388 (564)
T ss_pred HHhhchHHHHH
Confidence 99999998885
No 200
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.42 E-value=0.00092 Score=69.05 Aligned_cols=103 Identities=16% Similarity=0.075 Sum_probs=84.4
Q ss_pred hcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
+..+.+..+.+|++-++|+..-...+.+.+++.|..+|.|+....|. ..+|+..+.....+++.++|+..++++|+..|
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 34444455566777778887777778888888888888888777664 47788888888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 530 KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 530 ~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++.+.|+.+|+++.++++.+.|.+
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00086 Score=63.62 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008755 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~ 546 (554)
+.++-+..++.-|+.||++.+-|..+|.+|+.++++..|...|.+|+++.|+|++.+..+|.+++.+.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 45566777888899999999999999999999999999999999999999999999999999987664
No 202
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.38 E-value=0.00055 Score=69.10 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=66.7
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 525 (554)
..+.+....+|.+...+...+..+++.++|+.|+...++++++.|++...|+.++.+|.++|+|++|+..+.-+-
T Consensus 221 ~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 221 RLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 344445566788899999999999999999999999999999999999999999999999999999998776443
No 203
>PRK10941 hypothetical protein; Provisional
Probab=97.38 E-value=0.0039 Score=59.66 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
...+.++-..+.+.++++.|+.+.+..+.++|+++.-+..+|.+|++++.+..|..+++.-++..|+.+.+..-+-.+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4456667778999999999999999999999999999999999999999999999999999999999998876665544
No 204
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.37 E-value=0.00092 Score=72.15 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=66.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~ 545 (554)
...-+.....+++|++|++..+|+++.||+|..++..+|.++..+++ .++|.+.|-.|.+++|++.-+|-.++..|...
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~ 84 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERY 84 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHcc
Confidence 34456677778889999999999999999988888889999988887 88999999999999999888888888887663
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.37 E-value=0.0028 Score=58.60 Aligned_cols=93 Identities=22% Similarity=0.119 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCTKAI 525 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~-----------~~~~A~~~~~~al 525 (554)
.+-..++++.+|..+++.|+|++|+..|++.++..|+++ .+++.+|.+++.+. ...+|+..++..+
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 445678899999999999999999999999999999864 58999999987653 2568999999999
Q ss_pred HcCCCCHHH-----------------HHHHHHHHHHcCCHHHHh
Q 008755 526 NLDKKNVKA-----------------YLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 526 ~l~p~~~~~-----------------~~~~g~~~~~~~~~~~A~ 552 (554)
+..|++..+ -+..|..|.+.|+|..|+
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 999987432 233566677777776664
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.0054 Score=58.28 Aligned_cols=92 Identities=15% Similarity=0.048 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCC------------------HHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGS------------------FLQAEA 519 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~------------------~~~A~~ 519 (554)
+-...+.+.+|..+++.++|++|+..|++.++.+|++ ..+++.+|.+++.+++ -.+|+.
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 4455667899999999999999999999999999886 4678999998765541 357889
Q ss_pred HHHHHHHcCCCCHHH---H--------------HHHHHHHHHcCCHHHHh
Q 008755 520 DCTKAINLDKKNVKA---Y--------------LRRGTAREMLGYYKEAI 552 (554)
Q Consensus 520 ~~~~al~l~p~~~~~---~--------------~~~g~~~~~~~~~~~A~ 552 (554)
.+++.++..|+...+ . +..|.-|.+.|+|..|+
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 999999999987432 1 23455566666666554
No 207
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.33 E-value=0.0004 Score=43.44 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 500 YYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
+|+.+|.+|.++|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
No 208
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.29 E-value=0.00084 Score=63.17 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
+.+....+.+....+.|+.++|...|+.|+.++|.+++++...|......++.-+|-++|-+||.++|.|.+++-++...
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34445556677788899999999999999999999999999999999999999999999999999999999999887654
No 209
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.28 E-value=0.0011 Score=72.99 Aligned_cols=93 Identities=11% Similarity=-0.056 Sum_probs=83.8
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV------ 532 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~------ 532 (554)
-.|.+..+|..+...+...+++++|+..++.+++.+|+....|+.+|.++++.+++.++... .++.+.+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 35788999999999999999999999999999999999999999999999999988887776 7777766665
Q ss_pred -------------HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 -------------KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 -------------~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++.+|.||.++|++++|.+
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~ 137 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKG 137 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHH
Confidence 899999999999999999864
No 210
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.27 E-value=0.0019 Score=68.11 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=75.2
Q ss_pred hhcccccccccChhhHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAIS--FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
+...+......+|+.......+|..+.+.|+..-|.. .+..++++||.+.++|+++|.++.++|+.++|..+|+.|++
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 3344455566678999999999999999999988888 99999999999999999999999999999999999999999
Q ss_pred cCCCCH
Q 008755 527 LDKKNV 532 (554)
Q Consensus 527 l~p~~~ 532 (554)
+++.++
T Consensus 783 Le~S~P 788 (799)
T KOG4162|consen 783 LEESNP 788 (799)
T ss_pred hccCCC
Confidence 987654
No 211
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.27 E-value=0.0036 Score=58.23 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AY 535 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~ 535 (554)
..+..|++.|...++.|+|++|+..|++.....|.. ..+...++.++++.++|++|+...++=+++.|.++. ++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 357789999999999999999999999999887764 578899999999999999999999999999997654 67
Q ss_pred HHHHHHHHH
Q 008755 536 LRRGTAREM 544 (554)
Q Consensus 536 ~~~g~~~~~ 544 (554)
|.+|.++..
T Consensus 112 YlkgLs~~~ 120 (254)
T COG4105 112 YLKGLSYFF 120 (254)
T ss_pred HHHHHHHhc
Confidence 778887643
No 212
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.23 E-value=0.0007 Score=42.30 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 497 (554)
++.|+.+|..+.+.|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3579999999999999999999999999999954
No 213
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.0015 Score=61.34 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=68.3
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 474 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+.+..+|++|++++.--.+.+|.+-..++.+|.||+...+|..|..+|++...+.|...+..+..+..+++.+.+.+|++
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46677888888888888888888888888899999999999999999999888888888888888888888888888763
No 214
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.12 E-value=0.0016 Score=63.60 Aligned_cols=113 Identities=10% Similarity=-0.014 Sum_probs=82.4
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHH-HHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 008755 423 RHGGDRFLLDTVQNMYASLQEQA-DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501 (554)
Q Consensus 423 ~~~~d~~ll~~a~~le~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 501 (554)
...+|..+..++..+-....... ...+...+.......+..+..+..++.++++.|+|++|...++++++.+|++++.+
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 44578899999888765543321 11122222222233356778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHH
Q 008755 502 SNRAAAYLESGSF-LQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 502 ~~~a~~~~~~~~~-~~A~~~~~~al~l~p~~~~~~ 535 (554)
.|+..+...+|+- +.+.+.+.+....+|+++..-
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 9999999999988 667778888888999877653
No 215
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.09 E-value=0.004 Score=65.46 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
..+.+..+..++...|++++|++++++.-..-.+...++..+|.+++++|++++|...|++.|+.||+|...|..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 34566777888899999999999999988888888889999999999999999999999999999999999998888887
Q ss_pred HHc
Q 008755 543 EML 545 (554)
Q Consensus 543 ~~~ 545 (554)
...
T Consensus 83 g~~ 85 (517)
T PF12569_consen 83 GLQ 85 (517)
T ss_pred hhh
Confidence 433
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.0064 Score=52.88 Aligned_cols=84 Identities=25% Similarity=0.211 Sum_probs=47.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 469 EKGNQAYKDKQWLKAISFYTEAIKLNGN----------------------NATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 469 ~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
..+......++.+.++..+++++.+-.. ...+...++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 3344455556666666666666644211 123445555566666677777777777777
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 527 LDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 527 l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
++|-+-.++..+-.+|..+|+..+|+
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~ 116 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEAL 116 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 77766666666677777777766665
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.0065 Score=57.05 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
-.+.++|=+|..++.+|+|++|...|..+++-.|+. +++++.+|.+...+++-++|...+++.++..|+...+....
T Consensus 176 ~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 176 YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 446677779999999999999999999999987764 78999999999999999999999999999999988775543
No 218
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.07 E-value=0.0017 Score=63.51 Aligned_cols=91 Identities=29% Similarity=0.330 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--CCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC--C-
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNN----ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKK--N- 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~--~- 531 (554)
..+..+.+.++.+.+ .++++|+.+|++|+++- -+. ..++.++|.+|... +++++|++.|++|+++... .
T Consensus 73 ~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 445566666666554 49999999999999872 122 45789999999988 9999999999999998431 1
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
...+...+.++..+++|++|++
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3456788999999999999975
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.07 E-value=0.00054 Score=66.95 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CC--
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD----KK-- 530 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p~-- 530 (554)
...++-++||.|+-.|+|++|+..-+.-|++...+ -.++.|+|.||..+|+++.|+++|.+++.+. -.
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 34556677777777777777777766666654332 2467777777777777777777777655442 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+.-|-+|.+|..+++++.|+.
T Consensus 274 EAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 23345666777777777666653
No 220
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00097 Score=60.67 Aligned_cols=75 Identities=17% Similarity=0.061 Sum_probs=69.0
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
+..++..+|..+..|.+++.++++..+++.......++++++|+...+++.+|.+.++...|.+|+..+++|..+
T Consensus 33 y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 33 YSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 344455677888999999999999999999999999999999999999999999999999999999999999776
No 221
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.04 E-value=0.0057 Score=59.95 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHH-------------------------------HhcCCCHHHHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI-------------------------------KLNGNNATYYSNRAAAYLE 510 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-------------------------------~~~p~~~~~~~~~a~~~~~ 510 (554)
.++......+..+.+.|++++|.+...+++ +..|+++..++.+|..+++
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 335555555666666677777766666555 4578889999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 511 SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 511 ~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+.|.+|...++.|+++.| +...+..+|.++.++|+.++|.+
T Consensus 341 ~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 341 NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999987 47788899999999999888753
No 222
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.03 E-value=0.0035 Score=43.48 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
+.++.+|..++++|+|++|..+++.+|+++|+|.++......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567788888888888888888888888888888876555444
No 223
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0055 Score=56.10 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
.....+.+..++++..++|-+++++....|+.+|.|..+|+.+|.++....+-++|..++.++|+++|.-..+..
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 445668889999999999999999999999999999999999999999999999999999999999997655543
No 224
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.00053 Score=65.69 Aligned_cols=85 Identities=21% Similarity=0.062 Sum_probs=78.4
Q ss_pred HHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755 446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (554)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 525 (554)
...++..+...+..+|..+..+..++.++++.+++.+|+..|..|++++|+...-|-.++.+...+++|++|..++..++
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 44456677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC
Q 008755 526 NLDKK 530 (554)
Q Consensus 526 ~l~p~ 530 (554)
+++-+
T Consensus 210 kld~d 214 (377)
T KOG1308|consen 210 KLDYD 214 (377)
T ss_pred hcccc
Confidence 99754
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.005 Score=58.84 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 535 (554)
.|.+.-++..--.++|.+|+...-...++|.+-. +++. +.+.-.++.++.+.|-|++|.+..++++++|+.+..+.
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~ 212 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWAS 212 (491)
T ss_pred CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHH
Confidence 4566667777777788888888888888888876 6665 45556677888888889999999999999999888888
Q ss_pred HHHHHHHHHcCCHHHHhc
Q 008755 536 LRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 536 ~~~g~~~~~~~~~~~A~~ 553 (554)
..++.++.+.+++.++++
T Consensus 213 Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 213 HAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred HHHHHHHHhcchhhhHHH
Confidence 888888888888888764
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.0037 Score=57.76 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
..+.....+.+..+..+++|.+|...|++.++.||.++.+.++.|.|++.+|+..+|++.+++++++.|..
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 45667788889999999999999999999999999999999999999999999999999999999999964
No 227
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.77 E-value=0.035 Score=44.98 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=66.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCC
Q 008755 470 KGNQAYKDKQWLKAISFYTEAIKLNGN------------NATYYSNRAAAYLESGSFLQAEADCTKAINL-------DKK 530 (554)
Q Consensus 470 ~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~ 530 (554)
.|...++.|-|++|...|++|.+..-. +.-++..++.++..+|+|++++...+++|.. +.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 456677889999999999999987432 2346778888999999999999999999965 333
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 ----NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ----~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+..+.++++.++..+|+.++|+.
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~ 121 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALK 121 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHH
Confidence 35577899999999999999974
No 228
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.75 E-value=0.0078 Score=58.79 Aligned_cols=91 Identities=21% Similarity=0.220 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008755 462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNG--NN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 530 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---- 530 (554)
.-+..+.++|..+... +++++|+++|++|+++-. +. ...+.+.|.++.++++|++|++.|++.....-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4577899999999998 999999999999998732 21 457889999999999999999999999875322
Q ss_pred --CH-HHHHHHHHHHHHcCCHHHHh
Q 008755 531 --NV-KAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 531 --~~-~~~~~~g~~~~~~~~~~~A~ 552 (554)
+. ..++..+.++...|+...|.
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~ 216 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAAR 216 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHH
Confidence 12 24566788888888887764
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.019 Score=54.46 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=70.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK----------------------- 523 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~----------------------- 523 (554)
-+..+......+++.+|...|..+++.+|++..+...++.||...|+.++|...+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 445577778888888888888888888888888888888888888888766665543
Q ss_pred -----------HHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 524 -----------AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 524 -----------al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+.-+|++.++-+.++..|...|++++|.+
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale 257 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALE 257 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 222389999999999999999999999975
No 230
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0061 Score=58.31 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
-++-.|.+++-+.+..|+|..|+..+.+++.++|.+..+|+.-|.|+++++++++|..+|+..+.++-+
T Consensus 117 lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 117 LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 457789999999999999999999999999999999999999999999999999999999999887654
No 231
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.0055 Score=56.68 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH----Hhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI----KLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al----~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
++.++.....+|...++.||.+.|..+|++.= .++ .+.-.+..+.+.+|.-.++|.+|...+.+.++.||.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 35778888999999999999999999998433 222 234557788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
+.++++.|+..+|+..+|++
T Consensus 288 a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred hhchHHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 232
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.71 E-value=0.004 Score=61.04 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KNV 532 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------~~~ 532 (554)
.++.++||++.-.|+++.|+++|++.+.+ ... .+...|.+|..|.-+++|++||.+.++-|.+.. ...
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 56889999999999999999999997754 322 345568899999999999999999998776632 346
Q ss_pred HHHHHHHHHHHHcCCHHHHh
Q 008755 533 KAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 533 ~~~~~~g~~~~~~~~~~~A~ 552 (554)
.++|-+|.++..+|..++|+
T Consensus 316 RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 68999999999999999886
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.71 E-value=0.013 Score=51.00 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
...++..++..+...|++++|+..+++++..+|.+-.+|..+-.+|...|++.+|+..|++..+.
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34556677778889999999999999999999999999999999999999999999999887543
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.70 E-value=0.044 Score=48.29 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..++..+..+++..+..+++.+|...+++..+.+|. .++....+|.+|...|++++|...++.++...|+ +++...+
T Consensus 121 A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y 199 (251)
T COG4700 121 AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYY 199 (251)
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHH
Confidence 367788888999999999999999999999998886 4556677788888999999999999999998885 7777888
Q ss_pred HHHHHHcCCHHHHh
Q 008755 539 GTAREMLGYYKEAI 552 (554)
Q Consensus 539 g~~~~~~~~~~~A~ 552 (554)
+..+.++|+.++|.
T Consensus 200 ~e~La~qgr~~ea~ 213 (251)
T COG4700 200 AEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcchhHHH
Confidence 88888999877764
No 235
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.68 E-value=0.0033 Score=38.77 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
+++++|.++.++|++++|++.+++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666664
No 236
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.0059 Score=58.76 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
++.+.| +|-++|+.|+|++|+..|+-+.+.+.-+.+.+.+++.|++.+|.|.+|.+...++-+ .|-....+++++.-
T Consensus 57 ~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 345555 577899999999999999998887777788999999999999999999988877543 23223344555443
No 237
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.54 E-value=0.0048 Score=39.13 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755 501 YSNRAAAYLESGSFLQAEADCTKAI 525 (554)
Q Consensus 501 ~~~~a~~~~~~~~~~~A~~~~~~al 525 (554)
|.++|.+|.++|+|++|++.|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 238
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.014 Score=59.99 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=61.3
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
......|++..++...-.++.+.++|++|+...++-....-.+ ...+..+.|.|++++.++|+..++ -+++.....
T Consensus 37 Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~l 112 (652)
T KOG2376|consen 37 KILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKL 112 (652)
T ss_pred HHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccchHH
Confidence 3344446677777777777777788888774433322111111 222567778888888888888777 555666667
Q ss_pred HHHHHHHHHHcCCHHHHhc
Q 008755 535 YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~ 553 (554)
...++.+++++++|++|+.
T Consensus 113 l~L~AQvlYrl~~ydeald 131 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALD 131 (652)
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 7777888888888887753
No 239
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.43 E-value=0.0047 Score=37.21 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
.+|+++|.+++.++++++|+.+++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34566666666666666666666666666654
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.41 E-value=0.0068 Score=38.42 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
++.++|+.+.+.|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999996654
No 241
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.28 E-value=0.043 Score=57.26 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
....|+...+....+++.++|+.+++++|+..|++...|..+|+++.++++.+.|-..|...++.-|.....|..++..-
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 44567777777777777777777777777777777777777777777777777777777777777777776666666666
Q ss_pred HHcCCHHHH
Q 008755 543 EMLGYYKEA 551 (554)
Q Consensus 543 ~~~~~~~~A 551 (554)
...|..-.|
T Consensus 730 Ek~~~~~rA 738 (913)
T KOG0495|consen 730 EKDGQLVRA 738 (913)
T ss_pred HHhcchhhH
Confidence 655554443
No 242
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.12 Score=48.42 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 465 EIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 465 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
..+.++++.|.+ .+++.+|...|+..-+.-|-.+...+..+.|++.+++|++|...++.+|..++++++++-|+-.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 344444444433 3456677777777666555556667777777777777777777777777777777777777766
Q ss_pred HHHHcCCHHHH
Q 008755 541 AREMLGYYKEA 551 (554)
Q Consensus 541 ~~~~~~~~~~A 551 (554)
+-..+|.-.++
T Consensus 250 ~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 250 LALHLGKDAEV 260 (299)
T ss_pred HHHHhCCChHH
Confidence 66666665443
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.24 E-value=0.009 Score=36.72 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 497 (554)
++++.+|.++.+.|++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999999974
No 244
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.23 E-value=0.11 Score=45.05 Aligned_cols=83 Identities=11% Similarity=-0.200 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
..+.+......+.++.+++...+...--+.|+.+++-..-|..+...++|.+|+..++...+-.|.++.+--.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 33444444445555555555555554455555555555555555555555555555555555555555444445555554
Q ss_pred cCC
Q 008755 545 LGY 547 (554)
Q Consensus 545 ~~~ 547 (554)
+++
T Consensus 91 ~~D 93 (160)
T PF09613_consen 91 LGD 93 (160)
T ss_pred cCC
Confidence 444
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.15 E-value=0.019 Score=60.18 Aligned_cols=91 Identities=18% Similarity=0.030 Sum_probs=75.3
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
....|+.+-.++..|..+..+|+.++|++.|+++++..... .-.++.++.++..+.+|++|..++.+.++.+. +.
T Consensus 260 ~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WS 338 (468)
T PF10300_consen 260 LKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WS 338 (468)
T ss_pred HHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cH
Confidence 34467888899999999999999999999999999654433 23678899999999999999999999998754 44
Q ss_pred HH--HHHHHHHHHHcCCH
Q 008755 533 KA--YLRRGTAREMLGYY 548 (554)
Q Consensus 533 ~~--~~~~g~~~~~~~~~ 548 (554)
++ .|..|.|+..+++.
T Consensus 339 ka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 44 45568899999988
No 246
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.13 E-value=0.036 Score=43.50 Aligned_cols=65 Identities=22% Similarity=0.166 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCC
Q 008755 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGY 547 (554)
Q Consensus 483 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~g~~~~~~~~ 547 (554)
.+..+++.++.+|++..+.+.+|..++..|+|++|++.+-++++.++++ ..+.-.+-.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3556777777788888888888888888888888888888877777655 3444444444444443
No 247
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.12 E-value=0.034 Score=59.98 Aligned_cols=93 Identities=12% Similarity=-0.016 Sum_probs=79.8
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....|+..-+..-.|..+++.|++++|..+++..-...+++-..+..+-.||..++++++|...|++++..+|. -+..+
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~ 114 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY 114 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence 34556776777778899999999999998887776777778888888999999999999999999999999998 88888
Q ss_pred HHHHHHHHcCCHHH
Q 008755 537 RRGTAREMLGYYKE 550 (554)
Q Consensus 537 ~~g~~~~~~~~~~~ 550 (554)
.+-++|.+.+.|.+
T Consensus 115 ~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 115 HLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877754
No 248
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.11 E-value=0.0084 Score=54.38 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=56.3
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
...+.++.+.|.+.|++++++.|++..-|+.+|....+.|+++.|.+.|++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456789999999999999999999999999999999999999999999999999999764
No 249
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.98 E-value=0.038 Score=44.48 Aligned_cols=83 Identities=14% Similarity=0.290 Sum_probs=65.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHH
Q 008755 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 470 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~l~p~~~~~~ 535 (554)
++..++.+|++-+|++..+..+...+++. ..+..-|.+++++. -+..+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56788999999999999999999888765 44555566654332 15678999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHh
Q 008755 536 LRRGTAREMLGYYKEAI 552 (554)
Q Consensus 536 ~~~g~~~~~~~~~~~A~ 552 (554)
|.+|.=+.....|++++
T Consensus 82 ~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAV 98 (111)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 99988776666677664
No 250
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.052 Score=50.63 Aligned_cols=110 Identities=9% Similarity=-0.033 Sum_probs=81.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHH-HHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH
Q 008755 425 GGDRFLLDTVQNMYASLQEQA-DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 503 (554)
Q Consensus 425 ~~d~~ll~~a~~le~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 503 (554)
.+|..+.++++.+-....... ...+.-.+..-.++.+..+..+.-++.+.+..++|++|...++.+|..++++++.+.|
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 357777778887765543222 2222222333334455677889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHH-HHHHHcCCCCHHH
Q 008755 504 RAAAYLESGSFLQAEADC-TKAINLDKKNVKA 534 (554)
Q Consensus 504 ~a~~~~~~~~~~~A~~~~-~~al~l~p~~~~~ 534 (554)
+-.+-..+|+-.++...+ .+....+|.++-.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 999999999876666554 6666667776543
No 251
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.027 Score=57.97 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
..++..-+.+.++++|++|+....|.+...|++..++...-.|+.++++|++|+.+.++-..+.-.+ -.+|..+.|+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 5666677788899999999999999999999999999999999999999999996555433322222 223799999999
Q ss_pred cCCHHHHhc
Q 008755 545 LGYYKEAIE 553 (554)
Q Consensus 545 ~~~~~~A~~ 553 (554)
+++.++|+.
T Consensus 92 lnk~Dealk 100 (652)
T KOG2376|consen 92 LNKLDEALK 100 (652)
T ss_pred cccHHHHHH
Confidence 999999975
No 252
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.91 E-value=0.027 Score=62.70 Aligned_cols=89 Identities=10% Similarity=-0.009 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
+...|..+...+.+.|++++|++.+++. ...| +...|..+...+...|+++.|...+++.++++|++...|..+..+|
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 3456777888999999999999998764 2344 4567999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHhc
Q 008755 543 EMLGYYKEAIE 553 (554)
Q Consensus 543 ~~~~~~~~A~~ 553 (554)
.+.|++++|.+
T Consensus 539 ~~~G~~~~A~~ 549 (697)
T PLN03081 539 NSSGRQAEAAK 549 (697)
T ss_pred HhCCCHHHHHH
Confidence 99999999974
No 253
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.88 E-value=0.013 Score=35.16 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 497 (554)
..++.+|..++..+++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998863
No 254
>PLN03077 Protein ECB2; Provisional
Probab=95.86 E-value=0.048 Score=62.35 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
+...|..+...+.+.|++++|.+.+++. ...|+ ...|..+-.++...++.+.+....++.++++|++...|..++.+|
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 4467788888899999999999998874 35665 567777777777888899999999999999999999999999999
Q ss_pred HHcCCHHHHhc
Q 008755 543 EMLGYYKEAIE 553 (554)
Q Consensus 543 ~~~~~~~~A~~ 553 (554)
...|+|++|.+
T Consensus 702 a~~g~~~~a~~ 712 (857)
T PLN03077 702 ADAGKWDEVAR 712 (857)
T ss_pred HHCCChHHHHH
Confidence 99999999864
No 255
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.84 E-value=0.047 Score=37.85 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA 505 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 505 (554)
+.++.++..+++.|+|++|..+.+++|+.+|+|..+..-..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 35788899999999999999999999999999987765543
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.82 E-value=0.034 Score=56.45 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=67.4
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------------------------CHHHHHHHHHHHH
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------------------------NATYYSNRAAAYL 509 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------------~~~~~~~~a~~~~ 509 (554)
++.+.+|+-+.+|.-++... .....+|+++|+|+++.... ...+...+|+|..
T Consensus 193 eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar 270 (539)
T PF04184_consen 193 EALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR 270 (539)
T ss_pred HHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence 33444556666665554432 23455666666666643110 1234577899999
Q ss_pred HcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 510 ESGSFLQAEADCTKAINLDKK--NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 510 ~~~~~~~A~~~~~~al~l~p~--~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++|+.+||++.++..++.+|. +...++++-.+|..+++|.++.+
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999998875 56689999999999999988753
No 257
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.072 Score=51.58 Aligned_cols=82 Identities=12% Similarity=0.024 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
.+....++...+..-.|++|++.|++.|.-+|+......+++.||+++.-|+-+.+.+.--++..|++.-+...++..++
T Consensus 151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 35566677788888899999999999999999998889999999999999999999999999999999988887776665
Q ss_pred Hc
Q 008755 544 ML 545 (554)
Q Consensus 544 ~~ 545 (554)
++
T Consensus 231 Rl 232 (557)
T KOG3785|consen 231 RL 232 (557)
T ss_pred hh
Confidence 54
No 258
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.71 E-value=0.1 Score=39.07 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..+....+.|..++++++.++|+..++++++..++..+. +-.+..+|...|+|++.+++.-+=+++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999998876654 455677888999999999887665544
No 259
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.71 E-value=0.052 Score=53.70 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNN----------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
..+..+......|+|..|++++.+.-.+. |.. +-+-..+..||+++++-+-|+...-+.|-++|.+...
T Consensus 185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frn 264 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN 264 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence 33444444444555555555555544332 221 1245678999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHhc
Q 008755 535 YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~ 553 (554)
++..+.++..+.+|.+|-+
T Consensus 265 HLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 265 HLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999854
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.70 E-value=0.11 Score=47.57 Aligned_cols=88 Identities=24% Similarity=0.269 Sum_probs=73.4
Q ss_pred HHHHHHH-HHHHccCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Q 008755 466 IAKEKGN-QAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-NVKAYLRRGT 540 (554)
Q Consensus 466 ~~~~~g~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~~g~ 540 (554)
.....+. .+...+++++|+..|.+++..+| .....+..++..+...+++++++..+.++++..+. ....+..++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
T COG0457 131 AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL 210 (291)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhH
Confidence 3444444 78899999999999999988877 45666777777788889999999999999999998 6899999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
.+...+++++|+.
T Consensus 211 ~~~~~~~~~~a~~ 223 (291)
T COG0457 211 LYLKLGKYEEALE 223 (291)
T ss_pred HHHHcccHHHHHH
Confidence 9999988888764
No 261
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.11 Score=49.03 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
....++=..+.+.++++.|..+-++.+.++|+++.-+..+|.+|.+++.+.-|+++++..++.-|+.+.+-..+...
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34455566788899999999999999999999999999999999999999999999999999999998887665544
No 262
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.38 E-value=0.16 Score=58.46 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTA 541 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~g~~ 541 (554)
..|..+...|.+.|++++|+..|++..+. .|+ ...|+.+...|.+.|++++|++.++++.+.. +.+...|..+..+
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34444444455555555555555544433 232 3344555555555555555555555555442 1234455555555
Q ss_pred HHHcCCHHHHh
Q 008755 542 REMLGYYKEAI 552 (554)
Q Consensus 542 ~~~~~~~~~A~ 552 (554)
|.+.|++++|+
T Consensus 694 y~k~G~~eeA~ 704 (1060)
T PLN03218 694 CSNAKNWKKAL 704 (1060)
T ss_pred HHhCCCHHHHH
Confidence 55555555554
No 263
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.32 E-value=0.17 Score=58.24 Aligned_cols=87 Identities=10% Similarity=-0.014 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAYLRRGTA 541 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~~~~~~g~~ 541 (554)
..|..+-..|.+.|++++|++.|++..+.+ +.+...|+.+...|.+.|++++|+..|++..+. .| +...|..+..+
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a 658 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 344444445555555555555555555443 223445555555555555555555555555544 23 24445555555
Q ss_pred HHHcCCHHHHh
Q 008755 542 REMLGYYKEAI 552 (554)
Q Consensus 542 ~~~~~~~~~A~ 552 (554)
|.+.|++++|+
T Consensus 659 ~~k~G~~eeA~ 669 (1060)
T PLN03218 659 AGHAGDLDKAF 669 (1060)
T ss_pred HHhCCCHHHHH
Confidence 55555555554
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.27 E-value=0.24 Score=45.34 Aligned_cols=91 Identities=27% Similarity=0.305 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
.....+...+..+...+++++|+..+.++++..+. ....+..++.++...+++++|+..+.+++...|.....++.++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence 34555666666677888999999999999988888 68888889999988889999999999999988887777777777
Q ss_pred HHHHcCCHHHHh
Q 008755 541 AREMLGYYKEAI 552 (554)
Q Consensus 541 ~~~~~~~~~~A~ 552 (554)
.+...+.++++.
T Consensus 245 ~~~~~~~~~~~~ 256 (291)
T COG0457 245 LLLELGRYEEAL 256 (291)
T ss_pred HHHHcCCHHHHH
Confidence 777666566654
No 265
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.25 E-value=0.11 Score=57.99 Aligned_cols=90 Identities=10% Similarity=-0.050 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRR 538 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~ 538 (554)
.+...|..+...|.+.|++++|+..|++..+. .| +...|..+..++.+.+++++|.+.+++.++.. +.+...+..+
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 35567888888888888888888888877653 33 34566666677777777777777777776664 3445556666
Q ss_pred HHHHHHcCCHHHHh
Q 008755 539 GTAREMLGYYKEAI 552 (554)
Q Consensus 539 g~~~~~~~~~~~A~ 552 (554)
...|.+.|++++|.
T Consensus 367 i~~y~k~G~~~~A~ 380 (697)
T PLN03081 367 VDLYSKWGRMEDAR 380 (697)
T ss_pred HHHHHHCCCHHHHH
Confidence 66666666666664
No 266
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.23 E-value=0.028 Score=56.60 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h--------cC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-L--------NG---------NNATYYSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
.-..|+++|.++++.+.|..+..+|.|||+ . .| ...++.||.|..|+..|+...|.+++.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 445678999999999999999999999996 1 11 23578999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHc
Q 008755 525 INLDKKNVKAYLRRGTAREML 545 (554)
Q Consensus 525 l~l~p~~~~~~~~~g~~~~~~ 545 (554)
.+..-.++..|.+++.|..+.
T Consensus 362 v~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999987654
No 267
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.12 E-value=0.14 Score=49.94 Aligned_cols=105 Identities=11% Similarity=0.083 Sum_probs=72.0
Q ss_pred HhhhcccccccccChhhHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755 447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (554)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 525 (554)
..++..+..+..........|...+..-++ .++.+.|...|+.+++.-|.+...|......+.++++.+.|-..|++++
T Consensus 18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAI 97 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 333444444444445567788888888666 5666669999999999999999999999899999999999999999999
Q ss_pred HcCCCCH---HHHHHHHHHHHHcCCHHHH
Q 008755 526 NLDKKNV---KAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 526 ~l~p~~~---~~~~~~g~~~~~~~~~~~A 551 (554)
..-|... ..|.....--...|+.+..
T Consensus 98 ~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v 126 (280)
T PF05843_consen 98 SSLPKEKQSKKIWKKFIEFESKYGDLESV 126 (280)
T ss_dssp CTSSCHHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred HhcCchhHHHHHHHHHHHHHHHcCCHHHH
Confidence 8877654 2344444444555655543
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.12 E-value=0.12 Score=50.33 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------- 531 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------- 531 (554)
.....+|+++...+.++++++.|++|+++.-++ ..++..+|..+-+++||++|+-+..+|.++--..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 566778999999999999999999999885443 3578889999999999999999999999884321
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.-++|.++.+|..+|+.-+|.+
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHH
Confidence 3367889999999999877754
No 269
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.95 E-value=0.056 Score=35.12 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
.+++++|.+|..+|+|++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888876
No 270
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.92 E-value=0.23 Score=41.41 Aligned_cols=79 Identities=8% Similarity=0.012 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHc---cCHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 464 AEIAKEKGNQAYKD---KQWLKAISFYTEAIK-LNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 464 ~~~~~~~g~~~~~~---g~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
.+..++++.++.+. .+.++-+..++..++ -.|. .-+..+.++..++++++|++++.+++..|+.+|+|.++.-..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 35567777777664 456778899999996 4443 346778899999999999999999999999999999986554
Q ss_pred HHHH
Q 008755 539 GTAR 542 (554)
Q Consensus 539 g~~~ 542 (554)
-.+.
T Consensus 112 ~~ie 115 (149)
T KOG3364|consen 112 ETIE 115 (149)
T ss_pred HHHH
Confidence 4443
No 271
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.46 Score=49.73 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..+.+.+...|+..+|..+++.|...++.-|. +.....+++.||+.+.+.+.|.+.+++|=+.+|.++-..+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34556688889999999999999999987554 456788999999999999999999999999999998888888
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
-.+....+.-++|+.
T Consensus 435 ~~~~~~E~~Se~AL~ 449 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALT 449 (872)
T ss_pred HHHHHHhcchHHHHH
Confidence 888778888777763
No 272
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.54 E-value=0.45 Score=46.31 Aligned_cols=87 Identities=10% Similarity=-0.098 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
+|....+...+.+..++|...|.+|++..+....+|...|...+.. ++.+.|...|+.+++..|.+...+..+..-+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5666677777777788888999998866666778888888887774 455559999999999999888888888888888
Q ss_pred cCCHHHHh
Q 008755 545 LGYYKEAI 552 (554)
Q Consensus 545 ~~~~~~A~ 552 (554)
.++.+.|.
T Consensus 83 ~~d~~~aR 90 (280)
T PF05843_consen 83 LNDINNAR 90 (280)
T ss_dssp TT-HHHHH
T ss_pred hCcHHHHH
Confidence 88877664
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.48 E-value=2 Score=38.51 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHH--
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVKA-- 534 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~~-- 534 (554)
+.-..+..+|..|.+.|++++|++.|.++.+..-. -.+.+.++..+.+..++|..+..++.++-.+-. .++..
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 45678999999999999999999999998876533 245778888888999999999999999877643 23332
Q ss_pred --HHHHHHHHHHcCCHHHHhc
Q 008755 535 --YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 --~~~~g~~~~~~~~~~~A~~ 553 (554)
....|..+..+++|.+|-+
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~ 134 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAE 134 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHH
Confidence 2345777788888888753
No 274
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.44 E-value=0.077 Score=54.01 Aligned_cols=87 Identities=14% Similarity=-0.054 Sum_probs=73.7
Q ss_pred HHHHhhhcccccccccChhhHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008755 444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520 (554)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 520 (554)
.....++..+..+++..|.....+.+++.++++. |+.-.|+.....|+++||....+++.++.++.+++++.+|+++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3334444556666777788888899999888885 6788899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 008755 521 CTKAINLDKK 530 (554)
Q Consensus 521 ~~~al~l~p~ 530 (554)
...+....|.
T Consensus 468 ~~alq~~~Pt 477 (758)
T KOG1310|consen 468 HWALQMSFPT 477 (758)
T ss_pred HHHHhhcCch
Confidence 9988888884
No 275
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.29 E-value=0.33 Score=55.98 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------H
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V 532 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~ 532 (554)
......++..++..|++++|...++++++..+.. ..++..+|.++...|++++|...+++++.+.... .
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 4455567888999999999999999999865442 2356789999999999999999999999774321 3
Q ss_pred HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.++.+++.++..+|++++|.+
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~ 552 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYE 552 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHH
Confidence 456788999999999999864
No 276
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.26 E-value=0.51 Score=46.71 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
....+.--+...-+.|+++.|-.++.++-+..++ +-.++..++..+...++|+.|....+++++..|.+++++...-.+
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~ 196 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRA 196 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 3444555566777889999999999998888433 345677888888899999999999999999999999999888999
Q ss_pred HHHcCCHHHHh
Q 008755 542 REMLGYYKEAI 552 (554)
Q Consensus 542 ~~~~~~~~~A~ 552 (554)
|...|+|.+..
T Consensus 197 y~~~g~~~~ll 207 (400)
T COG3071 197 YIRLGAWQALL 207 (400)
T ss_pred HHHhccHHHHH
Confidence 99999888764
No 277
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.26 E-value=0.11 Score=33.68 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 494 (554)
+..+.++|..+...|++++|+.++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999999874
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.21 E-value=0.9 Score=38.84 Aligned_cols=75 Identities=9% Similarity=-0.063 Sum_probs=36.4
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (554)
Q Consensus 473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~ 547 (554)
......+.+++...+...--+.|+..++-..-|..+...|+|.+|+..++...+-.+..+.+--.++.|++.+++
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 333344555555555444444555555444455555555555555555555444444444444444444444443
No 279
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.99 E-value=0.23 Score=51.40 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
..++++.+.+.+...+|-..+.++|.++-..+-.++.+|..|+.+.+.+.|++.+++|++++|+++..-.-+-.+-+
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 45667777777777777778888887776666777788888888888888888888888888887776555444433
No 280
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.95 E-value=0.37 Score=55.58 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----- 530 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----- 530 (554)
...+..++..++..|++++|...++++++.... ....+..+|.+++..|++++|...+++++.+...
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 456678889999999999999999999876221 2234667888999999999999999999886332
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
...++..++.++...|++++|.+
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH
Confidence 24456678889999999988864
No 281
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.65 E-value=0.23 Score=38.94 Aligned_cols=65 Identities=5% Similarity=-0.030 Sum_probs=44.8
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADC 521 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~ 521 (554)
...+|++.+..+.++..++..|++++|++.+-++++.++++ -.+...+-.++-.+|.-+.....|
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 44578999999999999999999999999999999998775 445555555555555533333333
No 282
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.56 E-value=0.37 Score=38.16 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=47.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 472 NQAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
....+.++|.+|++.+.+.++.... ...+..++|.++...|++++|+..+++++++-.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3456789999999999988865322 235678899999999999999999999999854
No 283
>PLN03077 Protein ECB2; Provisional
Probab=93.51 E-value=0.48 Score=54.24 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVKAYLR 537 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~ 537 (554)
.+...|..+...|.+.|+.++|+..|++.++. .|+. ..|..+-.++.+.|++++|.+.+++..+..+ .+.+.|..
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 46678999999999999999999999998874 5654 4566666778899999999999999884432 24678889
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+..+|.+.|++++|.+
T Consensus 631 lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 631 VVDLLGRAGKLTEAYN 646 (857)
T ss_pred HHHHHHhCCCHHHHHH
Confidence 9999999999999974
No 284
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.04 Score=53.46 Aligned_cols=87 Identities=29% Similarity=0.380 Sum_probs=49.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcC-----------C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNG-----------N--------NATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..+.|+..++.++|+.|...|.++++.-- + -...+.+++.+-++++.+..|+-....+++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 34455666666666666666666654210 0 0123445555666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 528 DKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 ~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++...++||+++.++..+.++++|++
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~ 330 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALE 330 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHH
Confidence 66666666666666666666665554
No 285
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.04 E-value=0.73 Score=46.67 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
.-+..|...+....++.+...|...+-.||-..|.+ ..+-..-..-.++++++.+-..|++-|+-.|.+..++...|..
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 346778888888888999999999999999999986 3444444566788899999999999999999999999999988
Q ss_pred HHHcCCHHHHh
Q 008755 542 REMLGYYKEAI 552 (554)
Q Consensus 542 ~~~~~~~~~A~ 552 (554)
-..+|+.+.|.
T Consensus 481 E~~LgdtdRaR 491 (677)
T KOG1915|consen 481 ETSLGDTDRAR 491 (677)
T ss_pred HHHhhhHHHHH
Confidence 88888887764
No 286
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.02 E-value=0.13 Score=55.04 Aligned_cols=92 Identities=30% Similarity=0.405 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESG--SFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
.+......|+.+++.++|.+|...|..++.+-|. ....+.+.+.||++++ +|.+++..++-++...|...++++
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 3445666788999999999999889988888773 3556778888887665 799999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhcC
Q 008755 537 RRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~~ 554 (554)
.++.+|..+++++-|++|
T Consensus 132 ~r~~~y~al~k~d~a~rd 149 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRD 149 (748)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 999999998888777654
No 287
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=1.3 Score=41.20 Aligned_cols=65 Identities=23% Similarity=0.127 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
.+..+..-++.|...++|++|..++.||++-..+| ..+|.+.+....++..+.|+.++|++|..+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555555666666677777777777777554433 234555666666666666666666666655
No 288
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.96 E-value=0.67 Score=46.95 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
-+...|...|+--..+++++.|...|++||..+-.+...|...+.+-++.++..-|-...++|+.+-|.-.+.+|..-..
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45667888888888899999999999999999999999999999999999999999999999999999988899988888
Q ss_pred HHHcCCHHHHhc
Q 008755 542 REMLGYYKEAIE 553 (554)
Q Consensus 542 ~~~~~~~~~A~~ 553 (554)
-..+|+...|.+
T Consensus 151 EE~LgNi~gaRq 162 (677)
T KOG1915|consen 151 EEMLGNIAGARQ 162 (677)
T ss_pred HHHhcccHHHHH
Confidence 888888877653
No 289
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.95 E-value=1.6 Score=44.72 Aligned_cols=79 Identities=18% Similarity=0.098 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKNVKAYLRRGT 540 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~~~~~~~~g~ 540 (554)
.-+...++.++.+.|+.+||++.|+..++.+|. +..+++++..+++.++.|.++...+.+-=++ -|+.....|..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344566888999999999999999999988775 5679999999999999999999999885333 2566666666555
Q ss_pred HH
Q 008755 541 AR 542 (554)
Q Consensus 541 ~~ 542 (554)
..
T Consensus 339 Lk 340 (539)
T PF04184_consen 339 LK 340 (539)
T ss_pred HH
Confidence 43
No 290
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.86 E-value=2.5 Score=39.77 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHh
Q 008755 503 NRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 503 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A~ 552 (554)
..|..|++.|.|..|+.-+++.++..|+- .+++..+..+|..+|-.++|.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence 34555556666666666666666654432 345566666666666665553
No 291
>PRK10941 hypothetical protein; Provisional
Probab=92.83 E-value=0.34 Score=46.50 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~ 554 (554)
...|+=.+|.+.++|+.|+.+.+..+.++|+++.-+--+|.+|.++|.+..|..|
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~D 237 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSD 237 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3466777899999999999999999999999999999999999999999999865
No 292
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.82 E-value=0.18 Score=32.23 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
++|..+|.+-+..++|++|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888876
No 293
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.75 E-value=0.61 Score=45.61 Aligned_cols=89 Identities=20% Similarity=0.161 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------ATYYSNRAAAYLESGSFLQAEADCTKAINLD----- 528 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----- 528 (554)
-+.+..+|..+-+.+||++|+....||.++.... .-+.+.++.++.++|+.-+|.++++++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 4578889999999999999999999999874321 3467889999999999999999999998883
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 529 -KKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 529 -p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
+-+.....-+|.+|...|+.|.|.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHH
Confidence 223445566888888888876653
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.71 E-value=1.1 Score=40.17 Aligned_cols=68 Identities=19% Similarity=0.071 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
.-+-..++.+.++.|++++|+..++...+-+ ..+.....+|.++...|+-++|...|+++++.+++..
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 3445667888899999999998887753222 1234456789999999999999999999999875443
No 295
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.67 E-value=1.1 Score=40.17 Aligned_cols=88 Identities=16% Similarity=-0.028 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRG 539 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~g 539 (554)
......++..+...+++++|+..+++++....+. +-+-.+++.+.++++++++|+..++.... +.+.. ..-.+|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 4456677888899999999999999988543321 23557788899999999999988766433 22222 234578
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++...|+.++|+.
T Consensus 167 Dill~kg~k~~Ar~ 180 (207)
T COG2976 167 DILLAKGDKQEARA 180 (207)
T ss_pred hHHHHcCchHHHHH
Confidence 99999988887753
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=2.7 Score=38.86 Aligned_cols=91 Identities=23% Similarity=0.174 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC---
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKN--- 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~--- 531 (554)
+-+..|...+++| +..+..+|+.+++++|++--+- ...+..+|..|.. +.++++|+.+|+++-+.....
T Consensus 72 Daat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 72 DAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred hHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 3445555555555 4559999999999999885432 2234466777654 378999999998887764321
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
-+.+..-+.--.++++|.+|+.
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~ 175 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAID 175 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444555566777777764
No 297
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.71 Score=48.09 Aligned_cols=82 Identities=23% Similarity=0.036 Sum_probs=64.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCHHHHHHH------HHHH
Q 008755 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC-TKAINLDKKNVKAYLRR------GTAR 542 (554)
Q Consensus 470 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~-~~al~l~p~~~~~~~~~------g~~~ 542 (554)
+...+...++...+.....+++..+|++..++.+++.+....+..-.+...+ +.+.++.|++.+....+ +..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 4667777889999999999999999999999999999998888755555555 55999999999887776 4444
Q ss_pred HHcCCHHHH
Q 008755 543 EMLGYYKEA 551 (554)
Q Consensus 543 ~~~~~~~~A 551 (554)
..+++-.++
T Consensus 153 ~~l~~~~~~ 161 (620)
T COG3914 153 KLLGRTAEA 161 (620)
T ss_pred HHhccHHHH
Confidence 444444433
No 298
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=0.98 Score=43.77 Aligned_cols=96 Identities=10% Similarity=-0.042 Sum_probs=72.8
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVK 533 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~ 533 (554)
...|...-..-..+..+...|-|++|.+.-++++++|+.+.-+.-..+.++...++++++.++..+.-..=-+ ...
T Consensus 169 ~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH 248 (491)
T KOG2610|consen 169 ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH 248 (491)
T ss_pred CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence 3345555555566667788899999999999999999999988899999999999999999998774322111 123
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
.|+..+..+..-++|+.|++
T Consensus 249 NyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHhhhcccchhHHHH
Confidence 46667777777788888764
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=3.1 Score=38.72 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH--
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VK-- 533 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~-- 533 (554)
+..+-..+..+....++.|+..+|+||..+ .|+-...-...+-=..+..+.++|++.|++++.+--.. ..
T Consensus 71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 334444444455556666666666666655 22222222223333335556666666666666553211 11
Q ss_pred -HHHHHHHHHHHcCCHHHH
Q 008755 534 -AYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 534 -~~~~~g~~~~~~~~~~~A 551 (554)
.+-..+.+|.+++++++|
T Consensus 151 el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHHHHhhhHhhhhHHhhHH
Confidence 222334555666666555
No 300
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.05 E-value=0.64 Score=48.85 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=67.9
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHcCCHHHH
Q 008755 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK----AYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 476 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~----~~~~~g~~~~~~~~~~~A 551 (554)
...+.+.|.+.+++..+.-|+..-.....|..+...|+.++|++.+++++.......+ .+|.+++++..+.+|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3557788999999999999999989999999999999999999999999965444333 578999999999999999
Q ss_pred hc
Q 008755 552 IE 553 (554)
Q Consensus 552 ~~ 553 (554)
.+
T Consensus 325 ~~ 326 (468)
T PF10300_consen 325 AE 326 (468)
T ss_pred HH
Confidence 64
No 301
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.69 E-value=4 Score=33.46 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-------LNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
++..+--+...+...|+|++++..-+++|. ++.+. ..+-++++.++..+|+.++|+..|+++-+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455666777788999999999988888884 45553 345688999999999999999999998764
No 302
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.64 E-value=1.1 Score=45.71 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
.+...|.+......+.+.|.+--..|.++|..+|++++.|..-|.-.+..+. .+.|-+.+.++|+.+|+++..+.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 4677888877666666779999999999999999999999999999998886 99999999999999999988654
No 303
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.58 E-value=1.4 Score=44.61 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
....+...+..++.+|+|.++..+-....+++| .+.+|.-+|.|++..++|++|-.++.+.-. +-+-.+..-..+.++
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~l 538 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKALAL 538 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHHHH
Confidence 345566667788999999999999999999999 899999999999999999999998854221 222344455566666
Q ss_pred HHc
Q 008755 543 EML 545 (554)
Q Consensus 543 ~~~ 545 (554)
++.
T Consensus 539 CqK 541 (549)
T PF07079_consen 539 CQK 541 (549)
T ss_pred HHH
Confidence 543
No 304
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.49 E-value=0.86 Score=49.69 Aligned_cols=80 Identities=16% Similarity=0.042 Sum_probs=72.2
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
-....+++++|+....+.++..|+...+....|..++++|++++|..+++..-.+.+++-..+-.+-.+|..++++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 45667899999999999999999999999999999999999999998887777777788888999999999999999986
No 305
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.29 E-value=0.72 Score=29.08 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHcCC
Q 008755 500 YYSNRAAAYLESGSFLQAEAD--CTKAINLDK 529 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~--~~~al~l~p 529 (554)
.++.+|..+++.|+|++|+.. |+-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344455555555555555555 335555544
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.28 E-value=0.92 Score=39.47 Aligned_cols=74 Identities=11% Similarity=-0.003 Sum_probs=59.3
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 535 (554)
.|+.++.-...|..+..+|+|.+|+..++.+.+..|..+.+-..++.|++.+++.. =..+.+++++..+ ++.+.
T Consensus 40 RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~a~ 113 (160)
T PF09613_consen 40 RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPDAR 113 (160)
T ss_pred CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChHHH
Confidence 46788888889999999999999999999999999999999999999999998732 1123556676665 44443
No 307
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.21 E-value=4 Score=40.62 Aligned_cols=89 Identities=13% Similarity=0.033 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA--YLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
.+-++...++..+-.|+|++|...|+..+. +|+. ...-.+|.. ...+|+++.|.++.+.+-++-|.-+.+....-.
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 455677778888888999999988887653 4432 222223322 246788899999999999998888888877777
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
..+..|+|++|++
T Consensus 197 ~r~~~gdWd~Alk 209 (531)
T COG3898 197 ARCAAGDWDGALK 209 (531)
T ss_pred HHHhcCChHHHHH
Confidence 8888888888875
No 308
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.97 E-value=6.2 Score=36.58 Aligned_cols=78 Identities=15% Similarity=0.044 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHccCHHH-------HHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755 462 QSAEIAKEKGNQAYKDKQWLK-------AISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~-------A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 528 (554)
..+..+..++..+-..++.++ |+..|.++++.... ...+.+.+|.+++++|++++|+.++.+.+...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 567788888888888888554 44455555544322 25678899999999999999999999999864
Q ss_pred CCCH-HHHHHHH
Q 008755 529 KKNV-KAYLRRG 539 (554)
Q Consensus 529 p~~~-~~~~~~g 539 (554)
-.+. ..+..++
T Consensus 196 ~~s~~~~l~~~A 207 (214)
T PF09986_consen 196 KASKEPKLKDMA 207 (214)
T ss_pred CCCCcHHHHHHH
Confidence 3332 2444444
No 309
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.95 E-value=0.39 Score=45.87 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN-RAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
++++..|.....-..+.+.|.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++|+++|+++..|+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4677778877777777788888888899999999999988866 455566778899999999999999998877654
No 310
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.87 E-value=1.4 Score=42.33 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
...++..+...+...++++.++..+++.++.+|.+-.+|..+-..|++.|+...|+..|++.-++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34578888889999999999999999999999999999999999999999999999999987774
No 311
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=4.3 Score=38.18 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=82.7
Q ss_pred ccccChhhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHH
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVK 533 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~p~~~~ 533 (554)
.+..+|.+...|..+-+++-.. .+..+-++.++..++-+|.|.++|..+=.+...+++.. .-++.++.+|..+.+|..
T Consensus 69 ~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH 148 (318)
T KOG0530|consen 69 AIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH 148 (318)
T ss_pred HHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh
Confidence 3455778888888887776554 56778889999999999999999999999999999988 889999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHh
Q 008755 534 AYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~ 552 (554)
++..+-+++...+.|++-+
T Consensus 149 aWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 149 AWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred hhHHHHHHHHHHhhHHHHH
Confidence 9999999988888887643
No 312
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=3 Score=39.99 Aligned_cols=93 Identities=10% Similarity=-0.058 Sum_probs=66.6
Q ss_pred ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHH----------------------------------HHHhcCCCHH
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE----------------------------------AIKLNGNNAT 499 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~----------------------------------al~~~p~~~~ 499 (554)
.......+++.++...++.++...|+.++|...|.. .+..||++..
T Consensus 158 ~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~ 237 (304)
T COG3118 158 KQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVE 237 (304)
T ss_pred HHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHH
Confidence 333444556667777777788888888777666643 1234899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcC
Q 008755 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTAREMLG 546 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~g~~~~~~~ 546 (554)
+.+.+|..|...|++++|++.+-..++.+-. +..+.-.+-.++...|
T Consensus 238 aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 238 AALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 9999999999999999999999998888653 3444444555555544
No 313
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.45 E-value=0.49 Score=30.21 Aligned_cols=30 Identities=17% Similarity=0.384 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 494 (554)
+.+..+|..-+..++|++|+..|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999874
No 314
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.19 E-value=1 Score=43.59 Aligned_cols=62 Identities=21% Similarity=0.116 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 483 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
|+.+|.+|+.+.|++...|+++|.++...++.=+|+=+|-+++-..-.++.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999997766678889998888877
No 315
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=1.5 Score=41.04 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=65.6
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008755 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 549 (554)
Q Consensus 474 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~ 549 (554)
+.+..+-..|+.+-+.+|+++|.+..+|..+=.++..++ +..+-++++++.++-+|+|.+.+..+-.+...+|+..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 344566678999999999999999999998888887766 6889999999999999999999999988888887654
No 316
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.63 E-value=1.3 Score=27.92 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHHHhcCCC
Q 008755 465 EIAKEKGNQAYKDKQWLKAISF--YTEAIKLNGNN 497 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~--~~~al~~~p~~ 497 (554)
+.++..|-.+.++|+|++|+.. |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4678889999999999999999 55887787764
No 317
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.60 E-value=0.99 Score=45.93 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA-IKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINL----- 527 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----- 527 (554)
+.+..++-..+.++-.|+|.+|++.+... |+..|. ....|+|+|.++++++.|.-+..+|.+|++-
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999999999999987542 222332 2335799999999999999999999999961
Q ss_pred ----CC---------CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 528 ----DK---------KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 ----~p---------~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.| +..+..|+.|..|...|+.-.|.+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Afq 356 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQ 356 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHH
Confidence 12 357789999999999999877754
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.42 E-value=0.31 Score=50.44 Aligned_cols=83 Identities=20% Similarity=0.125 Sum_probs=74.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008755 471 GNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 549 (554)
Q Consensus 471 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~ 549 (554)
|..+...|+...|+.++..|+...|... ....++|+++.+-+-..+|...+.++|.++...+-.+|-+|.++..+++.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 4555668999999999999999998754 357889999999999999999999999999888999999999999999999
Q ss_pred HHhc
Q 008755 550 EAIE 553 (554)
Q Consensus 550 ~A~~ 553 (554)
.|++
T Consensus 694 ~a~~ 697 (886)
T KOG4507|consen 694 GALE 697 (886)
T ss_pred HHHH
Confidence 8875
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.39 E-value=1.6 Score=39.58 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEA 519 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~ 519 (554)
++++..+.+|..|. ..+.++|+..|.++|++... +++++..++.+|+++++++.|.-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 45666666665555 55777777777777766332 46677777777777777776643
No 320
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=0.25 Score=48.12 Aligned_cols=77 Identities=17% Similarity=0.018 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
..+.+.+...++.+.+..|+..-..+++.++....+++.+++.|+.+.++++|+++++.+....|++....-.+..+
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 33444677777888888888888888888888888888888888888888888888888888888876655444433
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.34 E-value=3.4 Score=41.11 Aligned_cols=82 Identities=7% Similarity=-0.095 Sum_probs=63.6
Q ss_pred ccccChhhHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKD------------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 523 (554)
...++|.+.+.|..+....-.. .-.+.-+..|++||+.+|++...+..+-.+..+..+-++..+-.++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455678888888776543222 1245667889999999999999888888888888899999999999
Q ss_pred HHHcCCCCHHHHHH
Q 008755 524 AINLDKKNVKAYLR 537 (554)
Q Consensus 524 al~l~p~~~~~~~~ 537 (554)
++..+|++...+..
T Consensus 91 ~l~~~~~~~~LW~~ 104 (321)
T PF08424_consen 91 LLFKNPGSPELWRE 104 (321)
T ss_pred HHHHCCCChHHHHH
Confidence 99999998776544
No 322
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.33 E-value=6.9 Score=39.79 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 505 a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|..++..|+|.++.-+..-..++.| ++.+|-.+|.++...++|++|.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445689999999999999999999 89999999999999999999964
No 323
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.30 E-value=4.9 Score=40.27 Aligned_cols=83 Identities=19% Similarity=0.036 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cC-C--------------------------------CHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NG-N--------------------------------NATYYSNRAAAY 508 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p-~--------------------------------~~~~~~~~a~~~ 508 (554)
.+...++.+..+...|+..+|+..++..++. .. . ...++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 6778888999999999999999999988871 10 0 124566666666
Q ss_pred HHc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755 509 LES------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (554)
Q Consensus 509 ~~~------~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~ 545 (554)
..+ +++++++..|+++++++|.+.++++..|..+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 667 7899999999999999999999999998887655
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.03 E-value=0.68 Score=26.65 Aligned_cols=21 Identities=29% Similarity=0.048 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 008755 501 YSNRAAAYLESGSFLQAEADC 521 (554)
Q Consensus 501 ~~~~a~~~~~~~~~~~A~~~~ 521 (554)
+.++|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555555555444
No 325
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.00 E-value=1.8 Score=37.10 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 513 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 513 (554)
.+....++...+..|+|.-|..+.+.++..+|++..+...++.+|.+++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999998877654
No 326
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=87.95 E-value=6.8 Score=45.32 Aligned_cols=88 Identities=10% Similarity=-0.115 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
....|..+-|....-|.-+.-.+.|++|.+.. +-..+|..+...|.+.+++++|.+.|+..++..-+....|..++..+
T Consensus 1496 KLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1496 KLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33444444444444455555556666666655 23456666666666666777777777766666665666666666666
Q ss_pred HHcCCHHHH
Q 008755 543 EMLGYYKEA 551 (554)
Q Consensus 543 ~~~~~~~~A 551 (554)
..+++-+.|
T Consensus 1575 l~~ne~~aa 1583 (1710)
T KOG1070|consen 1575 LRQNEAEAA 1583 (1710)
T ss_pred hcccHHHHH
Confidence 666554443
No 327
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.78 E-value=6.2 Score=39.87 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=62.9
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------c------------CCC---HHHHHHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------------N------------GNN---ATYYSNRAAA 507 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~~a~~ 507 (554)
...+|-..+.+..++.++.++|+++.|.+.+++||=. + ++| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999821 1 112 2345666677
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CHHH
Q 008755 508 YLESGSFLQAEADCTKAINLDKK-NVKA 534 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~-~~~~ 534 (554)
+.+.|.|..|+++++-.+.+||. ++.+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 78999999999999999999998 6554
No 328
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=86.71 E-value=2.4 Score=40.62 Aligned_cols=58 Identities=24% Similarity=0.179 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008755 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A 551 (554)
+..||+..+++|.++ .+.|+.++|...+++|+.+.|++++++..+|......++.-+|
T Consensus 112 ~~kEA~~Al~~A~~~---------------~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~A 169 (472)
T KOG3824|consen 112 KVKEAILALKAAGRS---------------RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEA 169 (472)
T ss_pred hhHHHHHHHHHHHHH---------------HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhh
Confidence 345666666666543 3688999999999999999999999999999998877766555
No 329
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.65 E-value=8.6 Score=38.73 Aligned_cols=85 Identities=11% Similarity=0.054 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcC
Q 008755 462 QSAEIAKEKGNQAYK---DKQWLKAISFYTEAI-KLNGNNATYYSNRAAAYLE---------SGSFLQAEADCTKAINLD 528 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~~~~a~~~~~---------~~~~~~A~~~~~~al~l~ 528 (554)
+.....+..+.++.+ .|+.++|+..+.+++ ...+.+++.+.-.|.+|-. ....++|+.+|.++++++
T Consensus 177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 455567777888888 899999999999955 4456678888888888742 224899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 008755 529 KKNVKAYLRRGTAREMLGY 547 (554)
Q Consensus 529 p~~~~~~~~~g~~~~~~~~ 547 (554)
|+.... .|++..+...|.
T Consensus 257 ~~~Y~G-IN~AtLL~~~g~ 274 (374)
T PF13281_consen 257 PDYYSG-INAATLLMLAGH 274 (374)
T ss_pred ccccch-HHHHHHHHHcCC
Confidence 765433 445555554443
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.54 E-value=0.92 Score=26.08 Aligned_cols=25 Identities=4% Similarity=-0.152 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTE 489 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~ 489 (554)
...+.+|..+...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4578899999999999999998863
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.59 E-value=7.2 Score=35.38 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHHHH
Q 008755 479 QWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~~~g~~~~~~~~~~~A 551 (554)
.-++|...|-++ +-.| +.++..+.+|..|. ..+-+++++.+-++|++... +++.+..++.++.++++++.|
T Consensus 121 ~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 335666666542 3333 46788888887665 67899999999999999654 588999999999999999987
No 332
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.43 E-value=14 Score=37.91 Aligned_cols=92 Identities=21% Similarity=0.040 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhc---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCH
Q 008755 462 QSAEIAKEKGNQA-YKDKQWLKAISFYTEAIKLN---GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 462 ~~~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~ 532 (554)
-.+.....+|..+ +...+.+.|..++++|..+- |.+ .++++.++.+|.+.. .+..+...+++++++....+
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 3456677777765 55789999999999998663 333 356788999999888 79999999999999987654
Q ss_pred ----HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 ----KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ----~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+..+.++..+...+++..|++
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~e 148 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALE 148 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHH
Confidence 456788999999999888864
No 333
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.71 E-value=12 Score=36.20 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----cCC---C-------HHHHHHHHHHHHHcCCHH---HHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKL----NGN---N-------ATYYSNRAAAYLESGSFL---QAEADCT 522 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~----~p~---~-------~~~~~~~a~~~~~~~~~~---~A~~~~~ 522 (554)
..-+..+++.|...+..+ +|++|...+++++++ .+. . ..++..++.+|++.+.++ +|....+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 356788999999999999 999999999999987 221 1 346778899999888754 4555555
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008755 523 KAINLDKKNVKAYLRRGTAREMLGYYKE 550 (554)
Q Consensus 523 ~al~l~p~~~~~~~~~g~~~~~~~~~~~ 550 (554)
.+-.-.|+.+..++..-.++...++.++
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhH
Confidence 5555568877777555555555444443
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.24 E-value=4 Score=35.00 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 513 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 513 (554)
.|+.++.-...|..+...|+|.+|+..++...+..+..+...-.++.|++.++|
T Consensus 40 rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 40 RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 467777888889999999999999999999998888888888889999999987
No 335
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=82.47 E-value=13 Score=43.28 Aligned_cols=83 Identities=8% Similarity=-0.034 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
....|..++..++++++-++|...+.+||+.-|. +.+.....|+.-++.|+-+.+...++-.+.-+|.....|.-+..
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 3455666666666666666666666666666665 55566666666666666666666666666666655555554444
Q ss_pred HHHHc
Q 008755 541 AREML 545 (554)
Q Consensus 541 ~~~~~ 545 (554)
.-.+.
T Consensus 1643 ~eik~ 1647 (1710)
T KOG1070|consen 1643 MEIKH 1647 (1710)
T ss_pred HHHcc
Confidence 43333
No 336
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.29 E-value=6.5 Score=39.48 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=75.0
Q ss_pred ccccccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHc
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG----SFLQAEADCTKAINL 527 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~l 527 (554)
......+|+..-+|+.+-..+.+++ ++..=+..++++++.||.+..+|..+=.++-+.. ...+-++++.++|.-
T Consensus 99 ~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~ 178 (421)
T KOG0529|consen 99 ESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIND 178 (421)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhc
Confidence 3345567899999999999998775 4688899999999999999998877766655433 268889999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 008755 528 DKKNVKAYLRRGTAREM 544 (554)
Q Consensus 528 ~p~~~~~~~~~g~~~~~ 544 (554)
++.|..++.++..++..
T Consensus 179 nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 179 NFSNYSAWHYRSLLLST 195 (421)
T ss_pred cchhhhHHHHHHHHHHH
Confidence 99999999998888763
No 337
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.92 E-value=5.8 Score=39.83 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~ 547 (554)
-.++-+.....+|+.+|+...+|+.+.-++.+.. ++..=++.+++++++||.|-.++..+-.+..+..+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 5566778888999999999999999999998777 38999999999999999999988777666655443
No 338
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.33 E-value=5.8 Score=37.93 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 525 (554)
..+...+..+...|.+.+|+.+.++++.++|=+.+.+..+-..+..+|+--+++..|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3455567788999999999999999999999999999999999999999888888776643
No 339
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.70 E-value=4.4 Score=30.35 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
+.+..+..++..+=+.|++++|+.+|+++|++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34566677777777788888888887777653
No 340
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=80.42 E-value=33 Score=36.75 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------------------NATYYSNRAAAYLESGSFLQAEADCT 522 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 522 (554)
.+-+..|.+.|..-+...+++.|+.+.++|...--. ...+|...+......|-++.....|+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 356888999999999999999999999998854211 24578888899999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 523 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
+.|.|.=.-++...|.|+.+.....++++.
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 999999888999999999988887777764
No 341
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.13 E-value=3.4 Score=39.29 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 501 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~ 554 (554)
..++=..|...++++.|....++.+.++|+++.-+--+|.+|.++|.+..|++|
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~d 237 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALED 237 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHH
Confidence 344555677889999999999999999999999999999999999999988865
No 342
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.94 E-value=6.7 Score=33.58 Aligned_cols=52 Identities=29% Similarity=0.261 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008755 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 549 (554)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~ 549 (554)
.+....++...+..|+|.-|.+.++.++..+|++.++...++.+|.+++.-.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4555667777888999999999999999999999999999999998887543
No 343
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.90 E-value=25 Score=35.29 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---cCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
-.-++...-...+..|+|+.|+++.++..+. .++-. ..+...+... ..-+...|..+..++++|.|+...+
T Consensus 187 l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPa 265 (531)
T COG3898 187 LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPA 265 (531)
T ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchH
Confidence 3334444445667789999999888765543 22211 1222222222 1235778888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHH
Q 008755 535 YLRRGTAREMLGYYKEA 551 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A 551 (554)
-..-+.+|...|+..++
T Consensus 266 av~AAralf~d~~~rKg 282 (531)
T COG3898 266 AVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHhccchhhh
Confidence 77778888887776654
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.79 E-value=19 Score=33.54 Aligned_cols=92 Identities=22% Similarity=0.185 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-----N-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK- 533 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~- 533 (554)
.+-++.+..-+|.|...++|..|=..|.++-++.- + -...|...+.|| +..+.++|+.++++++++.-+...
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHH
Confidence 45566677777888888888888888888775521 1 244566666676 455999999999999998654322
Q ss_pred -----HHHHHHHHHHHc-CCHHHHhc
Q 008755 534 -----AYLRRGTAREML-GYYKEAIE 553 (554)
Q Consensus 534 -----~~~~~g~~~~~~-~~~~~A~~ 553 (554)
.+..+|.+|..- .++++|+.
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~ 135 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIA 135 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence 234566666544 56666653
No 345
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.60 E-value=3.2 Score=42.17 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=39.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 471 GNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 471 g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
-..+.-.|||..|++.++. |+++ +-+...++..|.+|+++++|.+|+..+.+.|-
T Consensus 129 lRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 129 LRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888754 3332 22456788899999999999999988888764
No 346
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.43 E-value=8 Score=35.86 Aligned_cols=80 Identities=20% Similarity=0.143 Sum_probs=53.3
Q ss_pred HHHccCHHHHHHHHHHHHHh----cCCC---HHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCC------CHH
Q 008755 474 AYKDKQWLKAISFYTEAIKL----NGNN---ATYYSNRAAAYLESGS-------FLQAEADCTKAINLDKK------NVK 533 (554)
Q Consensus 474 ~~~~g~~~~A~~~~~~al~~----~p~~---~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~l~p~------~~~ 533 (554)
+-....+++|++.|.-||-. .... +..+..+|=+|..+++ +..|+..|+++++.... ...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 33445666777776666532 1121 3456667777777777 56666777777765432 256
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+|.+|....++|++++|++
T Consensus 167 l~YLigeL~rrlg~~~eA~~ 186 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKR 186 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 78899999999999999974
No 347
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.27 E-value=19 Score=31.84 Aligned_cols=79 Identities=11% Similarity=-0.030 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEA-IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
.+...-+..++..|.|++-....+.. -+.+|.-..+...+|.+.++.|+|.+|.++|++... +..-+....+++.+..
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 34444566667777777766555442 123444456777888888999999999999988666 5556666677776654
Q ss_pred H
Q 008755 544 M 544 (554)
Q Consensus 544 ~ 544 (554)
.
T Consensus 212 d 212 (221)
T COG4649 212 D 212 (221)
T ss_pred H
Confidence 3
No 348
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.87 E-value=6.1 Score=23.32 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008755 478 KQWLKAISFYTEAIKLNGNNATYYSNRAA 506 (554)
Q Consensus 478 g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 506 (554)
|+++.|...|+++++..|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777777777777777777766543
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.71 E-value=25 Score=36.12 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=61.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008755 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 550 (554)
Q Consensus 471 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~ 550 (554)
-......|+...|-.....+|+..|.++.....++.+...+|+|+.+.+++.-+=+.-..-..+.-.+-..+..++++++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 33456679999999999999999999998888889999999999999988865544433333444445555667777777
Q ss_pred Hh
Q 008755 551 AI 552 (554)
Q Consensus 551 A~ 552 (554)
|.
T Consensus 376 a~ 377 (831)
T PRK15180 376 AL 377 (831)
T ss_pred HH
Confidence 64
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.63 E-value=6.6 Score=35.97 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=34.3
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.+.+.++.++|+...++-++.+|.+......+=+.|.-.|+|++|...++-+-+++|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34555555666666666666666655555555555555666666666666666665554
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.45 E-value=24 Score=34.09 Aligned_cols=72 Identities=21% Similarity=0.108 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|..=+...+++++. ....++..++..+...++++.++..+++.+.++|-+-..|..+-.+|...|+...|+.
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~ 208 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIR 208 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHH
Confidence 44445555555543 3567888899999999999999999999999999999999999999999999888864
No 352
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.39 E-value=4.3 Score=30.45 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
.+..+...|...=..|+|++|+.+|.++|+.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 4555666777777788888888888888865
No 353
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=77.98 E-value=13 Score=39.12 Aligned_cols=87 Identities=18% Similarity=0.076 Sum_probs=67.3
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhcCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE-AIKLNGNNATYYSNR------AAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~------a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
+..+++++..+.+++......|..-.++..+.+ +....|++......+ +...-.+++-.++....+++.++.|
T Consensus 94 l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 94 LSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred HhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 445677888899999988878777777766665 888889887766665 7777788888999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 008755 530 KNVKAYLRRGTARE 543 (554)
Q Consensus 530 ~~~~~~~~~g~~~~ 543 (554)
+++...-.+.....
T Consensus 174 ~~~~~~~~~~~~r~ 187 (620)
T COG3914 174 KYPRVLGALMTARQ 187 (620)
T ss_pred hhhhhHhHHHHHHH
Confidence 98776655554433
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=77.92 E-value=21 Score=39.24 Aligned_cols=88 Identities=15% Similarity=0.063 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH----------HhcCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAI----------KLNGN----------NATYYSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al----------~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
..|++.+..+-..++.+.|+++|+|+- .-+|. +...|.--|+.+...|+.+.|+..|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 457888888888999999999999753 22332 3456666788888999999999999887
Q ss_pred HHc---------------------CCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 525 INL---------------------DKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 525 l~l---------------------~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
-.. ...+..+-|.+|..|...|+..+|+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHH
Confidence 644 3456678899999999999988886
No 355
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.67 E-value=10 Score=28.39 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008755 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546 (554)
Q Consensus 482 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~ 546 (554)
.|..+..+|++.|-.. .+.-| .-.|++|++.+.+++++.|++......+..+...+.
T Consensus 5 ~A~~~a~~AVe~D~~g---r~~eA-----i~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~ 61 (75)
T cd02682 5 MARKYAINAVKAEKEG---NAEDA-----ITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKR 61 (75)
T ss_pred HHHHHHHHHHHHHhcC---CHHHH-----HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4666666666665321 01111 112455555555666667777766555555544433
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.53 E-value=11 Score=40.66 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
+++.|+.+|.++-+.. ++.+.+.+|.+|..-. ++..|.++|..|-+. .+..++++++.+|
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y 370 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCY 370 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence 4455555555554443 3344455555554333 345555555555443 3445555555554
No 357
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.39 E-value=18 Score=35.10 Aligned_cols=77 Identities=18% Similarity=0.101 Sum_probs=58.8
Q ss_pred HHHccCHHHHHHHHHHHHHhc----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC----C---CC------
Q 008755 474 AYKDKQWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINLD----K---KN------ 531 (554)
Q Consensus 474 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~----p---~~------ 531 (554)
..++|+++.|..+|.|+=.+. |+. +..+++.|...++.+ +|++|..++++++++- . ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999976554 332 457899999999999 9999999999999882 1 11
Q ss_pred -HHHHHHHHHHHHHcCCHHH
Q 008755 532 -VKAYLRRGTAREMLGYYKE 550 (554)
Q Consensus 532 -~~~~~~~g~~~~~~~~~~~ 550 (554)
...+..++.+|...+.++.
T Consensus 83 r~~iL~~La~~~l~~~~~~~ 102 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYES 102 (278)
T ss_pred HHHHHHHHHHHHHcCCChHH
Confidence 2345667888888777654
No 358
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.36 E-value=17 Score=39.24 Aligned_cols=85 Identities=20% Similarity=0.105 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 462 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
.++...+.+|..++... ++..|..+|..|.+. .+..+++++|.||.. ..+.+.|..++.++-+.+ ++.+
T Consensus 323 g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A 398 (552)
T KOG1550|consen 323 GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSA 398 (552)
T ss_pred CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chhh
Confidence 45677888888887765 678999999999766 478999999999963 347999999999999988 5677
Q ss_pred HHHHHHHHHHc-CCHHH
Q 008755 535 YLRRGTAREML-GYYKE 550 (554)
Q Consensus 535 ~~~~g~~~~~~-~~~~~ 550 (554)
.+.++..+... ++++.
T Consensus 399 ~~~~~~~~~~g~~~~~~ 415 (552)
T KOG1550|consen 399 AYLLGAFYEYGVGRYDT 415 (552)
T ss_pred HHHHHHHHHHccccccH
Confidence 77776665433 44433
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.22 E-value=10 Score=28.59 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHcCCHHHHhc
Q 008755 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL---RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 501 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~---~~g~~~~~~~~~~~A~~ 553 (554)
....|.=++...+.++|+...+++++..++...-+- .+..+|...|+|++.++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667888999999999999999887666443 45677899999998864
No 360
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=77.05 E-value=9 Score=39.88 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=64.1
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..++++|.+.+.|+.+-..+..+ .+++..+.|++.+..-|..+.+|.....-.+..++|+.....+.++|.-
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34677899999999988777666 9999999999999999999999999999999999999999999998853
No 361
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.98 E-value=18 Score=35.22 Aligned_cols=54 Identities=24% Similarity=0.197 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 482 KAISFYTEAIKLNGNNATYYSNRAAAYLES-G---SFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 482 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~---~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
+|+..|.++-+.. +..+.+++|.+|..- | ++++|+.+|+++-+... ..+.++++
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 4444555444443 444555555444322 2 35555555555555443 44555555
No 362
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.49 E-value=14 Score=37.07 Aligned_cols=70 Identities=19% Similarity=0.060 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------HHHH
Q 008755 461 KQSAEIAKEKGNQAYKD------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------------FLQA 517 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-----------------~~~A 517 (554)
...++.+..+|.-.... +++++++..|+++++++|+...+|+..|..+.++=+ ...|
T Consensus 249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 328 (352)
T PF02259_consen 249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQA 328 (352)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHH
Confidence 45677888888877777 999999999999999999999999999888864422 2348
Q ss_pred HHHHHHHHHcCCC
Q 008755 518 EADCTKAINLDKK 530 (554)
Q Consensus 518 ~~~~~~al~l~p~ 530 (554)
+..|-+++.+.++
T Consensus 329 i~~y~~al~~~~~ 341 (352)
T PF02259_consen 329 IEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHhhCCC
Confidence 8888888888877
No 363
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.75 E-value=5.6 Score=29.94 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
..+..+..++..+=+.|+|++|+.+|.++|+.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556777788888888898888888888865
No 364
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=75.26 E-value=16 Score=29.72 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 513 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 513 (554)
+........|...+..|||++|.+...++-+..++..-.|..-+.+-.++||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 5567778889999999999999999999977765555555555666666554
No 365
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.70 E-value=6.8 Score=28.75 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
.+..+...|..+=+.|+|++|+.+|.++++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556667777777788888888888877754
No 366
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.28 E-value=8.5 Score=28.25 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
+++|+...++|++.| ..|+|++|+.+|.++++.
T Consensus 2 ~~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 2 LDKAIELIKKAVEAD---------------EAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHHH
Confidence 356667777777665 355555555555555543
No 367
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=74.17 E-value=26 Score=37.42 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008755 427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA 506 (554)
Q Consensus 427 d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 506 (554)
++.+..+.+......+++...................+...+..+..+-.-++.++|-.+|++.+..+|+ ..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 82 (578)
T PRK15490 5 EEKLAALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYAR 82 (578)
T ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHH
Confidence 4555566665544444433332222222222333456777888899999999999999999999999998 56777788
Q ss_pred HHHHcCCHHHHHHHHH
Q 008755 507 AYLESGSFLQAEADCT 522 (554)
Q Consensus 507 ~~~~~~~~~~A~~~~~ 522 (554)
-++..|-...|...++
T Consensus 83 ~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 83 RLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHhhhhhhHHHHHHH
Confidence 8888888888877776
No 368
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=74.14 E-value=6.2 Score=29.96 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
+..+.+.|..+-..|+.++|+.+|+++++.
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 444555555555555666666666555543
No 369
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.73 E-value=19 Score=34.17 Aligned_cols=63 Identities=8% Similarity=0.016 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--N----NATYYSNRAAAYLESGSFLQAEADCTKAI 525 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al 525 (554)
......++|..|+..|+|++|+..|+++...-- . ...+...+..|+.++|+.++.+..+-+.+
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345677899999999999999999999965422 1 24567788899999999998888775543
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.30 E-value=6.8 Score=25.93 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 502 SNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 502 ~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
+++|.+|.++|+++.|...+++.+.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 371
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.09 E-value=40 Score=32.72 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 463 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
+..+.+.+|..|.. ..++++|...|.++-+... ....++++ +++..|.-.........+...++.....++..
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~ 262 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK 262 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence 56678888877765 4599999999999999875 78888888 77777743333223333333333333333433
Q ss_pred H
Q 008755 539 G 539 (554)
Q Consensus 539 g 539 (554)
+
T Consensus 263 ~ 263 (292)
T COG0790 263 A 263 (292)
T ss_pred H
Confidence 3
No 372
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=71.88 E-value=61 Score=32.79 Aligned_cols=83 Identities=13% Similarity=-0.066 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHcCCCCHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLE---SGSFLQAEADCTK-AINLDKKNVKA 534 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-al~l~p~~~~~ 534 (554)
.+++..++=..|....+|+.-+.+.+..=.+ -++...+.+.+|.++.+ .|+.++|++.+.+ ..+..+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3556667777888889999988888876555 34566778899999998 8999999999999 55556778999
Q ss_pred HHHHHHHHHHc
Q 008755 535 YLRRGTAREML 545 (554)
Q Consensus 535 ~~~~g~~~~~~ 545 (554)
+...|.+|-..
T Consensus 220 ~gL~GRIyKD~ 230 (374)
T PF13281_consen 220 LGLLGRIYKDL 230 (374)
T ss_pred HHHHHHHHHHH
Confidence 99999888544
No 373
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.19 E-value=17 Score=30.66 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR 504 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 504 (554)
.+-+..+.++..+++.++|++++.+.+..|+.+|+|.++....
T Consensus 69 ~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 69 RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4556788899999999999999999999999999998765543
No 374
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.96 E-value=76 Score=32.17 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C----CCH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLD----K----KNV 532 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p----~~~ 532 (554)
-.++..+|.-|+..|+.+.|+++|.++-...-. -...+.|.-.+-..+++|-....+..+|...- . -..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 467888999999999999999999997655433 23456777777778999999998888887752 0 012
Q ss_pred HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+....-|.+...+++|+.|.+
T Consensus 230 kl~C~agLa~L~lkkyk~aa~ 250 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAK 250 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 345566777777788887754
No 375
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.39 E-value=8.6 Score=39.33 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=43.9
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
...+|.++......+.++...|+|+.+...+.-+=..-..-..+...+-..++++++|++|....+-.+.-+-+.
T Consensus 316 lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~ 390 (831)
T PRK15180 316 LRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIED 390 (831)
T ss_pred HHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCC
Confidence 344456666666677788888999988887754332222222333333344556677777776666655544333
No 376
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.07 E-value=11 Score=28.32 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 481 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..|+.+..+|++.| +.|+|++|+.+|.+++++
T Consensus 4 ~~Ai~~a~~Ave~D---------------~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRD---------------QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHHH
Confidence 35677777777766 355666666666665544
No 377
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.04 E-value=14 Score=35.44 Aligned_cols=52 Identities=25% Similarity=0.160 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008755 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A 551 (554)
.+...+..|.+.|.+.+|++.++++++++|-+-+.+..+-.+|..+|+--.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~ 332 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISA 332 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhh
Confidence 3456778889999999999999999999999999888888888888874333
No 378
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=68.48 E-value=68 Score=32.46 Aligned_cols=68 Identities=10% Similarity=0.051 Sum_probs=48.5
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY------YSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
...+.+.+..++.+|.+..-+.+|..|.+++-+|++..|++... .--...+-..+|++.+-..+.+..
T Consensus 240 ~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~ 313 (493)
T KOG2581|consen 240 AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPG 313 (493)
T ss_pred ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCcc
Confidence 34455888999999999999999999999999999999975322 111222334567766655554443
No 379
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=68.42 E-value=23 Score=39.02 Aligned_cols=54 Identities=22% Similarity=0.157 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------HHcCCCCHH----------HHHHHHHHHHHcCCHHHHh
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKA----------INLDKKNVK----------AYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~l~p~~~~----------~~~~~g~~~~~~~~~~~A~ 552 (554)
..|++.|.-+...++.+.|+++|+|+ |+-+|...+ .|...|.-+...|+.+.|+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 45888898888999999999999873 333443332 3444577777778777775
No 380
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=67.90 E-value=36 Score=35.45 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
++...|..+|..++.+|+++-|.++|+++-+ +..+...|.-.|+-+.-.+..+.+.+.
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 4667999999999999999999999998632 234555666677765555555554443
No 381
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=67.43 E-value=13 Score=28.14 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
.+..+...|...=+.|+|++|+.+|.++|+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556677778888888888888888887754
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.34 E-value=17 Score=28.57 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=37.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 508 YLESGSFLQAEADCTKAINLDKK---------NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~---------~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+.++|.+|++.+.+.+..... ...+..+++.++...|++++|++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~ 62 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQ 62 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45789999999988888876432 24577889999999999999974
No 383
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.92 E-value=29 Score=35.05 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=50.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------C------------CCC---HHHHHHHHH
Q 008755 490 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--------------D------------KKN---VKAYLRRGT 540 (554)
Q Consensus 490 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------------~------------p~~---~~~~~~~g~ 540 (554)
.|+.+|.+.+.+.+++.++.++|+++.|.+.+++||-. + +.| ..++++...
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35679999999999999999999999999999998733 1 122 224566777
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
.+.+.|-++-|++
T Consensus 112 ~L~~RG~~rTAlE 124 (360)
T PF04910_consen 112 SLGRRGCWRTALE 124 (360)
T ss_pred HHHhcCcHHHHHH
Confidence 8888888887764
No 384
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.60 E-value=11 Score=34.61 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHH---
Q 008755 437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLE--- 510 (554)
Q Consensus 437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~--- 510 (554)
+++.++.+.....+.........+|.++.....+-+.+.-.|+|++|+..++-+-++.|++. +.|.++-.|...
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~e 87 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNE 87 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555566778888888888899999999999999999999999863 455555555431
Q ss_pred ----------cC-CHHHHHHHHHHHHHcCCC
Q 008755 511 ----------SG-SFLQAEADCTKAINLDKK 530 (554)
Q Consensus 511 ----------~~-~~~~A~~~~~~al~l~p~ 530 (554)
+| ...+=+..+.+++.++.+
T Consensus 88 vfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 88 VFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 22 444555555666666554
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.83 E-value=44 Score=31.74 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHcCCHHHHh
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--N----VKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~----~~~~~~~g~~~~~~~~~~~A~ 552 (554)
.+...+|.-|+..|+|++|++.++++....-. . ...+..+-.|...+|+.++.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45578999999999999999999999765332 1 335667888888999887764
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.60 E-value=24 Score=32.03 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 481 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
+..++..++.++..| ++..+.+++.++..+|+.++|.+..+++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344455667777777 478899999999999999999999999999999
No 387
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=65.22 E-value=40 Score=27.90 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHH----HHH
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTK----AIN 526 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~----al~ 526 (554)
.+..+|+..++.+++-.++-+|++|+.+..+. ...--|+|..|..+|+-+=.+.+++- .+.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999763321 11246799999999998888888765 455
Q ss_pred cCCC
Q 008755 527 LDKK 530 (554)
Q Consensus 527 l~p~ 530 (554)
|-|.
T Consensus 83 LiPQ 86 (140)
T PF10952_consen 83 LIPQ 86 (140)
T ss_pred hccC
Confidence 5554
No 388
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.64 E-value=4.6 Score=37.26 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=38.8
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 497 (554)
+++...-.|+...-|+.+|....+.|+++.|...|++.++++|.+
T Consensus 18 y~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 18 YNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred HHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 334444457889999999999999999999999999999999986
No 389
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.17 E-value=14 Score=27.70 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
+.++|+.+.++|++.| ..|+|++|+..|.+++++
T Consensus 2 ~l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 3567888888887665 367888888888888876
No 390
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.16 E-value=33 Score=39.20 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHc-------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 463 SAEIAKEKGNQAYKD-------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~-------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
--++.+..|..++.+ ..+++|+..|++ |.-.|.-+-=|...|.+|..+++|+|-+++|.-|++..|+++..
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 511 GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 345677777766543 257788888877 44556667778889999999999999999999999999988664
No 391
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=64.15 E-value=14 Score=27.67 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
.+..+...|...-..|+|++|+.+|.++|+.
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455666677777778888888888777754
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.85 E-value=18 Score=21.15 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 512 GSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 512 ~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
++++.+...|+++++..|.+...+.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46789999999999999988888876654
No 393
>PF13041 PPR_2: PPR repeat family
Probab=63.65 E-value=37 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..|+.+-..|.+.|++++|.+.+++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555555555666666666666555544
No 394
>PF12854 PPR_1: PPR repeat
Probab=62.54 E-value=19 Score=22.12 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008755 498 ATYYSNRAAAYLESGSFLQAEADCTK 523 (554)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~A~~~~~~ 523 (554)
...|+.+-..|.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34566666666666666666666654
No 395
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=62.16 E-value=17 Score=27.23 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
.+..+...|...=..|+|++|+.+|.++++.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556677777777888888888888887754
No 396
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=62.00 E-value=12 Score=28.14 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
.+..+...+...=..|+|++|+.+|.++|+.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445566666666777777777777777754
No 397
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=61.95 E-value=55 Score=27.70 Aligned_cols=61 Identities=18% Similarity=0.077 Sum_probs=33.7
Q ss_pred HHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 467 AKEKGNQA-YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 467 ~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
|..++.-+ .++|+-++=.+.++...+-+..+++.+..+|.+|-++|+-.++-+.+.+|.+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44444433 33444444444555554444456777777888888888888888777777764
No 398
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=61.94 E-value=20 Score=26.89 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhc
Q 008755 481 LKAISFYTEAIKLN 494 (554)
Q Consensus 481 ~~A~~~~~~al~~~ 494 (554)
++|+.++++|++.|
T Consensus 4 ~~A~~l~~~Av~~D 17 (75)
T cd02678 4 QKAIELVKKAIEED 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666667766554
No 399
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=61.13 E-value=17 Score=29.58 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (554)
Q Consensus 480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 528 (554)
...++++|.++..+.|+.+..++.+|.-+-....|+++..-++++|...
T Consensus 60 Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 60 LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 3468999999999999998888989888777778999999999998764
No 400
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.62 E-value=67 Score=33.32 Aligned_cols=89 Identities=20% Similarity=0.078 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-N--ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------- 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------- 531 (554)
..+..++-+|..-..-+.|+.|...|..|.++-.. + .-+..|+|..|+..++-+.-.+.++ .+.|.|
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQ 441 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHH
Confidence 45777888888888899999999999999987533 2 3355789999998776553333222 234442
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..++|-.|...+.++++.||..
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~ 466 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKR 466 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3467888999999999999863
No 401
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.38 E-value=1.8e+02 Score=28.88 Aligned_cols=100 Identities=12% Similarity=0.017 Sum_probs=70.2
Q ss_pred ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCC
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE---SGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~l~p~ 530 (554)
..+...+|++...+..+-....+.-+.++....+++++..+|++...|..+-...+. .-.+.+....|.++|+.-..
T Consensus 55 erAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 55 ERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 334444677777777777777777788888999999999999999988665444333 23577888888887765221
Q ss_pred ------------------CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 ------------------NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ------------------~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
....+.++...+.+.|..+.|+.
T Consensus 135 ~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 135 RRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred hhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 12345566777788888888764
No 402
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=59.92 E-value=22 Score=26.64 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
.+..+...|..+=..|++++|+.+|.++++.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666677777788888888888877754
No 403
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=59.38 E-value=21 Score=36.01 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
.+.-.+..+|++.++.+-|+.+-.+.|.++|.+..-+...|.|...+.+|.+|...+--+.-
T Consensus 229 fIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 229 FIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999887765543
No 404
>PF12854 PPR_1: PPR repeat
Probab=59.07 E-value=21 Score=21.85 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTE 489 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ 489 (554)
+...|..+-..+.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456788889999999999999999875
No 405
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.92 E-value=2.8e+02 Score=30.41 Aligned_cols=91 Identities=16% Similarity=0.072 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---
Q 008755 461 KQSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLNGN--NA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--- 530 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--- 530 (554)
..++...+.+|..++ ...++++|..+++|++.+... .. .+.+-++.+|.+.+... |+..+++.++..-.
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 367889999999998 679999999999999988643 33 23456778887877766 99999999987654
Q ss_pred -CHHHHHHHH-HHHHHc-CCHHHHh
Q 008755 531 -NVKAYLRRG-TAREML-GYYKEAI 552 (554)
Q Consensus 531 -~~~~~~~~g-~~~~~~-~~~~~A~ 552 (554)
.+...|++- ..+... +++..|+
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al 159 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAAL 159 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHH
Confidence 233333333 223322 4666664
No 406
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=58.86 E-value=70 Score=34.73 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
..-+++.+.|..+....+|++|.++|.+.-. ..+...||+.+++|++-.. ..+.-|++.+.+=.+|.+
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEV----LARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHH
Confidence 4456788889888888999999999877532 2345667777777775443 334457777777777887
Q ss_pred HHHcCCHHHHhc
Q 008755 542 REMLGYYKEAIE 553 (554)
Q Consensus 542 ~~~~~~~~~A~~ 553 (554)
+...|.-++|++
T Consensus 862 f~svGMC~qAV~ 873 (1189)
T KOG2041|consen 862 FTSVGMCDQAVE 873 (1189)
T ss_pred HHhhchHHHHHH
Confidence 777777777754
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.78 E-value=92 Score=34.85 Aligned_cols=88 Identities=16% Similarity=0.076 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---- 531 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---- 531 (554)
......+..+..+.+|.+|..++.++-..-+. ..+...-+|.+....++.++|++..+.++..-|.+
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 33444455555555666665555554433222 12223334555555556666666666666555533
Q ss_pred -HHHHHHHHHHHHHcCCHHHHh
Q 008755 532 -VKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 532 -~~~~~~~g~~~~~~~~~~~A~ 552 (554)
..++...|.+..-.|++++|.
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al 517 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQAL 517 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHH
Confidence 223444555555555555553
No 408
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.76 E-value=32 Score=35.30 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=21.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755 509 LESGSFLQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 509 ~~~~~~~~A~~~~~~al~l~p~~~~~~ 535 (554)
++.++|..|....++.|+++|....+-
T Consensus 311 ~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 311 FKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp CCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 488899999999999999999765543
No 409
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=58.47 E-value=12 Score=38.26 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 503 NRAAAYLESGSFLQAEADCTKAINLD---------KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 503 ~~a~~~~~~~~~~~A~~~~~~al~l~---------p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+..++..+|||..|++.++. ++++ +.+...+|..|.+|.++++|.+|++
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir 185 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIR 185 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHH
Confidence 345567789999999998865 3333 3456679999999999999999985
No 410
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=58.24 E-value=37 Score=38.81 Aligned_cols=83 Identities=20% Similarity=0.226 Sum_probs=64.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 470 KGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLES----G---SFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 470 ~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~----~---~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.-.+++..+.|++|+..|++.-..-|.- .++.+..|.+.++. + .+.+|+..+++ |.-.|.-+--|...+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHH
Confidence 3456777899999999999999888764 45778888887643 2 37777777766 455667777899999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.+|..+++|+|-++
T Consensus 560 ~~~~~~~~~~~~~~ 573 (932)
T PRK13184 560 LVYQRLGEYNEEIK 573 (932)
T ss_pred HHHHHhhhHHHHHH
Confidence 99999999998654
No 411
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.00 E-value=32 Score=32.71 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=44.6
Q ss_pred HHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 475 YKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 475 ~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
++..++++|+..|++.+++.+.- ..++-++-.+++.+++|++-+..|.+.+..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 44569999999999999998764 357788888999999999999999887754
No 412
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=57.87 E-value=22 Score=26.97 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=14.9
Q ss_pred cCHHHHHHHHHHHHHhcCC
Q 008755 478 KQWLKAISFYTEAIKLNGN 496 (554)
Q Consensus 478 g~~~~A~~~~~~al~~~p~ 496 (554)
+.|++|.+..++||+.+..
T Consensus 3 ~~~~~A~~~I~kaL~~dE~ 21 (79)
T cd02679 3 GYYKQAFEEISKALRADEW 21 (79)
T ss_pred hHHHHHHHHHHHHhhhhhc
Confidence 5678888888888888743
No 413
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=57.77 E-value=18 Score=20.93 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 501 YSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 501 ~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
|+.+-.+|.+.+++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44455555556666666666555443
No 414
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=57.58 E-value=38 Score=20.12 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Q 008755 484 ISFYTEAIKLNGNNATYYSNRAAAY 508 (554)
Q Consensus 484 ~~~~~~al~~~p~~~~~~~~~a~~~ 508 (554)
+....++|..+|.+..+|..+-.+.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 3444555555565555555554443
No 415
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.43 E-value=72 Score=33.24 Aligned_cols=66 Identities=6% Similarity=0.062 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (554)
Q Consensus 482 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~ 547 (554)
.-+..|+.|+..-+.+...|.+....-.+.+.|.+....|.+++..+|+++..|..-+.-.+..+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ 154 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL 154 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc
Confidence 446778888888888999998886655566669999999999999999999988776665555544
No 416
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=57.41 E-value=28 Score=26.15 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhc
Q 008755 480 WLKAISFYTEAIKLN 494 (554)
Q Consensus 480 ~~~A~~~~~~al~~~ 494 (554)
.++|+...++|++.|
T Consensus 3 l~~Ai~lv~~Av~~D 17 (75)
T cd02684 3 LEKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777777665
No 417
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.36 E-value=1.4e+02 Score=26.60 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N--ATYYSNRAAAYLESGSFLQAEADCTKA-INLDKKNVKAYLRR 538 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~l~p~~~~~~~~~ 538 (554)
..+.+..+.+..+.|+-.+|+..|+.+-...+- - -.+...-+.++...|.|++.....+.. -..+|-...+.-.+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 445677788999999999999999997655432 1 124555667777888999888777652 23355556677779
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.+-++.|++.+|..
T Consensus 174 glAa~kagd~a~A~~ 188 (221)
T COG4649 174 GLAAYKAGDFAKAKS 188 (221)
T ss_pred hHHHHhccchHHHHH
Confidence 999999999999863
No 418
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.47 E-value=22 Score=23.50 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=23.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 008755 468 KEKGNQAYKDKQWLKAISFYTEAIK 492 (554)
Q Consensus 468 ~~~g~~~~~~g~~~~A~~~~~~al~ 492 (554)
++++..|...|+++.|...+++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 419
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.47 E-value=1.4e+02 Score=33.52 Aligned_cols=85 Identities=18% Similarity=0.052 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------ 531 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------ 531 (554)
.++..--++.+....+++++|+++.+.++..-|.+ ..++...+.+..-.|+|.+|.....++.+..-.+
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~ 536 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA 536 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence 34445556888899999999999999999987764 4578889999999999999999999998884322
Q ss_pred HHHHHHHHHHHHHcCC
Q 008755 532 VKAYLRRGTAREMLGY 547 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~ 547 (554)
..+.+..+.++..+|+
T Consensus 537 ~~~~~~~s~il~~qGq 552 (894)
T COG2909 537 LWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 2233445666777773
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.53 E-value=89 Score=31.89 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=27.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 008755 469 EKGNQAYKDKQWLKAISFYTEAIKL-NGNN-ATYYSNRAAAYLE--SGSFLQAEADCTKAIN 526 (554)
Q Consensus 469 ~~g~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~~a~~~~~--~~~~~~A~~~~~~al~ 526 (554)
.++..+++.++|..|...|+..++. .++. ...+..++.+|.. .-+|++|.+.+++.+.
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444555556666666666555553 2222 2344444444432 2245555555554443
No 421
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.40 E-value=1.3e+02 Score=32.07 Aligned_cols=82 Identities=11% Similarity=0.036 Sum_probs=58.3
Q ss_pred ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----h----------------cCCCHH---HHHHHHHHHHHc
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----L----------------NGNNAT---YYSNRAAAYLES 511 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~----------------~p~~~~---~~~~~a~~~~~~ 511 (554)
....+|-..+-+...+...-.+|+.+-|-...+++|= . .|.|-. +.+..-+.+.+.
T Consensus 276 lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~R 355 (665)
T KOG2422|consen 276 LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQR 355 (665)
T ss_pred eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3445678888899999999999999988888888771 1 122222 122222344578
Q ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHH
Q 008755 512 GSFLQAEADCTKAINLDKK-NVKAYLR 537 (554)
Q Consensus 512 ~~~~~A~~~~~~al~l~p~-~~~~~~~ 537 (554)
|.|..|.++|.-.++++|. ++-+...
T Consensus 356 GC~rTA~E~cKlllsLdp~eDPl~~l~ 382 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPSEDPLGILY 382 (665)
T ss_pred CChHHHHHHHHHHhhcCCcCCchhHHH
Confidence 8999999999999999998 6655433
No 422
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=55.28 E-value=30 Score=25.80 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
+..+...|...=..|+|++|+.+|.++++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444566677777778888888888888754
No 423
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.51 E-value=42 Score=25.33 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhc
Q 008755 480 WLKAISFYTEAIKLN 494 (554)
Q Consensus 480 ~~~A~~~~~~al~~~ 494 (554)
-..|+....+|++.|
T Consensus 3 ~~~a~~l~~~Ave~D 17 (77)
T cd02683 3 ELAAKEVLKRAVELD 17 (77)
T ss_pred hHHHHHHHHHHHHHH
Confidence 356777777777766
No 424
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=54.18 E-value=44 Score=19.81 Aligned_cols=29 Identities=28% Similarity=0.143 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755 517 AEADCTKAINLDKKNVKAYLRRGTAREML 545 (554)
Q Consensus 517 A~~~~~~al~l~p~~~~~~~~~g~~~~~~ 545 (554)
.++...+++..+|.+..++..+-.++.+.
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46788999999999999998887776553
No 425
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=52.97 E-value=30 Score=25.97 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhc
Q 008755 481 LKAISFYTEAIKLN 494 (554)
Q Consensus 481 ~~A~~~~~~al~~~ 494 (554)
.+|+..+.+|++.+
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777777665
No 426
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.27 E-value=78 Score=36.06 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
+.+..|..++.+.++.+...+|++.|-|| +++..|...-....+.|+|++-+.++..|-+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 45678999999999999999999999655 56777888888888999999999988877654
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=52.09 E-value=1.1e+02 Score=35.70 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=78.2
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 528 (554)
....++....+.+++...+..++...|+..+.+++.+ .|.-.....+++.+++.+++++.|+.+.+.|++++
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4456888999999999999999999999999998865 45556678999999999999999999999999874
Q ss_pred C--------CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 529 K--------KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 529 p--------~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
- .....+..++..+...++++.|+.
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 2 233456677888888888777653
No 428
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.51 E-value=86 Score=34.83 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
.....+...|..++++|++++|...|-+.|..
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 45678889999999999999999999988854
No 429
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.50 E-value=1.1e+02 Score=30.00 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=42.6
Q ss_pred ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
....+.+++-+.++..++..- .--..+|...+++|++..... ++..+.....+...+|. .+ .-.+..
T Consensus 208 ~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~----yr~sqq~qh~~~~~da~------~r-RDtnvl 274 (556)
T KOG3807|consen 208 YQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI----YRQSQQCQHQSPQHEAQ------LR-RDTNVL 274 (556)
T ss_pred HHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH----HhhHHHHhhhccchhhh------hh-cccchh
Confidence 334455566666665554332 234456667777776553211 12222222222211111 11 122344
Q ss_pred HHH--HHHHHHHHcCCHHHHhc
Q 008755 534 AYL--RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~--~~g~~~~~~~~~~~A~~ 553 (554)
.|. ++++|-.++|+.++|++
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHH
Confidence 443 57888888999888875
No 430
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=50.78 E-value=39 Score=19.89 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 501 YSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 501 ~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
|+.+-.+|.+.+++++|.+.+++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555666677777777777766554
No 431
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=49.34 E-value=90 Score=33.55 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=59.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008755 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 550 (554)
Q Consensus 471 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~ 550 (554)
...+.++...+++....+.-+--....+......+..+-..++.++|-++|+..+..+|+ ++++..+.-+++.|-..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 92 (578)
T PRK15490 15 CLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKD 92 (578)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhH
Confidence 344566677777777776655444445566777888888999999999999999999998 677777777777766555
Q ss_pred H
Q 008755 551 A 551 (554)
Q Consensus 551 A 551 (554)
|
T Consensus 93 ~ 93 (578)
T PRK15490 93 A 93 (578)
T ss_pred H
Confidence 5
No 432
>PF13041 PPR_2: PPR repeat family
Probab=48.74 E-value=78 Score=21.04 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
...|..+-..+.+.|++++|++.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 346777788899999999999999998865
No 433
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=48.02 E-value=35 Score=20.59 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHH
Q 008755 479 QWLKAISFYTEAIK 492 (554)
Q Consensus 479 ~~~~A~~~~~~al~ 492 (554)
++++|+..|+++.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555443
No 434
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=47.79 E-value=98 Score=32.80 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=55.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHH--HccCHHHHHHHHHHHHHh-----cCCCH
Q 008755 426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAY--KDKQWLKAISFYTEAIKL-----NGNNA 498 (554)
Q Consensus 426 ~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~g~~~~A~~~~~~al~~-----~p~~~ 498 (554)
+...+..+.+.+...+.+.-... .-+.++.++|..-- ....-..++..|.+||.. +-.+.
T Consensus 252 d~~e~~~lqq~lLw~lyd~ghl~-------------~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv 318 (618)
T PF05053_consen 252 DSVELAQLQQDLLWLLYDMGHLA-------------RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV 318 (618)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTTT-------------T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S
T ss_pred chHHHHHHHHHHHHHHHhcCchh-------------hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 44566666666666665543321 34566666666542 234455678899999865 33456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
..|..+|..|++.++|.+|+....+|-.
T Consensus 319 YPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 319 YPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999998877644
No 435
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=47.59 E-value=1.3e+02 Score=33.04 Aligned_cols=88 Identities=13% Similarity=-0.002 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHcCCHHHHHH
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------------------------NATYYSNRAAAYLESGSFLQAEA 519 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~a~~~~~~~~~~~A~~ 519 (554)
.++--|..++..+..++|.++++++++.-.+ ........+.+.+-+++|.+|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 3444455666666666666666666643111 01245667778889999999999
Q ss_pred HHHHHHHcC---CC------CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 520 DCTKAINLD---KK------NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 520 ~~~~al~l~---p~------~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++.+.. |. .+..+|-.|..+...|+.+.|+.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~ 425 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY 425 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 998877653 22 36778999999999999999874
No 436
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=47.36 E-value=52 Score=19.42 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 500 YYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
.|+.+-.++.+.|+++.|.+.+++..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355566666666666666666666544
No 437
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=47.27 E-value=58 Score=35.45 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLRRGTARE 543 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~g~~~~ 543 (554)
..|-..+.-|...|+|+-|.++|.++=. +..--..|-+.|+|++|....++... |.. ...|...+.-+.
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLD 835 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHH
Confidence 3455566677777888888888876522 22233455677778877777666443 332 223445566677
Q ss_pred HcCCHHHHhc
Q 008755 544 MLGYYKEAIE 553 (554)
Q Consensus 544 ~~~~~~~A~~ 553 (554)
..|+|.+|.+
T Consensus 836 ehgkf~eaeq 845 (1636)
T KOG3616|consen 836 EHGKFAEAEQ 845 (1636)
T ss_pred hhcchhhhhh
Confidence 7788877754
No 438
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=46.21 E-value=64 Score=33.93 Aligned_cols=63 Identities=10% Similarity=0.016 Sum_probs=53.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008755 488 TEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 488 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A 551 (554)
++-|+.+|.+.+.|+.+-.-+..+ .++++-..|++.+...|..+.+|.........-++|+.-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~V 72 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESV 72 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHH
Confidence 677999999999999997666444 999999999999999999999988777777777776643
No 439
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=45.90 E-value=1.1e+02 Score=33.04 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--CCCHHHHHH---H
Q 008755 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSN---R 504 (554)
Q Consensus 430 ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~---~ 504 (554)
+-.....+++.+....... ..+...+.-....++...+.++.+-...-++++...|+|.|.+- |+-.++|+. .
T Consensus 479 iWs~y~DleEs~gtfestk--~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTK--AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHhccHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 3334444555544333221 22223333334556777888888888888899999999988875 444555543 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 505 AAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 505 a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
....+.-.+.+.|-..+++||+..|.
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 33334445788999999999998773
No 440
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.19 E-value=48 Score=38.53 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=74.9
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-- 527 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-- 527 (554)
..+|+.+..+..++..+.+.+++++|+..-.++.-+ .|+....|.+++...+..++...|+..+.++.++
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence 346788889999999999999999999998887744 2445668899999999999999999999888876
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 528 ------DKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 ------~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.|.-.....+++..+...++++.|+.
T Consensus 1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred cccCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence 34334445677777777777776653
No 441
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.06 E-value=1.1e+02 Score=32.77 Aligned_cols=63 Identities=22% Similarity=0.174 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHH------------HHHHH-HHHHHcCCHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATY------------YSNRA-AAYLESGSFLQAEAD 520 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~------------~~~~a-~~~~~~~~~~~A~~~ 520 (554)
++...|..+|...++.+++..|.+++.++-.+. -.+.+. .+|.| .+|+..|+++++++.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHH
Confidence 456678889999999999999999998876431 111111 12222 356677777777776
Q ss_pred HHHH
Q 008755 521 CTKA 524 (554)
Q Consensus 521 ~~~a 524 (554)
+.+.
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 6543
No 442
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=44.59 E-value=52 Score=20.28 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 008755 480 WLKAISFYTEAIK 492 (554)
Q Consensus 480 ~~~A~~~~~~al~ 492 (554)
+++|+..|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4455555555443
No 443
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.44 E-value=56 Score=32.52 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAAYLESGSFLQAEAD 520 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~ 520 (554)
....-+...|+.++.+++|++|...|..|..+.. ++..+++..|..++++.+++...-.
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4466788889999999999999999999997642 2456788888898888887765543
No 444
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=44.12 E-value=47 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHHHhcC
Q 008755 479 QWLKAISFYTEAIKLNG 495 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~p 495 (554)
.+++|+....+|++.+.
T Consensus 4 ~~~~A~~li~~Av~~d~ 20 (77)
T smart00745 4 YLSKAKELISKALKADE 20 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677777778777663
No 445
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=43.91 E-value=1.2e+02 Score=25.46 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=29.6
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008755 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522 (554)
Q Consensus 475 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 522 (554)
...+.+...+..+++.+..++.+...++.+..+|.+. +-.+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3456777777777777777766666777777666544 2344444444
No 446
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.78 E-value=1.6e+02 Score=33.16 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------------------------------
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------------------------------------------------- 493 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------- 493 (554)
...-.+.|-.+...|++.+|+++|+.+|-.
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElA 1070 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELA 1070 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHH
Confidence 445566788888999999999999988821
Q ss_pred --------cCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 494 --------NGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 494 --------~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
.|.+. -+...--.+.+++++|+.|-....+.+++.|.-+.+-..+
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 11110 1122223455689999999999999999988766654433
No 447
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=43.32 E-value=2.5e+02 Score=25.31 Aligned_cols=110 Identities=14% Similarity=-0.060 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCCHHHHH
Q 008755 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK-----DKQWLKAISFYTEAIKLNGNNATYYS 502 (554)
Q Consensus 428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~ 502 (554)
+.+..+...+|...+..+.+.+.-..+.... ..+...+..|+-++- .++...|++.|..+.+. +.+.+-.
T Consensus 35 e~C~lLgdYlEgi~knF~~A~kv~K~nCden---~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~ 109 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN---SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACR 109 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccc---CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHh
Confidence 4455566666655555554444333333333 334556777776654 46899999999998764 5788888
Q ss_pred HHHHHHHHc-----C--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 503 NRAAAYLES-----G--SFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 503 ~~a~~~~~~-----~--~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
++|.++..- . +.++|..++.++..++ +..+-|++...|..
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 888887622 2 3789999999999986 56676776655543
No 448
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=42.30 E-value=1.3e+02 Score=24.31 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (554)
Q Consensus 503 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~ 547 (554)
..|...+..|||++|.+...++-+..+...-.|..-+.+-..+|+
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 455566779999999999999988866656666666776666654
No 449
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=42.24 E-value=1.6e+02 Score=29.12 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=49.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 469 EKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 469 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
|++....+.--.+.++...+...+. -..+--++..+|..+.++|+-++|-..|++++.+.++..+..|.+...
T Consensus 334 NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 334 NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3344444444455555555544332 112334677899999999999999999999999999888876665543
No 450
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=41.01 E-value=2.6e+02 Score=24.89 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NAT----YYSNRAAAYLESGSFLQAEADCTKAINLD 528 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 528 (554)
.....+.++..-...+..+++.....+++|+-.+-.. +.+ .....|..++..++|.+|.+.+-.++.-.
T Consensus 69 ~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 69 PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3466788889999999999999999999998766332 222 23445677778999999999996665443
No 451
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=2.2e+02 Score=30.10 Aligned_cols=71 Identities=14% Similarity=-0.055 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGN-NATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKN 531 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~-~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~ 531 (554)
.+..-.++-+|.++.+.|+...|..+|...++. ++. .+-++|.+|..|..++. ..++..++.+|-....++
T Consensus 446 Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 446 DDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 344556777899999999999999999988843 221 36789999999999999 999999999999877543
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.33 E-value=1.3e+02 Score=30.64 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=37.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 008755 470 KGNQAYKDKQWLKAISFYTEAIKLNG-----NNATYYSNRAAAYLESG--SFLQAEADCT 522 (554)
Q Consensus 470 ~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~a~~~~~~~--~~~~A~~~~~ 522 (554)
++..+++.++|..|...|+++++..+ .....|..++.+|..-. +|++|.+.++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 44577888888888888888887653 23456666777766444 5788888877
No 453
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.99 E-value=68 Score=33.20 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A 517 (554)
++...+++...+.+|+|.=+.+.+++++-.+|++..+....+.++.++|--.|+
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 456778899999999999999999999999999999999999999988854444
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.60 E-value=69 Score=28.71 Aligned_cols=50 Identities=6% Similarity=-0.033 Sum_probs=39.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008755 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521 (554)
Q Consensus 471 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 521 (554)
-.+.+++|+|++|.+.+++... +|+.......+..+-.+...|..-++.+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
Confidence 3467889999999999999988 8888777777777776666666666554
No 455
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=36.97 E-value=80 Score=32.49 Aligned_cols=71 Identities=6% Similarity=-0.109 Sum_probs=56.4
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
++.+|.+..-|+.+-..+--++.+++-.+.|++...--|-.+.+|...-.--+..++|......+.++|.-
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999998888877777754433344567888888888887754
No 456
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.85 E-value=81 Score=34.69 Aligned_cols=78 Identities=18% Similarity=0.101 Sum_probs=64.8
Q ss_pred cChhhHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYK--DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
.+...+..+.++.-++++ .++|.+++...+-++...|....+...++.+|..+++++-|+++.......+|.+..+--
T Consensus 86 ~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 86 DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 344555666666666654 589999999999999999999999999999999999999999999889999998855433
No 457
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=35.93 E-value=82 Score=26.17 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 498 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 498 (554)
...+|..+..+|++++|..+|-+||...|+-.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 44568889999999999999999999988643
No 458
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.75 E-value=2.2e+02 Score=27.67 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=42.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcC-C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 468 KEKGNQAYKDKQWLKAISFYTEAIKLNG-N-----NATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 468 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
+..+...-..++.++-++.+++.|+-.. + ..+++.|+|..|.+.++.+.+.+++.+.++-
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3444444444566666777766664422 2 3678999999999999999999999887764
No 459
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.19 E-value=1.7e+02 Score=29.79 Aligned_cols=64 Identities=11% Similarity=-0.016 Sum_probs=43.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
.+-+=..|...+.|+.|.....|..-- +-..+.+++.+|.+..-..+|..|.+++-+|+...|.
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 333444566677788777777665511 1123556677788888888888888888888888886
No 460
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=34.74 E-value=84 Score=23.30 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhc
Q 008755 480 WLKAISFYTEAIKLN 494 (554)
Q Consensus 480 ~~~A~~~~~~al~~~ 494 (554)
+++|+.+..+|++.|
T Consensus 3 ~~~a~~l~~~Av~~D 17 (75)
T cd02656 3 LQQAKELIKQAVKED 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356667777776665
No 461
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=34.73 E-value=1.6e+02 Score=24.73 Aligned_cols=45 Identities=9% Similarity=-0.030 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY 508 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 508 (554)
.+.+...-..++..-+.+.|...|+..++..|++..++..+-+.+
T Consensus 76 ~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 76 SEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 344555555566667778888888888888888877776665544
No 462
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=34.56 E-value=1.9e+02 Score=28.43 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=47.0
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHH--HHHHhcCC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYT--EAIKLNGN--NA-TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~--~al~~~p~--~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
.|+..+.++..+...+..|+|..|-.++- +++-.+|+ +. ..|-.+| .-..+.+|+.|++++.+.-+.
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHH
Confidence 36788999999999999999999987754 34433333 33 3444444 334567899999998775543
No 463
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=34.50 E-value=4.4e+02 Score=28.33 Aligned_cols=57 Identities=7% Similarity=-0.073 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~ 518 (554)
+.+......+..--.+|++..|...|++..+--|+...+-.........+++.+.+-
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 334444444444455566666666666666555665555555555555555555555
No 464
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=34.19 E-value=1.6e+02 Score=30.81 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=33.5
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 475 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
.+.|+.+.|.+..+ .-++...|..+|...+..|+++-|..+|+++-.
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34455555544332 234788999999999999999999999988543
No 465
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.08 E-value=74 Score=31.68 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHh
Q 008755 502 SNRAAAYLESGSFLQAEADCTKAINLDK--------KNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 502 ~~~a~~~~~~~~~~~A~~~~~~al~l~p--------~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
...|.-.+.+++|++|...|..|..+.- ++..++|.+|.++..+.+++..+
T Consensus 45 v~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 45 VQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666778999999999999888743 35678999999999998887654
No 466
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=33.28 E-value=2.5e+02 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCH
Q 008755 467 AKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNA 498 (554)
Q Consensus 467 ~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~ 498 (554)
...+|..+...| +++++..+|-+||...|+-.
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 445688888898 99999999999999988643
No 467
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.19 E-value=2.3e+02 Score=32.60 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 496 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
+.+.+|+++|.+.++.+...+|++.|-+| +++..|..--.+-.+.|+|++=+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHH
Confidence 45789999999999999999999999553 56777777777777888887643
No 468
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=31.93 E-value=1e+02 Score=28.90 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=23.5
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCC
Q 008755 500 YYSNRAAAYL---------ESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 500 ~~~~~a~~~~---------~~~~~~~A~~~~~~al~l~p~ 530 (554)
.|-..|..++ ..++..+|+.++++|+++||+
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 4555666653 345788999999999999986
No 469
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.62 E-value=1.6e+02 Score=28.46 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH--
Q 008755 468 KEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR-- 537 (554)
Q Consensus 468 ~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~-- 537 (554)
.++++-+.+.+++++|+..|.+.+.. -.+......+++..|...|+|..--+...+.-+.--++.+.-..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Q ss_pred --------------------------------------------HHHHHHHcCCHHHHhc
Q 008755 538 --------------------------------------------RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 --------------------------------------------~g~~~~~~~~~~~A~~ 553 (554)
+..++++.|+|.+|++
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysdala 146 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALA 146 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
No 470
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.89 E-value=2.9e+02 Score=34.84 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=61.0
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 528 (554)
+..-.+.|.+.+....+.|+++.|-..+-+|.+.. -+.++..+|..+.+.|+-..|+..+++.++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999998887 57889999999999999999999999999774
No 471
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.29 E-value=2.2e+02 Score=30.84 Aligned_cols=64 Identities=17% Similarity=0.065 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
+.....+..+|++..+.+.|++.|+.|=+.+|.++-.....-.....-++-++|+..+.+....
T Consensus 394 aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 394 AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 5667788889999999999999999999999998766666666666778899999988776654
No 472
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=29.76 E-value=68 Score=31.32 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 502 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 502 (554)
+.+..++..|...-+.|..-+|+..|+.|+++.|+-...|.
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 56788899999999999999999999999999988766555
No 473
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=29.33 E-value=1.1e+02 Score=25.69 Aligned_cols=35 Identities=11% Similarity=-0.057 Sum_probs=26.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 510 ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 510 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
..-+.+.|.+.|++.++++|++..++..+-..+-.
T Consensus 88 aKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 88 AKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp TTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 34467889999999999999999999888776654
No 474
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.68 E-value=1.5e+02 Score=21.13 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=19.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 491 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 491 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
++..-.+..-+.+.-.-|.++|++++|.+++++..+
T Consensus 16 lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333333333344455556677777777777766544
No 475
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=28.30 E-value=7.8e+02 Score=26.53 Aligned_cols=75 Identities=7% Similarity=-0.040 Sum_probs=44.4
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
......-.+.+...|...-..-...|+++.....|++++--.-...+.|.+.+......|+..-|-..+..+.++
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 333344455666777777777777888888888888888555455555555444444444444444444443333
No 476
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=28.11 E-value=1.2e+02 Score=27.25 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 514 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 514 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+..++..++.++..| ++..+.+++.++..+|+.++|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~ 165 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQ 165 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556677788888888 68999999999999999999964
No 477
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=27.76 E-value=39 Score=32.85 Aligned_cols=52 Identities=2% Similarity=0.067 Sum_probs=42.5
Q ss_pred ccccccccChhhHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH
Q 008755 452 KLSTNTFNQKQSAEIAKE-KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 503 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 503 (554)
...+..+.+|.+++.|.. -.-.++..++++.+...|.++|+++|+++.+|..
T Consensus 129 I~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 129 IFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 344456678899998877 4557788999999999999999999999987753
No 478
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=27.61 E-value=2.2e+02 Score=27.99 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC--CCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DK--KNVKAYLRRGTAREMLGYYKEAIEG 554 (554)
Q Consensus 482 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p--~~~~~~~~~g~~~~~~~~~~~A~~~ 554 (554)
.-+.++++--...|+..+..+..+...+..|+|..|-.++=.-..+ +| ++..+.+.+--.-..+.+|+.|++|
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~ed 189 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALED 189 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3455566656667888899999999999999999998876543333 32 3455666655555556677777654
No 479
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.95 E-value=1.8e+02 Score=30.66 Aligned_cols=82 Identities=11% Similarity=-0.019 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
.|+.+.-.++.+..+...|+-+.|+..++..++..-. ..-.++.++.++..+.+|..|...++...+++ ++..++|.
T Consensus 263 ~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS~a~Y~ 341 (546)
T KOG3783|consen 263 YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWSHAFYT 341 (546)
T ss_pred CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhhHHHHH
Confidence 3567777888888888888888888889888872111 23467889999999999999999999877765 56666554
Q ss_pred H--HHHH
Q 008755 538 R--GTAR 542 (554)
Q Consensus 538 ~--g~~~ 542 (554)
. |-||
T Consensus 342 Yfa~cc~ 348 (546)
T KOG3783|consen 342 YFAGCCL 348 (546)
T ss_pred HHHHHHH
Confidence 3 4444
No 480
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=26.94 E-value=7.4e+02 Score=25.85 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=41.6
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNR--AAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 475 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
+-+.+-..|++.|..||+.+|..+.--.+. ..+....++-.--+..|++.+..+|.....
T Consensus 323 mlNdrrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAaq 384 (615)
T KOG3540|consen 323 MLNDRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAAQ 384 (615)
T ss_pred HHhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 335566789999999999999876433332 223334445555688999999999976543
No 481
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.90 E-value=1.2e+02 Score=28.55 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHH-----hcCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHc
Q 008755 481 LKAISFYTEAIK-----LNGNNAT---YYSNRAAAY-LESGSFLQAEADCTKAINL 527 (554)
Q Consensus 481 ~~A~~~~~~al~-----~~p~~~~---~~~~~a~~~-~~~~~~~~A~~~~~~al~l 527 (554)
++|...|++|++ +.|.++. ...|.+..| .-+++.++|++..++|+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456666666664 4677754 334445444 4588999999999888754
No 482
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=26.85 E-value=3.5e+02 Score=26.22 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 483 AISFYTEAIKLNGNNATYYSNRAAAYLE----------------------SGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 483 A~~~~~~al~~~p~~~~~~~~~a~~~~~----------------------~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
-...++.=++..|+..-++..+|..+.. ..-.+.|..++.+|++++|+...++..+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 4455555567789888777777777651 122567888899999999999988887766
Q ss_pred HHHHcCC
Q 008755 541 AREMLGY 547 (554)
Q Consensus 541 ~~~~~~~ 547 (554)
+-...|+
T Consensus 142 ~s~~fge 148 (277)
T PF13226_consen 142 ISAYFGE 148 (277)
T ss_pred HHhhcCC
Confidence 6555554
No 483
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.72 E-value=5.1e+02 Score=23.57 Aligned_cols=64 Identities=6% Similarity=-0.106 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------NNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
....+...+....+.|++++|...+++|.+.-. .+++.|+ -|.|--.++.|-+|...|.-...-
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~-ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYF-AGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhhcchHHHHHHHHHHHHHHhcC
Confidence 455677778888999999999999998875422 2333333 445555677899999888765543
No 484
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=25.14 E-value=1.7e+02 Score=29.67 Aligned_cols=45 Identities=20% Similarity=0.071 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008755 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 523 (554)
..-+|+..++.++..+|.|.....-+..+|..+|-...|...|.+
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 445677777888888888888888888888888888888887754
No 485
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=24.62 E-value=1.5e+02 Score=23.50 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 491 (554)
..+++..+..+....+.|+|++|..+++++=
T Consensus 12 aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~ 42 (97)
T cd00215 12 AGNARSKALEALKAAKEGDFAEAEELLEEAN 42 (97)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567778888999999999999999998774
No 486
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=24.60 E-value=2.3e+02 Score=21.24 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=23.1
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYT 488 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 488 (554)
.-+.+..|++-|.-++..|++..|+.++.
T Consensus 31 ~~~mA~~Y~~D~~~fl~~gD~v~Ala~~s 59 (75)
T PF04010_consen 31 ILEMAESYLEDGKYFLEKGDYVNALACFS 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34678888888999999999999988864
No 487
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.31 E-value=1.8e+02 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=28.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 500 (554)
...+|..++.+|++++...++..||...|.-.+.
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 3457889999999999999999999988775543
No 488
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.69 E-value=3.7e+02 Score=29.00 Aligned_cols=76 Identities=24% Similarity=0.181 Sum_probs=51.5
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHH--------
Q 008755 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--------KKNVKAYL-------- 536 (554)
Q Consensus 473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~-------- 536 (554)
...+.|+++.|.....++ ++..=|..+|.+.++.+++..|.+++.++-.+. ..+.+.+.
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 345557777776654333 566779999999999999999999999976552 23333322
Q ss_pred ----HH-HHHHHHcCCHHHHhc
Q 008755 537 ----RR-GTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ----~~-g~~~~~~~~~~~A~~ 553 (554)
|. -.+|...|+++++++
T Consensus 721 ~g~~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 721 QGKNNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchHHHHHHHcCCHHHHHH
Confidence 23 245667777777754
No 489
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=23.18 E-value=1.6e+02 Score=23.64 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 491 (554)
..+++..+..+..+.+.|+|++|...+++|=
T Consensus 17 aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~ 47 (104)
T PRK09591 17 SGNARTEVHEAFAAMREGNFDLAEQKLNQSN 47 (104)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3677788888999999999999999998874
No 490
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=23.12 E-value=1.5e+02 Score=29.11 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
-++|+.+|++|++.. +.|..-+|+..|+.|+++.|+ .+..|+
T Consensus 16 ~kkA~~l~~~av~~E---------------q~G~l~dai~fYR~AlqI~~d-iEs~~r 57 (366)
T KOG2997|consen 16 AKKAIALYEKAVLKE---------------QDGSLYDAINFYRDALQIVPD-IESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHHh---------------hcCcHHHHHHHHHhhhcCCch-HHHHHH
Confidence 356777777777654 467778889999999998875 554444
No 491
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.11 E-value=5.7e+02 Score=24.40 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHH----------------HHHHHhcCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFY----------------TEAIKLNGNNATYYSNRAAA-YLESGSFLQAEADCTKA 524 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~----------------~~al~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~a 524 (554)
.+++.+...|..+.+.++|.+|..+| ...-+-.|...+.+..++.. |+.+++.+.|...++.-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34555555555555555555555554 12224467777777777654 45678999888877665
Q ss_pred HHc
Q 008755 525 INL 527 (554)
Q Consensus 525 l~l 527 (554)
++.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 492
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=22.56 E-value=1.7e+02 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 491 (554)
..+++..+..+....+.|+|++|..+++++=
T Consensus 14 aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~ 44 (99)
T TIGR00823 14 AGDARSKALEALKAAKAGDFAKARALVEQAG 44 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3577788888999999999999999988774
No 493
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=22.31 E-value=1.8e+02 Score=22.98 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 491 (554)
.+++..+..+....+.|+|++|...++++=
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~ 41 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEAD 41 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567778888889999999999999988774
No 494
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.10 E-value=1.5e+02 Score=33.29 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 492 (554)
++.+.|..+|...+.+|+.+-|+.+|++.-.
T Consensus 670 dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 670 DDKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 6778999999999999999999999988643
No 495
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.83 E-value=4.4e+02 Score=23.40 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=17.1
Q ss_pred HHHccCHHHHHHHHHHHHHhc
Q 008755 474 AYKDKQWLKAISFYTEAIKLN 494 (554)
Q Consensus 474 ~~~~g~~~~A~~~~~~al~~~ 494 (554)
+.+.|+|+.++..|.++-.+-
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHH
Confidence 456899999999999888664
No 496
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=21.82 E-value=7e+02 Score=23.78 Aligned_cols=89 Identities=10% Similarity=-0.091 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcC------CCC
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGSF-LQAEADCTKAINLD------KKN 531 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~l~------p~~ 531 (554)
.+.++.=+..+++.+++.-|-++..-.|+. .+.+.....++..++.....- .+-....+++++-. -.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 344444455555555555554443333322 222333334444444444321 12222223333221 134
Q ss_pred HHHHHHHHHHHHHcCCHHHHh
Q 008755 532 VKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~~A~ 552 (554)
++.+..+|..|.+.+++.+|.
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~ 110 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAE 110 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHH
Confidence 556666666666666666664
No 497
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.80 E-value=4.3e+02 Score=25.98 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=15.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIK 492 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~ 492 (554)
+...+...-+.++|++|+.+|+.+++
T Consensus 13 lv~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 13 LVKKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHhhhcchhchHHHHHHHHHHHH
Confidence 33344444455667777776666664
No 498
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=21.47 E-value=2.6e+02 Score=24.35 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hc------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK-LN------G-NNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~------p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
.......++.+++.|+.++|.+.++-+-. ++ | .......+.+..++..|+|.+|...+..++.
T Consensus 75 ~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 75 KKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34455566677777777777766654321 00 0 0123345566667777777777777766653
No 499
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=20.72 E-value=1.4e+02 Score=27.93 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHH---------HccCHHHHHHHHHHHHHhcCCC
Q 008755 462 QSAEIAKEKGNQAY---------KDKQWLKAISFYTEAIKLNGNN 497 (554)
Q Consensus 462 ~~~~~~~~~g~~~~---------~~g~~~~A~~~~~~al~~~p~~ 497 (554)
-.++.+...|..++ ..++..+|+.+|++|+++||+-
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 45667777788774 4568899999999999999874
No 500
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=20.46 E-value=3.7e+02 Score=26.43 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=40.8
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (554)
Q Consensus 475 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 525 (554)
+.++++.+.++..++.+..+|...+..+..+.++.++| |+++.+.....+
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el 159 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDEL 159 (301)
T ss_pred HhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 36778899999999999999999999999999999999 555555555444
Done!