RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008755
(554 letters)
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 537 bits (1384), Expect = 0.0
Identities = 239/421 (56%), Positives = 303/421 (71%), Gaps = 16/421 (3%)
Query: 33 DFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR 92
D+GAF+EK L P PL GL+FAV D+FD+EGYVTGFG+P+WARTHSAA+
Sbjct: 6 DYGAFMEKFVL----SPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATS 61
Query: 93 TSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA 152
T+ V ++ GGATC+GKT++DE AYSING N HY TPTNP AP ++PGGSSSG+AVAV
Sbjct: 62 TAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVG 121
Query: 153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
A LVDFSLG DT G VRVP+++CGI GFRPS+GAVS +G+IP++ S DTVGWFARDP IL
Sbjct: 122 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVIL 181
Query: 213 RHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGR-QVLKHEN 271
+ VGHVLLQ P P QIIIA+DCF+L IP DR+VQV++KS EKLFG ++KH N
Sbjct: 182 KRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHVN 241
Query: 272 LGEYFDSKVPSLKGF-HKTNGE----------LKNVMRLIQRYEFKNNHNEWIESVKPAL 320
LG+Y + KVPSLK F K E L + MRL+QRYEFK NH EWI +VKP
Sbjct: 242 LGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEF 301
Query: 321 DPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380
P IS I E + +E I+ C+S++ E+R+A+++LL + G+LV PT PPPKL
Sbjct: 302 GPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPT 361
Query: 381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440
E ++ RAFSLLSIA VSG CQV++PLG +D P SVS +A+HG D FLL+ V+++Y +
Sbjct: 362 TLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYGT 421
Query: 441 L 441
+
Sbjct: 422 I 422
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 362 bits (932), Expect = e-121
Identities = 153/412 (37%), Positives = 208/412 (50%), Gaps = 26/412 (6%)
Query: 34 FGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT 93
F AFI K PLP A PL GL FAV D+FD+ GYVTG G+P+W A+RT
Sbjct: 7 FNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRT 61
Query: 94 STVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153
+ V L+ GA +GKT DE A+S+NG N HY TP NPAAP ++PGGSSSG+A AVA
Sbjct: 62 APAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAG 121
Query: 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 213
L DF+LG DT G VR P++FCG+ G RP++G +S G++P++ S DTVGWFARD +L
Sbjct: 122 GLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLE 181
Query: 214 HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 273
VG VLL ++++I D F LL ++ + G
Sbjct: 182 RVGEVLLGDDAQEFPLTQRLLIPVDLFALLDPAVRAALEAALARLRPHLG---------- 231
Query: 274 EYFDSKVPSLKGFHKTNGELK---NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGE 330
K L R++Q E H WI S P L P ++
Sbjct: 232 --------PAKPASVPPLSLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAA 283
Query: 331 MLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAF 390
E++ +E ++ R +++LL D +L+ PT P G E Y+ RA
Sbjct: 284 GAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERAL 343
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442
LL IA ++G Q+++PL D P +S I G DR LL Q + A+
Sbjct: 344 RLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLALAQTIAAARS 395
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 215 bits (550), Expect = 1e-63
Identities = 112/392 (28%), Positives = 168/392 (42%), Gaps = 24/392 (6%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
PL G+ AV D D G T G A +TVV L GA +GKT +DEF
Sbjct: 73 PLAGVPIAVKDNIDTAGLPTTAGSK--ALEDYVPPYDATVVERLRAAGAVILGKTNMDEF 130
Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
A + N + NP ++PGGSS G+A AVAA LV +LG DT G +R+P+AFCG
Sbjct: 131 AMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCG 190
Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHV--GHVLLQLPFAAQRSPR 231
++G +P+YG VS G++P+++SLD +G AR D +L V G P
Sbjct: 191 LVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVP 250
Query: 232 QIIIADDCFELLKI--PADRVVQVVI-KSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHK 288
+ D + L+I P + + F V E G L
Sbjct: 251 PALAGKD-LKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDY 309
Query: 289 TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI--GEMLEISETVIE--NCKS 344
+RY + + + ++ P++ I G L +S + ++
Sbjct: 310 ALAAYYLARFDGERYGLRAA-DLYGKTRAEGFGPEVKRRIMLGTYL-LSAGYYDAYYRRA 367
Query: 345 IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSED----YQNRAFSLLSIASVSG 400
+ +R A L ++ +L+TPTT P PK+G E +D Y F A+++G
Sbjct: 368 QKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVF--TVPANLAG 425
Query: 401 CCQVTVPLGYYDKC-PTSVSFIARHGGDRFLL 431
++VP G+ P + I D LL
Sbjct: 426 LPAISVPAGFTADGLPVGLQLIGPAFDDATLL 457
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 189 bits (483), Expect = 2e-54
Identities = 108/404 (26%), Positives = 167/404 (41%), Gaps = 47/404 (11%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
PL G+ ++ D D++G T G A +TVV L GA +GKT +DEF
Sbjct: 46 PLHGVPISLKDNIDVKGVPTTAGSK--ALEGYPPPYDATVVERLRAAGAVILGKTNMDEF 103
Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
A N + NP S+ PGGSS G+A AVAA LV ++G DT G +R+P+AFCG
Sbjct: 104 AMGSTTENSAFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCG 163
Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---------------DPKILRHVGHVLLQ 221
++G +P+YG VS G++P S+SLD VG AR DP +
Sbjct: 164 LVGLKPTYGRVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPD 223
Query: 222 LPFAAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDS 278
++S + + I +D + L R V+ + E L G +V E
Sbjct: 224 FAEPLKKSLKGLRIGVPREDFYFSLDPEVQRAVRKAAAALEAL-GHEV--VEVEPPSLKH 280
Query: 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISA--EIGEMLEISE 336
+P N+ L + Y L ++ E+G +
Sbjct: 281 ALPLYYIIAPAEA-SSNLSDLDELYP---------RIRDELLGDEVKRRIELGAYALSAG 330
Query: 337 TVIENCKS---IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL 393
+R +R + L ++ +L++PTT P P+LG ++ L
Sbjct: 331 YSGAYYLKAQKVRRLLRREFAGLFEELDVLLSPTTPTPAPRLG---EAADSPTVLYNLLD 387
Query: 394 SI-----ASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFLL 431
A+++G +++P G+ D P + I G D LL
Sbjct: 388 FTANTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 159 bits (404), Expect = 6e-43
Identities = 77/184 (41%), Positives = 99/184 (53%), Gaps = 5/184 (2%)
Query: 53 KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
+ PL G+ FAV +LFD+ G T G + R A+R +T V L GA +G
Sbjct: 67 EPLGPLAGVPFAVKNLFDVAGLTTLAG-SKINRDRPPATRDATAVRRLEAAGAVLVGALN 125
Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
+DE+AY N HY NP +++ GGSS G+A AVAA LV F+LG DT G +RVP+
Sbjct: 126 MDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPA 185
Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLPFAAQR 228
+ CGI G +P+YG +S G P SLD +G FAR L V VL Q PF A R
Sbjct: 186 SLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADR 245
Query: 229 SPRQ 232
Sbjct: 246 PAEP 249
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 157 bits (400), Expect = 2e-42
Identities = 108/419 (25%), Positives = 178/419 (42%), Gaps = 64/419 (15%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
PL G+ AV D +G VT + AS+ +TV+ L + GA
Sbjct: 55 PLAGIPIAVKDNISTKGIVT-----------TCASKILENYIPPYDATVIERLKQAGALI 103
Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
IGKT +DEFA + + NP ++PGGSS G+A AVAADL FSLG DT G
Sbjct: 104 IGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGS 163
Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLP 223
+R P++FCG++GF+P+YG VS G++ ++SLD +G FAR + + + V+ +
Sbjct: 164 IRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDS 223
Query: 224 FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLK-HENLGEYFDSKVPS 282
+A+ + FE LK + V+K + ++V + EN E +
Sbjct: 224 TSAKVPDPEF------FEELKKDLKGLKVGVVKEFSEEMDKEVQEKFENALEVLEELGAE 277
Query: 283 LKGFHKTNGELKNVM---RLIQRYEFKNNH---------------NEWIESVKPALDPDI 324
+ +K + +I E +N N E
Sbjct: 278 IVEVSF--PHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGF 335
Query: 325 SAE------IGEML---EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKL 375
E +G + + +R + L ++ ++V+PT P K+
Sbjct: 336 GEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKI 395
Query: 376 GGKEMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDK-CPTSVSFIARHGGDRFLLD 432
G E L + + +L++ A+++G ++VP G +K P + I + D+ LL
Sbjct: 396 G--EKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQ 452
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 154 bits (392), Expect = 2e-41
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 7/160 (4%)
Query: 53 KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSA-ASRTSTVVSTLVEGGATCIGKT 111
AP PL G+ +V DLFD+ G VT G + A+ + V+ L GA IG+T
Sbjct: 67 AAPSPLAGIPVSVKDLFDVAGQVTRAGSR--VLADAPPAAADAPAVARLRRAGAVLIGRT 124
Query: 112 VVDEFAYSINGTNKHYDTPTNPAA----PSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
+ EFA+S G N HY TP NP ++PGGSSSGAAV+VA + +LG DT G
Sbjct: 125 NMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGS 184
Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
+R+P+A CG+ GF+P+ V G +P+ST+LD++G AR
Sbjct: 185 IRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLAR 224
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 153 bits (388), Expect = 6e-41
Identities = 114/404 (28%), Positives = 171/404 (42%), Gaps = 60/404 (14%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
L G+ A DLFD+ G VT G A + ASR + VV+ L G IG+T + EF
Sbjct: 69 LLDGIPIAWKDLFDVAGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEF 127
Query: 117 AYSINGTNKHYDTPTNPAAPSQ--MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
A+S G N HY TP NP + +PGGSSSG+AVAVAA LV ++G DT G VR+P+AF
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187
Query: 175 CGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR--------DPKILRHVGHVLLQLPFAA 226
G++G++ + G S G+ P++ SLD++G R D + +++ P A
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAG 247
Query: 227 QR--SPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLK 284
R P ++ D E P V + E+L L P+ +
Sbjct: 248 LRLVVPETVV--FDDAE----PG--VRAAFEAAVERLQAAGALVER-------QAFPAFQ 292
Query: 285 GFHKTNGELKNVMRLIQRY------EFKNNHNEWIESVKPA-LDPDISA--EIGEMLEIS 335
++ LI R+ E H E ++ A +DP + +G + S
Sbjct: 293 E----------ILDLIARHGWLVTAEAFALHQERLDGPDAARMDPRVVKRTRLGRKITAS 342
Query: 336 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQ------NRA 389
+ + R + + ++ L +L TPT A+ P L L D +
Sbjct: 343 DYI--ALLEARERLIAQVTREL-GGALLATPTVAHVAPPLAP---LEADDDLFFATNLKT 396
Query: 390 FSLLSIASVSGCCQVTVPLGYYDK-CPTSVSFIARHGGDRFLLD 432
+ C V++P G P + A G D LL
Sbjct: 397 LRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLR 440
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 150 bits (381), Expect = 6e-40
Identities = 70/155 (45%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 53 KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
PL G+ FAV +LFD+ G T G + R + A R +T+V L GA +G
Sbjct: 60 SPLGPLAGVPFAVKNLFDVAGLTTLAG-AKINRDLAPAKRDATLVQRLSAAGAVLVGALN 118
Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
+DEFAY N HY NP +++ GGSS G+A AVAA LV FSLG DT G +RVP+
Sbjct: 119 MDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPA 178
Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
+ CG+ G +P+YG +S G+ P SLD VG FAR
Sbjct: 179 SLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFAR 213
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 146 bits (371), Expect = 2e-38
Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 20/161 (12%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
PL G+ A+ D +G T + AS+ +TVV L GA
Sbjct: 55 PLAGIPIAIKDNICTKGIRT-----------TCASKILENYVPPYDATVVEKLKAAGAVI 103
Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
+GKT +DEFA + N + NP ++PGGSS G+A AVAA L +LG DT G
Sbjct: 104 LGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGS 163
Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
+R P+AFCG++G +P+YG VS G+I ++SLD +G FAR
Sbjct: 164 IRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFART 204
Score = 31.2 bits (72), Expect = 1.5
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 345 IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGK-----EMLSEDYQNRAFSLLSI-ASV 398
+R ++ + +++ PT K+G K M D + ++ A++
Sbjct: 366 VRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAMYLSD-------IFTVPANL 418
Query: 399 SGCCQVTVPLGYYDKC-PTSVSFIARHGGDRFLLDT 433
+G ++VP G+ D P + I ++ + LL+
Sbjct: 419 AGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNV 454
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 146 bits (371), Expect = 1e-37
Identities = 74/181 (40%), Positives = 95/181 (52%), Gaps = 8/181 (4%)
Query: 33 DFGAFIEKL---QLLPPPQPLPPKAPH--PLTGLSFAVSDLFDIEGYVTGFGHPEWARTH 87
D +I LL L + P PL G+ FAV D D+ G T P +A T
Sbjct: 39 DPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAACPAFAYT- 97
Query: 88 SAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147
R +TVV+ L GA IGKT +D+FA + GT Y N P + GGSSSG+
Sbjct: 98 --PERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGS 155
Query: 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
AVAVA LV F+LG DT G RVP+AF I+G +P+ G +S G++P +LD V FA
Sbjct: 156 AVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFAL 215
Query: 208 D 208
Sbjct: 216 T 216
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 144 bits (365), Expect = 5e-37
Identities = 76/211 (36%), Positives = 103/211 (48%), Gaps = 16/211 (7%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
PL G+ FAV D D+ G T P +A T +TVV+ L GA +GKT +D+F
Sbjct: 31 PLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PEEDATVVALLRAAGAIVVGKTNLDQF 87
Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
A + GT Y N P+ + GGSSSG+AVAVA LV F+LG DT G RVP+A
Sbjct: 88 ATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNN 147
Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARD----PKILRHVGHVLLQLPFAAQRSPRQ 232
I+G +P+ G VS G++P SLD V FA ++LR + P++
Sbjct: 148 IVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAA 207
Query: 233 IIIADDCFELLKIPADRVVQVVIKSTEKLFG 263
L + P V V + + FG
Sbjct: 208 ---------LRRFPPPPRVGVPRAAQLEFFG 229
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 130 bits (328), Expect = 6e-33
Identities = 63/151 (41%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
PL G ++ DLFD+ G T G R A + +V L GA IGKT + EF
Sbjct: 45 PLDGRIVSIKDLFDVAGEPTLAGSV-IRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEF 103
Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
A++ G N HY P N P+++PGGSSSGAAV+VA + ++G DT G VR+P+A G
Sbjct: 104 AFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNG 163
Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
++GF+P+ + G P+S SLD++G AR
Sbjct: 164 LVGFKPTARRIPLEGAFPLSPSLDSIGPLAR 194
Score = 44.0 bits (104), Expect = 1e-04
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 6/139 (4%)
Query: 309 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 368
H +W+ + +D + + +++ R + A+ L + P T
Sbjct: 287 HADWLADLDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPAT 346
Query: 369 AYPPPKLGGKEMLSEDYQNRAFSLL----SIASVSGCCQVTVPLGYYDKCPTSVSFIARH 424
P + E+Y +R +LL +A+ C +T+P+ P + AR+
Sbjct: 347 PIVAPTIASVSEDEEEY-DRVENLLLRNTQVANQFDLCSITLPMPGM-ALPAGLMLTARN 404
Query: 425 GGDRFLLDTVQNMYASLQE 443
G DR LL ++ L+
Sbjct: 405 GSDRRLLAAAASVEKLLEH 423
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 128 bits (324), Expect = 5e-32
Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Query: 54 APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVV 113
A L G+ + D + G T G P A + VV L++ GA +GK +
Sbjct: 70 AALLLAGVPIVIKDNINTAGMPTTAGTPALLG-FVPA-TDAPVVQRLLDAGAVPLGKANM 127
Query: 114 DEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSA 173
E A+ I N + NP P+++ GGSS G A AVAA L LG DT G VR+P+A
Sbjct: 128 HELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAA 187
Query: 174 FCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
CG++G RP+ G S G++PIS + DTVG AR
Sbjct: 188 LCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIAR 221
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 114 bits (287), Expect = 3e-27
Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 91 SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVA 150
S +TVV L+ GA + K DE G + NP S++ GGSSSG+A A
Sbjct: 68 SYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSA-A 126
Query: 151 VAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR--- 207
+ F++G DT VR+P++F G +GF+PSYGA+S G+ ++SLDTV +F
Sbjct: 127 TFNKNISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVN 186
Query: 208 DPKILRHV 215
D IL V
Sbjct: 187 DAIILSKV 194
Score = 30.4 bits (69), Expect = 2.4
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 343 KSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCC 402
K +R +++ S+ I++ P A P + E S++Y + +L+I+++ G
Sbjct: 338 KKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYMD---YILTISNLVGNP 394
Query: 403 QVTVPLGYYDKCPTSVS 419
+++PLG Y+ P +++
Sbjct: 395 SLSIPLGKYNNLPFNLA 411
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 105 bits (263), Expect = 6e-24
Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 91 SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT-NPAAPSQMPGGSSSGAAV 149
S +TVV+ L++ GAT +GK ++ +S G++ P NP P GGSSSG+A
Sbjct: 119 SFDATVVTRLLDAGATIVGKATCEDLCFS-GGSHTSDPGPVHNPRDPGYSAGGSSSGSAA 177
Query: 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
VAA VD ++G D G +R+PSA+CGI G +P++G V + G PI ++D +G
Sbjct: 178 LVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTA 235
Score = 37.3 bits (87), Expect = 0.022
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 342 CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---V 398
+++ +R+A L+ +LV PTT L + E+Y +RA +++ + V
Sbjct: 399 ARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDV 458
Query: 399 SGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
+G ++VP G D P + + RH + +L
Sbjct: 459 TGHPAMSVPCGLVDGLPVGLMLVGRHFDEATIL 491
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 101 bits (254), Expect = 5e-23
Identities = 105/414 (25%), Positives = 161/414 (38%), Gaps = 60/414 (14%)
Query: 55 PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVD 114
PL G+ A+ D D+ G VT +G A AA+ + VV L GA IGKT V
Sbjct: 70 RLPLLGVPIAIKDDVDVAGEVTTYGS---AGHGPAATSDAEVVRRLRAAGAVIIGKTNVP 126
Query: 115 EFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
E + + NP P++ PGGSS G+A AVAA L +LG D G +R+PS +
Sbjct: 127 ELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTW 186
Query: 175 CGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHVGHVL--LQLPF--AAQ 227
CG+ G +P +S L G AR D +L + + F AA
Sbjct: 187 CGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEFVAAAA 246
Query: 228 RSPRQIIIADDCFELLKIPADRVVQV------VIKSTEKL---FGRQVLKHENLGEYFDS 278
R P ++ IA ++P V+ + L G V+ + +Y
Sbjct: 247 REPGRLRIALS----TRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVVRDP--DYPA- 299
Query: 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETV 338
+ + L R I H + +E+ A+ A +G S+
Sbjct: 300 --ATYANY------LPRFFRGISDDADAQAHPDRLEARTRAI-----ARLGSF--FSDRR 344
Query: 339 IENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAF--SLLSIA 396
+ ++ + + I S+ D ++VTP TA P ++G YQ R +LL +
Sbjct: 345 MAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIGA-------YQRRGAVSTLLLVV 397
Query: 397 SVSGCCQV---------TVPLGY-YDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440
QV VP + D P SV + R + LL + ++
Sbjct: 398 QRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 90.5 bits (225), Expect = 5e-22
Identities = 36/89 (40%), Positives = 51/89 (57%)
Query: 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524
E GN YK + +A+ +Y +A++L+ +NA Y N AAAY + G + +A D KA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 525 INLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ LD N KAY G A LG Y+EA+E
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALE 89
Score = 47.8 bits (114), Expect = 6e-07
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
YK ++ +A+ Y +A++L+ +NA Y N AY + G + +A KA+ LD
Sbjct: 45 YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 98.6 bits (246), Expect = 6e-22
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
PL G+ V + F++ G T +G P+ R + A + V+ L GA +GKT V
Sbjct: 75 PLLGIPVTVKESFNVAGLPTTWGFPDL-RDYVPA-EDAVAVARLKAAGAVILGKTNVPLG 132
Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
N+ Y T NP ++ PGGSS G+A A+AA S+G D G +RVP+ +CG
Sbjct: 133 LQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCG 192
Query: 177 ILGFRPSYGAVSHMGIIP 194
+ +P+ G V G IP
Sbjct: 193 VYAHKPTLGLVPLRGHIP 210
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 95.9 bits (239), Expect = 5e-21
Identities = 62/194 (31%), Positives = 81/194 (41%), Gaps = 21/194 (10%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
L G+ A DL +G T G P +A + VV + GA IGKT EF
Sbjct: 77 WLHGMPQAPKDLAPTKGIRTTLGSPIFA--DQVPQEDAIVVERMRAAGAIFIGKTNTPEF 134
Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
+ N Y NP PS+ GGSS GAA A+A ++ + G D +G +R P+AF
Sbjct: 135 GLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNN 194
Query: 177 ILGFRPSYGAVSH----------------MG--IIPISTSLDT-VGWFARDPKILRHVGH 217
+ GFRPS G V H MG + ++ L G+ RDP L
Sbjct: 195 VYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDPLSLAEDPA 254
Query: 218 VLLQLPFAAQRSPR 231
Q A R R
Sbjct: 255 RFAQPLEADLRGKR 268
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 95.9 bits (239), Expect = 5e-21
Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA---SRTSTVVSTLVEGGATCIGKTVV 113
L G+ ++ D+F G+ T G +R A + V+ L E GA +GKT
Sbjct: 71 LLDGVPVSIKDIFLTRGWPTLRG----SRAIDADGPWDVDAPAVARLREAGAVLLGKTTT 126
Query: 114 DEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSA 173
EF + + Y NP GGSS GAA AVA + S+G D G VR+P++
Sbjct: 127 PEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPAS 186
Query: 174 FCGILGFRPSYGAV-----SHMGII----PISTS-------LDTVGWF-ARDPKIL 212
FCG GF+P++G V S G + P++ + LD + ARD L
Sbjct: 187 FCGTFGFKPTFGRVPLYPASPFGTLAHVGPMTRTVADAALLLDVIARPDARDWSAL 242
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 90.6 bits (225), Expect = 3e-19
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 8/157 (5%)
Query: 57 PLTGLSFAVSDLFD-IEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDE 115
PL G+ + D D + T G A + +R + +V+ L + GA +GK + E
Sbjct: 72 PLHGIPVLLKDNIDAADPMPTTAG--SLALAGNRPTRDAFLVARLRDAGAVILGKANLSE 129
Query: 116 FA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRV 170
+A S +G + NP A + P GSSSG+ AVAA L ++G +T G +
Sbjct: 130 WANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITC 189
Query: 171 PSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
P+A G++G +P+ G VS GI+PIS S DT G R
Sbjct: 190 PAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTR 226
Score = 31.7 bits (72), Expect = 1.0
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 352 AISSLLKDDGI--LVTPTT--AYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 407
I + LK+ + LV PTT A+ + G + A+V+G +TVP
Sbjct: 398 GIDAALKEHRLDALVAPTTGPAWLIDLINGDSFGGSSS--------TPAAVAGYPHLTVP 449
Query: 408 LGYYDKCPTSVSFI 421
+G P +SFI
Sbjct: 450 MGQVQGLPVGLSFI 463
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 88.8 bits (220), Expect = 1e-18
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 90 ASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT------NKHYDTPTNPAAPSQM-PGG 142
A + +T+V L E GA +GK + E+A ++ T K NP P + G
Sbjct: 168 ADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQN-LNPYGPIKFDTSG 226
Query: 143 SSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV 202
SSSG+A VAAD ++G +T G + P+A ++G RPS G VS GIIP++ +LDT
Sbjct: 227 SSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTA 286
Query: 203 GWFARDPK 210
G AR K
Sbjct: 287 GPMARTVK 294
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 77.4 bits (191), Expect = 8e-18
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEAD 520
+AE K GN +K + +AI Y +A++L+ +NA Y N A AYL+ G + +A D
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 521 CTKAINLDK 529
KA+ LD
Sbjct: 61 LEKALELDP 69
Score = 53.1 bits (128), Expect = 3e-09
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-YKEAIE 553
+NA N A + G + +A KA+ LD N +AY A LG Y+EA+E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 85.6 bits (212), Expect = 1e-17
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 84 ARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFA----------YSINGTNKHYDTPTNP 133
A +S + +V+ L E GA +GK + E A YS G P
Sbjct: 105 ALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTI--NPYGT 162
Query: 134 AAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII 193
GGSS+G+A+AVAA+ S+G +T G + P+ ++G +P+ G +S GII
Sbjct: 163 GEDDMFVGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGII 222
Query: 194 PISTSLDTVGWFAR---DPKIL 212
P + S DT G FAR D IL
Sbjct: 223 PFTYSQDTAGPFARTVTDAAIL 244
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 83.2 bits (206), Expect = 7e-17
Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
PL G+ AV D D+ G T FG A+ S VV L GA +GKT E
Sbjct: 81 PLLGVPIAVKDDVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNTCEL 137
Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
+ + NP + PGGSS G+A AVAA LV ++G D G VR+P+A+
Sbjct: 138 GQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTH 197
Query: 177 ILGFRPSYGAVS 188
++G +P G +S
Sbjct: 198 LVGIKPQRGRIS 209
Score = 28.9 bits (65), Expect = 7.8
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 311 EWIESVKPALDPD----ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTP 366
+W E + + D +A +G +L S+ ++ ++ + + S+ +++ P
Sbjct: 331 DWAERLGDPVLLDPRTVSNARMGRLL--SQAILRLARAAEAAAQRRVGSIFDIVDVVLAP 388
Query: 367 TTAYPPPKLG 376
TTA PPP++G
Sbjct: 389 TTAQPPPRVG 398
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 78.9 bits (195), Expect = 2e-15
Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 17/184 (9%)
Query: 55 PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVD 114
P PL G+ V D G+ T G A S VV L + GA IG+T
Sbjct: 70 PGPLAGVPVTVKVNVDQAGFATTNGVRLQK--DLIAPADSPVVDNLRKAGAVIIGRTNTP 127
Query: 115 EFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
F+Y N + NP PS PGGSS GAA AVAA + + G D G +R P+
Sbjct: 128 AFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYA 187
Query: 175 CGILGFRPSYGAV-------SHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ 227
CG+ G RP+ G V I S + P + R V + L L A
Sbjct: 188 CGVHGLRPTLGRVPAYNASSPERPIGAQLMS-------VQGP-LARTVADLRLALAAMAA 239
Query: 228 RSPR 231
PR
Sbjct: 240 PDPR 243
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 75.0 bits (184), Expect = 3e-14
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
E +I S + + +K+ A KEKGN+AY++K + KAI Y++AI+ +
Sbjct: 103 PADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPV 161
Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
YYSNRAA + G + + D T A+ LD KA RR A + LG Y +A+
Sbjct: 162 YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214
Score = 40.0 bits (93), Expect = 0.003
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
KA + +A+KLN + Y +RA + G F QA D K+I+LD + ++++ G
Sbjct: 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442
Query: 542 REMLG 546
+ G
Sbjct: 443 QYKEG 447
Score = 31.5 bits (71), Expect = 1.4
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540
L+A++ +++I+L+ Y RA+ LE G +AE D KA+ L+ ++ Y R
Sbjct: 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407
Query: 541 AREMLGYYKEA 551
+ G + +A
Sbjct: 408 LHFIKGEFAQA 418
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 74.3 bits (182), Expect = 5e-14
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 94 STVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMPGGSSSGAA 148
+T+V L GA +GKT + E+A + NG + NP + + P GSSSG+A
Sbjct: 264 ATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSA 323
Query: 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
A +D ++G +T G + P++ +G++PS G V++ GIIP+S+ DT G R
Sbjct: 324 TAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTR 382
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 72.1 bits (177), Expect = 1e-13
Identities = 38/88 (43%), Positives = 55/88 (62%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
A+ ++K +A+ D + A+ YT+AI L+ NNA Y++RA A ++ G+F +A AD K
Sbjct: 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEA 551
AI LD KAYLR+GTA L Y+ A
Sbjct: 62 AIELDPSLAKAYLRKGTACMKLEEYQTA 89
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 72.7 bits (179), Expect = 1e-13
Identities = 34/88 (38%), Positives = 48/88 (54%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFS 159
L E GA + KT + ++ +G + + NP Q PGGSS+GA A AA
Sbjct: 112 LREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLH 171
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAV 187
LG D G VR+P+ +CGI+G +PS G +
Sbjct: 172 LGTDIGGSVRLPAGWCGIVGLKPSLGRI 199
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 69.6 bits (171), Expect = 1e-12
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 27/193 (13%)
Query: 46 PPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGA 105
+P +G+ + D D+ G T G W A S + G
Sbjct: 64 AARPGSQGGF--FSGVPTFIKDNVDVAGLPTMHGSDAWTPR--PAKADSDFARQFLATGL 119
Query: 106 TCIGKTVVDEFAYSINGTNKHYD-TPT-NPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
+GKT + EF +S + +H P NP G SS G+A VAA +V + D
Sbjct: 120 ISLGKTQLPEFGFS--ASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHAND 177
Query: 164 TVGGVRVPSAFCGILGFRPSYG------AVSHMGIIPIS------TSLDTVGWFA----- 206
G +R+P+A CG++G +PS G + + + ++ T DT ++
Sbjct: 178 GGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERY 237
Query: 207 -RDPKILRHVGHV 218
R+PK L +G V
Sbjct: 238 YRNPK-LPPIGDV 249
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 61.8 bits (150), Expect = 4e-10
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 87 HSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTN-PAAPSQMPGGSSS 145
+ A++T V L + G +G++ EF + N ++ P N P S+ GGSS
Sbjct: 91 NYQATKTDLYVKRLEDLGFIILGRSNTPEFGFK-NISDSSLHGPVNLPFDNSRNAGGSSG 149
Query: 146 GAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV 187
GAA V++ +V + D G +R+P++F G++G +PS G +
Sbjct: 150 GAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRI 191
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 57.9 bits (140), Expect = 7e-09
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
PL G+ + D + ++G G P + A R + + L GA C+GKT +
Sbjct: 75 PLDGIPYTAKDSYLVKGLTAASGSPAFK--DLVAQRDAFTIERLRAAGAICLGKTNMPPM 132
Query: 117 AYSINGTNK--HY---DTPTNPA---APSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGV 168
A NG + Y ++P N A AP GSS+GA A AA F L +T
Sbjct: 133 A---NGGMQRGVYGRAESPYNAAYLTAP--FASGSSNGAGTATAASFSAFGLAEETWSSG 187
Query: 169 RVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
R P++ G+ + PS G +S G P++ ++D V +AR
Sbjct: 188 RGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYAR 226
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only].
Length = 291
Score = 53.7 bits (127), Expect = 7e-08
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEA 519
+ AE G ++ +A+ +A+KLN ++ A N YL+ G + +A
Sbjct: 164 NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
KA+ LD N +A LG Y+EA+E
Sbjct: 224 YYEKALELDPDNAEALYNLALLLLELGRYEEALE 257
Score = 47.5 bits (111), Expect = 8e-06
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 4/137 (2%)
Query: 421 IARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW 480
+ + LL + L + + + AE G ++
Sbjct: 52 LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111
Query: 481 LKAISFYTEAIKLNGNNATYYSNRA-AAYLESGSFLQAEADCTKAINLDKKN---VKAYL 536
+A+ +A+ L+ + + A A E G + +A KA+ LD + +A L
Sbjct: 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171
Query: 537 RRGTAREMLGYYKEAIE 553
G E LG Y+EA+E
Sbjct: 172 ALGALLEALGRYEEALE 188
Score = 38.7 bits (88), Expect = 0.005
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 10/134 (7%)
Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 489
LL+ + L E A+ + + A + K + +A+ +
Sbjct: 25 LLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK 84
Query: 490 AIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--------KNVKAYLRRG 539
A++ L N A N G + +A KA+ LD + A G
Sbjct: 85 ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144
Query: 540 TAREMLGYYKEAIE 553
E L Y++A+E
Sbjct: 145 DYEEALELYEKALE 158
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat.
Length = 65
Score = 37.3 bits (87), Expect = 0.001
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A A L +G + +A A A+ +A L G A G EA
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAA 52
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/60 (18%), Positives = 19/60 (31%)
Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
A + + +A++ A+ A A L G +A A A+ D
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 37.0 bits (86), Expect = 0.002
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTAREMLGYYKE 550
A +N A G + +A KA+ L ++ +A LG Y E
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 551 AIE 553
A+E
Sbjct: 65 ALE 67
Score = 36.6 bits (85), Expect = 0.003
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQ 516
A + + +A+ +A++L + A +N A YL G + +
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 517 AEADCTKAINLDKK 530
A KA+ L +
Sbjct: 65 ALEYLEKALALREA 78
>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase
[Carbohydrate transport and metabolism].
Length = 389
Score = 39.7 bits (93), Expect = 0.003
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 489
LLD ++++ L ++ + A + +Q I + ++W KAI
Sbjct: 122 LLDRAEDIFNQLVDEGEFAEGAL--------QQLLNIYQ-------ATREWEKAIDVAER 166
Query: 490 AIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544
+KL G A +Y A L S +A KA+ DKK V+A + G
Sbjct: 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226
Query: 545 LGYYKEAIE 553
G Y++A+E
Sbjct: 227 KGDYQKAVE 235
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 34.7 bits (81), Expect = 0.004
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
A N AYL+ G + +A KA+ LD N
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 30.9 bits (71), Expect = 0.10
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497
AE GN K + +A+ +Y +A++L+ NN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat.
Length = 34
Score = 34.5 bits (80), Expect = 0.005
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
Y +A++L+ NNA Y N A L G + +A
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
Score = 32.9 bits (76), Expect = 0.016
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
KA+ LD N +AY LG Y EA++
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 34.3 bits (80), Expect = 0.005
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
A N AYL+ G + +A KA+ L+ N
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 29.7 bits (68), Expect = 0.22
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497
A+ GN K ++ +A+ +Y +A++LN NN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 37.8 bits (88), Expect = 0.016
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535
+ + +AI+ + A+ L+ ++ S AYL G F +A KA LD +N A
Sbjct: 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAAR 400
Query: 536 LRRGTAREMLGYYKEAIE 553
+ G ++ G EAI
Sbjct: 401 TQLGISKLSQGDPSEAIA 418
Score = 35.8 bits (83), Expect = 0.060
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 13/117 (11%)
Query: 441 LQEQADIATKSKLSTNTFNQK------QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
Q ++A KS + + A++A + +A + E + +
Sbjct: 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD-------EARALIDEVLTAD 189
Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
N + L G+ A A KAI L N+ L T G ++EA
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
Score = 35.8 bits (83), Expect = 0.065
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
A + GN+ +A+++ +A +LN A YL G +A A +
Sbjct: 540 AGLYLRTGNEE-------EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A + + +A+L G A+ G +A+
Sbjct: 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622
Score = 30.8 bits (70), Expect = 2.4
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 3/124 (2%)
Query: 431 LDTVQNMYASLQEQA-DIATKSKLSTNTFNQKQ-SAEIAKEKGNQAYKDKQWLKAISFYT 488
Q A L A + K++ + Q +A + +G+ + K + AI Y
Sbjct: 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727
Query: 489 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 548
+A+K ++ A L SG+ +A + + Y
Sbjct: 728 KALKRAPSSQN-AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786
Query: 549 KEAI 552
+AI
Sbjct: 787 DKAI 790
Score = 30.4 bits (69), Expect = 2.8
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
Q +A + G KA + +A+ + + +N A ++ G+ A
Sbjct: 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
Query: 519 ADCTKAINLDKKNVKA-------YLRRGTAREMLGYYKEAIE 553
K + +D KN++A YLR G E + + ++A E
Sbjct: 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561
Score = 30.1 bits (68), Expect = 3.9
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA------- 534
KA + +A +L+ NA + + L G +A AD A LD + +A
Sbjct: 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440
Query: 535 YLRRG 539
YLR G
Sbjct: 441 YLRSG 445
Score = 29.7 bits (67), Expect = 5.4
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 461 KQSAEIAKEKGNQAY--KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
EI Y Q KA++ EA ++ + A L +G +A
Sbjct: 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621
Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ K + L + A L A ++ Y +AI
Sbjct: 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656
Score = 28.9 bits (65), Expect = 7.9
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 490 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA--INLDKKNVKAYLRRGTAREMLGY 547
A++ + N+A YL G + AE + KA + K V L R A + G
Sbjct: 48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLAR--AYLLQGK 105
Query: 548 YKEAIE 553
+++ ++
Sbjct: 106 FQQVLD 111
Score = 28.9 bits (65), Expect = 8.6
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
A++ Y +AI L NN A +E+G F +AE + + A+ +
Sbjct: 212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271
Query: 543 EMLGYYKEAIEG 554
Y++A E
Sbjct: 272 FQKKNYEDARET 283
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 31.7 bits (73), Expect = 0.044
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
A N AY + G + +A KA+ LD N
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 31.3 bits (72), Expect = 0.065
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497
AE G YK + +A+ Y +A++L+ NN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.
Length = 389
Score = 35.6 bits (83), Expect = 0.056
Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 22/130 (16%)
Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAY-KDKQWLKAISFYT 488
LLD + ++ L ++ D A + Q EI Y ++K W KAI
Sbjct: 122 LLDRAEELFLQLVDEGDFAEGALQ--------QLLEI--------YQQEKDWQKAIDVAE 165
Query: 489 EAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543
KL G++ A +Y A L G A A KA+ D + V+A + G
Sbjct: 166 RLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL 225
Query: 544 MLGYYKEAIE 553
G Y AIE
Sbjct: 226 AQGDYAAAIE 235
>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones].
Length = 287
Score = 34.3 bits (79), Expect = 0.13
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 483 AISFYTEAIKLNGNNATYYSNRAAA-YLESGSFLQAEAD--CTKAINLDKKNVKA--YLR 537
A+ Y A++L G+N A A Y ++G + A+A +A+ LD N++A L
Sbjct: 175 ALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL- 233
Query: 538 RGTAREMLGYYKEAIE 553
A G Y EA
Sbjct: 234 -AFAAFEQGDYAEAAA 248
>gnl|CDD|223054 PHA03359, PHA03359, UL17 tegument protein; Provisional.
Length = 686
Score = 34.6 bits (80), Expect = 0.16
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 292 ELKNVMRLIQR--YEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM 349
L+ RL Q Y+ +WI +I+ ++LE I+N +S
Sbjct: 488 ALQTEPRLSQLIEYDIPPRQRDWIT--------EIARRAPDLLEALLRAIQN-ESAEEFS 538
Query: 350 RSA-----ISSL-----LKDDGILVTPTTAYPPPKLGGKEMLSEDY 385
SA ++ L V A GG ++ DY
Sbjct: 539 NSALMSAVLAHLAARSTRGRGRGYVPYHRASLARLAGGDDVYLFDY 584
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 33.2 bits (76), Expect = 0.25
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 489
L T + + KS ++ E+ +G ++ + +A+S +
Sbjct: 71 KLATALYLRGDADSSLAVLQKSAIAYPK-----DRELLAAQGKNQIRNGNFGEAVSVLRK 125
Query: 490 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535
A +L + ++ AA + G F +A +A+ L
Sbjct: 126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 33.4 bits (77), Expect = 0.33
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 268 KHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALD------ 321
+ L E D K + ++ + + K + VK A++
Sbjct: 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA------KKVKAAIEELQAEF 374
Query: 322 PDISAEIGEMLEISETVIENCKSIRNE--MRSAISSLLKDDGI 362
D + E+ ++ + + +++ + E R ++ LLKD GI
Sbjct: 375 VDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGI 417
>gnl|CDD|214020 cd12955, SKA2, Spindle and kinetochore-associated protein 2. SKA2,
also called FAM33A, is a component of the SKA complex,
which is formed by the association of three subunits
(SKA1, SKA2, annd SKA3). The SKA complex is essential
for accurate cell division. It functions with the Ndc80
network to establish stable kinetochore-microtubule
interactions, which are crucial for the highly
orchestrated chromosome movements during mitosis. The
biological unit is a W-shaped homodimer of the
three-subunit complex. SKA2 has also been identified as
a glucocorticoid receptor-interacting protein and may be
involved in regulating cancer cell proliferation.
Length = 116
Score = 30.9 bits (70), Expect = 0.57
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 286 FHKTNGELKNVMRLIQRYEFKNNHNEWIESVKP--------ALDPDISAEIGEMLEISET 337
F K +L + R ++ EFK N E P A+ S + EI +
Sbjct: 8 FQKAESDLDYIQRRLE-SEFKENSPESAGEKNPVELLERLSAIKSRYSTLCAQAEEIKKA 66
Query: 338 VIENCKSIRNEMRSAISSLLK 358
E+ SIR ++ A+ L +
Sbjct: 67 QKESVSSIRAQLHKAMQLLQE 87
>gnl|CDD|217958 pfam04197, Birna_RdRp, Birnavirus RNA dependent RNA polymerase
(VP1). Birnaviruses are dsRNA viruses. This family
corresponds to the RNA dependent RNA polymerase. This
protein is also known as VP1. All of the birnavirus VP1
proteins contain conserved RdRp motifs that reside in
the catalytic "palm" domain of all classes of
polymerases. However, the birnavirus RdRps lack the
highly conserved Gly-Asp-Asp (GDD) sequence, a component
of the proposed catalytic site of this enzyme family
that exists in the conserved motif VI of the palm domain
of other RdRps.
Length = 855
Score = 32.5 bits (74), Expect = 0.66
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 16/79 (20%)
Query: 305 FKNNH-------NEWIESVKPALDPDISAEIGEMLEIS---ETVIENCK-SIRNEMRSAI 353
F NNH +W E+ KP ++ I+ E I+N + + + +A
Sbjct: 485 FLNNHLLSTIVVAKWSEAGKPNPMSKEFMDLEAKTGINFKIEREIKNLREKLIEAVETAP 544
Query: 354 SSLLKDDGILVTPTTAYPP 372
G L P
Sbjct: 545 -----QTGYLSDGVELPPE 558
>gnl|CDD|225583 COG3041, COG3041, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 91
Score = 29.6 bits (67), Expect = 0.87
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 24 KKLKKNIKQDFGAFIEKLQLLPPPQPLPPK-APHPLTG 60
KKL K D + + LL PLPP+ HPLTG
Sbjct: 15 KKLIKRGPLDMDKLKKVITLLANDLPLPPRYKDHPLTG 52
>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 250
Score = 31.6 bits (72), Expect = 0.87
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-------YYKE 550
A A YL+ G + QA+ + KA+ D A+L R + LG Y++
Sbjct: 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94
Query: 551 AI 552
A+
Sbjct: 95 AL 96
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein
PilW. Members of this family are designated PilF in ref
(PMID:8973346) and PilW in ref (PMID:15612916). This
outer membrane protein is required both for pilus
stability and for pilus function such as adherence to
human cells. Members of this family contain copies of
the TPR (tetratricopeptide repeat) domain.
Length = 234
Score = 31.5 bits (72), Expect = 0.88
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-------YYKEAI 552
A YLE G A+ + KA+ D + AYL + LG ++ A+
Sbjct: 38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL 92
>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3;
Provisional.
Length = 172
Score = 30.0 bits (68), Expect = 1.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497
E A+E G+Q + + KA ++ +AI+L NN
Sbjct: 121 EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153
>gnl|CDD|182415 PRK10370, PRK10370, formate-dependent nitrite reductase complex
subunit NrfG; Provisional.
Length = 198
Score = 30.3 bits (68), Expect = 1.9
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 483 AISFYTEAIKLNGNNATYYSNRAAA-YLESGSFL--QAEADCTKAINLDKKNVKAYLRRG 539
A+ Y +A++L G NA Y+ A Y ++G + Q KA+ LD V A +
Sbjct: 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151
Query: 540 TAREMLGYYKEAIE 553
+ M Y +AIE
Sbjct: 152 SDAFMQADYAQAIE 165
>gnl|CDD|129163 TIGR00053, TIGR00053, addiction module toxin component, YafQ
family. This model represents a cluster of eubacterial
proteins and a cluster of archaeal proteins, all of
which are uncharacterized, from 85 to 102 residues in
length, and similar in sequence. These include YafQ, a
ribosome-associated endoribonuclease that serves as
part of a toxin-antitoxin system, for which DinJ is the
antidote component [Cellular processes, Adaptations to
atypical conditions].
Length = 89
Score = 28.6 bits (64), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 24 KKLKKNIKQDFGAFIEKLQLLPPPQPLPPK-APHPLTG 60
KKL K +D +K++ L PLP HPL G
Sbjct: 15 KKLVKRNGKDLKKLYKKMEELINELPLPEHYKDHPLRG 52
>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional.
Length = 388
Score = 30.4 bits (69), Expect = 2.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 136 PSQMPGGSSSGAAVAVAADLVDFSLGIDTVG 166
PS M S++G+ + V DLV S+GI+ V
Sbjct: 346 PSAMTHASTAGSQLEVPDDLVRLSVGIEDVA 376
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 30.3 bits (68), Expect = 3.1
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 265 QVLKHENLGEYFDSKVPSLKGFH-KTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD 323
+K ++ + ++++ L+G+ N LK++ + + IE ++
Sbjct: 340 DYIKKKSRYDDLNNQILELEGYEMDYNSYLKSI----------ESLKKKIEEYSKNIE-R 388
Query: 324 ISAEIGEMLEISETVIENCKSIRNEMRSAI 353
+SA I E+L+I E + K NE+ +
Sbjct: 389 MSAFISEILKIQEIDPDAIKKELNEINVKL 418
>gnl|CDD|153316 cd07632, BAR_APPL2, The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor
protein, Phosphotyrosine interaction, PH domain and
Leucine zipper containing 2. BAR domains are
dimerization, lipid binding and curvature sensing
modules found in many different proteins with diverse
functions. Adaptor protein, Phosphotyrosine interaction,
PH domain and Leucine zipper containing (APPL) proteins
are effectors of the small GTPase Rab5 that function in
endosome-mediated signaling. They contain BAR,
pleckstrin homology (PH) and phosphotyrosine binding
(PTB) domains. They form homo- and hetero-oligomers that
are mediated by their BAR domains. Vertebrates contain
two APPL proteins, APPL1 and APPL2. Both APPL proteins
interact with the transcriptional repressor Reptin,
acting as activators of beta-catenin/TCF-mediated
trancription. APPL2 is essential for cell proliferation.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 215
Score = 29.2 bits (65), Expect = 4.7
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 439 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 498
AS + +A S+L N+K AE+AKE + KQ L ++ +Y NA
Sbjct: 117 ASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYS--RRKQHLSSLQYYCAL------NA 168
Query: 499 TYYSNRAA 506
Y R A
Sbjct: 169 LQYRKRVA 176
>gnl|CDD|222956 PHA02992, PHA02992, hypothetical protein; Provisional.
Length = 728
Score = 29.3 bits (66), Expect = 6.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 268 KHENLGEY----FDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNH 309
+ E+LG Y FD L + T EL+ + + I RYE ++
Sbjct: 263 RKEDLGVYANIFFDDVAIDLTKYDLTKTELEIICKYIDRYEIYIDY 308
>gnl|CDD|99918 cd05535, POLBc_epsilon, DNA polymerase type-B epsilon subfamily
catalytic domain. Three DNA-dependent DNA polymerases
type B (alpha, delta, and epsilon) have been identified
as essential for nuclear DNA replication in eukaryotes.
DNA polymerase (Pol) epsilon has been proposed to play a
role in elongation of the leading strand during DNA
replication. Pol epsilon might also have a role in DNA
repair. The structure of pol epsilon is characteristic
of this family with the exception that it contains a
large c-terminal domain with an unclear function.
Phylogenetic analyses indicate that Pol epsilon is the
ortholog to the archaeal Pol B3 rather than to Pol
alpha, delta, or zeta. This might be because pol epsilon
is ancestral to both archaea and eukaryotes DNA
polymerases type B.
Length = 621
Score = 28.8 bits (65), Expect = 8.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 301 QRYEFKNNHNEWIESVKPALDPDISAEI 328
+RYE+K H W + ++ A +AEI
Sbjct: 234 RRYEYKGLHKVWKKKLEAAKAAGDAAEI 261
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0867 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,265,646
Number of extensions: 2779446
Number of successful extensions: 3330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3272
Number of HSP's successfully gapped: 106
Length of query: 554
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 452
Effective length of database: 6,413,494
Effective search space: 2898899288
Effective search space used: 2898899288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.4 bits)