RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008755
(554 letters)
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 176 bits (448), Expect = 7e-50
Identities = 91/386 (23%), Positives = 148/386 (38%), Gaps = 37/386 (9%)
Query: 53 KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
+A PL G++ + D+ D T G + + VV L GAT IGKT
Sbjct: 49 QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPR--SDAPVVMMLKRAGATIIGKTT 106
Query: 113 VDEFAYSINGTNKHYDTPT-NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVP 171
FA T T NP PGG+SSG+A AV A ++ +LG T G V P
Sbjct: 107 TTAFASR------DP-TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRP 159
Query: 172 SAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLPFAAQ 227
+A+CG +PS+ + +G+ S +LDTVG F + L +
Sbjct: 160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPA 219
Query: 228 RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH 287
++PR ++ + ++ A++ +Q IK+ E+ G V + L E
Sbjct: 220 KAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERA-GASVQAID-LPEAVHEAWR------ 271
Query: 288 KTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRN 347
+ +IQ +E + P + A + + ++ + + I
Sbjct: 272 --------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGR 323
Query: 348 EMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 407
R + + + +L+T + P + NR ++L+ G V VP
Sbjct: 324 RGRRELGEVFEGVDVLLTYSAPGTAPAKAL-ASTGDPRYNRLWTLM------GNPCVNVP 376
Query: 408 LGYYDKCPTSVSFIARHGGDRFLLDT 433
+ P V IAR G D L T
Sbjct: 377 VLKVGGLPIGVQVIARFGNDAHALAT 402
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 150 bits (381), Expect = 1e-43
Identities = 38/92 (41%), Positives = 52/92 (56%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
AE A+ +G + + W A+ YTE IK +A YSNRAAA + SF +A ADC
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
KAI D V+AY+R+ TA+ + Y A+E
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALE 93
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 148 bits (377), Expect = 5e-43
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
A + K KGN+ ++ + +A+ YTEAIK N +A YSNRAA Y + F A D
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
C + I L+ +K Y R+ A E + Y +A++
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMD 105
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 148 bits (376), Expect = 8e-43
Identities = 35/95 (36%), Positives = 54/95 (56%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
+ SA+ KE+GN+ + +++ +A + Y AI N A YY+NRA YL+ QA
Sbjct: 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63
Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
ADC +A+ LD ++VKA+ G + + Y EAI
Sbjct: 64 ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA 98
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 149 bits (377), Expect = 1e-42
Identities = 39/94 (41%), Positives = 56/94 (59%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A
Sbjct: 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 68
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
D T+AI LDKK +K Y RR + LG ++ A+
Sbjct: 69 DATRAIELDKKYIKGYYRRAASNMALGKFRAALR 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 147 bits (374), Expect = 1e-42
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
+ A+ K KGN+ +K + A+ Y EA+K + NA YSNRAA + F +A D
Sbjct: 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69
Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
C I LD K +K Y+R+ + + +A
Sbjct: 70 CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQR 102
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 156 bits (398), Expect = 2e-42
Identities = 61/164 (37%), Positives = 79/164 (48%), Gaps = 19/164 (11%)
Query: 53 KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR--------TSTVVSTLVEGG 104
+ PL GL V DLF ++G T A ++ + V L E G
Sbjct: 60 QVRGPLHGLPLTVKDLFPVKGMPT-----------RAGTKAPLPPLPEEARAVRRLREAG 108
Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
A KT + E A I G N N PS+ GGSS G+AVAVA + SLG DT
Sbjct: 109 ALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDT 168
Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
G +R+P+ F G++GF+PSYG VS G +P+S S D G R
Sbjct: 169 GGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRS 212
Score = 34.5 bits (80), Expect = 0.080
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 362 ILVTPTTAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP 415
L+ P P P LG +E+ +L S+ G + +P + P
Sbjct: 350 ALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLP--FSLLGVPTLALPFAKVEGMP 407
Query: 416 TSVSFIARHGGDRFLL 431
+ + +G D +L
Sbjct: 408 VGLQVVGAYGEDGKVL 423
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 146 bits (370), Expect = 4e-42
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ KEKGN+A A+ Y+EAIKL+ +N YSNR+AAY + G + +A D
Sbjct: 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
K ++L K Y R+ A E L ++EA
Sbjct: 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 93
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 143 bits (364), Expect = 3e-41
Identities = 38/94 (40%), Positives = 53/94 (56%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
AE K +GN+ K + + A+ FY +AI+LN NA Y+ NRAAAY + G++ A
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
DC +AI +D KAY R G A L + EA+
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA 101
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 143 bits (363), Expect = 1e-40
Identities = 37/98 (37%), Positives = 50/98 (51%)
Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515
+ ++ K +GN A K++ KAI YT+A+ + N Y SNRAAAY SG
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62
Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A D A +D K KA+ R G AR + YK A E
Sbjct: 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKE 100
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 139 bits (353), Expect = 2e-39
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNA 498
+ S E +++GN+ +K + A++ YT+A+ L+ + A
Sbjct: 6 SGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA 65
Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ NRAA +L+ + +AE + +KAI D +VKA RR A E LG +A+
Sbjct: 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 143 bits (363), Expect = 3e-39
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
SA+ KE+GN+ + +++ +A + Y AI N A YY+NRA YL+ QA ADC
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A+ LD ++VKA+ G + + Y EAI
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIA 93
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 145 bits (367), Expect = 9e-38
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
LTG A+ D + G SRT +TVV+ L+ GAT
Sbjct: 87 VLTGRRVAIKDNVTVAGVPM-----------MNGSRTVEGFTPSRDATVVTRLLAAGATV 135
Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
GK V ++ +S + NP + GGSS G+A VA VDF++G D G
Sbjct: 136 AGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGS 195
Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
+R+P+AFCG++G +P++G V + G PI ++D +G R
Sbjct: 196 IRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRT 236
Score = 36.1 bits (84), Expect = 0.030
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 362 ILVTPTTAYPPPKLGGK-----EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPT 416
+LV PT Y +L K +++ A + V+G ++VP G + P
Sbjct: 419 VLVMPTLPYVASELPAKDVDRATFITKALGMIANTA--PFDVTGHPSLSVPAGLVNGLPV 476
Query: 417 SVSFIARHGGDRFLL 431
+ RH D +L
Sbjct: 477 GMMITGRHFDDATVL 491
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 134 bits (340), Expect = 1e-37
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ A KE GN AYK K + A+ Y +A +L+ N TY +N+AA Y E G + + C
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 522 TKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIE 553
KAI + ++N KAY R G + YK+AI
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 132 bits (333), Expect = 5e-37
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
E KE+GN +K + +A+ Y + I N YSN+A A ++ G + QA C
Sbjct: 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 522 TKAINLDKKNVKAYLRR------GTAREMLGYYKEAIE 553
+ + +R A+ +G + +
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 131 bits (332), Expect = 1e-36
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
+A K+ GN AYK K + KA Y +AI+L+ +N T+Y+N+AA Y E F +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 520 DCTKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIE 553
C KA+ + ++ KA R G A + A++
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 140 bits (356), Expect = 2e-36
Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 24/169 (14%)
Query: 53 KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAAS--------RTSTVVSTLVEGG 104
+ PL G+ + D + T SA S + +V L + G
Sbjct: 73 RLRGPLHGIPLLLKDNINAAPMAT-----------SAGSLALQGFRPDDAYLVRRLRDAG 121
Query: 105 ATCIGKTVVDEFA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFS 159
A +GKT + E+A SI+G + NP S P GSSSG+AVAVAA+L +
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
+G +T G + P+A G++G +P+ G VS GIIPIS S DT G AR
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARS 230
Score = 41.4 bits (98), Expect = 6e-04
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 363 LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIA 422
LV PTT P + S A+V+G +TVP+G D P + F+
Sbjct: 413 LVAPTTGVAWPIRSEG-------DDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMG 465
Query: 423 RHGGDRFLLDTVQNMYASLQEQA 445
+ L++ A EQ
Sbjct: 466 TAWSEPKLIE-----MAYAYEQR 483
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 139 bits (352), Expect = 7e-36
Identities = 73/421 (17%), Positives = 132/421 (31%), Gaps = 65/421 (15%)
Query: 57 PLTGLSFAVSDLFD-IEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDE 115
P G+ + + DL +G + + A + V + G +GKT E
Sbjct: 63 PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122
Query: 116 FAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFC 175
+ + + NP + GGSS G+ AVAA L + G D G VR+P++ C
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182
Query: 176 GILGFRPSYGAVSHMGIIPISTSLD----------TV-----------GWFARDPKILRH 214
G++G +P+ G +S ++ S ++ +V G D
Sbjct: 183 GVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPT 242
Query: 215 VGHVLLQLPFAAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHEN 271
Q +P + + + D +
Sbjct: 243 ASRPYAQ---GISENPGSLRVGVLTHNPVG--DFALDPECAAAARGAAAAL-------AA 290
Query: 272 LG---EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD-ISAE 327
LG + + F K I E + L D +
Sbjct: 291 LGHDVNDAYPEALGDRSFLKD-------YSTICDVAIAREIERNGELIGRPLTEDDVEWT 343
Query: 328 IGEMLE----ISETVIENCKSIRNEMRSAISSLLKDDG-ILVTPTTAYPPPKLG------ 376
EM++ ++ C + + +L+ PT P++G
Sbjct: 344 SWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAK 403
Query: 377 --GKEMLSEDYQNRAFSLL---SIASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFL 430
E + + + +L +VSG +++P+G D P V +A +G + L
Sbjct: 404 GTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLL 463
Query: 431 L 431
L
Sbjct: 464 L 464
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 132 bits (335), Expect = 1e-33
Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 20/165 (12%)
Query: 53 KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEG 103
+ L G+ + D G T + AS+ STV+ L +
Sbjct: 66 QMDGKLFGIPMGIKDNIITNGLET-----------TCASKMLEGFVPIYESTVMEKLHKE 114
Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
A IGK +DEFA + ++ NP +PGGSS G+A AVAA LV SLG D
Sbjct: 115 NAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSD 174
Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
T G +R P+A+CG++G +P+YG VS G++ ++SLD +G R+
Sbjct: 175 TGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRN 219
Score = 28.7 bits (65), Expect = 6.4
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 362 ILVTPTTAYPPPKLGGK-----EMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDKCP 415
++V PT LG + M + D LL+ +++G ++VP G + P
Sbjct: 398 VVVGPTAPTTAFNLGEEIDDPLTMYAND-------LLTTPVNLAGLPGISVPCGQSNGRP 450
Query: 416 TSVSFIARHGGDRFLL 431
+ FI + ++ L
Sbjct: 451 IGLQFIGKPFDEKTLY 466
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 131 bits (332), Expect = 3e-33
Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 20/161 (12%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEGGATC 107
PL GL AV D G T +A SR +T V+ L GA
Sbjct: 57 PLAGLVVAVKDNIATRGLRT-----------TAGSRLLENFVPPYEATAVARLKALGALV 105
Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
+GKT +DEF + + + NP P ++PGGSS G+A A+AADL +LG DT G
Sbjct: 106 LGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGS 165
Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
VR P+AFCG+ G +P+YG VS G+I ++SLD +G AR
Sbjct: 166 VRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARS 206
Score = 30.2 bits (69), Expect = 2.2
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 362 ILVTPTTAYPPPKLGGK----EMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDKCPT 416
+L+ PTT +P G + M ED L ++ A+++G ++ P G+ P
Sbjct: 381 LLLLPTTPHPAFPFGARRDPLAMYRED-------LYTVGANLTGLPALSFPAGFEGHLPV 433
Query: 417 SVSFIARHGGDRFLL 431
+ +A G D LL
Sbjct: 434 GLQLLAPWGEDERLL 448
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 130 bits (330), Expect = 5e-33
Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 20/161 (12%)
Query: 57 PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEGGATC 107
PL G+ AV D +EG T + AS+ +TV+ L + GA
Sbjct: 63 PLFGIPIAVKDNILVEGEKT-----------TCASKILENFVAPYDATVIERLKKAGALI 111
Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
+GKT +DEFA + + NP ++PGGSS G+A +VA SLG DT G
Sbjct: 112 VGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGS 171
Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
+R P++FCG++G +P+YG VS G++ ++SLD +G F R
Sbjct: 172 IRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRR 212
Score = 29.0 bits (66), Expect = 4.8
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 362 ILVTPTTAYPPPKLGGK-----EMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDKCP 415
++ +PTT P K G + EM D +L++ A+++G +++P+ + D P
Sbjct: 391 VIASPTTPTLPFKFGERLENPIEMYLSD-------ILTVPANLAGLPAISIPIAWKDGLP 443
Query: 416 TSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLS 454
I +H + LL + +++ K L+
Sbjct: 444 VGGQLIGKHWDETTLL----QISYLWEQKFKHYEKIPLT 478
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 130 bits (330), Expect = 6e-33
Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 20/165 (12%)
Query: 53 KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEG 103
+ G+ A+ D G T + ASR +TVV + E
Sbjct: 54 EKKGKFWGIPVAIKDNILTLGMRT-----------TCASRILENYESVFDATVVKKMKEA 102
Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
G +GK +DEFA + + NP ++PGGSS G+A AV+A +V +LG D
Sbjct: 103 GFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSD 162
Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
T G VR P++ CG++G++P+YG VS G++ ++SLD +G +
Sbjct: 163 TGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKT 207
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 128 bits (323), Expect = 9e-32
Identities = 73/395 (18%), Positives = 121/395 (30%), Gaps = 43/395 (10%)
Query: 53 KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
L G+ ++ + F +G+ + G + VV L GA T
Sbjct: 123 PRQGLLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTN 180
Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
V + +S + +N + NP S+ PGGSS G + + LG D G +R PS
Sbjct: 181 VPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPS 240
Query: 173 AFCGILGFRPSYGAVSHMGIIP----ISTSLDTVGWFARDPKILRHVGHVLLQ------- 221
AFCGI G +P+ +S G+ + ++G ARD + L LL
Sbjct: 241 AFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLD 300
Query: 222 -----LPF--AAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQV----- 266
LPF RS R + + D + + R + + E G +
Sbjct: 301 PTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAA-GHTLIPFLP 359
Query: 267 LKHENLGEYFDSKVPSLKGFHKTNGELKN--VMRLIQRYEFKNNHNEWIESVKPALDPDI 324
E + G K V + W + + L +
Sbjct: 360 NNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPL 419
Query: 325 SAEIGEMLEISE--TVIENCKSI--RNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGK 378
+ L + + K R ++ + K + L+TP
Sbjct: 420 FPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPG 479
Query: 379 EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDK 413
A S + + VP+
Sbjct: 480 RAT------GAVSYTMLYNCLDFPAGVVPVTTVTA 508
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 116 bits (293), Expect = 8e-31
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI------------------KLNGNNATYYSN 503
+S E ++KGN+ + K + +AI Y +A+ +L+ N Y+N
Sbjct: 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ YL G +AE ++ + ++ N KA RR AR EA E
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 112 bits (283), Expect = 3e-28
Identities = 38/90 (42%), Positives = 52/90 (57%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
AE A+ +G + + W A+ YTE IK +A YSNRAAA + SF +A ADC K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
AI D V+AY+R+ TA+ + Y A+E
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALE 228
Score = 94.5 bits (236), Expect = 5e-22
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
A+ K +GN+ YK +Q+ +AI Y +A +L+ + TY +NRAAA E G + A +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A+ ++ Y + +G +
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLG 93
Score = 76.4 bits (189), Expect = 9e-16
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ Y+ ++ AIS +A++ Y + ++ G+ D K I +
Sbjct: 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
K++ + R L ++ ++
Sbjct: 104 KSLTEH-RTADILTKLRNAEKELK 126
Score = 73.7 bits (182), Expect = 8e-15
Identities = 15/84 (17%), Positives = 25/84 (29%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ K + K + +N A Y + A T+ I
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
++ + Y R A L + EAI
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIA 194
Score = 69.1 bits (170), Expect = 3e-13
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
+ A + +AI+ +AI+ + N Y +A A + + A A D
Sbjct: 179 RAA-ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237
Query: 529 KKNVKAYLRRGTAREMLGYYK 549
+ R + +
Sbjct: 238 AEVNNGSSAREIDQLYYKASQ 258
Score = 68.0 bits (167), Expect = 6e-13
Identities = 5/84 (5%), Positives = 21/84 (25%), Gaps = 1/84 (1%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ + + I+ + T + A + + + ++
Sbjct: 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNP 136
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+ + G + A++
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVK 160
Score = 52.9 bits (128), Expect = 7e-08
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ A + ++ F +A KA L K++ R A G Y+ AI
Sbjct: 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAIS 59
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 114 bits (287), Expect = 1e-27
Identities = 26/92 (28%), Positives = 35/92 (38%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
E E G + Q A+S + A+ + +N Y RA +L G A D
Sbjct: 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
TK I L A L+RG G EA +
Sbjct: 84 TKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 115
Score = 97.8 bits (244), Expect = 5e-22
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 511
+ Q + E + +D ++ A S Y +K + A Y + +
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308
Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
++A C++ + ++ NV A R A + Y EAI+
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350
Score = 85.9 bits (213), Expect = 5e-18
Identities = 17/94 (18%), Positives = 41/94 (43%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
+ + + + A+ + AI+F + +++ +A RA +++ G +A +
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
D A L N +A+ + T LG ++ ++
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232
Score = 73.6 bits (181), Expect = 4e-14
Identities = 16/83 (19%), Positives = 37/83 (44%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ KD++ ++AI +E +++ +N +RA AYL + +A D A ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360
Query: 530 KNVKAYLRRGTAREMLGYYKEAI 552
+ + A+ +L ++
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRD 383
Score = 68.6 bits (168), Expect = 2e-12
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
AE+ + + K+ + KAIS A KL +N + + Y + G + ++
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234
Query: 522 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIE 553
+ + LD+ + + + +++ G Y +A
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278
Score = 65.1 bits (159), Expect = 2e-11
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 15/99 (15%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 514
+G+ K + +A + + +K N + ++A SG +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159
Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A A K + + + + R G ++AI
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
Score = 45.4 bits (108), Expect = 3e-05
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 18/110 (16%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ K++ ++ + +AI Y A + N N+ A + +
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386
Query: 522 TKAINLDKKN---VKAYLR---------------RGTAREMLGYYKEAIE 553
+ + K +KAY + + A + A E
Sbjct: 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 107 bits (270), Expect = 3e-27
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRA 505
QSA KE+GN+ +K + +AI Y EA+ K + N A
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
Y ++ + +A +K + +DK NVKA + G A G+ +EA E
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143
Score = 47.5 bits (113), Expect = 3e-06
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VK 533
K+K + KAI ++ +K++ NN A + G +A+ + KA +L+ N ++
Sbjct: 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159
Query: 534 AYLRR 538
Sbjct: 160 NSYEL 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 113 bits (284), Expect = 6e-27
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
+ AE K + N +K K + AI FY++AI+LN +NA YY NR+ AYL + + A D
Sbjct: 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62
Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
T+AI LDKK +K Y RR + LG ++ A+
Sbjct: 63 ATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 111 bits (280), Expect = 2e-26
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
+ + A K+KGNQ +++K++ AI +Y A++L + +YSN +A Y+ G +
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVE 60
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
TKA+ L K LRR +A E LG + +A+
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94
Score = 91.3 bits (227), Expect = 9e-20
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 14/159 (8%)
Query: 408 LGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKS-------------KLS 454
G + T ++ + D+ L++ + N+Y E D A +S K +
Sbjct: 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227
Query: 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF 514
+ +++ A + G + L A +AI+L Y A +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDS 286
Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ KA+ LD N Y RG +L Y +A +
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325
Score = 88.3 bits (219), Expect = 1e-18
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ----- 516
++ E+ + KA+ Y AI+L Y A ++ +
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429
Query: 517 ----AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A KA LD ++ +A + + EAI
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470
Score = 78.6 bits (194), Expect = 1e-15
Identities = 11/84 (13%), Positives = 28/84 (33%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+G + + + +A + +A +L+ N Y A F E ++A
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+ + + +A++
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALK 393
Score = 77.5 bits (191), Expect = 3e-15
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 474 AYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
D+ + +++ +A+KL+ NN++ Y +R ++ QA D KA LD +N+
Sbjct: 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338
Query: 533 KAYLRRGTAREMLGYYKEAIE 553
Y++ + +
Sbjct: 339 FPYIQLACLAYRENKFDDCET 359
Score = 75.9 bits (187), Expect = 8e-15
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
AY++ ++ + ++EA + + A + F +A AI L+
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 530 KNVKAYLRRGTA---------REMLGYYKEAIE 553
K Y+ + + EA
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436
Score = 69.0 bits (169), Expect = 1e-12
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-AINLD 528
K + T+A++L + + RA+A G F A D + ++N D
Sbjct: 45 LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104
Query: 529 KKN--VKAYLRRGTAREMLGYYKEAIE 553
+ ++ L R ++ + KE
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFG 131
Score = 60.5 bits (147), Expect = 6e-10
Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
+ +++A + +A KL+ + A L+ +A ++ +L + +
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL-- 486
Query: 538 RGTAREMLGYYKEAIE 553
+ ++ I
Sbjct: 487 QAITFAEAAKVQQRIR 502
Score = 53.6 bits (129), Expect = 1e-07
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 12/110 (10%)
Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---- 511
KQ + + + + Y E+ + + SN ES
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208
Query: 512 --------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
F + + L +K + G + + A E
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258
Score = 30.5 bits (69), Expect = 1.6
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE 510
+ + +AI+ + E+ L A
Sbjct: 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA 495
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 108 bits (272), Expect = 5e-26
Identities = 26/90 (28%), Positives = 35/90 (38%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
E E G + Q A+S + A+ + +N Y RA +L G A D TK
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
I L A L+RG G EA +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAED 92
Score = 98.5 bits (246), Expect = 1e-22
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 511
+ Q + E + +D ++ A S Y +K + A Y + +
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285
Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
++A C++ + ++ NV A R A + Y EAI+
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327
Score = 85.0 bits (211), Expect = 5e-18
Identities = 17/94 (18%), Positives = 41/94 (43%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
+ + + + A+ + AI+F + +++ +A RA +++ G +A +
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
D A L N +A+ + T LG ++ ++
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209
Score = 71.5 bits (176), Expect = 1e-13
Identities = 16/81 (19%), Positives = 37/81 (45%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ KD++ ++AI +E +++ +N +RA AYL + +A D A ++
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337
Query: 530 KNVKAYLRRGTAREMLGYYKE 550
+ + A+ +L ++
Sbjct: 338 NDQQIREGLEKAQRLLKQSQK 358
Score = 67.3 bits (165), Expect = 3e-12
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
AE+ + + K+ + KAIS A KL +N + + Y + G + ++
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211
Query: 522 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIE 553
+ + LD+ + + + +++ G Y +A
Sbjct: 212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 255
Score = 64.2 bits (157), Expect = 3e-11
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 15/99 (15%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR---------------AAAYLESGSF 514
+G+ K + +A + + +K N + A + +
Sbjct: 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136
Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A K + + + + R G ++AI
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175
Score = 62.7 bits (153), Expect = 8e-11
Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 16/96 (16%)
Query: 474 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
+ + A+ T+ I L + R L+ G +AE D K + +
Sbjct: 46 VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105
Query: 533 KAY---------------LRRGTAREMLGYYKEAIE 553
+ + Y AI
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141
Score = 60.4 bits (147), Expect = 5e-10
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ + L +G A + A++ D N AY RR T +G K A+
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP 58
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 107 bits (268), Expect = 9e-25
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
++ A K +GN + K + +AI +Y AI+L+ N +YSN +A Y+ +G +
Sbjct: 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79
Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
TKA+ + + KA LRR +A E LG + +A+
Sbjct: 80 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114
Score = 81.7 bits (202), Expect = 1e-16
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
++ +A G + L A E+I L+ +Y A + + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKENSQEFFK 297
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
KA++L+ + Y RG +L YK A E
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331
Score = 79.8 bits (197), Expect = 6e-16
Identities = 17/84 (20%), Positives = 32/84 (38%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ + F+ +A+ LN Y +R Y + A+ D KA +L+
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+NV Y++ G + E+
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEA 365
Score = 75.1 bits (185), Expect = 2e-14
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 18/109 (16%)
Query: 462 QSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAA------------- 507
E+ D+ AI Y A +L +
Sbjct: 376 TLPEVPTFFAE-ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434
Query: 508 ---YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
L+ F A TKA LD ++ +A + + + EAIE
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Score = 74.0 bits (182), Expect = 3e-14
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 473 QAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
Q Y + + A + +A LN N Y A + G F ++EA +
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377
Query: 532 VKAYLRRGTAREMLGYYKEAIE 553
+ G + AI+
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIK 399
Score = 72.1 bits (177), Expect = 2e-13
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 16/100 (16%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
YK ++ ++ +F+ E + A + G F A A L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409
Query: 530 KNVKAYLRRGTA----------------REMLGYYKEAIE 553
K ++ G + + AI+
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Score = 70.1 bits (172), Expect = 7e-13
Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 1/96 (1%)
Query: 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517
+ +S T L N A + + L A
Sbjct: 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262
Query: 518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ ++INL +Y+ +E +
Sbjct: 263 QVLLQESINLH-PTPNSYIFLALTLADKENSQEFFK 297
Score = 65.9 bits (161), Expect = 1e-11
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 482 KAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
+ L+ + A NR + + +F +A AI LD Y
Sbjct: 5 NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64
Query: 538 RGTAREMLGYYKEAIE 553
G ++ IE
Sbjct: 65 ISACYISTGDLEKVIE 80
Score = 64.4 bits (157), Expect = 4e-11
Identities = 10/98 (10%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515
+ + ++++ AI T+A +L+ + A L+
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479
Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A + L + + + T ++ +
Sbjct: 480 EAIELFEDSAILARTMDEKL--QATTFAEAAKIQKRLR 515
Score = 62.8 bits (153), Expect = 1e-10
Identities = 13/132 (9%), Positives = 33/132 (25%), Gaps = 8/132 (6%)
Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQA------YKDKQWLKA 483
+L+ N A +++ + S + + A
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192
Query: 484 ISFYTEAIKLNGNNATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
+ ++A++ + A L + + + T L + A G
Sbjct: 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252
Query: 542 REMLGYYKEAIE 553
+ +A
Sbjct: 253 HFLKNNLLDAQV 264
Score = 60.1 bits (146), Expect = 9e-10
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI---N 526
K I F T+A+++ +++ RA+A G+F A D + +
Sbjct: 65 ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124
Query: 527 LDKKNVKAYLRRGTAREMLGYYKEAIE 553
D +++ L R ++ + E +
Sbjct: 125 FDGASIEPMLERNLNKQAMKVLNENLS 151
Score = 36.2 bits (84), Expect = 0.027
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 512 GSFLQAEADCTKAINLDKKNVK----AYLRRGTAREMLGYYKEAIE 553
GS + E D + L + RG + EAI+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIK 46
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 102 bits (255), Expect = 5e-24
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI---------------KLNGNNATYYSNR 504
+ + + I KE+G +K+ ++ +A+ Y + + K + N
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202
Query: 505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A +L+ +F A C KA+ LD N K RRG A + ++ A
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 251
Score = 47.6 bits (113), Expect = 6e-06
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VK 533
K + + AI +A++L+ NN S R A+L F A AD K + L N K
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267
Query: 534 AYLRR 538
L
Sbjct: 268 TQLAV 272
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 85.5 bits (211), Expect = 2e-18
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----------------YS 502
+ +A+ K GN +K+++ +A+ Y AI G++ + +
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234
Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
N AA ++ + +A C + ++KN KA RRG A+ LG A +
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 82.7 bits (205), Expect = 7e-18
Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
G Q AI Y A+ + Y + + G+F A K I
Sbjct: 80 YGK-ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+ K + G A Y +A
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADS 163
Score = 81.5 bits (202), Expect = 2e-17
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC- 521
+ ++ + +K+ + +AI + + N+ Y+ RA Y E + A+ D
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 522 --TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+N K + G G AI+
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ 95
Score = 77.3 bits (191), Expect = 5e-16
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 464 AEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
++ + G+ + + + AI + + I+ + + AY + +++A++
Sbjct: 108 LDMYGQIGS-YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 523 KAINLDKKNVKAYLRRGTAREMLG----------YYKEAIE 553
K + L YL R A YY++ IE
Sbjct: 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Score = 72.7 bits (179), Expect = 2e-14
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISF---YTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516
+ S I + Y+ ++ A Y + + + ++ G
Sbjct: 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92
Query: 517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A A++ D + Y + G+ G + AI+
Sbjct: 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129
Score = 65.4 bits (160), Expect = 6e-12
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAIN 526
G Y +K+++KA S + + ++L N Y RA A A+ K I
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Query: 527 LDKKN--------VKAYLRRGTAREMLGYYKEAIE 553
+ ++A + +A
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242
Score = 54.6 bits (132), Expect = 2e-08
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 476 KDKQWLKAISFYTEAIKLNGNNATY--------YSNRAAAYLESGSFLQAEADCTKAINL 527
D + A +Y + I++ A Y + ++A+A + L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 528 DKKNVKAYLRRGTAREMLGYY 548
D N KA E ++
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHH 271
Score = 36.5 bits (85), Expect = 0.014
Identities = 4/43 (9%), Positives = 11/43 (25%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG 512
++ +KA + + + L+ N
Sbjct: 227 IAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 79.4 bits (196), Expect = 8e-18
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 12/115 (10%)
Query: 439 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 498
+L + + + E G Y+ +W A + L+ +A
Sbjct: 5 GTLAMLRGL------------SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA 52
Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
Y+ A G + QA + +D + LG A
Sbjct: 53 RYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES 107
Score = 54.0 bits (130), Expect = 5e-09
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531
+ +A+ Y+ ++ N + + A +L+ G AE+ A L
Sbjct: 63 QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122
Query: 532 VKAYLRRGTAREMLGYYKE 550
R G E + K+
Sbjct: 123 EALAARAGAMLEAVTARKD 141
Score = 29.3 bits (66), Expect = 1.6
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS--NRAAAYLES 511
+ A S + A L + + RA A LE+
Sbjct: 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 76.7 bits (189), Expect = 3e-16
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
N + S+++A E K++ + KA FY E ++ NN A + G A
Sbjct: 49 NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108
Query: 519 ADCTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIE 553
K + L+ N+ A + G K+ +E
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144
Score = 75.6 bits (186), Expect = 7e-16
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 16/108 (14%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRA 505
QS + +K + A + Q +A+S++ + I LN + + A
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
AY ++ ++ +A + + NV + G K+A+
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR 109
Score = 69.0 bits (169), Expect = 1e-13
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLD 528
Q A+ Y + ++L +N Y + + K ++
Sbjct: 94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
K A R G ++ Y++A
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARN 178
Score = 49.7 bits (119), Expect = 5e-07
Identities = 6/56 (10%), Positives = 14/56 (25%)
Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
+Q K + + + + L + + +A K I
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
Score = 27.8 bits (62), Expect = 8.5
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 502
G ++ KA + + I + +
Sbjct: 163 DGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 79.9 bits (198), Expect = 3e-16
Identities = 20/92 (21%), Positives = 36/92 (39%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ + + ++ ++ ++ F T AIK N A YSN Y E G +A
Sbjct: 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A+ L + Y+ A G + A++
Sbjct: 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Score = 76.8 bits (190), Expect = 2e-15
Identities = 21/84 (25%), Positives = 32/84 (38%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
GN + Q +AI Y A++L + Y N AAA + +G A A+ +
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
G + LG +EA
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKA 156
Score = 75.7 bits (187), Expect = 5e-15
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
GN K+ + + +A++ Y A+ L+ N+A + N A Y E G A +AI L
Sbjct: 209 LGN-VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
AY A + G EA +
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAED 292
Score = 75.3 bits (186), Expect = 8e-15
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
N A K+K +A Y A++L +A +N A E G+ +A KA+ +
Sbjct: 277 LAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+ A+ + + G +EA+
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALM 360
Score = 74.5 bits (184), Expect = 2e-14
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
Y ++ AI Y AI+L + Y N A A E GS +AE A+ L
Sbjct: 243 LAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+ + + G +EA+
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVR 326
Score = 74.1 bits (183), Expect = 2e-14
Identities = 15/85 (17%), Positives = 32/85 (37%)
Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
E ++ Y+ + A + + +N ++ + + ++ T AI +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+AY G + G +EAIE
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIE 88
Score = 73.0 bits (180), Expect = 4e-14
Identities = 16/84 (19%), Positives = 24/84 (28%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
A+ Y A++ N + S+ G +A+A KAI
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
A+ G G AI
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIH 190
Score = 71.4 bits (176), Expect = 2e-13
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
GN K L +A + Y +AI+ N A +SN + G A KA+ LD
Sbjct: 141 LGN-LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+ AY+ G + + A+
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVA 224
Score = 70.3 bits (173), Expect = 3e-13
Identities = 17/84 (20%), Positives = 30/84 (35%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G + AI + +A+ L+ N Y N E+ F +A A +A++L
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+ + G AI+
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAID 258
Score = 63.3 bits (155), Expect = 6e-11
Identities = 15/77 (19%), Positives = 30/77 (38%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
N + +A+ Y +A+++ A +SN A+ + G +A +AI +
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 530 KNVKAYLRRGTAREMLG 546
AY G + +
Sbjct: 371 TFADAYSNMGNTLKEMQ 387
Score = 52.2 bits (126), Expect = 2e-07
Identities = 8/53 (15%), Positives = 14/53 (26%)
Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A ++G F AE C + + N L + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH 54
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 76.7 bits (189), Expect = 3e-16
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+G A K W A+ ++ + ++ N Y + +AE T++IN DK
Sbjct: 12 EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
AY +RG Y AI+
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIK 92
Score = 67.0 bits (164), Expect = 6e-13
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 16/108 (14%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ I G K +A +T +I + + A Y R Y ++ + A D
Sbjct: 35 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL 94
Query: 522 TKAINLDKKNV----------------KAYLRRGTAREMLGYYKEAIE 553
+A+ + N + +K+A E
Sbjct: 95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142
Score = 45.9 bits (109), Expect = 8e-06
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYS---------------NRAAAYLESGS 513
+G Y+ +++ AI EA+ L GN Y N A Y +
Sbjct: 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136
Query: 514 FLQAEADCTKAINLDKKNVKAYLRR 538
+ +AE A ++ + + + +
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKIDK 161
Score = 42.0 bits (99), Expect = 2e-04
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
++ A N + + A + + + + G +L EA
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAE 57
Query: 553 E 553
+
Sbjct: 58 K 58
Score = 36.6 bits (85), Expect = 0.011
Identities = 7/57 (12%), Positives = 17/57 (29%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516
+ + E+ K ++W KA A + ++A + +
Sbjct: 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE 173
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 77.0 bits (190), Expect = 7e-16
Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 436 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
+ +LQ++ +A + L++ + A++ E+G A + +++A+ +
Sbjct: 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73
Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ ++ ++G+F A + LD A+L RG A G K A +
Sbjct: 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD 132
Score = 69.6 bits (171), Expect = 2e-13
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 1/112 (0%)
Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
++QA K + Q + GN + + + T+ L + +
Sbjct: 160 EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETN 218
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
YL G A A A+ + N + +LG ++ +
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270
Score = 66.9 bits (164), Expect = 2e-12
Identities = 13/84 (15%), Positives = 24/84 (28%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G + + A + ++L+ + NR A G A+ D D
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+ L A + L +
Sbjct: 143 NDPFRSLWLYLAEQKLDEKQAKEV 166
Score = 50.8 bits (122), Expect = 3e-07
Identities = 8/87 (9%), Positives = 19/87 (21%), Gaps = 4/87 (4%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+G Y + A + + N+ A + QA+ +
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKSD 175
Query: 530 KNVKAYLRRGTAREML---GYYKEAIE 553
K + + +
Sbjct: 176 KEQWGWNIVEFYLGNISEQTLMERLKA 202
Score = 43.8 bits (104), Expect = 6e-05
Identities = 7/54 (12%), Positives = 14/54 (25%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
G A + + A+ N +N + G A+ +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 76.4 bits (189), Expect = 7e-16
Identities = 23/83 (27%), Positives = 34/83 (40%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
+ + + KA +T+AI+ N +A Y N A +A A KA+ LD
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89
Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
AY G + YKEA +
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKD 112
Score = 76.0 bits (188), Expect = 9e-16
Identities = 19/84 (22%), Positives = 36/84 (42%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
N + +A++FY +A++L+ + AT Y Y+ + +A+ KA+
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+N + GT L K A+
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALP 146
Score = 74.1 bits (183), Expect = 4e-15
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
G +Q A+ + A++LN N+ G +A + D
Sbjct: 131 LGT-VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+ A+ G ++A+E
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALE 214
Score = 73.7 bits (182), Expect = 5e-15
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
GN Y K+ +A + +A++ N + ++ A +A+ L+
Sbjct: 97 AGN-VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+ + +A + G G EA+
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALS 180
Score = 63.7 bits (156), Expect = 1e-11
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
G + +A+S + + + +A + N Y + +A KAI++
Sbjct: 165 FGM-CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223
Query: 529 KKNVKAYLRRGTAREMLGYY 548
++ A + ++
Sbjct: 224 PDHMLALHAKKLLGHHHHHH 243
Score = 61.4 bits (150), Expect = 9e-11
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL----QAEADCTKAINLDKKNVKAYLR 537
+ + + L + S + GS +A TKAI +K++ Y+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 538 RGTAREMLGYYKEAIE 553
+ + A+
Sbjct: 63 FANLLSSVNELERALA 78
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 75.4 bits (186), Expect = 4e-15
Identities = 13/95 (13%), Positives = 25/95 (26%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
N E E+G K +A + + + + E+ A
Sbjct: 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75
Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A LD K++ + + A+
Sbjct: 76 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALA 110
Score = 68.1 bits (167), Expect = 1e-12
Identities = 11/84 (13%), Positives = 29/84 (34%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G + A + A++L ++A ++ A +A +A++++
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
V+ + + Y A +
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAK 261
Score = 66.2 bits (162), Expect = 6e-12
Identities = 13/84 (15%), Positives = 37/84 (44%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ ++ + + A+++N N+A +++ Y S ++ A A+ +A+ L
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+ + + + G +EA++
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALD 227
Score = 60.0 bits (146), Expect = 6e-10
Identities = 10/85 (11%), Positives = 25/85 (29%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G ++++ AI A L+ + ++ A ++ + A A +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 530 KNVKAYLRRGTAREMLGYYKEAIEG 554
+ + A + E
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSED 145
Score = 54.6 bits (132), Expect = 3e-08
Identities = 8/75 (10%), Positives = 18/75 (24%)
Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
L+ + Y + L+ + +A + +A+
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 539 GTAREMLGYYKEAIE 553
G + AI
Sbjct: 62 GLTQAENEKDGLAII 76
Score = 53.8 bits (130), Expect = 5e-08
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
G + + +A+ Y A+ +N N A +Y + A +AI +
Sbjct: 212 LGA-TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Query: 529 KKNVKAYLRRG--TAREMLGYYKEAIE 553
R M +++ +
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLN 297
Score = 51.9 bits (125), Expect = 2e-07
Identities = 6/99 (6%), Positives = 21/99 (21%), Gaps = 15/99 (15%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 514
+ A++ + S + + +
Sbjct: 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154
Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ A+ ++ + + + G + Y A
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193
Score = 33.0 bits (76), Expect = 0.24
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
G LQ D N + + G + L EA
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAAL 42
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 70.6 bits (174), Expect = 4e-15
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
Q+ E +G Y + ++I + +AI+L+ + Y+ + A + +A
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Query: 522 TKAINL--DKKNVKAYLRRGTAREMLGYYKEAIE 553
IN+ D+ N + + A + + E
Sbjct: 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAE 97
Score = 55.5 bits (135), Expect = 6e-10
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
+ N Y ++G++ ++ KAI LD + K +L +G A L Y+EA+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 553 E 553
+
Sbjct: 61 D 61
Score = 44.0 bits (105), Expect = 9e-06
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL 527
KG Y +++ +A+ Y I + + N ++ +A A L
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Query: 528 DKKN 531
+ +
Sbjct: 106 EHHH 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 71.7 bits (176), Expect = 5e-15
Identities = 22/118 (18%), Positives = 33/118 (27%), Gaps = 12/118 (10%)
Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 495
N A+L++ I + Y + +A F+ +
Sbjct: 20 NSGATLKDINAI------------PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF 67
Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
N Y AA Y F QA A L K + G + L +A E
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE 125
Score = 49.8 bits (119), Expect = 2e-07
Identities = 9/85 (10%), Positives = 27/85 (31%)
Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
E + + + + + + + + + A + G +AE D
Sbjct: 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD 66
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
NV + ++ +++A +
Sbjct: 67 FYNVDYIMGLAAIYQIKEQFQQAAD 91
Score = 45.2 bits (107), Expect = 7e-06
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ + +Q+ +A Y A L N+ T + L + L+A+
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127
Query: 522 TKAINLD-----KKNVKAYL 536
I K ++YL
Sbjct: 128 ELVIQHSNDEKLKIKAQSYL 147
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 76.6 bits (188), Expect = 5e-15
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 406 VPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAE 465
VP G + T + R + +++ LQ D + +++ + S E
Sbjct: 15 VPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFR---DSYFETHSVE 71
Query: 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-AEADCTKA 524
A K ++ K + E + A + A + + AE +KA
Sbjct: 72 DAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129
Query: 525 INLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ L+ + V+A+ + G G A
Sbjct: 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHT 158
Score = 59.3 bits (143), Expect = 2e-09
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 472 NQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
N K +A+S Y +A K++ +N + NRA + S+ +A ++A LD
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+ R E L +E
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLE 313
Score = 53.9 bits (129), Expect = 8e-08
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEAD 520
+ + + + ++ A++++ + + AYL QA +
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243
Query: 521 CTKAINLDKK---NVKAYLRRGTAREMLGYYKEAIE 553
+A +D+K N +L R T + Y EA+E
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279
Score = 53.1 bits (127), Expect = 1e-07
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 11/104 (10%)
Query: 460 QKQSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517
+ A+ KG A +A ++A+KL ++ Y + G A
Sbjct: 98 AQVEAQALMLKGK-ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156
Query: 518 EADCTKAINLDKK--------NVKAYLRRGTAREMLGYYKEAIE 553
+ A+ K V L+ + E + +++
Sbjct: 157 HTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200
Score = 51.5 bits (123), Expect = 5e-07
Identities = 12/107 (11%), Positives = 33/107 (30%), Gaps = 18/107 (16%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---------SF 514
E + G +K A + ++ A+ N + N + +
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHV 195
Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTA--------REMLGYYKEAIE 553
+ + A+ +D + +++ G A + ++A+
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242
Score = 32.7 bits (74), Expect = 0.30
Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
+ +K + + +A+ +++A L+ K
Sbjct: 264 RAT-LHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK---TK 319
Query: 529 KKNVKAYL 536
K +++ L
Sbjct: 320 PKKLQSML 327
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 70.5 bits (174), Expect = 9e-15
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
GN AY + +AI +Y +A++L+ +A + N AY + G + +A KA+ LD
Sbjct: 41 LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
++ +A+ G A G Y EAIE
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIE 124
Score = 67.4 bits (166), Expect = 9e-14
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
GN AY + + +AI +Y +A++L+ +A + N AY + G + +A KA+ LD
Sbjct: 7 LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
++ +A+ G A G Y EAIE
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIE 90
Score = 50.5 bits (122), Expect = 8e-08
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
GN AY + +AI +Y +A++L+ +A + N AY + G + +A KA+ LD
Sbjct: 75 LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Query: 529 KKN 531
++
Sbjct: 134 PRS 136
Score = 48.9 bits (118), Expect = 2e-07
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A + N AY + G + +A KA+ LD ++ +A+ G A G Y EAIE
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 56
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 74.8 bits (184), Expect = 2e-14
Identities = 9/92 (9%), Positives = 23/92 (25%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
Q G + + + +A L ++ + +
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L + V A ++ L + +
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLP 297
Score = 73.2 bits (180), Expect = 6e-14
Identities = 10/92 (10%), Positives = 25/92 (27%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
Q G + + + +A L ++ + + +
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L + V A G ++ L + +
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLP 331
Score = 72.9 bits (179), Expect = 8e-14
Identities = 10/92 (10%), Positives = 22/92 (23%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ G + + + +A L ++ + +
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L + V A G R L +
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLS 467
Score = 72.9 bits (179), Expect = 9e-14
Identities = 7/84 (8%), Positives = 21/84 (25%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ + + +A L ++ + + +A L
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+ V A ++ L + +
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLP 433
Score = 72.5 bits (178), Expect = 1e-13
Identities = 10/92 (10%), Positives = 24/92 (26%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
Q G + + + +A L ++ + +
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L + V A G ++ L + +
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLLP 399
Score = 72.5 bits (178), Expect = 1e-13
Identities = 9/92 (9%), Positives = 22/92 (23%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
Q + + + +A L ++ +
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L + V A G ++ L + +
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Score = 72.1 bits (177), Expect = 1e-13
Identities = 7/92 (7%), Positives = 22/92 (23%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ + + + +A L ++ + +
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L + V A ++ L + +
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLP 161
Score = 71.3 bits (175), Expect = 2e-13
Identities = 8/92 (8%), Positives = 22/92 (23%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ + + +A L ++ + +
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L + V A G ++ L + +
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLP 229
Score = 71.3 bits (175), Expect = 3e-13
Identities = 7/84 (8%), Positives = 21/84 (25%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ + + +A L ++ + + +A L
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+ V A ++ L + +
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLP 365
Score = 70.5 bits (173), Expect = 5e-13
Identities = 9/92 (9%), Positives = 24/92 (26%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ G + + + +A L ++ + +
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L + V A G ++ L + +
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLP 263
Score = 64.8 bits (158), Expect = 3e-11
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 3/114 (2%)
Query: 441 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNAT 499
L+ +A + + + Q +IAK G A + W A+ + L
Sbjct: 16 LEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL--TGAPLNLTPEQVV 73
Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
++ + + +A L + V A ++ L + +
Sbjct: 74 AIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 127
Score = 52.8 bits (127), Expect = 2e-07
Identities = 9/92 (9%), Positives = 22/92 (23%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ + + A ++L+ + R A
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALT 61
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+NL + V A ++ L + +
Sbjct: 62 GAPLNLTPEQVVAIASHDGGKQALETVQRLLP 93
Score = 52.1 bits (125), Expect = 3e-07
Identities = 8/84 (9%), Positives = 21/84 (25%), Gaps = 7/84 (8%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ + + +A L ++ S + + A+
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+ A LG + A++
Sbjct: 478 ND------HLVALACLG-GRPALD 494
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 73.9 bits (182), Expect = 2e-14
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Query: 436 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
+ Q Q ++ K +T N + A E+G + K+ I F AI +
Sbjct: 36 SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95
Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A + E+ + A + + L N+KA + + + ++A E
Sbjct: 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154
Score = 67.4 bits (165), Expect = 3e-12
Identities = 14/84 (16%), Positives = 35/84 (41%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G + ++ +AI + A+ + + + ++ A +A T+A+ +
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+++ G + LG Y+EA+
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVS 302
Score = 65.5 bits (160), Expect = 1e-11
Identities = 11/84 (13%), Positives = 24/84 (28%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G +++ AI ++L NN A +Y + A I +
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
K + + + ++
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPV 188
Score = 62.8 bits (153), Expect = 8e-11
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 459 NQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFL 515
K+ + + +++ D Y EA NG+ + + + SG F
Sbjct: 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230
Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A A+ + ++ + R G +EA+E
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268
Score = 60.8 bits (148), Expect = 3e-10
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 4/115 (3%)
Query: 443 EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----A 498
E+A A +S Q + E+A+ ++ Q +S + + N
Sbjct: 6 ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65
Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
L+ G AI D + +A+ G + + AI
Sbjct: 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Score = 53.5 bits (129), Expect = 8e-08
Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
+A+ YT A+++ N + + G++ +A ++ A++L +K+ A
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324
Query: 542 --REMLGYYKEAI 552
+ + A+
Sbjct: 325 ISGNIWAALRIAL 337
Score = 46.6 bits (111), Expect = 1e-05
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 13/93 (13%)
Query: 474 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA-------- 524
+Y + A IK N N+ + + ++ D +
Sbjct: 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201
Query: 525 ----INLDKKNVKAYLRRGTAREMLGYYKEAIE 553
N D + G + G + AI+
Sbjct: 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 70.2 bits (173), Expect = 3e-14
Identities = 13/84 (15%), Positives = 31/84 (36%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
KG K ++ +A+ + + + + AY+++G+ + +++
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
NVK G + Y A+
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVP 97
Score = 69.4 bits (171), Expect = 5e-14
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
G AY + ++ +N + Y++ + A K +
Sbjct: 48 LGI-AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
N R G A + LG + EAI+
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAID 131
Score = 67.5 bits (166), Expect = 3e-13
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
G Y +++ A+ + + N N A G F +A A+ L
Sbjct: 82 LGL-TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
K + + E +G ++EA+
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALP 165
Score = 54.4 bits (132), Expect = 9e-09
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 491 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 550
+ + YY ++ ++ ++G + QA + + D +V L G A G
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 551 AIE 553
E
Sbjct: 61 GTE 63
Score = 52.5 bits (127), Expect = 4e-08
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
G A + +AI + A+ L N + A +Y + G +A KA LD
Sbjct: 116 LGV-ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
Query: 529 KKNVKAY 535
+
Sbjct: 175 EGASVEL 181
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 72.8 bits (179), Expect = 4e-14
Identities = 13/112 (11%), Positives = 34/112 (30%)
Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
+ N + E+G + ++ A+ + A++ + + +
Sbjct: 42 DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 101
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
E+ L A + + + L N A + + ++A E
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153
Score = 65.4 bits (160), Expect = 1e-11
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G ++ KA+ +T A+ + N+ ++ A +A A +A+ L
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+++ G + LG ++EA+E
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVE 306
Score = 63.9 bits (156), Expect = 4e-11
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK 523
+K D +L+ + A++L+ + + SG + +A T
Sbjct: 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A+++ + + + G +EA+
Sbjct: 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVA 272
Score = 57.7 bits (140), Expect = 3e-09
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 15/99 (15%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G +++Q L AIS ++L +N T A ++ QA +
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
Query: 530 KNVKAYLRR---------GTAREMLGY------YKEAIE 553
G ++ +LG + E E
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202
Score = 54.3 bits (131), Expect = 4e-08
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
+A++ Y A++L N + + G+ +A +A+N+ +K+ G
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328
Query: 542 REMLGYYK 549
E +
Sbjct: 329 SENIWSTL 336
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 72.1 bits (177), Expect = 8e-14
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 16/106 (15%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRAAA 507
+E K GN +K + W AI YT+ + KL + N A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
L+ + A C +A+ +D N KA RR + L Y +A+
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 328
Score = 36.6 bits (85), Expect = 0.016
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
K W A+ EA++++ +N RA + + QA AD KA + ++
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 67.0 bits (164), Expect = 8e-14
Identities = 11/71 (15%), Positives = 18/71 (25%)
Query: 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
+ +N Y E F A A++ D A+ G
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 543 EMLGYYKEAIE 553
+ G A +
Sbjct: 64 QGQGDRAGARQ 74
Score = 42.7 bits (101), Expect = 3e-05
Identities = 7/74 (9%), Positives = 19/74 (25%), Gaps = 4/74 (5%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
G + +Q+ A+ A+ + + + G A + +
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
Query: 531 NVKAYLRRGTAREM 544
+E+
Sbjct: 86 RGDQ----QVVKEL 95
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 71.2 bits (175), Expect = 1e-13
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G+ K K++ +A+ ++ +A+ L NA+ YS + G+F A A+ L +
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301
Query: 530 KNVKAYLRRGTAREMLGYYKEAIEG 554
+ + G EM EA G
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIG 326
Score = 63.5 bits (155), Expect = 4e-11
Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 3/86 (3%)
Query: 470 KGNQAYKDKQWL--KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
G Y A + ++A L + ++ QA A A L
Sbjct: 96 VGC-YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154
Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIE 553
K L G + K A
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAER 180
Score = 61.9 bits (151), Expect = 1e-10
Identities = 12/72 (16%), Positives = 27/72 (37%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
+A++ Y A +L Y + + AE ++A+++ ++ G
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202
Query: 542 REMLGYYKEAIE 553
G +K A +
Sbjct: 203 AFQNGEWKTAEK 214
Score = 61.2 bits (149), Expect = 2e-10
Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNG---------NNATYYSNRAAAYLESGSFLQAEA 519
E G A+++ +W A ++ +A++ +N + + +A
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A+ L +N Y G ++G ++ A++
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291
Score = 60.4 bits (147), Expect = 4e-10
Identities = 12/122 (9%), Positives = 38/122 (31%), Gaps = 12/122 (9%)
Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
S + ++ + +++ ++ + Y + + + ++ + +A+
Sbjct: 2 SYNKPSETVIPESVDGL----QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57
Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG--------YYKEA 551
+E + K ++L N ++ G M+G Y +A
Sbjct: 58 CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117
Query: 552 IE 553
Sbjct: 118 TT 119
Score = 59.6 bits (145), Expect = 7e-10
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G + A F+++A+ + + ++G + AE A+ K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224
Query: 530 ---------KNVKAYLRRGTAREMLGYYKEAIE 553
K G L Y EA++
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 71.6 bits (175), Expect = 2e-13
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY--------------- 500
+T + + A I KEKG +K ++++A+ Y + +
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319
Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ N A YL+ + +A C KA+ LD N K RRG A+ ++ ++ A
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Score = 45.4 bits (107), Expect = 3e-05
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VK 533
K +++ KA+ +A+ L+ N R A L F A+ D K + ++ +N +
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388
Query: 534 AYLRR 538
+
Sbjct: 389 LQISM 393
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 65.9 bits (162), Expect = 2e-13
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
GN AY + +AI +Y +A++L+ NNA + N AY + G + +A KA+ LD
Sbjct: 15 LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
N +A+ G A G Y EAIE
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIE 98
Score = 62.4 bits (153), Expect = 4e-12
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
GN AY + +AI +Y +A++L+ NNA + N AY + G + +A KA+ LD
Sbjct: 49 LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107
Query: 529 KKNVKAYLRRGTAREMLG 546
N +A G A++ G
Sbjct: 108 PNNAEAKQNLGNAKQKQG 125
Score = 49.7 bits (120), Expect = 1e-07
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
N+A + N AY + G + +A KA+ LD N +A+ G A G Y EAIE
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 71.4 bits (175), Expect = 3e-13
Identities = 19/120 (15%), Positives = 35/120 (29%)
Query: 434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493
V N + E+ D+ K ST + + L+ Y +I
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300
Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
++ +A F+ A TK + +D N+ Y + G +
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360
Score = 69.5 bits (170), Expect = 1e-12
Identities = 16/84 (19%), Positives = 30/84 (35%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G + +A +++++ ++ + A ++ G QA + T A L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
YL G LG A E
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANE 462
Score = 67.6 bits (165), Expect = 4e-12
Identities = 13/95 (13%), Positives = 37/95 (38%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
++S+++ K + + +++ ++ T+ ++++ N Y A+ ESG +
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359
Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
++ + +L G + EA
Sbjct: 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394
Score = 65.6 bits (160), Expect = 2e-11
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
+ ++ + +AIS YT A +L Y +++ G+ L A + L
Sbjct: 413 FAH-SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+ + G + AI
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAIN 496
Score = 65.2 bits (159), Expect = 3e-11
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 469 EKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQAEADC 521
E G A+ AI+ + A+ L A ++N AY + + A
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ + L + + AI
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571
Score = 62.9 bits (153), Expect = 1e-10
Identities = 14/72 (19%), Positives = 27/72 (37%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G+ K K + AI + + L+ N+A ++ A YL A +++ +
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
Query: 530 KNVKAYLRRGTA 541
+ A A
Sbjct: 582 NEIMASDLLKRA 593
Score = 62.9 bits (153), Expect = 1e-10
Identities = 11/84 (13%), Positives = 29/84 (34%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
++ + K + + + A + YL +A +K+ +D
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
+ A++ + + G + +AI
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAIS 428
Score = 61.8 bits (150), Expect = 3e-10
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 7/91 (7%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-- 527
G Q + L A + + L + + A A+ L
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 528 -----DKKNVKAYLRRGTAREMLGYYKEAIE 553
+K + G A L Y AI+
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Score = 49.1 bits (117), Expect = 3e-06
Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 3/122 (2%)
Query: 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
+ + + D +KL K A + +G + +A Y EA+ ++
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230
Query: 495 GNNATYYSNRAAAYLESGSFLQAEA---DCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
+ + +L + + + D +++ +
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290
Query: 552 IE 553
E
Sbjct: 291 AE 292
Score = 34.8 bits (80), Expect = 0.083
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 473 QAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES 511
Y K AI+ E++ ++ N A E+
Sbjct: 558 LVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEEN 597
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 66.8 bits (164), Expect = 8e-13
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
+G Y + KA + +A+ L + S A YL G +A A KA+
Sbjct: 124 RGL-VYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
K++ +R +A + G +EA
Sbjct: 182 PKDLDLRVRYASALLLKGKAEEAAR 206
Score = 61.0 bits (149), Expect = 7e-11
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
+ ++ ++ +A+S +A ++N A + R Y G +AEA +
Sbjct: 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A+ L + + +G EA+
Sbjct: 144 ALAL-EDTPEIRSALAELYLSMGRLDEALA 172
Score = 60.2 bits (147), Expect = 1e-10
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
G Q Y ++ A++ + A+K N + A L+ G A + +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 530 KNVKAYLRRGTA-----------REMLGYYKEAIE 553
+ + Y+ A GY ++A+
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105
Score = 46.0 bits (110), Expect = 8e-06
Identities = 8/58 (13%), Positives = 17/58 (29%)
Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
G + A +A+ + ++ +A + LG A+E
Sbjct: 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60
Score = 46.0 bits (110), Expect = 9e-06
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
Y L +A++ Y +A++ + A+A L G +A +
Sbjct: 157 LAE-LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 61.7 bits (150), Expect = 7e-12
Identities = 13/95 (13%), Positives = 25/95 (26%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
N E E+G K +A + + + + E+ A
Sbjct: 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A LD K++ + + A+
Sbjct: 72 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALA 106
Score = 42.8 bits (101), Expect = 2e-05
Identities = 9/69 (13%), Positives = 24/69 (34%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ E + G ++++ AI A L+ + ++ A ++ + A A
Sbjct: 49 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108
Query: 522 TKAINLDKK 530
+ +
Sbjct: 109 RAWLLSQPQ 117
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 63.8 bits (156), Expect = 1e-11
Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
Q + I + + + + + +A + +A+K + N + RA Y +A+
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 521 CTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIE 553
+A+++ + + G L E++
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA 98
Score = 54.6 bits (132), Expect = 1e-08
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 482 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
++++++ +A+ N+ + G F AEA +++ + A+
Sbjct: 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154
Query: 540 TAREMLGYYKEAIE 553
+ + G +A
Sbjct: 155 RTKMLAGQLGDADY 168
Score = 48.0 bits (115), Expect = 2e-06
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
KG + K Q+ A ++ ++ + A + +G A+ K + +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
L G A
Sbjct: 179 VLQADDLLLGWKIA--KALGNAQA 200
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 66.6 bits (162), Expect = 1e-11
Identities = 10/114 (8%), Positives = 27/114 (23%), Gaps = 1/114 (0%)
Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
+++ + Q IA + + + +A L
Sbjct: 169 AMEAVHASRNALTGAPLNLTPAQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLTPAQVV 227
Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
++ + + +A L V A ++ L + +
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281
Score = 65.8 bits (160), Expect = 2e-11
Identities = 9/92 (9%), Positives = 23/92 (25%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
G + + + +A L + ++ + +
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L V A G ++ L + +
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLP 383
Score = 64.7 bits (157), Expect = 4e-11
Identities = 7/85 (8%), Positives = 21/85 (24%)
Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
+ + + +A L + ++ + + +A L
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
V A ++ L + +
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLP 349
Score = 64.7 bits (157), Expect = 5e-11
Identities = 8/92 (8%), Positives = 22/92 (23%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ + + +A L + ++ + +
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L V A G ++ L + +
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLP 315
Score = 62.7 bits (152), Expect = 2e-10
Identities = 8/92 (8%), Positives = 23/92 (25%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
G + + + +A L + ++ + +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L + V A ++ L + +
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLP 620
Score = 61.2 bits (148), Expect = 5e-10
Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 1/112 (0%)
Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
E + Q Q IA + + + +A L
Sbjct: 578 LETVQRLLPVLCQAHGLTQVQVVAIA-SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAI 636
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
++ + + +A L V A G ++ L + +
Sbjct: 637 ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 688
Score = 61.2 bits (148), Expect = 6e-10
Identities = 8/92 (8%), Positives = 21/92 (22%), Gaps = 1/92 (1%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ + + +A L + ++ + +
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L V A G + L + +
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQA-LETVQRLLP 416
Score = 60.4 bits (146), Expect = 1e-09
Identities = 11/112 (9%), Positives = 28/112 (25%), Gaps = 1/112 (0%)
Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
E + Q IA + + + +A L +
Sbjct: 612 LETVQRLLPVLCQAHGLTPAQVVAIA-SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 670
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
++ + + +A L ++ V A ++ L + +
Sbjct: 671 ASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLP 722
Score = 59.7 bits (144), Expect = 2e-09
Identities = 8/94 (8%), Positives = 21/94 (22%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
+ + +A L + ++ + +
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L V A G ++ L + +
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 586
Score = 59.3 bits (143), Expect = 2e-09
Identities = 8/84 (9%), Positives = 22/84 (26%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ + + +A L + ++ + + +A L
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
V A G ++ L + +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLP 552
Score = 58.9 bits (142), Expect = 3e-09
Identities = 7/92 (7%), Positives = 19/92 (20%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ + + + L ++ + Q
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L V A ++ L + +
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLP 518
Score = 58.5 bits (141), Expect = 4e-09
Identities = 8/85 (9%), Positives = 21/85 (24%)
Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
G + + + +A L ++ + + +A L
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
V A ++ L + +
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLP 654
Score = 58.1 bits (140), Expect = 5e-09
Identities = 8/72 (11%), Positives = 20/72 (27%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
+ + +A L ++ + + +A L V A G
Sbjct: 685 RLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 744
Query: 542 REMLGYYKEAIE 553
++ L + +
Sbjct: 745 KQALETVQRLLP 756
Score = 57.7 bits (139), Expect = 6e-09
Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 1/92 (1%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
G + + + +A L + ++ + +
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A L V A ++ L + +
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLP 450
Score = 57.7 bits (139), Expect = 7e-09
Identities = 6/72 (8%), Positives = 20/72 (27%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
+ + +A L + ++ + + + L V A
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472
Query: 542 REMLGYYKEAIE 553
++ L ++ +
Sbjct: 473 KQALETVQQLLP 484
Score = 54.3 bits (130), Expect = 7e-08
Identities = 7/75 (9%), Positives = 20/75 (26%)
Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
+ + +A L + ++ + + +A L V A
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775
Query: 539 GTAREMLGYYKEAIE 553
++ L + +
Sbjct: 776 IGGKQALETVQRLLP 790
Score = 43.5 bits (102), Expect = 2e-04
Identities = 6/72 (8%), Positives = 18/72 (25%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
+ + +A L ++ + + + L V A
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812
Query: 542 REMLGYYKEAIE 553
++ L + +
Sbjct: 813 KQALETVQRLLP 824
Score = 43.1 bits (101), Expect = 2e-04
Identities = 9/72 (12%), Positives = 18/72 (25%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
A ++L+ + R A +NL V A
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201
Query: 542 REMLGYYKEAIE 553
++ L + +
Sbjct: 202 KQALETVQRLLP 213
Score = 39.2 bits (91), Expect = 0.004
Identities = 9/101 (8%), Positives = 24/101 (23%), Gaps = 7/101 (6%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA-- 517
Q + + + +A+ + + ++ A + QA
Sbjct: 792 LCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE 851
Query: 518 -----EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ L V A ++ L + +
Sbjct: 852 TVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLP 892
Score = 35.4 bits (81), Expect = 0.052
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 8/89 (8%)
Query: 473 QAYKDKQ-WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA-------EADCTKA 524
A +A+ + + + + A + QA +A
Sbjct: 770 VAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQA 829
Query: 525 INLDKKNVKAYLRRGTAREMLGYYKEAIE 553
L + V A ++ L + +
Sbjct: 830 HGLTQDQVVAIASNIGGKQALETVQRLLP 858
Score = 30.8 bits (69), Expect = 1.7
Identities = 17/126 (13%), Positives = 28/126 (22%), Gaps = 17/126 (13%)
Query: 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
E + Q IA G QA + Q + + + L
Sbjct: 877 NIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETVQ--RLLPVLCQDHGLT 934
Query: 495 GNNATYYSNRAAAYLESGSFLQA-------EADCTKAINLDKKNVKAYLRRGTAREMLGY 547
++ A + QA + L V A G + L
Sbjct: 935 -------PDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGK-QALES 986
Query: 548 YKEAIE 553
+
Sbjct: 987 IVAQLS 992
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 61.9 bits (151), Expect = 6e-11
Identities = 15/118 (12%), Positives = 42/118 (35%)
Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 495
+ + L + + ++ + + G + +A +A++++
Sbjct: 9 HHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68
Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
++A ++ A + A+ + KA+ D +N + G Y+EA +
Sbjct: 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ 126
Score = 59.6 bits (145), Expect = 4e-10
Identities = 11/83 (13%), Positives = 30/83 (36%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
G + + K+ +A ++ ++++LN N + A + ++ A +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
N ++ L ++ A
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAAS 230
Score = 55.4 bits (134), Expect = 1e-08
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 482 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
+A EA + L + + N L+ QA+ K++ L++ L
Sbjct: 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182
Query: 540 TAREMLGYYKEAIE 553
Y A +
Sbjct: 183 DLLYKEREYVPARQ 196
Score = 54.6 bits (132), Expect = 2e-08
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 474 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--LDKK 530
++ + A Y +A+ + NA +N E + +A +A L +
Sbjct: 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139
Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
+ + G + +A E
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKE 162
Score = 38.0 bits (89), Expect = 0.004
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
+A E + YK+++++ A +Y + G NA A + +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234
Query: 524 AINL--DKKNVKAYLR 537
L + +
Sbjct: 235 LKRLYPGSLEYQEFQA 250
Score = 32.6 bits (75), Expect = 0.22
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
+ ++ ++ + S + + K + AY++ G G ++A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 553 E 553
Sbjct: 58 V 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 1e-10
Identities = 66/493 (13%), Positives = 133/493 (26%), Gaps = 147/493 (29%)
Query: 139 MPG-GSSSGAAVAVAADLVD--FSLGID--TVGGVRVPSAFCGIL-----GFRPSYGA-V 187
+ G G + A + V I + P +L P++ +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 188 SHMGIIPISTS---------------------LDTVGWFARDPKILRHVGH---VLLQLP 223
H I + L V + K +LL
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-Q---NAKAWNAFNLSCKILL--- 270
Query: 224 FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG---EYFDSKV 280
+ R + D + A + + E +Y D +
Sbjct: 271 -----TTRFKQVTDF------LSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRP 315
Query: 281 PSL-KGFHKTN-------GE-LKNVMRLIQRYE--FKNNHNEWIESVKPALDPDISAEIG 329
L + TN E +++ + ++ + IES L+P ++
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 330 EMLE-------ISETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380
+ L I ++ I++++ ++ L K +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-------------------YSL 416
Query: 381 LSEDYQNRAFSLLSIASVSGCCQV--------------TVPLGY--YDKCPTSV-----S 419
+ + + S+ SI + ++ +P + D P + S
Sbjct: 417 VEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 420 FIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 479
I H L +++ E+ + L QK + + + +
Sbjct: 476 HIGHH------LKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT- 523
Query: 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVKAYLRR 538
L+ + FY I +N Y A L+ FL + E + + D LR
Sbjct: 524 -LQQLKFYKPYIC---DNDPKYERLVNAILD---FLPKIEENLICSKYTD------LLRI 570
Query: 539 GTAREMLGYYKEA 551
E ++EA
Sbjct: 571 ALMAEDEAIFEEA 583
Score = 47.5 bits (112), Expect = 1e-05
Identities = 68/466 (14%), Positives = 131/466 (28%), Gaps = 144/466 (30%)
Query: 7 NLWVLL----GLG---LAGILLMTKKLKKNIKQDFGAF-------------IEKLQLL-- 44
VL+ G G +A + ++ K++ K DF F +E LQ L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 45 ---PPPQPLP---PKAPHPLTGLSFAVSDLFDIEGY---------VTGFGHPEWARTHSA 89
P + + + L + Y V
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-------QNAKAWN 260
Query: 90 A----------SRTSTVVSTLVEGGATCIGKTVVDE------------FAYSINGTNKHY 127
A +R V L T I ++ ++ +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLD--CRPQ 316
Query: 128 DTP-----TNPAAPSQMPGGSSSGAAVAVAADLVDF--SLGIDTVGGVRVPSAFCGILG- 179
D P TNP S + ++ D + D + + + +L
Sbjct: 317 DLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEP 368
Query: 180 --FRPSYGAVSHMGIIP----ISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 233
+R + + + P I T L ++ WF + V + L + ++
Sbjct: 369 AEYRKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 234 IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLK--------- 284
I + LK+ + + R ++ H N+ + FDS
Sbjct: 426 ISIPSIYLELKVKLENEYAL---------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 285 -GFH---KTNGELKNVMRLI-QRYEF-----KNNHNEW--IESVKPAL------------ 320
G H + E + R++ + F +++ W S+ L
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 321 -DPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL--KDDGIL 363
DP + +L+ + EN I ++ + L +D+ I
Sbjct: 537 NDPKYERLVNAILDFLPKIEENL--ICSKYTDLLRIALMAEDEAIF 580
Score = 47.2 bits (111), Expect = 1e-05
Identities = 48/376 (12%), Positives = 110/376 (29%), Gaps = 119/376 (31%)
Query: 227 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF 286
Q P+ I+ ++ ++ D V T +LF + K E + + F ++
Sbjct: 39 QDMPKSILSKEEIDHIIMSK-DAVSG-----TLRLFWTLLSKQEEMVQKF------VEEV 86
Query: 287 HKTNGELKNVMRLIQRYEFKNNHNEWI------ESVKPALDPDISAEIGEMLEISETVIE 340
+ N Y +++ E +P++ + E + L V
Sbjct: 87 LRIN------------Y-------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 341 NCKSIRNEM----RSAISSLLKDDGILVTPTTAYPPPKLG----GKEMLSEDYQNRAFSL 392
R + R A+ L +L+ G GK + A +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLI-----D-----GVLGSGKTWV-------ALDV 170
Query: 393 LSIASVSGCCQVTVPLG-YYDKCPTSVSFIARHGGDRFLLDTVQNMYA----SLQEQADI 447
V Q + ++ ++ +L+ +Q + + ++D
Sbjct: 171 CLSYKV----QCKMDFKIFW------LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAY------KDKQWLKAISF--------------- 486
++ KL ++ + + + ++ + A +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 487 -----YTEAIKLNGNNATYYSNRA----AAYLESGSF-LQAEADCT---KAINLDKKNVK 533
T I L+ ++ T + YL+ L E T + +++ +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSI----IA 334
Query: 534 AYLRRGTAREMLGYYK 549
+R G A +K
Sbjct: 335 ESIRDGLAT--WDNWK 348
Score = 44.8 bits (105), Expect = 8e-05
Identities = 36/248 (14%), Positives = 82/248 (33%), Gaps = 57/248 (22%)
Query: 327 EIGEM-------LEI-SETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376
E GE L + + ++N CK +++ +S +S D I+++ +L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLF 68
Query: 377 G--------------KEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY----DKCPTSV 418
+E+L +Y+ F + I + Q ++ Y D+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDN 123
Query: 419 SFIARHGGDRF-LLDTVQNMYASLQEQADIAT-------KSKLSTNTFNQKQSAEIAKEK 470
A++ R ++ L+ ++ K+ ++ + S ++ +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKM 180
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
+ + WL + + L Y + +D + I L
Sbjct: 181 DFKIF----WLNLKNCNSPETVLEMLQKLLYQID--------PNWTSRSDHSSNIKLRIH 228
Query: 531 NVKAYLRR 538
+++A LRR
Sbjct: 229 SIQAELRR 236
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 61.3 bits (148), Expect = 2e-10
Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 1/113 (0%)
Query: 442 QEQADIATKSKLSTNTFNQKQS-AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500
++ D+A K ++ + ++A + A ++ A + E
Sbjct: 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202
Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ +AA ++ G + AE +A++ D + + + + LG E
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255
Score = 32.4 bits (73), Expect = 0.32
Identities = 6/64 (9%), Positives = 15/64 (23%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
+ + + +W A EA+ + + N G +
Sbjct: 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257
Query: 522 TKAI 525
+
Sbjct: 258 LSQL 261
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 56.6 bits (138), Expect = 2e-10
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
GN AY + +AI +Y +A++L+ NNA + N AY + G + +A KA+ LD
Sbjct: 15 LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 529 KKNVKAYLRRGTAREMLG 546
N +A G A++ G
Sbjct: 74 PNNAEAKQNLGNAKQKQG 91
Score = 47.0 bits (113), Expect = 4e-07
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
N+A + N AY + G + +A KA+ LD N +A+ G A G Y EAIE
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 62.5 bits (151), Expect = 2e-10
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
+ + + +A+ Y EAI+++ A YSN E A T+AI ++
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
A+ + + G EAI
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIA 132
Score = 60.2 bits (145), Expect = 1e-09
Identities = 16/83 (19%), Positives = 34/83 (40%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
N + +A+ Y +A+++ A +SN A+ + G +A +AI +
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
AY G + + + A++
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQ 98
Score = 54.8 bits (131), Expect = 6e-08
Identities = 22/92 (23%), Positives = 40/92 (43%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
A+ GN + + A+ YT AI++N A +SN A+ + +SG+ +A A
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A+ L AY +++ + + E
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166
Score = 43.6 bits (102), Expect = 1e-04
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A +N A E G+ +A KA+ + + A+ + + G +EA+
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Score = 33.2 bits (75), Expect = 0.27
Identities = 12/87 (13%), Positives = 25/87 (28%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
A+ + +AI+ Y A+KL + Y N A + +
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYY 548
K +++ ++ Y
Sbjct: 169 KKLVSIVADQLEKNRLPSVHPHHSMLY 195
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 60.2 bits (146), Expect = 1e-09
Identities = 10/92 (10%), Positives = 21/92 (22%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
Q + + L+ + + +A
Sbjct: 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+A + ++ L G A E G + A
Sbjct: 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAA 112
Score = 57.2 bits (138), Expect = 8e-09
Identities = 13/75 (17%), Positives = 24/75 (32%)
Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
+ + A++ + + A A L G E + + L + +A R
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 539 GTAREMLGYYKEAIE 553
G R + EA
Sbjct: 64 GRVRWTQQRHAEAAV 78
Score = 49.5 bits (118), Expect = 2e-06
Identities = 13/92 (14%), Positives = 26/92 (28%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
E G + ++ +A +A + A ++G A A
Sbjct: 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
T+A L + + R L ++
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146
Score = 35.2 bits (81), Expect = 0.057
Identities = 5/43 (11%), Positives = 12/43 (27%)
Query: 511 SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ + A+ ++ A+L A +G
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEM 44
Score = 30.2 bits (68), Expect = 2.0
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 473 QAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
A +D Q A + YT A +L + + + + +
Sbjct: 99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158
Query: 532 VKA 534
V A
Sbjct: 159 VGA 161
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 54.3 bits (131), Expect = 2e-09
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL 527
+ + A+ E ++ Y AY + G + +A + AI L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 528 DKKNVKAYLRRGTAREMLGYYKEA 551
+ + R+ + Y K+
Sbjct: 65 NPDSPALQARKMVMDILNFYNKDM 88
Score = 40.4 bits (95), Expect = 1e-04
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRRGTAREMLGYYKEAIE 553
+ G A + + + +AY G A LG +++A+
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN 56
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 53.6 bits (129), Expect = 4e-09
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 482 KAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
+A+ +Y +AI Y + + G + +AEA + + +
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 539 GTAREMLGYYKEAIE 553
LG Y++ +E
Sbjct: 68 AMVLYNLGRYEQGVE 82
Score = 41.2 bits (97), Expect = 8e-05
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 473 QAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
++ ++ KA + +K N+ A G + Q K
Sbjct: 35 STFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI------- 87
Query: 532 VKAYLRRGTAREMLGYYKEAIE 553
+ + E + YK+AI
Sbjct: 88 ----IAETSDDETIQSYKQAIL 105
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 53.0 bits (128), Expect = 4e-09
Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
+ K +A++ + E ++ + + Y + Y A + I + ++
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 531 NVKAYLRRGTAREMLGYYKEA 551
E+ +A
Sbjct: 74 EGTQK----DLSELQDAKLKA 90
Score = 50.0 bits (120), Expect = 6e-08
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
+ A +L+ + +A A + + D V Y G E L +AI+
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 57.0 bits (137), Expect = 7e-09
Identities = 12/76 (15%), Positives = 25/76 (32%)
Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
K + +++ T I+ N + +R Q +N D KN A+
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 538 RGTAREMLGYYKEAIE 553
R + + ++
Sbjct: 206 RQWVIQEFKLWDNELQ 221
Score = 48.9 bits (116), Expect = 2e-06
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT-KAINLD 528
+D++ +A +AI+LN N T + R L E + I
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
KN + + R E L + +E
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELE 187
Score = 47.0 bits (111), Expect = 1e-05
Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 13/97 (13%)
Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
+ + + + F + + + N + +R E + + + D
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231
Query: 530 KNVKAYLRRGTA-------------REMLGYYKEAIE 553
+N + +R + Y E I+
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Score = 34.3 bits (78), Expect = 0.086
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
+ + + E IKL +N + + N L+ + + ++L + YL
Sbjct: 254 AVLEREVQYTLEMIKLVPHNESAW-NYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLI 312
Query: 538 RGTAREMLGYYKEAIEG 554
Y++ +E
Sbjct: 313 AFLVD----IYEDMLEN 325
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 53.0 bits (127), Expect = 1e-08
Identities = 13/73 (17%), Positives = 25/73 (34%)
Query: 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540
+++ + + A +SG + A LD + + +L G
Sbjct: 4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63
Query: 541 AREMLGYYKEAIE 553
R+ +G Y AI
Sbjct: 64 CRQAMGQYDLAIH 76
Score = 49.9 bits (119), Expect = 2e-07
Identities = 16/83 (19%), Positives = 26/83 (31%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
G Q+ AI Y+ ++ + + A L+ G +AE+ A L
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
+ ML K E
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKKE 144
Score = 29.5 bits (66), Expect = 1.6
Identities = 4/41 (9%), Positives = 10/41 (24%)
Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
G + ++ + G Y++A
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAH 41
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 53.3 bits (128), Expect = 2e-08
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAINL 527
G + ++ Y +A++L G NA Y+ A S Q A KA+ L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIE 553
D + A + + M Y +AIE
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIE 136
Score = 46.8 bits (111), Expect = 3e-06
Identities = 11/86 (12%), Positives = 29/86 (33%)
Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
+ + ++ +Q + + + I+ N N+ ++ YL + +
Sbjct: 7 RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66
Query: 521 CTKAINLDKKNVKAYLRRGTAREMLG 546
+A+ L +N + Y T
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQA 92
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 55.7 bits (134), Expect = 2e-08
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
+ + A++ +A + N N S A+ + + + +AE K +
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363
Query: 528 DKKNVKA---YLRRGTARE-MLGYYKEAIE 553
+ V +LR G + + +AI
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393
Score = 55.7 bits (134), Expect = 2e-08
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 462 QSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE- 518
+S E+ E+G K Q +A + +A++ N + S A A ++ ++
Sbjct: 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193
Query: 519 --ADCTKAINLDKKNVKAYLRRGTAREMLG-----------YYKEAIE 553
+AI L+ N + + +EA+E
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241
Score = 54.6 bits (131), Expect = 4e-08
Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 19/109 (17%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---------- 513
++ + + + KAI +A++ NNA + Y
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306
Query: 514 ---------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A A KA + + + + Y+EA
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355
Score = 53.0 bits (127), Expect = 1e-07
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 1/84 (1%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
+ ++ + EA++ + A Y +A KA+
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 531 NVKAYLRRGTA-REMLGYYKEAIE 553
N + + G R + E
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRE 303
Score = 47.2 bits (112), Expect = 1e-05
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
Q Y+ K KAI + E +K+N + + LQ A ++ + +
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQKSR--------EKEKMKDKLQKIAK--MRLSKNGADS 430
Query: 533 KAYLRRGTAREMLGYYKEAIE 553
+A +E+ ++A E
Sbjct: 431 EALHVLAFLQELNEKMQQADE 451
Score = 46.1 bits (109), Expect = 2e-05
Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 19/137 (13%)
Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-- 493
N+ D K T N++ A + + Q A+ +A +L
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 494 -------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA--------YLRR 538
+ + N A Y G + K ++ +K
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142
Query: 539 GTAREMLG--YYKEAIE 553
G R G + A
Sbjct: 143 GWTRLKCGGNQNERAKV 159
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 54.3 bits (130), Expect = 4e-08
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
+KQ + + L N + Y +A + L G ++ I+L+
Sbjct: 248 SQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
+ Y+ G EM G +EA +
Sbjct: 308 M-SWLNYVLLGKVYEMKGMNREAAD 331
Score = 40.9 bits (95), Expect = 8e-04
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 3/114 (2%)
Query: 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTF--NQKQSAEIAKEKGNQAYKDKQWLKAIS 485
+ L+D V++ L E+ A +++ + I + K A + ++
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298
Query: 486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
I L + Y Y G +A A NL Y
Sbjct: 299 AINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIEN 351
Score = 40.5 bits (94), Expect = 0.001
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAY--------LESGSFLQAEADCTKAINLDK 529
K +A E ++ + + +A L+ + + L +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 530 KNVKA--YLRRGTAREMLGYYKEAIE 553
N + Y + + + G E+ +
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQ 298
Score = 29.7 bits (66), Expect = 2.9
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 7/60 (11%)
Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES 511
L + N ++ + KG +A Y A L T Y + S
Sbjct: 305 DLEMSWLNYVLLGKVYEMKGMNR-------EAADAYLTAFNLRPGANTLYWIENGIFQTS 357
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 51.0 bits (121), Expect = 9e-08
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 23/117 (19%)
Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------------GNNATYYSNRAAA 507
+ A +A + ++ +A + A++++ G +A ++ A A
Sbjct: 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 66
Query: 508 YLESGSFLQAEADCTKAINLDKKN-----------VKAYLRRGTAREMLGYYKEAIE 553
SF +A KA++ + + A R A + LG EA+
Sbjct: 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 2e-06
Identities = 61/426 (14%), Positives = 116/426 (27%), Gaps = 135/426 (31%)
Query: 181 RP---SYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQL--PFAAQR-SPRQII 234
RP S+G++ H ++ + T+ +F QL F P +
Sbjct: 7 RPLTLSHGSLEH--VLLVPTAS----FFI------------ASQLQEQFNKILPEPTEGF 48
Query: 235 IADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELK 294
ADD E P + +L G+ LG Y S V G+
Sbjct: 49 AADD--E----PT---------TPAELVGKF------LG-YVSSLVEP-----SKVGQFD 81
Query: 295 NVMRLIQRYEFKNN---HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSI-RNEMR 350
V+ L EF+N N+ I ++ L + + + E+ + I R +
Sbjct: 82 QVLNLCLT-EFENCYLEGND-IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 351 SAISSLLK--DDGILVTPTTAYPPPKLGG--------KEM--LSEDYQ-------NRAFS 391
+ S+L + +G GG +E+ L + Y +
Sbjct: 140 KSNSALFRAVGEG----NAQLV--AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 392 LL-SIASVSGCCQVTVPLG-----------------YYDKCPTSVSFIARHGGDRFLLDT 433
L + + + G Y P S I ++
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI-------GVIQL 246
Query: 434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493
Y + + +G A+ AI
Sbjct: 247 AH--YVVTAKLLG------FTPGELRSYLKGATGHSQGLVT--------AV-----AIAE 285
Query: 494 NGNNATYYSNRAAAYLESGSFLQAEA-DCTKAINLDKKNVKAYLRR--GTAREML---GY 547
+ +++ + + F+ + +L ++ L G ML
Sbjct: 286 TDSWESFFVS-VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 548 YKEAIE 553
+E ++
Sbjct: 345 TQEQVQ 350
Score = 48.1 bits (114), Expect = 7e-06
Identities = 59/384 (15%), Positives = 105/384 (27%), Gaps = 114/384 (29%)
Query: 34 FG------AFIEKLQLL-----PPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPE 82
FG + E+L+ L L + L+ L D + + G E
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV--FTQGLNILE 217
Query: 83 WARTHSAASRTSTVVSTLVEGGATC--IGKTVVDEFA-YSINGTNKHYDTPTNPAAPSQM 139
W S ++S + +C IG + A Y + + TP S +
Sbjct: 218 WLENPSNTPDKDYLLSIPI----SCPLIGVI---QLAHYVVTAKLLGF-TPGELR--SYL 267
Query: 140 PGGSSSGAAVAVAA------------DLVDFSLGIDTVGGVRVPSAFCGILGFRPSY--- 184
G + + A V ++ + GVR A+ PS
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY-PNTSLPPSILED 326
Query: 185 ------GAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------RSPRQ 232
G S M L ++ +V LP Q +
Sbjct: 327 SLENNEGVPSPM--------LSISN--LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 233 IIIA---DD----CFELLKIPADRVV-QVVIK-STEKL-FGRQVLK-----HENL----- 272
++++ L K A + Q I S KL F + L H +L
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 273 --------GEYFDSKVPSLKG--FHKTNGE---------LKNVMRLIQRYEFKNNHNEWI 313
++ + +G + ++ I R +W
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR-----LPVKWE 491
Query: 314 ESVKP----ALD--PDISAEIGEM 331
+ + LD P ++ +G +
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVL 515
Score = 41.2 bits (96), Expect = 0.001
Identities = 50/251 (19%), Positives = 76/251 (30%), Gaps = 86/251 (34%)
Query: 137 SQMPG-G----SSSGAAVAV--AAD--LVDFSLGIDTVGGVRV-PSA----FCGILG--F 180
SQ G G +S AA V AD D + G + V P F G G
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKD-TYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
R +Y A+ T +D + KI + + F RS +
Sbjct: 1685 RENYSAMIF------ETIVDG---KLKTEKIFKEINEHSTSYTF---RSEK--------- 1723
Query: 241 ELLKIPADRVVQVVIKSTEK-LFGRQVLKHEN------------LGEY-----------F 276
LL Q + EK F + LK + LGEY
Sbjct: 1724 GLLSATQ--FTQPALTLMEKAAF--EDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 277 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPA-----LDPD-------- 323
+S V + F++ G + + R E N + ++ P +
Sbjct: 1780 ESLVEVV--FYR--GMT--MQVAVPRDE-LGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 324 ISAEIGEMLEI 334
+ G ++EI
Sbjct: 1833 VGKRTGWLVEI 1843
Score = 30.4 bits (68), Expect = 1.9
Identities = 52/312 (16%), Positives = 88/312 (28%), Gaps = 118/312 (37%)
Query: 227 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLK--HENLGEYFDSKVPSLK 284
+ S A D + AD + +G +L N P
Sbjct: 1637 KTSK----AAQDVWNR----AD-------NHFKDTYGFSILDIVINN---------PVNL 1672
Query: 285 GFHKTNGELK------NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI--GEMLEISE 336
H G K N +I +E + E + ++ ++ E +S
Sbjct: 1673 TIH--FGGEKGKRIRENYSAMI--FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 337 TVIEN------CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK------LGGKEMLSED 384
T + A LK G++ P LG E
Sbjct: 1729 T--QFTQPALTLMEK------AAFEDLKSKGLI-------PADATFAGHSLG--E----- 1766
Query: 385 YQNRAFS-LLSIASV-S-----------G-CCQVTVPLGYYDKCPTSVSFIARHGGDRFL 430
++ L S+A V S G QV VP + ++ IA + G
Sbjct: 1767 -----YAALASLADVMSIESLVEVVFYRGMTMQVAVPRD--ELGRSNYGMIAINPG---- 1815
Query: 431 LDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAY--KDKQW-----LKA 483
+ AS ++A ++ T EI N Y +++Q+ L+A
Sbjct: 1816 -----RVAASFSQEALQYVVERVGKRT---GWLVEIV----N--YNVENQQYVAAGDLRA 1861
Query: 484 ISFYTEAIKLNG 495
+ T +
Sbjct: 1862 LDTVTNVLNFIK 1873
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 48.8 bits (117), Expect = 3e-06
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSF 514
+ + S +G + K +SF+ A+++ + + YS AY +
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63
Query: 515 LQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
+A + L D+ KA G ++LG + EAI
Sbjct: 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 108
Score = 40.0 bits (94), Expect = 0.001
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 25/118 (21%)
Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 501
+Q IAKE G++ AY ++ A +Y + + L + A
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIE 553
+ Y + +A K + + ++ +A G A LG + +A+
Sbjct: 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328
Score = 37.3 bits (87), Expect = 0.012
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 12/107 (11%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESG 512
A+ FY E + L G+ + N + G
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201
Query: 513 SFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
+F A + + + DK +AY G A LG ++ A E
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Score = 34.2 bits (79), Expect = 0.099
Identities = 14/124 (11%), Positives = 37/124 (29%), Gaps = 32/124 (25%)
Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 501
K++ +A++ ++ Y + KAI ++ + + + +
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKK------------NV-KAYLRRGTAREMLGYY 548
+ AY G+ QA K + + ++ N+ + G +
Sbjct: 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370
Query: 549 KEAI 552
Sbjct: 371 MSEN 374
Score = 32.7 bits (75), Expect = 0.33
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN 526
AY + KA+ ++ + L G+ A N G+F +A C + ++
Sbjct: 56 AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115
Query: 527 LDKKNVKAYLRRGTAR 542
+ + + + G AR
Sbjct: 116 ISR---ELNDKVGEAR 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 46.8 bits (111), Expect = 9e-06
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESG 512
+A +A ++ + + KA+ Y +A + N A + +
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169
Query: 513 SFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIE 553
F +A A K ++ K+ K + + + Y A +
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216
Score = 41.8 bits (98), Expect = 3e-04
Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 11/125 (8%)
Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-- 497
+A+ K+ + +A + KQ +A Y + + + NN
Sbjct: 12 EHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS 71
Query: 498 ----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-----AYLRRGTAREMLGYY 548
A + + +A KA + +N L R
Sbjct: 72 LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDL 131
Query: 549 KEAIE 553
+A+
Sbjct: 132 SKAVH 136
Score = 39.9 bits (93), Expect = 0.001
Identities = 12/121 (9%), Positives = 36/121 (29%), Gaps = 13/121 (10%)
Query: 421 IARHGGDRFLLDTVQNMYASLQEQADI--ATKS-----KLSTNTFNQKQSAEIAKEKGNQ 473
+ G + L E D+ A + N +Q+AE+ +
Sbjct: 105 MYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164
Query: 474 AYKDKQWLKAISFYTEAIKLN------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
+ +++ +A + + + + L ++ A+ ++ ++
Sbjct: 165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
Query: 528 D 528
Sbjct: 225 P 225
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 45.7 bits (109), Expect = 2e-05
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN 526
G + K +SF+ A+++ + + YS AY + +A +
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 527 L-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
L D+ KA G ++LG + EAI
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 104
Score = 39.2 bits (92), Expect = 0.003
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 25/118 (21%)
Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 501
+++ + G++ + + A+ + + + + G+ Y
Sbjct: 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226
Query: 502 SNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
SN AY+ G F A K + L D+ ++ G +L Y++AI+
Sbjct: 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284
Score = 34.9 bits (81), Expect = 0.051
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESG 512
A+ Y E + L G+ + N + G
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197
Query: 513 SFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
+F A + + + DK +AY G A LG ++ A E
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244
Score = 33.4 bits (77), Expect = 0.18
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRRGTAREMLGYYKEAIE 553
+ +SG + A+ + ++ Y + G A L Y +A+E
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Score = 32.2 bits (74), Expect = 0.37
Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
Query: 461 KQSAEIAKEKGNQ------------AYKD-KQWLKAISFYTEAIKLN---GNN---ATYY 501
K++ +A++ ++ Y + + KAI ++ + + + +
Sbjct: 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKK 530
+ AY G+ QA K + + ++
Sbjct: 307 WSLGNAYTALGNHDQAMHFAEKHLEISRE 335
Score = 31.8 bits (73), Expect = 0.52
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN 526
AY + KA+ ++ + L G+ A N G+F +A C + ++
Sbjct: 52 AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111
Query: 527 LDKKNVKAYLRRGTAR 542
+ + + + G AR
Sbjct: 112 ISR---ELNDKVGEAR 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 43.8 bits (104), Expect = 4e-05
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 26/119 (21%)
Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN----ATY 500
+ + A++ G+ + W A + E +L + +
Sbjct: 50 QALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109
Query: 501 YSNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
A L G A + K++ D+ + A+ G + EA +
Sbjct: 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168
Score = 34.9 bits (81), Expect = 0.031
Identities = 11/85 (12%), Positives = 20/85 (23%), Gaps = 12/85 (14%)
Query: 481 LKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DK 529
+A + + + + Y F +A A D
Sbjct: 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62
Query: 530 KNV-KAYLRRGTAREMLGYYKEAIE 553
+A + G M G + A
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARR 87
Score = 32.2 bits (74), Expect = 0.28
Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 26/114 (22%)
Query: 461 KQSAEIAKEKGNQAYKDKQWL--------------KAISFYTEAIKLN---GNN---ATY 500
+ E+ A Y +++ + A
Sbjct: 90 LEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149
Query: 501 YSNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYY 548
+ + + L+A+ +A ++ D + V + R ++
Sbjct: 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
Score = 29.2 bits (66), Expect = 3.1
Identities = 8/47 (17%), Positives = 13/47 (27%)
Query: 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
A E+ + AE + A G + + EA
Sbjct: 1 AAFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARA 47
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 45.2 bits (107), Expect = 4e-05
Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 17/141 (12%)
Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIA----KEKGNQAYKDKQWLKAIS 485
+L+ ++ + E+ + L + + + + +G +++L AI
Sbjct: 65 MLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIK 124
Query: 486 FYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------V 532
F+ +A A ++ + +Y + +A + K++ +
Sbjct: 125 FFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184
Query: 533 KAYLRRGTAREMLGYYKEAIE 553
+ + T L Y++AI
Sbjct: 185 QCHSLFATNFLDLKQYEDAIS 205
Score = 41.7 bits (98), Expect = 4e-04
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 13/115 (11%)
Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNR 504
++ + AE + Y KQ ++ + +A ++ N +S
Sbjct: 131 SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190
Query: 505 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIE 553
A +L+ + A + KA ++ + + G + Y++AI
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP 245
Score = 31.3 bits (71), Expect = 0.71
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 461 KQSAEIAKEKGNQ------------AYKD-KQWLKAISFYTEAIKLN------GNNATYY 501
+++ +A+ + Q+ AI ++ AI + + Y
Sbjct: 208 QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKK-NVKAYLRRGTAREMLGYYKEAIE 553
+ + G +A +K + +K YL + L E
Sbjct: 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 43.8 bits (104), Expect = 9e-05
Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 23/117 (19%)
Query: 460 QKQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLNGNN----ATYYS 502
+++ + ++F+ AI+ + + YS
Sbjct: 31 HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90
Query: 503 NRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
AY G + +A + L D+ K+ G +++G + EA
Sbjct: 91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 25/118 (21%)
Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 501
+++ ++ ++ G++ Y + AI + E +++ G+
Sbjct: 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN 266
Query: 502 SNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
SN +++ G F A + + L +++ ++ G +L + AIE
Sbjct: 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324
Score = 37.3 bits (87), Expect = 0.010
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESG 512
+ + + +A+ FY E +KL G+ N Y G
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237
Query: 513 SFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
F A + + + D+ +A G + LG +++A E
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284
Score = 31.9 bits (73), Expect = 0.62
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 19/86 (22%)
Query: 461 KQSAEIAKEKGNQ------------AYKD-KQWLKAISFYTEAIKLN---GNN---ATYY 501
K++ +A E G + Y ++ AI ++ + + G+ A
Sbjct: 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC 346
Query: 502 SNRAAAYLESGSFLQAEADCTKAINL 527
+ A+ G +A + + L
Sbjct: 347 WSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 30.3 bits (69), Expect = 1.8
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 10/76 (13%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN 526
AY + KA+ ++ + L + A N G F +A C + +
Sbjct: 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154
Query: 527 LDKKNVKAYLRRGTAR 542
L + + R R
Sbjct: 155 LAR---QLGDRLSEGR 167
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 42.9 bits (101), Expect = 2e-04
Identities = 16/132 (12%), Positives = 43/132 (32%), Gaps = 13/132 (9%)
Query: 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
Y + ++ + +G + K++++AI +Y EA K
Sbjct: 72 GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131
Query: 495 GNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTA 541
A ++ A AY + +A+++ + + +++
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191
Query: 542 REMLGYYKEAIE 553
+ +Y +A+
Sbjct: 192 YDDFKHYDKALP 203
Score = 40.6 bits (95), Expect = 0.001
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 13/115 (11%)
Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNR 504
K + + AE + Y KQ ++ +A+ + +
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188
Query: 505 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIE 553
A Y + + +A A+ L + L + + G + A+E
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243
Score = 38.3 bits (89), Expect = 0.006
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKL---NGNN---ATYYSNRAAAYLESGSFLQAEADCTKA 524
K + KA+ A++L N+ A N A +Y SG A KA
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 525 INLDKKN-----VKAYLRRGTAREMLGYYKEAIE 553
+ ++ K G ++A +
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282
Score = 35.9 bits (83), Expect = 0.026
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 461 KQSAEIAKEKGNQAYKD---------------KQWLKAISFYTEAIKLNGNNATYYSNRA 505
++ + + ++ YK+ ++ +S++ E L+ + A
Sbjct: 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAA 343
Query: 506 AAYLESGSFLQAEADCTKAINLDKK 530
A + S F QA A K + +
Sbjct: 344 AVFESSCHFEQAAAFYRKVLKAQED 368
Score = 35.9 bits (83), Expect = 0.029
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 461 KQSAEIAKEK------------GNQAYKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAA 507
+++A++++EK K Q KA F E + + +Y
Sbjct: 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305
Query: 508 YLESGSFLQAEADCTKAIN-LDKKNVKAYLRR-----GTAREMLGYYKEAIE 553
E ++ +KKN+ AY+ E ++++A
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAA 357
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 41.3 bits (96), Expect = 5e-04
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 13/115 (11%)
Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNR 504
+ Q+ I N ++ K I + + +K + N
Sbjct: 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202
Query: 505 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIE 553
A A + ++ KAI + + + Y +RG L Y + IE
Sbjct: 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIE 257
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 38.2 bits (88), Expect = 0.002
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 21/93 (22%)
Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE----------ADCTKAINLDKKN 531
+ K N +A + LE F +A+ +D K
Sbjct: 20 QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79
Query: 532 VKAYLRRGTA-----------REMLGYYKEAIE 553
+A G A E + A +
Sbjct: 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQ 112
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 37.5 bits (88), Expect = 0.003
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 25/118 (21%)
Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 501
+Q IAKE G++ AY ++ A +Y + + L + A
Sbjct: 33 EQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIE 553
+ Y + +A K + + ++ +A G A LG + +A+
Sbjct: 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150
Score = 35.2 bits (82), Expect = 0.021
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN---GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN 526
+ + A+ + + + + G+ YSN AY+ G F A K +
Sbjct: 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77
Query: 527 L-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
L D+ ++ G +L Y++AI+
Sbjct: 78 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 110
Score = 28.7 bits (65), Expect = 3.2
Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 19/89 (21%)
Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 501
K++ +A++ ++ Y + KAI ++ + + + +
Sbjct: 73 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 132
Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKK 530
+ AY G+ QA K + + ++
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHLEISRE 161
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 38.5 bits (89), Expect = 0.004
Identities = 14/121 (11%), Positives = 42/121 (34%), Gaps = 8/121 (6%)
Query: 440 SLQEQADIATKSKLS-------TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492
L ++A+ ++++ +++A++ + K+ A + +A
Sbjct: 6 ELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAAD 65
Query: 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
Y+E+ ++ + A++ + ++ + RG R + E
Sbjct: 66 YQKKAGNEDEA-GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124
Query: 553 E 553
E
Sbjct: 125 E 125
Score = 31.9 bits (72), Expect = 0.47
Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 13/115 (11%)
Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRA 505
N+ ++ E + A+ AI++ + A +
Sbjct: 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124
Query: 506 AAYL-ESGSFLQAEADCTKAINLDKK------NVKAYLRRGTAREMLGYYKEAIE 553
+ + +A A + + K +++ + + G Y EA +
Sbjct: 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 35.3 bits (81), Expect = 0.023
Identities = 7/56 (12%), Positives = 20/56 (35%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
E ++ ++ + + +A++ + +A LE+ F A+
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 33.3 bits (77), Expect = 0.17
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 18/98 (18%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 524
+++ ++ + +Y A+++ G + A +N A+ YL+ G F QAE +
Sbjct: 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221
Query: 525 INLDKKNV---------KAYLRRGTAREMLGYYKEAIE 553
+ + ++ E G K+
Sbjct: 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259
Score = 30.2 bits (69), Expect = 1.8
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 524
Y + ++ +A A+++ G + A +N A G + + E +A
Sbjct: 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179
Query: 525 INLDKK-------NV-KAYLRRGTAREMLGYYKEAIE 553
+ + + NV K + G +K+A
Sbjct: 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216
Score = 29.0 bits (66), Expect = 3.8
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 524
Y + ++ A+ +A++ G++ AT + A Y + + A A
Sbjct: 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95
Query: 525 INLDKKNV--------KAYLRRGTAREMLGYYKEAIE 553
+ + +K + G YKEA
Sbjct: 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 132
Score = 28.7 bits (65), Expect = 4.4
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 524
Y+D+ ++ A + +A+ + G + A +N A Y + G + +AE C +A
Sbjct: 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 137
Query: 525 INLDKKN--------VKAYLRRGTAREMLGYYKEAIE 553
+ + +K K + G Y+E
Sbjct: 138 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 31.7 bits (73), Expect = 0.54
Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 524
+++ + + +Y A+++ G + A +N A+ YL+ G + AE +
Sbjct: 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
Query: 525 INLDKKNV---------KAYLRRGTAREMLGYYKEAIE 553
+ + ++ E +++
Sbjct: 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233
Score = 29.8 bits (68), Expect = 2.1
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 474 AYKDK-QWLKAISFYTEAI----KLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKA 524
Y+D+ ++ +A +A+ K G + A +N A Y + G + +AE C +A
Sbjct: 52 VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 111
Query: 525 INLDKKNV--------KAYLRRGTAREMLGYYKEAIE 553
+ + +K + K + G +E
Sbjct: 112 LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148
Score = 29.4 bits (67), Expect = 2.5
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 474 AYKDK-QWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 524
Y + ++ +A A+++ G A +N A G + E +A
Sbjct: 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153
Query: 525 INLDKK-------NV-KAYLRRGTAREMLGYYKEAIE 553
+ + NV K + G Y++A
Sbjct: 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 31.2 bits (71), Expect = 0.65
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 13/76 (17%)
Query: 173 AFCGILG-----FRPSYGAVSH--------MGIIPISTSLDTVGWFARDPKILRHVGHVL 219
A I G R Y + +G I T+LDT + P+
Sbjct: 129 ATRRIDGFAPKYMRAPYLSCDAGCQGDLGGLGYHIIDTNLDTKDYENNKPETTHLSAEKF 188
Query: 220 LQLPFAAQRSPRQIII 235
A + I++
Sbjct: 189 NNELSADVGANSYIVL 204
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.80
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 439 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLK 482
AS + + K+K +NQ+QS ++ K K N DK + +
Sbjct: 104 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 30.7 bits (68), Expect = 1.2
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525
Q +A S+Y A +L +N Y+ A G L ++I
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Length = 326
Score = 29.5 bits (67), Expect = 2.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 132 NPAAPSQMPG--GSSSGAAVAVAADLVDFSLGIDTVGGVRVP-SAFCGILG 179
NP A PG G S+GA V + A ++ LG + + SA G L
Sbjct: 83 NPLAE---PGLLGVSNGAGVGLIAAVL---LGQGQLPNWALGLSAIAGALI 127
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB:
1tjc_A
Length = 104
Score = 28.0 bits (62), Expect = 2.7
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 471 GNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
G AY + + + +A++ G +T YL + Q + D KA+ L
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD--KALLLT 69
Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
KK ++ A L Y++ +
Sbjct: 70 KKLLELDPEHQRANGNLKYFEYIMA 94
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 27.5 bits (61), Expect = 3.3
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 494 NGNNATYYSNRA-AAYLESGSFL--QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 550
N AT + +A Y + + +A+ L+ N A + ++E
Sbjct: 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQE 61
Query: 551 AIE 553
AI+
Sbjct: 62 AID 64
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A
{Methanocaldococcus jannaschii}
Length = 88
Score = 27.4 bits (61), Expect = 4.1
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 11/67 (16%)
Query: 24 KKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFA----VSD---LFDIEG--- 73
K + +I++ IE+ Q L + G V + ++ G
Sbjct: 14 KHVPGHIRKRIKLIIEECQNSNSLNDLKLDIK-KIKGYHNYYRIRVGNYSIGIEVNGDTI 72
Query: 74 YVTGFGH 80
H
Sbjct: 73 IFRRVLH 79
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.4 bits (63), Expect = 5.4
Identities = 30/171 (17%), Positives = 47/171 (27%), Gaps = 51/171 (29%)
Query: 200 DTVGWF---ARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRV---VQV 253
DT G F + + + + SP + LL +P R
Sbjct: 84 DTPGIFDTEVPNAETSKEIIR------CILLTSPGPHAL------LLVVPLGRYTEEEHK 131
Query: 254 VIKSTEKLFGRQVLKH-------------ENLGEYFDSKVPSLKGFHKTNGELKNVMRLI 300
+ K+FG + NL +Y ++ G
Sbjct: 132 ATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG--------- 182
Query: 301 QRYEFKNNHNEWIESVKPALDPDISAEIGEMLE-ISETVIENCKS-IRNEM 349
RY NN A + A+ ++L I V EN + N M
Sbjct: 183 DRYCALNNK---------ATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRM 224
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 28.3 bits (64), Expect = 7.5
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 23 TKKLKKNIKQDFGA-FIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81
+ +K+NI FG ++ L P S A+ +LF I G++
Sbjct: 220 SPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFI---SQC 276
Query: 82 EWARTHSAASR 92
S+ R
Sbjct: 277 THGVGRSSTDR 287
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 7.7
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 259 EKLFGRQVLKHEN-LGEYFDSKVPSL 283
EK + + K + L Y D P+L
Sbjct: 18 EK---QALKKLQASLKLYADDSAPAL 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,533,901
Number of extensions: 527021
Number of successful extensions: 1993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1715
Number of HSP's successfully gapped: 363
Length of query: 554
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 456
Effective length of database: 3,965,535
Effective search space: 1808283960
Effective search space used: 1808283960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)