Query 008755
Match_columns 554
No_of_seqs 373 out of 3577
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dc0_A Probable amidase; struc 100.0 7.1E-90 2.4E-94 705.7 26.6 404 12-440 2-432 (434)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 8.1E-89 2.8E-93 708.5 27.9 413 7-441 2-476 (485)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 4.1E-88 1.4E-92 699.3 27.1 413 8-441 2-469 (478)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 6.2E-88 2.1E-92 695.8 27.6 405 13-441 3-458 (471)
5 1o9p_A Malonamidase E2; malona 100.0 7E-87 2.4E-91 678.6 32.5 393 12-442 3-411 (414)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 1.7E-87 5.8E-92 700.8 26.5 417 7-441 5-474 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 1.3E-86 4.3E-91 691.2 27.4 407 7-441 6-461 (476)
8 1m22_A Peptide amidase, PAM; e 100.0 6.1E-86 2.1E-90 689.9 23.8 407 4-441 4-484 (503)
9 3a1k_A Amidase; AS family enzy 100.0 6.7E-85 2.3E-89 681.4 27.2 376 52-439 82-499 (521)
10 3ppm_A Fatty-acid amide hydrol 100.0 9E-82 3.1E-86 659.3 25.9 418 6-444 66-569 (573)
11 4gco_A Protein STI-1; structur 99.7 3.5E-16 1.2E-20 132.4 14.2 96 458-553 7-102 (126)
12 3gyz_A Chaperone protein IPGC; 99.7 1.3E-15 4.5E-20 132.9 13.8 103 451-553 23-125 (151)
13 2hr2_A Hypothetical protein; a 99.6 1.2E-14 4.2E-19 125.6 12.0 92 462-553 9-123 (159)
14 4gcn_A Protein STI-1; structur 99.6 1.8E-14 6.1E-19 122.0 12.0 93 461-553 5-104 (127)
15 3upv_A Heat shock protein STI1 99.5 6E-14 2.1E-18 118.2 13.8 93 461-553 1-93 (126)
16 4ga2_A E3 SUMO-protein ligase 99.5 2E-14 6.7E-19 125.6 10.5 96 457-552 24-119 (150)
17 2vgx_A Chaperone SYCD; alterna 99.5 7E-14 2.4E-18 121.8 12.9 97 457-553 14-110 (148)
18 2xcb_A PCRH, regulatory protei 99.5 1.2E-13 4.3E-18 119.1 14.0 100 454-553 8-107 (142)
19 3sz7_A HSC70 cochaperone (SGT) 99.5 2.8E-13 9.6E-18 119.9 14.2 96 458-553 5-100 (164)
20 3rkv_A Putative peptidylprolyl 99.5 2.1E-13 7.1E-18 120.5 11.2 93 461-553 8-118 (162)
21 1hxi_A PEX5, peroxisome target 99.4 7.9E-13 2.7E-17 110.7 11.8 90 464-553 17-106 (121)
22 4gco_A Protein STI-1; structur 99.4 8.9E-13 3E-17 111.3 11.9 93 450-542 33-125 (126)
23 3q49_B STIP1 homology and U bo 99.4 1.6E-12 5.4E-17 110.8 13.1 94 460-553 5-98 (137)
24 2l6j_A TPR repeat-containing p 99.4 8.9E-13 3E-17 107.8 10.2 91 463-553 3-99 (111)
25 2pl2_A Hypothetical conserved 99.4 1.7E-12 5.7E-17 120.8 12.3 99 455-553 30-139 (217)
26 4gyw_A UDP-N-acetylglucosamine 99.4 1.2E-12 4E-17 142.9 12.2 100 454-553 33-132 (723)
27 4gyw_A UDP-N-acetylglucosamine 99.4 2.6E-12 8.9E-17 140.2 13.8 95 459-553 4-98 (723)
28 3urz_A Uncharacterized protein 99.4 4.6E-12 1.6E-16 116.9 12.5 97 451-547 25-137 (208)
29 1p5q_A FKBP52, FK506-binding p 99.3 5.9E-12 2E-16 125.4 12.6 89 464-552 196-284 (336)
30 2h6f_A Protein farnesyltransfe 99.3 2.6E-12 8.8E-17 129.9 9.8 103 451-553 118-221 (382)
31 2pl2_A Hypothetical conserved 99.3 9.7E-12 3.3E-16 115.5 13.0 100 453-553 107-206 (217)
32 2kck_A TPR repeat; tetratricop 99.3 3.6E-12 1.2E-16 103.9 8.9 93 461-553 3-98 (112)
33 2lni_A Stress-induced-phosphop 99.3 1.3E-11 4.4E-16 104.0 12.1 95 459-553 11-105 (133)
34 1na3_A Designed protein CTPR2; 99.3 2.7E-11 9.2E-16 94.9 12.8 86 461-546 6-91 (91)
35 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 7.9E-12 2.7E-16 130.0 12.5 92 461-552 265-371 (457)
36 1elw_A TPR1-domain of HOP; HOP 99.3 3E-11 1E-15 99.2 13.4 91 463-553 3-93 (118)
37 2fbn_A 70 kDa peptidylprolyl i 99.3 1.6E-11 5.6E-16 112.1 12.6 87 465-551 89-175 (198)
38 4ga2_A E3 SUMO-protein ligase 99.3 8.4E-12 2.9E-16 108.7 10.1 96 452-547 53-149 (150)
39 2vyi_A SGTA protein; chaperone 99.3 3.8E-11 1.3E-15 100.5 13.8 88 460-547 42-129 (131)
40 2c2l_A CHIP, carboxy terminus 99.3 1.6E-11 5.6E-16 118.9 12.3 92 462-553 2-93 (281)
41 2dba_A Smooth muscle cell asso 99.3 2.4E-11 8.2E-16 104.5 12.0 93 460-552 24-119 (148)
42 3vtx_A MAMA; tetratricopeptide 99.3 4.1E-11 1.4E-15 107.8 13.8 97 457-553 66-162 (184)
43 3urz_A Uncharacterized protein 99.3 2.1E-11 7.1E-16 112.5 11.2 91 463-553 3-109 (208)
44 2xev_A YBGF; tetratricopeptide 99.3 3.2E-11 1.1E-15 101.4 11.3 88 466-553 4-97 (129)
45 2h6f_A Protein farnesyltransfe 99.3 2.5E-11 8.6E-16 122.7 12.1 98 456-553 89-187 (382)
46 1zu2_A Mitochondrial import re 99.2 4.5E-11 1.5E-15 103.0 11.5 82 459-540 31-133 (158)
47 1a17_A Serine/threonine protei 99.2 1E-10 3.5E-15 102.7 14.0 102 452-553 35-138 (166)
48 1elr_A TPR2A-domain of HOP; HO 99.2 5.3E-11 1.8E-15 99.7 11.5 92 462-553 2-100 (131)
49 3vtx_A MAMA; tetratricopeptide 99.2 7.7E-11 2.6E-15 105.9 13.3 106 448-553 23-128 (184)
50 4i17_A Hypothetical protein; T 99.2 6E-11 2E-15 110.7 12.5 92 462-553 5-97 (228)
51 2e2e_A Formate-dependent nitri 99.2 3E-11 1E-15 108.0 10.0 94 460-553 40-136 (177)
52 4i17_A Hypothetical protein; T 99.2 7.9E-11 2.7E-15 109.9 12.7 92 462-553 40-138 (228)
53 3gyz_A Chaperone protein IPGC; 99.2 7.1E-11 2.4E-15 102.7 11.1 102 428-532 37-138 (151)
54 3sz7_A HSC70 cochaperone (SGT) 99.2 5.8E-11 2E-15 104.8 10.8 95 451-545 32-126 (164)
55 3upv_A Heat shock protein STI1 99.2 1.2E-10 4.1E-15 97.7 11.8 93 453-545 27-125 (126)
56 1p5q_A FKBP52, FK506-binding p 99.2 9.6E-11 3.3E-15 116.6 13.0 97 457-553 140-251 (336)
57 2if4_A ATFKBP42; FKBP-like, al 99.2 2.2E-11 7.4E-16 121.4 7.7 97 457-553 172-285 (338)
58 1na0_A Designed protein CTPR3; 99.2 3.4E-10 1.2E-14 93.7 13.5 85 460-544 39-123 (125)
59 1ihg_A Cyclophilin 40; ppiase 99.2 5.5E-11 1.9E-15 119.9 10.0 95 459-553 268-362 (370)
60 1hh8_A P67PHOX, NCF-2, neutrop 99.2 3.2E-10 1.1E-14 104.3 14.5 91 463-553 36-142 (213)
61 2xcb_A PCRH, regulatory protei 99.2 8.4E-11 2.9E-15 101.1 9.6 98 452-549 40-137 (142)
62 2vgx_A Chaperone SYCD; alterna 99.2 7.8E-11 2.7E-15 102.3 9.2 91 452-542 43-133 (148)
63 2lni_A Stress-induced-phosphop 99.2 1.6E-10 5.5E-15 97.2 10.9 91 457-547 43-133 (133)
64 3rkv_A Putative peptidylprolyl 99.2 9.8E-11 3.3E-15 103.1 9.9 91 460-550 59-150 (162)
65 2pzi_A Probable serine/threoni 99.2 4.4E-11 1.5E-15 130.7 9.4 101 452-553 455-555 (681)
66 2vyi_A SGTA protein; chaperone 99.2 2.9E-10 9.8E-15 95.0 12.4 96 458-553 6-101 (131)
67 1a17_A Serine/threonine protei 99.2 2.7E-10 9.3E-15 99.9 12.6 93 461-553 10-102 (166)
68 3k9i_A BH0479 protein; putativ 99.2 2.4E-11 8.3E-16 100.7 5.3 91 460-550 23-113 (117)
69 3k9i_A BH0479 protein; putativ 99.2 2.3E-10 7.9E-15 94.7 11.2 78 476-553 2-82 (117)
70 1zu2_A Mitochondrial import re 99.1 5.3E-11 1.8E-15 102.6 6.7 79 475-553 13-112 (158)
71 3ma5_A Tetratricopeptide repea 99.1 2.2E-10 7.4E-15 92.1 10.0 88 460-547 3-92 (100)
72 3uq3_A Heat shock protein STI1 99.1 1.4E-09 4.8E-14 102.6 17.4 95 459-553 134-228 (258)
73 3as5_A MAMA; tetratricopeptide 99.1 1.2E-09 4.2E-14 97.2 15.7 93 460-552 38-130 (186)
74 1xnf_A Lipoprotein NLPI; TPR, 99.1 8.6E-10 2.9E-14 105.4 15.5 94 460-553 39-132 (275)
75 1ihg_A Cyclophilin 40; ppiase 99.1 4.4E-10 1.5E-14 113.2 12.5 89 465-553 224-328 (370)
76 2fo7_A Synthetic consensus TPR 99.1 8.7E-10 3E-14 92.4 12.4 94 460-553 31-124 (136)
77 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 2.2E-10 7.5E-15 119.0 10.4 89 464-552 317-405 (457)
78 2vsy_A XCC0866; transferase, g 99.1 4E-10 1.4E-14 120.6 12.7 123 428-553 24-149 (568)
79 2fbn_A 70 kDa peptidylprolyl i 99.1 4.5E-10 1.5E-14 102.4 11.3 101 453-553 27-143 (198)
80 2hr2_A Hypothetical protein; a 99.1 3.7E-10 1.3E-14 97.5 9.9 79 461-539 54-143 (159)
81 1hxi_A PEX5, peroxisome target 99.1 1.8E-10 6.2E-15 96.2 7.4 81 453-533 40-120 (121)
82 1wao_1 Serine/threonine protei 99.1 1.2E-10 3.9E-15 121.7 6.9 104 450-553 26-131 (477)
83 3as5_A MAMA; tetratricopeptide 99.1 1.5E-09 5E-14 96.7 12.9 94 460-553 72-165 (186)
84 1na0_A Designed protein CTPR3; 99.1 1.7E-09 5.9E-14 89.3 12.5 91 463-553 8-98 (125)
85 2q7f_A YRRB protein; TPR, prot 99.1 1.2E-09 3.9E-14 102.4 12.6 97 457-553 84-180 (243)
86 4eqf_A PEX5-related protein; a 99.1 1.7E-09 5.9E-14 108.3 14.7 91 463-553 212-302 (365)
87 2vq2_A PILW, putative fimbrial 99.0 1.9E-09 6.4E-14 99.4 13.4 102 452-553 30-134 (225)
88 2pzi_A Probable serine/threoni 99.0 2.3E-10 7.9E-15 125.0 8.3 95 458-553 427-521 (681)
89 2vsy_A XCC0866; transferase, g 99.0 1.5E-09 5.2E-14 116.0 14.6 100 454-553 13-112 (568)
90 3qky_A Outer membrane assembly 99.0 1.6E-09 5.4E-14 103.3 13.0 125 426-553 14-169 (261)
91 3qky_A Outer membrane assembly 99.0 8.9E-10 3E-14 105.1 10.8 95 459-553 10-118 (261)
92 4eqf_A PEX5-related protein; a 99.0 1.2E-09 4.1E-14 109.4 12.3 93 461-553 62-154 (365)
93 4abn_A Tetratricopeptide repea 99.0 5.4E-10 1.8E-14 116.7 9.7 95 459-553 208-313 (474)
94 1elw_A TPR1-domain of HOP; HOP 99.0 3.2E-09 1.1E-13 86.8 12.3 85 458-542 32-116 (118)
95 2kc7_A BFR218_protein; tetratr 99.0 2.5E-09 8.4E-14 85.3 11.2 80 467-546 3-85 (99)
96 1fch_A Peroxisomal targeting s 99.0 2E-09 6.8E-14 107.7 13.0 91 463-553 216-306 (368)
97 2fo7_A Synthetic consensus TPR 99.0 3.6E-09 1.2E-13 88.5 12.6 89 465-553 2-90 (136)
98 1wao_1 Serine/threonine protei 99.0 9.5E-10 3.3E-14 114.8 10.9 93 461-553 3-95 (477)
99 3q49_B STIP1 homology and U bo 99.0 8.9E-10 3.1E-14 93.4 8.8 95 456-550 35-134 (137)
100 2kat_A Uncharacterized protein 99.0 1.1E-09 3.8E-14 90.1 9.0 91 459-549 14-106 (115)
101 4abn_A Tetratricopeptide repea 99.0 9E-10 3.1E-14 115.0 10.5 94 459-553 166-279 (474)
102 2y4t_A DNAJ homolog subfamily 99.0 3.2E-09 1.1E-13 109.4 13.8 99 455-553 17-115 (450)
103 2q7f_A YRRB protein; TPR, prot 99.0 3.2E-09 1.1E-13 99.3 12.4 101 453-553 114-214 (243)
104 2ho1_A Type 4 fimbrial biogene 99.0 3.6E-09 1.2E-13 99.8 12.5 105 449-553 56-162 (252)
105 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.3E-09 1.1E-13 97.4 11.9 89 462-553 4-92 (213)
106 1w3b_A UDP-N-acetylglucosamine 99.0 2.1E-09 7.2E-14 108.7 11.3 96 458-553 61-156 (388)
107 3ieg_A DNAJ homolog subfamily 99.0 4.4E-09 1.5E-13 104.3 13.4 91 463-553 2-92 (359)
108 2xev_A YBGF; tetratricopeptide 99.0 1E-08 3.5E-13 85.7 13.7 85 463-547 38-125 (129)
109 3fp2_A TPR repeat-containing p 99.0 1.6E-09 5.3E-14 114.5 10.5 94 460-553 21-114 (537)
110 2dba_A Smooth muscle cell asso 99.0 6.8E-09 2.3E-13 88.9 12.5 80 464-543 65-144 (148)
111 2ho1_A Type 4 fimbrial biogene 99.0 1.4E-08 4.8E-13 95.7 15.8 95 459-553 136-230 (252)
112 2kat_A Uncharacterized protein 98.9 2.9E-09 1E-13 87.6 9.5 73 481-553 2-74 (115)
113 2vq2_A PILW, putative fimbrial 98.9 6.1E-09 2.1E-13 95.9 12.7 101 453-553 65-168 (225)
114 1w3b_A UDP-N-acetylglucosamine 98.9 3.1E-09 1E-13 107.5 11.5 96 458-553 27-122 (388)
115 3cv0_A Peroxisome targeting si 98.9 5.6E-09 1.9E-13 102.3 12.8 93 461-553 169-261 (327)
116 3u4t_A TPR repeat-containing p 98.9 1.3E-09 4.3E-14 104.2 7.8 90 462-552 35-128 (272)
117 2gw1_A Mitochondrial precursor 98.9 5.7E-09 2E-13 109.3 13.4 92 461-553 3-94 (514)
118 2r5s_A Uncharacterized protein 98.9 2.4E-09 8.4E-14 95.5 8.5 71 483-553 93-165 (176)
119 2yhc_A BAMD, UPF0169 lipoprote 98.9 5.7E-09 1.9E-13 97.2 11.3 93 461-553 38-168 (225)
120 3uq3_A Heat shock protein STI1 98.9 6.5E-09 2.2E-13 98.0 11.5 92 461-553 2-100 (258)
121 1fch_A Peroxisomal targeting s 98.9 4.1E-09 1.4E-13 105.3 10.7 97 457-553 244-351 (368)
122 3mkr_A Coatomer subunit epsilo 98.9 5.8E-09 2E-13 101.4 11.4 80 472-551 174-253 (291)
123 3u4t_A TPR repeat-containing p 98.9 7.4E-09 2.5E-13 98.8 11.9 90 464-553 74-163 (272)
124 4gcn_A Protein STI-1; structur 98.9 8.3E-09 2.9E-13 86.7 10.6 84 452-536 30-120 (127)
125 3hym_B Cell division cycle pro 98.9 9.1E-09 3.1E-13 100.8 12.5 97 457-553 118-214 (330)
126 3cv0_A Peroxisome targeting si 98.9 8.3E-09 2.8E-13 101.0 11.8 96 458-553 200-307 (327)
127 3hym_B Cell division cycle pro 98.9 7.3E-09 2.5E-13 101.6 11.4 95 459-553 85-180 (330)
128 3qou_A Protein YBBN; thioredox 98.9 2.4E-09 8.1E-14 103.9 7.5 100 453-552 140-275 (287)
129 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.4E-08 4.7E-13 94.6 12.1 91 463-553 77-205 (225)
130 3qou_A Protein YBBN; thioredox 98.8 1.4E-08 4.7E-13 98.5 11.4 76 451-526 206-283 (287)
131 2r5s_A Uncharacterized protein 98.8 1.7E-08 5.7E-13 90.0 10.6 121 429-553 8-129 (176)
132 1xnf_A Lipoprotein NLPI; TPR, 98.8 2.6E-08 8.9E-13 94.9 12.3 96 457-553 70-165 (275)
133 1elr_A TPR2A-domain of HOP; HO 98.8 1.6E-08 5.4E-13 84.3 9.4 88 459-547 33-127 (131)
134 3ieg_A DNAJ homolog subfamily 98.8 5.1E-08 1.8E-12 96.5 14.7 92 462-553 106-209 (359)
135 3edt_B KLC 2, kinesin light ch 98.8 1.4E-08 4.6E-13 97.0 9.8 94 460-553 81-190 (283)
136 1qqe_A Vesicular transport pro 98.8 1.7E-08 5.7E-13 98.1 10.2 92 462-553 75-179 (292)
137 2v5f_A Prolyl 4-hydroxylase su 98.8 5.7E-08 1.9E-12 78.4 11.7 79 463-541 4-89 (104)
138 2if4_A ATFKBP42; FKBP-like, al 98.8 3.8E-09 1.3E-13 105.1 5.5 81 465-545 231-311 (338)
139 1qqe_A Vesicular transport pro 98.8 2.7E-08 9.3E-13 96.6 11.3 92 462-553 115-220 (292)
140 3mkr_A Coatomer subunit epsilo 98.8 7.4E-08 2.5E-12 93.5 14.2 93 461-553 127-221 (291)
141 3fp2_A TPR repeat-containing p 98.7 2.5E-08 8.5E-13 105.2 10.9 95 459-553 305-399 (537)
142 2y4t_A DNAJ homolog subfamily 98.7 5.1E-08 1.7E-12 100.3 12.9 98 456-553 52-164 (450)
143 3ma5_A Tetratricopeptide repea 98.7 2.5E-08 8.5E-13 79.8 8.2 61 493-553 2-62 (100)
144 3bee_A Putative YFRE protein; 98.7 4.2E-08 1.4E-12 77.2 8.9 72 460-531 2-76 (93)
145 3dra_A Protein farnesyltransfe 98.7 4.3E-08 1.5E-12 95.3 10.6 102 452-553 55-167 (306)
146 3edt_B KLC 2, kinesin light ch 98.7 3E-08 1E-12 94.5 9.0 94 460-553 39-148 (283)
147 2ond_A Cleavage stimulation fa 98.7 3E-08 1E-12 97.0 8.9 72 481-552 81-154 (308)
148 1dce_A Protein (RAB geranylger 98.7 6.6E-08 2.3E-12 102.7 12.1 103 451-553 50-165 (567)
149 1ouv_A Conserved hypothetical 98.7 1.3E-07 4.5E-12 90.4 13.2 120 425-553 4-135 (273)
150 2xpi_A Anaphase-promoting comp 98.7 8.2E-08 2.8E-12 102.8 12.5 95 459-553 402-496 (597)
151 2xpi_A Anaphase-promoting comp 98.7 9.6E-08 3.3E-12 102.2 12.7 95 459-553 368-462 (597)
152 2e2e_A Formate-dependent nitri 98.7 1.7E-08 5.8E-13 89.8 5.6 83 471-553 17-102 (177)
153 4f3v_A ESX-1 secretion system 98.7 9.1E-08 3.1E-12 91.0 10.8 123 427-553 102-229 (282)
154 3u3w_A Transcriptional activat 98.6 1.2E-07 4E-12 92.1 11.2 92 462-553 153-258 (293)
155 2qfc_A PLCR protein; TPR, HTH, 98.6 2.4E-07 8.2E-12 89.8 13.2 90 462-551 153-255 (293)
156 1ouv_A Conserved hypothetical 98.6 3.4E-07 1.2E-11 87.4 14.1 88 462-553 72-171 (273)
157 3ro3_A PINS homolog, G-protein 98.6 7.5E-08 2.6E-12 83.2 8.6 90 464-553 49-150 (164)
158 2kck_A TPR repeat; tetratricop 98.6 1.8E-07 6.3E-12 75.3 10.3 72 460-531 36-110 (112)
159 2c2l_A CHIP, carboxy terminus 98.6 1.5E-08 5.2E-13 97.9 4.3 77 455-531 29-105 (281)
160 4a1s_A PINS, partner of inscut 98.6 1.7E-07 5.9E-12 95.1 11.2 93 461-553 45-147 (411)
161 2ond_A Cleavage stimulation fa 98.6 1.8E-07 6.1E-12 91.5 10.9 93 460-552 129-223 (308)
162 3nf1_A KLC 1, kinesin light ch 98.6 1.2E-07 4.2E-12 91.8 9.7 99 455-553 18-132 (311)
163 3gw4_A Uncharacterized protein 98.6 1.2E-07 4.1E-12 85.8 8.9 92 462-553 24-128 (203)
164 2gw1_A Mitochondrial precursor 98.6 7.8E-08 2.7E-12 100.6 8.2 97 457-553 297-393 (514)
165 3nf1_A KLC 1, kinesin light ch 98.6 1.4E-07 4.7E-12 91.4 9.4 94 460-553 107-216 (311)
166 3ulq_A Response regulator aspa 98.6 1.9E-07 6.5E-12 94.2 10.5 93 461-553 181-285 (383)
167 3q7a_A Farnesyltransferase alp 98.6 2.2E-07 7.4E-12 91.4 10.3 99 451-549 75-176 (349)
168 3ro3_A PINS homolog, G-protein 98.5 3.1E-07 1.1E-11 79.2 10.0 93 461-553 6-110 (164)
169 2qfc_A PLCR protein; TPR, HTH, 98.5 7.1E-07 2.4E-11 86.5 13.4 92 462-553 113-217 (293)
170 1pc2_A Mitochondria fission pr 98.5 2.4E-07 8.1E-12 78.8 8.5 82 462-543 30-116 (152)
171 1dce_A Protein (RAB geranylger 98.5 5.1E-07 1.7E-11 95.9 12.9 88 458-545 101-191 (567)
172 2ifu_A Gamma-SNAP; membrane fu 98.5 2.2E-07 7.7E-12 90.8 9.3 90 463-553 115-216 (307)
173 2ifu_A Gamma-SNAP; membrane fu 98.5 2.2E-07 7.6E-12 90.8 8.9 91 462-553 74-176 (307)
174 3ulq_A Response regulator aspa 98.5 2E-07 7E-12 94.0 8.8 94 460-553 139-245 (383)
175 3ro2_A PINS homolog, G-protein 98.5 5.3E-07 1.8E-11 87.9 11.3 91 463-553 4-104 (338)
176 3u3w_A Transcriptional activat 98.5 2.3E-07 7.8E-12 90.0 8.6 89 465-553 116-217 (293)
177 3dss_A Geranylgeranyl transfer 98.5 9.2E-07 3.2E-11 86.5 12.4 100 454-553 54-166 (331)
178 3dra_A Protein farnesyltransfe 98.5 4.6E-07 1.6E-11 88.0 9.9 101 451-551 131-239 (306)
179 4g1t_A Interferon-induced prot 98.5 3.5E-07 1.2E-11 94.7 9.6 97 457-553 240-355 (472)
180 3q15_A PSP28, response regulat 98.4 4.7E-07 1.6E-11 91.2 9.9 92 462-553 180-282 (378)
181 3dss_A Geranylgeranyl transfer 98.4 8.6E-07 3E-11 86.7 11.3 88 458-545 102-192 (331)
182 3sf4_A G-protein-signaling mod 98.4 6E-07 2.1E-11 90.5 10.5 92 462-553 7-108 (406)
183 4a1s_A PINS, partner of inscut 98.4 2E-07 7E-12 94.6 6.8 84 464-547 86-181 (411)
184 4g1t_A Interferon-induced prot 98.4 9.5E-07 3.2E-11 91.5 12.0 86 460-545 90-185 (472)
185 3gw4_A Uncharacterized protein 98.4 4.7E-07 1.6E-11 81.9 8.2 94 460-553 62-168 (203)
186 3rjv_A Putative SEL1 repeat pr 98.4 7.5E-07 2.6E-11 81.9 9.2 91 462-553 83-189 (212)
187 3sf4_A G-protein-signaling mod 98.4 1E-06 3.4E-11 88.8 11.0 93 461-553 184-288 (406)
188 3rjv_A Putative SEL1 repeat pr 98.3 1.1E-06 3.8E-11 80.7 9.0 121 425-553 16-150 (212)
189 3q15_A PSP28, response regulat 98.3 2.3E-06 8E-11 86.0 10.2 94 460-553 137-243 (378)
190 3n71_A Histone lysine methyltr 98.3 1.8E-06 6.1E-11 89.6 9.4 90 464-553 309-414 (490)
191 3ro2_A PINS homolog, G-protein 98.3 8.1E-07 2.8E-11 86.6 6.4 85 463-547 42-138 (338)
192 3q7a_A Farnesyltransferase alp 98.3 7.6E-06 2.6E-10 80.4 13.0 90 464-553 54-146 (349)
193 3n71_A Histone lysine methyltr 98.3 3.2E-06 1.1E-10 87.7 10.7 96 457-552 344-455 (490)
194 2l6j_A TPR repeat-containing p 98.2 2E-06 6.9E-11 69.2 7.4 57 497-553 3-59 (111)
195 1klx_A Cysteine rich protein B 98.2 1.8E-05 6.2E-10 67.1 13.7 80 470-553 31-118 (138)
196 1na3_A Designed protein CTPR2; 98.2 3.1E-06 1.1E-10 65.4 7.4 58 496-553 7-64 (91)
197 3qww_A SET and MYND domain-con 98.2 2.8E-06 9.5E-11 86.7 8.8 84 470-553 304-403 (433)
198 3bee_A Putative YFRE protein; 98.2 5.7E-06 1.9E-10 64.8 8.5 60 494-553 2-64 (93)
199 2ooe_A Cleavage stimulation fa 98.2 2.8E-06 9.5E-11 89.7 8.5 93 460-552 317-411 (530)
200 4f3v_A ESX-1 secretion system 98.1 1.7E-06 5.7E-11 82.3 5.3 91 462-553 100-192 (282)
201 1hz4_A MALT regulatory protein 98.1 1.3E-05 4.4E-10 80.1 11.4 91 463-553 92-195 (373)
202 2kc7_A BFR218_protein; tetratr 98.1 1.4E-06 4.6E-11 69.0 2.7 68 457-532 27-95 (99)
203 3qwp_A SET and MYND domain-con 98.1 8.7E-06 3E-10 83.1 8.9 90 464-553 287-392 (429)
204 3ly7_A Transcriptional activat 98.0 3.2E-05 1.1E-09 75.9 12.2 90 463-553 195-331 (372)
205 2ooe_A Cleavage stimulation fa 98.0 1.9E-05 6.3E-10 83.3 11.5 88 465-552 357-445 (530)
206 1hz4_A MALT regulatory protein 98.0 1.2E-05 4.1E-10 80.4 8.5 91 463-553 52-156 (373)
207 3u64_A Protein TP_0956; tetrat 98.0 3.2E-05 1.1E-09 72.8 9.9 68 463-530 198-272 (301)
208 1nzn_A CGI-135 protein, fissio 97.9 4.1E-05 1.4E-09 62.6 9.1 81 462-542 33-118 (126)
209 3e4b_A ALGK; tetratricopeptide 97.9 3.3E-05 1.1E-09 79.7 9.7 86 461-552 245-342 (452)
210 2xm6_A Protein corresponding t 97.9 9E-05 3.1E-09 77.2 13.1 88 462-553 73-172 (490)
211 3qwp_A SET and MYND domain-con 97.9 5.7E-05 1.9E-09 77.1 10.8 89 457-545 322-426 (429)
212 3qww_A SET and MYND domain-con 97.9 5.1E-05 1.7E-09 77.4 10.4 78 457-534 333-423 (433)
213 2xm6_A Protein corresponding t 97.8 8.7E-05 3E-09 77.3 12.3 88 462-553 326-424 (490)
214 1klx_A Cysteine rich protein B 97.8 9.5E-05 3.2E-09 62.5 10.3 74 462-539 55-136 (138)
215 1pc2_A Mitochondria fission pr 97.8 4.9E-05 1.7E-09 64.6 7.8 75 479-553 13-92 (152)
216 3e4b_A ALGK; tetratricopeptide 97.8 3.2E-05 1.1E-09 79.9 7.9 91 456-552 205-307 (452)
217 3ly7_A Transcriptional activat 97.8 5.1E-05 1.7E-09 74.4 8.7 76 460-536 273-348 (372)
218 3ffl_A Anaphase-promoting comp 97.7 0.00025 8.6E-09 60.6 9.7 90 464-553 20-143 (167)
219 1xi4_A Clathrin heavy chain; a 97.5 0.00046 1.6E-08 78.2 12.6 65 461-530 1102-1166(1630)
220 3mv2_B Coatomer subunit epsilo 97.5 0.0004 1.4E-08 66.8 10.3 90 463-552 99-198 (310)
221 1y8m_A FIS1; mitochondria, unk 97.5 0.0013 4.5E-08 54.5 11.5 80 463-542 38-121 (144)
222 3o48_A Mitochondria fission 1 97.5 0.0012 4.2E-08 54.0 10.9 82 463-544 39-124 (134)
223 1xi4_A Clathrin heavy chain; a 97.4 0.0011 3.7E-08 75.3 13.1 85 461-553 1131-1242(1630)
224 3u64_A Protein TP_0956; tetrat 97.4 0.00024 8.3E-09 66.8 6.7 72 482-553 181-261 (301)
225 1b89_A Protein (clathrin heavy 97.2 0.00029 1E-08 70.9 6.0 78 466-552 150-227 (449)
226 3mv2_B Coatomer subunit epsilo 97.2 0.0014 4.8E-08 63.0 10.3 90 461-553 133-232 (310)
227 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0011 3.8E-08 52.7 7.8 56 498-553 5-67 (104)
228 4b4t_Q 26S proteasome regulato 97.1 0.00088 3E-08 68.0 8.4 92 462-553 133-237 (434)
229 4b4t_Q 26S proteasome regulato 97.1 0.0015 5E-08 66.3 9.7 91 463-553 94-196 (434)
230 3ffl_A Anaphase-promoting comp 96.7 0.012 4.1E-07 50.2 10.4 81 461-542 60-165 (167)
231 1b89_A Protein (clathrin heavy 96.7 0.006 2.1E-07 61.5 9.6 79 462-544 175-253 (449)
232 1nzn_A CGI-135 protein, fissio 96.3 0.012 4E-07 48.1 7.3 76 478-553 15-95 (126)
233 4e6h_A MRNA 3'-END-processing 95.5 0.024 8.3E-07 61.0 8.1 98 455-552 334-454 (679)
234 4h7y_A Dual specificity protei 95.0 0.097 3.3E-06 43.7 8.2 125 420-546 6-141 (161)
235 3kae_A CDC27, possible protein 95.0 0.27 9.1E-06 41.8 10.8 87 462-553 31-135 (242)
236 1ya0_A SMG-7 transcript varian 94.8 0.15 5.1E-06 52.4 11.1 81 465-545 153-233 (497)
237 4gns_B Protein CSD3, chitin bi 94.8 0.074 2.5E-06 57.4 9.0 63 462-524 335-397 (754)
238 4h7y_A Dual specificity protei 94.6 0.46 1.6E-05 39.7 11.3 50 462-512 92-141 (161)
239 4e6h_A MRNA 3'-END-processing 94.6 0.18 6.1E-06 54.2 11.5 74 480-553 325-399 (679)
240 2ff4_A Probable regulatory pro 94.4 0.21 7.2E-06 49.8 10.9 60 467-526 174-233 (388)
241 1zbp_A Hypothetical protein VP 94.3 0.18 6.2E-06 46.7 9.2 63 472-534 5-67 (273)
242 4g26_A Pentatricopeptide repea 93.4 0.83 2.8E-05 47.2 13.4 90 463-553 104-196 (501)
243 4gns_B Protein CSD3, chitin bi 93.2 0.19 6.6E-06 54.2 8.4 52 501-552 340-391 (754)
244 1y8m_A FIS1; mitochondria, unk 92.1 0.4 1.4E-05 39.7 6.9 44 462-505 75-118 (144)
245 3o48_A Mitochondria fission 1 92.1 0.44 1.5E-05 38.9 7.1 46 462-507 76-121 (134)
246 2ff4_A Probable regulatory pro 91.9 0.54 1.9E-05 46.8 9.3 51 502-552 175-225 (388)
247 2uy1_A Cleavage stimulation fa 90.9 1.4 4.9E-05 45.3 11.6 89 463-552 285-374 (493)
248 3mkq_A Coatomer beta'-subunit; 86.8 5.1 0.00018 43.5 13.1 90 462-551 679-802 (814)
249 3txn_A 26S proteasome regulato 86.8 2.2 7.4E-05 42.3 8.9 87 467-553 102-202 (394)
250 4fhn_B Nucleoporin NUP120; pro 86.7 1.1 3.9E-05 51.3 7.9 90 463-552 841-958 (1139)
251 2uy1_A Cleavage stimulation fa 86.2 2.1 7.2E-05 44.0 8.9 59 480-539 195-253 (493)
252 1zbp_A Hypothetical protein VP 85.9 2 6.9E-05 39.7 7.5 48 451-498 18-65 (273)
253 4b4t_R RPN7, 26S proteasome re 83.5 2.4 8.1E-05 42.7 7.7 89 464-552 131-228 (429)
254 3kae_A CDC27, possible protein 83.4 5.8 0.0002 33.8 8.5 70 463-532 61-148 (242)
255 3mkq_B Coatomer subunit alpha; 83.0 11 0.00037 32.5 10.5 30 462-491 32-61 (177)
256 4g26_A Pentatricopeptide repea 82.5 12 0.0004 38.4 12.6 75 478-553 84-161 (501)
257 1ya0_A SMG-7 transcript varian 81.7 2.8 9.5E-05 42.9 7.4 53 500-552 154-206 (497)
258 3mkq_A Coatomer beta'-subunit; 80.7 4.9 0.00017 43.7 9.6 47 473-524 661-707 (814)
259 3mkq_B Coatomer subunit alpha; 80.4 18 0.00062 31.1 10.9 54 463-524 7-60 (177)
260 3spa_A Mtrpol, DNA-directed RN 79.7 20 0.00068 40.0 13.4 90 462-552 125-221 (1134)
261 2w2u_A Hypothetical P60 katani 74.4 4.4 0.00015 30.1 4.7 32 462-493 17-48 (83)
262 2v6y_A AAA family ATPase, P60 74.3 4.4 0.00015 30.1 4.7 31 463-493 10-40 (83)
263 4b4t_P 26S proteasome regulato 74.3 35 0.0012 34.2 13.0 91 462-552 135-238 (445)
264 2w2u_A Hypothetical P60 katani 73.9 16 0.00054 27.0 7.6 15 480-494 16-30 (83)
265 2v6y_A AAA family ATPase, P60 71.5 20 0.00067 26.5 7.7 14 481-494 9-22 (83)
266 4b4t_S RPN3, 26S proteasome re 69.6 6.7 0.00023 40.0 6.2 68 462-531 229-303 (523)
267 3t5x_A PCI domain-containing p 68.1 12 0.00041 33.1 7.0 39 461-499 11-49 (203)
268 4gq2_M Nucleoporin NUP120; bet 67.5 11 0.00038 42.1 8.1 80 465-544 841-948 (950)
269 1wy6_A Hypothetical protein ST 66.8 25 0.00085 28.8 7.7 53 475-527 102-154 (172)
270 2ijq_A Hypothetical protein; s 65.8 36 0.0012 28.7 9.0 63 465-527 33-104 (161)
271 2crb_A Nuclear receptor bindin 64.4 13 0.00043 27.9 5.1 31 462-492 13-43 (97)
272 4a5x_A MITD1, MIT domain-conta 64.2 9.9 0.00034 28.3 4.7 32 462-493 14-45 (86)
273 3ax2_A Mitochondrial import re 63.8 18 0.00061 26.0 5.7 34 467-500 20-53 (73)
274 1wfd_A Hypothetical protein 15 63.3 9.9 0.00034 28.8 4.7 32 462-493 13-44 (93)
275 2cpt_A SKD1 protein, vacuolar 62.2 9.2 0.00031 30.4 4.5 32 462-493 16-47 (117)
276 2cfu_A SDSA1; SDS-hydrolase, l 60.2 14 0.00048 39.3 6.8 50 464-513 449-498 (658)
277 1wfd_A Hypothetical protein 15 59.8 15 0.0005 27.8 5.1 14 481-494 13-26 (93)
278 2v6x_A Vacuolar protein sortin 59.5 15 0.00052 27.1 5.1 32 462-493 11-42 (85)
279 2v6x_A Vacuolar protein sortin 58.6 14 0.00047 27.4 4.7 32 480-526 10-41 (85)
280 4a5x_A MITD1, MIT domain-conta 57.9 13 0.00043 27.8 4.3 33 480-527 13-45 (86)
281 2cpt_A SKD1 protein, vacuolar 57.4 15 0.0005 29.2 4.9 13 482-494 43-55 (117)
282 2dl1_A Spartin; SPG20, MIT, st 57.4 9.4 0.00032 30.1 3.6 16 479-494 18-33 (116)
283 3mv2_A Coatomer subunit alpha; 55.6 44 0.0015 31.6 8.6 27 508-534 217-243 (325)
284 3re2_A Predicted protein; meni 55.2 68 0.0023 30.8 9.5 89 426-527 230-325 (472)
285 1qsa_A Protein (soluble lytic 54.5 40 0.0014 35.4 9.1 43 509-551 296-338 (618)
286 2vkj_A TM1634; membrane protei 52.4 34 0.0012 25.3 5.5 34 462-495 51-84 (106)
287 4b4t_P 26S proteasome regulato 51.6 1E+02 0.0035 30.7 11.4 67 461-527 174-247 (445)
288 3t5x_A PCI domain-containing p 51.2 31 0.0011 30.4 6.5 36 498-533 14-49 (203)
289 3txn_A 26S proteasome regulato 50.7 65 0.0022 31.6 9.4 68 460-527 135-210 (394)
290 2crb_A Nuclear receptor bindin 50.1 22 0.00076 26.6 4.3 28 499-526 16-43 (97)
291 3u84_A Menin; MLL, JUND, ledgf 47.8 98 0.0034 30.3 9.5 91 424-527 250-347 (550)
292 4b4t_S RPN3, 26S proteasome re 46.6 25 0.00086 35.8 5.7 89 463-553 180-291 (523)
293 1om2_A Protein (mitochondrial 45.4 30 0.001 26.2 4.5 31 467-497 23-53 (95)
294 4gq4_A Menin; tumor suppressor 44.0 1.3E+02 0.0044 29.5 9.8 114 398-527 208-332 (489)
295 3t5v_B Nuclear mRNA export pro 40.1 59 0.002 32.6 7.3 61 471-531 183-254 (455)
296 2rpa_A Katanin P60 ATPase-cont 40.0 35 0.0012 24.7 4.1 30 464-493 12-41 (78)
297 2cfu_A SDSA1; SDS-hydrolase, l 40.0 47 0.0016 35.2 6.9 50 499-548 450-499 (658)
298 3lpz_A GET4 (YOR164C homolog); 39.6 2.6E+02 0.0087 26.6 13.6 24 530-553 134-157 (336)
299 2cwy_A Hypothetical protein TT 39.2 85 0.0029 23.6 6.4 58 468-527 5-68 (94)
300 2pmr_A Uncharacterized protein 36.9 80 0.0027 23.4 5.7 29 460-488 35-63 (87)
301 3mkr_B Coatomer subunit alpha; 36.0 96 0.0033 29.3 7.5 23 508-530 208-230 (320)
302 4fhn_B Nucleoporin NUP120; pro 33.0 93 0.0032 35.4 8.4 79 470-552 818-919 (1139)
303 3eab_A Spastin; spastin, MIT, 32.5 32 0.0011 25.7 2.9 18 478-495 11-28 (89)
304 4b4t_R RPN7, 26S proteasome re 32.0 1.4E+02 0.0048 29.5 8.7 69 461-529 165-239 (429)
305 2yhe_A SEC-alkyl sulfatase; hy 37.5 10 0.00035 40.4 0.0 53 464-516 461-513 (668)
306 2rpa_A Katanin P60 ATPase-cont 30.8 49 0.0017 24.0 3.6 27 501-527 15-41 (78)
307 2dl1_A Spartin; SPG20, MIT, st 30.3 75 0.0026 25.0 4.8 31 462-492 20-50 (116)
308 3spa_A Mtrpol, DNA-directed RN 30.3 2.8E+02 0.0096 31.1 10.9 65 463-528 164-231 (1134)
309 3myv_A SUSD superfamily protei 30.0 1.1E+02 0.0038 30.5 7.6 29 498-526 190-218 (454)
310 3t5v_B Nuclear mRNA export pro 29.7 91 0.0031 31.2 6.7 38 460-497 216-254 (455)
311 3ax2_A Mitochondrial import re 29.1 1.4E+02 0.0046 21.3 5.6 33 502-534 21-53 (73)
312 3lew_A SUSD-like carbohydrate 28.5 1.2E+02 0.0041 30.7 7.6 30 498-527 203-232 (495)
313 3kez_A Putative sugar binding 27.4 1.2E+02 0.0043 30.2 7.4 29 498-526 196-224 (461)
314 4gq2_M Nucleoporin NUP120; bet 25.0 97 0.0033 34.5 6.5 79 470-552 816-917 (950)
315 3mcx_A SUSD superfamily protei 24.6 1.3E+02 0.0045 30.2 7.0 30 498-527 202-231 (477)
316 1wcr_A PTS system, N, N'-diace 22.6 1.2E+02 0.0041 23.3 4.7 31 461-491 15-45 (103)
317 2e2a_A Protein (enzyme IIA); h 22.3 1.2E+02 0.0042 23.3 4.7 31 461-491 17-47 (105)
318 2ynq_A ESSB; membrane protein, 20.5 2.9E+02 0.0098 23.0 6.8 80 468-553 12-94 (161)
319 3k1s_A PTS system, cellobiose- 20.4 1.4E+02 0.0047 23.2 4.7 31 461-491 19-49 (109)
320 3eab_A Spastin; spastin, MIT, 20.3 71 0.0024 23.8 2.8 31 462-492 14-47 (89)
No 1
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=7.1e-90 Score=705.74 Aligned_cols=404 Identities=26% Similarity=0.338 Sum_probs=340.4
Q ss_pred hhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCC
Q 008755 12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEG 73 (554)
Q Consensus 12 ~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g 73 (554)
++.+|+++++.+| . ++| +.|+ +|||++..+++++++|+ +++..||||||||+|||+|+++|
T Consensus 2 ~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G 80 (434)
T 2dc0_A 2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKG 80 (434)
T ss_dssp CHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTT
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCC
Confidence 5667777765544 2 343 6789 99999987766655442 35678999999999999999999
Q ss_pred cccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhc
Q 008755 74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153 (554)
Q Consensus 74 ~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaa 153 (554)
++||+||+.| . .++.+|+++|+|||++|||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+
T Consensus 81 ~~tt~Gs~~~-~--~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAa 157 (434)
T 2dc0_A 81 MPTRAGTKAP-L--PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVAL 157 (434)
T ss_dssp BCCCTTCSSC-C--CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHH
T ss_pred cccCCCCccc-C--CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHc
Confidence 9999999998 3 233899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC--CCCc
Q 008755 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ--RSPR 231 (554)
Q Consensus 154 g~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~--~~~~ 231 (554)
|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+. ..++ .++.
T Consensus 158 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~l 236 (434)
T 2dc0_A 158 GIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQNP 236 (434)
T ss_dssp TSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCSC
T ss_pred CCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999876 3332 3466
Q ss_pred eEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhh
Q 008755 232 QIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNH 309 (554)
Q Consensus 232 ~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 309 (554)
||++..+.+. ...++++.++++++++.|. |++|++ .++ | +.+. ...+..+...|.+..+
T Consensus 237 rig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p-~~~~-------~~~~~~~~~~e~~~~~ 297 (434)
T 2dc0_A 237 VFGVPLDFLE--GRLGVEVRKAFTRLLEDLPALRAEVRE-VSL--------P-LEGV-------YEVYTRLVRYEAARIH 297 (434)
T ss_dssp EEEECHHHHT--TCSCHHHHHHHHHHHHHTTTTTCEEEE-CCC--------C-CTTH-------HHHHHHHHHHHHHHHS
T ss_pred EEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------C-cHHH-------HHHHHHHHHHHHHHHH
Confidence 7777665432 3358899999999999986 776643 222 2 2211 1223334455666667
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCC-----chHH
Q 008755 310 NEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM-----LSED 384 (554)
Q Consensus 310 ~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~-----~~~~ 384 (554)
.+++....+.++|.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++.... ....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~ 377 (434)
T 2dc0_A 298 EKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGH 377 (434)
T ss_dssp HHHHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEH
T ss_pred HHHHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhh
Confidence 77776667789999999999999999999999999999999999999999999999999999999986421 1111
Q ss_pred HHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755 385 YQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (554)
Q Consensus 385 ~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~ 440 (554)
+ ..+..||.++|++|+|+||||+|+.+|+|+|+|+++++++|..++++++.+|+.
T Consensus 378 ~-~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~ 432 (434)
T 2dc0_A 378 R-EAFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR 432 (434)
T ss_dssp H-HHHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred h-hhhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence 2 234568999999999999999998889999999999999999999999999864
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=8.1e-89 Score=708.47 Aligned_cols=413 Identities=22% Similarity=0.277 Sum_probs=334.5
Q ss_pred hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCC--------CCCCCCCCCCCceeeecc
Q 008755 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQP--------LPPKAPHPLTGLSFAVSD 67 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~pL~Gvp~~vKD 67 (554)
+++.+|+++|+++++.+| . ++| +.|+.+|||++..+++++++| ++++. ||||||||+|||
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD 80 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKD 80 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEET
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEc
Confidence 466788999999977665 2 243 778999999998876655443 33556 999999999999
Q ss_pred ccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhH
Q 008755 68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147 (554)
Q Consensus 68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGs 147 (554)
+|+++|++||+||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||
T Consensus 81 ~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGs 158 (485)
T 3ip4_A 81 NIITNGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGS 158 (485)
T ss_dssp TBCBTTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHH
T ss_pred CcccCCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHH
Confidence 999999999999999876 478999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008755 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA- 226 (554)
Q Consensus 148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~- 226 (554)
||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 159 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~ 238 (485)
T 3ip4_A 159 AAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDS 238 (485)
T ss_dssp HHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCT
T ss_pred HHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765322
Q ss_pred ----------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhh
Q 008755 227 ----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHK 288 (554)
Q Consensus 227 ----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~ 288 (554)
..++.||++..+++. ...++++.++++++++.|. |++|++ .++ |.+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~-- 305 (485)
T 3ip4_A 239 TSAPVDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEE-VSL--------PNTKFG-- 305 (485)
T ss_dssp TSCCCCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH--
T ss_pred cccccCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH--
Confidence 124567777665432 2357899999999999986 887743 222 222211
Q ss_pred hhhhHHHHHHHHHHHHHHhhh------------------HH-HHhhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHH
Q 008755 289 TNGELKNVMRLIQRYEFKNNH------------------NE-WIESVKPALDPDISAEIGEMLE-----ISETVIENCKS 344 (554)
Q Consensus 289 ~~~~~~~~~~~~~~~e~~~~~------------------~~-~~~~~~~~~~p~~~~~~~~g~~-----~s~~~~~~a~~ 344 (554)
...+..+...|+...+ .+ +.......+++.++.++..+.. ....+|.++++
T Consensus 306 -----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~ 380 (485)
T 3ip4_A 306 -----IPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQK 380 (485)
T ss_dssp -----HHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 1112222222322211 11 1122234678888888876642 22245889999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEecc
Q 008755 345 IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARH 424 (554)
Q Consensus 345 ~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~ 424 (554)
.|..+++.+.++|+++|+||+||+|.+||+++....+..... ....||.++|++|+|+||||+|+.+|+|+|+|+++++
T Consensus 381 ~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~ 459 (485)
T 3ip4_A 381 VRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKP 459 (485)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECST
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCC
Confidence 999999999999999999999999999999987533222111 1223899999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHH
Q 008755 425 GGDRFLLDTVQNMYASL 441 (554)
Q Consensus 425 ~~d~~ll~~a~~le~~l 441 (554)
++|..|+++++++|+..
T Consensus 460 ~~d~~lL~~A~~lE~~~ 476 (485)
T 3ip4_A 460 FDEKTLYRVAYQYETQY 476 (485)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998754
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=4.1e-88 Score=699.33 Aligned_cols=413 Identities=24% Similarity=0.321 Sum_probs=334.6
Q ss_pred hHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCC-CCCCCCCceeeeccccccCCcc
Q 008755 8 LWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPK-APHPLTGLSFAVSDLFDIEGYV 75 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~pL~Gvp~~vKD~~~~~g~~ 75 (554)
|+.+|+++|+++++.+| . ++| +.|+.+|||++..+++++++|++-+ ..||||||||+|||+|+++|++
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~ 81 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEK 81 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSB
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCC
Confidence 45678899999877665 2 243 7789999999988776655543322 2799999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCC
Q 008755 76 TGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADL 155 (554)
Q Consensus 76 tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~ 155 (554)
||+||+.+.+ +++.+|+++|+|||++|||++||||||||+++.+|+|++||+|+||||++|+|||||||||++||+|+
T Consensus 82 tt~Gs~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~ 159 (478)
T 3h0l_A 82 TTCASKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLS 159 (478)
T ss_dssp CCTTCGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTS
T ss_pred cCCcCHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCC
Confidence 9999999876 47889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc---------
Q 008755 156 VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------- 226 (554)
Q Consensus 156 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~--------- 226 (554)
+|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 160 ~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~ 239 (478)
T 3h0l_A 160 APVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVP 239 (478)
T ss_dssp SSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCC
T ss_pred CceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998765332
Q ss_pred --------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHH
Q 008755 227 --------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV 296 (554)
Q Consensus 227 --------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~ 296 (554)
..++.||++..+.+. ...++++.++++++++.|. |++|++ .++ |.+... ...
T Consensus 240 ~~~~~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~--------p~~~~~-------~~~ 301 (478)
T 3h0l_A 240 EWSEEVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGFEIKE-VSL--------PHVKYS-------IPT 301 (478)
T ss_dssp CHHHHTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH-------HHH
T ss_pred chhhhhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH-------HHH
Confidence 134567777665432 3358899999999999986 877743 222 222211 112
Q ss_pred HHHHHHHHHHhhh------------------HH-HHhhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHH
Q 008755 297 MRLIQRYEFKNNH------------------NE-WIESVKPALDPDISAEIGEMLE-----ISETVIENCKSIRNEMRSA 352 (554)
Q Consensus 297 ~~~~~~~e~~~~~------------------~~-~~~~~~~~~~p~~~~~~~~g~~-----~s~~~~~~a~~~r~~~~~~ 352 (554)
+..+...|++..+ .+ +...+...+++.++.++..+.. ....+|.++++.|..+++.
T Consensus 302 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~ 381 (478)
T 3h0l_A 302 YYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITND 381 (478)
T ss_dssp HHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHH
Confidence 2222222332211 11 1122234578888888877652 2234688999999999999
Q ss_pred HHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHH
Q 008755 353 ISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432 (554)
Q Consensus 353 ~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~ 432 (554)
+.++|+++|+||+||+|.+||+++....+..... ....||.++|++|+|+||||+|+.+|+|+|+|+++++++|..+++
T Consensus 382 ~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~ 460 (478)
T 3h0l_A 382 FLKAFEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQ 460 (478)
T ss_dssp HHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHH
T ss_pred HHHHHhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHH
Confidence 9999999999999999999999987533322111 122489999999999999999998999999999999999999999
Q ss_pred HHHHHHHHH
Q 008755 433 TVQNMYASL 441 (554)
Q Consensus 433 ~a~~le~~l 441 (554)
++.++|+..
T Consensus 461 ~A~~lE~~~ 469 (478)
T 3h0l_A 461 ISYLWEQKF 469 (478)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998754
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=6.2e-88 Score=695.78 Aligned_cols=405 Identities=24% Similarity=0.349 Sum_probs=329.6
Q ss_pred hhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCCh
Q 008755 13 GLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81 (554)
Q Consensus 13 ~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~ 81 (554)
+++|+++++.+| . ++| +.|+.+|||++.. ++++++|++-+...|||||||+|||+|+++|++||+||+
T Consensus 3 a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~ 81 (471)
T 3kfu_E 3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSR 81 (471)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCH
Confidence 566676655444 2 343 7789999999998 877776654444459999999999999999999999999
Q ss_pred hhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccc
Q 008755 82 EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLG 161 (554)
Q Consensus 82 ~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~G 161 (554)
.+.+ +++.+|+++|+|||++|||++||||||||+++.+|+|++||+|+||||++|+|||||||||++||+|++|+|+|
T Consensus 82 ~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~G 159 (471)
T 3kfu_E 82 LLEN--FVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALG 159 (471)
T ss_dssp TTTT--CCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEE
T ss_pred hHcC--CCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccc
Confidence 9876 47889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc---------------
Q 008755 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------------- 226 (554)
Q Consensus 162 tD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~--------------- 226 (554)
||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 160 tDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~ 239 (471)
T 3kfu_E 160 SDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALE 239 (471)
T ss_dssp EESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSC
T ss_pred cCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999988754322
Q ss_pred -CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHH
Q 008755 227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY 303 (554)
Q Consensus 227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~ 303 (554)
..++.||++..+.+ ...++++.++++++++.|. |++|++ .+ +|.+... ...+..+...
T Consensus 240 ~~~~~lrIgv~~~~~---~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~-------~~~~~~~~~~ 300 (471)
T 3kfu_E 240 GPLPPLRLGVVREAL---AGNSPGVERALEEALKVFRELGLSVRE-VS--------WPSLPQA-------LAAYYILAPA 300 (471)
T ss_dssp CCCSSCEEEEEGGGT---TTCCHHHHHHHHHHHHHHHTTTCEEEE-EC--------CTTGGGH-------HHHHHHHHHH
T ss_pred cCCCCCEEEEECCcc---CCCCHHHHHHHHHHHHHHHHcCCeeee-ec--------CccHHHH-------HHHHHHHHHH
Confidence 12456777766543 3357899999999999986 777643 22 2322221 1122222222
Q ss_pred HHHhh-----------------hHHHHhhhCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 008755 304 EFKNN-----------------HNEWIESVKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAISSLLKDDG 361 (554)
Q Consensus 304 e~~~~-----------------~~~~~~~~~~~~~p~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~D 361 (554)
|++.. +.+++...+..+++.++.++..+..+ +..+|.++++.|..+++.|.++|+++|
T Consensus 301 e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 380 (471)
T 3kfu_E 301 EASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVD 380 (471)
T ss_dssp HHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHhhhhccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 32221 22233322334899999988776543 335899999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755 362 ILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (554)
Q Consensus 362 ~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l 441 (554)
+||+||+|.+||+++....+...+.. ..||.++|++|+|+||||+|+.+|+|+|+|+++++++|..+++++.++|+..
T Consensus 381 vll~Pt~~~~a~~~~~~~~~~~~~~~--~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~ 458 (471)
T 3kfu_E 381 LLLLPTTPHPAFPFGARRDPLAMYRE--DLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEAT 458 (471)
T ss_dssp EEEEESCSSSCCBTTTTCSHHHHHGG--GTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred EEEeCCcCCCCCccccccchHHHHHH--hhhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999865332222221 2389999999999999999998899999999999999999999999998653
No 5
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=7e-87 Score=678.63 Aligned_cols=393 Identities=22% Similarity=0.270 Sum_probs=332.8
Q ss_pred hhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCC
Q 008755 12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGH 80 (554)
Q Consensus 12 ~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs 80 (554)
|+.+|+++++.+| . ++| +.|+.+|||++..++++ + ...||||||||+|||+|+++|++||+||
T Consensus 3 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs 76 (414)
T 1o9p_A 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGS 76 (414)
T ss_dssp CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTS
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCC
Confidence 5677777766554 1 343 67899999999887765 2 4579999999999999999999999999
Q ss_pred hhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCcccc
Q 008755 81 PEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSL 160 (554)
Q Consensus 81 ~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~ 160 (554)
+.|.+ .++.+||++|+|||++|||++||||||||++ .|+ |+|+||||++|+||||||||||+||+|++|+|+
T Consensus 77 ~~~~~--~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~al 148 (414)
T 1o9p_A 77 EIYRG--WQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLAL 148 (414)
T ss_dssp GGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEE
T ss_pred Hhhcc--CCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEE
Confidence 99986 4788999999999999999999999999998 444 999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcc---cCCCCceEEEcc
Q 008755 161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFA---AQRSPRQIIIAD 237 (554)
Q Consensus 161 GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~---~~~~~~~l~i~~ 237 (554)
|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+.. ...++.||++..
T Consensus 149 GtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~ 228 (414)
T 1o9p_A 149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVR 228 (414)
T ss_dssp EEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECC
T ss_pred eeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999998876421 123566787765
Q ss_pred chhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhh
Q 008755 238 DCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES 315 (554)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 315 (554)
+.+. ...++++.++++++++.|. |++|++ .+ .|..... +...+..+..+|.+..+..++..
T Consensus 229 ~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~------~~~~~~~~~~~e~~~~~~~~~~~ 291 (414)
T 1o9p_A 229 QEFA--GAVEPAAEQGLQAAIKAAERAGASVQA-ID--------LPEAVHE------AWRIHPIIQDFEAHRALAWEFSE 291 (414)
T ss_dssp CGGG--CCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CCHHHHH------HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5432 3357899999999999886 777643 11 2211100 22233345556777777777777
Q ss_pred hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhc
Q 008755 316 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI 395 (554)
Q Consensus 316 ~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~ 395 (554)
....++|.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||++.++|+++...... ..||.+
T Consensus 292 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~-------~~~t~~ 364 (414)
T 1o9p_A 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGD-------PRYNRL 364 (414)
T ss_dssp SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCCC-------GGGTHH
T ss_pred ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCcc-------cchhhh
Confidence 7778999999999999999999999999999999999999999999999999999999986432111 258999
Q ss_pred ccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755 396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (554)
Q Consensus 396 ~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~ 442 (554)
+|++|+|+||||+|+..|+|+|+|+++++++|..++++++.+|+.+.
T Consensus 365 ~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 365 WTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp HHHHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred hHhcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 99999999999999866999999999999999999999999997654
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=1.7e-87 Score=700.77 Aligned_cols=417 Identities=18% Similarity=0.231 Sum_probs=340.9
Q ss_pred hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeecccc-ccCCc
Q 008755 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLF-DIEGY 74 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~-~~~g~ 74 (554)
+++. |+.+|+++++.++ . ++| +.|+.+|||++...++++++|++ + .||||||||+|||+| +++|+
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~ 81 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGD 81 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTS
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCC
Confidence 4556 8999999977665 2 343 67899999999887766665544 3 799999999999999 99999
Q ss_pred ccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcC
Q 008755 75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD 154 (554)
Q Consensus 75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag 154 (554)
+||+||+.+...++++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|
T Consensus 82 ~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG 161 (493)
T 3a2q_A 82 INTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAA 161 (493)
T ss_dssp BCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTT
T ss_pred cccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcC
Confidence 99999999982124789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCcccccccccCcccccCCCCccccCCc--c-ccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----
Q 008755 155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGI--I-PISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----- 226 (554)
Q Consensus 155 ~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~--~-p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~----- 226 (554)
++|+|+|||||||||+||+||||||||||+||||+.|+ + ++++++|++|||||+++|+..+++++.+.+..+
T Consensus 162 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~ 241 (493)
T 3a2q_A 162 LSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAP 241 (493)
T ss_dssp SCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCC
T ss_pred CCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCccccc
Confidence 99999999999999999999999999999999999998 5 888899999999999999999999998754322
Q ss_pred ------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhh
Q 008755 227 ------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE 292 (554)
Q Consensus 227 ------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~ 292 (554)
..++.||++..+.+......++++.++++++++.|. |++|++ .++. .+.. ..
T Consensus 242 ~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~--------~~~~-----~~ 307 (493)
T 3a2q_A 242 TASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND-AYPE--------ALGD-----RS 307 (493)
T ss_dssp CCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCCG--------GGGC-----CT
T ss_pred CCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC--------ccCH-----HH
Confidence 124557777655431012357899999999999886 887744 2221 1110 00
Q ss_pred HHHHHHHHHHHHHHh---hhHHHHh--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEc
Q 008755 293 LKNVMRLIQRYEFKN---NHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL-KDDGILVTP 366 (554)
Q Consensus 293 ~~~~~~~~~~~e~~~---~~~~~~~--~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~D~ll~P 366 (554)
+...+..+...|++. .+..++. .....+++.++.+++.+..++..+|.++++.|..+++.+.++| +++|+||+|
T Consensus 308 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~P 387 (493)
T 3a2q_A 308 FLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILP 387 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcC
Confidence 111222333334433 2333342 2345789999999999999999999999999999999999999 999999999
Q ss_pred CCCCCCCCCCCCCCc------------hHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHH
Q 008755 367 TTAYPPPKLGGKEML------------SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDT 433 (554)
Q Consensus 367 t~~~~ap~~~~~~~~------------~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~ 433 (554)
|++.+||+++..... ...+ ..+..||.++|++|+|+||||+|+. +|+|+|+|+++++++|..++++
T Consensus 388 t~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~ 466 (493)
T 3a2q_A 388 TVTRQTPEIGELMLAKGTDLEGRQSAFISGS-LQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQV 466 (493)
T ss_dssp SCSSCCCBTTTTCCCTTCCCCSSCGGGSHHH-HHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHH
T ss_pred CCCCCCCCCcccccccccccccccchhhhhh-hhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHH
Confidence 999999999865321 1112 2345689999999999999999975 8999999999999999999999
Q ss_pred HHHHHHHH
Q 008755 434 VQNMYASL 441 (554)
Q Consensus 434 a~~le~~l 441 (554)
++.+|+..
T Consensus 467 A~~lE~~~ 474 (493)
T 3a2q_A 467 AAQLEGAL 474 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99998764
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=1.3e-86 Score=691.19 Aligned_cols=407 Identities=21% Similarity=0.288 Sum_probs=325.5
Q ss_pred hhHHHhhhhhh--hhHHHHHH----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCC
Q 008755 7 NLWVLLGLGLA--GILLMTKK----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGF 78 (554)
Q Consensus 7 ~~~~~~~~~~~--~~~~~~~~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~ 78 (554)
+++.+++.+|- +.++..|. ++| +.|+.+|||++..+++++++ . ||||||||+|||+|+++|++||+
T Consensus 6 ~~~~~s~~~li~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald~-----~-gpL~GvPi~vKD~~~v~G~~Tt~ 79 (476)
T 2gi3_A 6 DFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEK-----K-GKFWGIPVAIKDNILTLGMRTTC 79 (476)
T ss_dssp CGGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCC-----C-STTTTCEEEEETTBCCSSSCCCT
T ss_pred ccccCCHHHHHHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhhc-----c-CCcCCceEEEEcCccCCCCccCc
Confidence 45556666661 11333333 343 67899999999988877621 2 99999999999999999999999
Q ss_pred CChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCcc
Q 008755 79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF 158 (554)
Q Consensus 79 Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~ 158 (554)
||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+
T Consensus 80 Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~ 157 (476)
T 2gi3_A 80 ASRILEN--YESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVA 157 (476)
T ss_dssp TCGGGTT--CCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSE
T ss_pred cChhhcC--CCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCce
Confidence 9999976 47889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc------------
Q 008755 159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------ 226 (554)
Q Consensus 159 a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~------------ 226 (554)
|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+
T Consensus 158 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~ 237 (476)
T 2gi3_A 158 ALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLS 237 (476)
T ss_dssp EEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSST
T ss_pred EeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999988754322
Q ss_pred ----CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHH
Q 008755 227 ----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI 300 (554)
Q Consensus 227 ----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~ 300 (554)
..++.||++..+.+. ...++++.++++++++.|. |++|++ .++ |.+.... ..+..+
T Consensus 238 ~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~~-------~~~~~~ 299 (476)
T 2gi3_A 238 EIEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVER-VKI--------PHIKYSV-------ATYYVI 299 (476)
T ss_dssp TTTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGHH-------HHHHHH
T ss_pred hhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHH-------HHHHHH
Confidence 124567777665432 3357899999999999886 887754 222 2221111 111112
Q ss_pred HHHHHHhhh-----------------HHHHh-hhCCCCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhc
Q 008755 301 QRYEFKNNH-----------------NEWIE-SVKPALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLL 357 (554)
Q Consensus 301 ~~~e~~~~~-----------------~~~~~-~~~~~~~p~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~ 357 (554)
...|.+..+ .+++. ...+.+++.++.++..+..++. .+|.++++.|..+++.+.++|
T Consensus 300 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~ 379 (476)
T 2gi3_A 300 APAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVL 379 (476)
T ss_dssp HHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 11222 1234678888888887765443 378899999999999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHH
Q 008755 358 KDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM 437 (554)
Q Consensus 358 ~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~l 437 (554)
+++|+||+||+|.+||+++........+. ...||.++|++|+|+||||+|+.+|+|+|+|+++++++|..|+++++++
T Consensus 380 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~l 457 (476)
T 2gi3_A 380 SQYDAILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAI 457 (476)
T ss_dssp HHSSEEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred hcCCEEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999999999986212222222 1358999999999999999999899999999999999999999999999
Q ss_pred HHHH
Q 008755 438 YASL 441 (554)
Q Consensus 438 e~~l 441 (554)
|+..
T Consensus 458 E~~~ 461 (476)
T 2gi3_A 458 EKNS 461 (476)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8764
No 8
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=6.1e-86 Score=689.87 Aligned_cols=407 Identities=23% Similarity=0.270 Sum_probs=327.5
Q ss_pred ccchhHHHhhhhhhhhHHHHH-----H----Hhh--hcc---CCcCceeeccccCCCCCCC-------CCCCCCCCCCce
Q 008755 4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLS 62 (554)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~---~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp 62 (554)
+.-++..+++.+|+++++.++ . ++| +.| |.+|||++..++ ++++|+ +++..|||||||
T Consensus 4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvP 82 (503)
T 1m22_A 4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIP 82 (503)
T ss_dssp -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCE
T ss_pred CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCce
Confidence 344677889999999977665 2 343 667 999999998776 655442 356679999999
Q ss_pred eeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCcccccc-----ccCCCCCCCCCCCCCCCCC
Q 008755 63 FAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPS 137 (554)
Q Consensus 63 ~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~-----~~~~~~~~~g~~~NP~~~~ 137 (554)
|+|||+|+++|++||+||+.+.+ +++ +||++|+|||++|||++||||||||++ +.+|+|++||+|+||||++
T Consensus 83 i~vKD~~~v~G~~Tt~Gs~~~~~--~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~ 159 (503)
T 1m22_A 83 LLLKDNINAAPMATSAGSLALQG--FRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS 159 (503)
T ss_dssp EEEETTBCCTTSCCCTTCGGGTT--CCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred eEeecccccCCCCcCCCCHhhcC--CCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999986 478 999999999999999999999999998 7789999999999999999
Q ss_pred CCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHH
Q 008755 138 QMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGH 217 (554)
Q Consensus 138 ~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~ 217 (554)
|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++
T Consensus 160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~ 239 (503)
T 1m22_A 160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239 (503)
T ss_dssp BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccc---------------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcc
Q 008755 218 VLLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGE 274 (554)
Q Consensus 218 ~l~~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~ 274 (554)
++.+.+..+ ..++.||++..+.+. .++++.++++++++.|. |++|++ .++.
T Consensus 240 vl~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p- 313 (503)
T 1m22_A 240 AIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVVP-VELP- 313 (503)
T ss_dssp HHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEEE-ECCT-
T ss_pred HHcCCCCCCccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcCCEEEE-eCCC-
Confidence 988654222 124567777665431 46788899999998886 888753 2222
Q ss_pred cccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHh---------------------hhCCCCCHHHHHHHHHhhc
Q 008755 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE---------------------SVKPALDPDISAEIGEMLE 333 (554)
Q Consensus 275 ~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---------------------~~~~~~~p~~~~~~~~g~~ 333 (554)
.+.++.. .+..+..+|++..+..|+. .....+++.++.++..+..
T Consensus 314 -------~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (503)
T 1m22_A 314 -------NQGAWAE-------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAG 379 (503)
T ss_dssp -------TTTTTHH-------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCC
T ss_pred -------cHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCC
Confidence 1111100 0011111122211111111 1234678889999988888
Q ss_pred CCHHHHHHHHHHHHHHHHH--HHhhcCC--CcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCC
Q 008755 334 ISETVIENCKSIRNEMRSA--ISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLG 409 (554)
Q Consensus 334 ~s~~~~~~a~~~r~~~~~~--~~~~~~~--~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g 409 (554)
++..+|.++++.|..+++. +.++|++ +|+||+||+ .++|+++..... + ...||.++|++|+|+||||+|
T Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~~---~---~~~~t~~~nl~G~PaisvP~g 452 (503)
T 1m22_A 380 LADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGDD---F---PGESYSAAAVAGYPSLTVPMG 452 (503)
T ss_dssp TTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC---C---C---TTCCHHHHHHHTCCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccCc---c---cccccccchhhCCCeEEeccc
Confidence 9999999999888888776 9999974 999999999 567776522111 1 145899999999999999999
Q ss_pred CCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755 410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (554)
Q Consensus 410 ~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l 441 (554)
+.+|+|+|+|+++++++|..|++++..+|+..
T Consensus 453 ~~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~ 484 (503)
T 1m22_A 453 QIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT 484 (503)
T ss_dssp EETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCChHHHHHHHHHHHHhh
Confidence 98999999999999999999999999999764
No 9
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=6.7e-85 Score=681.43 Aligned_cols=376 Identities=23% Similarity=0.298 Sum_probs=308.2
Q ss_pred CCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCC
Q 008755 52 PKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT 131 (554)
Q Consensus 52 ~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~ 131 (554)
+...||||||||+|||||+++|++||+||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+
T Consensus 82 g~~~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~ 159 (521)
T 3a1k_A 82 PTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEG--FTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVR 159 (521)
T ss_dssp CSSCCTTTTCEEEEETTBCCTTSCBCTTCTTTTT--BCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCE
T ss_pred CCCCCCCCCCEEEEEcCcccCCcccCCCChhhcC--CCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcC
Confidence 4567999999999999999999999999999976 47899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHH
Q 008755 132 NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKI 211 (554)
Q Consensus 132 NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~d 211 (554)
||||++|+||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|
T Consensus 160 NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D 239 (521)
T 3a1k_A 160 NPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHD 239 (521)
T ss_dssp ETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHH
T ss_pred CCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccC------------------CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceecc
Q 008755 212 LRHVGHVLLQLPFAAQ------------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHEN 271 (554)
Q Consensus 212 l~~v~~~l~~~~~~~~------------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~ 271 (554)
+..+++++.+.+..++ .++.||++..+.+. ....++++.++++++++.|. |++|++ .+
T Consensus 240 ~a~~l~vlag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v~ 317 (521)
T 3a1k_A 240 AALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFG-HAVSQPEVDDAVRAAAHSLTEIGCTVEE-VN 317 (521)
T ss_dssp HHHHHHHHCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGSC-CSSSCHHHHHHHHHHHHGGGGGTCEEEE-EC
T ss_pred HHHHHHHHhCCCCCCccccccCCCcchhhhhccCccCcEEEEECcccc-ccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC
Confidence 9999999987543221 23457777655432 12247889999999999886 777643 22
Q ss_pred CcccccccCCChhhHhhhhhhH--HHHHHHH-------------HHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhh----
Q 008755 272 LGEYFDSKVPSLKGFHKTNGEL--KNVMRLI-------------QRYEFKNNHNEWIESVKPALDPDISAEIGEML---- 332 (554)
Q Consensus 272 l~~~v~~~~p~~~~~~~~~~~~--~~~~~~~-------------~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~---- 332 (554)
+ |.+......+..+ ......+ ...+....+..|...+...+.|.++.++..|.
T Consensus 318 ~--------p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~ 389 (521)
T 3a1k_A 318 I--------PWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGIT 389 (521)
T ss_dssp C--------THHHHHHHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHT
T ss_pred C--------CchHhHHHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhc
Confidence 2 2221110000000 0000000 00122223444455556678999999887764
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHH---HhhhhhcccccCCceecccCC
Q 008755 333 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNR---AFSLLSIASVSGCCQVTVPLG 409 (554)
Q Consensus 333 ~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~---~~~~t~~~nl~G~PaisvP~g 409 (554)
.++..+|.++++.|..+++.|+++|+++|+||+||+|.+||+++....+...+..+ +..||.++|++|+|+||||+|
T Consensus 390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g 469 (521)
T 3a1k_A 390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG 469 (521)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence 36778999999999999999999999999999999999999998754333333333 235799999999999999999
Q ss_pred CCCCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008755 410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (554)
Q Consensus 410 ~~~g~p~g~~~~~~~~~d~~ll~~a~~le~ 439 (554)
+.+|+|+|+|+++++++|..+++++.++|+
T Consensus 470 ~~~GlPvGlQlvg~~~~d~~LL~~A~~~E~ 499 (521)
T 3a1k_A 470 LVNGLPVGMMITGRHFDDATVLRVGRAFEK 499 (521)
T ss_dssp EETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999987
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=9e-82 Score=659.26 Aligned_cols=418 Identities=20% Similarity=0.222 Sum_probs=322.8
Q ss_pred chhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCc
Q 008755 6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGY 74 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~ 74 (554)
.+++.+|+++|+++++.++ . ++| +.|+.+|||++.+++. .+++.+....||||||||+|||+|+++|+
T Consensus 66 ~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~~~~~G~ 144 (573)
T 3ppm_A 66 EALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKECFSYKGH 144 (573)
T ss_dssp HHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETTBCCBTC
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcccCCCCC
Confidence 5688899999999977665 2 233 7789999999987542 22222223359999999999999999999
Q ss_pred ccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcC
Q 008755 75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD 154 (554)
Q Consensus 75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag 154 (554)
+||+||..+.+ .++.+||++|+||+++|||++||||||||+++..++|+.||+|+||||++++||||||||||+||+|
T Consensus 145 ~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag 222 (573)
T 3ppm_A 145 DSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSG 222 (573)
T ss_dssp CCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHTT
T ss_pred CcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHcC
Confidence 99999999976 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCcccccccccCcccccCCCCccccCCccccCCC----CCcccccccCHHHHHHHHHHhcCCC-------
Q 008755 155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS----LDTVGWFARDPKILRHVGHVLLQLP------- 223 (554)
Q Consensus 155 ~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s----~d~~G~~ar~~~dl~~v~~~l~~~~------- 223 (554)
++++|+|||||||||+||+||||||||||+||||+.|++|.+++ +|++|||||+++|+..+++++.+.+
T Consensus 223 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~~ 302 (573)
T 3ppm_A 223 GSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPT 302 (573)
T ss_dssp SCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCTT
T ss_pred CCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccccCCC
Confidence 99999999999999999999999999999999999999998765 8999999999999999998876532
Q ss_pred -----cc----cCCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhh--
Q 008755 224 -----FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN-- 290 (554)
Q Consensus 224 -----~~----~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~-- 290 (554)
+. ...++.||++..+.. ...+++++.++++++++.|. |++|++ .+ .|.+.+.....
T Consensus 303 ~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~--------~p~~~~~~~~~~~ 371 (573)
T 3ppm_A 303 VPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGHTLIP-FL--------PNNIPYALEVLST 371 (573)
T ss_dssp SCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CTTHHHHHHTHHH
T ss_pred CCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CccHHHHHHHHHH
Confidence 11 123566777765432 23357899999999999986 888754 22 22222111000
Q ss_pred ----hh-HHHHHHHHHHHHHH--------------hhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 008755 291 ----GE-LKNVMRLIQRYEFK--------------NNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRS 351 (554)
Q Consensus 291 ----~~-~~~~~~~~~~~e~~--------------~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~ 351 (554)
.+ .......+.. |.. .....++......+.|.+...+..+...+..++++.+..|..+++
T Consensus 372 ~~~~~dg~~~~~~~~~~-e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~ 450 (573)
T 3ppm_A 372 GGLFSDGGRSFLQNFKG-DFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQ 450 (573)
T ss_dssp HHHTTBTTHHHHGGGTT-SCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHhcc-CcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 00 0000000000 000 000000000112344555555666677899999999999999999
Q ss_pred HHHhhcC--CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC------------------
Q 008755 352 AISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY------------------ 411 (554)
Q Consensus 352 ~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~------------------ 411 (554)
+|.+.|+ ++|+||+|+ +.++++++..... .....||.+||++|+|+++||+|+.
T Consensus 451 ~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~-----~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~~~~ 524 (573)
T 3ppm_A 451 SVIAQWKAMNLDVLLTPM-LGPALDLNTPGRA-----TGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDI 524 (573)
T ss_dssp HHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGC-----GGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSSCSH
T ss_pred HHHHHHhhcCCCEeeCCC-CCCCcCCcccccc-----ccccchhhhhHhhCCCeEEEecccccccccccccccccccchh
Confidence 9999995 599999999 5588888742110 1235689999999999999999853
Q ss_pred ------------CCCCceeEEEeccCCcHHHHHHHHHHHHHHHHH
Q 008755 412 ------------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ 444 (554)
Q Consensus 412 ------------~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~~~ 444 (554)
+|+|+|+|+++++++|+.++.+++.+|+.++..
T Consensus 525 ~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~ 569 (573)
T 3ppm_A 525 WDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ 569 (573)
T ss_dssp HHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred hhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcc
Confidence 599999999999999999999999999876543
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=3.5e-16 Score=132.40 Aligned_cols=96 Identities=32% Similarity=0.496 Sum_probs=93.3
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
..+|+.++.++++|+.+++.|+|++|+..|+++|+++|+++.+|+++|.+|+++|++++|+.+|+++++++|++..+|++
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|.++..+|++++|++
T Consensus 87 lg~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 87 KAACLVAMREWSKAQR 102 (126)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH
Confidence 9999999999999975
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.65 E-value=1.3e-15 Score=132.94 Aligned_cols=103 Identities=18% Similarity=0.102 Sum_probs=98.4
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
..+......+|+++..++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|+.+|+|++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 44566677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++.+++++|.+|..+|++++|++
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999975
No 13
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.58 E-value=1.2e-14 Score=125.59 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NAT-----YYSNRAAAYLESGSFLQAEADCTKAINL-- 527 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~l-- 527 (554)
..+..++++|+.+++.|+|++|+..|+++|+++|+ +.. +|+|+|.++.++|+|++|+.+|+++|++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 46778999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHcCCHHHHhc
Q 008755 528 -----DKKNVKAY----LRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 -----~p~~~~~~----~~~g~~~~~~~~~~~A~~ 553 (554)
+|++.++| |++|.+|..+|++++|++
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 99999999 999999999999999986
No 14
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=1.8e-14 Score=121.99 Aligned_cols=93 Identities=34% Similarity=0.521 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VK 533 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~ 533 (554)
++.+.++.++|+.+++.|+|++|+.+|+++|+++|++..+|+++|.+|+++|+|++|+.+|+++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999876 45
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|+++|.++..++++++|++
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~ 104 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQ 104 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999999975
No 15
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=6e-14 Score=118.20 Aligned_cols=93 Identities=41% Similarity=0.557 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
|.++..++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|+++|+|++|+.+|+++++++|++..+++++|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
++..+|++++|++
T Consensus 81 ~~~~~~~~~~A~~ 93 (126)
T 3upv_A 81 AQIAVKEYASALE 93 (126)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHHhCHHHHHH
Confidence 9999999999975
No 16
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.54 E-value=2e-14 Score=125.58 Aligned_cols=96 Identities=10% Similarity=-0.013 Sum_probs=90.6
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....|+++..++.+|.+|++.|+|++|+..|+++|+++|+++.+|+++|.+|.++|++++|+..|+++++++|+++.+++
T Consensus 24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 34557888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHh
Q 008755 537 RRGTAREMLGYYKEAI 552 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~ 552 (554)
++|.+|..+|++++|.
T Consensus 104 ~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRA 119 (150)
T ss_dssp HHHHHHHHHCSSSSHH
T ss_pred HHHHHHHHcCChHHHH
Confidence 9999999999987654
No 17
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.53 E-value=7e-14 Score=121.75 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=93.4
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
...+|++...++.+|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+..|+++++++|+++.+++
T Consensus 14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
++|.+|..+|++++|++
T Consensus 94 ~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 94 HAAECLLQXGELAEAES 110 (148)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 99999999999999975
No 18
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.52 E-value=1.2e-13 Score=119.13 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=94.7
Q ss_pred ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
......+|++...++.+|..+++.|+|++|+..|+++++.+|+++.+|+++|.+|..+|+|++|+..|+++++++|+++.
T Consensus 8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++++|.+|..+|++++|++
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999974
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.50 E-value=2.8e-13 Score=119.90 Aligned_cols=96 Identities=39% Similarity=0.485 Sum_probs=91.0
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
...+.++..++.+|..+++.|+|++|+..|+++++++|++..+|+++|.+|+++|+|++|+.+|+++++++|++..++++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|.+|..+|++++|++
T Consensus 85 lg~~~~~~g~~~~A~~ 100 (164)
T 3sz7_A 85 LGLARFDMADYKGAKE 100 (164)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHccCHHHHHH
Confidence 9999999999999975
No 20
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.47 E-value=2.1e-13 Score=120.47 Aligned_cols=93 Identities=30% Similarity=0.454 Sum_probs=87.7
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------------------NGNNATYYSNRAAAYLESGSFLQAEADCT 522 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 522 (554)
.+.+..+..+|+.+++.|+|++|+..|+++|++ +|.+..+|+++|.||+++|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 467889999999999999999999999999999 77788999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 523 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++++++|++..+|+++|.+|..+|++++|++
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 9999999999999999999999999999975
No 21
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=7.9e-13 Score=110.70 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
...++.+|..+++.|++++|+..|+++++.+|++..+|+++|.++..+|++++|+..|+++++++|++..+++++|.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHhc
Q 008755 544 MLGYYKEAIE 553 (554)
Q Consensus 544 ~~~~~~~A~~ 553 (554)
.+|++++|++
T Consensus 97 ~~g~~~~A~~ 106 (121)
T 1hxi_A 97 NEHNANAALA 106 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HcCCHHHHHH
Confidence 9999999974
No 22
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.43 E-value=8.9e-13 Score=111.25 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=85.6
Q ss_pred hcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
...+...+..+|.++..|+++|.++++.|++++|+..|+++|+++|++..+|+++|.+|..+|+|++|+.+|+++++++|
T Consensus 33 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 33 MRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 33444455667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 008755 530 KNVKAYLRRGTAR 542 (554)
Q Consensus 530 ~~~~~~~~~g~~~ 542 (554)
++.+++..++.++
T Consensus 113 ~~~~a~~~l~~~l 125 (126)
T 4gco_A 113 SNEEAREGVRNCL 125 (126)
T ss_dssp TCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhc
Confidence 9999999998774
No 23
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=1.6e-12 Score=110.82 Aligned_cols=94 Identities=37% Similarity=0.507 Sum_probs=90.0
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
++.++..++.+|..++..|+|++|+..|+++++++|++..+|+++|.+++.+++|++|+..++++++++|++..+++++|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++..+|++++|++
T Consensus 85 ~~~~~~~~~~~A~~ 98 (137)
T 3q49_B 85 QCQLEMESYDEAIA 98 (137)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHHhhHHHHHH
Confidence 99999999999974
No 24
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=8.9e-13 Score=107.80 Aligned_cols=91 Identities=25% Similarity=0.363 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYL 536 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~ 536 (554)
++..++.+|..++..|+|++|+..|+++++++|+++.+++++|.+|+++|+|++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
++|.++..+|++++|++
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 99999999999887764
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.39 E-value=1.7e-12 Score=120.77 Aligned_cols=99 Identities=17% Similarity=0.049 Sum_probs=76.5
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHH
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-----------GSFLQAEADCTK 523 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~ 523 (554)
..+..+|+++..++.+|..+.+.|++++|+..|+++++++|++..+++++|.++..+ |++++|+..|++
T Consensus 30 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 109 (217)
T 2pl2_A 30 RALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD 109 (217)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH
Confidence 334456677777888888888888888888888888888888877888888888777 778888888888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 524 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++++|++..+++++|.++..+|++++|++
T Consensus 110 al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 110 AERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 888888877778888888878887777764
No 26
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=1.2e-12 Score=142.89 Aligned_cols=100 Identities=20% Similarity=0.128 Sum_probs=80.1
Q ss_pred ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
.+.++.+|+++.+++++|.++.+.|++++|+.+|+++|+++|++..+|+++|.+|.++|++++|++.|+++++++|++..
T Consensus 33 ~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~ 112 (723)
T 4gyw_A 33 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112 (723)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 33445566777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++++|.+|..+|++++|++
T Consensus 113 a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 113 AHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888888764
No 27
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=2.6e-12 Score=140.17 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=91.6
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..|+++++++++|+++.++|++++|+.+|++||+++|++..+|+++|.+|.++|++++|++.|+++++++|++..+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.+|..+|++++|++
T Consensus 84 g~~l~~~g~~~~A~~ 98 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQ 98 (723)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 999999999999975
No 28
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.35 E-value=4.6e-12 Score=116.90 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=88.2
Q ss_pred cccccccccChhhHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 008755 451 SKLSTNTFNQKQSAEIAKE----------------KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF 514 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~ 514 (554)
..+...+..+|+++..++. +|.++++.|++++|+..|+++++++|++..+++++|.+|+.+|++
T Consensus 25 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 104 (208)
T 3urz_A 25 SYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104 (208)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 3344445567888888888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (554)
Q Consensus 515 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~ 547 (554)
++|+..|+++++++|++..+++++|.+|+.+++
T Consensus 105 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999876654
No 29
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.33 E-value=5.9e-12 Score=125.43 Aligned_cols=89 Identities=21% Similarity=0.146 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
...++++|.++++.|+|++|+.+|+++|+++|++..+|+++|.+|+.+|+|++|+.+|+++++++|++..++++++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 57788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHh
Q 008755 544 MLGYYKEAI 552 (554)
Q Consensus 544 ~~~~~~~A~ 552 (554)
.++++++|.
T Consensus 276 ~~~~~~~a~ 284 (336)
T 1p5q_A 276 RIRRQLARE 284 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887763
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=2.6e-12 Score=129.95 Aligned_cols=103 Identities=11% Similarity=0.016 Sum_probs=93.2
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ-WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
..+...+..+|++..+|+.+|.++...|+ +++|+..|+++|+++|++..+|+++|.++..+|+|++|+.+|+++|+++|
T Consensus 118 ~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 118 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 34445556678999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 530 KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 530 ~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++..+|+++|.++..+|++++|++
T Consensus 198 ~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 198 KNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred cCHHHHHHHHHHHHHcCChHHHHH
Confidence 999999999999999999998875
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.33 E-value=9.7e-12 Score=115.55 Aligned_cols=100 Identities=22% Similarity=0.168 Sum_probs=85.7
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
+......+|+++..++.+|..+...|++++|+..|+++++++ +++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus 107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 334445567899999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++++|.++..+|++++|++
T Consensus 186 ~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 186 DLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999975
No 32
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.33 E-value=3.6e-12 Score=103.85 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRR 538 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~ 538 (554)
|+++..++.+|..++..|++++|+..|+++++++|++..++.++|.+++.+++|++|+..++++++++|+ +..+++++
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-CCHHHHhc
Q 008755 539 GTAREML-GYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~-~~~~~A~~ 553 (554)
|.++..+ |++++|++
T Consensus 83 ~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 83 ADALRYIEGKEVEAEI 98 (112)
T ss_dssp HHHHTTCSSCSHHHHH
T ss_pred HHHHHHHhCCHHHHHH
Confidence 9999999 99999975
No 33
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=104.03 Aligned_cols=95 Identities=36% Similarity=0.552 Sum_probs=65.9
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..+.....++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..++++++|+..++++++++|++..+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34556666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.++..+|++++|++
T Consensus 91 a~~~~~~~~~~~A~~ 105 (133)
T 2lni_A 91 AAALEAMKDYTKAMD 105 (133)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhHHHHHH
Confidence 777777777766653
No 34
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.31 E-value=2.7e-11 Score=94.94 Aligned_cols=86 Identities=34% Similarity=0.466 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
+.++..++.+|..++..|++++|+..|+++++.+|++..+++++|.++.+++++++|+..++++++++|++..+++++|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC
Q 008755 541 AREMLG 546 (554)
Q Consensus 541 ~~~~~~ 546 (554)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998764
No 35
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.31 E-value=7.9e-12 Score=129.98 Aligned_cols=92 Identities=28% Similarity=0.438 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAI 525 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al 525 (554)
++.+..++++|+.+++.|+|++|+..|+++++++|++ ..+|+++|.||+++++|++|+.+|++++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555554 3455555555555555555555555555
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 526 NLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 526 ~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
+++|++.++|+++|.+|..+|++++|+
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~ 371 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAK 371 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHH
Confidence 555555555555555555555555554
No 36
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=3e-11 Score=99.23 Aligned_cols=91 Identities=37% Similarity=0.508 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
.+..++.+|..++..|++++|+..|+++++.+|++..++.++|.++..++++++|+..++++++++|++..+++++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46778888999999999999999999999999988888999999999999999999999999999998888999999999
Q ss_pred HHcCCHHHHhc
Q 008755 543 EMLGYYKEAIE 553 (554)
Q Consensus 543 ~~~~~~~~A~~ 553 (554)
..+|++++|++
T Consensus 83 ~~~~~~~~A~~ 93 (118)
T 1elw_A 83 EFLNRFEEAKR 93 (118)
T ss_dssp HHTTCHHHHHH
T ss_pred HHHhhHHHHHH
Confidence 99999888864
No 37
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.30 E-value=1.6e-11 Score=112.10 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
..++++|.++++.|+|++|+.+|+++++++|++..+++++|.+|+.+++|++|+..|+++++++|++..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred cCCHHHH
Q 008755 545 LGYYKEA 551 (554)
Q Consensus 545 ~~~~~~A 551 (554)
+++++++
T Consensus 169 ~~~~~~~ 175 (198)
T 2fbn_A 169 LKEARKK 175 (198)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 5555443
No 38
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=8.4e-12 Score=108.70 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=87.4
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD-CTKAINLDKK 530 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-~~~al~l~p~ 530 (554)
.+...+..+|+++.+|+.+|.++.+.|++++|+..|+++++++|+++.+|+++|.+|.+++++++|... ++++++++|+
T Consensus 53 ~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 53 YICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 344445567899999999999999999999999999999999999999999999999999999887765 5999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 008755 531 NVKAYLRRGTAREMLGY 547 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~ 547 (554)
++.++..++.++..+|+
T Consensus 133 ~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999999988875
No 39
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.30 E-value=3.8e-11 Score=100.51 Aligned_cols=88 Identities=18% Similarity=0.070 Sum_probs=46.4
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.|.+...+..+|..++..|++++|+..|+++++.+|++..+++++|.++..++++++|+..++++++++|++..+++.++
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 121 (131)
T 2vyi_A 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCC
Q 008755 540 TAREMLGY 547 (554)
Q Consensus 540 ~~~~~~~~ 547 (554)
.++..+|+
T Consensus 122 ~~~~~~~~ 129 (131)
T 2vyi_A 122 IAELKLRE 129 (131)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 55555444
No 40
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.28 E-value=1.6e-11 Score=118.92 Aligned_cols=92 Identities=38% Similarity=0.512 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
.++..++.+|+.++..|+|++|+..|+++++.+|++..+|+++|.+|+++|+|++|+.+|+++++++|++..+++++|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHhc
Q 008755 542 REMLGYYKEAIE 553 (554)
Q Consensus 542 ~~~~~~~~~A~~ 553 (554)
|..+|++++|++
T Consensus 82 ~~~~g~~~~A~~ 93 (281)
T 2c2l_A 82 QLEMESYDEAIA 93 (281)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 999999999975
No 41
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.4e-11 Score=104.55 Aligned_cols=93 Identities=34% Similarity=0.455 Sum_probs=62.9
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
.+.++..++.+|..++..|+|++|+..|+++++.+|++ ..+++++|.+|+.+++|++|+..++++++++|++..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34556666666666666666666666666666666665 666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHh
Q 008755 537 RRGTAREMLGYYKEAI 552 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~ 552 (554)
++|.++..+|++++|+
T Consensus 104 ~~a~~~~~~~~~~~A~ 119 (148)
T 2dba_A 104 RRSQALEKLGRLDQAV 119 (148)
T ss_dssp HHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHcCCHHHHH
Confidence 6666666666666665
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=4.1e-11 Score=107.75 Aligned_cols=97 Identities=26% Similarity=0.216 Sum_probs=90.2
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....++....+..+|..+...+++++|+..++++++++|++..++..+|.+|.++|+|++|++.|+++++++|++..+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 145 (184)
T 3vtx_A 66 VVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ 145 (184)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
++|.+|..+|++++|++
T Consensus 146 ~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH
Confidence 99999999999999975
No 43
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.26 E-value=2.1e-11 Score=112.49 Aligned_cols=91 Identities=21% Similarity=0.187 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN----------------RAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
.++.++.+|..++..|+|++|+..|+++++++|+++.+|+. +|.+|.++|+|++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 527 LDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 527 l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++|++..+++++|.++..+|++++|++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~ 109 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALR 109 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999975
No 44
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.26 E-value=3.2e-11 Score=101.36 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHH
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRG 539 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g 539 (554)
.++.+|..++..|+|++|+..|+++++.+|++. .+++.+|.+|+++|+|++|+..|+++++++|++ ..+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 356677777777777777777777777777766 677777777777777777777777777777777 67777777
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++..+|++++|++
T Consensus 84 ~~~~~~g~~~~A~~ 97 (129)
T 2xev_A 84 LSQYGEGKNTEAQQ 97 (129)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 77777777777753
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.25 E-value=2.5e-11 Score=122.67 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=94.0
Q ss_pred ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHH
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~~ 534 (554)
.+..+|+...+|..+|.++.+.|++++|+..|+++|+++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4556789999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHhc
Q 008755 535 YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~ 553 (554)
|+++|.++..+|++++|++
T Consensus 169 ~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHccCHHHHHH
Confidence 9999999999999999875
No 46
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.24 E-value=4.5e-11 Score=102.99 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=74.0
Q ss_pred cChhhHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQW----------LKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----------SFLQA 517 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A 517 (554)
.+|++++.|+++|.++...+++ ++|+..|++||+++|++..+|+++|.+|.+++ +|++|
T Consensus 31 l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA 110 (158)
T 1zu2_A 31 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA 110 (158)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH
Confidence 4568999999999999998875 59999999999999999999999999999885 89999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Q 008755 518 EADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 518 ~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
+++|++|++++|++......+..
T Consensus 111 ~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 111 TQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999876665543
No 47
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.24 E-value=1e-10 Score=102.72 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=75.3
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.+.......|.+...++.+|..++..|++++|+..|+++++++|++..+++++|.++..+|++++|+..++++++++|++
T Consensus 35 ~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 35 FYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 33444455666777788888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHH--HHHcCCHHHHhc
Q 008755 532 VKAYLRRGTA--REMLGYYKEAIE 553 (554)
Q Consensus 532 ~~~~~~~g~~--~~~~~~~~~A~~ 553 (554)
..++..++.+ +...|++++|++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777444443 667777777764
No 48
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.24 E-value=5.3e-11 Score=99.73 Aligned_cols=92 Identities=39% Similarity=0.585 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKA 534 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~~ 534 (554)
+.+..++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+++|++|+..++++++++|++ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999887 999
Q ss_pred HHHHHHHHHHcCCHHHHhc
Q 008755 535 YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~ 553 (554)
++++|.++..+|++++|++
T Consensus 82 ~~~la~~~~~~~~~~~A~~ 100 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIH 100 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHH
Confidence 9999999999999999975
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=7.7e-11 Score=105.90 Aligned_cols=106 Identities=18% Similarity=0.108 Sum_probs=94.4
Q ss_pred hhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
.+...+...+..+|+++.+++.+|.++++.|++++|+..+++++..+|++..++..+|.++...+++++|+..+++++++
T Consensus 23 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 102 (184)
T 3vtx_A 23 GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL 102 (184)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33445566677788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 528 DKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 ~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|++..+++.+|.++..+|++++|++
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 103 NTVYADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccchHHHHHHHHHHHHhCCchhHHH
Confidence 99999999999999999999999975
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=6e-11 Score=110.72 Aligned_cols=92 Identities=21% Similarity=0.227 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
.++..++.+|..++..|+|++|+..|+++++++| .+..+++++|.+++.+|+|++|+..|+++++++|++..+++.+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4557899999999999999999999999999998 888888899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
++..+|++++|++
T Consensus 85 ~~~~~~~~~~A~~ 97 (228)
T 4i17_A 85 AYRDMKNNQEYIA 97 (228)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHcccHHHHHH
Confidence 9999999998874
No 51
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.22 E-value=3e-11 Score=107.99 Aligned_cols=94 Identities=26% Similarity=0.351 Sum_probs=90.1
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHcCCCCHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSF--LQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~l~p~~~~~~~ 536 (554)
.|.++..++.+|..++..|++++|+..|+++++++|+++.++.++|.+ ++..+++ ++|+..++++++++|++..+++
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 457788999999999999999999999999999999999999999999 8899999 9999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
++|.++..+|++++|++
T Consensus 120 ~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIE 136 (177)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcccHHHHHH
Confidence 99999999999999974
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=7.9e-11 Score=109.88 Aligned_cols=92 Identities=28% Similarity=0.256 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-------KA 534 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-------~~ 534 (554)
.+...++.+|.+++..|++++|+..|+++++.+|++..+|.++|.+|..+|++++|+..++++++++|++. .+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 119 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY 119 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred HHHHHHHHHHcCCHHHHhc
Q 008755 535 YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~ 553 (554)
++++|.++..+|++++|++
T Consensus 120 ~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHH
Confidence 9999999999999999975
No 53
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.21 E-value=7.1e-11 Score=102.73 Aligned_cols=102 Identities=12% Similarity=0.015 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA 507 (554)
Q Consensus 428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 507 (554)
..++..+..+...- ....+...+......+|.++..|+.+|.+++..|+|++|+.+|+++++++|+++.+|+++|.+
T Consensus 37 ~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKG---RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 34555555443322 222223334445566789999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 508 YLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
|.++|++++|+..|+++++++|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999864
No 54
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.21 E-value=5.8e-11 Score=104.80 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=85.0
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
..+...+...|+++..++.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|+.+|+|++|+.+|+++++++|+
T Consensus 32 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 32 DLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 33444455567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 008755 531 NVKAYLRRGTAREML 545 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~ 545 (554)
+..++++++.+....
T Consensus 112 ~~~~~~~~~l~~~~~ 126 (164)
T 3sz7_A 112 GGSDAMKRGLETTKR 126 (164)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 999888877765443
No 55
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.2e-10 Score=97.66 Aligned_cols=93 Identities=15% Similarity=0.030 Sum_probs=84.8
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD---- 528 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---- 528 (554)
+...+...|+++..++.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++
T Consensus 27 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (126)
T 3upv_A 27 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC
Confidence 3344455678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHHHc
Q 008755 529 --KKNVKAYLRRGTAREML 545 (554)
Q Consensus 529 --p~~~~~~~~~g~~~~~~ 545 (554)
|++..++..+..+...+
T Consensus 107 ~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 107 NGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TTTTHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHhh
Confidence 99999999888887653
No 56
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.20 E-value=9.6e-11 Score=116.60 Aligned_cols=97 Identities=25% Similarity=0.329 Sum_probs=92.2
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADC 521 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~ 521 (554)
....|+.+..++.+|+.+++.|+|++|+..|+++++++|++ ..+|+++|.+|+++++|++|+.+|
T Consensus 140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33457889999999999999999999999999999999998 699999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 522 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++++++|++..+++++|.+|..+|++++|++
T Consensus 220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 251 (336)
T 1p5q_A 220 NKALELDSNNEKGLSRRGEAHLAVNDFELARA 251 (336)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999975
No 57
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.19 E-value=2.2e-11 Score=121.41 Aligned_cols=97 Identities=27% Similarity=0.367 Sum_probs=81.6
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----------------TYYSNRAAAYLESGSFLQAEA 519 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~ 519 (554)
....++.+..++.+|+.+++.|+|++|+..|+++++++|++. .+|+++|.||+++++|++|+.
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344456777888888888888888888888888888888776 388888888888888888888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 520 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|+++++++|++..+++++|.+|..+|++++|++
T Consensus 252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888888888888888888864
No 58
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.18 E-value=3.4e-10 Score=93.71 Aligned_cols=85 Identities=32% Similarity=0.452 Sum_probs=45.8
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.|.+...++.+|..++..|++++|+..|+++++.+|.+..++.++|.+|..++++++|+..++++++++|++..+++.++
T Consensus 39 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 008755 540 TAREM 544 (554)
Q Consensus 540 ~~~~~ 544 (554)
.++..
T Consensus 119 ~~~~~ 123 (125)
T 1na0_A 119 NAKQK 123 (125)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 59
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.17 E-value=5.5e-11 Score=119.87 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=88.8
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..+.+...++++|.++++.|+|++|+.+|+++|+++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
+.++..+++++++.+
T Consensus 348 ~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888754
No 60
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=3.2e-10 Score=104.29 Aligned_cols=91 Identities=19% Similarity=0.110 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---------- 532 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---------- 532 (554)
++..++.+|..++..|++++|+..|+++++++|++..+++++|.+|+.+|+|++|+..|++++++.|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 5679999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred ------HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 ------KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ------~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++++|.++..+|++++|++
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999975
No 61
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.17 E-value=8.4e-11 Score=101.14 Aligned_cols=98 Identities=15% Similarity=0.047 Sum_probs=85.9
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.+......+|.++..|+.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus 40 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 40 IFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34444556788999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHH
Q 008755 532 VKAYLRRGTAREMLGYYK 549 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~ 549 (554)
+.....+..+...++..+
T Consensus 120 ~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 120 PAHEALAARAGAMLEAVT 137 (142)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 877776666665555444
No 62
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.16 E-value=7.8e-11 Score=102.25 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=79.6
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.+......+|.++..|+.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus 43 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 43 VFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 33444556788999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 008755 532 VKAYLRRGTAR 542 (554)
Q Consensus 532 ~~~~~~~g~~~ 542 (554)
+.....+..+.
T Consensus 123 ~~~~~~~~~~~ 133 (148)
T 2vgx_A 123 PEFXELSTRVS 133 (148)
T ss_dssp GGGHHHHHHHH
T ss_pred CcchHHHHHHH
Confidence 76644444433
No 63
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-10 Score=97.19 Aligned_cols=91 Identities=18% Similarity=0.075 Sum_probs=85.8
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....|.+...++.+|..++..|++++|+..|+++++.+|++..+++++|.+++.++++++|+..++++++++|++..+++
T Consensus 43 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 122 (133)
T 2lni_A 43 IKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122 (133)
T ss_dssp HTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q 008755 537 RRGTAREMLGY 547 (554)
Q Consensus 537 ~~g~~~~~~~~ 547 (554)
.++.++..+++
T Consensus 123 ~l~~~~~~~~~ 133 (133)
T 2lni_A 123 GYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcC
Confidence 99999988764
No 64
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=9.8e-11 Score=103.10 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=82.9
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRR 538 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~ 538 (554)
.|.....++++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++. .....+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999999999999998 667777
Q ss_pred HHHHHHcCCHHH
Q 008755 539 GTAREMLGYYKE 550 (554)
Q Consensus 539 g~~~~~~~~~~~ 550 (554)
..+...++++++
T Consensus 139 ~~~~~~~~~~~~ 150 (162)
T 3rkv_A 139 KIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 877776655543
No 65
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=4.4e-11 Score=130.69 Aligned_cols=101 Identities=13% Similarity=-0.012 Sum_probs=91.7
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.+......+|+++.+|+.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|.++|+|++ ++.|+++++++|++
T Consensus 455 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 455 KLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred HHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence 34444555678899999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++++|.+|..+|++++|++
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999975
No 66
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.16 E-value=2.9e-10 Score=95.02 Aligned_cols=96 Identities=40% Similarity=0.537 Sum_probs=91.7
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
...+.++..++.+|..++..|++++|+..|+++++.+|++..++.++|.++..++++++|+..++++++++|++..+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|.++..+|++++|++
T Consensus 86 ~~~~~~~~~~~~~A~~ 101 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVA 101 (131)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHH
Confidence 9999999999999974
No 67
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.16 E-value=2.7e-10 Score=99.93 Aligned_cols=93 Identities=42% Similarity=0.659 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
.+.+..++.+|..++..|++++|+..|+++++.+|++..+++++|.++..+++|++|+..++++++++|++..+++++|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
++..+|++++|++
T Consensus 90 ~~~~~~~~~~A~~ 102 (166)
T 1a17_A 90 SNMALGKFRAALR 102 (166)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHhccHHHHHH
Confidence 9999999999974
No 68
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.15 E-value=2.4e-11 Score=100.72 Aligned_cols=91 Identities=15% Similarity=0.011 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.|++...++.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..++++++++|++........
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred HHHHHcCCHHH
Q 008755 540 TAREMLGYYKE 550 (554)
Q Consensus 540 ~~~~~~~~~~~ 550 (554)
.+....+.+++
T Consensus 103 ai~~~~~~l~~ 113 (117)
T 3k9i_A 103 AILFYADKLDE 113 (117)
T ss_dssp HHHHHTTCTTC
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 69
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.15 E-value=2.3e-10 Score=94.71 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=71.1
Q ss_pred HccCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 476 KDKQWLKAISFYTEAIKL---NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 476 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
..|++++|+..|++++++ +|++..+++++|.+|+.+|+|++|+..++++++++|++..+++++|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 008755 553 E 553 (554)
Q Consensus 553 ~ 553 (554)
+
T Consensus 82 ~ 82 (117)
T 3k9i_A 82 E 82 (117)
T ss_dssp H
T ss_pred H
Confidence 5
No 70
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.14 E-value=5.3e-11 Score=102.58 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=72.8
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF----------LQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 475 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
-+.++|++|+..|+++++++|+++++|+++|.++.+++++ ++|+..|++||+++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHhc
Q 008755 545 LG-----------YYKEAIE 553 (554)
Q Consensus 545 ~~-----------~~~~A~~ 553 (554)
+| ++++|++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~ 112 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQ 112 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHH
Confidence 85 7888874
No 71
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.14 E-value=2.2e-10 Score=92.08 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=77.3
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLR 537 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~ 537 (554)
+|+++..++.+|..++..|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|++++++.|+ +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999774 5566666
Q ss_pred HHHHHHHcCC
Q 008755 538 RGTAREMLGY 547 (554)
Q Consensus 538 ~g~~~~~~~~ 547 (554)
+...+...+.
T Consensus 83 l~~~l~~~~~ 92 (100)
T 3ma5_A 83 LQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHccc
Confidence 6666665544
No 72
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.4e-09 Score=102.61 Aligned_cols=95 Identities=40% Similarity=0.547 Sum_probs=92.0
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..|.+...+..+|..++..|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++..+++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.++..+|++++|++
T Consensus 214 ~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 214 ATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhHHHHHH
Confidence 999999999999975
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=1.2e-09 Score=97.16 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=51.2
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.|.+...++.+|..++..|++++|+..|+++++.+|++..++.++|.++...+++++|+..++++++++|++..+++.+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 117 (186)
T 3as5_A 38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117 (186)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHh
Q 008755 540 TAREMLGYYKEAI 552 (554)
Q Consensus 540 ~~~~~~~~~~~A~ 552 (554)
.++..+|++++|+
T Consensus 118 ~~~~~~~~~~~A~ 130 (186)
T 3as5_A 118 VALDNLGRFDEAI 130 (186)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHcCcHHHHH
Confidence 5555555555553
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.12 E-value=8.6e-10 Score=105.39 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=90.1
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.+.++..++.+|..++..|++++|+..|+++++++|++..+|.++|.+|..+|++++|+..|+++++++|++..+++.+|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++..+|++++|++
T Consensus 119 ~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 119 IALYYGGRDKLAQD 132 (275)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHhccHHHHHH
Confidence 99999999999974
No 75
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.09 E-value=4.4e-10 Score=113.20 Aligned_cols=89 Identities=29% Similarity=0.423 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIK----------------LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 528 (554)
..++.+|+.+++.|+|++|+..|+++++ ++|.+..+|+++|.+|+++++|++|+.+|+++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4688899999999999999999999999 788889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 529 KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 529 p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|++.++++++|.+|..+|++++|++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~ 328 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALA 328 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999999999975
No 76
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=8.7e-10 Score=92.37 Aligned_cols=94 Identities=33% Similarity=0.472 Sum_probs=89.5
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.+.+...++.+|..+...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++++|++..+++.++
T Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 110 (136)
T 2fo7_A 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110 (136)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++...|++++|++
T Consensus 111 ~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 111 NAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHTTTCHHHHHH
T ss_pred HHHHHHccHHHHHH
Confidence 99999999999864
No 77
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.09 E-value=2.2e-10 Score=119.04 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
...|+++|.++++.|+|++|+.+|+++|+++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++++++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHh
Q 008755 544 MLGYYKEAI 552 (554)
Q Consensus 544 ~~~~~~~A~ 552 (554)
.+++++++.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 78
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=4e-10 Score=120.57 Aligned_cols=123 Identities=12% Similarity=-0.018 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA 507 (554)
Q Consensus 428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 507 (554)
..+..++..+... .....+...+.......|++...++.+|..+...|++++|+..|+++++++|++..+++++|.+
T Consensus 24 ~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 100 (568)
T 2vsy_A 24 VAWLMLADAELGM---GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100 (568)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4444444444332 2223333445555667788899999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHhc
Q 008755 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML---GYYKEAIE 553 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~---~~~~~A~~ 553 (554)
|.++|++++|++.|+++++++|++..++++++.++..+ |++++|++
T Consensus 101 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 99999999999999999999999999999999999999 99998874
No 79
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.09 E-value=4.5e-10 Score=102.38 Aligned_cols=101 Identities=30% Similarity=0.370 Sum_probs=93.2
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcCCHHH
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRAAAYLESGSFLQ 516 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~ 516 (554)
+.......++.+..++.+|+.++..|+|++|+..|++++++.|+++ .+++++|.+|+++++|++
T Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 106 (198)
T 2fbn_A 27 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPK 106 (198)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3344445567888999999999999999999999999999999887 899999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 517 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|+.+|+++++++|++..+++++|.+|..+|++++|++
T Consensus 107 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 107 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999999999999999999999999975
No 80
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.09 E-value=3.7e-10 Score=97.53 Aligned_cols=79 Identities=13% Similarity=0.052 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------cCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYY----SNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
|.++..|.++|.++.+.|+|++|+.+|+++|++ +|++..+| +++|.++..+|+|++|+.+|+++++++|
T Consensus 54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 346679999999999999999999999999999 99999999 9999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 008755 530 KNVKAYLRRG 539 (554)
Q Consensus 530 ~~~~~~~~~g 539 (554)
++...+-.+.
T Consensus 134 ~d~~~~~~~~ 143 (159)
T 2hr2_A 134 ERKGETPGKE 143 (159)
T ss_dssp HCCSCCTTHH
T ss_pred CcHHHHHHHH
Confidence 8755443333
No 81
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.08 E-value=1.8e-10 Score=96.16 Aligned_cols=81 Identities=11% Similarity=-0.036 Sum_probs=69.4
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
+...+..+|+++..|+.+|.++...|++++|+..|+++++++|++..+++++|.+|..+|++++|+..++++++++|++.
T Consensus 40 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 40 FEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 34445567889999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred H
Q 008755 533 K 533 (554)
Q Consensus 533 ~ 533 (554)
.
T Consensus 120 ~ 120 (121)
T 1hxi_A 120 Q 120 (121)
T ss_dssp -
T ss_pred C
Confidence 4
No 82
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.06 E-value=1.2e-10 Score=121.73 Aligned_cols=104 Identities=17% Similarity=0.120 Sum_probs=88.8
Q ss_pred hcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
...+.......|+++..++++|.++++.|+|++|+..|+++++++|++..+|+++|.+|..+|+|++|++.|+++++++|
T Consensus 26 ~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 26 IKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445556667888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH--HHHcCCHHHHhc
Q 008755 530 KNVKAYLRRGTA--REMLGYYKEAIE 553 (554)
Q Consensus 530 ~~~~~~~~~g~~--~~~~~~~~~A~~ 553 (554)
++..++++++.+ +..+|++++|++
T Consensus 106 ~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 106 HDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998888888888 788888888865
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=1.5e-09 Score=96.66 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=90.5
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.|.+...+..+|..++..|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|++..+++.+|
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++..+|++++|++
T Consensus 152 ~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 152 FSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 99999999999974
No 84
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.05 E-value=1.7e-09 Score=89.34 Aligned_cols=91 Identities=37% Similarity=0.508 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
....++.+|..++..|++++|+..|+++++.+|++..++..+|.++...+++++|+..++++++++|++...++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHhc
Q 008755 543 EMLGYYKEAIE 553 (554)
Q Consensus 543 ~~~~~~~~A~~ 553 (554)
...|++++|++
T Consensus 88 ~~~~~~~~A~~ 98 (125)
T 1na0_A 88 YKQGDYDEAIE 98 (125)
T ss_dssp HHTTCHHHHHH
T ss_pred HHhcCHHHHHH
Confidence 99999999874
No 85
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.05 E-value=1.2e-09 Score=102.38 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=68.2
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....|.+...+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|++..+++
T Consensus 84 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 163 (243)
T 2q7f_A 84 LELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF 163 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH
Confidence 34455566667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
.+|.++...|++++|++
T Consensus 164 ~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 77777777777776653
No 86
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.05 E-value=1.7e-09 Score=108.29 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
++..++.+|..+...|++++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|++..+++++|.+|
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHhc
Q 008755 543 EMLGYYKEAIE 553 (554)
Q Consensus 543 ~~~~~~~~A~~ 553 (554)
..+|++++|++
T Consensus 292 ~~~g~~~~A~~ 302 (365)
T 4eqf_A 292 INLGAYREAVS 302 (365)
T ss_dssp HHHTCCHHHHH
T ss_pred HHCCCHHHHHH
Confidence 99999999975
No 87
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.04 E-value=1.9e-09 Score=99.43 Aligned_cols=102 Identities=14% Similarity=0.007 Sum_probs=85.3
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--cC
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAIN--LD 528 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--l~ 528 (554)
.+.......|++...+..+|..+...|++++|+..|+++++.+|++..++.++|.++... |++++|+..++++++ .+
T Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (225)
T 2vq2_A 30 SIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109 (225)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC
Confidence 344445556777888888899998899999999999999998888888888899999888 899999999999888 66
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 529 KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 529 p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|.+..+++.+|.++..+|++++|++
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 110 PTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6678888889999999999888864
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=2.3e-10 Score=124.98 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=90.3
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
..+|++...++.+|..+++.|+|++|+..|+++++++|++..+|+++|.+|+++|+|++|++.|+++++++|++..++++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|.++..+|++++ ++
T Consensus 507 lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 507 LAATAELAGNTDE-HK 521 (681)
T ss_dssp HHHHHHHHTCCCT-TC
T ss_pred HHHHHHHcCChHH-HH
Confidence 9999999999877 53
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=1.5e-09 Score=116.04 Aligned_cols=100 Identities=10% Similarity=-0.057 Sum_probs=90.2
Q ss_pred ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
......+|++...++.+|..+++.|++++|+..|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..
T Consensus 13 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 92 (568)
T 2vsy_A 13 RAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG 92 (568)
T ss_dssp --------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 33445567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++++|.+|..+|++++|++
T Consensus 93 ~~~~la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 93 IALWLGHALEDAGQAEAAAA 112 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999975
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=1.6e-09 Score=103.32 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhh---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HH
Q 008755 426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQS---AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---AT 499 (554)
Q Consensus 426 ~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 499 (554)
....++..+..+...-.... +...+...+...|.+ ..+++.+|.++++.|+|++|+..|+++++.+|++ ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~---A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDR---AIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHH---HHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44556666665543322222 222233333334444 8999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHhc
Q 008755 500 YYSNRAAAYLE--------SGSFLQAEADCTKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 500 ~~~~~a~~~~~--------~~~~~~A~~~~~~al~l~p~~~~~~-----------------~~~g~~~~~~~~~~~A~~ 553 (554)
+++.+|.+++. +|++++|+..|+++++++|++..+. +.+|.+|..+|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 89999999999 9999999999999999999986665 889999999999999975
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=8.9e-10 Score=105.10 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=88.3
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---H
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---V 532 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~ 532 (554)
..+.++..++.+|..+++.|+|++|+..|+++++.+|++ ..+++.+|.+|+++|+|++|+..|+++++++|++ .
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 346778999999999999999999999999999999999 8999999999999999999999999999998854 6
Q ss_pred HHHHHHHHHHHH--------cCCHHHHhc
Q 008755 533 KAYLRRGTAREM--------LGYYKEAIE 553 (554)
Q Consensus 533 ~~~~~~g~~~~~--------~~~~~~A~~ 553 (554)
.+++.+|.++.. +|++++|++
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~ 118 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIE 118 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHH
Confidence 789999999999 999999975
No 92
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.03 E-value=1.2e-09 Score=109.45 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
+.+...++.+|..+++.|++++|+..|+++++.+|++..+|+++|.+|..+|++++|+..|+++++++|++..+++.+|.
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
+|..+|++++|++
T Consensus 142 ~~~~~g~~~~A~~ 154 (365)
T 4eqf_A 142 SYTNTSHQQDACE 154 (365)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHccccHHHHHH
Confidence 9999999999975
No 93
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.02 E-value=5.4e-10 Score=116.72 Aligned_cols=95 Identities=22% Similarity=0.119 Sum_probs=91.2
Q ss_pred cChhhHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 459 NQKQSAEIAKEKGNQAYKD--------KQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..|++...|+.+|..++.. |++++|+..|+++++++| +++.+|+++|.+|..+|+|++|+..|++++++
T Consensus 208 ~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 208 MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999 999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 528 DKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 ~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|++..++++++.++..+|++++|++
T Consensus 288 ~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 288 DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999974
No 94
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.01 E-value=3.2e-09 Score=86.78 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=80.1
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
...|.+...++.+|..++..|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|++..++..
T Consensus 32 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 32 KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 008755 538 RGTAR 542 (554)
Q Consensus 538 ~g~~~ 542 (554)
++.+.
T Consensus 112 l~~~~ 116 (118)
T 1elw_A 112 LQNME 116 (118)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88775
No 95
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.01 E-value=2.5e-09 Score=85.26 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=71.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHH
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY--LRRGTARE 543 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~--~~~g~~~~ 543 (554)
.+.+|..++..|+|++|+..|+++++.+|++.. +++++|.+|+.+|++++|+..|+++++++|++..++ ..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 999999999999999999999999999999999988 44555554
Q ss_pred HcC
Q 008755 544 MLG 546 (554)
Q Consensus 544 ~~~ 546 (554)
...
T Consensus 83 ~~~ 85 (99)
T 2kc7_A 83 FYN 85 (99)
T ss_dssp HHC
T ss_pred HHH
Confidence 433
No 96
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.01 E-value=2e-09 Score=107.69 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
++..+..+|..+...|++++|+..|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..+++++|.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHhc
Q 008755 543 EMLGYYKEAIE 553 (554)
Q Consensus 543 ~~~~~~~~A~~ 553 (554)
..+|++++|++
T Consensus 296 ~~~g~~~~A~~ 306 (368)
T 1fch_A 296 INLGAHREAVE 306 (368)
T ss_dssp HHHTCHHHHHH
T ss_pred HHCCCHHHHHH
Confidence 99999999974
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=3.6e-09 Score=88.50 Aligned_cols=89 Identities=33% Similarity=0.474 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
..++.+|..++..|++++|+..|+++++.+|++..+++.++.++...+++++|+..++++++++|++...++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHhc
Q 008755 545 LGYYKEAIE 553 (554)
Q Consensus 545 ~~~~~~A~~ 553 (554)
.|++++|++
T Consensus 82 ~~~~~~A~~ 90 (136)
T 2fo7_A 82 QGDYDEAIE 90 (136)
T ss_dssp TTCHHHHHH
T ss_pred hcCHHHHHH
Confidence 999999874
No 98
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.00 E-value=9.5e-10 Score=114.76 Aligned_cols=93 Identities=42% Similarity=0.659 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
++.+..++.+|+.+++.|+|++|+..|+++++++|++..+|+++|.+|+++++|++|+++|+++++++|++..+++++|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
+|..+|++++|++
T Consensus 83 ~~~~~g~~~eA~~ 95 (477)
T 1wao_1 83 SNMALGKFRAALR 95 (477)
T ss_dssp HHHHHTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 9999999999975
No 99
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.00 E-value=8.9e-10 Score=93.44 Aligned_cols=95 Identities=18% Similarity=0.028 Sum_probs=84.3
Q ss_pred ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----- 530 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----- 530 (554)
.....|.+...++.+|.+++..|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|+++++++|+
T Consensus 35 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 114 (137)
T 3q49_B 35 AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114 (137)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHH
Confidence 344467788999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCHHH
Q 008755 531 NVKAYLRRGTAREMLGYYKE 550 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~ 550 (554)
+......+..+.......++
T Consensus 115 ~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 115 GDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777766655444
No 100
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.00 E-value=1.1e-09 Score=90.15 Aligned_cols=91 Identities=8% Similarity=0.032 Sum_probs=80.0
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYL 536 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~ 536 (554)
..|+++..++.+|..++..|++++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|+ +.....
T Consensus 14 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (115)
T 2kat_A 14 QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93 (115)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999999999884 556666
Q ss_pred HHHHHHHHcCCHH
Q 008755 537 RRGTAREMLGYYK 549 (554)
Q Consensus 537 ~~g~~~~~~~~~~ 549 (554)
.+...+..+++..
T Consensus 94 ~l~~~l~~l~~~~ 106 (115)
T 2kat_A 94 ELQVFLRRLARED 106 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc
Confidence 6666666665443
No 101
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.00 E-value=9e-10 Score=115.02 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=89.4
Q ss_pred cChhhHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES--------GSFLQAEADC 521 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~ 521 (554)
..|+ ...+..+|..+... |++++|+..|+++++++|++..+|+++|.+|..+ ++|++|+..|
T Consensus 166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~ 244 (474)
T 4abn_A 166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244 (474)
T ss_dssp TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 3455 58999999999999 9999999999999999999999999999999999 9999999999
Q ss_pred HHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 522 TKAINLDK---KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 522 ~~al~l~p---~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++++++| +++.+++++|.+|..+|++++|++
T Consensus 245 ~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp HHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999 999999999999999999999975
No 102
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.98 E-value=3.2e-09 Score=109.42 Aligned_cols=99 Identities=27% Similarity=0.266 Sum_probs=88.4
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
.....+|.++..++.+|..+++.|++++|+..|+++++.+|++..+++.+|.+|+.+|++++|+..++++++++|++..+
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 96 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA 96 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 33455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHhc
Q 008755 535 YLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~~ 553 (554)
++.+|.+|..+|++++|++
T Consensus 97 ~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999874
No 103
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.98 E-value=3.2e-09 Score=99.30 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=89.4
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
+.......|.+...+..+|..++..|++++|+..|+++++.+|++..++..+|.+++..|++++|+..++++++++|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (243)
T 2q7f_A 114 FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193 (243)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 33344455677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++.+|.++..+|++++|++
T Consensus 194 ~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 194 DAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999998864
No 104
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.97 E-value=3.6e-09 Score=99.83 Aligned_cols=105 Identities=16% Similarity=0.056 Sum_probs=95.8
Q ss_pred hhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 008755 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN-- 526 (554)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-- 526 (554)
+...+.......|.+...++.+|..+...|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 135 (252)
T 2ho1_A 56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135 (252)
T ss_dssp GHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc
Confidence 334444555667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 527 LDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 527 l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+|.+..+++.+|.++..+|++++|++
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999999999999999999999975
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=3.3e-09 Score=97.44 Aligned_cols=89 Identities=25% Similarity=0.272 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
.+...++.+|..++..|+|++|+..|++++ +| ++.+++++|.+|..+|+|++|+..|+++++++|++..+++++|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 456778999999999999999999999996 44 789999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHhc
Q 008755 542 REMLGYYKEAIE 553 (554)
Q Consensus 542 ~~~~~~~~~A~~ 553 (554)
+..+|++++|++
T Consensus 81 ~~~~~~~~~A~~ 92 (213)
T 1hh8_A 81 YYQTEKYDLAIK 92 (213)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcccHHHHHH
Confidence 999999999975
No 106
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.96 E-value=2.1e-09 Score=108.73 Aligned_cols=96 Identities=24% Similarity=0.199 Sum_probs=71.7
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
..+|.++..++.+|..+.+.|++++|+..|+++++++|++..+|.++|.++.+.|++++|+..|+++++++|++..++..
T Consensus 61 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 140 (388)
T 1w3b_A 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|.++..+|++++|++
T Consensus 141 l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHTTSCHHHHHH
T ss_pred HHHHHHHccCHHHHHH
Confidence 7777777777777653
No 107
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.96 E-value=4.4e-09 Score=104.29 Aligned_cols=91 Identities=29% Similarity=0.279 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
+++.++.+|..++..|+|++|+..|+++++.+|++..+++++|.+++.+|++++|+..++++++++|++..+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHhc
Q 008755 543 EMLGYYKEAIE 553 (554)
Q Consensus 543 ~~~~~~~~A~~ 553 (554)
..+|++++|++
T Consensus 82 ~~~~~~~~A~~ 92 (359)
T 3ieg_A 82 LKQGKLDEAED 92 (359)
T ss_dssp HHHTCHHHHHH
T ss_pred HHcCChHHHHH
Confidence 99999999874
No 108
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.96 E-value=1e-08 Score=85.74 Aligned_cols=85 Identities=8% Similarity=-0.003 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
....++.+|.+++..|+|++|+..|+++++.+|++ +.+++++|.+|+.+|++++|+..++++++.+|++..+...+.
T Consensus 38 ~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 38 TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 34799999999999999999999999999999999 899999999999999999999999999999999998877776
Q ss_pred HHHHHcCC
Q 008755 540 TAREMLGY 547 (554)
Q Consensus 540 ~~~~~~~~ 547 (554)
.+....++
T Consensus 118 ~l~~l~~~ 125 (129)
T 2xev_A 118 RLQSIRLG 125 (129)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 66555444
No 109
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.96 E-value=1.6e-09 Score=114.47 Aligned_cols=94 Identities=33% Similarity=0.537 Sum_probs=89.5
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
..+.+..++.+|..+++.|+|++|+..|+++++.+|+++.+|+++|.+|+++|+|++|+..|+++++++|++..+++.+|
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++..+|++++|++
T Consensus 101 ~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 101 SANESLGNFTDAMF 114 (537)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 99999999999974
No 110
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=6.8e-09 Score=88.89 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
...++.+|..++..|+|++|+..|+++++++|++..+++++|.+|+.++++++|+..++++++++|++..++..++.+..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999988887654
No 111
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.95 E-value=1.4e-08 Score=95.71 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=91.2
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..+.+...+..+|..++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..++++++++|++..+++.+
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 215 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
+.++..+|++++|++
T Consensus 216 ~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 216 IRLAKVFEDRDTAAS 230 (252)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHccCHHHHHH
Confidence 999999999999864
No 112
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.95 E-value=2.9e-09 Score=87.55 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 481 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++|+..|+++++.+|++..+++++|.+|+.+|+|++|+..|+++++++|++..+++++|.+|..+|++++|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999974
No 113
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.94 E-value=6.1e-09 Score=95.90 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=90.2
Q ss_pred cccccccChhhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
+.......|.+...+..+|..++.. |++++|+..|+++++ .+|.+..++.++|.++...|++++|+..++++++++|
T Consensus 65 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 144 (225)
T 2vq2_A 65 FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144 (225)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444455677888999999999999 999999999999999 6677789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 530 KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 530 ~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++..+++.+|.++..+|++++|++
T Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 145 QFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999874
No 114
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=3.1e-09 Score=107.52 Aligned_cols=96 Identities=21% Similarity=0.233 Sum_probs=91.9
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
...|++...+..+|..+++.|++++|+..++++++.+|.+..+|+.+|.+|.+.|++++|+..|+++++++|++..++++
T Consensus 27 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (388)
T 1w3b_A 27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 106 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|.++...|++++|++
T Consensus 107 l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HHHHHHHHSCSSHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 9999999999999874
No 115
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.93 E-value=5.6e-09 Score=102.25 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
|.+...+..+|..+...|++++|+..|+++++.+|++..++.++|.++...|++++|+..++++++++|++..+++.+|.
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
++..+|++++|++
T Consensus 249 ~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 249 SYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHhccHHHHHH
Confidence 9999999999974
No 116
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.93 E-value=1.3e-09 Score=104.19 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
++...++.+|..++..|++++|+..|+++++ .|.+ ..+|.++|.+|..+|++++|+..++++++++|++..+++.
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 113 (272)
T 3u4t_A 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ 113 (272)
T ss_dssp CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3444455555555555555555555555555 2221 2235555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHh
Q 008755 538 RGTAREMLGYYKEAI 552 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~ 552 (554)
+|.++..+|++++|+
T Consensus 114 l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 114 IGSYFYNKGNFPLAI 128 (272)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHccCHHHHH
Confidence 555555555555554
No 117
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.93 E-value=5.7e-09 Score=109.27 Aligned_cols=92 Identities=34% Similarity=0.533 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~ 540 (554)
.+.++.++.+|+.+++.|+|++|+..|+++++.+| +..+|.++|.+|+++|+|++|+..++++++++|++..+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35788999999999999999999999999999999 58999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHhc
Q 008755 541 AREMLGYYKEAIE 553 (554)
Q Consensus 541 ~~~~~~~~~~A~~ 553 (554)
++..+|++++|++
T Consensus 82 ~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 82 ANEGLGKFADAMF 94 (514)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHHhhHHHHHH
Confidence 9999999999974
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=2.4e-09 Score=95.51 Aligned_cols=71 Identities=11% Similarity=-0.017 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHhc
Q 008755 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 483 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|+..|+++++.+|++..+++++|.++..+|++++|+..|+++++++|++ ..++++++.++..+|++++|+.
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 3444555566677777778888888888888888888888888887765 5577788888888887777753
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=5.7e-09 Score=97.21 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHH------------------cCCHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLE------------------SGSFLQAEA 519 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~ 519 (554)
+....+++.+|.++++.|+|++|+..|+++++.+|++.. +++.+|.++++ ++++++|+.
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 344678999999999999999999999999999999864 78999999987 568999999
Q ss_pred HHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHhc
Q 008755 520 DCTKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 520 ~~~~al~l~p~~~~~~-----------------~~~g~~~~~~~~~~~A~~ 553 (554)
.|+++++.+|++..+. +.+|.+|...|++++|+.
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 168 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN 168 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9999999999987554 678899999999999874
No 120
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.90 E-value=6.5e-09 Score=97.98 Aligned_cols=92 Identities=35% Similarity=0.498 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VK 533 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~ 533 (554)
+..++.++.+|..++..|+|++|+..|+++++.+ ++..++.++|.+|..+|++++|+..++++++++|++ ..
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3578899999999999999999999999999999 999999999999999999999999999999999977 79
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++.+|.++..+|++++|++
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~ 100 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIE 100 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHH
Confidence 99999999999999999974
No 121
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.90 E-value=4.1e-09 Score=105.34 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=91.3
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----- 531 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----- 531 (554)
....|+++..++.+|..+...|++++|+..|+++++++|++..+++++|.+|.++|++++|+..|+++++++|++
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 334567889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ------VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ------~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++.+|.++..+|++++|.+
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 8999999999999999998864
No 122
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.90 E-value=5.8e-09 Score=101.38 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=74.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008755 472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A 551 (554)
+.+...|++++|+..|+++++.+|+++.+++++|.++.++|++++|+..++++++++|+++.+++++|.++..+|+++++
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 33445689999999999999999999999999999999999999999999999999999999999999999999998764
No 123
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.90 E-value=7.4e-09 Score=98.79 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
...+..+|..+...|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++..+++++|...+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 66788899999999999999999999999999999999999999999999999999999999999999999999994455
Q ss_pred HcCCHHHHhc
Q 008755 544 MLGYYKEAIE 553 (554)
Q Consensus 544 ~~~~~~~A~~ 553 (554)
..+++++|++
T Consensus 154 ~~~~~~~A~~ 163 (272)
T 3u4t_A 154 YNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5568888864
No 124
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.89 E-value=8.3e-09 Score=86.70 Aligned_cols=84 Identities=10% Similarity=0.134 Sum_probs=72.6
Q ss_pred ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
.+...+..+|+++..+.++|.++++.|+|++|+..|+++|+++|++ ..+|.++|.++..+++|++|++.|+++
T Consensus 30 ~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 30 HYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455577899999999999999999999999999999998875 358999999999999999999999999
Q ss_pred HHcCCCCHHHHH
Q 008755 525 INLDKKNVKAYL 536 (554)
Q Consensus 525 l~l~p~~~~~~~ 536 (554)
++++|+ ++...
T Consensus 110 l~~~~~-~~~~~ 120 (127)
T 4gcn_A 110 LSEFRD-PELVK 120 (127)
T ss_dssp HHHSCC-HHHHH
T ss_pred HhhCcC-HHHHH
Confidence 999885 44433
No 125
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.89 E-value=9.1e-09 Score=100.84 Aligned_cols=97 Identities=15% Similarity=0.027 Sum_probs=91.7
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....|.+...+..+|..+...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..++++++++|++..+++
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 197 (330)
T 3hym_B 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH 197 (330)
T ss_dssp HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHH
Confidence 33456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
.+|.++..+|++++|++
T Consensus 198 ~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 198 EVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcccHHHHHH
Confidence 99999999999999974
No 126
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.88 E-value=8.3e-09 Score=101.01 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=91.2
Q ss_pred ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------
Q 008755 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK------- 530 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------- 530 (554)
...|++...+..+|..+...|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|+
T Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 200 ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 3456778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 -----NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 -----~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+..+++.++.++..+|++++|.+
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 79999999999999999999864
No 127
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.88 E-value=7.3e-09 Score=101.55 Aligned_cols=95 Identities=15% Similarity=-0.035 Sum_probs=90.2
Q ss_pred cChhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
..|.++..++.+|..++..| ++++|+..|+++++.+|++..+|..+|.++..+|++++|+..++++++++|++..+++.
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 45677889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHhc
Q 008755 538 RGTAREMLGYYKEAIE 553 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~~ 553 (554)
+|.++..+|++++|++
T Consensus 165 l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 165 IGLEYGLTNNSKLAER 180 (330)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhHHHHHH
Confidence 9999999999999874
No 128
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=2.4e-09 Score=103.94 Aligned_cols=100 Identities=13% Similarity=-0.042 Sum_probs=69.3
Q ss_pred cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHH----------------------------------HHHHhcCCCH
Q 008755 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT----------------------------------EAIKLNGNNA 498 (554)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~----------------------------------~al~~~p~~~ 498 (554)
+......+|+++.+++.+|..+...|++++|+..|+ ++++.+|++.
T Consensus 140 ~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~ 219 (287)
T 3qou_A 140 LXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDA 219 (287)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccH
Confidence 334445566777777777777777777777654444 4455677777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHh
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~g~~~~~~~~~~~A~ 552 (554)
.+++++|.+|...|++++|+..|+++++++|++ ..++.+++.++..+|+.++|+
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 777777777777777777777777777777776 667777777777777766664
No 129
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=1.4e-08 Score=94.56 Aligned_cols=91 Identities=13% Similarity=0.042 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHH------------------ccCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHH
Q 008755 463 SAEIAKEKGNQAYK------------------DKQWLKAISFYTEAIKLNGNNATYY-----------------SNRAAA 507 (554)
Q Consensus 463 ~~~~~~~~g~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~~a~~ 507 (554)
...+++.+|.+++. .|++++|+..|+++++.+|++..++ ..+|.+
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~ 156 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEY 156 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889988876 5799999999999999999986554 578999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHhc
Q 008755 508 YLESGSFLQAEADCTKAINLDKKNV---KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|++.|+|++|+..|+++++..|+++ ++++.+|.++..+|++++|++
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999999999986 689999999999999999974
No 130
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=1.4e-08 Score=98.49 Aligned_cols=76 Identities=8% Similarity=0.024 Sum_probs=70.2
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
..+......+|++...++++|..+...|++++|+..|+++++.+|++ ..++.+++.++..+|+.++|+..|++++.
T Consensus 206 ~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 206 QQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 34455567789999999999999999999999999999999999998 88999999999999999999999999886
No 131
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=1.7e-08 Score=90.02 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008755 429 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY 508 (554)
Q Consensus 429 ~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 508 (554)
.++..+..+...- ....+...+......+|+++.+++.+|..+...|++++|+..|+++++.+| ++..+..++.+.
T Consensus 8 ~~~~~a~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQG---EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTT---CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 3445555443322 222233344455667789999999999999999999999999999999999 887777666553
Q ss_pred H-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 509 L-ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 509 ~-~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+ ...+..+|+..++++++++|++..+++++|.++..+|++++|++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 3 33445568999999999999999999999999999999999974
No 132
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.81 E-value=2.6e-08 Score=94.92 Aligned_cols=96 Identities=18% Similarity=0.000 Sum_probs=86.3
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....|.+...++.+|..++..|++++|+..|+++++++|++..++.++|.+|..+|++++|+..++++++++|++...+.
T Consensus 70 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (275)
T 1xnf_A 70 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149 (275)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
..+.+ ...|++++|+.
T Consensus 150 ~~~~~-~~~~~~~~A~~ 165 (275)
T 1xnf_A 150 WLYLA-EQKLDEKQAKE 165 (275)
T ss_dssp HHHHH-HHHHCHHHHHH
T ss_pred HHHHH-HHhcCHHHHHH
Confidence 66655 56688888864
No 133
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.81 E-value=1.6e-08 Score=84.27 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=80.3
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
..|.+...++.+|..++..|++++|+..|+++++.+|++ ..+++++|.+|..+|++++|+..++++++++| +
T Consensus 33 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~ 111 (131)
T 1elr_A 33 LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-T 111 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C
T ss_pred cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-C
Confidence 346778899999999999999999999999999999887 89999999999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHHcCC
Q 008755 532 VKAYLRRGTAREMLGY 547 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~ 547 (554)
......++.++..+++
T Consensus 112 ~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 112 PDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888776654
No 134
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.80 E-value=5.1e-08 Score=96.49 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=86.7
Q ss_pred hhHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 462 QSAEIAKEK------------GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 462 ~~~~~~~~~------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
++...+..+ |..++..|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 666666665 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 530 KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 530 ~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++..+++.+|.++..+|++++|++
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999874
No 135
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.80 E-value=1.4e-08 Score=97.02 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=87.7
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---- 527 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---- 527 (554)
.+.....+..+|..+...|++++|+..|++++++ +|....++.++|.+|+.+|++++|+..+++++++
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999999998 4667889999999999999999999999999999
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 528 ----DKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 ----~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|....+++++|.++..+|++++|++
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77778899999999999999999974
No 136
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.79 E-value=1.7e-08 Score=98.12 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC---
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN--- 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~--- 531 (554)
..+..+.++|.++...|++++|+.+|++++++.+.. ..++.++|.+|... |++++|+.+|++++++.|++
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 457899999999999999999999999999997753 56899999999995 99999999999999998854
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..++.++|.++..+|++++|++
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5678999999999999999975
No 137
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.79 E-value=5.7e-08 Score=78.37 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 535 (554)
.+..++.+|..+++.++|+.|+..|++|++.. +....++.++|.+|+++|++++|+..++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35678999999999999999999999999873 34578999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 008755 536 LRRGTA 541 (554)
Q Consensus 536 ~~~g~~ 541 (554)
.++...
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 888744
No 138
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.78 E-value=3.8e-09 Score=105.10 Aligned_cols=81 Identities=17% Similarity=0.049 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
..++++|.++++.|+|++|+.+|+++|+++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++..++.+...
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999988544
Q ss_pred c
Q 008755 545 L 545 (554)
Q Consensus 545 ~ 545 (554)
.
T Consensus 311 ~ 311 (338)
T 2if4_A 311 E 311 (338)
T ss_dssp -
T ss_pred H
Confidence 4
No 139
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.77 E-value=2.7e-08 Score=96.62 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 008755 462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK- 533 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~- 533 (554)
..+..+.++|.++... |++++|+.+|++++++.|.+ ..++.++|.+|.++|+|++|+..|+++++++|++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 3467899999999996 99999999999999998754 568999999999999999999999999999987643
Q ss_pred ------HHHHHHHHHHHcCCHHHHhc
Q 008755 534 ------AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ------~~~~~g~~~~~~~~~~~A~~ 553 (554)
+++++|.++..+|++++|++
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 68899999999999999974
No 140
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.77 E-value=7.4e-08 Score=93.52 Aligned_cols=93 Identities=9% Similarity=-0.102 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA--AAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
+.+...+..+|..+.+.|++++|+..|+++++.+|++.......+ ..+...|++++|+..|+++++.+|+++.+++++
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 567889999999999999999999999999999999864433333 223344889999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.++..+|++++|++
T Consensus 207 a~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 207 AACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 999999999999975
No 141
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.75 E-value=2.5e-08 Score=105.16 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=87.3
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..|+++..+..+|..++..|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++..+++.+
T Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 384 (537)
T 3fp2_A 305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
|.++..+|++++|++
T Consensus 385 ~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 385 AEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCHHHHHH
Confidence 999999999999874
No 142
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.75 E-value=5.1e-08 Score=100.31 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=89.1
Q ss_pred ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV--- 532 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~--- 532 (554)
.....|.++..++.+|..++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|++.
T Consensus 52 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 131 (450)
T 2y4t_A 52 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEK 131 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Confidence 34446788999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHH------------HHHHHHcCCHHHHhc
Q 008755 533 KAYLRR------------GTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ~~~~~~------------g~~~~~~~~~~~A~~ 553 (554)
.++..+ |.++...|++++|++
T Consensus 132 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 132 EAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 765544 777999999999874
No 143
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.74 E-value=2.5e-08 Score=79.79 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=56.8
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 493 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+|+++.+++++|.+|+++|+|++|+..|+++++++|++..+++++|.+|..+|++++|++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999975
No 144
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.73 E-value=4.2e-08 Score=77.20 Aligned_cols=72 Identities=17% Similarity=0.066 Sum_probs=67.4
Q ss_pred ChhhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 460 QKQSAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
.|++++.+..+|..++..++ .++|..+++++|++||++..+++.+|..+++.|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46789999999999986665 7999999999999999999999999999999999999999999999999984
No 145
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=4.3e-08 Score=95.28 Aligned_cols=102 Identities=10% Similarity=-0.054 Sum_probs=93.0
Q ss_pred ccccccccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHc---CCHHHHHHHHH
Q 008755 452 KLSTNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAY----LES---GSFLQAEADCT 522 (554)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~ 522 (554)
.....+..+|+...+|+.++.++...+ ++++++..++++|+.+|++..+|+.++.++ ..+ +++++++..++
T Consensus 55 ~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~ 134 (306)
T 3dra_A 55 ITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILE 134 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred HHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 334456678899999999999999999 999999999999999999999999999999 777 78999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHH--HHhc
Q 008755 523 KAINLDKKNVKAYLRRGTAREMLGYYK--EAIE 553 (554)
Q Consensus 523 ~al~l~p~~~~~~~~~g~~~~~~~~~~--~A~~ 553 (554)
++++++|++..++++++.++..+++++ ++++
T Consensus 135 ~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 135 AMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 999999999999999999999999887 6653
No 146
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.70 E-value=3e-08 Score=94.54 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=86.5
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL---- 527 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---- 527 (554)
.+..+..+..+|..++..|++++|+..|++++++. |....++.++|.+|..+|++++|+..+++++++
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999883 556789999999999999999999999999999
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 528 ----DKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 ----~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|....+++++|.++..+|++++|++
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 57778899999999999999999974
No 147
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.70 E-value=3e-08 Score=97.03 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHh
Q 008755 481 LKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 481 ~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~g~~~~~~~~~~~A~ 552 (554)
++|+..|++|++ ++|++..+|.++|.++...|++++|...|+++++++|++.. +|.+++.++..+|++++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHH
Confidence 555555555555 45555555555555555555555555555555555555544 5555555555555555543
No 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.70 E-value=6.6e-08 Score=102.72 Aligned_cols=103 Identities=10% Similarity=0.066 Sum_probs=94.7
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHH
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAE 518 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~ 518 (554)
......+..+|+...+|+.++.++...++ +++++..|+++++.+|++..+|++++.++.+++ +|++++
T Consensus 50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el 129 (567)
T 1dce_A 50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHH
Confidence 33445567789999999999999999988 999999999999999999999999999999999 779999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHhc
Q 008755 519 ADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIE 553 (554)
Q Consensus 519 ~~~~~al~l~p~~~~~~~~~g~~~~~~~-~~~~A~~ 553 (554)
++++++++++|++..+|++++.++..++ .++++++
T Consensus 130 ~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH
Confidence 9999999999999999999999999999 7887764
No 149
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=1.3e-07 Score=90.38 Aligned_cols=120 Identities=20% Similarity=0.142 Sum_probs=93.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHH
Q 008755 425 GGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATY 500 (554)
Q Consensus 425 ~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 500 (554)
++...++.++..+......... ...+..... +.++.+++.+|..+.. .+++++|+..|+++++.+ ++.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A---~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQA---KKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHH---HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHH---HHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 3444555666655443222221 122222222 5677889999999999 999999999999999886 8899
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHhc
Q 008755 501 YSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM----LGYYKEAIE 553 (554)
Q Consensus 501 ~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~ 553 (554)
++++|.+|.. .+++++|+.+|+++++++ +..+++++|.+|.. .+++++|++
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~ 135 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVE 135 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHH
Confidence 9999999999 999999999999999984 89999999999999 999999975
No 150
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.68 E-value=8.2e-08 Score=102.75 Aligned_cols=95 Identities=17% Similarity=0.019 Sum_probs=82.8
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..|.+...|..++..+.+.|++++|+..|+++++.+|++..+|+.++.+|.+.|++++|++.|+++++++|+++.+++.+
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 481 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 35667788888888888889999999999998888888888888899999899999999999999998888888888889
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
+.+|...|++++|++
T Consensus 482 ~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 482 GVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCHHHHHH
Confidence 999999999888864
No 151
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.67 E-value=9.6e-08 Score=102.19 Aligned_cols=95 Identities=18% Similarity=0.098 Sum_probs=90.1
Q ss_pred cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..|++...+..+|..+.+.|++++|+..|+++++++|++..+|+.++.+|.+.|++++|++.|+++++++|++..+++.+
T Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHhc
Q 008755 539 GTAREMLGYYKEAIE 553 (554)
Q Consensus 539 g~~~~~~~~~~~A~~ 553 (554)
+.+|...|++++|++
T Consensus 448 ~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 448 GMQHMQLGNILLANE 462 (597)
T ss_dssp HHHHHHHTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 999999999999975
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=1.7e-08 Score=89.80 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=73.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCH-
Q 008755 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA-REMLGYY- 548 (554)
Q Consensus 471 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~-~~~~~~~- 548 (554)
+..++..|++++|+..|+++++.+|++..+|+.+|.+|+..|+|++|+..|+++++++|++..+++.+|.+ +...|++
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999 7899998
Q ss_pred -HHHhc
Q 008755 549 -KEAIE 553 (554)
Q Consensus 549 -~~A~~ 553 (554)
++|++
T Consensus 97 ~~~A~~ 102 (177)
T 2e2e_A 97 TAQTRA 102 (177)
T ss_dssp CHHHHH
T ss_pred hHHHHH
Confidence 88864
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=9.1e-08 Score=91.02 Aligned_cols=123 Identities=15% Similarity=0.012 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--HHHHHHH
Q 008755 427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNR 504 (554)
Q Consensus 427 d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 504 (554)
+...+..+..+...-+.. .+...+.......|++. .++.+|..+++.++|++|+..|+++++..+.. ..+++++
T Consensus 102 ~dl~LayA~~L~~~g~y~---eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYA---DAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHHHHHTCHH---HHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 444555555554332222 22233334444567888 99999999999999999999999887753221 3589999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 505 AAAYLESGSFLQAEADCTKAINLD--KK-NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 505 a~~~~~~~~~~~A~~~~~~al~l~--p~-~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|.++..+|++++|+.+|++++... |. ..++++++|.++..+|+.++|.+
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999665 55 67899999999999999999974
No 154
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=1.2e-07 Score=92.06 Aligned_cols=92 Identities=20% Similarity=0.212 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--- 531 (554)
....++..+|.++...|+|++|+.+|+++++. .+....+++++|.+|.++|+|++|+..+++++++.+..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 45678999999999999999999999999953 22235689999999999999999999999999987544
Q ss_pred ---HHHHHHHHHHHHHcCC-HHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGY-YKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~-~~~A~~ 553 (554)
..+++++|.++..+|+ +++|++
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 7899999999999995 688874
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=2.4e-07 Score=89.83 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI---KLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 530 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---- 530 (554)
....+++.+|..++..|+|++|+..|++++ +..|++. .+++++|.+|..+|+|++|+..+++++++.++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 457799999999999999999999999999 5566543 68999999999999999999999999998643
Q ss_pred --CHHHHHHHHHHHHHcCCHHHH
Q 008755 531 --NVKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 531 --~~~~~~~~g~~~~~~~~~~~A 551 (554)
...+++++|.+|..+|++++|
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHH
Confidence 278899999999999999999
No 156
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.63 E-value=3.4e-07 Score=87.44 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 008755 462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
.++..++.+|..+.. .+++++|+..|+++++.+ ++.+++++|.+|.. .+++++|+.+|+++++++ +..
T Consensus 72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 147 (273)
T 1ouv_A 72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGD 147 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHH
Confidence 367889999999999 999999999999999884 88999999999999 999999999999999986 688
Q ss_pred HHHHHHHHHHH----cCCHHHHhc
Q 008755 534 AYLRRGTAREM----LGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~----~~~~~~A~~ 553 (554)
+++++|.+|.. .+++++|++
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999999 999999874
No 157
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.63 E-value=7.5e-08 Score=83.18 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------ 531 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------ 531 (554)
...+..+|..++..|++++|+..|++++++.+.. ..++.++|.++..++++++|+..+++++++.+..
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 128 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence 4578888888888888888888888888775442 5678888888888888888888888888887766
Q ss_pred HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++.+|.++..+|++++|++
T Consensus 129 ~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 129 GRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHH
Confidence 4567888888888888888864
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=1.8e-07 Score=75.30 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~ 531 (554)
.|.+...++.+|..++..|++++|+..|+++++.+|+ +..++.++|.++..+ +++++|++.++++++.+|.+
T Consensus 36 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 36 DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 3467789999999999999999999999999999999 999999999999999 99999999999999999975
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=1.5e-08 Score=97.85 Aligned_cols=77 Identities=19% Similarity=0.103 Sum_probs=71.8
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
..+...|+++..++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|+|++|+..|+++++++|++
T Consensus 29 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 29 RAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999999865
No 160
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.59 E-value=1.7e-07 Score=95.11 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DKK 530 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~ 530 (554)
+.....++.+|..++..|+|++|+..|+++++++|++. .+++++|.+|+.+|+|++|+..+++++++ +|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 45566677777777777777777777777777777765 46777777777777777777777777777 455
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
...+++.+|.+|..+|++++|++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~ 147 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAI 147 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHH
Confidence 66677777777777777777753
No 161
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.59 E-value=1.8e-07 Score=91.51 Aligned_cols=93 Identities=9% Similarity=-0.132 Sum_probs=62.8
Q ss_pred ChhhHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755 460 QKQSAE-IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLR 537 (554)
Q Consensus 460 ~~~~~~-~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~~~~~ 537 (554)
.|.+.. .|..+|..+.+.|++++|+..|+++++.+|....+|...+...+. +|++++|+..|+++++++|++..++..
T Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 208 (308)
T 2ond_A 129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA 208 (308)
T ss_dssp SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 344444 677777777777777777777777777777666666655554333 567777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHh
Q 008755 538 RGTAREMLGYYKEAI 552 (554)
Q Consensus 538 ~g~~~~~~~~~~~A~ 552 (554)
++..+..+|++++|+
T Consensus 209 ~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 209 YIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHTTCCHHHHH
T ss_pred HHHHHHHCCCHHHHH
Confidence 777777777776665
No 162
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.59 E-value=1.2e-07 Score=91.81 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=89.2
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
......|..+..+..+|..++..|++++|+..|++++++ +|....++..+|.+|..+|++++|+..++++++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334557889999999999999999999999999999995 566788999999999999999999999999999
Q ss_pred c--------CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 527 L--------DKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 527 l--------~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+ +|....+++++|.++..+|++++|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 132 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 132 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8 35667889999999999999999974
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=1.2e-07 Score=85.83 Aligned_cols=92 Identities=9% Similarity=-0.063 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC-
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK------LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---DKKN- 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~p~~- 531 (554)
..+..+..+|..+...|++++|+..|+++++ ..+....++.++|.+|..+|++++|+..+++++++ .+++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 5688999999999999999999999999998 44456778999999999999999999999999998 4433
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++++|.++..+|++++|++
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQ 128 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5578999999999999999864
No 164
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.57 E-value=7.8e-08 Score=100.56 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=87.8
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
....|.+...+..+|..+...|++++|+..|+++++.+|++..++.++|.+|...|++++|+..++++++++|++..+++
T Consensus 297 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 376 (514)
T 2gw1_A 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN 376 (514)
T ss_dssp HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH
Confidence 34456777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHhc
Q 008755 537 RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 537 ~~g~~~~~~~~~~~A~~ 553 (554)
.+|.++..+|++++|++
T Consensus 377 ~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH
Confidence 99999999999999864
No 165
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.57 E-value=1.4e-07 Score=91.45 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=86.4
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL---- 527 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---- 527 (554)
.+.....+..+|..+...|++++|+..|++++++. |....++.++|.+|..+|++++|+..+++++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999884 556778999999999999999999999999999
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 528 ----DKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 ----~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|....+++.+|.++..+|++++|++
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77778899999999999999999974
No 166
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.56 E-value=1.9e-07 Score=94.20 Aligned_cols=93 Identities=17% Similarity=0.072 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC-
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAIN-----LD- 528 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~- 528 (554)
+..+..+..+|..+...|+|++|+..|++++++.+.. ..+++++|.+|..+|++++|+.+++++++ .+
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 4667899999999999999999999999999885543 35899999999999999999999999999 46
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 529 KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 529 p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|....+++++|.++..+|++++|++
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHE 285 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 7888999999999999999999974
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.56 E-value=2.2e-07 Score=91.36 Aligned_cols=99 Identities=6% Similarity=-0.130 Sum_probs=91.5
Q ss_pred cccccccccChhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHc
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-G-SFLQAEADCTKAINL 527 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~l 527 (554)
......+..+|++..+|+.++.++...+ ++++++..++++|+.+|++..+|+.++.++..+ + +++++++.+++++++
T Consensus 75 ~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~ 154 (349)
T 3q7a_A 75 ELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP 154 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence 3344556778999999999999999999 599999999999999999999999999999998 8 999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH
Q 008755 528 DKKNVKAYLRRGTAREMLGYYK 549 (554)
Q Consensus 528 ~p~~~~~~~~~g~~~~~~~~~~ 549 (554)
+|+|..++++++.++..+++++
T Consensus 155 dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 155 DPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988776
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.54 E-value=3.1e-07 Score=79.20 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--- 531 (554)
...+..+..+|..++..|++++|+..|++++++.+. ...++.++|.+|..+|++++|+..+++++++.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 467788999999999999999999999999987432 25688999999999999999999999999886543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++++|.++..+|++++|++
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~ 110 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAID 110 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6678999999999999999874
No 169
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=7.1e-07 Score=86.46 Aligned_cols=92 Identities=13% Similarity=0.028 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI---NLDKKNV 532 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al---~l~p~~~ 532 (554)
.....++.+|..+...|++++|+..|+++++..+.. ..+++++|.+|..+|+|++|+..|++++ +..|++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 344556778999999999999999999999875543 5689999999999999999999999999 5566643
Q ss_pred ----HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 ----KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ----~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++++|.+|..+|++++|++
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHH
Confidence 689999999999999999975
No 170
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=2.4e-07 Score=78.83 Aligned_cols=82 Identities=13% Similarity=0.020 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
.+.+..|+.|..+.+.+ +.++++..+++.++.+ | ++.+++|++|..|+++++|++|.++++++|+++|+|.++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 46788999999999988 7779999999999998 7 57899999999999999999999999999999999999987
Q ss_pred HHHHHHH
Q 008755 537 RRGTARE 543 (554)
Q Consensus 537 ~~g~~~~ 543 (554)
.+-.+-.
T Consensus 110 Lk~~ie~ 116 (152)
T 1pc2_A 110 LERLIDK 116 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 171
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.52 E-value=5.1e-07 Score=95.87 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=84.2
Q ss_pred ccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~~ 534 (554)
..+|++..+|+.++.++.+.+ +++++++.+++++++||++..+|++++.++..++ .+++++++++++|+++|.+..+
T Consensus 101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence 456799999999999999999 7799999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 008755 535 YLRRGTAREML 545 (554)
Q Consensus 535 ~~~~g~~~~~~ 545 (554)
|++++.++..+
T Consensus 181 W~~r~~ll~~l 191 (567)
T 1dce_A 181 WHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999886
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=2.2e-07 Score=90.77 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----- 531 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----- 531 (554)
.+..+.++|.++.. |++++|+.+|++++++.+.. ..++.++|.+|.++|+|++|+..|++++++.|++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 45677778888877 88888888888888776543 4677788888888888888888888888876543
Q ss_pred -HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 -VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 -~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++++|.++..+|++++|+.
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH
Confidence 2366777778877888887764
No 173
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=2.2e-07 Score=90.82 Aligned_cols=91 Identities=10% Similarity=-0.001 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---- 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---- 531 (554)
..+..+.++|.++...|+|++|+.+|++++++.+. ...++.++|.+|.. |+|++|+.+|++++++.+..
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 55778999999999999999999999999998543 24689999999998 99999999999999998754
Q ss_pred --HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 --VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 --~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++++|.+|..+|++++|++
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5789999999999999999975
No 174
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.50 E-value=2e-07 Score=93.97 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN- 531 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~- 531 (554)
.+..+..++.+|..++..|++++|+.+|++++++.+. ...+++++|.+|..+|+|++|+..+++++++.+..
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 3567899999999999999999999999999998443 35689999999999999999999999999986543
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 -----VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 -----~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++++|.+|..+|++++|++
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2589999999999999999975
No 175
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.49 E-value=5.3e-07 Score=87.94 Aligned_cols=91 Identities=22% Similarity=0.302 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKNV 532 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~ 532 (554)
....++..|..++..|++++|+..|+++++.+|++ ..++..+|.+|+..|++++|+..+++++++ .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34567777888888888888888888888888877 357778888888888888888888888777 44456
Q ss_pred HHHHHHHHHHHHcCCHHHHhc
Q 008755 533 KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 533 ~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++.+|.++..+|++++|++
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~ 104 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIV 104 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHH
Confidence 677888888888888888764
No 176
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=2.3e-07 Score=89.97 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL-------DKKN 531 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~~ 531 (554)
..+..+|..+...+++++|+.+|++++++.+.. ..+++++|.+|..+|+|++|+..|++++++ .+..
T Consensus 116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (293)
T 3u3w_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 344568999999999999999999999975432 347999999999999999999999999953 2233
Q ss_pred HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++++|.+|..+|++++|++
T Consensus 196 ~~~~~nlg~~y~~~~~y~~A~~ 217 (293)
T 3u3w_A 196 VKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 5589999999999999999975
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.48 E-value=9.2e-07 Score=86.47 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=84.5
Q ss_pred ccccccChhhHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Q 008755 454 STNTFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADC 521 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~ 521 (554)
...+..+|++..+|+.++.++...++ +++++..++++|..+|.+..+|++++.++..+++ |++++.++
T Consensus 54 ~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 133 (331)
T 3dss_A 54 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 133 (331)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHH
Confidence 34456788889999999988877665 6889999999999999999999999999988884 89999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHhc
Q 008755 522 TKAINLDKKNVKAYLRRGTAREMLGY-YKEAIE 553 (554)
Q Consensus 522 ~~al~l~p~~~~~~~~~g~~~~~~~~-~~~A~~ 553 (554)
+++++++|.|..++++++.++...++ ++++++
T Consensus 134 ~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 134 ARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999999988888 466653
No 178
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.47 E-value=4.6e-07 Score=88.02 Aligned_cols=101 Identities=11% Similarity=-0.026 Sum_probs=88.8
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHH
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWL--KAISFYTEAIKLNGNNATYYSNRAAAYLESGS------FLQAEADCT 522 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~------~~~A~~~~~ 522 (554)
.........+|++..+|..++.++.+.++++ ++++.++++|+.+|.|..+|++++.++..+++ +++++++++
T Consensus 131 ~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~ 210 (306)
T 3dra_A 131 DILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVK 210 (306)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 3344556678899999999999999999988 99999999999999999999999999988887 999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008755 523 KAINLDKKNVKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 523 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A 551 (554)
++|+++|+|..++++++.++...|+..++
T Consensus 211 ~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 211 DKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999985544
No 179
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.46 E-value=3.5e-07 Score=94.75 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=82.7
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------------------CCHHHH
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-------------------GSFLQA 517 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-------------------~~~~~A 517 (554)
....|.....+..+|..+...|++++|+..|+++++.+|++..+++++|.+|... +.+++|
T Consensus 240 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred HHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence 3445678889999999999999999999999999999999999999999887543 346788
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 518 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+..++++++++|.+..+++.+|.++..+|++++|++
T Consensus 320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 888888888888888888888888888888888864
No 180
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.45 E-value=4.7e-07 Score=91.20 Aligned_cols=92 Identities=18% Similarity=0.064 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAIN-----LDKK 530 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~p~ 530 (554)
..+..+..+|..+...|+|++|+..|++++++.+. ...+++++|.+|..+|++++|+..++++++ .+|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 56788999999999999999999999999987431 346899999999999999999999999999 7888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
...+++++|.++..+|++++|++
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHH
Confidence 89999999999999999999974
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.45 E-value=8.6e-07 Score=86.67 Aligned_cols=88 Identities=10% Similarity=0.044 Sum_probs=83.4
Q ss_pred ccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHH
Q 008755 458 FNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~~ 534 (554)
..+|++..+|..++.++...+ ++++++..++++++.+|.|..+|++++.+...++. +++++++++++|+++|.|..+
T Consensus 102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA 181 (331)
T 3dss_A 102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 181 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence 356799999999999999988 49999999999999999999999999999999999 699999999999999999999
Q ss_pred HHHHHHHHHHc
Q 008755 535 YLRRGTAREML 545 (554)
Q Consensus 535 ~~~~g~~~~~~ 545 (554)
+++++.++..+
T Consensus 182 W~~R~~ll~~l 192 (331)
T 3dss_A 182 WHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999887
No 182
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.44 E-value=6e-07 Score=90.52 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DKKN 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~ 531 (554)
.....++.+|..++..|++++|+..|+++++.+|++. .++..+|.+|+.+|+|++|+..+++++++ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3456778888888888888888888888888888873 57888888888888888888888888877 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++.+|.++..+|++++|++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~ 108 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIV 108 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH
Confidence 6678888888888888888864
No 183
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.43 E-value=2e-07 Score=94.56 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKN 531 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~ 531 (554)
+..++.+|..++..|++++|+..|++++++ +|....++.++|.+|..+|++++|+..|++++++ .+..
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 165 (411)
T 4a1s_A 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE 165 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence 468999999999999999999999999998 6777889999999999999999999999999999 6667
Q ss_pred HHHHHHHHHHHHHcCC
Q 008755 532 VKAYLRRGTAREMLGY 547 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~~ 547 (554)
..+++++|.+|..+|+
T Consensus 166 ~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc
Confidence 8899999999999999
No 184
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.43 E-value=9.5e-07 Score=91.47 Aligned_cols=86 Identities=13% Similarity=-0.015 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCC
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDK 529 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p 529 (554)
.+.....|.++|.+|+..|++++|+.+|++++++. +..+.++.++|.++...+ +|++|+.+|+++++++|
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 45667788888888888888888888888888763 345778888887776654 58888888888888888
Q ss_pred CCHHHHHHHHHHHHHc
Q 008755 530 KNVKAYLRRGTAREML 545 (554)
Q Consensus 530 ~~~~~~~~~g~~~~~~ 545 (554)
+++.+++.++.++..+
T Consensus 170 ~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRL 185 (472)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888876544
No 185
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=4.7e-07 Score=81.88 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=80.8
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---cCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--K 530 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~ 530 (554)
.+..+..+..+|..+...|++++|+..|++++++ .++ ...++.++|.++..+|++++|+..+++++++.+ .
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 4567889999999999999999999999999998 442 356799999999999999999999999998743 2
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 N----VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~----~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+ ..++.++|.++..+|++++|++
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 2 3356899999999999999874
No 186
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.40 E-value=7.5e-07 Score=81.88 Aligned_cols=91 Identities=11% Similarity=-0.027 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCC
Q 008755 462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~ 531 (554)
.++.+++++|..+.. .+++++|+..|+++++.++ +++.+++++|.+|.. .+++++|+.+|++++++ +.+
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~ 161 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT 161 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence 567889999999998 8999999999999999987 358999999999999 88999999999999999 678
Q ss_pred HHHHHHHHHHHHHcC------CHHHHhc
Q 008755 532 VKAYLRRGTAREMLG------YYKEAIE 553 (554)
Q Consensus 532 ~~~~~~~g~~~~~~~------~~~~A~~ 553 (554)
..+++++|.+|.... ++++|++
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~ 189 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALH 189 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 889999999998653 7888764
No 187
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.40 E-value=1e-06 Score=88.85 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--- 531 (554)
+.....+..+|..++..|++++|+..|++++++.+... .++.++|.+|..+|++++|+..+++++++.+..
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 44556677777777777777777777777776654432 266777777777777777777777777666544
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++.+|.++..+|++++|++
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 5566677777777777777653
No 188
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.35 E-value=1.1e-06 Score=80.74 Aligned_cols=121 Identities=11% Similarity=-0.027 Sum_probs=89.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhcCCCHHH
Q 008755 425 GGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDK----QWLKAISFYTEAIKLNGNNATY 500 (554)
Q Consensus 425 ~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~~ 500 (554)
++......++..+...- ....+..-+..... ..++.+++++|..+.. + ++++|+.+|+++++ +.++.+
T Consensus 16 g~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSG---DYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHH
T ss_pred CCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHH
Confidence 44455566666654422 11112222222222 3577889999999887 6 89999999999964 568899
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH----cCCHHHHhc
Q 008755 501 YSNRAAAYLE----SGSFLQAEADCTKAINLDK--KNVKAYLRRGTAREM----LGYYKEAIE 553 (554)
Q Consensus 501 ~~~~a~~~~~----~~~~~~A~~~~~~al~l~p--~~~~~~~~~g~~~~~----~~~~~~A~~ 553 (554)
++++|.+|.. .+++++|+.+|++++++.+ +++.+++++|.+|.. .+++++|++
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999987 8899999999999999887 458999999999999 888888864
No 189
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.28 E-value=2.3e-06 Score=86.03 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=82.6
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-- 530 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-- 530 (554)
.+..+..++.+|..++..|++++|+.+|++++++.+. ...+++++|.+|..+|+|++|+..+++++++.+.
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 4678899999999999999999999999999987543 2558899999999999999999999999997431
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 ----NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ----~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
...+++++|.+|..+|++++|++
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 24578999999999999999975
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=1.8e-06 Score=89.59 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK 530 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~ 530 (554)
+....+.+..+..+|+|++|+..|+++|++ .|++ ...++++|.+|..+|+|++|+..++++|++ .|+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 334455666778899999999999999976 3444 467999999999999999999999999977 355
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NV---KAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~---~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++ ..++++|.+|..+|+|++|+.
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~ 414 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHG 414 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 54 468999999999999999974
No 191
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.27 E-value=8.1e-07 Score=86.59 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----- 531 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----- 531 (554)
....+..+|..++..|++++|+..|++++++ .+....++..+|.+|..+|++++|+..+++++++.+..
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 121 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH
Confidence 3678999999999999999999999999987 45567899999999999999999999999999986643
Q ss_pred -HHHHHHHHHHHHHcCC
Q 008755 532 -VKAYLRRGTAREMLGY 547 (554)
Q Consensus 532 -~~~~~~~g~~~~~~~~ 547 (554)
..+++.+|.++..+|+
T Consensus 122 ~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 4489999999999999
No 192
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=7.6e-06 Score=80.36 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
.+++..+..........++|+..++++|+++|++..+|+.++.++..++ +++++++.++++++.+|++..+++.++.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3344444444555566678999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHc-C-CHHHHhc
Q 008755 543 EML-G-YYKEAIE 553 (554)
Q Consensus 543 ~~~-~-~~~~A~~ 553 (554)
..+ + +++++++
T Consensus 134 ~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 134 DRISPQDPVSEIE 146 (349)
T ss_dssp HHHCCSCCHHHHH
T ss_pred HHhcCCChHHHHH
Confidence 988 7 7776653
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.25 E-value=3.2e-06 Score=87.71 Aligned_cols=96 Identities=8% Similarity=-0.021 Sum_probs=82.9
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL- 527 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l- 527 (554)
-..+|..+..+.++|..|..+|+|++|+.+|+++|++ .|++ ...++|+|.+|..+|+|++|+..|++|+++
T Consensus 344 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999976 4555 457899999999999999999999999986
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHh
Q 008755 528 ----DKKNVK---AYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 528 ----~p~~~~---~~~~~g~~~~~~~~~~~A~ 552 (554)
-|+++. .+.+++.++..+++|++|.
T Consensus 424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466644 4568899999999988875
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=2e-06 Score=69.21 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 497 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+...++++|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 59 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999975
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.25 E-value=1.8e-05 Score=67.08 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=71.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q 008755 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM- 544 (554)
Q Consensus 470 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~- 544 (554)
+|..+...+.+++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 899998889999999999999887 688999999999998 88999999999999987 679999999999998
Q ss_pred ---cCCHHHHhc
Q 008755 545 ---LGYYKEAIE 553 (554)
Q Consensus 545 ---~~~~~~A~~ 553 (554)
.+++++|++
T Consensus 107 ~g~~~d~~~A~~ 118 (138)
T 1klx_A 107 KGVVKNEKQAVK 118 (138)
T ss_dssp SSSCCCHHHHHH
T ss_pred CCCCcCHHHHHH
Confidence 888888864
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.21 E-value=3.1e-06 Score=65.36 Aligned_cols=58 Identities=36% Similarity=0.474 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 496 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+..+++++|.+++..++|++|+..|+++++++|++..+++++|.++..+|++++|++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999974
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.20 E-value=2.8e-06 Score=86.73 Aligned_cols=84 Identities=12% Similarity=-0.018 Sum_probs=70.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH---H
Q 008755 470 KGNQAYKDKQWLKAISFYTEAIKL-----NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINL-----DKKNV---K 533 (554)
Q Consensus 470 ~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~~~---~ 533 (554)
......+.|+|++|+..|+++|++ .|+++ ..++++|.+|..+|+|++|+..|++++++ .|+++ .
T Consensus 304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 344445578999999999999985 45554 57899999999999999999999999977 34554 4
Q ss_pred HHHHHHHHHHHcCCHHHHhc
Q 008755 534 AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~~~~~~~A~~ 553 (554)
.++++|.+|..+|+|++|+.
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~ 403 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEK 403 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHH
Confidence 68999999999999999974
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.19 E-value=5.7e-06 Score=64.81 Aligned_cols=60 Identities=18% Similarity=0.083 Sum_probs=56.9
Q ss_pred cCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 494 NGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 494 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+|++++++..+|.+++..++ .++|...++++++++|+++.+++.+|..+.+.|+|++|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 68999999999999987776 7999999999999999999999999999999999999975
No 199
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.17 E-value=2.8e-06 Score=89.73 Aligned_cols=93 Identities=10% Similarity=0.004 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
.|++...|+.++..+.+.|++++|...|+++++++|.++ .+|.+++.++.+.|++++|.+.|++|++..|.....+...
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 445555555555555555555555555555555555553 3555555555555555555555555555555554444444
Q ss_pred HHH-HHHcCCHHHHh
Q 008755 539 GTA-REMLGYYKEAI 552 (554)
Q Consensus 539 g~~-~~~~~~~~~A~ 552 (554)
+.+ +...|++++|.
T Consensus 397 a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAF 411 (530)
T ss_dssp HHHHHHHTCCHHHHH
T ss_pred HHHHHHHcCChhHHH
Confidence 433 23455555554
No 200
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.14 E-value=1.7e-06 Score=82.31 Aligned_cols=91 Identities=14% Similarity=0.055 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRG 539 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~g 539 (554)
...+....++..+...|+|++|.+.|++.+..+|++. +++.+|.++++.++|++|+..++++++..+.. ..+++++|
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG 178 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHG 178 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence 3456778889999999999999999999999999988 99999999999999999999999888764222 45899999
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.++..+|++++|++
T Consensus 179 ~al~~LG~~~eAl~ 192 (282)
T 4f3v_A 179 VAAANLALFTEAER 192 (282)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHH
Confidence 99999999999974
No 201
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.10 E-value=1.3e-05 Score=80.15 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 530 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---- 530 (554)
....+..+|..++..|++++|+..|++++++. |....++.++|.+|+.+|++++|+..+++++++.+.
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 45668899999999999999999999999875 334567889999999999999999999999999875
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 -NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 -~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
...+++++|.++...|++++|++
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~ 195 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARS 195 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35678899999999999999864
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.07 E-value=1.4e-06 Score=68.96 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=59.0
Q ss_pred cccChhhHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755 457 TFNQKQSAE-IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 457 ~~~~~~~~~-~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (554)
....|++.. .++.+|.+++..|++++|+..|+++++++|++..++.+ +.+.+++..|+++++++|++.
T Consensus 27 l~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 27 LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 334567788 99999999999999999999999999999999988754 567889999999998888653
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.05 E-value=8.7e-06 Score=83.15 Aligned_cols=90 Identities=12% Similarity=0.136 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK 530 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~ 530 (554)
.+........+..+|+|++|+..|++++++ .|++ ...+++++.+|..+|+|++|+..+++++++ .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 444555566677899999999999999975 3445 467899999999999999999999999976 345
Q ss_pred CHH---HHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVK---AYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~---~~~~~g~~~~~~~~~~~A~~ 553 (554)
++. .++++|.+|..+|++++|+.
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~ 392 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMK 392 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 544 68999999999999999974
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.04 E-value=3.2e-05 Score=75.88 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------------------------
Q 008755 463 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAY------------------------------- 508 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~------------------------------- 508 (554)
++-.++.+|..++..+ ++.+|+.+|++|++++|++..+|..++.+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 3455667788887754 458899999999999999887776544443
Q ss_pred -------------HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 509 -------------LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 509 -------------~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
...|++++|+..+++|+.++| +..+|..+|.++...|++++|++
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e 331 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAAD 331 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 357999999999999999997 47888999999999999999975
No 205
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.04 E-value=1.9e-05 Score=83.35 Aligned_cols=88 Identities=10% Similarity=-0.116 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~ 543 (554)
..|...+..+.+.|++++|+..|++|++..|.....+...+.. +...|++++|...|+++++++|+++.++..++..+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4666667666667777777777777777666665555554443 334667777777777777777777777777777776
Q ss_pred HcCCHHHHh
Q 008755 544 MLGYYKEAI 552 (554)
Q Consensus 544 ~~~~~~~A~ 552 (554)
.+|++++|.
T Consensus 437 ~~g~~~~Ar 445 (530)
T 2ooe_A 437 HLNEDNNTR 445 (530)
T ss_dssp TTTCHHHHH
T ss_pred hCCCHhhHH
Confidence 777766664
No 206
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.99 E-value=1.2e-05 Score=80.40 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD-------- 528 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------- 528 (554)
....+..+|..++..|++++|+..|++++++.+.. ..++.++|.++...|+|++|+..+++++++.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 45678899999999999999999999999886543 2347899999999999999999999999985
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 529 KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 529 p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|....++.++|.++..+|++++|++
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3345678889999999999999864
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.95 E-value=3.2e-05 Score=72.75 Aligned_cols=68 Identities=9% Similarity=-0.033 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Q 008755 463 SAEIAKEKGNQAYKD-----KQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~ 530 (554)
+..+|..+|..|.+. |+.++|..+|+|||+++|+. ...++..|..+.. .++++++.+.+++++..+|.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444555555555552 55555555555555555542 5555555555544 25555555555555555443
No 208
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.94 E-value=4.1e-05 Score=62.62 Aligned_cols=81 Identities=11% Similarity=-0.026 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLK---AISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
...+..|+.+..+.+..+..+ ++..++..++.+ | ..-++++.+|..++++|+|.+|..+++..|+.+|+|.++..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 456788999999998887777 999999999887 5 46789999999999999999999999999999999999876
Q ss_pred HHHHHH
Q 008755 537 RRGTAR 542 (554)
Q Consensus 537 ~~g~~~ 542 (554)
.+..+-
T Consensus 113 Lk~~i~ 118 (126)
T 1nzn_A 113 LERLID 118 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 209
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.88 E-value=3.3e-05 Score=79.75 Aligned_cols=86 Identities=14% Similarity=0.031 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHH-H--HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCH
Q 008755 461 KQSAEIAKEKGNQ-A--YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----SFLQAEADCTKAINLDKKNV 532 (554)
Q Consensus 461 ~~~~~~~~~~g~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~l~p~~~ 532 (554)
+.++.+++++|.. + ...+++++|+..|+++++. .++.+++++|.+|. .| ++++|+.+|+++. +.++
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~ 318 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV 318 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence 4455556666665 2 3456666666666666543 35666666666665 33 6666666666666 5666
Q ss_pred HHHHHHHHHHHH----cCCHHHHh
Q 008755 533 KAYLRRGTAREM----LGYYKEAI 552 (554)
Q Consensus 533 ~~~~~~g~~~~~----~~~~~~A~ 552 (554)
.+++++|.+|.. ..++++|+
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~ 342 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKAL 342 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHH
Confidence 666666665554 23555554
No 210
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.88 E-value=9e-05 Score=77.17 Aligned_cols=88 Identities=15% Similarity=0.003 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 008755 462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
.++.+++.+|..++. .+++++|+..|+++++. .++.+++++|.+|.. .+++++|+.+|+++.+. +++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 567889999999999 99999999999999876 588999999999998 88999999999999886 5799
Q ss_pred HHHHHHHHHHH----cCCHHHHhc
Q 008755 534 AYLRRGTAREM----LGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~~----~~~~~~A~~ 553 (554)
+++++|.+|.. .+++++|++
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999988 788998874
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.86 E-value=5.7e-05 Score=77.09 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=74.1
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINL- 527 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l- 527 (554)
...++..+..+.++|.+|..+|+|++|+.+|+++|++ .|+++ ..++++|.+|..+|+|++|+..|++|+++
T Consensus 322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999976 35554 57899999999999999999999999987
Q ss_pred ----CCCCHH---HHHHHHHHHHHc
Q 008755 528 ----DKKNVK---AYLRRGTAREML 545 (554)
Q Consensus 528 ----~p~~~~---~~~~~g~~~~~~ 545 (554)
-|+++. .+.+++.++..+
T Consensus 402 ~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 402 RVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHH
Confidence 466654 456666666543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.86 E-value=5.1e-05 Score=77.37 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=68.0
Q ss_pred cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008755 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINL- 527 (554)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l- 527 (554)
-..+|..+..+.++|.+|..+|+|++|+.+|+++|++ .|+++ ..++|+|.+|..+|+|++|+..|++|+++
T Consensus 333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999976 45554 57999999999999999999999999987
Q ss_pred ----CCCCHHH
Q 008755 528 ----DKKNVKA 534 (554)
Q Consensus 528 ----~p~~~~~ 534 (554)
.|+++..
T Consensus 413 ~~~lG~~Hp~~ 423 (433)
T 3qww_A 413 EVAHGKDHPYI 423 (433)
T ss_dssp HHHTCTTCHHH
T ss_pred HHHcCCCChHH
Confidence 4666654
No 213
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.85 E-value=8.7e-05 Score=77.31 Aligned_cols=88 Identities=18% Similarity=0.085 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 462 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
.++.+++.+|..+...| ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.. ++.+
T Consensus 326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 35567888899888865 889999999999887 578899999999998 889999999999998864 6889
Q ss_pred HHHHHHHHHH----cCCHHHHhc
Q 008755 535 YLRRGTAREM----LGYYKEAIE 553 (554)
Q Consensus 535 ~~~~g~~~~~----~~~~~~A~~ 553 (554)
++++|.+|.. .+++++|++
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999988 788888864
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=9.5e-05 Score=62.54 Aligned_cols=74 Identities=20% Similarity=0.058 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 008755 462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
.++.+++++|..|.. .+++++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.++. +..
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~ 130 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SED 130 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHH
Confidence 467899999999999 89999999999999987 689999999999999 899999999999999984 567
Q ss_pred HHHHHH
Q 008755 534 AYLRRG 539 (554)
Q Consensus 534 ~~~~~g 539 (554)
+.++++
T Consensus 131 A~~~l~ 136 (138)
T 1klx_A 131 ACGILN 136 (138)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 776665
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=4.9e-05 Score=64.56 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
....+...|.+.++.++.+.++.+++|.++.+.+ ++++++..+++.++.+ | ++.+++|++|.+++++++|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456788888889989999999999999999988 7889999999999999 7 679999999999999999999975
No 216
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.80 E-value=3.2e-05 Score=79.87 Aligned_cols=91 Identities=14% Similarity=-0.010 Sum_probs=52.7
Q ss_pred ccccChhhHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcC
Q 008755 456 NTFNQKQSAEIAKEKGNQAYKD----KQWLKAISFYTEAIKLNGNNATYYSNRAAA-Y--LESGSFLQAEADCTKAINLD 528 (554)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al~l~ 528 (554)
.....+..+..++++|..+... +++++|+..|+++. |+++.+++++|.+ | ...+++++|+.+|+++.+.
T Consensus 205 aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~- 280 (452)
T 3e4b_A 205 GVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA- 280 (452)
T ss_dssp HHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-
Confidence 3334444455555666665443 46666666666665 5566666666666 2 3455666666666666653
Q ss_pred CCCHHHHHHHHHHHHHcC-----CHHHHh
Q 008755 529 KKNVKAYLRRGTAREMLG-----YYKEAI 552 (554)
Q Consensus 529 p~~~~~~~~~g~~~~~~~-----~~~~A~ 552 (554)
+++.+++++|.+|. .| ++++|+
T Consensus 281 -g~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 281 -DQPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp -TCHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred -CCHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 35666666666665 33 566554
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.79 E-value=5.1e-05 Score=74.44 Aligned_cols=76 Identities=17% Similarity=0.055 Sum_probs=67.8
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 536 (554)
.+.++..+..++..++..|++++|+..+++|++++|+ ..+|..+|.++...|++++|++.|++|+.++|.....++
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~ 348 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW 348 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence 3577888988999999899999999999999999975 678899999999999999999999999999998754443
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.65 E-value=0.00025 Score=60.56 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLD---KK- 530 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~- 530 (554)
...+++....++..+.|+.|+..+..++.+..++ .+++..+|.+++..++|.+|...|++||++. ++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456777778888889999888888877664332 2477888888999999999999998887652 11
Q ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 ---------------------NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ---------------------~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+..|..+.||..++++++|+.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence 13678999999999999999974
No 219
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.54 E-value=0.00046 Score=78.18 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
.+.+..|+++|.++...|++++|+..|.|| ++++.|..++.++.++|+|++|+++|++|.+..++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 356889999999999999999999999886 78999999999999999999999999998877743
No 220
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.51 E-value=0.0004 Score=66.83 Aligned_cols=90 Identities=9% Similarity=-0.097 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYL 536 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~ 536 (554)
....++.+|.++...|++++|+..|.+.|..+| ++.+++..++.+|+++|+.+.|.+.+++..+.+|+ +-....
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence 345567899999999999999999999999997 88999999999999999999999999999999983 233334
Q ss_pred HH--HHHHHHcC--CHHHHh
Q 008755 537 RR--GTAREMLG--YYKEAI 552 (554)
Q Consensus 537 ~~--g~~~~~~~--~~~~A~ 552 (554)
++ +++....| ++++|.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~ 198 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNF 198 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHH
T ss_pred HHHHHHHHHHhCCccHHHHH
Confidence 44 55566556 777764
No 221
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.48 E-value=0.0013 Score=54.52 Aligned_cols=80 Identities=8% Similarity=0.010 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQW---LKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
..+..|+.+..+.+..+. .+++..++..++.+|. .-+.+|.+|..++++|+|.+|..+++..|+.+|+|.++....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 456788888888887654 5799999999999884 567899999999999999999999999999999999987665
Q ss_pred HHHH
Q 008755 539 GTAR 542 (554)
Q Consensus 539 g~~~ 542 (554)
..+-
T Consensus 118 ~~Ie 121 (144)
T 1y8m_A 118 SMVE 121 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 222
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.46 E-value=0.0012 Score=54.01 Aligned_cols=82 Identities=7% Similarity=0.008 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~ 538 (554)
.++..|+.+..+.+..+ ..+++..++..++.+|. .-+.++.+|..++++|+|.+|..+++..|+.+|+|.++.-..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 35677888888877654 45799999999999884 578999999999999999999999999999999999997766
Q ss_pred HHHHHH
Q 008755 539 GTAREM 544 (554)
Q Consensus 539 g~~~~~ 544 (554)
..+-.+
T Consensus 119 ~~Ie~k 124 (134)
T 3o48_A 119 SMVEDK 124 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 223
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.39 E-value=0.0011 Score=75.27 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---------------------------CHHHHHHHHHHHHHcCC
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------------------------NATYYSNRAAAYLESGS 513 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------------------~~~~~~~~a~~~~~~~~ 513 (554)
.+++..|.+.+..+.+.|+|++|++.|.+|++.+++ +...|.+.|.+++..|+
T Consensus 1131 AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1131 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 377889999999999999999999999998866533 12345667777777777
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 514 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 514 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
|++|+.+|+++ ..|..++.+|.++|++++|++
T Consensus 1211 YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1211 YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 77777777775 367777888888888877764
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.38 E-value=0.00024 Score=66.84 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHc-CCHHHHh
Q 008755 482 KAISFYTEAIKLNGN--NATYYSNRAAAYLES-----GSFLQAEADCTKAINLDKKN-VKAYLRRGTAREML-GYYKEAI 552 (554)
Q Consensus 482 ~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~l~p~~-~~~~~~~g~~~~~~-~~~~~A~ 552 (554)
+|...++++|++||+ +..+|..+|..|.++ |+.++|.++|++|++++|+. ...++.+|..++.. +++++|.
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 688899999999999 667999999999996 99999999999999999975 99999999999884 8888875
Q ss_pred c
Q 008755 553 E 553 (554)
Q Consensus 553 ~ 553 (554)
+
T Consensus 261 ~ 261 (301)
T 3u64_A 261 E 261 (301)
T ss_dssp H
T ss_pred H
Confidence 3
No 225
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.24 E-value=0.00029 Score=70.95 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (554)
Q Consensus 466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~ 545 (554)
.|..++.++.+.|+|++|++.|+|+ +++..|...+.+....|+|+.|..+..+ |..+|+ -...+...|.+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad---~l~~lv~~Yek~ 220 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---ELEELINYYQDR 220 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH---HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh---hHHHHHHHHHHC
Confidence 4444555555555555555555554 2444555555555555555555444433 222222 223344555556
Q ss_pred CCHHHHh
Q 008755 546 GYYKEAI 552 (554)
Q Consensus 546 ~~~~~A~ 552 (554)
|++++|+
T Consensus 221 G~~eEai 227 (449)
T 1b89_A 221 GYFEELI 227 (449)
T ss_dssp TCHHHHH
T ss_pred CCHHHHH
Confidence 6666554
No 226
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.23 E-value=0.0014 Score=63.00 Aligned_cols=90 Identities=9% Similarity=-0.060 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHcCCC--
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAA--YLESG--SFLQAEADCTKAINLDKK-- 530 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~--~~~~~--~~~~A~~~~~~al~l~p~-- 530 (554)
+...+.+...+.++++.|+.+.|.+.+++..+.+|+ +-....+++.. .+..| ++++|+..|+++.+..|+
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 378889999999999999999999999999999983 23445555555 55556 899999999999988887
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
....+++ ++.++|++++|.+
T Consensus 213 ~~~lLln---~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 213 TQLGLLN---LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHH---HHHHHTCHHHHHH
T ss_pred cHHHHHH---HHHHcCCHHHHHH
Confidence 3445555 8999999999975
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.19 E-value=0.0011 Score=52.70 Aligned_cols=56 Identities=13% Similarity=-0.028 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
+.-.+.+|..++..++|..|+.+|++|++.. +.....+.++|.++.++|++++|+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~ 67 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHH
Confidence 4557889999999999999999999999974 3567889999999999999999974
No 228
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00088 Score=67.97 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC-
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KN- 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~- 531 (554)
..+..+..+|..++..|+|++|+..+++++.. .+....++.+.+.+|..+++|++|...+++++.+.+ +.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 212 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT 212 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence 45788999999999999999999999999876 333467899999999999999999999999998743 22
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755 532 ---VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 532 ---~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
...+..+|..+...++|++|..
T Consensus 213 ~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 213 QTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456778889999999998853
No 229
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0015 Score=66.31 Aligned_cols=91 Identities=8% Similarity=-0.035 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINL------DKK 530 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~ 530 (554)
.......++..+...|++++|+..|++++...+. ...++.++|.+|..+|+|++|+..+++++.. .+.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 3455667788888899999999999999976432 3678999999999999999999999999876 334
Q ss_pred CHHHHHHHHHHHHHcCCHHHHhc
Q 008755 531 NVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 531 ~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
..+++..++.+|..+|++++|..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~ 196 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKA 196 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHH
Confidence 57789999999999999999864
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.72 E-value=0.012 Score=50.23 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC---C----------------------CHHHHHHHHHHHHHcCCHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---N----------------------NATYYSNRAAAYLESGSFL 515 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~----------------------~~~~~~~~a~~~~~~~~~~ 515 (554)
....+.+...|+.+|.+++|..|+..|++||+... . +.++.+.++.||.++++++
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 35678899999999999999999999999986521 1 1268899999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755 516 QAEADCTKAINLDKKNVKAYLRRGTAR 542 (554)
Q Consensus 516 ~A~~~~~~al~l~p~~~~~~~~~g~~~ 542 (554)
+|+..++..-. .-..++.-..+|..|
T Consensus 140 ~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 140 DAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 99998865322 224566666666554
No 231
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.66 E-value=0.006 Score=61.46 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
.++..|..........|+++.|..+..+ |..+|++ ...+..+|.+.|++++|+..+++++.+++.+...+..+|.+
T Consensus 175 ~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il 250 (449)
T 1b89_A 175 NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 250 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4688999999999999999999888876 3355544 45688899999999999999999999999999999999988
Q ss_pred HHH
Q 008755 542 REM 544 (554)
Q Consensus 542 ~~~ 544 (554)
|.+
T Consensus 251 ~~k 253 (449)
T 1b89_A 251 YSK 253 (449)
T ss_dssp HHT
T ss_pred HHh
Confidence 854
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.27 E-value=0.012 Score=48.05 Aligned_cols=76 Identities=9% Similarity=-0.024 Sum_probs=65.2
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHHHh
Q 008755 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL---QAEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 478 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~---~A~~~~~~al~l~-p-~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
.....+...|.+.+..++...+..+++|.++.+..+-. +++..++..++.+ | .+.+.+|.+|..++++|+|++|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34556778888888888888999999999999888654 4999999999987 5 67889999999999999999997
Q ss_pred c
Q 008755 553 E 553 (554)
Q Consensus 553 ~ 553 (554)
+
T Consensus 95 ~ 95 (126)
T 1nzn_A 95 K 95 (126)
T ss_dssp H
T ss_pred H
Confidence 4
No 233
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.54 E-value=0.024 Score=60.98 Aligned_cols=98 Identities=10% Similarity=-0.056 Sum_probs=82.3
Q ss_pred cccccChhhHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008755 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAI-SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD----- 528 (554)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----- 528 (554)
+.....|..++.|+..+......|+.++|. ..|++|+...|.+...|...+....+.+++++|.+.|+++++.-
T Consensus 334 ~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 334 QAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 344456778999999999999999999997 99999999999999999999999999999999999999999752
Q ss_pred ------CC-----------CHHHHHHHHHHHHHcCCHHHHh
Q 008755 529 ------KK-----------NVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 529 ------p~-----------~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
|. ...+|..++....+.+..+.|.
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 53 3456777777777777777664
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.01 E-value=0.097 Score=43.74 Aligned_cols=125 Identities=11% Similarity=-0.066 Sum_probs=77.4
Q ss_pred EEeccCCcHHHHHHHHHHHHHHHHH---HHHhhhcccccccccC--------hhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008755 420 FIARHGGDRFLLDTVQNMYASLQEQ---ADIATKSKLSTNTFNQ--------KQSAEIAKEKGNQAYKDKQWLKAISFYT 488 (554)
Q Consensus 420 ~~~~~~~d~~ll~~a~~le~~l~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 488 (554)
++-.+.+-+.++.....+|..-... -....+..+...+... ..-+..|...+.. ...++.++|...|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 3445566677777777777652210 0011112222221111 1234555555543 55689999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008755 489 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546 (554)
Q Consensus 489 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~ 546 (554)
.++.+...++.+|...|..-.+.|+..+|.+.+.+|+.+.|...+. +..+..-.+.|
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~ 141 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQ 141 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcC
Confidence 9988888888889999988889999999999999999998875554 34443333333
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.97 E-value=0.27 Score=41.78 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hc------------
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI--NL------------ 527 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~l------------ 527 (554)
..++...-++..++-+|+|..++-++.+ -+.....+..+.||.++++|+.|+..+++.+ +.
T Consensus 31 ~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 31 CKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp ---CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred CChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 3445566678899999999999887743 2456777778899999999999999999999 32
Q ss_pred ---CCCCHHHHH-HHHHHHHHcCCHHHHhc
Q 008755 528 ---DKKNVKAYL-RRGTAREMLGYYKEAIE 553 (554)
Q Consensus 528 ---~p~~~~~~~-~~g~~~~~~~~~~~A~~ 553 (554)
+|.+-+.++ .+|..+.+.|.-+||+.
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~ 135 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIG 135 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhh
Confidence 355566555 46999999999999975
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.83 E-value=0.15 Score=52.40 Aligned_cols=81 Identities=20% Similarity=0.088 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
..+..+|........+..|..+|.+|+.++|++...|+++|.++...++.-+|+=+|-+++.-...++.+.-++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35677888888888999999999999999999999999999999999999999999999999888899999998888765
Q ss_pred c
Q 008755 545 L 545 (554)
Q Consensus 545 ~ 545 (554)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.074 Score=57.36 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
.....+..++..+..+|+|+-|+.+-++|+...|.....|+.++.||.++|+|+.|+-.+.-+
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345577778888999999999999999999999999999999999999999999999766554
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.63 E-value=0.46 Score=39.71 Aligned_cols=50 Identities=10% Similarity=-0.037 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG 512 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 512 (554)
+=+..|...+..-.++|+.++|...+.+||.+.|...+.+. .+...++.|
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le-~a~~nl~~~ 141 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE-IALRNLNLQ 141 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH-HHHHhhhcC
Confidence 33888999999999999999999999999999998765443 333444444
No 239
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.62 E-value=0.18 Score=54.24 Aligned_cols=74 Identities=9% Similarity=-0.129 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE-ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+.....|+++|...|.++..|...+..+...++.++|. +.|++|+...|.+...++.++......|++++|.+
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 345678899999999999999999999999999999997 99999999999999999999999999999988753
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.43 E-value=0.21 Score=49.79 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=44.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
...+...+...|++++|+..+++++..+|-+-.+|..+-.+|+..|+..+|++.|++.-+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455666778888888888888888888777787777788888888888887776544
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.31 E-value=0.18 Score=46.67 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=57.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
..+++.|+.++|+......|+.+|.+......+-+.+.-.|+|++|.+.++.+.+++|+....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 456788999999999999999999999999999999999999999999999999999987554
No 242
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.39 E-value=0.83 Score=47.16 Aligned_cols=90 Identities=6% Similarity=-0.073 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK-KNVKAYLRRG 539 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~g 539 (554)
+...|..+-..+.+.|++++|+..|++..+. .| +...|+.+-..|.+.|++++|.+.+++..+..- .+...|..+-
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4567888889999999999999999998765 34 467888899999999999999999999887632 2677888899
Q ss_pred HHHHHcCCHHHHhc
Q 008755 540 TAREMLGYYKEAIE 553 (554)
Q Consensus 540 ~~~~~~~~~~~A~~ 553 (554)
.+|.+.|+.++|.+
T Consensus 183 ~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 183 KVSMDTKNADKVYK 196 (501)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHhhCCCHHHHHH
Confidence 99999999999864
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.19 Score=54.19 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 501 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
+..-+..+...++|+-|+...++|+...|..-..|+.++.+|..+|+|+.|+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence 3334555668899999999999999999999999999999999999999996
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.06 E-value=0.4 Score=39.71 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA 505 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 505 (554)
..-+.++.++..+++.|+|++|..+.+..|+.+|+|.++.....
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 45678999999999999999999999999999999987766543
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.06 E-value=0.44 Score=38.93 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA 507 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 507 (554)
..-+.++.++..+++.|+|++|..+.++.|+.+|+|..+..-...+
T Consensus 76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4567899999999999999999999999999999998876655433
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.94 E-value=0.54 Score=46.78 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 502 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
..++.+++..|++.+++..+++++..+|-+-.++..+-.+|+..|+..+|+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al 225 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDAL 225 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555555555555555555555555555555555555555554
No 247
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.92 E-value=1.4 Score=45.28 Aligned_cols=89 Identities=9% Similarity=-0.134 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~g~~ 541 (554)
....|...+....+.++.+.|...|++| +..+.....|...|...+..+ +.+.|...|+++++..|+++..+..++..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3466777777777788899999999999 443345667777776666666 59999999999999889888877777777
Q ss_pred HHHcCCHHHHh
Q 008755 542 REMLGYYKEAI 552 (554)
Q Consensus 542 ~~~~~~~~~A~ 552 (554)
....|+.+.|.
T Consensus 364 e~~~~~~~~aR 374 (493)
T 2uy1_A 364 LLRIGDEENAR 374 (493)
T ss_dssp HHHHTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 77777777654
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.81 E-value=5.1 Score=43.53 Aligned_cols=90 Identities=16% Similarity=0.040 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------hcCCCHHHHHHH-------------HHHHHHcCCHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--------LNGNNATYYSNR-------------AAAYLESGSFLQAEAD 520 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~-------------a~~~~~~~~~~~A~~~ 520 (554)
++...|..+|..+.+.++++.|+.+|.++-. ....+.+.+..+ ..+|+++|++++|++.
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHH
Confidence 4567899999999999999999999988521 112233322222 2355566777777766
Q ss_pred HHH------HHH----cCCCC---HHHHHHHHHHHHHcCCHHHH
Q 008755 521 CTK------AIN----LDKKN---VKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 521 ~~~------al~----l~p~~---~~~~~~~g~~~~~~~~~~~A 551 (554)
|.+ |+. ..|.. .......+.-+...|+++.|
T Consensus 759 ~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 759 LIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 644 222 23333 13444556666666665444
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.80 E-value=2.2 Score=42.25 Aligned_cols=87 Identities=11% Similarity=0.020 Sum_probs=67.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCH----H
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKNV----K 533 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~~~----~ 533 (554)
-..+|..|+..|+|.+|+..+++.++--.. ..+++......|..++++.++.+.|.+|.... +.++ .
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 346899999999999999999998874221 24678888999999999999999999987664 1222 2
Q ss_pred HHHHHHHHHH-HcCCHHHHhc
Q 008755 534 AYLRRGTARE-MLGYYKEAIE 553 (554)
Q Consensus 534 ~~~~~g~~~~-~~~~~~~A~~ 553 (554)
....-|..+. ..++|.+|-.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~ 202 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFS 202 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHH
Confidence 3455688888 7999998853
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.74 E-value=1.1 Score=51.26 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------------cCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----------------------NGNNATYYSNRAAAYLESGSFLQAEA 519 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~~a~~~~~~~~~~~A~~ 519 (554)
++...+.+|.+++..|++++|..+|+++-.. ....+.+|+.....+.+.+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344588999999999999999999887310 11134577888888889999999999
Q ss_pred HHHHHHHcCCC-CHH----HHHHHHHHHHHcCCHHHHh
Q 008755 520 DCTKAINLDKK-NVK----AYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 520 ~~~~al~l~p~-~~~----~~~~~g~~~~~~~~~~~A~ 552 (554)
..+.||+..+. +.. .|.++-..+..+++|++|.
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 99999987653 322 4677788889999999984
No 251
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=86.19 E-value=2.1 Score=44.01 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (554)
Q Consensus 480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g 539 (554)
.+.....|+++|...|..+..|...+..+...++.++|...|++|+.. |.+...++..+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~ 253 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYG 253 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 345677888888888888888888888888888889999999999988 88766555443
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.90 E-value=2 Score=39.68 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=40.8
Q ss_pred cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 008755 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 498 (554)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 498 (554)
......+..+|.+++....+...+.-.|+|+.|+..++.+.+++|+..
T Consensus 18 ~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 18 ELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 333444556789999999999999999999999999999999999864
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.47 E-value=2.4 Score=42.72 Aligned_cols=89 Identities=10% Similarity=-0.091 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCH----HH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNV----KA 534 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~----~~ 534 (554)
...+..+|..+++.|++++|.+.|.++.+.... -.+.+.....+++..++|..+...+.++-.+-. .++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346788999999999999999999998876433 356788888899999999999999999876622 222 23
Q ss_pred HHHHHHHHHHcCCHHHHh
Q 008755 535 YLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 535 ~~~~g~~~~~~~~~~~A~ 552 (554)
....|..+...++|.+|-
T Consensus 211 k~~~gl~~l~~r~f~~Aa 228 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAA 228 (429)
T ss_dssp HHHHHHGGGGTSCHHHHH
T ss_pred HHHHHHHHHHhChHHHHH
Confidence 345577777788888774
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=83.38 E-value=5.8 Score=33.75 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h---------------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK--L---------------NGNNATY-YSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
.....+....++.+.++|.+|+..+++.|+ . ||.+.+. ++.+|...-+.++-+||+..+...
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 345566778899999999999999999993 2 3445554 566899999999999999999999
Q ss_pred HHcCCCCH
Q 008755 525 INLDKKNV 532 (554)
Q Consensus 525 l~l~p~~~ 532 (554)
...+|-..
T Consensus 141 f~~~~lf~ 148 (242)
T 3kae_A 141 FGKSFLFS 148 (242)
T ss_dssp HHHCCCHH
T ss_pred cCCccccc
Confidence 98877543
No 255
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.97 E-value=11 Score=32.45 Aligned_cols=30 Identities=10% Similarity=-0.085 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 491 (554)
++...|..+|...+.+|+++-|+++|+++=
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 456789999999999999999999998853
No 256
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=82.47 E-value=12 Score=38.45 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=62.8
Q ss_pred cCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 478 KQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 478 g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
++.++|+..|++..+. .| +...|+.+-..|.+.|++++|++.+++..+.. ..+...|..+-.+|.+.|+.++|.+
T Consensus 84 ~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 4478899999987765 34 56789999999999999999999999988763 2368888899999999999999864
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=81.68 E-value=2.8 Score=42.95 Aligned_cols=53 Identities=17% Similarity=0.008 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
.+..+|.+......+..|..+|.+|+.++|++...|+.+|.+....++.-+|+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 46678888888889999999999999999999999999999999998877764
No 258
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=80.72 E-value=4.9 Score=43.67 Aligned_cols=47 Identities=23% Similarity=0.100 Sum_probs=37.3
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
.+...|++++|++..+ .-++...|.++|..+.+.++++.|+.+|.++
T Consensus 661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455677777776643 2357889999999999999999999999985
No 259
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.42 E-value=18 Score=31.06 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 524 (554)
+++..|. ...+.|+++.|.+..++. ++...|..+|...+..|+++-|+.+|+++
T Consensus 7 D~~~rF~---LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFD---LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHH---HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHH---HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444444 566789999999987764 67889999999999999999999999874
No 260
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=79.73 E-value=20 Score=39.98 Aligned_cols=90 Identities=7% Similarity=-0.128 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAY 535 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~ 535 (554)
..-..+..+-..+.+.|+.++|...|++.-+ ..| +...|+.+-..|.+.|++++|.+.+++..+.. .-+.-.|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4455688888899999999999999976543 244 56889999999999999999999999988753 2367888
Q ss_pred HHHHHHHHHcCCH-HHHh
Q 008755 536 LRRGTAREMLGYY-KEAI 552 (554)
Q Consensus 536 ~~~g~~~~~~~~~-~~A~ 552 (554)
..+-.++++.|+. ++|.
T Consensus 204 ntLI~glcK~G~~~e~A~ 221 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIE 221 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 8888899998874 5553
No 261
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=74.41 E-value=4.4 Score=30.05 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
+.+..+..+|...=+.|+|++|+.+|.++|+.
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44556666777777777888887777777653
No 262
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=74.33 E-value=4.4 Score=30.06 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
.+..+..+|...=+.|+|++|+.+|.++|+.
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666677777777777777777777653
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.28 E-value=35 Score=34.22 Aligned_cols=91 Identities=13% Similarity=0.037 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGN--NATYYSNRAAAYLESGSFLQAEADCTKAIN---LDKKNV 532 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~p~~~ 532 (554)
..+.....++..+...|+|.+|...+.....- ++. -.+.+..-...|+..++|.+|...+.++.. -.+..+
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 45666777888888889999998888876532 111 135666777788888899988888888632 123332
Q ss_pred ----HHHHHHHHHHHHcCCHHHHh
Q 008755 533 ----KAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 533 ----~~~~~~g~~~~~~~~~~~A~ 552 (554)
..+...|..+...++|.+|-
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~ 238 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVA 238 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Confidence 24455677777888887764
No 264
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=73.88 E-value=16 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhc
Q 008755 480 WLKAISFYTEAIKLN 494 (554)
Q Consensus 480 ~~~A~~~~~~al~~~ 494 (554)
.++|+...++|++.|
T Consensus 16 ~~~Ai~lv~~Ave~D 30 (83)
T 2w2u_A 16 EEMARKYAINAVKAD 30 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777665
No 265
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.47 E-value=20 Score=26.46 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhc
Q 008755 481 LKAISFYTEAIKLN 494 (554)
Q Consensus 481 ~~A~~~~~~al~~~ 494 (554)
++|+...++|++.|
T Consensus 9 ~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 9 DMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777777665
No 266
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.62 E-value=6.7 Score=40.02 Aligned_cols=68 Identities=13% Similarity=0.022 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (554)
..+..+..+=..|+..+.|++|.....|+. .|.+ ...++.+|.++.-.++|.+|.+++.+|++..|.+
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 456677777788899999999999999985 3322 4567889999999999999999999999987754
No 267
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=68.14 E-value=12 Score=33.06 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 499 (554)
.+.....+.+|..++.+++|.+|.+++.+|++..|....
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 466788999999999999999999999999999887643
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.49 E-value=11 Score=42.13 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------cCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKL---------------------NGN--NATYYSNRAAAYLESGSFLQAEADC 521 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~--~~~~~~~~a~~~~~~~~~~~A~~~~ 521 (554)
-.-|.+|..++..|++++|..+|+||-.- .++ ...+|.+...++.+.+-|+-+++..
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34588999999999999999999876511 011 2347888888888999999999999
Q ss_pred HHHHHc-CCCCHH----HHHHHHHHHHH
Q 008755 522 TKAINL-DKKNVK----AYLRRGTAREM 544 (554)
Q Consensus 522 ~~al~l-~p~~~~----~~~~~g~~~~~ 544 (554)
+.||+. .+++.. .+.++-.+...
T Consensus 921 ~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 921 LLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 999975 344443 34444444443
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=66.79 E-value=25 Score=28.83 Aligned_cols=53 Identities=19% Similarity=-0.014 Sum_probs=30.8
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 475 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..+|+-++=.+.+...+.-++-+++.+..+|.+|-++|+-.+|.+.+.+|.+.
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44555555555555544444445666666677777777766666666666654
No 270
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.79 E-value=36 Score=28.65 Aligned_cols=63 Identities=8% Similarity=0.014 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHH---HHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYS---NRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~---~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..-+..|..+|+.|+|-+|-+.++.+-...+.. ...+. ..|..+++.|+++.|...+.+++..
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345667889999999999999999988776544 22223 3444566789999999999999874
No 271
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=64.37 E-value=13 Score=27.89 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 492 (554)
+.+-.+-.++..+.+.|+|++||++.++|..
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456677788999999999999999988764
No 272
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=64.19 E-value=9.9 Score=28.33 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
..+..+...+...-..|+|++|+.+|.++|+.
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556777788888899999999999988864
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=63.84 E-value=18 Score=25.95 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 500 (554)
...+|..+...|++++|+.+|.+||...|.-.+.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 4567889999999999999999999998875443
No 274
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=63.33 E-value=9.9 Score=28.82 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
+.+..+...+...-..|+|++|+.+|.++++.
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45667778888888889999999998888764
No 275
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=62.23 E-value=9.2 Score=30.43 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
+.+..+..++...=..|+|++|+.+|.+++++
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45666777777777788888888888888764
No 276
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=60.18 E-value=14 Score=39.33 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 513 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 513 (554)
.+.....+...+..|+|.-|.+..++++..+|++..+...++.+|.+++.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45677789999999999999999999999999999999999999987763
No 277
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=59.78 E-value=15 Score=27.83 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhc
Q 008755 481 LKAISFYTEAIKLN 494 (554)
Q Consensus 481 ~~A~~~~~~al~~~ 494 (554)
++|+....+|++.|
T Consensus 13 ~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 13 TAAVAVLKRAVELD 26 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555566665553
No 278
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=59.53 E-value=15 Score=27.14 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
+.+..+...+...-..|+|++|+.+|.++++.
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666777788888889999999999888864
No 279
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=58.57 E-value=14 Score=27.41 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
.++|+....+|++.| ..|+|++|+..|.++++
T Consensus 10 l~~A~~l~~~Av~~D---------------~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 10 LTKGIELVQKAIDLD---------------TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHH
Confidence 457788888887664 34556666655555554
No 280
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=57.94 E-value=13 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
-..|+....+|++.| ..|+|++|+.+|.+++++
T Consensus 13 ~~~A~~lv~~Ave~D---------------~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELD---------------SESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHH
Confidence 345666777776664 455666666666665543
No 281
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=57.42 E-value=15 Score=29.23 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhc
Q 008755 482 KAISFYTEAIKLN 494 (554)
Q Consensus 482 ~A~~~~~~al~~~ 494 (554)
+|+++|.++++..
T Consensus 43 ~Aie~l~~alk~e 55 (117)
T 2cpt_A 43 HAVQYFLHVVKYE 55 (117)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 4444444444444
No 282
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.40 E-value=9.4 Score=30.06 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHhc
Q 008755 479 QWLKAISFYTEAIKLN 494 (554)
Q Consensus 479 ~~~~A~~~~~~al~~~ 494 (554)
.|++|..+..++|++|
T Consensus 18 ~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3445555555555554
No 283
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=55.65 E-value=44 Score=31.62 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=22.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 508 YLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
.++.++|..|....++.|++.|....+
T Consensus 217 a~K~KNy~tAa~fArrLLel~p~~~~a 243 (325)
T 3mv2_A 217 HFKHKNFLQASYFAGEFLKIISSGPRA 243 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence 458999999999999999999865444
No 284
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=55.25 E-value=68 Score=30.78 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=59.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHh-----cCCCH
Q 008755 426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKL-----NGNNA 498 (554)
Q Consensus 426 ~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~A~~~~~~al~~-----~p~~~ 498 (554)
+...+..+.+.+...+.+.-... .-+.++-++|..--.. .....++..|.+||.. +-.+.
T Consensus 230 Ds~El~~LQq~LLWLLyD~GhL~-------------rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv 296 (472)
T 3re2_A 230 DSIQLSQLQQELLWLLYDMGHIK-------------TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI 296 (472)
T ss_dssp ECHHHHHHHHHHHHHHHHTTTTT-------------TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS
T ss_pred chHHHHHHHHHHHHHHHhccchh-------------hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc
Confidence 45566666677766665533221 3456666666654332 2333488899999865 33456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..|..+|.+|++.++|.+|+....+|-..
T Consensus 297 YPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 297 YPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 67888899999999999999988776543
No 285
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=54.49 E-value=40 Score=35.43 Aligned_cols=43 Identities=14% Similarity=-0.082 Sum_probs=22.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008755 509 LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551 (554)
Q Consensus 509 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A 551 (554)
+..++++.|..++++.-.-........|-+|.++..+|+.++|
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a 338 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEA 338 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHH
Confidence 3445666665555443332223455555555555555555554
No 286
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=52.40 E-value=34 Score=25.32 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 495 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 495 (554)
+++......|..+++.++|.+|+..|+++..+..
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 6677888889999999999999999999986653
No 287
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.58 E-value=1e+02 Score=30.69 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK---LNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
....+.+......++..++|.+|...++++-. ..+..+ .++...|..+...++|.+|..+|.++++.
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45678888999999999999999999999742 233333 46788899999999999999999998865
No 288
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=51.18 E-value=31 Score=30.37 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (554)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (554)
...++.+|..++..++|.+|.+++.+|++..|....
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 456789999999999999999999999999886543
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=50.71 E-value=65 Score=31.61 Aligned_cols=68 Identities=12% Similarity=-0.075 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHc
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GN----NATYYSNRAAAYL-ESGSFLQAEADCTKAINL 527 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l 527 (554)
...-.+.+......++..+++.++...|++|.... +. ...+...-|..++ ..++|++|..+|-++++-
T Consensus 135 ~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 135 KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 34567788888999999999999999999997653 12 2345677888898 899999999999999854
No 290
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=50.12 E-value=22 Score=26.58 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
-.+..++..+...|+|++||.+.++|..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3466788999999999999988877664
No 291
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=47.81 E-value=98 Score=30.30 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=59.7
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh-----cCC
Q 008755 424 HGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKL-----NGN 496 (554)
Q Consensus 424 ~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~-----~p~ 496 (554)
+-+...+..+.+.+...+.+.-... .-+.++-++|..--..- .-..++..|.+||.. .-.
T Consensus 250 ~tds~el~~LQq~LLWlLyd~GhL~-------------rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~ 316 (550)
T 3u84_A 250 HTDSLELLQLQQKLLWLLYDLGHLE-------------RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDE 316 (550)
T ss_dssp SCBCHHHHHHHHHHHHHHHHTTTTT-------------TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTC
T ss_pred cccHHHHHHHHHHHHHHHHhccchh-------------hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccC
Confidence 3345566677777776666543221 34556666666543321 112488889998865 334
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 497 NATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 497 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
+...|..+|-+|++.++|.+|+.....+-..
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 5667888999999999999999988776543
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.63 E-value=25 Score=35.84 Aligned_cols=89 Identities=13% Similarity=0.006 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHH----------HHHHHHHH-----hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAI----------SFYTEAIK-----LNGN-NATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~----------~~~~~al~-----~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
.+..||.....+-..|+..+.. ..+-.+++ .|+. ....++.+-..|+..+.|++|.....++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 4566777777776666655432 12222232 2332 36678888999999999999999999985
Q ss_pred cCCCC-------HHHHHHHHHHHHHcCCHHHHhc
Q 008755 527 LDKKN-------VKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 527 l~p~~-------~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.|.+ ...+|.+|.++..+++|.+|.+
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~ 291 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAIQLDYSTANE 291 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3432 4567889999999999999964
No 293
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=45.37 E-value=30 Score=26.23 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=26.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (554)
Q Consensus 467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 497 (554)
...+|..+...|+++.|+.+|.+||...|.-
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 4457889999999999999999999998764
No 294
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=43.99 E-value=1.3e+02 Score=29.49 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=69.6
Q ss_pred ccCCceecccCCCC----CCCCceeEEEeccCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHH
Q 008755 398 VSGCCQVTVPLGYY----DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQ 473 (554)
Q Consensus 398 l~G~PaisvP~g~~----~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 473 (554)
+-|+|++.=|-... ..+.-.+ ....+...+..+.+.+...+.+.-... .-+.++.++|..
T Consensus 208 ~~G~pV~C~r~mevAalVsaiNpsi---~~~tDs~el~~lQq~LLWlLyd~Ghl~-------------~YPmALgnLgDL 271 (489)
T 4gq4_A 208 LKGSYMRCDRKMEVAFMVCAINPSI---DLHTDSLELLQLQQKLLWLLYDLGHLE-------------RYPMALGNLADL 271 (489)
T ss_dssp GGGCCEECCHHHHHHHHHHTCCCEE---ETTEECHHHHHHHHHHHHHHHHHTTTT-------------TCHHHHHHHHHH
T ss_pred eCCceeeecCcchHHHHHhhcCccc---ccCccHHHHHHHHHHHHHHHHhccchh-------------hcchhhhcccCH
Confidence 46888876553221 2222222 233345667777777776666544321 234566666655
Q ss_pred HHHc--cCHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 474 AYKD--KQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 474 ~~~~--g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
--.. .....++..|++||.. +-.+...|..+|-+++..++|.+|++.+.++-..
T Consensus 272 Eei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 272 EELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp HHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 4332 2223467888888874 3345667888899999999999999999876543
No 295
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=40.08 E-value=59 Score=32.60 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=38.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcC--C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC
Q 008755 471 GNQAYKDKQWLKAISFYTEAIKLNG--N--------NATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKN 531 (554)
Q Consensus 471 g~~~~~~g~~~~A~~~~~~al~~~p--~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~ 531 (554)
-..||+.++..-+...++..=.... . ....+|.+|..++..++|.+|.+++.+|++. .|..
T Consensus 183 ~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 183 NNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3456777777777666643221111 1 1346677777777777888888888888777 5543
No 296
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=40.04 E-value=35 Score=24.74 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 493 (554)
......+|..+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 445567788888999999999999998864
No 297
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=39.99 E-value=47 Score=35.21 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008755 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 548 (554)
Q Consensus 499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~ 548 (554)
+.....|...+..|+|.-|.+.+++++..+|+|.++...++.+|.++|.-
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 44566778888899999999999999999999999999999999888753
No 298
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=39.57 E-value=2.6e+02 Score=26.63 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755 530 KNVKAYLRRGTAREMLGYYKEAIE 553 (554)
Q Consensus 530 ~~~~~~~~~g~~~~~~~~~~~A~~ 553 (554)
.+++.+..+|..|...+++.+|..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHH
Confidence 467788888888888888888853
No 299
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=39.20 E-value=85 Score=23.60 Aligned_cols=58 Identities=9% Similarity=-0.078 Sum_probs=42.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCH----H--HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----T--YYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 468 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~--~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
+..|..+|+.|+|=+|-+.++..-...|+.. . +....|..+.+.|+. |...+.+++..
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 4568889999999999999999887775421 1 223344555577888 99999998873
No 300
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=36.93 E-value=80 Score=23.40 Aligned_cols=29 Identities=7% Similarity=0.005 Sum_probs=22.8
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYT 488 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 488 (554)
.-+.+..|++.|..++..|++..|+.++.
T Consensus 35 ~l~mA~~Y~~Da~~fl~kGD~v~Ala~is 63 (87)
T 2pmr_A 35 VVERALNYRDDSVYYLEKGDHITSFGCIT 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34677888888888888888888887764
No 301
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.05 E-value=96 Score=29.30 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Q 008755 508 YLESGSFLQAEADCTKAINLDKK 530 (554)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~ 530 (554)
.++.++|..|....++.|++.|.
T Consensus 208 a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 208 FFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC
Confidence 45889999999999999999885
No 302
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.04 E-value=93 Score=35.42 Aligned_cols=79 Identities=15% Similarity=0.049 Sum_probs=55.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------
Q 008755 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---------------------- 527 (554)
Q Consensus 470 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---------------------- 527 (554)
+...+++.+.++-+.+ .+...|.++...+.+|.+|+..|++++|.++++++-.-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3445666677766554 34557778777899999999999999999999886311
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755 528 -DKKNVKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 528 -~p~~~~~~~~~g~~~~~~~~~~~A~ 552 (554)
.......|+.....+.+.+.++.++
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 0112345666677777878777665
No 303
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=32.47 E-value=32 Score=25.65 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=11.0
Q ss_pred cCHHHHHHHHHHHHHhcC
Q 008755 478 KQWLKAISFYTEAIKLNG 495 (554)
Q Consensus 478 g~~~~A~~~~~~al~~~p 495 (554)
..|++|..+..++|+.|.
T Consensus 11 ~~h~~AF~~Is~aL~~DE 28 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDE 28 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 445666666666666653
No 304
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.97 E-value=1.4e+02 Score=29.49 Aligned_cols=69 Identities=7% Similarity=-0.020 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 529 (554)
....+.++..-..++..++|..+...++|+-.+.. .+. ......|..+...++|.+|...|-.++....
T Consensus 165 ~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 165 GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 35677888888999999999999999999876522 122 2445567777889999999999988877643
No 305
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=37.49 E-value=10 Score=40.39 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 008755 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516 (554)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~ 516 (554)
.+....++...+.+|+|.-|.+..+.++..+|++.++...++.+|.+++.-.+
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 45567778888999999999999999999999999999999999988875443
No 306
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=30.81 E-value=49 Score=24.00 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 501 YSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 501 ~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
...+|.=|..+|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345777788999999999999999875
No 307
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.31 E-value=75 Score=24.95 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 492 (554)
+.+..+.+.|...=..|+.++|+.+|++.|+
T Consensus 20 ~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 20 KKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 3455566666666666888888887777664
No 308
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=30.30 E-value=2.8e+02 Score=31.08 Aligned_cols=65 Identities=3% Similarity=-0.125 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC
Q 008755 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLD 528 (554)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~ 528 (554)
+...|..+-..+.+.|+.++|++.|++..+. .| +...|+.+-.++.+.|+ .++|.+.+++..+..
T Consensus 164 dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 5678999999999999999999999998765 45 46778888889999998 478899999988764
No 309
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=29.98 E-value=1.1e+02 Score=30.50 Aligned_cols=29 Identities=17% Similarity=-0.034 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 498 ATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
..++..+|.+|+.+++|++|++.++++|.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45777888888888999999999988885
No 310
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.74 E-value=91 Score=31.22 Aligned_cols=38 Identities=18% Similarity=0.036 Sum_probs=34.0
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cCCC
Q 008755 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNN 497 (554)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~ 497 (554)
..+....+|..|..++.+++|.+|.+++.+|++. .|..
T Consensus 216 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 216 LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3477888999999999999999999999999998 7755
No 311
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=29.06 E-value=1.4e+02 Score=21.32 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (554)
Q Consensus 502 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 534 (554)
..+|..+...|++++|..++-+|+...|.-.+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 357888889999999999999999998875544
No 312
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=28.50 E-value=1.2e+02 Score=30.68 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 498 ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..++..+|.+|+.+++|++|++.+++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 457788899999999999999999998865
No 313
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=27.36 E-value=1.2e+02 Score=30.22 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755 498 ATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (554)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 526 (554)
..++..+|.+|+.+++|++|++.++++|.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45777888888888899999988888876
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.02 E-value=97 Score=34.47 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c--------------------C
Q 008755 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN-L--------------------D 528 (554)
Q Consensus 470 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l--------------------~ 528 (554)
+...+...+.++-|.+ .+..-|.++-.-|-+|.+|+.+|++++|..++++|-. + .
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 4556677788876543 4566778877789999999999999999999987541 1 1
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHh
Q 008755 529 KKN--VKAYLRRGTAREMLGYYKEAI 552 (554)
Q Consensus 529 p~~--~~~~~~~g~~~~~~~~~~~A~ 552 (554)
++. ...|+.....+.+.+.++-++
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi 917 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDAL 917 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHH
Confidence 111 224555677777777777654
No 315
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=24.59 E-value=1.3e+02 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755 498 ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (554)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 527 (554)
..++..+|.+|+.+++|++|++.++++|..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 457777888888888999999998888864
No 316
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.62 E-value=1.2e+02 Score=23.27 Aligned_cols=31 Identities=10% Similarity=0.017 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 491 (554)
..+++.....+....+.|+|++|...++++=
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3577778888999999999999999998764
No 317
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=22.26 E-value=1.2e+02 Score=23.32 Aligned_cols=31 Identities=23% Similarity=0.080 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 491 (554)
..+++.....+....+.|+|++|...++++=
T Consensus 17 aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 17 AGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3677788888999999999999999998774
No 318
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=20.45 E-value=2.9e+02 Score=23.05 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=45.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVKAYLRRGTAREM 544 (554)
Q Consensus 468 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~p~~~~~~~~~g~~~~~ 544 (554)
+..++..|-..+|.+.+..+++ .+|+ .....|.+|..|.+..++. +-.......+.+..+ -.+.+=+++..
T Consensus 12 ~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---e~yL~YWIyiG 85 (161)
T 2ynq_A 12 YIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---EQYMLYWIYIG 85 (161)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---HHHHHHHHHHc
Confidence 3456677777788777777655 2333 3456677777777776643 223333333333322 12333356667
Q ss_pred cCCHHHHhc
Q 008755 545 LGYYKEAIE 553 (554)
Q Consensus 545 ~~~~~~A~~ 553 (554)
.|++++|+.
T Consensus 86 Rg~~~eAlD 94 (161)
T 2ynq_A 86 RSQSEEALE 94 (161)
T ss_dssp HTCHHHHHH
T ss_pred CCchHHHHH
Confidence 777777753
No 319
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.42 E-value=1.4e+02 Score=23.18 Aligned_cols=31 Identities=16% Similarity=-0.056 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008755 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491 (554)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 491 (554)
..+++.....+....+.|+|++|...++++=
T Consensus 19 aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 19 SGNARSFAMEALQFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567778888888999999999999998774
No 320
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=20.31 E-value=71 Score=23.77 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHc---cCHHHHHHHHHHHHH
Q 008755 462 QSAEIAKEKGNQAYKD---KQWLKAISFYTEAIK 492 (554)
Q Consensus 462 ~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~ 492 (554)
+.+..+.+.|...=.. |+-++|+.+|++.|+
T Consensus 14 ~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 14 KQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 3455666666666666 777778888777663
Done!