Query 008757
Match_columns 554
No_of_seqs 268 out of 2562
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 16:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 7E-108 1E-112 826.3 43.5 520 2-554 50-574 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 9E-100 2E-104 815.9 43.6 543 2-554 95-645 (645)
3 PRK10953 cysJ sulfite reductas 100.0 1.9E-97 4E-102 813.7 56.6 490 1-554 110-600 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 3.9E-95 8E-100 799.8 56.4 489 1-554 107-597 (597)
5 COG0369 CysJ Sulfite reductase 100.0 1.3E-94 2.9E-99 778.8 47.2 490 2-554 97-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 2.1E-79 4.6E-84 650.0 46.2 394 152-554 3-416 (416)
7 cd06203 methionine_synthase_re 100.0 8.8E-78 1.9E-82 634.7 43.9 381 159-554 2-398 (398)
8 cd06207 CyPoR_like NADPH cytoc 100.0 2.3E-77 4.9E-82 629.5 44.0 378 159-554 2-382 (382)
9 cd06202 Nitric_oxide_synthase 100.0 5.8E-77 1.3E-81 629.5 46.0 386 159-554 2-402 (406)
10 cd06206 bifunctional_CYPOR The 100.0 3.4E-74 7.3E-79 605.9 44.4 375 158-554 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 9.4E-72 2E-76 581.7 39.3 356 158-554 1-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 7.6E-71 1.6E-75 591.8 39.8 368 148-554 162-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 2.9E-47 6.4E-52 370.9 20.7 216 149-371 3-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 5.7E-39 1.2E-43 332.0 26.1 272 149-554 85-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 7.6E-38 1.6E-42 313.7 30.0 218 330-554 47-267 (267)
16 cd06201 SiR_like2 Cytochrome p 100.0 2.3E-33 5E-38 284.6 29.8 189 331-554 100-289 (289)
17 cd06200 SiR_like1 Cytochrome p 100.0 2.7E-34 5.8E-39 284.9 20.6 212 315-554 31-245 (245)
18 TIGR03224 benzo_boxA benzoyl-C 100.0 4.5E-33 9.8E-38 294.6 30.0 270 148-554 136-411 (411)
19 PLN03116 ferredoxin--NADP+ red 100.0 1.8E-33 3.9E-38 287.8 20.5 213 330-554 80-307 (307)
20 cd06208 CYPOR_like_FNR These f 100.0 6.1E-33 1.3E-37 281.4 21.5 225 317-554 42-286 (286)
21 PRK05723 flavodoxin; Provision 99.9 2.2E-25 4.7E-30 203.4 11.6 99 1-100 49-150 (151)
22 cd00322 FNR_like Ferredoxin re 99.9 4.4E-24 9.5E-29 208.3 13.0 187 315-524 22-213 (223)
23 PRK09004 FMN-binding protein M 99.9 3.9E-24 8.4E-29 194.6 11.2 97 1-99 48-146 (146)
24 cd06188 NADH_quinone_reductase 99.9 4.3E-24 9.2E-29 216.5 12.1 177 331-524 86-271 (283)
25 cd06189 flavin_oxioreductase N 99.9 5.9E-24 1.3E-28 208.1 12.5 184 314-524 24-212 (224)
26 PRK08051 fre FMN reductase; Va 99.9 8.1E-24 1.8E-28 208.3 12.1 183 315-524 29-217 (232)
27 PRK07609 CDP-6-deoxy-delta-3,4 99.9 6.8E-24 1.5E-28 220.6 12.0 183 315-524 131-320 (339)
28 PRK10926 ferredoxin-NADP reduc 99.9 2.1E-23 4.6E-28 207.2 15.0 185 317-524 32-228 (248)
29 PRK08105 flavodoxin; Provision 99.9 9.7E-24 2.1E-28 192.6 11.2 96 1-99 50-147 (149)
30 cd06211 phenol_2-monooxygenase 99.9 1.4E-23 3.1E-28 207.3 12.7 184 315-524 35-226 (238)
31 cd06190 T4MO_e_transfer_like T 99.9 1.3E-23 2.8E-28 206.8 11.3 187 315-524 23-218 (232)
32 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.8E-23 3.9E-28 207.0 12.4 186 316-526 25-225 (241)
33 cd06210 MMO_FAD_NAD_binding Me 99.9 8E-24 1.7E-28 208.8 9.3 184 315-524 34-223 (236)
34 PRK13289 bifunctional nitric o 99.9 2E-23 4.2E-28 222.0 12.9 184 316-524 185-380 (399)
35 cd06209 BenDO_FAD_NAD Benzoate 99.9 2.7E-23 5.9E-28 204.0 12.7 180 315-524 30-215 (228)
36 PRK05464 Na(+)-translocating N 99.9 1.5E-23 3.3E-28 222.9 11.8 180 330-524 209-395 (409)
37 PRK11872 antC anthranilate dio 99.9 2.4E-23 5.2E-28 216.2 12.9 181 315-524 136-323 (340)
38 cd06187 O2ase_reductase_like T 99.9 2.8E-23 6E-28 203.2 10.7 182 316-524 24-212 (224)
39 TIGR01941 nqrF NADH:ubiquinone 99.9 4.6E-23 1E-27 219.0 13.2 181 329-524 204-391 (405)
40 PRK08345 cytochrome-c3 hydroge 99.9 4.2E-23 9E-28 209.7 12.0 180 316-524 38-234 (289)
41 PRK10684 HCP oxidoreductase, N 99.9 6.5E-23 1.4E-27 212.5 12.4 184 316-524 37-225 (332)
42 cd06212 monooxygenase_like The 99.9 8.8E-23 1.9E-27 200.9 12.7 183 315-524 29-219 (232)
43 cd06191 FNR_iron_sulfur_bindin 99.9 2.1E-22 4.6E-27 198.0 14.7 184 316-523 28-218 (231)
44 cd06194 FNR_N-term_Iron_sulfur 99.9 2.7E-22 5.9E-27 196.0 14.4 185 315-524 23-209 (222)
45 PRK05713 hypothetical protein; 99.9 1.9E-22 4.1E-27 207.2 11.9 176 316-524 119-296 (312)
46 cd06213 oxygenase_e_transfer_s 99.9 3.5E-22 7.6E-27 196.0 12.7 180 316-524 28-215 (227)
47 cd06221 sulfite_reductase_like 99.9 5.3E-22 1.1E-26 197.9 12.4 181 315-524 27-212 (253)
48 cd06216 FNR_iron_sulfur_bindin 99.9 1.5E-21 3.3E-26 193.4 12.7 168 330-525 63-233 (243)
49 cd06184 flavohem_like_fad_nad_ 99.9 3.2E-21 7E-26 191.6 14.6 166 330-524 56-231 (247)
50 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.3E-21 2.7E-26 204.6 11.3 189 315-525 32-230 (352)
51 cd06215 FNR_iron_sulfur_bindin 99.9 5.4E-21 1.2E-25 187.9 14.9 185 316-524 28-219 (231)
52 cd06218 DHOD_e_trans FAD/NAD b 99.9 2.6E-21 5.7E-26 192.0 11.9 172 316-525 25-203 (246)
53 cd06214 PA_degradation_oxidore 99.9 3.7E-21 8E-26 190.4 12.6 187 315-524 32-228 (241)
54 cd06196 FNR_like_1 Ferredoxin 99.9 6.3E-21 1.4E-25 185.8 13.8 177 315-524 27-208 (218)
55 cd06198 FNR_like_3 NAD(P) bind 99.9 2.1E-21 4.6E-26 188.9 10.4 178 315-524 22-203 (216)
56 PRK08221 anaerobic sulfite red 99.9 2.2E-21 4.7E-26 194.4 10.7 177 316-524 33-214 (263)
57 cd06217 FNR_iron_sulfur_bindin 99.8 2.9E-21 6.2E-26 190.4 10.4 181 316-524 31-223 (235)
58 PTZ00274 cytochrome b5 reducta 99.8 8.7E-21 1.9E-25 194.5 14.1 167 330-520 102-281 (325)
59 cd06183 cyt_b5_reduct_like Cyt 99.8 5.6E-21 1.2E-25 188.0 11.7 182 315-523 28-223 (234)
60 COG1018 Hmp Flavodoxin reducta 99.8 9.5E-21 2.1E-25 188.6 12.9 180 316-526 35-220 (266)
61 TIGR02911 sulfite_red_B sulfit 99.8 7.7E-21 1.7E-25 190.2 11.4 177 316-524 31-212 (261)
62 cd06185 PDR_like Phthalate dio 99.8 2.3E-20 5E-25 180.9 12.7 174 315-524 25-198 (211)
63 PTZ00319 NADH-cytochrome B5 re 99.8 5.9E-20 1.3E-24 187.4 15.0 179 330-524 85-290 (300)
64 cd06197 FNR_like_2 FAD/NAD(P) 99.8 2.1E-20 4.6E-25 182.4 10.0 147 331-523 60-211 (220)
65 COG0543 UbiB 2-polyprenylpheno 99.8 7E-20 1.5E-24 182.1 12.5 179 315-525 35-215 (252)
66 PRK00054 dihydroorotate dehydr 99.8 3.5E-20 7.5E-25 184.5 10.0 167 315-524 31-203 (250)
67 cd06220 DHOD_e_trans_like2 FAD 99.8 7.4E-20 1.6E-24 180.2 11.1 166 315-525 23-190 (233)
68 COG2871 NqrF Na+-transporting 99.8 1.3E-19 2.8E-24 173.6 10.6 186 330-530 210-402 (410)
69 cd06192 DHOD_e_trans_like FAD/ 99.8 1.7E-19 3.6E-24 178.9 10.8 172 316-525 25-201 (243)
70 cd06219 DHOD_e_trans_like1 FAD 99.8 1.4E-19 3E-24 180.0 9.6 172 315-523 26-201 (248)
71 PRK06222 ferredoxin-NADP(+) re 99.8 1.2E-19 2.6E-24 183.6 8.7 172 316-524 28-203 (281)
72 PRK05802 hypothetical protein; 99.8 3.5E-19 7.6E-24 182.7 8.0 169 317-524 96-276 (320)
73 KOG0534 NADH-cytochrome b-5 re 99.8 1E-17 2.3E-22 165.8 14.6 181 316-523 82-275 (286)
74 PLN02252 nitrate reductase [NA 99.8 4.4E-18 9.6E-23 194.1 13.4 189 316-523 665-877 (888)
75 COG4097 Predicted ferric reduc 99.7 4.2E-17 9E-22 162.4 12.5 164 328-524 259-423 (438)
76 PTZ00306 NADH-dependent fumara 99.7 2.2E-17 4.8E-22 195.7 12.6 183 316-524 948-1151(1167)
77 PF00258 Flavodoxin_1: Flavodo 99.7 7.2E-18 1.6E-22 153.2 6.2 91 1-91 47-143 (143)
78 PF00175 NAD_binding_1: Oxidor 99.7 2.5E-17 5.4E-22 142.2 8.0 104 408-519 1-109 (109)
79 PRK12778 putative bifunctional 99.7 4.8E-17 1E-21 186.0 9.4 172 316-524 28-203 (752)
80 cd06186 NOX_Duox_like_FAD_NADP 99.7 3.4E-16 7.4E-21 151.5 9.8 169 315-523 24-197 (210)
81 cd06193 siderophore_interactin 99.6 2E-16 4.3E-21 156.1 6.5 157 330-523 63-219 (235)
82 PRK12779 putative bifunctional 99.6 1.7E-15 3.7E-20 175.2 12.4 179 316-524 677-869 (944)
83 PRK07308 flavodoxin; Validated 99.5 2.6E-14 5.5E-19 130.4 10.3 92 1-96 50-143 (146)
84 PRK12775 putative trifunctiona 99.5 1.5E-14 3.1E-19 168.9 9.5 171 316-524 28-203 (1006)
85 KOG1160 Fe-S oxidoreductase [E 99.5 4.4E-14 9.5E-19 142.8 9.6 95 2-101 94-194 (601)
86 PRK12359 flavodoxin FldB; Prov 99.4 1.1E-12 2.5E-17 122.0 11.1 97 1-101 47-170 (172)
87 PRK06703 flavodoxin; Provision 99.4 1.3E-12 2.9E-17 119.8 10.9 96 1-100 50-148 (151)
88 PLN02844 oxidoreductase/ferric 99.4 6.8E-13 1.5E-17 147.8 10.0 185 314-512 337-537 (722)
89 PLN02292 ferric-chelate reduct 99.4 2.5E-12 5.5E-17 142.9 13.7 178 317-511 353-547 (702)
90 PLN02631 ferric-chelate reduct 99.4 1.6E-12 3.5E-17 144.2 9.1 149 314-478 333-492 (699)
91 TIGR01752 flav_long flavodoxin 99.2 1E-10 2.2E-15 109.2 10.6 70 1-74 46-117 (167)
92 PRK09271 flavodoxin; Provision 99.2 8.5E-11 1.9E-15 108.9 9.7 89 2-99 54-147 (160)
93 TIGR01754 flav_RNR ribonucleot 99.2 1.1E-10 2.3E-15 105.7 8.8 83 1-95 52-139 (140)
94 TIGR01753 flav_short flavodoxi 99.1 1.7E-10 3.8E-15 104.0 9.4 90 1-95 47-139 (140)
95 COG0716 FldA Flavodoxins [Ener 99.1 4.8E-10 1E-14 102.8 10.4 94 1-98 50-150 (151)
96 PRK06756 flavodoxin; Provision 99.1 5E-10 1.1E-14 102.3 10.0 92 1-97 51-145 (148)
97 TIGR00333 nrdI ribonucleoside- 99.0 3.6E-10 7.8E-15 99.1 6.0 54 4-66 39-93 (125)
98 KOG3378 Globins and related he 98.9 7E-10 1.5E-14 106.5 2.7 164 332-528 202-372 (385)
99 PRK09267 flavodoxin FldA; Vali 98.8 2.3E-08 4.9E-13 93.5 10.6 95 1-99 48-167 (169)
100 PF08030 NAD_binding_6: Ferric 98.7 2.9E-08 6.3E-13 91.2 6.3 71 406-476 4-77 (156)
101 PRK03600 nrdI ribonucleotide r 98.6 8.5E-08 1.8E-12 85.6 7.2 81 2-97 41-130 (134)
102 PRK02551 flavoprotein NrdI; Pr 98.3 1.1E-06 2.3E-11 80.1 5.6 80 3-93 57-144 (154)
103 KOG0039 Ferric reductase, NADH 98.2 1.5E-05 3.3E-10 89.5 12.6 194 318-526 384-633 (646)
104 PRK11921 metallo-beta-lactamas 97.8 4E-05 8.7E-10 81.5 7.6 89 1-98 302-392 (394)
105 PRK06567 putative bifunctional 97.8 4.7E-05 1E-09 87.4 7.8 82 316-417 819-907 (1028)
106 PF07972 Flavodoxin_NdrI: NrdI 97.3 0.00031 6.7E-09 61.5 4.5 74 3-90 41-119 (122)
107 PRK05452 anaerobic nitric oxid 97.3 0.0006 1.3E-08 74.2 7.7 90 1-100 306-397 (479)
108 PF00970 FAD_binding_6: Oxidor 97.1 0.00016 3.4E-09 61.0 0.3 67 315-397 29-98 (99)
109 PRK05568 flavodoxin; Provision 97.0 0.0024 5.3E-08 57.5 8.1 65 1-74 50-116 (142)
110 PRK05569 flavodoxin; Provision 96.9 0.004 8.7E-08 56.0 7.9 67 1-74 50-117 (141)
111 PRK06242 flavodoxin; Provision 96.6 0.0071 1.5E-07 55.0 7.7 64 1-74 45-108 (150)
112 COG1780 NrdI Protein involved 96.5 0.0099 2.1E-07 52.3 7.2 84 3-100 43-134 (141)
113 PRK07116 flavodoxin; Provision 95.1 0.081 1.8E-06 48.8 7.7 80 1-95 78-158 (160)
114 TIGR01755 flav_wrbA NAD(P)H:qu 94.6 0.12 2.6E-06 49.5 7.6 71 1-72 70-140 (197)
115 PRK03767 NAD(P)H:quinone oxido 94.1 0.18 3.8E-06 48.4 7.7 71 1-72 71-141 (200)
116 COG2375 ViuB Siderophore-inter 93.5 0.47 1E-05 47.1 9.4 166 328-535 84-250 (265)
117 KOG0560 Sulfite reductase (fer 92.1 0.062 1.4E-06 56.5 1.2 63 42-104 1-71 (638)
118 PF03358 FMN_red: NADPH-depend 89.5 0.98 2.1E-05 40.8 6.5 69 1-72 72-140 (152)
119 TIGR03567 FMN_reduc_SsuE FMN r 88.5 1.4 3.1E-05 40.9 6.9 68 1-74 67-134 (171)
120 PRK10569 NAD(P)H-dependent FMN 87.1 4.9 0.00011 38.2 9.8 66 1-72 68-133 (191)
121 PRK11104 hemG protoporphyrinog 83.7 1.6 3.5E-05 40.9 4.6 40 1-46 48-87 (177)
122 TIGR03566 FMN_reduc_MsuE FMN r 82.0 4.3 9.3E-05 37.8 6.8 66 1-72 70-135 (174)
123 PF12682 Flavodoxin_4: Flavodo 77.6 7.6 0.00016 35.6 6.7 81 1-95 75-156 (156)
124 PF12724 Flavodoxin_5: Flavodo 76.3 7.6 0.00016 34.8 6.3 43 1-49 45-87 (143)
125 PLN03116 ferredoxin--NADP+ red 74.6 7.1 0.00015 40.0 6.4 49 151-200 21-69 (307)
126 cd06208 CYPOR_like_FNR These f 73.0 8.4 0.00018 39.0 6.4 48 151-199 5-52 (286)
127 PRK09739 hypothetical protein; 72.1 29 0.00062 33.0 9.5 100 1-101 81-196 (199)
128 PRK13556 azoreductase; Provisi 71.1 37 0.00079 32.5 10.1 96 1-98 91-200 (208)
129 PRK00170 azoreductase; Reviewe 70.3 30 0.00066 32.6 9.3 98 1-100 88-196 (201)
130 PF02525 Flavodoxin_2: Flavodo 67.1 43 0.00094 31.6 9.6 98 1-99 80-199 (199)
131 PF08022 FAD_binding_8: FAD-bi 67.0 1.8 4E-05 36.7 0.0 60 304-376 16-82 (105)
132 KOG1160 Fe-S oxidoreductase [E 64.8 8.1 0.00018 40.9 4.1 72 3-74 410-487 (601)
133 PRK01355 azoreductase; Reviewe 63.5 47 0.001 31.6 9.0 100 1-101 79-194 (199)
134 PF12641 Flavodoxin_3: Flavodo 61.0 25 0.00054 32.4 6.3 56 1-66 41-98 (160)
135 TIGR02667 moaB_proteo molybden 54.7 11 0.00024 34.7 2.9 58 35-92 2-59 (163)
136 PRK04930 glutathione-regulated 54.6 1.6E+02 0.0035 27.7 10.7 101 1-102 63-178 (184)
137 PRK13555 azoreductase; Provisi 48.0 1.8E+02 0.0039 27.9 10.2 71 1-72 91-175 (208)
138 PF08021 FAD_binding_9: Sidero 44.1 14 0.00029 32.1 1.6 54 328-396 64-117 (117)
139 PF00970 FAD_binding_6: Oxidor 43.3 67 0.0014 26.3 5.7 38 157-199 2-41 (99)
140 COG0426 FpaA Uncharacterized f 39.9 80 0.0017 33.4 6.7 63 2-74 300-363 (388)
141 KOG4723 Uncharacterized conser 39.3 29 0.00064 33.0 3.1 116 435-554 18-139 (248)
142 PRK06934 flavodoxin; Provision 39.2 1.3E+02 0.0028 29.3 7.7 81 1-95 131-217 (221)
143 cd06200 SiR_like1 Cytochrome p 39.0 58 0.0013 32.0 5.4 36 165-200 8-44 (245)
144 TIGR02690 resist_ArsH arsenica 34.1 1.5E+02 0.0032 28.9 7.2 68 2-72 93-161 (219)
145 PF11132 SplA: Transcriptional 34.0 31 0.00067 27.1 1.9 16 187-202 5-20 (75)
146 COG3937 Uncharacterized conser 33.1 55 0.0012 27.8 3.4 38 511-548 19-56 (108)
147 PF04703 FaeA: FaeA-like prote 32.9 89 0.0019 23.9 4.3 25 527-551 23-47 (62)
148 TIGR00106 uncharacterized prot 32.7 65 0.0014 27.0 3.9 54 36-89 31-87 (97)
149 cd00758 MoCF_BD MoCF_BD: molyb 31.9 35 0.00076 30.1 2.3 54 39-92 1-56 (133)
150 COG0655 WrbA Multimeric flavod 31.2 1.2E+02 0.0026 28.9 6.1 70 1-71 77-147 (207)
151 cd06212 monooxygenase_like The 28.8 1.2E+02 0.0025 29.3 5.6 40 156-200 2-42 (232)
152 COG0431 Predicted flavoprotein 28.3 1.6E+02 0.0035 27.5 6.3 66 1-72 69-134 (184)
153 PF03445 DUF294: Putative nucl 27.9 1.9E+02 0.0041 25.7 6.3 58 36-97 46-130 (138)
154 PRK00871 glutathione-regulated 27.9 3.6E+02 0.0079 25.2 8.5 99 1-100 57-168 (176)
155 TIGR00177 molyb_syn molybdenum 26.8 43 0.00093 30.0 2.0 54 39-92 2-64 (144)
156 cd06217 FNR_iron_sulfur_bindin 26.3 1.3E+02 0.0029 28.8 5.5 40 156-200 3-43 (235)
157 cd00886 MogA_MoaB MogA_MoaB fa 25.8 64 0.0014 29.2 3.0 54 38-91 1-56 (152)
158 cd05191 NAD_bind_amino_acid_DH 25.0 1.7E+02 0.0038 23.3 5.2 32 33-72 19-50 (86)
159 COG0279 GmhA Phosphoheptose is 24.2 98 0.0021 28.7 3.7 25 487-511 27-51 (176)
160 cd01075 NAD_bind_Leu_Phe_Val_D 24.1 1.1E+02 0.0023 29.2 4.3 33 32-72 23-55 (200)
161 cd05211 NAD_bind_Glu_Leu_Phe_V 23.0 78 0.0017 30.7 3.1 31 34-72 20-50 (217)
162 PF02080 TrkA_C: TrkA-C domain 22.6 1.2E+02 0.0027 22.9 3.7 30 182-213 42-71 (71)
163 PRK00054 dihydroorotate dehydr 22.1 1.9E+02 0.0042 28.2 5.9 41 155-201 5-45 (250)
164 PF02826 2-Hacid_dh_C: D-isome 21.6 82 0.0018 29.2 2.9 32 33-72 32-63 (178)
165 PF06753 Bradykinin: Bradykini 21.5 31 0.00067 19.2 -0.0 10 413-422 6-15 (19)
166 cd06209 BenDO_FAD_NAD Benzoate 21.5 2.2E+02 0.0047 27.3 6.0 40 156-200 3-43 (228)
167 PF13580 SIS_2: SIS domain; PD 21.2 1.4E+02 0.0031 26.4 4.3 24 487-510 21-44 (138)
168 cd06184 flavohem_like_fad_nad_ 21.2 2.6E+02 0.0056 27.1 6.6 42 155-201 7-50 (247)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=6.9e-108 Score=826.30 Aligned_cols=520 Identities=32% Similarity=0.592 Sum_probs=448.0
Q ss_pred eEEEEeccCCCCCcCchHHHHHHHHh-hccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 2 KIYVIGCRYGDGEPTDNAARFYKWFT-EKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~-~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
++||||||+|+|+.|+||++||++|. +..+...|++++|||||||||+|++||.++|++++||.+|||+.++++|+||+
T Consensus 50 ~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDd 129 (574)
T KOG1159|consen 50 LVVFVCSTTGQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDD 129 (574)
T ss_pred eEEEEEecCCCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccc
Confidence 68999999999999999999999998 55677789999999999999999999999999999999999999999999999
Q ss_pred CC--CcHhhHHHHHHHHhHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeEE
Q 008757 81 DQ--CIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSN 158 (554)
Q Consensus 81 ~~--~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (554)
++ |.+..|.+|+..||..|..+.....+......+ ......|++-...... ..+ ........+....++
T Consensus 130 Qh~~G~eg~~~pW~~~lw~~L~~i~~p~~~~t~l~~~-~~~~~k~~~l~~~~~~------~~~--d~~~v~~~~~~~~~k 200 (574)
T KOG1159|consen 130 QHEEGIEGVFDPWLKELWSYLKGIYPPYRPETDLIPT-VQITTKYSLLELGKAS------DFS--DSDIVLEPQGQIPAK 200 (574)
T ss_pred cccccchhhhHHHHHHHHHHHHhhcCCCCCcccCCCc-ccccchhhhhhccccc------cCC--cchhhhccccccccc
Confidence 65 789999999999999999887521111011111 1122223322211110 000 000111111122378
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 008757 159 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 238 (554)
Q Consensus 159 v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
++.|+++|+.++.++|+|++|++.+....|+|||++.|+|.|+.+.|+++++.+||++++...+.....+ .....|
T Consensus 201 ~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~----~~~~~~ 276 (574)
T KOG1159|consen 201 LVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSND----RSSPLP 276 (574)
T ss_pred hhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCc----cccccc
Confidence 9999999999999999999999998899999999999999999999999999999999877665433221 011222
Q ss_pred CCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 008757 239 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 317 (554)
Q Consensus 239 ~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp~~~~p 317 (554)
-+| |+|+++++++|+|+++.|+++||..|+.|++|+.||++|++++|++|.++|++|+.+++||++|+|++|++.++|
T Consensus 277 -~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp 355 (574)
T KOG1159|consen 277 -LLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLP 355 (574)
T ss_pred -ccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCC
Confidence 467 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCC
Q 008757 318 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 397 (554)
Q Consensus 318 ~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~ 397 (554)
++++++.+ |.++||+|||||+|..+ .++|+|++|.++|.....|.|+||+||+++.+++ .+++.+++|.+.
T Consensus 356 ~~yl~d~~-P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l~ 426 (574)
T KOG1159|consen 356 IDYLLDLL-PVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTLY 426 (574)
T ss_pred HHHHHHhc-cccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCccc
Confidence 99999875 99999999999999854 4999999999999999999999999999998865 378999999999
Q ss_pred CCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCC
Q 008757 398 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 477 (554)
Q Consensus 398 lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~ 477 (554)
+|.+.+.|+||||+|||||||||++++|..++. .+..||||||+++.||+|.+||.+..+.+. +.|||||+
T Consensus 427 ~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~~-----~~~~lFfGCR~K~~Df~y~~eW~~~~~~~~----~~AFSRDq 497 (574)
T KOG1159|consen 427 FPSDLNKPLIMVGPGTGVAPFRALIQERIYQGD-----KENVLFFGCRNKDKDFLYEDEWTELNKRAF----HTAFSRDQ 497 (574)
T ss_pred cCCCCCCCeEEEcCCCCcccHHHHHHHHHhhcc-----CCceEEEecccCCccccccchhhhhhcchh----hhhccccc
Confidence 999889999999999999999999999987542 456999999999999999999998887654 45999999
Q ss_pred CCcccchhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEeeC
Q 008757 478 PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 478 ~~~~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
++|.||||+|++.++.+|+++ +.+|.|||||++..|..+|.++|.+|+.+.+|.+.|.|. |++.|++++||+.|+|
T Consensus 498 e~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 498 EQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred ccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 999999999999999999998 589999999999999999999999999999999877777 9999999999999999
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=9.3e-100 Score=815.92 Aligned_cols=543 Identities=46% Similarity=0.791 Sum_probs=461.9
Q ss_pred eEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccCC
Q 008757 2 KIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD 81 (554)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~~ 81 (554)
.++|+.+|||+|+||+|++.|++||..... .....++|+|||+|++.|++||++|+.+|++|+++||+|+...|.||++
T Consensus 95 l~~~~~at~g~gd~~dn~~~f~~~l~~~~~-~~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~ 173 (645)
T KOG1158|consen 95 LLVVVLATYGEGDPPDNAEAFYQSLTELKV-LPSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDD 173 (645)
T ss_pred eeeeeeehhcCCCCCccHHHHHHHHhhccC-chhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhcccccccc
Confidence 578999999999999999999999985432 2244589999999999999999999999999999999999999999999
Q ss_pred CCcHhhHHHHHHHHhHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccccC--CCCCCcccCCCCCeeEEE
Q 008757 82 QCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWG--NANGHAVYDAQHPCRSNV 159 (554)
Q Consensus 82 ~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v 159 (554)
.+.+++|..|++.+|+++.+.+..+... ..+.......++................. ......+.+..+|+.+.+
T Consensus 174 ~~~e~~f~~w~~~~~~~~~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (645)
T KOG1158|consen 174 AGLEEDFRTWKKPLLPELCETFSLEEDE---ATKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALV 250 (645)
T ss_pred ccchhHHHHHHHHHhHhhhheeeecccc---ccCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhh
Confidence 9999999999999999999987644221 00100000111110000000000000000 011113345677888899
Q ss_pred EeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCCC
Q 008757 160 AVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPP 239 (554)
Q Consensus 160 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
+.++.|..+.+.+.++|++++..+.+++|+||||++|+|.|+++.|+.++++|+++++..+.++......+....+..+.
T Consensus 251 ~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (645)
T KOG1158|consen 251 VVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPH 330 (645)
T ss_pred hHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCC
Confidence 99999998889999999999998889999999999999999999999999999999877666654433211112345677
Q ss_pred CCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCCh
Q 008757 240 TFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPL 318 (554)
Q Consensus 240 ~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp~~~~p~ 318 (554)
|++ |+|++++|+||+||+++|++++++.||.||+|+.||++|+.|+|++|..+|..++....++++|||.+||++++|+
T Consensus 331 p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~ 410 (645)
T KOG1158|consen 331 PFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPL 410 (645)
T ss_pred CCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCH
Confidence 888 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCC-CcccCccchhhhccCCCCcCCCCceeeEEEecCCCC
Q 008757 319 GVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 397 (554)
Q Consensus 319 ~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~ 397 (554)
.++++.+ |.++||+|||||||..+++++++++.++.+.+++| +.+.|+||+||+++.+++... .++.++.+.|+
T Consensus 411 ~~ll~~l-p~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~fr 485 (645)
T KOG1158|consen 411 PHLLELL-PRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFR 485 (645)
T ss_pred HHHHHhC-ccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccC----cceeeccccee
Confidence 9999775 99999999999999999999999999998888875 778899999999998876541 13666788999
Q ss_pred CCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcC--CCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEcc
Q 008757 398 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA--ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 475 (554)
Q Consensus 398 lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~--~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr 475 (554)
||.|+.+||||||+||||||||||+|+|...++.+. ..+ +|||||||+.+.||||++||+++.+.+.++++..||||
T Consensus 486 lp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SR 564 (645)
T KOG1158|consen 486 LPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSR 564 (645)
T ss_pred cCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeec
Confidence 999999999999999999999999999998766542 234 89999999999999999999999999999999999999
Q ss_pred CC-CCcccchhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEee
Q 008757 476 EG-PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 553 (554)
Q Consensus 476 ~~-~~~~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 553 (554)
++ +.|.||||+|++++++||++| .++|+|||||++.+|+++|.++|.+|+++.++++.++|.+++++|++++||++||
T Consensus 565 eq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DV 644 (645)
T KOG1158|consen 565 EQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDV 644 (645)
T ss_pred cCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhcccccccc
Confidence 98 889999999999999999999 5699999999977799999999999999999999999999999999999999999
Q ss_pred C
Q 008757 554 W 554 (554)
Q Consensus 554 w 554 (554)
|
T Consensus 645 w 645 (645)
T KOG1158|consen 645 W 645 (645)
T ss_pred C
Confidence 9
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=1.9e-97 Score=813.73 Aligned_cols=490 Identities=30% Similarity=0.522 Sum_probs=420.8
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
+.+|||+||||+|+||+||+.||+||.... ...|++++|||||||||+|++||+++|++|++|+++||+|+++++.+|.
T Consensus 110 ~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~-~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~ 188 (600)
T PRK10953 110 KLLIVVTSTQGEGEPPEEAVALHKFLFSKK-APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADV 188 (600)
T ss_pred CeEEEEECCCCCCCCChhHHHHHHHHhhCc-CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeeccccccc
Confidence 368999999999999999999999997543 2349999999999999999999999999999999999999999986654
Q ss_pred CCCcHhhHHHHHHHHhHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeEEEE
Q 008757 81 DQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVA 160 (554)
Q Consensus 81 ~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (554)
+++++|++|++.+|++|...+..... ..... . ..... . .....++..+|+.++|+
T Consensus 189 --~~e~~~~~W~~~~~~~l~~~~~~~~~----~~~~~-----~----~~~~~----~------~~~~~~~~~~p~~a~v~ 243 (600)
T PRK10953 189 --EYQAAASEWRARVVDALKSRAPAVAA----PSQSV-----A----TGAVN----E------IHTSPYSKEAPLTASLS 243 (600)
T ss_pred --ccHHHHHHHHHHHHHHHHhhcCCccc----ccccc-----c----ccccc----c------cccCCCCCCCCeEEEEE
Confidence 58899999999999999876532110 00000 0 00000 0 00113456789999999
Q ss_pred eeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCCCC
Q 008757 161 VRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 240 (554)
Q Consensus 161 ~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
.|++||.++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+.+..
T Consensus 244 ~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~---------------- 307 (600)
T PRK10953 244 VNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG---------------- 307 (600)
T ss_pred EEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC----------------
Confidence 9999999999999999999998889999999999999999999999999999999998876641
Q ss_pred CCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHH
Q 008757 241 FPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGV 320 (554)
Q Consensus 241 ~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp~~~~p~~~ 320 (554)
.++|++++|++|+||+.+ ++.+|+.++.++.++. |+++.. +++.+.+|.. +++++|||++|| +++++++
T Consensus 308 -~~~tl~~~l~~~~dl~~~-~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q 376 (600)
T PRK10953 308 -KTLPLAEALQWHFELTVN-TANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP-AQLDAEQ 376 (600)
T ss_pred -CCCCHHHHHHHhcccCCC-cHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC-CCCCHHH
Confidence 146899999999999875 7789999999998754 333432 5566777764 689999999998 6899999
Q ss_pred HHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEec-CCCCCC
Q 008757 321 FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLP 399 (554)
Q Consensus 321 ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~-~~F~lp 399 (554)
|++.+ |+++||+|||||+|...+++++|+|+++.+. ..|+.+.|+||+||.+....|+ .++|+++. +.|++|
T Consensus 377 ~l~ll-~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~-~~g~~~~G~~S~~L~~~l~~Gd-----~v~v~~~~~~~F~lp 449 (600)
T PRK10953 377 LIGLL-RPLTPRLYSIASSQAEVENEVHITVGVVRYD-IEGRARAGGASSFLADRLEEEG-----EVRVFIEHNDNFRLP 449 (600)
T ss_pred HHHhC-CCCCCeeeecccCCCCCCCeEEEEEEEEEee-cCCCCcCceEhhhhhhcCCCCC-----EEEEEeccCCcccCC
Confidence 99765 9999999999999987789999999988665 3578889999999997444333 47888875 589999
Q ss_pred CCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCC
Q 008757 400 ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT 479 (554)
Q Consensus 400 ~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~ 479 (554)
.++.+|+||||+||||||||||++++..... .+++|||||||+...|++|++||++|.+.+.+++++.+|||++.+
T Consensus 450 ~~~~~piImIg~GTGIAPfrsflq~r~~~~~----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~ 525 (600)
T PRK10953 450 ANPETPVIMIGPGTGIAPFRAFMQQRAADGA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKE 525 (600)
T ss_pred CCCCCCEEEEecCcCcHHHHHHHHHHHHcCC----CCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCC
Confidence 8888999999999999999999999876432 378999999999777999999999999999999999999999888
Q ss_pred cccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEeeC
Q 008757 480 KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 480 ~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
|+||||+|.++.+++++++.++++|||||++..|+++|.++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 526 k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 526 KIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999999999999999988999999999778999999999999999999999999999999999999999999
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=3.9e-95 Score=799.81 Aligned_cols=489 Identities=34% Similarity=0.600 Sum_probs=421.4
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
+.+||||||||+|+||+||+.||++|.... ...|++++|||||||||+|++||+++|++|++|+++||++++|++.+|.
T Consensus 107 ~~li~v~ST~GeGe~Pdna~~F~~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~ 185 (597)
T TIGR01931 107 RLLLLVISTQGEGEPPEEAISFHKFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL 185 (597)
T ss_pred ceEEEEeCCCCCCcCCHHHHHHHHHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc
Confidence 368999999999999999999999998543 2349999999999999999999999999999999999999999997765
Q ss_pred CCCcHhhHHHHHHHHhHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeEEEE
Q 008757 81 DQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVA 160 (554)
Q Consensus 81 ~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (554)
+.+++|++|.+.+|++|...+.... ..+ .+.+.... . ......++..+|+.++|+
T Consensus 186 --~~e~~~~~W~~~~~~~l~~~~~~~~-----~~~------~~~~~~~~-~-----------~~~~~~~~~~~p~~a~v~ 240 (597)
T TIGR01931 186 --DYDANAAEWRAGVLTALNEQAKGSA-----STP------SLSETPAR-S-----------QTATSVYSKQNPFRAEVL 240 (597)
T ss_pred --ChHHHHHHHHHHHHHHHHhhccCcc-----CCC------cceecccc-c-----------ccccCCccCCCCeEEEEE
Confidence 5889999999999999987653110 001 01100000 0 001123456789999999
Q ss_pred eeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCCCC
Q 008757 161 VRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 240 (554)
Q Consensus 161 ~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
.|++||.++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+++. +
T Consensus 241 ~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~----------- 304 (597)
T TIGR01931 241 ENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----G----------- 304 (597)
T ss_pred eeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----C-----------
Confidence 999999999999999999999988999999999999999999999999999999999887663 1
Q ss_pred CCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHH
Q 008757 241 FPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGV 320 (554)
Q Consensus 241 ~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp~~~~p~~~ 320 (554)
+++|++++|++|+||+. +++.+|+.||.+++|++.++.| + +++.|.+|+. +++++|||.+|| ++++++|
T Consensus 305 -~~~tl~~~l~~~~dl~~-~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq 373 (597)
T TIGR01931 305 -KTIPLFEALITHFELTQ-NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQ 373 (597)
T ss_pred -CCcCHHHHHHhceeCCC-CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHHH
Confidence 15799999999999998 5899999999999998655433 2 5677888885 789999999999 8999999
Q ss_pred HHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEec-CCCCC
Q 008757 321 FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKL 398 (554)
Q Consensus 321 ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~~-~~F~l 398 (554)
|++++ |++.||+|||||+|..++++++|+|++|.+. ..|+.+.|.||+||.+ +.+| + .++|+++. +.|++
T Consensus 374 ~v~ll-~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~-~~~~~~~G~~S~~L~~~l~~G-d-----~v~v~~~~~~~F~l 445 (597)
T TIGR01931 374 LISLL-RPLTPRLYSISSSQSEVGDEVHLTVGVVRYQ-AHGRARLGGASGFLAERLKEG-D-----TVPVYIEPNDNFRL 445 (597)
T ss_pred HHHhC-cccCCceeeeccCcccCCCEEEEEEEEEEec-CCCCccccchhHHHHhhCCCC-C-----EEEEEEeeCCcccC
Confidence 99765 8899999999999987788999999988654 4678889999999998 5443 3 47788764 57999
Q ss_pred CCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCC
Q 008757 399 PADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP 478 (554)
Q Consensus 399 p~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~ 478 (554)
|.++.+|+||||+||||||||||++++...+. .++++||||||+...|++|++||++|.+.+.+++++.+|||++.
T Consensus 446 p~~~~~piImIg~GTGIAPfrsflq~r~~~~~----~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~ 521 (597)
T TIGR01931 446 PEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA----KGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQA 521 (597)
T ss_pred CCCCCCCEEEEcCCcCchhHHHHHHHHHHccC----CCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCC
Confidence 98888999999999999999999999876432 37899999999965699999999999999998889999999877
Q ss_pred CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEeeC
Q 008757 479 TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 479 ~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
.++||||+|.++.+.+++++.++++|||||+++.|+++|.++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 522 ~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 522 EKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8999999999999999998878899999995489999999999999999999999999999999999999999999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-94 Score=778.83 Aligned_cols=490 Identities=37% Similarity=0.648 Sum_probs=437.0
Q ss_pred eEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccCC
Q 008757 2 KIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD 81 (554)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~~ 81 (554)
+++||+||+|+|++|+||..||++|... +...|.+++||||||||++|+.||.+++.++++|+.+||+++.+++++|..
T Consensus 97 ~~~~i~st~geGe~p~na~~f~~~l~~~-~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~ 175 (587)
T COG0369 97 LLLFVVSTQGEGEPPDNAVAFHEFLKGK-KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ 175 (587)
T ss_pred ceEEEEccccCCCCCCchHHHHHHhccc-ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc
Confidence 6899999999999999999999999854 244599999999999999999999999999999999999999999999886
Q ss_pred CCcHhhHHHHHHHHhHHHHhhhCCCCCCCCcCCCccccccceEEEEecCCCccccccccCCCCCCcccCCCCCeeEEEEe
Q 008757 82 QCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAV 161 (554)
Q Consensus 82 ~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (554)
+++....+|...+++.+...+...... ...++. +. .. ...+....++.+.+..
T Consensus 176 -~~e~~~~~w~~~~~~~l~~~~~~~~~~--~~~~~~-----~~------------------~~-~~~~~~~~~~~a~~~~ 228 (587)
T COG0369 176 -DFEAAAAPWRDDVLELLKSKFPGQEAA--PAQVAT-----SP------------------QS-ESPYSKPAPSVAILLE 228 (587)
T ss_pred -ccchhhhHHHHHHHHHHHhhccccccc--cccccc-----hh------------------cc-cccccccCcceeEeec
Confidence 788999999999999998876432110 000000 00 00 1122334567899999
Q ss_pred eeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCCCCC
Q 008757 162 RKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTF 241 (554)
Q Consensus 162 ~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|++++..++.++++||+|++++.+++|+|||+++|||+|+++.|+++|..+||+++..++++ .
T Consensus 229 n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----------------~ 291 (587)
T COG0369 229 NRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----------------G 291 (587)
T ss_pred cccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------C
Confidence 99999999999999999999988999999999999999999999999999999998766331 1
Q ss_pred CcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHH
Q 008757 242 PPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVF 321 (554)
Q Consensus 242 p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp~~~~p~~~l 321 (554)
.++++.++|++|+|+++.| ++++..|+.|+.+++.++.|+.++ ...++.|.. +++++|+|++||++++|+++|
T Consensus 292 ~~~~~~~~l~~~~e~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~l 364 (587)
T COG0369 292 ETLPLVEALKSHFEFTSAP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEEL 364 (587)
T ss_pred CcchHHHHHHHheecccch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHH
Confidence 1689999999999999999 999999999999999999999886 566777765 899999999999999999999
Q ss_pred HHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecC-CCCCCC
Q 008757 322 FAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPA 400 (554)
Q Consensus 322 l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~-~F~lp~ 400 (554)
++.+ |+++||.|||||+|..+++++||||++|.+... ++.+.|+||+||+++...++ .++|+++.+ +|++|.
T Consensus 365 i~~l-~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~-----~i~v~v~~n~nf~lp~ 437 (587)
T COG0369 365 IDLL-PPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGD-----TIPVFVQPNKNFRLPE 437 (587)
T ss_pred HHhC-ccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCC-----eEEEEeccCCccccCC
Confidence 9765 999999999999999999999999999988776 45889999999999988444 488999876 899999
Q ss_pred CCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCCc
Q 008757 401 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTK 480 (554)
Q Consensus 401 ~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~~ 480 (554)
++.+||||||+||||||||||+|+|...+.. +++|||||||+.+.||||++||++|.+.|.++++..||||++++|
T Consensus 438 ~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~----gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~K 513 (587)
T COG0369 438 DPETPIIMIGPGTGIAPFRAFVQERAANGAE----GKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEK 513 (587)
T ss_pred CCCCceEEEcCCCCchhHHHHHHHHHhcccc----CceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCC
Confidence 9999999999999999999999999876533 689999999998889999999999999999999999999999999
Q ss_pred ccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEeeC
Q 008757 481 EYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 481 ~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
.||||+|++++++||++++++|+|||||++..|+++|.++|.+|+.+.++++.|+|.+++++|++++||++|||
T Consensus 514 iYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 514 IYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred ccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 99999999999999999999999999997799999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=2.1e-79 Score=650.00 Aligned_cols=394 Identities=53% Similarity=0.936 Sum_probs=354.1
Q ss_pred CCCeeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCC-CCcEEEEeeCCCCCC
Q 008757 152 QHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDGT 230 (554)
Q Consensus 152 ~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~-~~~~~~~~~~~~~~~ 230 (554)
.+|+.++|+.+++||++ ++++++||+||+++.+++|+|||+|+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 3 ~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~--- 78 (416)
T cd06204 3 KNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE--- 78 (416)
T ss_pred CCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc---
Confidence 46889999999999998 9999999999998779999999999999999999999999999999 899888864321
Q ss_pred CCCCCCCCCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 008757 231 PLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 309 (554)
Q Consensus 231 ~~~~~~~~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~ 309 (554)
....+.|+| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|++|++ +|.+.|.+|+.+.+++++|+|.
T Consensus 79 ---~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 79 ---PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ---ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 123345788 99999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCC---CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCc------
Q 008757 310 EFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK------ 380 (554)
Q Consensus 310 ~fp~~~---~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~------ 380 (554)
+||+++ +|++.|++.+ |+++||+|||||+|..++++++|||+++.+.++.++.+.|+||+||+++.++..
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999875 999999999999998788999999999988888888999999999999875110
Q ss_pred ---------CCCCceeeEEEecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCC
Q 008757 381 ---------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 451 (554)
Q Consensus 381 ---------~~~~~~~~v~~~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ 451 (554)
...+..++++++.|.|.+|.+..+|+||||+|||||||+||++++....+.+...++++||||||+++.|+
T Consensus 234 ~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 00234588899999999998878999999999999999999999875433333357999999999985599
Q ss_pred CcHHHHHHHHHcCCcCeEEEEEccCCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCC
Q 008757 452 IYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 531 (554)
Q Consensus 452 ly~del~~~~~~~~~~~l~~a~Sr~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~ 531 (554)
+|++||++|.+.+.+.+++.+|||++..++|||++|.++.+.+++++.+++.||||||+..|+++|.++|.+|+++++++
T Consensus 314 ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~ 393 (416)
T cd06204 314 IYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGM 393 (416)
T ss_pred chHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCCC
Confidence 99999999999888778999999988779999999998888888888778999999994349999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCeeEeeC
Q 008757 532 DSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 532 ~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
+.++|++|+++|+++|||++|||
T Consensus 394 ~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 394 TETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CHHHHHHHHHHHHHcCCeeEecC
Confidence 99999999999999999999999
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=8.8e-78 Score=634.66 Aligned_cols=381 Identities=39% Similarity=0.710 Sum_probs=340.5
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCC--CCcEEEEeeCCCCCCCCCCCC
Q 008757 159 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 236 (554)
Q Consensus 159 v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~~ 236 (554)
|+.+++||++++.++++||+|++++++++|+|||+|+|+|+|+++.|++++++||++ +++.+.++....... .+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 577999999999999999999998888999999999999999999999999999999 888888864221111 1234
Q ss_pred CCCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCC
Q 008757 237 LPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAK 315 (554)
Q Consensus 237 ~~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp~~~ 315 (554)
+|.++| |+|++++|++||||+++|+++||+.||.||+|+++|++|++|++.+|++.|.+|+.+.++|++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 677888 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccC-----CCCcCCCCceeeEE
Q 008757 316 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 390 (554)
Q Consensus 316 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~-----~~~~~~~~~~~~v~ 390 (554)
+|++.+++.+ |+++||+|||||+|..+++.++|+|+++...+ .|+||+||+++. +|+ .+.+.
T Consensus 160 ~pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 9999999875 99999999999999866789999999875422 599999999987 433 46777
Q ss_pred Ee-cCCCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHh--hcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCc
Q 008757 391 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 466 (554)
Q Consensus 391 ~~-~~~F~lp~~-~~~piimIa~GtGIAPf~s~l~~~~~~~~--~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~ 466 (554)
++ .|.|.+|.+ ..+|+||||+||||||||||++++..... .+...++++||||||+++.|++|++||++|.+.+.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 75 567999876 67899999999999999999999876421 123357999999999985599999999999999998
Q ss_pred CeEEEEEccCCC---CcccchhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008757 467 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 542 (554)
Q Consensus 467 ~~l~~a~Sr~~~---~~~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 542 (554)
++++++|||++. .++||||+|.++.+.+++++ ..++.||||||++.|+++|+++|.+|+.+++|++.++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 889999999876 58999999999999999887 57899999999778999999999999999999999999999999
Q ss_pred HHHCCCeeEeeC
Q 008757 543 LQMTGRYLRDVW 554 (554)
Q Consensus 543 l~~~~Ry~~dvw 554 (554)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
No 8
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=2.3e-77 Score=629.52 Aligned_cols=378 Identities=43% Similarity=0.784 Sum_probs=343.8
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 008757 159 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 238 (554)
Q Consensus 159 v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
|+.|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+++.... +.+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~-------~~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNE-------QQRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccc-------ccccC
Confidence 56789999999999999999999878999999999999999999999999999999999998886422 12335
Q ss_pred CCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 008757 239 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 317 (554)
Q Consensus 239 ~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp~~~~p 317 (554)
.++| |+|++++|++||||+++|++.+|+.||.||+|+++|++|.+|++.++.+.|.+| ++++++|+|.+||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 5778 999999999999999999999999999999999999999999999999999988 789999999999999999
Q ss_pred hHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCC
Q 008757 318 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 397 (554)
Q Consensus 318 ~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~ 397 (554)
++.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++.+|+ .+.+.++.|.|+
T Consensus 152 ~~~ll~~l-p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLELC-PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHhC-cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 99999875 99999999999999866789999999998877778888999999999876643 478888999999
Q ss_pred CCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCC
Q 008757 398 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 477 (554)
Q Consensus 398 lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~ 477 (554)
+|.+..+|+||||+||||||||||++++....+.+...++++||||||+++.|++|++||++|.+.+.+.+++++|||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99887899999999999999999999987653333445899999999998559999999999999998889999999998
Q ss_pred CCcccchhhhcccHHHHHHHHhCC-CEEEEecCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEeeC
Q 008757 478 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 478 ~~~~yVqd~l~~~~~~v~~~l~~~-~~iyvCG~~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
..++|||+++.++.+.+++++.++ +.|||||| +. |+++|.++|.+++.++++++.++|++|+++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999888898887555 49999999 55 999999999999999999999999999999999999999999
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=5.8e-77 Score=629.50 Aligned_cols=386 Identities=41% Similarity=0.737 Sum_probs=337.4
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecCCHHHHHHHHHHcCCC--CCcEEEEeeCCCCCCCCC--
Q 008757 159 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLG-- 233 (554)
Q Consensus 159 v~~~~~l~~~~~~~~~~~i~~~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~-- 233 (554)
|+.+++|+.+++.|+++||+||+++ ++++|+|||+|+|+|+|+++.|+++|++|++. .++.+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 5678999999999999999999986 68999999999999999999999999999984 577777764322111100
Q ss_pred CCCCCCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC
Q 008757 234 KSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 312 (554)
Q Consensus 234 ~~~~~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp 312 (554)
....++++| |+|++++|++||||+++|++.+|+.||.||+|+.+|++|++|++ +++.|.+|+..++++++|+|.+||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 011223444 89999999999999999999999999999999999999999997 888999999999999999999999
Q ss_pred CCCCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCC--CCcccCccchhhhccCCCCcCCCCceeeEE
Q 008757 313 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 390 (554)
Q Consensus 313 ~~~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~--g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~ 390 (554)
++++|++.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++.+|+ .+.++
T Consensus 160 s~~~~~~~ll~~l-p~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQL-PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCF 232 (406)
T ss_pred cCCCCHHHHHHhC-cccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEE
Confidence 9999999999875 9999999999999987789999999998666543 4467899999999887654 36777
Q ss_pred Ee-cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHh----hcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCC
Q 008757 391 VR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE----AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 465 (554)
Q Consensus 391 ~~-~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~----~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~ 465 (554)
++ ++.|++|.+..+|+||||+||||||||||++++....+ .+...++++||||||+++.|++|++||++|.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 76 45799998888999999999999999999999865321 12335899999999999559999999999999999
Q ss_pred cCeEEEEEccCCC-CcccchhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008757 466 LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 543 (554)
Q Consensus 466 ~~~l~~a~Sr~~~-~~~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 543 (554)
+++++++|||++. .++|||++|.++.+.+++++ .+++.|||||| +.|+++|.++|.+|++++++++.++|++|+++|
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l 391 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKL 391 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8889999999864 58999999999999999987 67999999999 689999999999999999999999999999999
Q ss_pred HHCCCeeEeeC
Q 008757 544 QMTGRYLRDVW 554 (554)
Q Consensus 544 ~~~~Ry~~dvw 554 (554)
+++|||++|||
T Consensus 392 ~~~gRy~~dvw 402 (406)
T cd06202 392 RDENRYHEDIF 402 (406)
T ss_pred HHcCCeEEEec
Confidence 99999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=3.4e-74 Score=605.86 Aligned_cols=375 Identities=36% Similarity=0.620 Sum_probs=331.7
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCC
Q 008757 158 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 237 (554)
Q Consensus 158 ~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
+|+.|++||+++++++++||+|++++ +++|+|||+|+|+|+|+++.|+++|++||+++++.++++... ...
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~--------~~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASG--------SAT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCC--------CCC
Confidence 46789999999999999999999975 899999999999999999999999999999999999887422 122
Q ss_pred CCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCC
Q 008757 238 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP 316 (554)
Q Consensus 238 ~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp~~~~ 316 (554)
+.|+| |+|++++|++|+||+++|+++||+.||.||+|+++|++|..++ ++.|.+++..++++++|+|.+||++++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~ 147 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIAL 147 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCC
Confidence 34566 8999999999999999999999999999999999999999885 467999999999999999999999999
Q ss_pred ChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCC-CcccCccchhhhccCCCCcCCCCceeeEEE--ec
Q 008757 317 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFV--RQ 393 (554)
Q Consensus 317 p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~--~~ 393 (554)
|+++|++.+ |+++||+|||||+|..+++.++|+|+++...++.+ +.+.|+||+||+++.+|+ .+.+.+ +.
T Consensus 148 ~~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~ 220 (384)
T cd06206 148 PLATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSH 220 (384)
T ss_pred CHHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCC
Confidence 999999875 99999999999999766789999999886665544 567899999999876654 255554 35
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 394 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 394 ~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||++|++.+.+ +++++|
T Consensus 221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~ 299 (384)
T cd06206 221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAY 299 (384)
T ss_pred CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEe
Confidence 7899988778999999999999999999999876533333357899999999995599999999999987665 899999
Q ss_pred ccCCCC-cccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCC
Q 008757 474 SREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGR 548 (554)
Q Consensus 474 Sr~~~~-~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~R 548 (554)
||++.. ++|||++|.++.+.+++++.+++.|||||| ++|+++|.++|.+++.+++ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998654 899999999888888887778899999999 6799999999999999999 9999999999999999999
Q ss_pred eeEeeC
Q 008757 549 YLRDVW 554 (554)
Q Consensus 549 y~~dvw 554 (554)
|++|||
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=9.4e-72 Score=581.69 Aligned_cols=356 Identities=40% Similarity=0.670 Sum_probs=315.2
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCCCC
Q 008757 158 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 237 (554)
Q Consensus 158 ~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
+|+.|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+.+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 36789999999999999999999988899999999999999999999999999999999887642
Q ss_pred CCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC--CC
Q 008757 238 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP--SA 314 (554)
Q Consensus 238 ~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l~~fp--~~ 314 (554)
+.| ++|++++|++|+||+++ .++.|+.||+++.++++|+. +|++.|.+ +++++|+|++|| ++
T Consensus 66 --~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~ 130 (360)
T cd06199 66 --VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPA 130 (360)
T ss_pred --CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCC
Confidence 123 78999999999999987 55568899999988888775 57777764 479999999999 99
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEec-
Q 008757 315 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ- 393 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~- 393 (554)
++|++||++.+ |+++||+|||||+|..++++++|+|+++.+.+. ++.+.|+||+||+++.+.|+ .+.+++++
T Consensus 131 ~~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~ 203 (360)
T cd06199 131 RLTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD-----TVPVFVQPN 203 (360)
T ss_pred CCCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC-----EEEEEEecC
Confidence 99999999765 899999999999998777899999998866553 46678999999999764333 46787765
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 394 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 394 ~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
+.|++|.+..+|+||||+||||||||||++++.... ..++++||||||++..|++|++||++|.+.+.+++++.+|
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~----~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG----AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc----CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 579999887899999999999999999999987542 2378999999999856999999999999988888899999
Q ss_pred ccCCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEee
Q 008757 474 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 553 (554)
Q Consensus 474 Sr~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 553 (554)
||++..++|||++|.++.+.+++++.+++.||||||+..|+++|+++|.+|++++++++.++|++|+++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99988889999999999889988887789999999944899999999999999999999999999999999999999999
Q ss_pred C
Q 008757 554 W 554 (554)
Q Consensus 554 w 554 (554)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=7.6e-71 Score=591.76 Aligned_cols=368 Identities=38% Similarity=0.655 Sum_probs=321.2
Q ss_pred ccCCCCCeeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCC
Q 008757 148 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 227 (554)
Q Consensus 148 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 227 (554)
.++..+|+.++|+.|++||+++++++++||+||+++.+++|+|||+|+|+|+|+++.|+++|++||++++..+
T Consensus 162 ~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~------- 234 (530)
T PRK06214 162 GTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI------- 234 (530)
T ss_pred ccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-------
Confidence 3566789999999999999999999999999999988999999999999999999999999999999887532
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 008757 228 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 307 (554)
Q Consensus 228 ~~~~~~~~~~~~~~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~ 307 (554)
.++|++++|++|+||+++| +.+|+.|+.++++++ |++|+.|++.+..+... ...+++|+
T Consensus 235 --------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~vldv 293 (530)
T PRK06214 235 --------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDVLAA 293 (530)
T ss_pred --------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcHHHH
Confidence 1579999999999999876 789999999998766 77888887533322211 24689999
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCcee
Q 008757 308 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 387 (554)
Q Consensus 308 l~~fp~~~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~ 387 (554)
|++||++++|++++++.+ |+++||+|||||+|..++++++|+|+++.+.+ .++.+.|+||+||++..+.|+ .+
T Consensus 294 L~~fp~~~~~~~~lle~l-p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd-----~V 366 (530)
T PRK06214 294 LEKFPGIRPDPEAFVEAL-DPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGT-----RV 366 (530)
T ss_pred HHhCCCCCCCHHHHHhhc-CCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCC-----EE
Confidence 999999999999999865 99999999999999877889999999886653 467788999999985444333 36
Q ss_pred eEEEec-CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCc
Q 008757 388 PIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 466 (554)
Q Consensus 388 ~v~~~~-~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~ 466 (554)
.+++++ ++|++|.+..+|+||||+||||||||||++++..... .++++||||||+...|++|++||++|.+.+.+
T Consensus 367 ~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l 442 (530)
T PRK06214 367 RVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKAAGVL 442 (530)
T ss_pred EEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHHhCCc
Confidence 777753 3499998778899999999999999999999875432 37899999998876699999999999999988
Q ss_pred CeEEEEEccCCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 008757 467 SQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMT 546 (554)
Q Consensus 467 ~~l~~a~Sr~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~ 546 (554)
++++++|||++..++|||++|.++.+++++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++
T Consensus 443 ~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~ 522 (530)
T PRK06214 443 TRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKA 522 (530)
T ss_pred eEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 88999999998889999999999988999988788999999996678999999999999999999999999999999999
Q ss_pred CCeeEeeC
Q 008757 547 GRYLRDVW 554 (554)
Q Consensus 547 ~Ry~~dvw 554 (554)
|||++|||
T Consensus 523 gRY~~Dvw 530 (530)
T PRK06214 523 GRYQADVY 530 (530)
T ss_pred CCEEEecC
Confidence 99999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=2.9e-47 Score=370.90 Aligned_cols=216 Identities=45% Similarity=0.820 Sum_probs=183.7
Q ss_pred cCCCCCeeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCC
Q 008757 149 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 228 (554)
Q Consensus 149 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 228 (554)
++.++|+.++|+.+++|++++++++++||+|++++.++.|+|||+|+|+|+|+++.|++++++||+++|+.|.++.....
T Consensus 3 ~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~ 82 (219)
T PF00667_consen 3 YSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQN 82 (219)
T ss_dssp HBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESSTT
T ss_pred cCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEecccc
Confidence 45678999999999999999999999999999998899999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCC-cchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 008757 229 GTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 307 (554)
Q Consensus 229 ~~~~~~~~~~~~~p-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~ 307 (554)
.....++| |+|++++|++|+||+++|++.||+.||.|++|+++|++|++|++.+|++.|.+|+.+.+++++|+
T Consensus 83 ------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~di 156 (219)
T PF00667_consen 83 ------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDI 156 (219)
T ss_dssp ------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHH
T ss_pred ------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHH
Confidence 23456778 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchh
Q 008757 308 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 371 (554)
Q Consensus 308 l~~fp~~~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~ 371 (554)
|.+||++++|++.||+.+ |+++||+|||||||..++++++|||++|.+.++.|+.+.|+||+|
T Consensus 157 l~~fps~~~pl~~ll~~l-p~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 157 LEDFPSCKPPLEELLELL-PPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHSTTBTC-HHHHHHHS--B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HhhCcccCCCHHHhhhhC-CCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999875 999999999999999999999999999999889999999999997
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=5.7e-39 Score=332.02 Aligned_cols=272 Identities=24% Similarity=0.446 Sum_probs=221.4
Q ss_pred cCCCCCeeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCCC
Q 008757 149 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 228 (554)
Q Consensus 149 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 228 (554)
|...+|+.++|+.|.+++.++...+++||+|+.+ ..+.|+||.+++|.|+...
T Consensus 85 ~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~g~~-------------------------- 137 (367)
T PLN03115 85 FRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPDGID-------------------------- 137 (367)
T ss_pred eccCCCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcCCcC--------------------------
Confidence 5677899999999999999888899999999865 4789999999998654100
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 008757 229 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 308 (554)
Q Consensus 229 ~~~~~~~~~~~~~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~l 308 (554)
.. |
T Consensus 138 ---------------------------~~-------------------------------g------------------- 140 (367)
T PLN03115 138 ---------------------------KN-------------------------------G------------------- 140 (367)
T ss_pred ---------------------------CC-------------------------------C-------------------
Confidence 00 0
Q ss_pred hhCCCCCCChHHHHHHhcCCCCCcccccCCCCCC---CCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCc
Q 008757 309 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 385 (554)
Q Consensus 309 ~~fp~~~~p~~~ll~~~~p~~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~ 385 (554)
.+..+|+|||||+|.. .++.++|+|+.+.+.+..|....|.||+||+++.+|+
T Consensus 141 ------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd------ 196 (367)
T PLN03115 141 ------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA------ 196 (367)
T ss_pred ------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcC------
Confidence 1245699999999853 2468999998876665667777899999999977754
Q ss_pred eeeEEEecCCCC-CCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEcccCCCCCCCcHHHHHHHHHc
Q 008757 386 WAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQS 463 (554)
Q Consensus 386 ~~~v~~~~~~F~-lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~del~~~~~~ 463 (554)
.+.+.+|.|.|. +|.+..+|+||||+|||||||+||++++....... ...++++||||||+.+ |++|.+||++|.+.
T Consensus 197 ~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~~ 275 (367)
T PLN03115 197 EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEK 275 (367)
T ss_pred EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHHh
Confidence 367777877654 56566789999999999999999999875432211 1136899999999987 99999999999887
Q ss_pred CC-cCeEEEEEccCCC----CcccchhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHH
Q 008757 464 GA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAE 537 (554)
Q Consensus 464 ~~-~~~l~~a~Sr~~~----~~~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~ 537 (554)
.. .++++.++||++. .++|||++|.++.+.+++++ ..+++|||||| ++|+++|.++|.++....+ + +++
T Consensus 276 ~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~~ 350 (367)
T PLN03115 276 APENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DWF 350 (367)
T ss_pred CCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cHH
Confidence 53 5689999999754 57999999999888888877 35789999999 8999999999999998874 3 578
Q ss_pred HHHHHHHHCCCeeEeeC
Q 008757 538 SMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 538 ~~~~~l~~~~Ry~~dvw 554 (554)
+++++|+++|||+.|||
T Consensus 351 ~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 351 EYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHCCCeEEecC
Confidence 99999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=7.6e-38 Score=313.68 Aligned_cols=218 Identities=49% Similarity=0.908 Sum_probs=185.5
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecC-CCCCCCCCCCCeEE
Q 008757 330 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIM 408 (554)
Q Consensus 330 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~-~F~lp~~~~~piim 408 (554)
.+|+|||||+|....+.++|+|+.+....+.+..+.|.+|.||+++.+|+ .+.+.++.| .|.++.+..+|+||
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~G~~f~l~~~~~~~~vl 120 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRPAPSFRLPKDPTTPIIM 120 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEecCCcccCCCCCCCCEEE
Confidence 35899999999754678999998876555555667799999999876654 367888878 89998776789999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCC-cccchhhh
Q 008757 409 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKM 487 (554)
Q Consensus 409 Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~-~~yVqd~l 487 (554)
||+|||||||+||++++.....++...++++||||+|+.+.|++|.++|++|.+.+...+++.++||+... ++||++.+
T Consensus 121 IAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~l 200 (267)
T cd06182 121 VGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKL 200 (267)
T ss_pred EecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCCCCCceehHHHH
Confidence 99999999999999998764212223478999999999933999999999999987777899999997653 78999999
Q ss_pred cccHHHHHHHHhCCCEEEEecCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEeeC
Q 008757 488 MEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 488 ~~~~~~v~~~l~~~~~iyvCG~~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
.+..+.+.+.+.+++.|||||| +. |++.|.++|.+++.++++++.++|+.++++|++.|||++|+|
T Consensus 201 ~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 201 KEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred HHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 8777777776666779999999 78 999999999999999999999999999999999999999999
No 16
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=2.3e-33 Score=284.61 Aligned_cols=189 Identities=34% Similarity=0.679 Sum_probs=156.4
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEE-ecCCCCCCCCCCCCeEEE
Q 008757 331 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMI 409 (554)
Q Consensus 331 pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~-~~~~F~lp~~~~~piimI 409 (554)
+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.+.+ +.+.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd------~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPGD------TIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCcC------EEEEEeccCCCccCC-CCCCCEEEE
Confidence 59999999984 46788877643 3499999999876654 355655 46789876 446899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCCcccchhhhcc
Q 008757 410 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 489 (554)
Q Consensus 410 a~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~~~yVqd~l~~ 489 (554)
|+|||||||+||+++... .++++||||+|+++.|.+|++||++|.+.+.+.+++.++||+. .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 999999999999997521 2689999999998558999999999998887778889999975 48999999887
Q ss_pred cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEeeC
Q 008757 490 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 490 ~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
..+.+..++.+++.||+||| ++|+++|.+.|.+|+.+++ + -+.+++++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 77667666667899999999 8999999999999998654 2 3888999999999998
No 17
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=2.7e-34 Score=284.91 Aligned_cols=212 Identities=33% Similarity=0.535 Sum_probs=172.2
Q ss_pred CCChHHHHHHhcC-CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEe-
Q 008757 315 KPPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR- 392 (554)
Q Consensus 315 ~~p~~~ll~~~~p-~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~- 392 (554)
..-+|||+...++ ...+|+|||||+|. .+.++|+|+.+.. +.+ +.|.+|+||++....++ .+.+..+
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~--~~~--~~G~~S~~L~~~~~~Gd-----~v~i~gp~ 99 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRH--ADG--GLGLGSGWLTRHAPIGA-----SVALRLRE 99 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEecc--CCC--CCeeechhhhhCCCCCC-----EEEEEecC
Confidence 3457898865433 25789999999985 4788888876522 112 34999999998754333 3677776
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
++.|.++. ..+|+||||+|||||||+||++++.... .++++||||+|+.+.|++|.+||++|.+.+.+++++.+
T Consensus 100 gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~ 173 (245)
T cd06200 100 NPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLA 173 (245)
T ss_pred CCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEEE
Confidence 45788875 5689999999999999999999986532 25799999999985589999999999998888889999
Q ss_pred EccCCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCc-chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeE
Q 008757 473 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLR 551 (554)
Q Consensus 473 ~Sr~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~-~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 551 (554)
+||++..++||++.+.++.+.+.+++..++.||+||| + +|+++|.+.|.+++++ +.+++|+++|||.+
T Consensus 174 ~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~~ 242 (245)
T cd06200 174 FSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRYRR 242 (245)
T ss_pred EccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeEE
Confidence 9998777899999998887777766666789999999 7 9999999999999975 34889999999999
Q ss_pred eeC
Q 008757 552 DVW 554 (554)
Q Consensus 552 dvw 554 (554)
|+|
T Consensus 243 d~~ 245 (245)
T cd06200 243 DVY 245 (245)
T ss_pred ecC
Confidence 999
No 18
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=4.5e-33 Score=294.59 Aligned_cols=270 Identities=23% Similarity=0.406 Sum_probs=212.5
Q ss_pred ccCCCCCeeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHcCCCCCcEEEEeeCCC
Q 008757 148 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 227 (554)
Q Consensus 148 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 227 (554)
.|+..+|+.++|+.+++++..+...+++||.|+.++..+.|+||.++.|.++...+
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~------------------------ 191 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDA------------------------ 191 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCc------------------------
Confidence 35677899999999999998888889999999987656889999998775431000
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhhcccccCCCCHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 008757 228 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 307 (554)
Q Consensus 228 ~~~~~~~~~~~~~~p~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~g~~~~~~~~~~~~~~~~d~ 307 (554)
.|
T Consensus 192 ------------------------------------------------------------~g------------------ 193 (411)
T TIGR03224 192 ------------------------------------------------------------SG------------------ 193 (411)
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCcccccCCCCCCC---CCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCC
Q 008757 308 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 384 (554)
Q Consensus 308 l~~fp~~~~p~~~ll~~~~p~~~pR~YSIaSsp~~~---~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~ 384 (554)
.+...|+|||||+|... .+.++|+|+.+.. ...|+.+.|.+|+||+++.+|+
T Consensus 194 -------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~Gd----- 248 (411)
T TIGR03224 194 -------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKGD----- 248 (411)
T ss_pred -------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCcC-----
Confidence 12346999999987421 1479999987642 3446667899999999976654
Q ss_pred ceeeEEEecCC-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHc
Q 008757 385 SWAPIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 463 (554)
Q Consensus 385 ~~~~v~~~~~~-F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~ 463 (554)
.+.+..+.|. |.+|....+|+||||+|||||||+||++++...... ...++++||||+|+.+ |++|.+||++|.+.
T Consensus 249 -~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~-~~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~ 325 (411)
T TIGR03224 249 -KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDH-GEGGKLMLFFGARTKE-ELPYFGPLQKLPKD 325 (411)
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhc-CCCCCEEEEEecCccc-cchHHHHHHHHHhc
Confidence 3677778675 677755568999999999999999999998754221 1247999999999997 99999999999865
Q ss_pred CCcCeEEEEEccCC-CCcccchhhhcccHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008757 464 GALSQLIVAFSREG-PTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVK 541 (554)
Q Consensus 464 ~~~~~l~~a~Sr~~-~~~~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~ 541 (554)
.. ++++++||+. ..++|||+.+.+..+.+.+++. .++.||+||| ++|+++|.+.|.++..+. ++. .+++++
T Consensus 326 ~~--~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~-~~~---~~~~~~ 398 (411)
T TIGR03224 326 FI--DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATN-GLS---WETLEP 398 (411)
T ss_pred Cc--eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHc-CcC---HHHHHH
Confidence 42 5778999964 3689999999988777777764 4689999999 899999999999999765 443 467999
Q ss_pred HHHHCCCeeEeeC
Q 008757 542 NLQMTGRYLRDVW 554 (554)
Q Consensus 542 ~l~~~~Ry~~dvw 554 (554)
+|+++|||+.|+|
T Consensus 399 ~l~~~~r~~~e~~ 411 (411)
T TIGR03224 399 RLRAEGRLHLETY 411 (411)
T ss_pred HHHHCCCeEEecC
Confidence 9999999999999
No 19
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1.8e-33 Score=287.78 Aligned_cols=213 Identities=29% Similarity=0.463 Sum_probs=167.3
Q ss_pred CCcccccCCCCCCC---CCeEEEEEEEEEeeCCCCC----cccCccchhhhccCCCCcCCCCceeeEEEecCCCCC-CC-
Q 008757 330 QPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGR----VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PA- 400 (554)
Q Consensus 330 ~pR~YSIaSsp~~~---~~~i~l~v~~v~~~~~~g~----~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~l-p~- 400 (554)
..|+|||||+|... ..+++|+|+.+.+.++... ...|.+|+||+++.+|+ .+.|..+.|.|.+ +.
T Consensus 80 ~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~~~ 153 (307)
T PLN03116 80 NVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD------KVQITGPSGKVMLLPEE 153 (307)
T ss_pred CceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC------EEEEEEecCCceeCCCC
Confidence 47999999999532 2379999987654433111 25699999999965543 3678888888876 43
Q ss_pred CCCCCeEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCC-cCeEEEEEccCCC
Q 008757 401 DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP 478 (554)
Q Consensus 401 ~~~~piimIa~GtGIAPf~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~l~~a~Sr~~~ 478 (554)
+..+|+||||+|||||||+||++++...... ....++++||||+|+.+ |++|.+||++|++... .++++.++||+..
T Consensus 154 ~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~~l~~~~~~~~~~~~~~sr~~~ 232 (307)
T PLN03116 154 DPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQK 232 (307)
T ss_pred CCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHHHHHHhCCCcEEEEEEEccCCc
Confidence 4567999999999999999999987653211 11136899999999987 9999999999988764 5688999999753
Q ss_pred ----CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeeEeeC
Q 008757 479 ----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 479 ----~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
.++||++.|.+..+.++..+..++.+|+||| +.|++++.+.|.+++.+. |++ |++.++.|+++|||++|+|
T Consensus 233 ~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~-g~~---~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 233 NKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEER-GES---WEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred ccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHc-Ccc---HHHHHHHHHHcCceEEecC
Confidence 3689999888766666555556789999999 899999999999988775 453 5689999999999999999
No 20
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=6.1e-33 Score=281.41 Aligned_cols=225 Identities=31% Similarity=0.491 Sum_probs=175.8
Q ss_pred ChHHHHHHhcCC--------CCCcccccCCCCCCC---CCeEEEEEEEEEeeCCCC-CcccCccchhhhccCCCCcCCCC
Q 008757 317 PLGVFFAAIVPR--------LQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDC 384 (554)
Q Consensus 317 p~~~ll~~~~p~--------~~pR~YSIaSsp~~~---~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~~~~~~~~ 384 (554)
.+||++....|. ..+|+|||||+|... ++.++|+|+.+...++.+ ..+.|.+|+||+++.+|+
T Consensus 42 ~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 116 (286)
T cd06208 42 LEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD----- 116 (286)
T ss_pred cCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC-----
Confidence 357776443232 247999999998632 468999998875544432 456699999999975543
Q ss_pred ceeeEEEecCCCCCC-CCCCCCeEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEcccCCCCCCCcHHHHHHHHH
Q 008757 385 SWAPIFVRQSNFKLP-ADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 462 (554)
Q Consensus 385 ~~~~v~~~~~~F~lp-~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~del~~~~~ 462 (554)
.+.+..+.|.|.+. .+..+|+||||+|||||||+||++++...... ....++++||||+|+++ |++|.++|+++.+
T Consensus 117 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 194 (286)
T cd06208 117 -DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPK 194 (286)
T ss_pred -EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHH
Confidence 36788887877654 44567999999999999999999998754211 11236899999999997 9999999999998
Q ss_pred cC-CcCeEEEEEccCCC----CcccchhhhcccHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHH
Q 008757 463 SG-ALSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 536 (554)
Q Consensus 463 ~~-~~~~l~~a~Sr~~~----~~~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a 536 (554)
.. ...+++.++||++. .++||++.+.+..+.+++.+. .++.||+||| ++|+++|.+.|.+++. . ..+|
T Consensus 195 ~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~--~---~~~~ 268 (286)
T cd06208 195 QYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE--G---GLAW 268 (286)
T ss_pred hCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh--c---cHHH
Confidence 64 34588999998753 578999999887777777664 4469999999 8999999999999987 2 2579
Q ss_pred HHHHHHHHHCCCeeEeeC
Q 008757 537 ESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 537 ~~~~~~l~~~~Ry~~dvw 554 (554)
++++++|+++|||.+|+|
T Consensus 269 ~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 269 EEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHcCCeEEecC
Confidence 999999999999999999
No 21
>PRK05723 flavodoxin; Provisional
Probab=99.92 E-value=2.2e-25 Score=203.40 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=90.3
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCc-hHHHHHHHHHHHHHHHcCCcccccccccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGD 79 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~L~~lGa~~~~~~~~~d 79 (554)
+.+||++||||+|+||+|+..||++|+...+ ..|++++|||||||||.| ++||.+++++|++|+++||+|+++++++|
T Consensus 49 ~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~-~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D 127 (151)
T PRK05723 49 EALLAVTSTTGMGELPDNLMPLYSAIRDQLP-AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLD 127 (151)
T ss_pred CeEEEEECCCCCCCCchhHHHHHHHHHhcCc-cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEee
Confidence 3689999999999999999999999985422 259999999999999999 79999999999999999999999999999
Q ss_pred CC--CCcHhhHHHHHHHHhHHHH
Q 008757 80 DD--QCIEDDFSAWRELVWPELD 100 (554)
Q Consensus 80 ~~--~~~~~~~~~W~~~l~~~l~ 100 (554)
++ .+.+++|++|++.+|++|.
T Consensus 128 ~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 128 ASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred cCCCCChHHHHHHHHHHHHHHhc
Confidence 87 4689999999999998874
No 22
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.91 E-value=4.4e-24 Score=208.30 Aligned_cols=187 Identities=28% Similarity=0.487 Sum_probs=141.1
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEE
Q 008757 315 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 391 (554)
Q Consensus 315 ~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~ 391 (554)
...+||++...+|. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+++ .+.+..
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEEC
Confidence 34578888554453 57899999999863 36788888754 2489999999885543 367777
Q ss_pred ecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEE
Q 008757 392 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 471 (554)
Q Consensus 392 ~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~ 471 (554)
+.|.|.++....+|+||||+|||||||++++++..... ..++++|+||+|+.+ |++|.++|+++.+.+...+++.
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK----PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 88888766566789999999999999999999987542 236899999999987 9999999999998777778999
Q ss_pred EEccCCCCcccchhhhcccHHHHHHH-H-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 472 AFSREGPTKEYVQHKMMEKSSDIWNM-L-SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 472 a~Sr~~~~~~yVqd~l~~~~~~v~~~-l-~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+++|+.....+.+..+... +.+... . ..+..+|+||| +.|++.+++.|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 161 ALSRESEAKLGPGGRIDRE-AEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred EecCCCCCCCcccceeeHH-HHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 9998765443333333211 111111 1 35789999999 89999999998764
No 23
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.91 E-value=3.9e-24 Score=194.56 Aligned_cols=97 Identities=22% Similarity=0.331 Sum_probs=88.2
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
+.+||++||||+|++|+|++.|+++|+.. ...|++++|||||||||.|++||.+++.+|++|+++||+++.|++++|+
T Consensus 48 ~~li~~~sT~G~Ge~p~~~~~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~ 125 (146)
T PRK09004 48 GLWLIVTSTHGAGDLPDNLQPFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDV 125 (146)
T ss_pred CeEEEEECCCCCCCCChhHHHHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeC
Confidence 46899999999999999999999999854 2348999999999999999999999999999999999999999999998
Q ss_pred CC--CcHhhHHHHHHHHhHHH
Q 008757 81 DQ--CIEDDFSAWRELVWPEL 99 (554)
Q Consensus 81 ~~--~~~~~~~~W~~~l~~~l 99 (554)
+. +.|++|++|.+.++..|
T Consensus 126 ~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 126 LQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred CCCCCchhHHHHHHHHHHHhC
Confidence 64 46889999999988754
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.91 E-value=4.3e-24 Score=216.54 Aligned_cols=177 Identities=18% Similarity=0.353 Sum_probs=132.7
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEeeCCCC--CcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008757 331 PRYYSISSSPRVAPSRIHVTCALVYEKTPTG--RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 408 (554)
Q Consensus 331 pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g--~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~piim 408 (554)
.|+|||+|+|.. .+.++|+|+.... +.+ +...|.+|+||+++.+|+ .+.|..+.|.|.++. ..+|+||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~--~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vl 155 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATP--PPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVF 155 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEecc--CCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEE
Confidence 399999999863 4678888875422 111 234699999999876543 366777889998863 4679999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCC------CCccc
Q 008757 409 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG------PTKEY 482 (554)
Q Consensus 409 Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~------~~~~y 482 (554)
||+|||||||+||+++...... ...+++||||+|+.+ |.+|.+||+++.+.....+++.++|++. ..++|
T Consensus 156 IAgGtGItP~~s~l~~~~~~~~---~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~ 231 (283)
T cd06188 156 IGGGAGMAPLRSHIFHLLKTLK---SKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGF 231 (283)
T ss_pred EEecccHhHHHHHHHHHHhcCC---CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCccee
Confidence 9999999999999998765321 125899999999987 8999999999998766667888888753 14578
Q ss_pred chhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 483 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 483 Vqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
|++.+.+.. +.... ..+..+|+||| ++|++++.+.|.+.
T Consensus 232 v~~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~ 271 (283)
T cd06188 232 IHQVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDL 271 (283)
T ss_pred ecHHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 887765431 11110 23568999999 89999999988764
No 25
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.90 E-value=5.9e-24 Score=208.13 Aligned_cols=184 Identities=20% Similarity=0.305 Sum_probs=141.8
Q ss_pred CCCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEe
Q 008757 314 AKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 314 ~~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~ 392 (554)
.+..+||++.+.+|....|+|||+|.|.. .+.++|+|+.+ ..|.+|++|.+ +.+|+ .+.+..+
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGP 87 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecC
Confidence 34567888755556667999999999863 46788877654 24888999986 54443 3567777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.++.+..+++||||+|||||||++++++..... ...+++|+||+|+.. |++|.+||+++.+.....+++.+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 162 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG----SKRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPV 162 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEE
Confidence 8888887665788999999999999999999987542 136899999999987 89999999999987666688888
Q ss_pred EccCCC----CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 473 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 473 ~Sr~~~----~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+|++.+ .++|+++.+.+.. .+ ..+..+|+||| +.|++++.+.|.+.
T Consensus 163 ~s~~~~~~~g~~g~v~~~l~~~~---~~--~~~~~v~vCGp-~~m~~~~~~~l~~~ 212 (224)
T cd06189 163 LSEPEEGWQGRTGLVHEAVLEDF---PD--LSDFDVYACGS-PEMVYAARDDFVEK 212 (224)
T ss_pred eCCCCcCCccccccHHHHHHhhc---cC--ccccEEEEECC-HHHHHHHHHHHHHc
Confidence 998533 4678877665421 01 24678999999 89999999988763
No 26
>PRK08051 fre FMN reductase; Validated
Probab=99.90 E-value=8.1e-24 Score=208.30 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=136.3
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhh-ccCCCCcCCCCceeeEEEec
Q 008757 315 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 393 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~~~~~~~~~~~~v~~~~ 393 (554)
...+||++...++....|+|||+|.|.. .+.++|+|+.+ ..|..|.++. ++.+|+ .+.+..|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~------~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGAS---------ELNLYAMAVMERILKDG------EIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEc---------CCCcchHHHHHHcCCCC------EEEEEcCC
Confidence 4457888755446667899999999852 46788877643 1244455554 444433 36777788
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 394 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 394 ~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
|.|.++.+..+|+||||+||||||+++++++..... ...+++|+||+|+.+ |.+|.+||+++++.....+++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~----~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALAQG----PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC----CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 888876555689999999999999999999987532 136899999999997 899999999999887666888888
Q ss_pred ccCCC----CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHH-HHH
Q 008757 474 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTI 524 (554)
Q Consensus 474 Sr~~~----~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L-~~i 524 (554)
|++++ .++||++.+.+.. .+ ..+..+|+||| ++|+++|.+.| .+.
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~~---~~--~~~~~vyicGp-~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQDF---GS--LAEYDIYIAGR-FEMAKIARELFCRER 217 (232)
T ss_pred CCCCCCcccceeeehHHHHhhc---cC--cccCEEEEECC-HHHHHHHHHHHHHHc
Confidence 87543 4677777665421 11 13568999999 89999999988 663
No 27
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.90 E-value=6.8e-24 Score=220.60 Aligned_cols=183 Identities=18% Similarity=0.277 Sum_probs=140.9
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEec
Q 008757 315 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 393 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~~ 393 (554)
...+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+| + .+.+..|.
T Consensus 131 ~~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G-~-----~v~v~gP~ 194 (339)
T PRK07609 131 QYLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKER-D-----ILRIEGPL 194 (339)
T ss_pred ccCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCC-C-----EEEEEcCc
Confidence 3457888865556567899999999863 47888888654 34889999985 5443 3 36677788
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 394 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 394 ~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
|.|.++....+|+||||+|||||||+||+++....+ ...+++||||+|+++ |+++.+++++|.+....++++.++
T Consensus 195 G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~----~~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~ 269 (339)
T PRK07609 195 GTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG----IQRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVV 269 (339)
T ss_pred eeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC----CCCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEe
Confidence 999987666789999999999999999999987532 136899999999987 888899999998776666888899
Q ss_pred ccCC------CCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 474 SREG------PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 474 Sr~~------~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
||+. ..++||++.+.+.. .+ ..+..+|+||| +.|++++.+.|.+.
T Consensus 270 s~~~~~~~~~g~~G~v~~~~~~~~---~~--~~~~~vy~CGp-~~m~~~~~~~l~~~ 320 (339)
T PRK07609 270 SDALDDDAWTGRTGFVHQAVLEDF---PD--LSGHQVYACGS-PVMVYAARDDFVAA 320 (339)
T ss_pred cCCCCCCCccCccCcHHHHHHhhc---cc--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 9842 24678887665421 11 14579999999 89999999988763
No 28
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.90 E-value=2.1e-23 Score=207.24 Aligned_cols=185 Identities=19% Similarity=0.239 Sum_probs=132.2
Q ss_pred ChHHHHHHhcC--C-CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEec
Q 008757 317 PLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 393 (554)
Q Consensus 317 p~~~ll~~~~p--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~ 393 (554)
-+|||+..-++ . ...|+|||||+|. .+.++++|+.+ ..|.+|+||+++.+|+ .+.+..+.
T Consensus 32 ~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp~ 94 (248)
T PRK10926 32 TAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSEA 94 (248)
T ss_pred CCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecCC
Confidence 45677543222 1 2359999999985 34788777654 2489999999876654 35666664
Q ss_pred -CCCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcC-CcCeEE
Q 008757 394 -SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLI 470 (554)
Q Consensus 394 -~~F~lp~~-~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~-~~~~l~ 470 (554)
|.|.++.. ..+|+||||+|||||||+||++++...+ ...+++||||+|+.+ |++|.+||+++++.. ...+++
T Consensus 95 ~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v~ 169 (248)
T PRK10926 95 AGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE----RFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRIQ 169 (248)
T ss_pred CcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC----CCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEEE
Confidence 55666643 3479999999999999999999975432 136899999999987 999999999998764 344789
Q ss_pred EEEccCCC---CcccchhhhcccH-HHHHH-HH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 471 VAFSREGP---TKEYVQHKMMEKS-SDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 471 ~a~Sr~~~---~~~yVqd~l~~~~-~~v~~-~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
.++||+.. .+++|++.+.+.. ..... .+ ..++.+|+||| ++|++++.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 170 TVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 99998643 3577777654321 11111 11 24689999999 89999999887653
No 29
>PRK08105 flavodoxin; Provisional
Probab=99.90 E-value=9.7e-24 Score=192.63 Aligned_cols=96 Identities=27% Similarity=0.474 Sum_probs=87.4
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
+.+||++||||+|+||+|+..|+++|++. ...|++++|||||||||+|++||.+++++|++|+++||++|.|++++|+
T Consensus 50 ~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~ 127 (149)
T PRK08105 50 ELVLVVTSTTGQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDA 127 (149)
T ss_pred CeEEEEECCCCCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeC
Confidence 36899999999999999999999999853 2359999999999999999999999999999999999999999999998
Q ss_pred CC--CcHhhHHHHHHHHhHHH
Q 008757 81 DQ--CIEDDFSAWRELVWPEL 99 (554)
Q Consensus 81 ~~--~~~~~~~~W~~~l~~~l 99 (554)
+. +.++.|++|++. |..+
T Consensus 128 ~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 128 CETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred CCCCChHHHHHHHHHH-HHHH
Confidence 65 578899999998 7654
No 30
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.90 E-value=1.4e-23 Score=207.34 Aligned_cols=184 Identities=25% Similarity=0.359 Sum_probs=138.9
Q ss_pred CCChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEe
Q 008757 315 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~ 392 (554)
...+||++.+-+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..+
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECC
Confidence 345788875544544 5899999999863 46788877654 24889999974 55543 3567777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.++.+..+|+||||+|||||||++++++....+. ..+++||||+|+.+ |.+|.++|+++.+.....+++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD----TRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC----CCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 88888876556899999999999999999999865321 25899999999987 89999999999887665678888
Q ss_pred EccCCC------CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 473 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 473 ~Sr~~~------~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+||+.. .++|+++.+.+.. .. ...+..+|+||| +.|++++.+.|.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyvCGp-~~m~~~~~~~L~~~ 226 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHF---KN-DFRGHKAYLCGP-PPMIDACIKTLMQG 226 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhc---cc-ccccCEEEEECC-HHHHHHHHHHHHHc
Confidence 998632 3567776554321 00 014679999999 89999999998764
No 31
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.90 E-value=1.3e-23 Score=206.82 Aligned_cols=187 Identities=21% Similarity=0.216 Sum_probs=139.2
Q ss_pred CCChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEec
Q 008757 315 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 393 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~ 393 (554)
...+||++.+-+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++....++ .+.|..+.
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~-----~v~v~gP~ 87 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD-----ELELDGPY 87 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC-----EEEEECCc
Confidence 345688875555655 7899999998863 46788877643 24889999987433333 35677777
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 394 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 394 ~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
|.|.++.+..+++||||+|||||||++++++..... .....+++|+||+|+.+ |++|.++|+++.+.+..++++.++
T Consensus 88 G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~--~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 164 (232)
T cd06190 88 GLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP--YLSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAV 164 (232)
T ss_pred ccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc--cCCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEe
Confidence 888776555679999999999999999999987531 11236899999999987 999999999999887666788888
Q ss_pred ccCCC--------CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 474 SREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 474 Sr~~~--------~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
|++.. .++|+++.+.+... + ...+..||+||| ++|++++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLG---D-RLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhcc---C-CccccEEEEECC-HHHHHHHHHHHHHh
Confidence 87542 24566665543210 0 024689999999 89999999988764
No 32
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=1.8e-23 Score=206.99 Aligned_cols=186 Identities=19% Similarity=0.265 Sum_probs=139.3
Q ss_pred CChHHHHHHhcCCC----CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEE-
Q 008757 316 PPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 390 (554)
Q Consensus 316 ~p~~~ll~~~~p~~----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~- 390 (554)
..+||++.+-++.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||+++.+|+ .+.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGD------TIYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCC------EEEECc
Confidence 45688775433432 4699999998853 6788777644 2488999999876654 35676
Q ss_pred EecCCCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHc-CCcCe
Q 008757 391 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQ 468 (554)
Q Consensus 391 ~~~~~F~lp~~-~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~-~~~~~ 468 (554)
.+.|.|.++.. ..++++|||+|||||||++++++..... ..++++||||+|+++ |++|.+||+++.+. ...++
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE----RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC----CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 67788988765 4579999999999999999999986432 136899999999997 99999999999876 44557
Q ss_pred EEEEEccCCCC---cccchhhhcccHHHHHHHH-----hCCCEEEEecCCcchHHHHHHHHHHHHH
Q 008757 469 LIVAFSREGPT---KEYVQHKMMEKSSDIWNML-----SEGAYLYVCGDAKSMARDVHRTLHTIVQ 526 (554)
Q Consensus 469 l~~a~Sr~~~~---~~yVqd~l~~~~~~v~~~l-----~~~~~iyvCG~~~~M~~~v~~~L~~i~~ 526 (554)
++.++||+... ++|+++.+... .+.+.+ ..+..||+||| ++|++++.+.|.+...
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~--~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~ 225 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESG--ELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKGF 225 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhc--hhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 88888887543 67888866531 122111 24689999999 8999999999877543
No 33
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.90 E-value=8e-24 Score=208.82 Aligned_cols=184 Identities=22% Similarity=0.314 Sum_probs=138.3
Q ss_pred CCChHHHHHHhcCC-CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEe
Q 008757 315 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 315 ~~p~~~ll~~~~p~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~ 392 (554)
...+||++.+.+|. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecC
Confidence 44578888554453 34799999999863 46788777643 23889999998 55543 3667777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.++.+..+++||||+|||||||+++++++.... ...+++||||+|+.+ |.+|.++|+++.+.....+++.+
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG----EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC----CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 7889887655678999999999999999999976532 126899999999987 89999999999987666688888
Q ss_pred EccCCC----CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 473 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 473 ~Sr~~~----~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+||+.. .++++++.+.+. +.+ ......+|+||| +.|++++++.|.+.
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~---l~~-~~~~~~vyicGp-~~m~~~~~~~l~~~ 223 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALRED---LAS-SDAKPDIYLCGP-PGMVDAAFAAAREA 223 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHh---hcc-cCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 887532 456666655432 111 123578999999 89999999988763
No 34
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.90 E-value=2e-23 Score=222.00 Aligned_cols=184 Identities=17% Similarity=0.252 Sum_probs=135.5
Q ss_pred CChHHHHHHhcC--C--C-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeE
Q 008757 316 PPLGVFFAAIVP--R--L-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 389 (554)
Q Consensus 316 ~p~~~ll~~~~p--~--~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v 389 (554)
..+||++...++ . . .+|+|||||+|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v 247 (399)
T PRK13289 185 FKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVGD------VLEL 247 (399)
T ss_pred CCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCCC------EEEE
Confidence 457888855433 1 1 249999999986 45788776543 23999999987 65543 3667
Q ss_pred EEecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeE
Q 008757 390 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 469 (554)
Q Consensus 390 ~~~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l 469 (554)
..|.|.|.++.+..+|+||||+|||||||+||+++..... ...+++||||+|+.+ |++|.+||+++.+.....++
T Consensus 248 ~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~ 322 (399)
T PRK13289 248 AAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ----PKRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKA 322 (399)
T ss_pred EcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC----CCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEE
Confidence 7788999998766789999999999999999999986532 236899999999997 99999999999987756688
Q ss_pred EEEEccCCCC----cccch-hhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 470 IVAFSREGPT----KEYVQ-HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 470 ~~a~Sr~~~~----~~yVq-d~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+.++|++... ..|++ .++. .+.+.+.+ ..++.+||||| ++|++++.+.|.+.
T Consensus 323 ~~~~s~~~~~~~~~~~~~~~g~i~--~~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 323 HTWYREPTEQDRAGEDFDSEGLMD--LEWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred EEEECCCccccccCCcccccCccc--HHHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8999985321 11222 1221 12233333 24789999999 89999999988763
No 35
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.89 E-value=2.7e-23 Score=203.96 Aligned_cols=180 Identities=24% Similarity=0.350 Sum_probs=138.1
Q ss_pred CCChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEe
Q 008757 315 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~ 392 (554)
...+||++.+.+|.. ..|+|||+|+|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECC
Confidence 345788875544544 4799999998863 6788877643 24889999998 55443 3567777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.++.. .+|++|||+||||||+++++++..... ..++++|+||+|+.+ |++|.++|++|.+.....+++.+
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 788877644 488999999999999999999986532 236899999999987 99999999999987666688888
Q ss_pred EccCCC---CcccchhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 473 FSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 473 ~Sr~~~---~~~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+|++.. .++|+++.+.+. .+ ..+..+|+||| +.|++++++.|.+.
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 215 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGP-PPMVDAVRSWLDEQ 215 (228)
T ss_pred EcCCCccCCCcCCccHHHHHh------hccCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 998543 456888766542 12 24578999999 89999999998763
No 36
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.89 E-value=1.5e-23 Score=222.92 Aligned_cols=180 Identities=19% Similarity=0.340 Sum_probs=136.6
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEEE
Q 008757 330 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 409 (554)
Q Consensus 330 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~piimI 409 (554)
..|+|||+|.|.. .+.++|+|+.+......++...|.+|+||+++.+|+ .+.|..|.|.|.++ +..+|+|||
T Consensus 209 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivlI 280 (409)
T PRK05464 209 VIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVFI 280 (409)
T ss_pred eeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEEE
Confidence 4699999999863 467999887654433333455699999999876654 36778888999876 356899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCC------Ccccc
Q 008757 410 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYV 483 (554)
Q Consensus 410 a~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~------~~~yV 483 (554)
|+|||||||+||+++.....+ ...+++||||+|+++ |.+|.++|+++.+.....+++.++|++.. .+++|
T Consensus 281 AgGtGIaP~~sml~~~l~~~~---~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 356 (409)
T PRK05464 281 GGGAGMAPMRSHIFDQLKRLK---SKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFI 356 (409)
T ss_pred EeccChhHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCcccee
Confidence 999999999999998765321 136899999999997 99999999999887766688888887532 45777
Q ss_pred hhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 484 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 484 qd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
++.+.+.. +.+.. ..+..||+||| ++|++++.+.|.+.
T Consensus 357 ~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~ 395 (409)
T PRK05464 357 HNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDL 395 (409)
T ss_pred CHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 77665431 11111 24579999999 89999999988663
No 37
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.89 E-value=2.4e-23 Score=216.22 Aligned_cols=181 Identities=19% Similarity=0.326 Sum_probs=139.5
Q ss_pred CCChHHHHHHhcCCCC-CcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEe
Q 008757 315 KPPLGVFFAAIVPRLQ-PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~~-pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~ 392 (554)
...+|||+.+.+|... .|+|||||+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 136 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP 199 (340)
T PRK11872 136 DFLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAP 199 (340)
T ss_pred CcCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcC
Confidence 3457888755445443 699999999863 47889888754 24889999975 54443 3667778
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.++. ..+|+||||+|||||||+||+++..... ..++++||||+|+++ |++|.++|++|.+....++++.+
T Consensus 200 ~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~ 273 (340)
T PRK11872 200 LGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQG----CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPV 273 (340)
T ss_pred cceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcC----CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEE
Confidence 89998864 3589999999999999999999986532 136899999999997 99999999999987766788888
Q ss_pred EccCCC----CcccchhhhcccHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHH
Q 008757 473 FSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 473 ~Sr~~~----~~~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
.|+.+. .++||++.+.+. .+. .+..+|+||| ++|++++.+.|.+.
T Consensus 274 ~s~~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp-~~mv~~~~~~L~~~ 323 (340)
T PRK11872 274 VSKASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGP-PPMVEAVKQWLDEQ 323 (340)
T ss_pred EeCCCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 887532 467888776542 122 3468999999 89999999998764
No 38
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.89 E-value=2.8e-23 Score=203.20 Aligned_cols=182 Identities=22% Similarity=0.294 Sum_probs=139.2
Q ss_pred CChHHHHHHhcCCC--CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEe
Q 008757 316 PPLGVFFAAIVPRL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 316 ~p~~~ll~~~~p~~--~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~ 392 (554)
..+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+.. ..|.+|+||++ +.+|+ .+.|..+
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSGP 87 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeCC
Confidence 44688875544543 3799999998863 46788877643 24899999998 65543 3667777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.++.+...++||||+|||||||++|+++..... ...+++|+|++|+.+ |++|.++|+++.+.....++..+
T Consensus 88 ~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 88 YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEE
Confidence 8888887655678999999999999999999987532 236899999999987 99999999999887666678778
Q ss_pred EccCCC----CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 473 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 473 ~Sr~~~----~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
++++.. .++|+++.+.+.. .+ ..++.+|+||| +.|++++++.|.+.
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~vcGp-~~~~~~v~~~l~~~ 212 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRDG---PD--WADHDIYICGP-PAMVDATVDALLAR 212 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHhc---cc--cccCEEEEECC-HHHHHHHHHHHHHc
Confidence 887532 4678887765421 11 24689999999 89999999998764
No 39
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.89 E-value=4.6e-23 Score=218.96 Aligned_cols=181 Identities=18% Similarity=0.329 Sum_probs=135.0
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008757 329 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 408 (554)
Q Consensus 329 ~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~piim 408 (554)
...|+|||||+|.. .+.++|+|+.+.......+...|.+|+||+++.+|+ .+.+..|.|.|.+.+ ..+|+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvl 275 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVF 275 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEE
Confidence 34699999999863 478999887652211112245699999999876654 367888889998763 4689999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCC------Cccc
Q 008757 409 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 482 (554)
Q Consensus 409 Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~------~~~y 482 (554)
||+|||||||+||+++.....+ ...+++||||+|+++ |.+|.++|+++.+.....+++.++|++.. .+++
T Consensus 276 IAgGtGIaP~lsmi~~~l~~~~---~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 351 (405)
T TIGR01941 276 IGGGAGMAPMRSHIFDQLKRLK---SKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGF 351 (405)
T ss_pred EecCcCcchHHHHHHHHHhcCC---CCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccce
Confidence 9999999999999998765321 135899999999987 89999999999887766678888887532 3567
Q ss_pred chhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 483 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 483 Vqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
|++.+.+. .+.+.. ..++.+|+||| ++|++++.+.|.+.
T Consensus 352 v~~~l~~~--~l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~ 391 (405)
T TIGR01941 352 IHNVLYEN--YLKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDL 391 (405)
T ss_pred eCHHHHHh--hhcccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 77766432 111111 24678999999 89999999988763
No 40
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.89 E-value=4.2e-23 Score=209.66 Aligned_cols=180 Identities=21% Similarity=0.268 Sum_probs=133.2
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCC
Q 008757 316 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 395 (554)
Q Consensus 316 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~ 395 (554)
..+||++...+|....|+|||+|+|.. .+.++|+|+.+ |.+|.||+++.+|+ .+.|..|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~~-----------G~~S~~L~~l~~Gd------~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRRA-----------GRVTTVIHRLKEGD------IVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEeC-----------ChHHHHHHhCCCCC------EEEEeCCCCC
Confidence 457888854445555799999999853 46788877632 88999999876653 3567777676
Q ss_pred -CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEc
Q 008757 396 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 474 (554)
Q Consensus 396 -F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 474 (554)
|.++....+|+||||+|||||||+||++++.... ....+++|+||+|+.+ |++|++||++|++.....+++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~---~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR---WKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhcC---CCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 6665444579999999999999999999876532 1236899999999987 9999999999987766667888899
Q ss_pred cCCCC---------------cccchhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 475 REGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 475 r~~~~---------------~~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
|+... ++++++.+.+. .. ..+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 85432 22333322211 11 23578999999 89999999988764
No 41
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.89 E-value=6.5e-23 Score=212.50 Aligned_cols=184 Identities=16% Similarity=0.273 Sum_probs=134.8
Q ss_pred CChHHHHHHhcCC--CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEe
Q 008757 316 PPLGVFFAAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 316 ~p~~~ll~~~~p~--~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~ 392 (554)
.-+|||+.+-++. ...|+|||||+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..+
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP 100 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDA 100 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCC
Confidence 3468887443342 23599999999863 46788887654 34889999974 55543 3567777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.++....+|+||||+|||||||+||+++..... ...+++|+||+|+++ |++|.+||+++++.....+++..
T Consensus 101 ~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~----~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 175 (332)
T PRK10684 101 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR----PQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLV 175 (332)
T ss_pred ccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----CCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEE
Confidence 8899987666689999999999999999999876532 136899999999987 99999999999987654467666
Q ss_pred EccCCCCcccchhhhcccHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHH
Q 008757 473 FSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 473 ~Sr~~~~~~yVqd~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
.+++. .++|.+.++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 176 AENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred eccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 66543 345566655431 2222221 3679999999 89999999988764
No 42
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.89 E-value=8.8e-23 Score=200.89 Aligned_cols=183 Identities=22% Similarity=0.347 Sum_probs=137.5
Q ss_pred CCChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEe
Q 008757 315 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~ 392 (554)
...+||++.+.+|.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..+
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEcC
Confidence 345788875544543 5799999999863 46788877653 24889999997 55543 3667777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.++....+++||||+|||||||++++++..... ..++++|+||+|+.+ +++|.++|+++.+.....+++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG----SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC----CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 8889887655679999999999999999999987542 136799999999987 89999999999876655577788
Q ss_pred EccCCC------CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 473 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 473 ~Sr~~~------~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+|++.. ..+++++.+.+.. .+ ..+..+|+||| +.|++++.+.|.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~~CGp-~~~~~~v~~~l~~~ 219 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNE---AT--LAGCDVYLCGP-PPMIDAALPVLEMS 219 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhc---cC--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 898542 2456665443321 11 14689999999 89999999988764
No 43
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.88 E-value=2.1e-22 Score=198.01 Aligned_cols=184 Identities=18% Similarity=0.330 Sum_probs=133.1
Q ss_pred CChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEE
Q 008757 316 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 391 (554)
Q Consensus 316 ~p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~ 391 (554)
..+||++..-++ ...+|+|||+|.|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 90 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMG 90 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeC
Confidence 346777643322 12469999999886 47788877643 23889999984 65543 366777
Q ss_pred ecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEE
Q 008757 392 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 471 (554)
Q Consensus 392 ~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~ 471 (554)
|.|.|.++.....++||||+||||||++|++++..... ...+++||||+|+++ |++|.+||+++.+.....+++.
T Consensus 91 P~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 165 (231)
T cd06191 91 PQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA----PESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLC 165 (231)
T ss_pred CccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEE
Confidence 88999887666678999999999999999999976532 136899999999987 8999999999988766668889
Q ss_pred EEccCCCCcccchhhhcccHHHHHH-HHh--CCCEEEEecCCcchHHHHHHHHHH
Q 008757 472 AFSREGPTKEYVQHKMMEKSSDIWN-MLS--EGAYLYVCGDAKSMARDVHRTLHT 523 (554)
Q Consensus 472 a~Sr~~~~~~yVqd~l~~~~~~v~~-~l~--~~~~iyvCG~~~~M~~~v~~~L~~ 523 (554)
++||+.....+.+.+.... +.+.+ ++. .++.+|+||| +.|++++++.|.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~ 218 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGE-QSLGAALIPDRLEREAFICGP-AGMMDAVETALKE 218 (231)
T ss_pred EECCCCCCccccCCccccc-HHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHH
Confidence 9998653322222221111 11222 222 3579999999 8999999998865
No 44
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.88 E-value=2.7e-22 Score=196.01 Aligned_cols=185 Identities=18% Similarity=0.225 Sum_probs=134.0
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecC
Q 008757 315 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 394 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~ 394 (554)
...+||++.+-++....|+|||+|+|.. .+.++|+|+.+ ..|.+|.||++....++ .+.|..|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~-----~v~i~gP~G 87 (222)
T cd06194 23 PYLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRK---------PNGAFSGWLGEEARPGH-----ALRLQGPFG 87 (222)
T ss_pred CcCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEec---------cCCccchHHHhccCCCC-----EEEEecCcC
Confidence 3457888755456667899999999863 36788777543 23889999998533333 356777778
Q ss_pred CCCCCC-CCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 395 NFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 395 ~F~lp~-~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
.|.+.. ...++++|||+|||||||+++++++.... ..++++||||+|+.+ +++|.+||+++.+.....+++.+.
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 162 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG----HQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPCV 162 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC----CCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEEE
Confidence 876643 45678999999999999999999986532 136899999999997 899999999999866555788888
Q ss_pred ccCCCCcc-cchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 474 SREGPTKE-YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 474 Sr~~~~~~-yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+++..... +..+.+.+ .+. .+..++.+|+||| +.|++++++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~---~~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~ 209 (222)
T cd06194 163 SEGSQGDPRVRAGRIAA---HLP-PLTRDDVVYLCGA-PSMVNAVRRRAFLA 209 (222)
T ss_pred ccCCCCCcccccchhhh---hhc-cccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 88643321 11111111 111 1235789999999 89999999998764
No 45
>PRK05713 hypothetical protein; Provisional
Probab=99.88 E-value=1.9e-22 Score=207.18 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=128.4
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecC-
Q 008757 316 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS- 394 (554)
Q Consensus 316 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~- 394 (554)
..+|||+...++....|+|||||+|.. .+.++|+|+.+ ..|.+|.||.++.+|+. +.+..+.|
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd~------v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGDL------LRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCCE------EEEccCCCC
Confidence 457888754435556899999999863 46788877643 24889999987766542 45555554
Q ss_pred CCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 395 NFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 395 ~F~lp~~-~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
.|.++.+ ..+|+||||+|||||||+|++++....+ ...+++|+||+|+.+ |++|.+||++|.+.....++..+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG----HQGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC----CCCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 5666544 4689999999999999999999976532 136899999999987 999999999999776555677666
Q ss_pred ccCCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 474 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 474 Sr~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
++ ++++.+.+. .. ...+..+|+||| ++|++++.+.|.+.
T Consensus 258 ~~------~~~~~l~~~----~~-~~~~~~vyiCGp-~~mv~~~~~~L~~~ 296 (312)
T PRK05713 258 AA------QLPAALAEL----RL-VSRQTMALLCGS-PASVERFARRLYLA 296 (312)
T ss_pred Cc------chhhhhhhc----cC-CCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 53 233333221 00 124578999999 89999999998753
No 46
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.87 E-value=3.5e-22 Score=195.97 Aligned_cols=180 Identities=23% Similarity=0.352 Sum_probs=133.8
Q ss_pred CChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecC
Q 008757 316 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 394 (554)
Q Consensus 316 ~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~ 394 (554)
..+||++...++.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+..+.++ .+.+..|.|
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~-----~v~i~gP~G 92 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE-----RLTVRGPFG 92 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC-----EEEEeCCCc
Confidence 34788875444443 4799999999863 46788877643 23889999966433333 366777778
Q ss_pred CCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHc-CCcCeEEEEE
Q 008757 395 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVAF 473 (554)
Q Consensus 395 ~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~-~~~~~l~~a~ 473 (554)
.|.++. ..+++||||+|||||||++++++..... ...+++|+||+|+++ |.+|.++|+++++. ....+++.++
T Consensus 93 ~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~ 166 (227)
T cd06213 93 DFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG----TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPVL 166 (227)
T ss_pred ceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEEe
Confidence 898864 3478999999999999999999986532 136799999999987 99999999999865 3445777888
Q ss_pred ccCCC------CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 474 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 474 Sr~~~------~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
|++.. .++++++.+.+. +..+..+|+||| +.|++++++.|.+.
T Consensus 167 s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~ 215 (227)
T cd06213 167 SEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRAL 215 (227)
T ss_pred cCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 87532 335676655432 235789999999 89999999988763
No 47
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.87 E-value=5.3e-22 Score=197.88 Aligned_cols=181 Identities=20% Similarity=0.318 Sum_probs=135.5
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecC
Q 008757 315 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 394 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~ 394 (554)
+..+||++.+-+|....|+|||+|+|.. .+.++|+|+. .|..|+||+++.+|+ .+.+..|.|
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~G 88 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPFG 88 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCcC
Confidence 4557888765545555699999999863 4678877753 278899999775543 356777767
Q ss_pred C-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 395 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 395 ~-F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
. |.++....+|+||||+||||||+++|+++..... ...++++|+|+.|+.+ |++|+++|+++.+. ...++..++
T Consensus 89 ~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~---~~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~ 163 (253)
T cd06221 89 NGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNR---EDYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTV 163 (253)
T ss_pred CCcccccccCCeEEEEccccchhHHHHHHHHHHhcc---ccCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEe
Confidence 6 6665435689999999999999999999987642 1136899999999987 89999999999987 445788888
Q ss_pred ccCCC----CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 474 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 474 Sr~~~----~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
|++.. ..+++++.+.+.. . ...+..||+||| +.|++++.+.|.+.
T Consensus 164 s~~~~~~~~~~g~v~~~l~~~~---~--~~~~~~vyicGp-~~mv~~~~~~L~~~ 212 (253)
T cd06221 164 DRAEEGWTGNVGLVTDLLPELT---L--DPDNTVAIVCGP-PIMMRFVAKELLKL 212 (253)
T ss_pred CCCCCCccCCccccchhHHhcC---C--CcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 87542 3466766554321 0 025689999999 99999999988764
No 48
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.86 E-value=1.5e-21 Score=193.42 Aligned_cols=168 Identities=24% Similarity=0.389 Sum_probs=126.9
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008757 330 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 408 (554)
Q Consensus 330 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~piim 408 (554)
.+|+|||+|+|....+.++|+|+.+ ..|.+|.||++ +.+|+ .+.+..+.|.|.++.+..+++||
T Consensus 63 ~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~G~f~l~~~~~~~~v~ 127 (243)
T cd06216 63 HWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQPQGDFVLPDPLPPRLLL 127 (243)
T ss_pred EEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEECCceeeecCCCCCCCEEE
Confidence 3699999998852247788877653 23888999986 44543 35677777889988765689999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCCcccchhhhc
Q 008757 409 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMM 488 (554)
Q Consensus 409 Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~~~yVqd~l~ 488 (554)
||+||||||++|++++..... ...+++||||+|+.+ |.+|.++|+++.+.....+++..+|++ ...+++...+
T Consensus 128 iagG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s~~-~~~g~~~~~~- 200 (243)
T cd06216 128 IAAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHLLYTRE-ELDGRLSAAH- 200 (243)
T ss_pred EecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEEEEcCC-ccCCCCCHHH-
Confidence 999999999999999986532 236899999999987 899999999998766556788888875 3344543322
Q ss_pred ccHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHHH
Q 008757 489 EKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIV 525 (554)
Q Consensus 489 ~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i~ 525 (554)
+.+.+ ..++.+|+||| +.|++++.+.|.+..
T Consensus 201 -----l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~G 233 (243)
T cd06216 201 -----LDAVVPDLADRQVYACGP-PGFLDAAEELLEAAG 233 (243)
T ss_pred -----HHHhccCcccCeEEEECC-HHHHHHHHHHHHHCC
Confidence 22222 23579999999 899999999987643
No 49
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.86 E-value=3.2e-21 Score=191.57 Aligned_cols=166 Identities=20% Similarity=0.327 Sum_probs=125.7
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEE
Q 008757 330 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 408 (554)
Q Consensus 330 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~piim 408 (554)
..|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..+.|.|.++.+..+++||
T Consensus 56 ~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~G~~~~~~~~~~~lll 118 (247)
T cd06184 56 QIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLEVSAPAGDFVLDEASDRPLVL 118 (247)
T ss_pred eeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEcCCCceECCCCCCCcEEE
Confidence 4589999999853 4677766532 24889999998 65544 35677777889987655678999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCC--------c
Q 008757 409 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT--------K 480 (554)
Q Consensus 409 Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~--------~ 480 (554)
||+|||||||++++++..... ...+++||||+|+++ +.+|.++|+++.+.....+++.++|+.... .
T Consensus 119 iagGtGiaP~~~~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 193 (247)
T cd06184 119 ISAGVGITPMLSMLEALAAEG----PGRPVTFIHAARNSA-VHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHA 193 (247)
T ss_pred EeccccHhHHHHHHHHHHhcC----CCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEEEEEECCCCccccccccccc
Confidence 999999999999999987531 136899999999987 889999999998875566888899986432 2
Q ss_pred ccchhhhcccHHHHHHH-HhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 481 EYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 481 ~yVqd~l~~~~~~v~~~-l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
++++.. .+.+. ...+..+|+||| +.|++++++.|.+.
T Consensus 194 g~~~~~------~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 231 (247)
T cd06184 194 GRIDLA------LLRELLLPADADFYLCGP-VPFMQAVREGLKAL 231 (247)
T ss_pred CccCHH------HHhhccCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 333321 22221 235789999999 89999999988763
No 50
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.86 E-value=1.3e-21 Score=204.64 Aligned_cols=189 Identities=19% Similarity=0.319 Sum_probs=132.6
Q ss_pred CCChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEE
Q 008757 315 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 391 (554)
Q Consensus 315 ~~p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~ 391 (554)
...+||++.+.++ ....|+|||+|+|. .+.++|+|+.+ ..|.+|+||++..+.|+ .+.+..
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd-----~v~v~g 95 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRPGD-----TLEVMA 95 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCCCC-----EEEEeC
Confidence 3457888855433 12369999999984 46788888654 23889999975333333 356777
Q ss_pred ecCCCCCCCCC--CCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCC-cCe
Q 008757 392 RQSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 468 (554)
Q Consensus 392 ~~~~F~lp~~~--~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~ 468 (554)
+.|.|.++.+. .+++||||+|||||||+||+++..... ...+++|+||+|+++ |.+|.+||+++++... ..+
T Consensus 96 P~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 170 (352)
T TIGR02160 96 PQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE----PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRFH 170 (352)
T ss_pred CceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC----CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcEE
Confidence 77889876542 378999999999999999999976532 136899999999987 9999999999987654 357
Q ss_pred EEEEEccCCCCcccchhhhcc-cHH-HHHHHH--hCCCEEEEecCCcchHHHHHHHHHHHH
Q 008757 469 LIVAFSREGPTKEYVQHKMME-KSS-DIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIV 525 (554)
Q Consensus 469 l~~a~Sr~~~~~~yVqd~l~~-~~~-~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i~ 525 (554)
++.++|++.....+.+.++.. ... .+.++. .....+|+||| ++|++++++.|.+..
T Consensus 171 ~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 230 (352)
T TIGR02160 171 LAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGLG 230 (352)
T ss_pred EEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 888899864322222223211 101 111111 23468999999 899999999998753
No 51
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.86 E-value=5.4e-21 Score=187.91 Aligned_cols=185 Identities=18% Similarity=0.293 Sum_probs=130.5
Q ss_pred CChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEEE
Q 008757 316 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 391 (554)
Q Consensus 316 ~p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~~ 391 (554)
..+||++.+.+| ....|+|||+|.|.. .+.++|+|+.. ..|.+|.||++ +.+|+ .+.+..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~g 91 (231)
T cd06215 28 YKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWASG 91 (231)
T ss_pred cCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEc
Confidence 346666643333 123699999999863 45688877643 23889999974 55543 356777
Q ss_pred ecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEE
Q 008757 392 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 471 (554)
Q Consensus 392 ~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~ 471 (554)
+.|.|.++.....++||||+|||||||++++++....+ ...+++||||+|+++ |++|.++|+++.+.....++..
T Consensus 92 P~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 166 (231)
T cd06215 92 PAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR----PDADIVFIHSARSPA-DIIFADELEELARRHPNFRLHL 166 (231)
T ss_pred CcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEEE
Confidence 77889886554689999999999999999999986532 136799999999987 8999999999988655557788
Q ss_pred EEccCCCC-cccchhhhcccHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHH
Q 008757 472 AFSREGPT-KEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 472 a~Sr~~~~-~~yVqd~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+.+++... ..+.+.++.+ +.+.+.+. .+..+|+||| ++|++++.+.|.+.
T Consensus 167 ~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 219 (231)
T cd06215 167 ILEQPAPGAWGGYRGRLNA--ELLALLVPDLKERTVFVCGP-AGFMKAVKSLLAEL 219 (231)
T ss_pred EEccCCCCcccccCCcCCH--HHHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 88875431 1122222221 11222221 3468999999 89999999988653
No 52
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.85 E-value=2.6e-21 Score=192.05 Aligned_cols=172 Identities=20% Similarity=0.288 Sum_probs=127.1
Q ss_pred CChHHHHHHhcCC----CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEE
Q 008757 316 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 391 (554)
Q Consensus 316 ~p~~~ll~~~~p~----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~ 391 (554)
..+||++.+.+|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++.+|+ .+.+..
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i~g 86 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDVLG 86 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEEEe
Confidence 4467877554342 35799999998742 46788777543 77899999876654 366777
Q ss_pred ecCC-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEE
Q 008757 392 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 470 (554)
Q Consensus 392 ~~~~-F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~ 470 (554)
|.|. |.++. ...++||||+|||||||+|++++.... ..+++|||++|+.+ |.+|.++|++|.. ++.
T Consensus 87 P~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~------~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~ 153 (246)
T cd06218 87 PLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAER------GIKVTVLLGFRSAD-DLFLVEEFEALGA-----EVY 153 (246)
T ss_pred cCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhc------CCceEEEEEccchh-hhhhHHHHHhhCC-----cEE
Confidence 7775 77764 467999999999999999999987652 26899999999997 8999999998842 233
Q ss_pred EEEccCC--CCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008757 471 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 525 (554)
Q Consensus 471 ~a~Sr~~--~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 525 (554)
. ++++. ..++|+++.+.+... + ..+..||+||| +.|++++++.|.+..
T Consensus 154 ~-~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyiCGp-~~mv~~~~~~L~~~G 203 (246)
T cd06218 154 V-ATDDGSAGTKGFVTDLLKELLA---E--ARPDVVYACGP-EPMLKAVAELAAERG 203 (246)
T ss_pred E-EcCCCCCCcceehHHHHHHHhh---c--cCCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 2 23332 346788886655321 1 14789999999 899999999997753
No 53
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.85 E-value=3.7e-21 Score=190.37 Aligned_cols=187 Identities=22% Similarity=0.363 Sum_probs=131.9
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhh-ccCCCCcCCCCceeeEE
Q 008757 315 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 390 (554)
Q Consensus 315 ~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~~~~~~~~~~~~v~ 390 (554)
...+||++...+|. ..+|+|||+|.|.. +.++|+|+.+ ..|.+|.||+ ++.+++ .+.+.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEe
Confidence 45678888554441 35799999998863 3688777644 2488999998 455543 35677
Q ss_pred EecCCCCCCCC-CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCC-cCe
Q 008757 391 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 468 (554)
Q Consensus 391 ~~~~~F~lp~~-~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~ 468 (554)
.+.|.|.++++ ...++||||+|||||||+++++++.... ..++++|+||+|+.+ |++|.++|+++.+... ..+
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE----PASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 77788988765 5689999999999999999999976532 136899999999987 8999999999976643 446
Q ss_pred EEEEEccCCCCcccchhhhccc-HHHHH-HHH--hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 469 LIVAFSREGPTKEYVQHKMMEK-SSDIW-NML--SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 469 l~~a~Sr~~~~~~yVqd~l~~~-~~~v~-~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+..++|+++....+...++.+. ..... +++ .++..||+||| +.|++.+.+.|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 6777887543221112222211 00111 111 24589999999 89999999988763
No 54
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.85 E-value=6.3e-21 Score=185.84 Aligned_cols=177 Identities=19% Similarity=0.282 Sum_probs=127.5
Q ss_pred CCChHHHHHHhcCC----CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEE
Q 008757 315 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 390 (554)
Q Consensus 315 ~~p~~~ll~~~~p~----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~ 390 (554)
...+||++...++. ...|+|||+|+|. .+.++|+|+.+ + ..|..|.||+++.+|+ .+.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~----~----~~g~~s~~l~~l~~G~------~v~i~ 90 (218)
T cd06196 27 DFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSY----P----DHDGVTEQLGRLQPGD------TLLIE 90 (218)
T ss_pred CCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEc----C----CCCcHhHHHHhCCCCC------EEEEE
Confidence 34567776433331 3579999999986 36788877653 1 1256799999887654 35677
Q ss_pred EecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEE
Q 008757 391 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 470 (554)
Q Consensus 391 ~~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~ 470 (554)
.|.|.|.++ .|+||||+|||||||+|+++++.... ...+++|+||+|+.+ |++|.+||++|.. .++.
T Consensus 91 gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~ 157 (218)
T cd06196 91 DPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKG----KLEGNTLIFANKTEK-DIILKDELEKMLG----LKFI 157 (218)
T ss_pred CCccceEec----CceEEEecCCCcChHHHHHHHHHhCC----CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceEE
Confidence 777888653 57999999999999999999987532 135799999999987 9999999999853 2567
Q ss_pred EEEccCCCCcccchhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 471 VAFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 471 ~a~Sr~~~~~~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
.++||+.. ..|.+.++.+ +.+.+++ ..++.+|+||| ++|++++.+.|.+.
T Consensus 158 ~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 158 NVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred EEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 78888643 3455555432 2233333 23579999999 89999999988764
No 55
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.85 E-value=2.1e-21 Score=188.91 Aligned_cols=178 Identities=21% Similarity=0.289 Sum_probs=128.3
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhh-ccCCCCcCCCCceeeEE
Q 008757 315 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 390 (554)
Q Consensus 315 ~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~~~~~~~~~~~~v~ 390 (554)
...+||++.+-++. ...|+|||+|.|.. .+.++|+|+.+ |.+|.+|. ++.+|+ .+.+.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~-----------G~~t~~l~~~l~~G~------~v~i~ 83 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKAL-----------GDYTRRLAERLKPGT------RVTVE 83 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeC-----------ChHHHHHHHhCCCCC------EEEEE
Confidence 34578887544442 46899999998863 36888877632 77899999 565543 35677
Q ss_pred EecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEE
Q 008757 391 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 470 (554)
Q Consensus 391 ~~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~ 470 (554)
.|.|.|.++.. .++++|||+||||||+++++++..... ..++++|+||+|+.+ |.+|.++|+++.+.. ..+++
T Consensus 84 gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~ 156 (216)
T cd06198 84 GPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG----DARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLH 156 (216)
T ss_pred CCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC----CCceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEE
Confidence 77888988765 688999999999999999999986532 136899999999997 899999999998776 44566
Q ss_pred EEEccCCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 471 VAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 471 ~a~Sr~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
...++... .......+.+ ... ...+..+|+||| +.|++++++.|.+.
T Consensus 157 ~~~~~~~~-~~~~~~~~~~----~~~-~~~~~~vyicGp-~~m~~~v~~~l~~~ 203 (216)
T cd06198 157 VIDSPSDG-RLTLEQLVRA----LVP-DLADADVWFCGP-PGMADALEKGLRAL 203 (216)
T ss_pred EEeCCCCc-ccchhhhhhh----cCC-CcCCCeEEEECc-HHHHHHHHHHHHHc
Confidence 66554322 1111111100 000 124689999999 89999999998764
No 56
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.85 E-value=2.2e-21 Score=194.44 Aligned_cols=177 Identities=19% Similarity=0.247 Sum_probs=128.6
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCC
Q 008757 316 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 395 (554)
Q Consensus 316 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~ 395 (554)
.-+|||+.+-+|...+|+|||++.+ .+.++|+|+.+ |.+|+||+++.+|+ .+.+..+.|.
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~~-----------G~~S~~L~~l~~Gd------~v~v~gP~G~ 92 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRRV-----------GKVTDEIFNLKEGD------KLFLRGPYGN 92 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEeC-----------CchhhHHHhCCCCC------EEEEECCCCC
Confidence 3478887654565567999999975 36788777532 88999999876654 3556666666
Q ss_pred -CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEc
Q 008757 396 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 474 (554)
Q Consensus 396 -F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 474 (554)
|.++....+|+||||+|||||||+|++++..... ...++++||||+|+.+ |.+|.+||++|.+.. .++.+++
T Consensus 93 ~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~---~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~ 165 (263)
T PRK08221 93 GFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENP---QEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLD 165 (263)
T ss_pred CcccCccCCccEEEEcccccHHHHHHHHHHHHhCc---ccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEec
Confidence 8876655679999999999999999999976432 1235899999999997 999999999998753 2455566
Q ss_pred cCCC----CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 475 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 475 r~~~----~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+... ..+++++.+.+.. +.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~~--~~~--~~~~~vylCGp-~~mv~~~~~~L~~~ 214 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPELT--LKD--IDNMQVIVVGP-PIMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCCccCccccChhhHhcc--CCC--cCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 5322 3456654443210 000 14678999999 99999999998764
No 57
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.85 E-value=2.9e-21 Score=190.37 Aligned_cols=181 Identities=21% Similarity=0.341 Sum_probs=132.2
Q ss_pred CChHHHHHHhcC--CC--CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhc-cCCCCcCCCCceeeEE
Q 008757 316 PPLGVFFAAIVP--RL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 390 (554)
Q Consensus 316 ~p~~~ll~~~~p--~~--~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~~~~~~~~~~~~v~ 390 (554)
..+||++.+.+| .. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++ +.+|+ .+.+.
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd------~v~i~ 94 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD------LLEVR 94 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEe
Confidence 346888755443 22 2499999999863 36788887654 23889999987 44433 35677
Q ss_pred EecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEE
Q 008757 391 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 470 (554)
Q Consensus 391 ~~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~ 470 (554)
.|.|.|.++....++++|||+||||||+++++++..... ...+++|+||+|+.+ |.+|.+||.++.+.....+++
T Consensus 95 gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~ 169 (235)
T cd06217 95 GPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG----WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVT 169 (235)
T ss_pred CCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC----CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEE
Confidence 777888876544678999999999999999999986532 136899999999987 899999999998865555788
Q ss_pred EEEccCCC-----CcccchhhhcccHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 471 VAFSREGP-----TKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 471 ~a~Sr~~~-----~~~yVqd~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
.++||+.. .++++.+.+. .+.+ ..+..+||||| ++|++++.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~l------~~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADLI------AELVPPLAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHHH------HhhCCCccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 88888621 2344433221 1111 25689999999 89999999998764
No 58
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.85 E-value=8.7e-21 Score=194.52 Aligned_cols=167 Identities=12% Similarity=0.197 Sum_probs=118.3
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEEE
Q 008757 330 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 409 (554)
Q Consensus 330 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~piimI 409 (554)
..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+. +.+..+.+.|.++++..+|+|||
T Consensus 102 ~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~------v~v~GP~f~~~~~~~~~~~lvlI 165 (325)
T PTZ00274 102 CQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGDK------LLFRSVTFKIQYRPNRWKHVGMI 165 (325)
T ss_pred EEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCCE------EEEeCCeeecccCCCCCceEEEE
Confidence 3599999999863 46888888754 34899999998766543 44443333444444445789999
Q ss_pred ccCCccchhHHHHHHHHHHHhh--cCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCC-cCeEEEEEccCCC------Cc
Q 008757 410 GPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP------TK 480 (554)
Q Consensus 410 a~GtGIAPf~s~l~~~~~~~~~--~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~l~~a~Sr~~~------~~ 480 (554)
|+|||||||+||+++....... ..+..+++|+||+|+.+ |.+|.+||+++++... .++++.+.|++.. ..
T Consensus 166 AGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~ 244 (325)
T PTZ00274 166 AGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFL 244 (325)
T ss_pred eCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCC
Confidence 9999999999999987654211 11235899999999987 9999999999987654 4578888886421 24
Q ss_pred ccchhhhcccHHHHHHHHh----CCCEEEEecCCcchHHHHHHH
Q 008757 481 EYVQHKMMEKSSDIWNMLS----EGAYLYVCGDAKSMARDVHRT 520 (554)
Q Consensus 481 ~yVqd~l~~~~~~v~~~l~----~~~~iyvCG~~~~M~~~v~~~ 520 (554)
++|.+.+.. +.+. .+..+|+||| ++|++.|...
T Consensus 245 G~V~~~ll~------~~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 245 GYVTKEMVR------RTMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred CccCHHHHH------HhcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 555544321 1121 2357999999 8999999654
No 59
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.84 E-value=5.6e-21 Score=188.02 Aligned_cols=182 Identities=19% Similarity=0.287 Sum_probs=133.7
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEE
Q 008757 315 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 391 (554)
Q Consensus 315 ~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~ 391 (554)
...+||++.+.+|. ...|+|||+|++.. .+.++|+|+.+ ..|.+|.||+++.+|+ .+.+..
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~---------~~G~~s~~l~~~~~G~------~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIY---------PGGKMSQYLHSLKPGD------TVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEEC---------CCCcchhHHhcCCCCC------EEEEEC
Confidence 44678887554453 45799999998863 45788777643 2488999999876643 356777
Q ss_pred ecCCCCCCCCCC-CCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcC-CcCeE
Q 008757 392 RQSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 469 (554)
Q Consensus 392 ~~~~F~lp~~~~-~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~-~~~~l 469 (554)
+.|.|.+..+.. .++||||+||||||+++++++..... ....+++|+||+|+.+ +.+|.+||+++.+.. ...++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~---~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP---EDKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc---CcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 778898865554 78999999999999999999986532 1136899999999987 899999999998762 34467
Q ss_pred EEEEccCCC----CcccchhhhcccHHHHHHHHh----CCCEEEEecCCcchHH-HHHHHHHH
Q 008757 470 IVAFSREGP----TKEYVQHKMMEKSSDIWNMLS----EGAYLYVCGDAKSMAR-DVHRTLHT 523 (554)
Q Consensus 470 ~~a~Sr~~~----~~~yVqd~l~~~~~~v~~~l~----~~~~iyvCG~~~~M~~-~v~~~L~~ 523 (554)
+.++|+... ..+++++.+.+ ..+. .+..+|+||| +.|++ ++++.|.+
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~ 223 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEMIK------EHLPPPPSEDTLVLVCGP-PPMIEGAVKGLLKE 223 (234)
T ss_pred EEEEcCCCcCCccccceECHHHHH------HhCCCCCCCCeEEEEECC-HHHHHHHHHHHHHH
Confidence 777887532 24566543322 1221 4578999999 89999 99998865
No 60
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.84 E-value=9.5e-21 Score=188.57 Aligned_cols=180 Identities=19% Similarity=0.323 Sum_probs=127.9
Q ss_pred CChHHHHHHhcCCC---CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEe
Q 008757 316 PPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 316 ~p~~~ll~~~~p~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~ 392 (554)
..+||++..-++.- ..|.|||+|+|.. ++.+.|+|++. ..|..|+||++....|+ .+.+..+
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd-----~l~v~~P 99 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRE---------DGGGGSNWLHDHLKVGD-----TLEVSAP 99 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEe---------CCCcccHHHHhcCCCCC-----EEEEecC
Confidence 35678775544433 5799999999974 35677777643 22889999994444333 3677777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcC-eEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLIV 471 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~-~l~~ 471 (554)
.|.|.++.....|++|||+|+|||||+||++.....+ . .++.|+|++|+++ +..|+|| +.+....... .+..
T Consensus 100 ~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~~ 172 (266)
T COG1018 100 AGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLGL 172 (266)
T ss_pred CCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEEE
Confidence 8999998766779999999999999999999976542 2 6899999999997 9999999 8887765542 3333
Q ss_pred EEccCCCCcccch-hhhcccHHHHHHHHhCC-CEEEEecCCcchHHHHHHHHHHHHH
Q 008757 472 AFSREGPTKEYVQ-HKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQ 526 (554)
Q Consensus 472 a~Sr~~~~~~yVq-d~l~~~~~~v~~~l~~~-~~iyvCG~~~~M~~~v~~~L~~i~~ 526 (554)
.+++ ....+|.. .++. ..+... ..+|+||| .+|+++|+..|.++..
T Consensus 173 ~~~~-~~~~g~~~~~~l~-------~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g~ 220 (266)
T COG1018 173 YTER-GKLQGRIDVSRLL-------SAAPDGGREVYLCGP-GPFMQAVRLALEALGV 220 (266)
T ss_pred EEec-CCccccccHHHHh-------ccCCCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 3332 11222222 1121 122223 89999999 8999999999977654
No 61
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.84 E-value=7.7e-21 Score=190.23 Aligned_cols=177 Identities=17% Similarity=0.211 Sum_probs=127.8
Q ss_pred CChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCC
Q 008757 316 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 395 (554)
Q Consensus 316 ~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~ 395 (554)
.-+||++.+.+|...+|+|||+|.+ .+.++|+|+.+ |.+|++|+++.+|+ .+.+..+.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~~-----------G~~S~~L~~l~~Gd------~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRRV-----------GKVTDEVFTLKEGD------NLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEeC-----------chhhHHHHcCCCCC------EEEEecCCCC
Confidence 4578887655566678999999853 46788877532 88999999876644 3567777676
Q ss_pred -CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEc
Q 008757 396 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 474 (554)
Q Consensus 396 -F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 474 (554)
|.++....+|++|||+||||||++|++++..... ....+++||||+|+.+ |++|.+||++|++.. .+...++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~---~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNP---KEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHhCc---ccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 8777655689999999999999999999875431 1235899999999987 999999999998753 2344455
Q ss_pred cCCC----CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 475 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 475 r~~~----~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+..+ ..+++++.+.+.. +.+ ..+..+|+||| +.|++++++.|.+.
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHc
Confidence 4321 3455655443210 001 13578999999 99999999988774
No 62
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.83 E-value=2.3e-20 Score=180.88 Aligned_cols=174 Identities=20% Similarity=0.287 Sum_probs=125.6
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecC
Q 008757 315 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 394 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~ 394 (554)
...+||++.+-+|....|+|||+|.|.. .+.++|+|+.+ +. .+.+|.||++..+.++ .+.+..+.|
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~----~~----g~~~s~~l~~~~~~Gd-----~v~i~gP~g 90 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLRE----PA----SRGGSRYMHELLRVGD-----ELEVSAPRN 90 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEec----cC----CCchHHHHHhcCCCCC-----EEEEcCCcc
Confidence 4557888865545567899999999863 47788877643 11 1347999986544333 366777788
Q ss_pred CCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEc
Q 008757 395 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 474 (554)
Q Consensus 395 ~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 474 (554)
.|.++++ .+|+||||+||||||+++++++.... ..+++|+||+|+.+ |.+|.++|+++. . . .+.+.++
T Consensus 91 ~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~------~~~v~l~~~~r~~~-~~~~~~~l~~~~-~-~--~~~~~~~ 158 (211)
T cd06185 91 LFPLDEA-ARRHLLIAGGIGITPILSMARALAAR------GADFELHYAGRSRE-DAAFLDELAALP-G-D--RVHLHFD 158 (211)
T ss_pred CCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhC------CCCEEEEEEeCCCc-chhHHHHHhhhc-C-C--cEEEEEC
Confidence 8988654 57899999999999999999987542 25799999999987 888999999987 2 2 3445566
Q ss_pred cCCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 475 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 475 r~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+.. ...++++.+.. +..+..+|+||| +.|++++++.|.+.
T Consensus 159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~ 198 (211)
T cd06185 159 DEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAAL 198 (211)
T ss_pred CCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 533 23333333322 124689999999 89999999998774
No 63
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.83 E-value=5.9e-20 Score=187.36 Aligned_cols=179 Identities=15% Similarity=0.218 Sum_probs=122.0
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCCC--------
Q 008757 330 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD-------- 401 (554)
Q Consensus 330 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~~-------- 401 (554)
..|+||++|+|. ..+.++|+|+.+...........|.+|+||+++.+|+ .+.+..+.|.|.+..+
T Consensus 85 ~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~~~~~~~~~~~~~ 157 (300)
T PTZ00319 85 VQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------KIEMRGPVGKFEYLGNGTYTVHKG 157 (300)
T ss_pred EEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------EEEEEccceeeEecCCcceeeccc
Confidence 469999999885 3577888887652110000112488999998776654 3567777787755321
Q ss_pred -------CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEc
Q 008757 402 -------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 474 (554)
Q Consensus 402 -------~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 474 (554)
...|++|||+|||||||++++++..... .+..+++|+||+|+.+ |.+|.++|+++.+.. ..+++.+.+
T Consensus 158 ~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~---~~~~~i~liyg~r~~~-dl~~~~eL~~~~~~~-~~~~~~~~~ 232 (300)
T PTZ00319 158 KGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNK---EDRTKVFLVYANQTED-DILLRKELDEAAKDP-RFHVWYTLD 232 (300)
T ss_pred cccccccccceEEEEecCcccCHHHHHHHHHHhCC---CCCceEEEEEecCCHH-HhhHHHHHHHHhhCC-CEEEEEEEC
Confidence 1257999999999999999999876531 1235799999999987 999999999965443 447888888
Q ss_pred cCCC-----CcccchhhhcccHHHHHHHHh------CCCEEEEecCCcchHH-HHHHHHHHH
Q 008757 475 REGP-----TKEYVQHKMMEKSSDIWNMLS------EGAYLYVCGDAKSMAR-DVHRTLHTI 524 (554)
Q Consensus 475 r~~~-----~~~yVqd~l~~~~~~v~~~l~------~~~~iyvCG~~~~M~~-~v~~~L~~i 524 (554)
++.. ..++|+..+.+.. + .... .+..+|+||| ++|++ .+.+.|.+.
T Consensus 233 ~~~~~~~~~~~G~v~~~~l~~~--~-~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 233 REATPEWKYGTGYVDEEMLRAH--L-PVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNLEKI 290 (300)
T ss_pred CCCCCCcccccceeCHHHHHhh--c-CCccccccccCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 7422 3466665433221 0 0001 3478999999 89988 567777653
No 64
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.82 E-value=2.1e-20 Score=182.41 Aligned_cols=147 Identities=19% Similarity=0.305 Sum_probs=107.9
Q ss_pred CcccccCCCCCCCC--CeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCC---CCCCC
Q 008757 331 PRYYSISSSPRVAP--SRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVP 405 (554)
Q Consensus 331 pR~YSIaSsp~~~~--~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~---~~~~p 405 (554)
.|+|||||+|...+ +.++|+|+.+ |.+|+||.+...... ..+..+.+..+.|.|.++. +..++
T Consensus 60 ~R~ySias~p~~~~~~~~l~l~vk~~-----------G~~T~~L~~~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 60 VRTFTVSSAPPHDPATDEFEITVRKK-----------GPVTGFLFQVARRLR-EQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred eeeEEeecCCccCCCCCEEEEEEEeC-----------CCCCHHHHHhhhccc-CCCceEEEEecCCcccCCcccccCCce
Confidence 49999999996432 6788776532 889999998754210 0123467888889998875 34578
Q ss_pred eEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCCcccchh
Q 008757 406 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQH 485 (554)
Q Consensus 406 iimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~~~yVqd 485 (554)
+||||+|||||||++++++..... ....+++|+||+|+.+ |.+|.+||.++... ...... ++
T Consensus 128 illIagG~GItP~~sil~~l~~~~---~~~~~v~l~~~~r~~~-~~~~~~el~~~~~~--~~~~~~-~~----------- 189 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSR---NTTWDITLLWSLREDD-LPLVMDTLVRFPGL--PVSTTL-FI----------- 189 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhcc---cCCCcEEEEEEecchh-hHHHHHHHHhccCC--ceEEEE-EE-----------
Confidence 999999999999999999876432 1236899999999987 99999999876531 111111 11
Q ss_pred hhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 008757 486 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 523 (554)
Q Consensus 486 ~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 523 (554)
.+.||+||| ++|+++|.+.+.+
T Consensus 190 ---------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 190 ---------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred ---------------eccEEEECc-HHHHHHHHHHhhh
Confidence 117999999 8999999998775
No 65
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.82 E-value=7e-20 Score=182.06 Aligned_cols=179 Identities=22% Similarity=0.307 Sum_probs=140.1
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecC
Q 008757 315 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 394 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~ 394 (554)
...+|||+...+|....|+|||||.+.. .+.++|.+.+. ..|.+|.+++.+.+++. +.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd~------i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGDK------IRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCCE------EEEEcCCC
Confidence 4678999877778889999999999863 46666666554 23999999999876543 56777878
Q ss_pred CCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEc
Q 008757 395 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 474 (554)
Q Consensus 395 ~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~S 474 (554)
++.+.++..+|+++||+|||+||+++++++.... + ...+++++||.|++. |.++.+|++++... +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~---~-~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEK---G-DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHhc---C-CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 8777666678899999999999999999998753 2 347899999999997 99999999999875 3555554
Q ss_pred -cCCCCcccc-hhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008757 475 -REGPTKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 525 (554)
Q Consensus 475 -r~~~~~~yV-qd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 525 (554)
.....+++| ++.+.+... .+...+|+||| +.|++.+.+.+.+..
T Consensus 170 ~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 170 DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 233468888 666655311 14689999999 999999999888754
No 66
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.82 E-value=3.5e-20 Score=184.53 Aligned_cols=167 Identities=23% Similarity=0.306 Sum_probs=124.3
Q ss_pred CCChHHHHHHhcCCC---CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEE
Q 008757 315 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 391 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~ 391 (554)
...+||++...+|.. .+|+|||+|+| .+.++|+|+.+ |..|.||.++.+|+ .+.|..
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~-----------G~~t~~l~~l~~G~------~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKV-----------GEGTKKLSKLKEGD------ELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEc-----------ChHHHHHhcCCCCC------EEEEEc
Confidence 345788875443433 58999999988 46788877642 78899999876643 356777
Q ss_pred ecCC-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEE
Q 008757 392 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 470 (554)
Q Consensus 392 ~~~~-F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~ 470 (554)
|.|. |.++. ..+|+||||+||||||+++++++..... .+++|+|++|+.+ |++|.++|+++.+ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 7665 88764 4579999999999999999999986421 4799999999987 9999999998431 22
Q ss_pred EEEccCC--CCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 471 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 471 ~a~Sr~~--~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
.. +++. ..++||++.+.+.. .....||+||| +.|++++.+.|.+.
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~ 203 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEK 203 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 22 2222 24678887765431 24568999999 99999999998874
No 67
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.81 E-value=7.4e-20 Score=180.23 Aligned_cols=166 Identities=22% Similarity=0.276 Sum_probs=121.5
Q ss_pred CCChHHHHHHhcCCCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecC
Q 008757 315 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 394 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~ 394 (554)
..-+||++...+|....|+|||+|+| +.++|+|+. .|.+|+||+++.+|+ .+.+..|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCC
Confidence 44578888654455567999999987 567777653 288999999865543 356777767
Q ss_pred C-CCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 395 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 395 ~-F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
. |.++ .+|+||||+|||||||++++++.... ++++|+||+|+++ |.+|.+||+++ . ++....
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 6 8775 57899999999999999999987642 5899999999987 99999999972 1 222222
Q ss_pred cc-CCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008757 474 SR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 525 (554)
Q Consensus 474 Sr-~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 525 (554)
+. +....+++++.+.+.. ......||+||| ++|++++.+.|.+..
T Consensus 145 ~~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~g 190 (233)
T cd06220 145 DDGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDERG 190 (233)
T ss_pred eCCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 21 1224567776554321 124568999999 899999999997643
No 68
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.80 E-value=1.3e-19 Score=173.63 Aligned_cols=186 Identities=19% Similarity=0.336 Sum_probs=143.1
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEEE
Q 008757 330 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 409 (554)
Q Consensus 330 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~piimI 409 (554)
.-|.||+||-|.. .+.|-+-|++..-+........|.||+|+.++.+|+. +.|++|.|.|... +.++|+|+|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDK------vtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDK------VTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCe------EEEeccchhhhhc-cCCCceEEE
Confidence 3589999999974 3566666655422222335678999999999999764 5788888888765 457899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCC------cccc
Q 008757 410 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYV 483 (554)
Q Consensus 410 a~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~------~~yV 483 (554)
++|.|.||+||-+-+.+.+.+. .+++.+.||+|+.. +.+|.++.++++++.++++.++++|.+.++ .+++
T Consensus 282 gGGAGmapmRSHIfDqL~rlhS---kRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLHS---KRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhcc---cceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 9999999999999887765432 47999999999987 899999999999999999999999987543 3455
Q ss_pred hhhhcccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCC
Q 008757 484 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 530 (554)
Q Consensus 484 qd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~ 530 (554)
...+.+. .+.++- .++..+|+||| +-|..+|...|.+.+.+..+
T Consensus 358 hnv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~en 402 (410)
T COG2871 358 HNVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVEREN 402 (410)
T ss_pred HHHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCccccc
Confidence 5554443 122211 46899999999 89999999999988766543
No 69
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.80 E-value=1.7e-19 Score=178.87 Aligned_cols=172 Identities=15% Similarity=0.087 Sum_probs=121.9
Q ss_pred CChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEe
Q 008757 316 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 316 ~p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~ 392 (554)
..+||++...+| ....|+|||+|.|.. .+.++|+|+.+ |..|.||.++.+|+ .+.|..|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~-----------G~~t~~l~~~~~G~------~l~i~gP 86 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIR-----------GPKTKLIAELKPGE------KLDVMGP 86 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEc-----------CchHHHHHhCCCCC------EEEEEcc
Confidence 446787754443 345799999999753 46788776532 78899998876654 3567777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.+..+..++++|||+|||||||++++++.... ..+++|+||+|+.+ |.+|.+||+++. . .+ ..
T Consensus 87 ~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~------~~~v~l~~~~r~~~-d~~~~~el~~~~----~-~~-~~ 153 (243)
T cd06192 87 LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN------GNKVTVLAGAKKAK-EEFLDEYFELPA----D-VE-IW 153 (243)
T ss_pred CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC------CCeEEEEEecCcHH-HHHHHHHHHhhc----C-eE-EE
Confidence 777665544467899999999999999999997642 15899999999987 899999998872 1 12 22
Q ss_pred EccCC--CCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 008757 473 FSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 525 (554)
Q Consensus 473 ~Sr~~--~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~ 525 (554)
.+++. ...+++++... ... ...+..+|+||| +.|++++++.|.+..
T Consensus 154 ~~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 154 TTDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 23332 23455554311 111 123568999999 899999999998864
No 70
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.80 E-value=1.4e-19 Score=180.00 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=121.3
Q ss_pred CCChHHHHHHhcC-CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCcee-eEEEe
Q 008757 315 KPPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVR 392 (554)
Q Consensus 315 ~~p~~~ll~~~~p-~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~-~v~~~ 392 (554)
...+|||+.+-++ ....|+|||+|+|.. .+.++|+|+.+ |..|.+|.++.+|+ .+ .+..|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~~-----------G~~t~~l~~l~~G~------~v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQVV-----------GKSTRELATLEEGD------KIHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEeC-----------CchHHHHHhcCCCC------EeeeeecC
Confidence 3457888744333 235699999998742 46788777532 77899998876643 24 46677
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|.+..+ .+|+||||+||||||+++++++....+ .+++|+||+|+.+ |++|.+||+++.++ ++.+
T Consensus 88 ~G~~~~~~~-~~~~lliagG~GiaP~~~~l~~~~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIEN-YGTVVFVGGGVGIAPIYPIAKALKEAG------NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecCC-CCeEEEEeCcccHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 777765433 578999999999999999999966421 5799999999997 99999999999642 2222
Q ss_pred EccCC--CCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 008757 473 FSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 523 (554)
Q Consensus 473 ~Sr~~--~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 523 (554)
+++. ...+|+++.+.+. +.+ ......||+||| ++|++.+.+.|.+
T Consensus 155 -~~~~~~~~~g~v~~~l~~~---~~~-~~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKEL---IES-GEKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred -eCCCCCCccccchHHHHHH---Hhc-cCCccEEEEECC-HHHHHHHHHHHHH
Confidence 3332 2456776654332 111 123468999999 8999999998865
No 71
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.79 E-value=1.2e-19 Score=183.58 Aligned_cols=172 Identities=16% Similarity=0.164 Sum_probs=122.1
Q ss_pred CChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCcee-eEEEec
Q 008757 316 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 393 (554)
Q Consensus 316 ~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~-~v~~~~ 393 (554)
.-+|||+..-++.. ..|+|||+|++.. .+.++|+|+.+ |..|.+|+++.+|+ .+ .|..|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~~-----------G~~T~~L~~l~~Gd------~v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQAV-----------GKSTRKLAELKEGD------SILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEeC-----------CcHHHHHhcCCCCC------EEeeEEcCC
Confidence 34788875433432 3589999997642 46788877643 88899999876654 35 477777
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 394 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 394 ~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
|.|...++ .+|+||||+|+||||+++++++....+ .+++|+||+|+++ |.+|.+||+++... +++ .
T Consensus 90 G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKEAG------NKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHHCC------CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 77654433 578999999999999999999875421 4799999999997 99999999987642 222 2
Q ss_pred ccCC--CCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 474 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 474 Sr~~--~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+.+. ..+++|++.+.+. +.+ ......||+||| ++|++++.+.+.+.
T Consensus 156 ~~d~~~g~~G~v~~~l~~~---~~~-~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKEL---LES-GKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred cCCCCcCcccchHHHHHHH---hhc-CCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 3322 2456777655432 111 111467999999 99999999988664
No 72
>PRK05802 hypothetical protein; Provisional
Probab=99.77 E-value=3.5e-19 Score=182.72 Aligned_cols=169 Identities=11% Similarity=0.075 Sum_probs=118.3
Q ss_pred ChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEec
Q 008757 317 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 393 (554)
Q Consensus 317 p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~ 393 (554)
-+|||+..-++ +...|+|||+|+|.. .+.++|+|+.+ |..|.+|+++.+|+ .+.|..|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~~-----------G~~T~~L~~l~~Gd------~l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEIR-----------GVKTKKIAKLNKGD------EILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEec-----------ChhHHHHhcCCCCC------EEEEeCCC
Confidence 46777744333 223599999999853 47788877653 88999999876654 35566664
Q ss_pred --CCCCCC---CCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCe
Q 008757 394 --SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 468 (554)
Q Consensus 394 --~~F~lp---~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~ 468 (554)
|.|.++ ....+++|+||+|+||||+++++++....+ .+++|+||+|+++ |.+|.++|+++......
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~-- 228 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIE-- 228 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEE--
Confidence 446653 233568999999999999999999886532 4799999999987 89999999998653221
Q ss_pred EEEEEccCCC----CcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 469 LIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 469 l~~a~Sr~~~----~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
..+..++. .+++|++.+.+. +...||+||| ..|++.|.+.+.++
T Consensus 229 --~~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 229 --LNLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred --EEecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 11111211 133444444321 2368999999 99999999998774
No 73
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.75 E-value=1e-17 Score=165.82 Aligned_cols=181 Identities=15% Similarity=0.239 Sum_probs=133.5
Q ss_pred CChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEe
Q 008757 316 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 316 ~p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~ 392 (554)
.|.|+.+....| ..--|+||-.|++.. .+.+++.|+.. ..|.+|.||.++..|+ .+.+.+|
T Consensus 82 lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd------~ve~rGP 145 (286)
T KOG0534|consen 82 LPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGD------TVEFRGP 145 (286)
T ss_pred cccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCC------EEEEecC
Confidence 355554433323 224699999998864 57888777644 2399999999998765 3567777
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCC-cCeEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIV 471 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~-~~~l~~ 471 (554)
.|.|.+.+...+.+.||||||||||+..++++..... .+..+++|+|++++.+ |.++++||+.++...+ .++++.
T Consensus 146 ~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~---~d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y 221 (286)
T KOG0534|consen 146 IGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDP---EDTTKISLLYANKTED-DILLREELEELASKYPERFKVWY 221 (286)
T ss_pred ccceEecCCCcceEEEEecccchhhHHHHHHHHhcCC---CCCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEE
Confidence 7888887666788999999999999999999988643 3357899999999997 9999999999998876 667788
Q ss_pred EEccCCC----CcccchhhhcccHHHHHHHH---hC-CCEEEEecCCcchHHH-HHHHHHH
Q 008757 472 AFSREGP----TKEYVQHKMMEKSSDIWNML---SE-GAYLYVCGDAKSMARD-VHRTLHT 523 (554)
Q Consensus 472 a~Sr~~~----~~~yVqd~l~~~~~~v~~~l---~~-~~~iyvCG~~~~M~~~-v~~~L~~ 523 (554)
+.++... ..+||...+. .+.+ .. ...++|||| ++|.+. +...|.+
T Consensus 222 ~v~~~~~~w~~~~g~It~~~i------~~~l~~~~~~~~~~liCGP-p~m~~~~~~~~le~ 275 (286)
T KOG0534|consen 222 VVDQPPEIWDGSVGFITKDLI------KEHLPPPKEGETLVLICGP-PPMINGAAQGNLEK 275 (286)
T ss_pred EEcCCcccccCccCccCHHHH------HhhCCCCCCCCeEEEEECC-HHHHhHHHHHHHHh
Confidence 8887652 4566664332 2233 22 478999999 899974 4444433
No 74
>PLN02252 nitrate reductase [NADPH]
Probab=99.75 E-value=4.4e-18 Score=194.11 Aligned_cols=189 Identities=15% Similarity=0.219 Sum_probs=131.2
Q ss_pred CChHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCC-CcccCccchhhhccCCCCcCCCCceeeEEE
Q 008757 316 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 391 (554)
Q Consensus 316 ~p~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~ 391 (554)
.++||++.+.++ ....|+|||+|++.. .+.++|+|+++.. .+.. ....|.+|.||.++.+|+. +.|..
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~-~~~~~~p~gG~~S~~L~~L~vGd~------V~V~G 736 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFK-NVHPKFPNGGLMSQYLDSLPIGDT------IDVKG 736 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEec-cccCccCCCCchhhHHhcCCCCCE------EEEec
Confidence 356776633222 124699999999863 4689988876522 1111 1134999999998766543 55665
Q ss_pred ecCCC--------CCCCC--CCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHH
Q 008757 392 RQSNF--------KLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFV 461 (554)
Q Consensus 392 ~~~~F--------~lp~~--~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~ 461 (554)
+.|.| .++.. ..++++|||+|||||||++++++..... .+..+++||||+|+.+ |++|++||++++
T Consensus 737 P~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~---~d~t~i~Liyg~Rt~~-Dil~~eEL~~la 812 (888)
T PLN02252 737 PLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDP---EDKTEMSLVYANRTED-DILLREELDRWA 812 (888)
T ss_pred CccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhcc---CCCCcEEEEEEECCHH-HhhHHHHHHHHH
Confidence 65554 44432 2478999999999999999999987532 2236899999999987 999999999998
Q ss_pred HcC-CcCeEEEEEccCC-C----CcccchhhhcccHHHHHHHH---hCCCEEEEecCCcchHHH-HHHHHHH
Q 008757 462 QSG-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNML---SEGAYLYVCGDAKSMARD-VHRTLHT 523 (554)
Q Consensus 462 ~~~-~~~~l~~a~Sr~~-~----~~~yVqd~l~~~~~~v~~~l---~~~~~iyvCG~~~~M~~~-v~~~L~~ 523 (554)
+.. ..++++.++|++. + .+++|++.+.+. .+ ..+..+|+||| ++|++. ++..|.+
T Consensus 813 ~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~------~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~ 877 (888)
T PLN02252 813 AEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE------HLPEGGDETLALMCGP-PPMIEFACQPNLEK 877 (888)
T ss_pred HhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH------hcccCCCCeEEEEeCC-HHHHHHHHHHHHHH
Confidence 765 3457888888743 1 346666544321 22 23578999999 899984 7777765
No 75
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.2e-17 Score=162.37 Aligned_cols=164 Identities=20% Similarity=0.321 Sum_probs=122.8
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeE
Q 008757 328 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 407 (554)
Q Consensus 328 ~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~pii 407 (554)
.+.|.+||||++.. ..+++++|+.. |..|.-|.+-.+.|+ .+.|.+|.|.|........ .|
T Consensus 259 ~~~~HPFTIa~s~~--~sel~FsIK~L-----------GD~Tk~l~dnLk~G~-----k~~vdGPYG~F~~~~g~~~-QV 319 (438)
T COG4097 259 RMRPHPFTIACSHE--GSELRFSIKAL-----------GDFTKTLKDNLKVGT-----KLEVDGPYGKFDFERGLNT-QV 319 (438)
T ss_pred cCCCCCeeeeeCCC--CceEEEEehhh-----------hhhhHHHHHhccCCc-----eEEEecCcceeecccCCcc-cE
Confidence 34599999999875 34788777644 889999998544443 4678888899988654333 89
Q ss_pred EEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCCcccchhh-
Q 008757 408 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK- 486 (554)
Q Consensus 408 mIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~~~yVqd~- 486 (554)
+||||+|||||+|+++.....+. ..+++|||.||+.+ +-+|.+||+++.+..+...++..-|. .++|+...
T Consensus 320 WIAGGIGITPFis~l~~l~~~~s----~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHiiDSs---~~g~l~~e~ 391 (438)
T COG4097 320 WIAGGIGITPFISMLFTLAERKS----DPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHIIDSS---KDGYLDQED 391 (438)
T ss_pred EEecCcCcchHHHHHHhhccccc----CCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEecCC---CCCccCHHH
Confidence 99999999999999999876332 36899999999987 89999999999997777677764443 45666432
Q ss_pred hcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 487 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 487 l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+.... + ......||+||| .+|++.++..|++.
T Consensus 392 ler~~----~-~~~~~sv~fCGP-~~m~dsL~r~l~~~ 423 (438)
T COG4097 392 LERYP----D-RPRTRSVFFCGP-IKMMDSLRRDLKKQ 423 (438)
T ss_pred hhccc----c-ccCcceEEEEcC-HHHHHHHHHHHHHc
Confidence 22210 1 022348999999 99999999988874
No 76
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.72 E-value=2.2e-17 Score=195.71 Aligned_cols=183 Identities=17% Similarity=0.289 Sum_probs=131.0
Q ss_pred CChHHHHHHhcC--C-CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEe
Q 008757 316 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 392 (554)
Q Consensus 316 ~p~~~ll~~~~p--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~ 392 (554)
..+|||+.+.++ . ...|+|||+|.|. ..+.++|+|+. ..|.+|+||+++.+|+. +.|..+
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr~----------~~G~~S~~L~~l~~Gd~------v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILARG----------DKGTLKEWISALRPGDS------VEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEEc----------CCChhHHHHhhCCCCCE------EEEeCC
Confidence 467888854332 1 1349999999996 34677776531 24889999988776543 445443
Q ss_pred cC----------CCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHH
Q 008757 393 QS----------NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 462 (554)
Q Consensus 393 ~~----------~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~ 462 (554)
.| .|.++....+|+||||+|||||||++|+++.....+ .....+++||||+|+.+ |.+|++||++|.+
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 22 466665566899999999999999999998765311 11236899999999987 9999999999987
Q ss_pred cCC-cCeEEEEEccCCC----CcccchhhhcccHHHHHHHH---hCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 463 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML---SEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 463 ~~~-~~~l~~a~Sr~~~----~~~yVqd~l~~~~~~v~~~l---~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
... .++++.++|++.+ ..++|++.+.+ +.+ ..+..+|+||| ++|++.+++.|.+.
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~------~~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQ------SALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHH------HhcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 654 3578888887532 34666654322 222 24578999999 89999999988764
No 77
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.71 E-value=7.2e-18 Score=153.19 Aligned_cols=91 Identities=38% Similarity=0.544 Sum_probs=81.2
Q ss_pred CeEEEEeccCCCCCcCchHH-HHHHHHhhc---cCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAA-RFYKWFTEK---EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 76 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~-~f~~~l~~~---~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~ 76 (554)
+.+||++||||+|+||+|+. .|++|+... .....+++++|||||+||+.|.+||.+++.++++|+++||+++.|++
T Consensus 47 ~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~ 126 (143)
T PF00258_consen 47 DLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLL 126 (143)
T ss_dssp SEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSE
T ss_pred ceeeEeecccCCCcchhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcE
Confidence 36899999999999999999 667777632 23456899999999999999999999999999999999999999999
Q ss_pred cccCCC--CcHhhHHHH
Q 008757 77 LGDDDQ--CIEDDFSAW 91 (554)
Q Consensus 77 ~~d~~~--~~~~~~~~W 91 (554)
++|+.. +.+++|++|
T Consensus 127 ~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 127 EIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp EEETTTHGGHHHHHHHH
T ss_pred EEecCCCcChHHHHhCC
Confidence 999977 789999999
No 78
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.70 E-value=2.5e-17 Score=142.22 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=80.2
Q ss_pred EEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCc-CeEEEEEccCCC----Cccc
Q 008757 408 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 482 (554)
Q Consensus 408 mIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~-~~l~~a~Sr~~~----~~~y 482 (554)
|||+|||||||+||+++..... ..++++||||+|+++ |++|.++|+++.+.... .+++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 7999999999999999988652 247999999999998 99999999999987654 233333 44322 4789
Q ss_pred chhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHH
Q 008757 483 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 519 (554)
Q Consensus 483 Vqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~ 519 (554)
|++.+.+.... ......++.||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99988654322 122257899999999 999999874
No 79
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.68 E-value=4.8e-17 Score=186.05 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=124.9
Q ss_pred CChHHHHHHhcCCC-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCcee-eEEEec
Q 008757 316 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 393 (554)
Q Consensus 316 ~p~~~ll~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~-~v~~~~ 393 (554)
.-+|||+.+.++.. ..|+|||+|.+.. .+.++|+|+.+ |..|.+|+++.+|+ .+ .|..|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~Gd------~v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEGD------YITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCCC------EeCeEeCCC
Confidence 45788885443432 3589999998753 46788887654 88999999876654 35 477787
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEE
Q 008757 394 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 473 (554)
Q Consensus 394 ~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~ 473 (554)
|.|.+... .++++|||+|+||||+++++++....+ .+++||||+|+.+ |++|.+||++|... ++++
T Consensus 90 G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 88776533 478999999999999999999876532 4799999999987 99999999988642 2222
Q ss_pred ccCC--CCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 474 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 474 Sr~~--~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+.++ ..+++|++.+.+.. ........||+||| ++|++.+.+.+.+.
T Consensus 156 t~dg~~g~~G~v~~~l~~~~----~~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEVI----KRETKVDKVFAIGP-AIMMKFVCLLTKKY 203 (752)
T ss_pred ECCCCCCCcccHHHHHHHHh----hcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 2332 25678887654421 10112357999999 99999999988653
No 80
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.65 E-value=3.4e-16 Score=151.52 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=112.0
Q ss_pred CCChHHHHHHhcCCC----CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEE
Q 008757 315 KPPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 390 (554)
Q Consensus 315 ~~p~~~ll~~~~p~~----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~ 390 (554)
...+||++.+-+|.. ..|+|||+|+|....+.++|+|+.. .|..|..+..+........+..+.+.
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~ 93 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVE 93 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEE
Confidence 445677765544543 6899999999863247788777532 27777777766420000112235566
Q ss_pred EecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCC-CCcHHHHHHHHHcCCcCeE
Q 008757 391 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQL 469 (554)
Q Consensus 391 ~~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d-~ly~del~~~~~~~~~~~l 469 (554)
+|.|.+..+.....++||||+||||||+++++++............++.|+|++|+.+ | ..|.++|.+..+.....++
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~ 172 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEI 172 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceE
Confidence 6667776443446789999999999999999999876432111236899999999987 6 4799999751111111022
Q ss_pred EEEEccCCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 008757 470 IVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 523 (554)
Q Consensus 470 ~~a~Sr~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 523 (554)
...+++ +|+||| .+|.++++....+
T Consensus 173 ~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 173 EIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 222332 999999 8999999988766
No 81
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.64 E-value=2e-16 Score=156.09 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=104.5
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeEEE
Q 008757 330 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 409 (554)
Q Consensus 330 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~piimI 409 (554)
..|+|||+|.+. ..++++|+|..+ + ..|.+|.||+++.+|+ .+.+..+.|.|.++. ..++++||
T Consensus 63 ~~R~YSi~~~~~-~~~~l~~~v~~~----~----~~G~~s~~l~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vli 126 (235)
T cd06193 63 VMRTYTVRRFDP-EAGELDIDFVLH----G----DEGPASRWAASAQPGD------TLGIAGPGGSFLPPP-DADWYLLA 126 (235)
T ss_pred cCcccceeEEcC-CCCEEEEEEEeC----C----CCCchHHHHhhCCCCC------EEEEECCCCCCCCCC-CcceEEEE
Confidence 459999999874 347788777543 1 1288999998876654 367777889998764 35789999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCCcccchhhhcc
Q 008757 410 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 489 (554)
Q Consensus 410 a~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~~~yVqd~l~~ 489 (554)
|+||||||+++++++.... .+++++||+|+++ |.++.+++ . ..+++.+.+++.. .......+..
T Consensus 127 a~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~~l~~~------~-~~~~~~~~~~~~~-~~~~~~~~~~ 190 (235)
T cd06193 127 GDETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQPLPAP------A-GVEVTWLHRGGAE-AGELALLAVR 190 (235)
T ss_pred eccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-HccccCCC------C-CcEEEEEeCCCCC-cchhHHHHHh
Confidence 9999999999999986421 5799999999985 54433322 1 2245555443322 1111100000
Q ss_pred cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 008757 490 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 523 (554)
Q Consensus 490 ~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 523 (554)
.+. ....+..+|+||| ++|++.+++.|.+
T Consensus 191 ---~~~-~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 191 ---ALA-PPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred ---ccc-CCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 000 0124579999999 8999999988765
No 82
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.62 E-value=1.7e-15 Score=175.21 Aligned_cols=179 Identities=14% Similarity=0.121 Sum_probs=121.2
Q ss_pred CChHHHHHHhcC-CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCcee-eEEEec
Q 008757 316 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 393 (554)
Q Consensus 316 ~p~~~ll~~~~p-~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~-~v~~~~ 393 (554)
..+|||+...++ +...|+|||+|.+.. .+.++|+|+.+ |..|.+|.++.+|+. + .|..|.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~------l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIGDA------FSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCcCE------EeeeecCC
Confidence 457898854322 233599999998642 46788877644 777888888766543 4 266777
Q ss_pred CCCC-CCC-CCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHH---HHHHHcCC-cC
Q 008757 394 SNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL---NNFVQSGA-LS 467 (554)
Q Consensus 394 ~~F~-lp~-~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del---~~~~~~~~-~~ 467 (554)
|.|. ++. ...+++||||+|+||||+++++++....+ .+++|+||+|+++ |.+|.+++ ++|++... ..
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 7764 433 22468999999999999999999875432 5799999999986 78877664 55655432 33
Q ss_pred eEEEEEccCC--CCcccchhhhcccHHHHHHHH--h--CCCEEEEecCCcchHHHHHHHHHHH
Q 008757 468 QLIVAFSREG--PTKEYVQHKMMEKSSDIWNML--S--EGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 468 ~l~~a~Sr~~--~~~~yVqd~l~~~~~~v~~~l--~--~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+++++ +.++ ..+++|++.+.+.. .+.. . ....||+||| ++|++.|.+.|.+.
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ll---~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~ 869 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEEML---KANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPY 869 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHHHH---HhcccccccCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 44433 3332 24678887654321 1110 0 1368999999 99999999988664
No 83
>PRK07308 flavodoxin; Validated
Probab=99.54 E-value=2.6e-14 Score=130.44 Aligned_cols=92 Identities=26% Similarity=0.269 Sum_probs=77.5
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
+.+||++||||+|++|+++..|+++|... .+++++|+|||+||+.|+.||.+++.++++|.++||+++.+..+.+.
T Consensus 50 d~vi~g~~t~g~G~~p~~~~~fl~~l~~~----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~ 125 (146)
T PRK07308 50 DIAIVATYTYGDGELPDEIVDFYEDLADL----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDL 125 (146)
T ss_pred CEEEEEeCccCCCCCCHHHHHHHHHHhcC----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeC
Confidence 46899999999999999999999999743 38899999999999999999999999999999999999998888776
Q ss_pred CCC--cHhhHHHHHHHHh
Q 008757 81 DQC--IEDDFSAWRELVW 96 (554)
Q Consensus 81 ~~~--~~~~~~~W~~~l~ 96 (554)
..+ .-+...+|.+.|.
T Consensus 126 ~p~~~~~~~~~~~~~~l~ 143 (146)
T PRK07308 126 AAEDEDIERLEAFAEELA 143 (146)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 532 2334556665553
No 84
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.53 E-value=1.5e-14 Score=168.89 Aligned_cols=171 Identities=15% Similarity=0.178 Sum_probs=117.8
Q ss_pred CChHHHHHHhcC-CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhh-ccCCCCcCCCCcee-eEEEe
Q 008757 316 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWA-PIFVR 392 (554)
Q Consensus 316 ~p~~~ll~~~~p-~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~~~~~~~~~~~-~v~~~ 392 (554)
.-+|||+...++ ....|+|||++.+. ..+.++|.|..+ |..|.||+ ++.+|+. + .+..|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~-~~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd~------l~~v~GP 89 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDR-KKGTITMVVQAL-----------GKTTREMMTKFKAGDT------FEDFVGP 89 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCC-CCCEEEEEEEec-----------CcHHHHHHhcCCCCCE------EeeeecC
Confidence 347888854333 23468999999764 246677666543 88899995 5655432 3 46666
Q ss_pred cCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEE
Q 008757 393 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 472 (554)
Q Consensus 393 ~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a 472 (554)
.|.|..... .+++||||+|+||||+++++++....+ .+++++||+|+++ +.+|.+||+++.. +++++
T Consensus 90 lG~~~~~~~-~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~-----~~~v~ 156 (1006)
T PRK12775 90 LGLPQHIDK-AGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCD-----DLIVC 156 (1006)
T ss_pred CCCCCCCCC-CCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcC-----cEEEE
Confidence 666543322 468999999999999999999865432 4699999999987 8999999987753 22222
Q ss_pred EccCC--CCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 008757 473 FSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 524 (554)
Q Consensus 473 ~Sr~~--~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 524 (554)
+.++ ..+++|++.+.+. ..- .....+|+||| +.|++.|.+.+.+.
T Consensus 157 -tddgs~G~~G~vt~~l~~~----l~~-~~~d~vy~CGP-~~Mm~av~~~~~~~ 203 (1006)
T PRK12775 157 -TDDGSYGKPGFVTAALKEV----CEK-DKPDLVVAIGP-LPMMNACVETTRPF 203 (1006)
T ss_pred -ECCCCCCCCCChHHHHHHH----hcc-CCCCEEEEECC-HHHHHHHHHHHHHC
Confidence 2332 2467888766542 110 12358999999 89999999988653
No 85
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.51 E-value=4.4e-14 Score=142.78 Aligned_cols=95 Identities=32% Similarity=0.558 Sum_probs=83.2
Q ss_pred eEEEEeccCCCCCcCchHHHHHHHHhhc-----cCCCccCCceeeEEeecCCCc-hHHHHHHHHHHHHHHHcCCcccccc
Q 008757 2 KIYVIGCRYGDGEPTDNAARFYKWFTEK-----EGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPV 75 (554)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~-----~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~L~~lGa~~~~~~ 75 (554)
.++|+++|+-+|+|| +.-|.+||+.. ....+|++++||||||||+.| ++||+.|+++|+++..|||.|++|+
T Consensus 94 ~~~~lv~~~~~~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~ 171 (601)
T KOG1160|consen 94 ALYFLVLPSYDIDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPL 171 (601)
T ss_pred eEEEEEecccCCCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeec
Confidence 478899999999999 88999999832 245679999999999999997 8999999999999999999999999
Q ss_pred ccccCCCCcHhhHHHHHHHHhHHHHh
Q 008757 76 GLGDDDQCIEDDFSAWRELVWPELDN 101 (554)
Q Consensus 76 ~~~d~~~~~~~~~~~W~~~l~~~l~~ 101 (554)
|++|.+ ...+++|...+...|..
T Consensus 172 G~~~~~---~~~id~W~~~~~~~Lk~ 194 (601)
T KOG1160|consen 172 GEVDMD---SAKIDEWTSLVAETLKD 194 (601)
T ss_pred Cccccc---cccHHHHHHHHHHHHcC
Confidence 999987 34466999999888764
No 86
>PRK12359 flavodoxin FldB; Provisional
Probab=99.41 E-value=1.1e-12 Score=121.96 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=78.6
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCC-Cc-hHHHHHHHHHHHHHHHcCCccc------
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRL------ 72 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~~~~~L~~lGa~~~------ 72 (554)
+.+||.+||||.|++|+++..|+..|.... |+|+++||||+||+ .| ++||.+++.++++|.+.||+.+
T Consensus 47 D~iIlG~pTw~~Gel~~d~~~~~~~l~~~d----l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~ 122 (172)
T PRK12359 47 DVLILGIPTWDFGEIQEDWEAVWDQLDDLN----LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTE 122 (172)
T ss_pred CEEEEEecccCCCcCcHHHHHHHHHHhhCC----CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCC
Confidence 469999999999999999999999887443 99999999999998 58 6899999999999999999766
Q ss_pred ----------cccc------cccCCC---CcHhhHHHHHHHHhHHHHh
Q 008757 73 ----------VPVG------LGDDDQ---CIEDDFSAWRELVWPELDN 101 (554)
Q Consensus 73 ----------~~~~------~~d~~~---~~~~~~~~W~~~l~~~l~~ 101 (554)
..-+ -.|+++ -+++.++.|+++|.+.+..
T Consensus 123 gY~f~~s~a~~~~~~~f~gl~lD~~nq~~~t~~ri~~W~~~~~~~~~~ 170 (172)
T PRK12359 123 GYEFTSSKPLTADGQLFVGLALDEVNQYDLSDERIQQWCEQILLEMAE 170 (172)
T ss_pred CcccccceeeEcCCCEEEEEEEcCCCchhhhHHHHHHHHHHHHHHHHh
Confidence 1000 123332 2678899999998877653
No 87
>PRK06703 flavodoxin; Provisional
Probab=99.41 E-value=1.3e-12 Score=119.78 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=80.4
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
+.|||++||||+|++|++++.|+++|... .+++++|+|||+||+.|++||.+++.++++|+++||+.+.+....+.
T Consensus 50 d~viigspt~~~g~~p~~~~~f~~~l~~~----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~ 125 (151)
T PRK06703 50 DGIILGSYTWGDGDLPYEAEDFHEDLENI----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIEL 125 (151)
T ss_pred CcEEEEECCCCCCcCcHHHHHHHHHHhcC----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEec
Confidence 46899999999999999999999999743 27899999999999999999999999999999999998887776655
Q ss_pred CCC---cHhhHHHHHHHHhHHHH
Q 008757 81 DQC---IEDDFSAWRELVWPELD 100 (554)
Q Consensus 81 ~~~---~~~~~~~W~~~l~~~l~ 100 (554)
..+ ..+.+.+|.+.+.+.+.
T Consensus 126 ~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 126 APETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred CCCchhHHHHHHHHHHHHHHHHH
Confidence 432 34467788888766544
No 88
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.40 E-value=6.8e-13 Score=147.82 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=117.7
Q ss_pred CCCChHHHHHHhcCCC---CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCC----CCc-CCCCc
Q 008757 314 AKPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----MEK-SNDCS 385 (554)
Q Consensus 314 ~~~p~~~ll~~~~p~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~----~~~-~~~~~ 385 (554)
.+..+||++..-+|.. +.|+|||+|+|..+++.++++|+.. |..|+.|.+... .+. .....
T Consensus 337 ~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~ 405 (722)
T PLN02844 337 LKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCI 405 (722)
T ss_pred CCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccce
Confidence 3445788775444543 5799999998864456777766532 444566654322 111 11112
Q ss_pred eeeEEEecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEcccCCCCCCCcHHHHHH-----
Q 008757 386 WAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNN----- 459 (554)
Q Consensus 386 ~~~v~~~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~del~~----- 459 (554)
.+.+..|.|.|.++....++++|||||||||||+|++++.....+. .....++.|+|++|+.+ |..|.+++..
T Consensus 406 ~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~ 484 (722)
T PLN02844 406 PVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQ 484 (722)
T ss_pred EEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHh
Confidence 3455666787766544457899999999999999999998753211 11235799999999997 9999998863
Q ss_pred HHHcCCcCeEEEEEccCCCCcccchhhhcccHHHHHHH-H-hCCCEEEEecCCcc
Q 008757 460 FVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNM-L-SEGAYLYVCGDAKS 512 (554)
Q Consensus 460 ~~~~~~~~~l~~a~Sr~~~~~~yVqd~l~~~~~~v~~~-l-~~~~~iyvCG~~~~ 512 (554)
+.+.. ..+++...+|+......+.+.+... +...++ + .+..++.+||+...
T Consensus 485 ~~~~~-~lkl~iyVTRE~~~~~rl~~~i~~~-~~~~~~~~~~~~~~~~i~G~~~~ 537 (722)
T PLN02844 485 SSNQL-NLKLKVFVTQEEKPNATLRELLNQF-SQVQTVNFSTKCSRYAIHGLESF 537 (722)
T ss_pred HHHhc-CceEEEEECCCCCCCCchhhHhhcc-chhhhcCCCCCCCceEEeCCCch
Confidence 22222 3367777899876555566655441 111221 2 45678999999533
No 89
>PLN02292 ferric-chelate reductase
Probab=99.39 E-value=2.5e-12 Score=142.92 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=112.7
Q ss_pred ChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEec
Q 008757 317 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 393 (554)
Q Consensus 317 p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~ 393 (554)
.+||++-..+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+....++......+.+.+|.
T Consensus 353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGPY 421 (702)
T PLN02292 353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGPY 421 (702)
T ss_pred CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECCc
Confidence 356544333353 4679999999985445778877653 27789999887544332212234566666
Q ss_pred CCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEcccCCCCCCCcHHHHHH-------HHHcCC
Q 008757 394 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-------FVQSGA 465 (554)
Q Consensus 394 ~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~del~~-------~~~~~~ 465 (554)
|.+..+.....+++|||||+||||+++++++........ ....++.|+|++|+.+ |.++.+++.. +.+...
T Consensus 422 G~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~~~ 500 (702)
T PLN02292 422 GPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSFID 500 (702)
T ss_pred cCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhcCC
Confidence 776544334468999999999999999999986542111 1125899999999987 8887765442 223333
Q ss_pred cCeEEEEEccCCCCcc-cchhhhcccHHHHHHHH-----hCCCEEEEecCCc
Q 008757 466 LSQLIVAFSREGPTKE-YVQHKMMEKSSDIWNML-----SEGAYLYVCGDAK 511 (554)
Q Consensus 466 ~~~l~~a~Sr~~~~~~-yVqd~l~~~~~~v~~~l-----~~~~~iyvCG~~~ 511 (554)
+ ++...++|+.+.+. |-++ ..+.+.+.+ .+...+.+|||..
T Consensus 501 ~-~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~ 547 (702)
T PLN02292 501 I-QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNS 547 (702)
T ss_pred c-eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCc
Confidence 3 67777888754321 1111 223333332 2567899999943
No 90
>PLN02631 ferric-chelate reductase
Probab=99.35 E-value=1.6e-12 Score=144.18 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=104.2
Q ss_pred CCCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCC-CcCCCCceeeE
Q 008757 314 AKPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM-EKSNDCSWAPI 389 (554)
Q Consensus 314 ~~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~-~~~~~~~~~~v 389 (554)
.+.-+||++..-+|. .+.|+|||+|+|...++.++++|+. .|..|++|.+.... ++ ...+.+
T Consensus 333 ~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~---~i~V~V 398 (699)
T PLN02631 333 LHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID---SLEVST 398 (699)
T ss_pred CcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC---eeEEEE
Confidence 344567766444454 3569999999986445778877653 37789999875432 11 123445
Q ss_pred EEecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEcccCCCCCCCcHHHHHHH------HH
Q 008757 390 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQ 462 (554)
Q Consensus 390 ~~~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~del~~~------~~ 462 (554)
.+|.|.|..+.....++||||||+||||++|++++.......+ .+..++.|+||+|+.+ |.+|.||+..+ .+
T Consensus 399 eGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~ 477 (699)
T PLN02631 399 EGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS 477 (699)
T ss_pred ECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh
Confidence 5667776655455568999999999999999999987543211 1234899999999987 99999999863 22
Q ss_pred cCCcCeEEEEEccCCC
Q 008757 463 SGALSQLIVAFSREGP 478 (554)
Q Consensus 463 ~~~~~~l~~a~Sr~~~ 478 (554)
+. ..++...+||+++
T Consensus 478 ~~-ni~i~iyVTR~~~ 492 (699)
T PLN02631 478 RL-NLRIEAYITREDK 492 (699)
T ss_pred cC-ceEEEEEEcCCCC
Confidence 22 3478888999754
No 91
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.19 E-value=1e-10 Score=109.16 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=62.1
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCC-Cc-hHHHHHHHHHHHHHHHcCCccccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP 74 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~~~~~L~~lGa~~~~~ 74 (554)
+.+||++||||.|++|+++..|++.|... .+++++++|||+||+ .| ++||.+++.+++.|+++||+.+..
T Consensus 46 d~ii~gspty~~g~~p~~~~~fl~~l~~~----~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~ 117 (167)
T TIGR01752 46 DKLILGTPTWGVGELQEDWEDFLPTLEEL----DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGF 117 (167)
T ss_pred CEEEEEecCCCCCcCcHHHHHHHHHhhcC----CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEce
Confidence 46899999999999999999999988632 378999999999998 48 599999999999999999987744
No 92
>PRK09271 flavodoxin; Provisional
Probab=99.19 E-value=8.5e-11 Score=108.86 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=71.7
Q ss_pred eEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCc--hHHHHHHHHHHHHHHHcCCcccccccccc
Q 008757 2 KIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGD 79 (554)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~~~~~L~~lGa~~~~~~~~~d 79 (554)
.+||+++|||.|.+|+++..|+++|.... .++++++|||+||+.| ++||.+++.++++|.+. .+..+.+
T Consensus 54 ~vilgt~T~~~G~~p~~~~~f~~~l~~~~----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~ 124 (160)
T PRK09271 54 LYLLGTWTDNAGRTPPEMKRFIAELAETI----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIE 124 (160)
T ss_pred EEEEECcccCCCcCCHHHHHHHHHHHHHh----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeee
Confidence 57888999999999999999999997432 3578999999999999 79999999999999864 2434444
Q ss_pred CCC---CcHhhHHHHHHHHhHHH
Q 008757 80 DDQ---CIEDDFSAWRELVWPEL 99 (554)
Q Consensus 80 ~~~---~~~~~~~~W~~~l~~~l 99 (554)
... ...+.+.+|...++.++
T Consensus 125 ~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 125 QMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred cCCccchhHHHHHHHHHHHHHHh
Confidence 322 22468899999988877
No 93
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.16 E-value=1.1e-10 Score=105.74 Aligned_cols=83 Identities=14% Similarity=0.233 Sum_probs=66.4
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCc--hHHHHHHHHHHHHHHHcCCccccccccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLG 78 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~~~~~L~~lGa~~~~~~~~~ 78 (554)
+.+||++||||.|.+|+++..|+++|. .++++|||||+||+.| ++||.++++++++|++++ |..+.
T Consensus 52 d~iilgs~t~~~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~-----~~~~i 119 (140)
T TIGR01754 52 DLVFLGTWTWERGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSH-----PVLKI 119 (140)
T ss_pred CEEEEEcCeeCCCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcC-----CceeE
Confidence 358899999999999999999999986 2578999999999999 689999999999998762 33333
Q ss_pred cCC---CCcHhhHHHHHHHH
Q 008757 79 DDD---QCIEDDFSAWRELV 95 (554)
Q Consensus 79 d~~---~~~~~~~~~W~~~l 95 (554)
+.. ....+.+.+|.+.+
T Consensus 120 ~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 120 EQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred ecCCcccccHHHHHHHHHHh
Confidence 332 23456678998765
No 94
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.14 E-value=1.7e-10 Score=103.98 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=73.3
Q ss_pred CeEEEEeccCCCCCcC-chHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCcccccccccc
Q 008757 1 MKIYVIGCRYGDGEPT-DNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 79 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p-~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d 79 (554)
+.+||+++||+.|.+| ++++.|+++|... .+++++|+|||+|++.|+ ||.+++.++++|+++|++++.+....+
T Consensus 47 d~iilgspty~~g~~p~~~~~~f~~~l~~~----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~ 121 (140)
T TIGR01753 47 DAVLLGCSTWGDEDLEQDDFEPFFEELEDI----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVD 121 (140)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHhhhC----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeee
Confidence 4689999999999999 9999999998743 278999999999999998 999999999999999999998865544
Q ss_pred CCC--CcHhhHHHHHHHH
Q 008757 80 DDQ--CIEDDFSAWRELV 95 (554)
Q Consensus 80 ~~~--~~~~~~~~W~~~l 95 (554)
... ...+..++|.+.|
T Consensus 122 ~~p~~~~~~~~~~~~~~l 139 (140)
T TIGR01753 122 GDPEEEDLDKCREFAKDL 139 (140)
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 422 2333456665543
No 95
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.10 E-value=4.8e-10 Score=102.84 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=79.8
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchH-HHHHHHHHHHHHHHcC--Ccccccccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQG--AKRLVPVGL 77 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~-f~~~~~~~~~~L~~lG--a~~~~~~~~ 77 (554)
+.++++++|||.|+.|+++.+|+..+.. ..+++++||+||+||+.|.. ||.+...+...|+..| +....+...
T Consensus 50 d~~~~g~~t~~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~ 125 (151)
T COG0716 50 DELLLGTPTWGAGELPDDWYDFIEELEP----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLG 125 (151)
T ss_pred CEEEEEeCCCCCCcCCccHHHHHHHhcc----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccc
Confidence 4689999999999999999999999974 34899999999999999987 9999999999999999 666666555
Q ss_pred c--cC--CCCcHhhHHHHHHHHhHH
Q 008757 78 G--DD--DQCIEDDFSAWRELVWPE 98 (554)
Q Consensus 78 ~--d~--~~~~~~~~~~W~~~l~~~ 98 (554)
. +. ....++..+.|.++++..
T Consensus 126 ~~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 126 YIFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred eeccCCCCCccHHHHHHHHHHHHhh
Confidence 5 33 335788899999987764
No 96
>PRK06756 flavodoxin; Provisional
Probab=99.09 E-value=5e-10 Score=102.35 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=75.0
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
+.|||+++|||+|.+|+++..|++.|... .++++++++||.|++.|..||.+.+.++++|.++|++.+.+......
T Consensus 51 d~vi~gspt~~~g~~p~~~~~fl~~l~~~----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~ 126 (148)
T PRK06756 51 DGIILGAYTWGDGDLPDDFLDFYDAMDSI----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVEL 126 (148)
T ss_pred CeEEEEeCCCCCCCCcHHHHHHHHHHhcC----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEec
Confidence 46899999999999999999999988632 27899999999999999999999999999999999999887666544
Q ss_pred CCCcHhhH---HHHHHHHhH
Q 008757 81 DQCIEDDF---SAWRELVWP 97 (554)
Q Consensus 81 ~~~~~~~~---~~W~~~l~~ 97 (554)
.. .++++ ..|.+.+..
T Consensus 127 ~p-~~~d~~~~~~~~~~~~~ 145 (148)
T PRK06756 127 TP-EDEDVEKCLQFGAEFVK 145 (148)
T ss_pred CC-CHHHHHHHHHHHHHHHH
Confidence 33 24444 455555543
No 97
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.03 E-value=3.6e-10 Score=99.15 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=49.0
Q ss_pred EEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCc-hHHHHHHHHHHHHHHH
Q 008757 4 YVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILAN 66 (554)
Q Consensus 4 i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~L~~ 66 (554)
|+||+|||+|+.|+.+.+|++.+.. +.+||||.||++| ++||.+++++.+++..
T Consensus 39 vliTyT~G~G~vP~~~~~Fle~~~n---------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 39 VLITYTGGFGAVPKQTISFLNKKHN---------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred EEEecCCCCCcCCHHHHHHHHhhhh---------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 4559999999999999999998762 7899999999999 8999999999999887
No 98
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.89 E-value=7e-10 Score=106.48 Aligned_cols=164 Identities=18% Similarity=0.281 Sum_probs=94.7
Q ss_pred cccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCC---CCCCCeEE
Q 008757 332 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVPIIM 408 (554)
Q Consensus 332 R~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~---~~~~piim 408 (554)
|.||.|+.-....+.+.|.|+.+ -.|+.|+|+++-...|+ .+.++.|.|+|.... +..+|+++
T Consensus 202 ~~~~~S~~~~t~rN~~R~sVr~~---------A~G~VS~~~H~~~KVGD-----~v~~S~PAG~F~~~r~~~~~N~PL~~ 267 (385)
T KOG3378|consen 202 REYSLSNRVDTCRNQFRISVRRV---------AGGVVSNFVHDNLKVGD-----IVGVSPPAGNFVYKRSEENVNRPLLC 267 (385)
T ss_pred HHHHHhhhhhhhccceeEEEeeh---------hchhhHHHhhccccccc-----eeeccCCCccceeehhhhccCCceEE
Confidence 45555554333346666656543 34999999998776655 356777889997753 45699999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCC--Ccccchhh
Q 008757 409 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--TKEYVQHK 486 (554)
Q Consensus 409 Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~--~~~yVqd~ 486 (554)
.++|+||+|++++++..... |..|- =+-+.+.+..--+. ..++.--||.+.. .+.-|...
T Consensus 268 ~a~GiGiTPLi~iiE~~~~C-------------~~~RP---~~~~~~~~~~K~k~--~~K~~e~~~~E~s~~~~~IV~~~ 329 (385)
T KOG3378|consen 268 FAGGIGITPLIPIIETALLC-------------YSSRP---FKQWLEQLKLKYKE--NLKLKEFFSEESSVTKEQIVDEV 329 (385)
T ss_pred ecCCcCccccHHHHHHHHhc-------------CCCCc---HHHHHHHHHHHHHH--HHHHHHHHHHhhccchhhhhhhh
Confidence 99999999999999987542 11221 01111111110000 0011111222211 23333332
Q ss_pred hcc--cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHc
Q 008757 487 MME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQ 528 (554)
Q Consensus 487 l~~--~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~ 528 (554)
+.. +.+.+-++-...++||.||| ...++.|.+.|.++..+.
T Consensus 330 ~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~~ 372 (385)
T KOG3378|consen 330 MTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVEP 372 (385)
T ss_pred hhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCCc
Confidence 221 12222222235799999999 889999999999876543
No 99
>PRK09267 flavodoxin FldA; Validated
Probab=98.83 E-value=2.3e-08 Score=93.52 Aligned_cols=95 Identities=24% Similarity=0.359 Sum_probs=73.7
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCC-c-hHHHHHHHHHHHHHHHcCCcccccc---
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV--- 75 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~~~~~L~~lGa~~~~~~--- 75 (554)
+.+||++|||+.|.+|++++.|++.+... .|++++++|||+||+. | .+||.+.+.+++.|+..|++.+-..
T Consensus 48 d~vi~g~pt~~~G~~~~~~~~fl~~~~~~----~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~ 123 (169)
T PRK09267 48 DLLILGIPTWGYGELQCDWDDFLPELEEI----DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTD 123 (169)
T ss_pred CEEEEEecCcCCCCCCHHHHHHHHHHhcC----CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCC
Confidence 46899999999999999999999877532 3889999999999985 8 6899999999999999998755221
Q ss_pred ccc-----------------cCCC---CcHhhHHHHHHHHhHHH
Q 008757 76 GLG-----------------DDDQ---CIEDDFSAWRELVWPEL 99 (554)
Q Consensus 76 ~~~-----------------d~~~---~~~~~~~~W~~~l~~~l 99 (554)
|.. |.+. -.++.+++|.++|.+.+
T Consensus 124 gy~~~~~~~~~~~~~~g~~~d~~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 124 GYTFEASKAVDDGKFVGLALDEDNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CccccccceeeCCEEEEEEecCCCchhhhHHHHHHHHHHHHHHh
Confidence 111 1111 13577889998877653
No 100
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.68 E-value=2.9e-08 Score=91.23 Aligned_cols=71 Identities=17% Similarity=0.326 Sum_probs=47.1
Q ss_pred eEEEccCCccchhHHHHHHHHHHHh-hcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcC--CcCeEEEEEccC
Q 008757 406 IIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG--ALSQLIVAFSRE 476 (554)
Q Consensus 406 iimIa~GtGIAPf~s~l~~~~~~~~-~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~--~~~~l~~a~Sr~ 476 (554)
++|||||+||+|+++++++.....+ ......++.|+|.+|+.+.-..|.++|.++.... ...++...++++
T Consensus 4 vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~ 77 (156)
T PF08030_consen 4 VVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRE 77 (156)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-
T ss_pred EEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCC
Confidence 8999999999999999999876554 2233578999999999873335776665543321 233666677665
No 101
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=98.62 E-value=8.5e-08 Score=85.60 Aligned_cols=81 Identities=23% Similarity=0.305 Sum_probs=60.5
Q ss_pred eEEEEeccCCC----CCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCc-hHHHHHHHHHHHHHHHcCCccccccc
Q 008757 2 KIYVIGCRYGD----GEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVG 76 (554)
Q Consensus 2 ~~i~~~sT~g~----G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~L~~lGa~~~~~~~ 76 (554)
.+|+|++|||+ |+.|+...+|++.+.. ....++|+|.||++| ++||.+++.+.+++. .|..
T Consensus 41 ~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n-------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~-------vp~l 106 (134)
T PRK03600 41 PYILITPTYGGGGTAGAVPKQVIRFLNDEHN-------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ-------VPLL 106 (134)
T ss_pred CEEEEEeccCCCCcCCcccHHHHHHHhcccc-------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC-------CCeE
Confidence 47899999999 6999999999876432 235799999999999 789999999999876 2222
Q ss_pred -cccCCCC---cHhhHHHHHHHHhH
Q 008757 77 -LGDDDQC---IEDDFSAWRELVWP 97 (554)
Q Consensus 77 -~~d~~~~---~~~~~~~W~~~l~~ 97 (554)
+. +..+ ..+.+..|.+++|.
T Consensus 107 ~k~-El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 107 YRF-ELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred EEE-ecCCCHHHHHHHHHHHHHHHh
Confidence 22 2233 33456778877765
No 102
>PRK02551 flavoprotein NrdI; Provisional
Probab=98.28 E-value=1.1e-06 Score=80.09 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=53.6
Q ss_pred EEEEeccC-CCCCcCchHHH------HHHHHhhccCCCccCCceeeEEeecCCCc-hHHHHHHHHHHHHHHHcCCccccc
Q 008757 3 IYVIGCRY-GDGEPTDNAAR------FYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVP 74 (554)
Q Consensus 3 ~i~~~sT~-g~G~~p~n~~~------f~~~l~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~L~~lGa~~~~~ 74 (554)
.|+|++|| |.|.+|+|+.. ..++|.. . ...+..++|+|+||++| +.||.+|+++++.. +. |
T Consensus 57 ~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~---~-~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~v----P 125 (154)
T PRK02551 57 FVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAY---H-DNAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GF----P 125 (154)
T ss_pred EEEEEeeecCCCCCcccCccccchHHHHHHHcc---h-hhhhheEEEEeecccHHHHHHHHHHHHHHHHc---CC----C
Confidence 68999999 88988877654 2222321 1 13578899999999999 68999999999764 43 3
Q ss_pred cccccCCCCcHhhHHHHHH
Q 008757 75 VGLGDDDQCIEDDFSAWRE 93 (554)
Q Consensus 75 ~~~~d~~~~~~~~~~~W~~ 93 (554)
+..-=+-.|...|++.-.+
T Consensus 126 ~L~~fEl~GT~~Dv~~v~~ 144 (154)
T PRK02551 126 MLADFELRGTPSDIERIAA 144 (154)
T ss_pred EEEEeeccCCHHHHHHHHH
Confidence 3222244566666554433
No 103
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.16 E-value=1.5e-05 Score=89.47 Aligned_cols=194 Identities=14% Similarity=0.246 Sum_probs=107.3
Q ss_pred hHHHHHHhcC---CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCC--Cc-CCC----Ccee
Q 008757 318 LGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM--EK-SND----CSWA 387 (554)
Q Consensus 318 ~~~ll~~~~p---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~--~~-~~~----~~~~ 387 (554)
+||++-.-+| ..+..||||+|+| .++.+.+.++.. |.-|+-|.+.... .+ ..+ ...+
T Consensus 384 ~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~i 450 (646)
T KOG0039|consen 384 PGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPKI 450 (646)
T ss_pred CCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCceE
Confidence 5665432235 4578999999999 467888877654 5556555544321 00 001 1234
Q ss_pred eEEEecCCCCCCCCCCCCeEEEccCCccchhHHHHHHHHHHHhhcC------------CCCCeEEEEcccCCCCCCCcHH
Q 008757 388 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDYIYED 455 (554)
Q Consensus 388 ~v~~~~~~F~lp~~~~~piimIa~GtGIAPf~s~l~~~~~~~~~~~------------~~~~~~L~~G~R~~~~d~ly~d 455 (554)
.|.+|.|.=..+-..-.-++|||+|.|++||.|.+++.....+.+. ..+++..+|-||....=..|.+
T Consensus 451 ~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~ 530 (646)
T KOG0039|consen 451 LIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKG 530 (646)
T ss_pred EEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHHH
Confidence 4444433211111122347999999999999999999886543332 2467888888988763234556
Q ss_pred HHHHHH---HcCCcCeEEEEEccC----CC----------------Ccccchhh------hcccHHHHHHHH---hCC--
Q 008757 456 ELNNFV---QSGALSQLIVAFSRE----GP----------------TKEYVQHK------MMEKSSDIWNML---SEG-- 501 (554)
Q Consensus 456 el~~~~---~~~~~~~l~~a~Sr~----~~----------------~~~yVqd~------l~~~~~~v~~~l---~~~-- 501 (554)
.+.+.. ..+.+ .++...+.. .. .+..++.. -+-+-+++.+-+ .++
T Consensus 531 ~l~~v~~~~~~~~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~ 609 (646)
T KOG0039|consen 531 LLTEVEEYDSSGVI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVR 609 (646)
T ss_pred HHHHHHHHHhcCCc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCce
Confidence 555554 22222 233333211 00 01111111 122223333322 122
Q ss_pred CEEEEecCCcchHHHHHHHHHHHHH
Q 008757 502 AYLYVCGDAKSMARDVHRTLHTIVQ 526 (554)
Q Consensus 502 ~~iyvCG~~~~M~~~v~~~L~~i~~ 526 (554)
.-|+.||| +.|.+.+++...+...
T Consensus 610 vgVf~CGp-~~l~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 610 VGVFSCGP-PGLVKELRKLCNDFSS 633 (646)
T ss_pred EEEEEeCC-HHHHHHHHHHHHhccc
Confidence 47999999 8999999988777543
No 104
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=97.82 E-value=4e-05 Score=81.51 Aligned_cols=89 Identities=16% Similarity=0.053 Sum_probs=69.0
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
+.+||.++||+.|.+|+ +..|+++|... .++++.+|+||. |..||.+.+.+.++|+++|++.+.+......
T Consensus 302 d~ii~GspT~~~~~~~~-~~~~l~~l~~~----~~~~K~~a~FGs----ygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~ 372 (394)
T PRK11921 302 KAILVGSSTINRGILSS-TAAILEEIKGL----GFKNKKAAAFGS----YGWSGESVKIITERLKKAGFEIVNDGIRELW 372 (394)
T ss_pred CEEEEECCCcCccccHH-HHHHHHHhhcc----CcCCCEEEEEec----CCCccHHHHHHHHHHHHCCCEEccCcEEEEe
Confidence 36899999999898864 89999988743 278999999997 6668999999999999999999877555444
Q ss_pred CC--CcHhhHHHHHHHHhHH
Q 008757 81 DQ--CIEDDFSAWRELVWPE 98 (554)
Q Consensus 81 ~~--~~~~~~~~W~~~l~~~ 98 (554)
.. ...+.+++|.+.|...
T Consensus 373 ~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 373 NPDDEALDRCRSFGENFAES 392 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 32 2334567777766543
No 105
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.78 E-value=4.7e-05 Score=87.41 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=60.1
Q ss_pred CChHHHHHHhcC-----CC-CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeE
Q 008757 316 PPLGVFFAAIVP-----RL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 389 (554)
Q Consensus 316 ~p~~~ll~~~~p-----~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v 389 (554)
.-+|||+..-.+ .+ .||++||++... ..+.+++++.+| |..|.+|+++.+|+. +.+
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvV-----------GkgT~~Ls~l~~Gd~------v~v 880 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEV-----------GKSTSLCKTLSENEK------VVL 880 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEE-----------ChHHHHHhcCCCCCE------EEE
Confidence 347888854332 12 567999999764 246789888876 889999999987653 456
Q ss_pred EEecC-CCCCCCCCCCCeEEEccCCccch
Q 008757 390 FVRQS-NFKLPADAKVPIIMIGPGTGLAP 417 (554)
Q Consensus 390 ~~~~~-~F~lp~~~~~piimIa~GtGIAP 417 (554)
.+|.| .|.++. ...+++||||+|+||
T Consensus 881 ~GPLG~pF~i~~--~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 881 MGPTGSPLEIPQ--NKKIVIVDFEVGNIG 907 (1028)
T ss_pred EcccCCCCCCCC--CCeEEEEEccccHHH
Confidence 66744 587764 346999999999998
No 106
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=97.29 E-value=0.00031 Score=61.46 Aligned_cols=74 Identities=28% Similarity=0.405 Sum_probs=48.2
Q ss_pred EEEEeccCCCCC----cCchHHHHHHHHhhccCCCccCCceeeEEeecCCCc-hHHHHHHHHHHHHHHHcCCcccccccc
Q 008757 3 IYVIGCRYGDGE----PTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGL 77 (554)
Q Consensus 3 ~i~~~sT~g~G~----~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~L~~lGa~~~~~~~~ 77 (554)
.|+|++|||.|+ .|....+|.+.-... ..=.+|+|-||++| ..||.+|+++.+.. |. |+..
T Consensus 41 ~vLitpTy~~G~~~~~vp~~v~~FL~~~~N~-------~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~V----Pll~ 106 (122)
T PF07972_consen 41 FVLITPTYGFGENDGGVPKQVIRFLENPDNR-------KLLRGVIGSGNRNFGDNFCLAADKIAEKY---GV----PLLY 106 (122)
T ss_dssp EEEEEE-BTTTBSSTSS-HHHHHHHHSHHHG-------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T------EEE
T ss_pred EEEEecccCCCCCCCCCCHHHHHHHHHHHHH-------hhheeEEecCCcHHHHHHHHHHHHHHHHc---CC----CEEE
Confidence 689999999999 999988887755422 23468999999999 68999999988765 32 3222
Q ss_pred ccCCCCcHhhHHH
Q 008757 78 GDDDQCIEDDFSA 90 (554)
Q Consensus 78 ~d~~~~~~~~~~~ 90 (554)
-=+-.|.++|++.
T Consensus 107 kfEl~Gt~~Dv~~ 119 (122)
T PF07972_consen 107 KFELSGTPEDVER 119 (122)
T ss_dssp EEETT--HHHHHH
T ss_pred EEecCCCHHHHHH
Confidence 1133556666544
No 107
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=97.28 E-value=0.0006 Score=74.24 Aligned_cols=90 Identities=8% Similarity=-0.076 Sum_probs=67.6
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 80 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~ 80 (554)
+-|||.++||+.|.+| .++.|++.|... .++++++++||.+ .-+|.+.+.+.++|+.+|++.+ +..++..
T Consensus 306 d~vilGspT~~~~~~p-~~~~fl~~l~~~----~l~gK~~~vFGSy----gw~g~a~~~~~~~l~~~g~~~~-~~l~~~~ 375 (479)
T PRK05452 306 KGVLVGSSTMNNVMMP-KIAGLLEEITGL----RFRNKRASAFGSH----GWSGGAVDRLSTRLQDAGFEMS-LSLKAKW 375 (479)
T ss_pred CEEEEECCccCCcchH-HHHHHHHHhhcc----CcCCCEEEEEECC----CcCcHHHHHHHHHHHHCCCEEe-ccEEEEe
Confidence 3589999999888777 699999988743 2789999999964 5589999999999999999885 4344433
Q ss_pred CC--CcHhhHHHHHHHHhHHHH
Q 008757 81 DQ--CIEDDFSAWRELVWPELD 100 (554)
Q Consensus 81 ~~--~~~~~~~~W~~~l~~~l~ 100 (554)
.. ...+.+.++.+.|.+++.
T Consensus 376 ~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 376 RPDQDALELCREHGREIARQWA 397 (479)
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 22 233455677777766665
No 108
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=97.05 E-value=0.00016 Score=60.98 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCChHHHHHHhcCC---CCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEE
Q 008757 315 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 391 (554)
Q Consensus 315 ~~p~~~ll~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~ 391 (554)
...+||++..-++. ...|+|||+|+|. ..+.++|+|+.. ..|.+|+||+++.+|+ .+.+..
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEE
Confidence 45678887655451 2359999999996 456888877654 3488999999976654 367888
Q ss_pred ecCCCC
Q 008757 392 RQSNFK 397 (554)
Q Consensus 392 ~~~~F~ 397 (554)
|.|.|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 888874
No 109
>PRK05568 flavodoxin; Provisional
Probab=97.04 E-value=0.0024 Score=57.50 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=50.1
Q ss_pred CeEEEEeccCCCCCcC-chHHHHHHHHhhccCCCccCCceeeEEeec-CCCchHHHHHHHHHHHHHHHcCCccccc
Q 008757 1 MKIYVIGCRYGDGEPT-DNAARFYKWFTEKEGGEWLQKLKYGVFGLG-NRQYEHFNKIAKVVDEILANQGAKRLVP 74 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p-~n~~~f~~~l~~~~~~~~l~~~~~avfGlG-ds~y~~f~~~~~~~~~~L~~lGa~~~~~ 74 (554)
+.|||.++||+.|.+| ..++.|++.+.. .++++++++||.+ ++. ..+.+.+.+.|+++|++.+.+
T Consensus 50 d~iilgsp~y~~~~~~~~~~~~f~~~~~~-----~~~~k~~~~f~t~G~~~----~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 50 DVVALGSPAMGDEVLEEGEMEPFVESISS-----LVKGKKLVLFGSYGWGD----GEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred CEEEEECCccCcccccchhHHHHHHHhhh-----hhCCCEEEEEEccCCCC----ChHHHHHHHHHHHCCCEEeCC
Confidence 4689999999988864 789999988752 2678999999983 221 224678888999999987765
No 110
>PRK05569 flavodoxin; Provisional
Probab=96.86 E-value=0.004 Score=56.03 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=52.2
Q ss_pred CeEEEEeccCCCCCcC-chHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccc
Q 008757 1 MKIYVIGCRYGDGEPT-DNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 74 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p-~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~ 74 (554)
+.|||.++||+.|.+| +.++.|++.|... .++++++++||.+...+ +.+.+.+.+.|...|++.+-+
T Consensus 50 d~iilgsPty~~~~~~~~~~~~~~~~l~~~----~~~~K~v~~f~t~g~~~---~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 50 DAVAFGSPSMDNNNIEQEEMAPFLDQFKLT----PNENKKCILFGSYGWDN---GEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred CEEEEECCCcCCCcCChHHHHHHHHHhhcc----CcCCCEEEEEeCCCCCC---CcHHHHHHHHHHHCCCeEeee
Confidence 4689999999888764 7999999988632 26899999999875443 345677889999999877554
No 111
>PRK06242 flavodoxin; Provisional
Probab=96.62 E-value=0.0071 Score=54.97 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=51.7
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 74 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~ 74 (554)
+.|||.++|| .|.+|..++.|.+.+.. +.++++++||.+......+ .+.+.+.|..+|++.+..
T Consensus 45 d~ii~g~pvy-~~~~~~~~~~fl~~~~~------~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 45 DLIGFGSGIY-FGKFHKSLLKLIEKLPP------VSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred CEEEEeCchh-cCCcCHHHHHHHHhhhh------hcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEE
Confidence 4689999999 58899999999887741 5789999999988765433 688999999999987654
No 112
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0099 Score=52.28 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=57.0
Q ss_pred EEEEeccCCCC----CcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCc-hHHHHHHHHHHHHHHHcCCcccccccc
Q 008757 3 IYVIGCRYGDG----EPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGL 77 (554)
Q Consensus 3 ~i~~~sT~g~G----~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~~~~~L~~lGa~~~~~~~~ 77 (554)
.|+|++|||.| +.|.--.+|.. ... -..+--+|.|-|+++| ..||.+++.+.+++ |-.-++..
T Consensus 43 yvlitpTyg~G~~~~~Vp~~vi~FLn---~~~----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~F-- 110 (141)
T COG1780 43 YVLITPTYGGGGTVGAVPKQVIRFLN---NEH----NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRF-- 110 (141)
T ss_pred eEEEeccccCCCccCccCHHHHHHhc---ccc----chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEE--
Confidence 58899999999 88887555543 222 2345578999999999 68999999887654 43222221
Q ss_pred ccCCCCcHh---hHHHHHHHHhHHHH
Q 008757 78 GDDDQCIED---DFSAWRELVWPELD 100 (554)
Q Consensus 78 ~d~~~~~~~---~~~~W~~~l~~~l~ 100 (554)
+-.|..+ .+.+|...+|+...
T Consensus 111 --EL~GT~~Dv~~v~~~v~~~~~~~~ 134 (141)
T COG1780 111 --ELLGTAEDVAAVRKGVTEFWKRAP 134 (141)
T ss_pred --eccCCHHHHHHHHHHHHHHHHhCC
Confidence 3334433 57788888887443
No 113
>PRK07116 flavodoxin; Provisional
Probab=95.11 E-value=0.081 Score=48.78 Aligned_cols=80 Identities=9% Similarity=0.019 Sum_probs=51.6
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEee-cCCCchHHHHHHHHHHHHHHHcCCcccccccccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 79 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d 79 (554)
+.|||++++|+ |.+|.-.+.|.+.+ .++++++++|+. |.+.+ +.+...+.+.+ +...+.+-...+
T Consensus 78 D~Iiig~Pv~~-~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~---~~~~~~~~~~~~ 143 (160)
T PRK07116 78 DVIFLGFPIWW-YVAPRIINTFLESY-------DFSGKTVIPFATSGGSGI---GNAEKELKKSY---PDANWKEGRLLN 143 (160)
T ss_pred CEEEEECChhc-cccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHC---CcCccccCeeec
Confidence 46899999995 88898888887654 278899999999 76664 33334444444 322232322222
Q ss_pred CCCCcHhhHHHHHHHH
Q 008757 80 DDQCIEDDFSAWRELV 95 (554)
Q Consensus 80 ~~~~~~~~~~~W~~~l 95 (554)
.+ ..+.++++|++++
T Consensus 144 ~~-~~~~~i~~wl~~~ 158 (160)
T PRK07116 144 GG-ASKEEIKEWINKL 158 (160)
T ss_pred CC-CcHHHHHHHHHHc
Confidence 21 2356799998764
No 114
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=94.60 E-value=0.12 Score=49.47 Aligned_cols=71 Identities=13% Similarity=-0.107 Sum_probs=56.7
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
+-|||.++|| .|.+|..++.|++++........+.++..++|+.+....--...+...+...|..+|..-+
T Consensus 70 D~ii~GSPty-~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 70 DAIIFGTPTR-FGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred CEEEEEeccc-ccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 3588999999 7999999999999987432233588999999999877766676677778888899998654
No 115
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=94.12 E-value=0.18 Score=48.37 Aligned_cols=71 Identities=13% Similarity=-0.078 Sum_probs=53.3
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
+-|||.++|| .|.+|..++.|++++...-....+.++.+++||...+..----...+.+...|..+|..-+
T Consensus 71 D~ii~gsPty-~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 71 DAIIFGTPTR-FGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred CEEEEEeccc-CCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 4589999999 8999999999999987432233588999999999776543333344567777888998654
No 116
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=93.46 E-value=0.47 Score=47.11 Aligned_cols=166 Identities=20% Similarity=0.365 Sum_probs=94.9
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCCCCCCCCCCCeE
Q 008757 328 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 407 (554)
Q Consensus 328 ~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F~lp~~~~~pii 407 (554)
+...|.|||.+-. ...-++.|-+|.- + ..|.+|.|-.+..+|+. +.+..+.|.+..++.. .-++
T Consensus 84 r~~~R~YTiR~~d---~~~~e~~vDfVlH----~--~~gpas~WA~~a~~GD~------l~i~GP~g~~~p~~~~-~~~l 147 (265)
T COG2375 84 RPPQRTYTIRAVD---AAAGELDVDFVLH----G--EGGPASRWARTAQPGDT------LTIMGPRGSLVPPEAA-DWYL 147 (265)
T ss_pred CCCcccceeeeec---ccccEEEEEEEEc----C--CCCcchhhHhhCCCCCE------EEEeCCCCCCCCCCCc-ceEE
Confidence 3457999998642 2334444555421 0 35999999999887653 5566677777665543 3499
Q ss_pred EEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCCcccchhhh
Q 008757 408 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 487 (554)
Q Consensus 408 mIa~GtGIAPf~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~~~yVqd~l 487 (554)
|||==|++--+.++|++.-.. .+...|.-..+.. |. ++ +.....+ .+.....++.....-+++.+
T Consensus 148 LigDetAlPAIa~iLE~lp~~-------~~~~a~lev~d~a-d~---~~---l~~~~~l-~~~Wl~r~~~~~~~ll~~a~ 212 (265)
T COG2375 148 LIGDETALPAIARILETLPAD-------TPAEAFLEVDDAA-DR---DE---LPSPDDL-ELEWLARDDAPTEQLLAAAL 212 (265)
T ss_pred EeccccchHHHHHHHHhCCCC-------CceEEEEEeCChH-Hh---hc---cCCCCce-eEEEecCCCccchHHHHHHH
Confidence 999999988888888875321 3456677777655 43 11 2222222 34333222211111122222
Q ss_pred cccHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHH
Q 008757 488 MEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 535 (554)
Q Consensus 488 ~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~ 535 (554)
.+. .+ ..+.++||.|- ..|++.++. .+..+.|++...
T Consensus 213 ~~~------~~P~~~~~vwiagE-~~~v~~~Rk----~L~~e~g~dk~~ 250 (265)
T COG2375 213 AQA------ALPAGDYYVWIAGE-ASAVKAIRK----FLRNERGFDKSR 250 (265)
T ss_pred hcc------cCCCCceEEEEecc-HHHHHHHHH----HHhhhcCCCHHH
Confidence 221 12 22479999997 677765555 455566777655
No 117
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=92.13 E-value=0.062 Score=56.49 Aligned_cols=63 Identities=32% Similarity=0.538 Sum_probs=55.0
Q ss_pred EEeecCCCc-h-----HHHHHHHHHHHHHHHcCCccccccccccCCC--CcHhhHHHHHHHHhHHHHhhhC
Q 008757 42 VFGLGNRQY-E-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLLR 104 (554)
Q Consensus 42 vfGlGds~y-~-----~f~~~~~~~~~~L~~lGa~~~~~~~~~d~~~--~~~~~~~~W~~~l~~~l~~~~~ 104 (554)
|||+||+.| | .|++-.|.+..+|.+|+|..+..+|.|++++ +.......|.-.||+++..-..
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~~ 71 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGIN 71 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCCC
Confidence 699999998 3 5999999999999999999999999998854 5667788999999999987654
No 118
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=89.53 E-value=0.98 Score=40.81 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=52.8
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
+.+||++++| .|.+|.-++.|++++.. .....+.++.+++++.|.+.+.... +...+...|..+|+.-+
T Consensus 72 D~iI~~sP~y-~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~~~-~~~~l~~~~~~~~~~~~ 140 (152)
T PF03358_consen 72 DGIIFASPVY-NGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRRGGLR-ALEQLRQILDYLGMIVV 140 (152)
T ss_dssp SEEEEEEEEB-TTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSSTTHH-HHHHHHHHHHHTTBEEE
T ss_pred CeEEEeecEE-cCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCcHHHH-HHHHHHHHHHHCCCEEc
Confidence 4689999999 89999999999999974 2233489999999999876554333 45677888888998654
No 119
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=88.48 E-value=1.4 Score=40.90 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=52.0
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 74 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~ 74 (554)
+-+||+++.| +|..|.-.+.|.+|+.. ..+.++.+++++.| ..+.++...-..+...|..+||..+.+
T Consensus 67 D~iI~~sP~Y-~~sip~~LK~~iD~~~~----~~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 67 DGVVVATPVY-KASYSGVLKALLDLLPQ----RALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CEEEEECCcc-cCCCCHHHHHHHHhCCh----hhhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccc
Confidence 4689999999 89999999999999852 23788888888888 455555443345788999999965433
No 120
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=87.13 E-value=4.9 Score=38.17 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=52.0
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
+-+||+++.| +|..|.-.|.|++|+. ...+.++.+++++.| ....+.-..-..+...|..+||..+
T Consensus 68 D~iIi~tP~Y-~~s~pg~LKn~iD~l~----~~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 68 DGLIVATPVY-KASFSGALKTLLDLLP----ERALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CEEEEECCcc-CCCCCHHHHHHHHhCC----hhhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 4689999999 8999999999999994 235889999999998 4454444443556788889999754
No 121
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=83.69 E-value=1.6 Score=40.89 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=32.8
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeec
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLG 46 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlG 46 (554)
+.|||.++|| .|.++..++.|.+... ..|+++++++|++|
T Consensus 48 D~vIlGspi~-~G~~~~~~~~fl~~~~-----~~l~~K~v~~F~v~ 87 (177)
T PRK11104 48 DRVVIGASIR-YGHFHSALYKFVKKHA-----TQLNQMPSAFFSVN 87 (177)
T ss_pred CEEEEECccc-cCCcCHHHHHHHHHHH-----HHhCCCeEEEEEec
Confidence 4688999998 7889999999987543 13889999999999
No 122
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=81.99 E-value=4.3 Score=37.77 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=49.6
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
+-+||+++.| +|.+|.-.+.|++|+.. ..+.++..++++.|..... ...+...+...|..+||..+
T Consensus 70 D~iIi~tP~Y-~~s~~~~LKn~lD~~~~----~~l~~K~~~~v~~~g~~~~-~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 70 DLLVVGSPVY-RGSYTGLFKHLFDLVDP----NALIGKPVLLAATGGSERH-ALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred CEEEEECCcC-cCcCcHHHHHHHHhcCH----hHhCCCEEEEEEecCCccc-hHHHHHHHHHHHHHhCcccc
Confidence 4689999999 89999999999999852 2488999999999765432 11233446778888898655
No 123
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=77.60 E-value=7.6 Score=35.60 Aligned_cols=81 Identities=10% Similarity=0.140 Sum_probs=45.3
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEee-cCCCchHHHHHHHHHHHHHHHcCCcccccccccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 79 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d 79 (554)
+.|++..+.| .|.+|.-...|.+.. .++|++++.|-. |.+... .+.+.+.+.+ +...+.+-....
T Consensus 75 D~I~lG~PvW-~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs~~~---~~~~~l~~~~---~~a~i~~g~~~~ 140 (156)
T PF12682_consen 75 DTIFLGTPVW-WGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGSGFG---NSLEDLKKLC---PGATILEGLAIN 140 (156)
T ss_dssp SEEEEEEEEE-TTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS--CH---HHHHHHHHH----TTSEE---EE--
T ss_pred CEEEEechHH-cCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCCChh---HHHHHHHHHC---CCCEeecCeEEe
Confidence 5789999999 799999888887632 288999999955 555543 2223333332 233343322222
Q ss_pred CCCCcHhhHHHHHHHH
Q 008757 80 DDQCIEDDFSAWRELV 95 (554)
Q Consensus 80 ~~~~~~~~~~~W~~~l 95 (554)
.+.-.++++.+|+++|
T Consensus 141 ~~~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 141 RGSVSEEEIKEWLKKI 156 (156)
T ss_dssp -S---HHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHhC
Confidence 2222578899999864
No 124
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=76.28 E-value=7.6 Score=34.82 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=34.9
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ 49 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~ 49 (554)
+.|||.+++|+ |..|..+.+|.+.+.. .+++.++++|.+|-+.
T Consensus 45 D~vi~gspiy~-g~~~~~~~~fi~~~~~-----~l~~k~v~~f~~~~~~ 87 (143)
T PF12724_consen 45 DAVIFGSPIYA-GRIPGEMREFIKKNKD-----NLKNKKVALFSVGGSS 87 (143)
T ss_pred CEEEEEEEEEC-CcCCHHHHHHHHHHHH-----HHcCCcEEEEEEeCCC
Confidence 57899999994 8999999999987642 2778999999987653
No 125
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=74.60 E-value=7.1 Score=39.98 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=41.6
Q ss_pred CCCCeeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecC
Q 008757 151 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 200 (554)
Q Consensus 151 ~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N 200 (554)
...++.++|+..+.++.|.+..++++|.|+.+ ..+.|+||.++.|.++.
T Consensus 21 ~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 21 PKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 69 (307)
T ss_pred CCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCC
Confidence 34567889999999998888889999999975 57899999999998763
No 126
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=72.99 E-value=8.4 Score=38.97 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=40.4
Q ss_pred CCCCeeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeec
Q 008757 151 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 199 (554)
Q Consensus 151 ~~~~~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~ 199 (554)
...++.+.|+..+.++.+....+++++.|+. +..+.|+||.++.|.++
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDH-GGKLPYLEGQSIGIIPP 52 (286)
T ss_pred CCCCeEEEEEeceeccCCCCCcceEEEEEeC-CCcccccCCceEEEECC
Confidence 3456778999999999877778899999997 45789999999999865
No 127
>PRK09739 hypothetical protein; Provisional
Probab=72.06 E-value=29 Score=32.98 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=59.5
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhc----cCCCccCCceeeEEeecCCCchHH-----HH-HHHHHH-HHHHHcCC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEK----EGGEWLQKLKYGVFGLGNRQYEHF-----NK-IAKVVD-EILANQGA 69 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~----~~~~~l~~~~~avfGlGds~y~~f-----~~-~~~~~~-~~L~~lGa 69 (554)
+.+||+++-| ++.+|.-.+.|.+.+... .....|.+++.+++......|..| .. +...+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 4689999999 788999999999987521 112347788888876533344332 22 222344 44445677
Q ss_pred ccccccccccCC-----CCcHhhHHHHHHHHhHHHHh
Q 008757 70 KRLVPVGLGDDD-----QCIEDDFSAWRELVWPELDN 101 (554)
Q Consensus 70 ~~~~~~~~~d~~-----~~~~~~~~~W~~~l~~~l~~ 101 (554)
+.+-....+... ....+..+.|++++.....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 196 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDA 196 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHH
Confidence 654222222211 33456788998887665543
No 128
>PRK13556 azoreductase; Provisional
Probab=71.09 E-value=37 Score=32.50 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=62.4
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhc-------c--CCCccCCceeeEEeecCCCc-----hHHHHHHHHHHHHHHH
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEK-------E--GGEWLQKLKYGVFGLGNRQY-----EHFNKIAKVVDEILAN 66 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~-------~--~~~~l~~~~~avfGlGds~y-----~~f~~~~~~~~~~L~~ 66 (554)
+.|||+++-| ++.+|.-.+.+++++... . +...+.+++..|+...-..| ..+..+..-+...|.-
T Consensus 91 D~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l~~il~~ 169 (208)
T PRK13556 91 DKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYVASMMGF 169 (208)
T ss_pred CEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHHHHHHHh
Confidence 5789999999 788999999999999732 0 12358899999987643445 3455556678888888
Q ss_pred cCCccccccccccCCCCcHhhHHHHHHHHhHH
Q 008757 67 QGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 98 (554)
Q Consensus 67 lGa~~~~~~~~~d~~~~~~~~~~~W~~~l~~~ 98 (554)
+|++.+ +....+......+..+.+.++-...
T Consensus 170 ~G~~~~-~~v~~~~~~~~~~~~~~~~~~a~~~ 200 (208)
T PRK13556 170 FGVTNM-ETVVIEGHNQFPDKAEEIITAGLEE 200 (208)
T ss_pred cCCCce-eEEEEehhhcChhHHHHHHHHHHHH
Confidence 998764 3333322222233344554443333
No 129
>PRK00170 azoreductase; Reviewed
Probab=70.31 E-value=30 Score=32.60 Aligned_cols=98 Identities=8% Similarity=-0.070 Sum_probs=59.6
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhc---------cCCCccCCceeeEEeecCCCc--hHHHHHHHHHHHHHHHcCC
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEK---------EGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGA 69 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~---------~~~~~l~~~~~avfGlGds~y--~~f~~~~~~~~~~L~~lGa 69 (554)
+.|||+++-| .+..|.-.+.|.+++... .+...+.++++.++......+ ..+..+...+...|.-+|.
T Consensus 88 D~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~~~~~~G~ 166 (201)
T PRK00170 88 DKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKTFLGFIGI 166 (201)
T ss_pred CEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHHHHHhcCC
Confidence 4689999999 788999999999998521 112357889998888633222 1224445557777888898
Q ss_pred ccccccccccCCCCcHhhHHHHHHHHhHHHH
Q 008757 70 KRLVPVGLGDDDQCIEDDFSAWRELVWPELD 100 (554)
Q Consensus 70 ~~~~~~~~~d~~~~~~~~~~~W~~~l~~~l~ 100 (554)
+.+-... +..-....+.-+.|++.....+.
T Consensus 167 ~~~~~~~-~~g~~~~~~~~~~~~~~a~~~~~ 196 (201)
T PRK00170 167 TDVEFVF-AEGHNYGPEKAAKIISAAKAAAD 196 (201)
T ss_pred CceEEEE-EecccCCchHHHHHHHHHHHHHH
Confidence 7543332 22211122334556555444333
No 130
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=67.14 E-value=43 Score=31.56 Aligned_cols=98 Identities=15% Similarity=0.044 Sum_probs=66.9
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhh---cc--------CCCccCCceeeEEe-ecCCCc--h-------HHHHHHHH
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTE---KE--------GGEWLQKLKYGVFG-LGNRQY--E-------HFNKIAKV 59 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~---~~--------~~~~l~~~~~avfG-lGds~y--~-------~f~~~~~~ 59 (554)
+.|||+++.| .+.+|.-.+.|.+.+-. .- ....|.++++.|+- .|...| . .+......
T Consensus 80 D~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 80 DHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred CcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 5799999999 78899999999998741 10 12458888887775 555522 1 45666666
Q ss_pred HHHHHHHcCCccccccccccCC-CCcHhhHHHHHHHHhHHH
Q 008757 60 VDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 99 (554)
Q Consensus 60 ~~~~L~~lGa~~~~~~~~~d~~-~~~~~~~~~W~~~l~~~l 99 (554)
+...+.-+|.+.+-........ .+.++..++|++++-+.|
T Consensus 159 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 159 LRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 8889999999987665543332 233677888888765543
No 131
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=66.99 E-value=1.8 Score=36.74 Aligned_cols=60 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHhhCCC--CCCChHHHHHHhcCCC-----CCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccC
Q 008757 304 LLEVMSEFPS--AKPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL 376 (554)
Q Consensus 304 ~~d~l~~fp~--~~~p~~~ll~~~~p~~-----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~ 376 (554)
+++|....|. .+.-+||++-+-+|.+ +..+|||+|+|. .+.+.++|+.. |..|..|.+..
T Consensus 16 ~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~-----------g~~T~~L~~~~ 82 (105)
T PF08022_consen 16 VVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKAR-----------GGWTKRLYEHL 82 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeC-----------CCchHHHHHHH
Confidence 3444333333 4555777665444644 567999999987 56777766532 55677777654
No 132
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=64.79 E-value=8.1 Score=40.86 Aligned_cols=72 Identities=8% Similarity=0.016 Sum_probs=56.0
Q ss_pred EEEEeccCCCCCcCchHHHHHHHHhhc----cCCCccCCceeeEEeecCCCc--hHHHHHHHHHHHHHHHcCCccccc
Q 008757 3 IYVIGCRYGDGEPTDNAARFYKWFTEK----EGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVP 74 (554)
Q Consensus 3 ~i~~~sT~g~G~~p~n~~~f~~~l~~~----~~~~~l~~~~~avfGlGds~y--~~f~~~~~~~~~~L~~lGa~~~~~ 74 (554)
+++++-|.--|.+.+-.++||+||... ..+....-.|++++|.|++.= ..||.+++-+-.+++-+||+..-+
T Consensus 410 vda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ge 487 (601)
T KOG1160|consen 410 VDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGE 487 (601)
T ss_pred EeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEecc
Confidence 455566666788888999999999721 122336678999999999985 589999999999999999987633
No 133
>PRK01355 azoreductase; Reviewed
Probab=63.52 E-value=47 Score=31.56 Aligned_cols=100 Identities=10% Similarity=0.014 Sum_probs=61.2
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhc---------cC---CCccCCceeeEEeecCCC--chHHHHHHHHHHHHHHH
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEK---------EG---GEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILAN 66 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~---------~~---~~~l~~~~~avfGlGds~--y~~f~~~~~~~~~~L~~ 66 (554)
+.|||+++.| ++.+|.-.+.|++++... .. ...+.+++..|+...... +..|.....-+...+.-
T Consensus 79 D~iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~ 157 (199)
T PRK01355 79 DKVVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEF 157 (199)
T ss_pred CEEEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHh
Confidence 4689999999 788999999999998521 11 124778888776444422 21244455667788888
Q ss_pred cCCccccccccccCCC-CcH-hhHHHHHHHHhHHHHh
Q 008757 67 QGAKRLVPVGLGDDDQ-CIE-DDFSAWRELVWPELDN 101 (554)
Q Consensus 67 lGa~~~~~~~~~d~~~-~~~-~~~~~W~~~l~~~l~~ 101 (554)
+|.+.+-.......+. ..+ +....|.+.-.+.+.+
T Consensus 158 ~G~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 158 LGAKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred cCCCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 9998654443322221 111 2266666655554443
No 134
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=61.02 E-value=25 Score=32.41 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=36.6
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCC-c-hHHHHHHHHHHHHHHH
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILAN 66 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~~~~~L~~ 66 (554)
+.|++...++ .|.++..+++|.+.| ++.++++||.--.. . +++..+.+++.+.+.+
T Consensus 41 D~i~lG~w~d-~G~~d~~~~~fl~~l---------~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 41 DLIFLGFWID-KGTPDKDMKEFLKKL---------KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred CEEEEEcCcc-CCCCCHHHHHHHHHc---------cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 3466666777 699999999997754 46788888763221 1 3566665555555544
No 135
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=54.66 E-value=11 Score=34.75 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=41.6
Q ss_pred cCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccccccccccCCCCcHhhHHHHH
Q 008757 35 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 92 (554)
Q Consensus 35 l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~~~~~~~~~~~W~ 92 (554)
+...+++|+=.||+....++..+..+..+|++.|++...-....|+.....+.+++|.
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~ 59 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWI 59 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHH
Confidence 4578999999999988878888899999999999875433233344333445555553
No 136
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=54.56 E-value=1.6e+02 Score=27.74 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=62.9
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhc-----cCCCccCCceeeEEe-ecCCC--chH--HHH-----HHHHHHHHHH
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEK-----EGGEWLQKLKYGVFG-LGNRQ--YEH--FNK-----IAKVVDEILA 65 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~-----~~~~~l~~~~~avfG-lGds~--y~~--f~~-----~~~~~~~~L~ 65 (554)
+.|||..+.| ...+|.-.+.+.+..-.. ..+..|+++++.|.- .|... |.. |+. .-.-+...+.
T Consensus 63 D~iV~~fPl~-w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~ 141 (184)
T PRK04930 63 DVIVFQHPLY-TYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAA 141 (184)
T ss_pred CEEEEEcCcc-ccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHH
Confidence 5799999999 666888888888766521 122358899888764 45533 421 221 2222344445
Q ss_pred HcCCccccccccccCCCCcHhhHHHHHHHHhHHHHhh
Q 008757 66 NQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 102 (554)
Q Consensus 66 ~lGa~~~~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~ 102 (554)
-+|.+.+-+....+.....+++.++|.+...+.|.+.
T Consensus 142 ~~Gm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 142 MCRMHWLSPIIIYWARRQSPEELASHARAYGDWLANP 178 (184)
T ss_pred HcCCeEcCcEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 5688776665555554455677888877766666554
No 137
>PRK13555 azoreductase; Provisional
Probab=48.04 E-value=1.8e+02 Score=27.95 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=50.6
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhc-------c--CCCccCCceeeEEeecCCCch-----HHHHHHHHHHHHHHH
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEK-------E--GGEWLQKLKYGVFGLGNRQYE-----HFNKIAKVVDEILAN 66 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~-------~--~~~~l~~~~~avfGlGds~y~-----~f~~~~~~~~~~L~~ 66 (554)
+.+||+++-| ++.+|.-.+.|++++-.. . +...|++++..|++.....|. .......-+...|.-
T Consensus 91 D~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~yl~~il~~ 169 (208)
T PRK13555 91 DKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVNYVTTVLGF 169 (208)
T ss_pred CEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHHHHHHHHHh
Confidence 5789999999 788999999999988732 1 224588999999977334452 223334567778888
Q ss_pred cCCccc
Q 008757 67 QGAKRL 72 (554)
Q Consensus 67 lGa~~~ 72 (554)
+|.+.+
T Consensus 170 ~Gi~~v 175 (208)
T PRK13555 170 WGITNP 175 (208)
T ss_pred cCCCce
Confidence 898653
No 138
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=44.09 E-value=14 Score=32.14 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=25.0
Q ss_pred CCCCcccccCCCCCCCCCeEEEEEEEEEeeCCCCCcccCccchhhhccCCCCcCCCCceeeEEEecCCC
Q 008757 328 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 396 (554)
Q Consensus 328 ~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~~~~~~~~~~~~v~~~~~~F 396 (554)
....|.|||.+..- ..+++.|-|.+. ...|.+|.|..+..+|+. +-|..+.+.|
T Consensus 64 ~p~~R~YTvR~~d~-~~~~l~iDfv~H--------g~~Gpas~WA~~A~pGd~------v~v~gP~g~~ 117 (117)
T PF08021_consen 64 RPVMRTYTVRRFDP-ETGELDIDFVLH--------GDEGPASRWARSARPGDR------VGVTGPRGSF 117 (117)
T ss_dssp --EEEEEE--EEET-T--EEEEEEE----------SS--HHHHHHHH--TT-E------EEEEEEE---
T ss_pred CCCCCCcCEeeEcC-CCCEEEEEEEEC--------CCCCchHHHHhhCCCCCE------EEEeCCCCCC
Confidence 34579999988532 134555443221 112899999999988654 5566676665
No 139
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=43.29 E-value=67 Score=26.27 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=28.5
Q ss_pred EEEEeeeecCCCCCCCcEEEEEEEecC--CCccccCCCeEEEeec
Q 008757 157 SNVAVRKELHTPSSDRSCTHLEFDIAG--TGLTYETGDHVGVYCE 199 (554)
Q Consensus 157 ~~v~~~~~l~~~~~~~~~~~i~~~~~~--~~~~y~~GD~l~i~p~ 199 (554)
+.|+..++++. ++++++|.+++ ..+.|.||.++.|.-+
T Consensus 2 ~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 56788888873 68889998874 2478999999999877
No 140
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=39.95 E-value=80 Score=33.39 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=44.8
Q ss_pred eEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEee-cCCCchHHHHHHHHHHHHHHHcCCccccc
Q 008757 2 KIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP 74 (554)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~~~~~L~~lGa~~~~~ 74 (554)
-+++.++|++.+ ++..++.+.-.+.... ..++..+|||. |.+.= +.+.+.++|+.+|-+-..+
T Consensus 300 ~~vvGsPT~~~~-~~p~i~~~l~~v~~~~----~~~k~~~vfgS~GW~g~-----av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 300 GLVVGSPTINGG-AHPPIQTALGYVLALA----PKNKLAGVFGSYGWSGE-----AVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred eEEEecCcccCC-CCchHHHHHHHHHhcc----CcCceEEEEeccCCCCc-----chHHHHHHHHhcCcEEecc
Confidence 478889999654 5555777777776433 45666888885 33443 6789999999999876655
No 141
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.27 E-value=29 Score=33.02 Aligned_cols=116 Identities=11% Similarity=0.112 Sum_probs=66.0
Q ss_pred CCCeEEEEcccCCCCCCCcHHHHHHHHHcCCcCeEEEEEccCCCCcccchhhhcccHHHHHHHHhCCCEEEEecCCcchH
Q 008757 435 LGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMA 514 (554)
Q Consensus 435 ~~~~~L~~G~R~~~~d~ly~del~~~~~~~~~~~l~~a~Sr~~~~~~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~ 514 (554)
.++++|+-+||.....|++..-+..+.+.+.- ..+++|+|.-..-..+-.++.-+ +.-.-+++-.+|+=|=.....
T Consensus 18 qgkltLl~d~~eT~gsFl~H~~l~~~Lkan~~-~cFlaf~k~fshy~i~~rKlG~~---l~t~k~rgqlvF~dgl~~~~~ 93 (248)
T KOG4723|consen 18 QGKLTLLLDTRETPGSFLFHYYLYHALKANES-TCFLAFSKTFSHYAISMRKLGMD---LKTKKNRGQLVFIDGLSMLFA 93 (248)
T ss_pred CccEEEEeecccCCceeeHHHHHHHHHhcCCc-EEEEEeecchhHHHHHHHHhCCc---eeecccCCcEEEEhhhhhhhC
Confidence 48999999998766689999999988887754 57899998632211111111100 000002455777766411111
Q ss_pred HHHHHHHHH------HHHHcCCCCHHHHHHHHHHHHHCCCeeEeeC
Q 008757 515 RDVHRTLHT------IVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 554 (554)
Q Consensus 515 ~~v~~~L~~------i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 554 (554)
..+.++-.+ .+...++-.-.-.+++.++.++.-+..+|+|
T Consensus 94 ~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~ 139 (248)
T KOG4723|consen 94 PISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDID 139 (248)
T ss_pred ccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeee
Confidence 112222111 1222222233445778888888899999998
No 142
>PRK06934 flavodoxin; Provisional
Probab=39.20 E-value=1.3e+02 Score=29.29 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=48.2
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEee-cCCCch-HHHHHHHHHHHHHHHcCCcccccccc-
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYE-HFNKIAKVVDEILANQGAKRLVPVGL- 77 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGl-Gds~y~-~f~~~~~~~~~~L~~lGa~~~~~~~~- 77 (554)
+.|+++.+.| .|.+|.=.+.|.+.. .++|++++.|-. |-+... .+... .+... +|+.+.+-..
T Consensus 131 D~I~IG~PIW-wg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggsg~g~s~~~i----~~l~~--~a~~v~~Gl~i 196 (221)
T PRK06934 131 DQIFIGYPIW-WYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGSRFSDSLREI----KRLQP--NAQLVTQGLAI 196 (221)
T ss_pred CEEEEEcchh-hccccHHHHHHHHhc-------CCCCCEEEEEEecCCCCccchHHHH----HHHcC--Ccceeccceee
Confidence 4689999999 688999888886644 288999998865 344442 23222 22211 3323333221
Q ss_pred -ccC-C-CCcHhhHHHHHHHH
Q 008757 78 -GDD-D-QCIEDDFSAWRELV 95 (554)
Q Consensus 78 -~d~-~-~~~~~~~~~W~~~l 95 (554)
+++ . ...++++..|++.+
T Consensus 197 ~~~~~~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 197 SRNDVTDDDTPKEIINWLNTL 217 (221)
T ss_pred ecCcccccchHHHHHHHHHHc
Confidence 122 1 12467899998764
No 143
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=39.01 E-value=58 Score=31.97 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=27.8
Q ss_pred cCCCCCC-CcEEEEEEEecCCCccccCCCeEEEeecC
Q 008757 165 LHTPSSD-RSCTHLEFDIAGTGLTYETGDHVGVYCEN 200 (554)
Q Consensus 165 l~~~~~~-~~~~~i~~~~~~~~~~y~~GD~l~i~p~N 200 (554)
++.+++. .++++|+|+.++....|+||.++.|.+++
T Consensus 8 ~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 8 LLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred ecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 4444543 38999999876567899999999998765
No 144
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=34.10 E-value=1.5e+02 Score=28.87 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=48.9
Q ss_pred eEEEEeccCCCCCcCchHHHHHHHHhhccC-CCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 2 KIYVIGCRYGDGEPTDNAARFYKWFTEKEG-GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 2 ~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~-~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
-+||+++-| +|..|.--+...+|+..... ...+.++-++|+|..-... .. .+...+...|..+|+..+
T Consensus 93 gvii~TPEY-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~-g~-ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 93 GQVWCSPER-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ-SF-NAVNILRRLGRWMRMPTI 161 (219)
T ss_pred EEEEeCCcc-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh-HH-HHHHHHHHHHHHCCCccc
Confidence 478999999 88999999999999974311 1248899999987642212 22 245668888889998644
No 145
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=34.05 E-value=31 Score=27.08 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.9
Q ss_pred cccCCCeEEEeecCCH
Q 008757 187 TYETGDHVGVYCENLS 202 (554)
Q Consensus 187 ~y~~GD~l~i~p~N~~ 202 (554)
.|++||.+.|+.+|+-
T Consensus 5 ~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPH 20 (75)
T ss_pred ccCCCCEEEEEEcCCC
Confidence 6999999999999986
No 146
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=33.10 E-value=55 Score=27.78 Aligned_cols=38 Identities=16% Similarity=0.283 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Q 008757 511 KSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGR 548 (554)
Q Consensus 511 ~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 548 (554)
..|...=.+-|.+=+.+.|.++.++|.+|+.+|.++.+
T Consensus 19 ~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 19 AAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44444444455555678899999999999999988765
No 147
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=32.89 E-value=89 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.3
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCeeE
Q 008757 527 EQGSLDSSKAESMVKNLQMTGRYLR 551 (554)
Q Consensus 527 ~~~~~~~~~a~~~~~~l~~~~Ry~~ 551 (554)
+..|++..+|..+|..|+++|+...
T Consensus 23 ~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 23 DALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 3458899999999999999998754
No 148
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=32.65 E-value=65 Score=26.98 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=39.0
Q ss_pred CCceeeEEeecCC---CchHHHHHHHHHHHHHHHcCCccccccccccCCCCcHhhHH
Q 008757 36 QKLKYGVFGLGNR---QYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 89 (554)
Q Consensus 36 ~~~~~avfGlGds---~y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~~~~~~~~~~ 89 (554)
+|++|-+=.+|=. .|+.-..+.+++++.+.+.|+.|++-..+.|...+.+..++
T Consensus 31 sGl~y~~~pm~T~IEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikid~R~dk~~~~~ 87 (97)
T TIGR00106 31 SGLKYELHPMGTLIEGDLDELFEAIKAIHEAVLEKGSDRVYTSIKIDTRTDKHRTLR 87 (97)
T ss_pred cCCCeEecCCccEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCCCCCCHH
Confidence 3555555444432 38888889999999999999999998888888544333333
No 149
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=31.90 E-value=35 Score=30.10 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=35.8
Q ss_pred eeeEEeecCCCc--hHHHHHHHHHHHHHHHcCCccccccccccCCCCcHhhHHHHH
Q 008757 39 KYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 92 (554)
Q Consensus 39 ~~avfGlGds~y--~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~~~~~~~~~~~W~ 92 (554)
+++|+-.||.-+ ..++..+..+.++|++.|.+........|+.....+.+++|.
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~ 56 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEAS 56 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHH
Confidence 578999999765 457778889999999999875443333344333444444443
No 150
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=31.18 E-value=1.2e+02 Score=28.94 Aligned_cols=70 Identities=11% Similarity=-0.075 Sum_probs=45.5
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHH-HhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCcc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKW-FTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKR 71 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~-l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~ 71 (554)
+-|||.++|| .|..+..++.|++. +........+.++-.++|..+-+.--.-......+...+...|...
T Consensus 77 D~iI~gsPvy-~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~ 147 (207)
T COG0655 77 DGIIFGSPVY-FGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIV 147 (207)
T ss_pred CEEEEeCCee-cCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeE
Confidence 3489999999 89999999999998 4422112347777777777666543222134445566666666543
No 151
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=28.83 E-value=1.2e+02 Score=29.29 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=30.2
Q ss_pred eEEEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecC
Q 008757 156 RSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 200 (554)
Q Consensus 156 ~~~v~~~~~l~~~~~~~~~~~i~~~~~~-~~~~y~~GD~l~i~p~N 200 (554)
.++|+..+.++. +++++.|+.+. ..+.|+||.++.|..++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 2 VGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred ceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 457777777764 57888888754 35789999999998654
No 152
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=28.30 E-value=1.6e+02 Score=27.50 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=50.6
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhhccCCCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
+-+||+|+-| +|..|.-.|...+||-.. .+.++..+++|-|-....... +...+...|..+|+..+
T Consensus 69 D~li~~tPeY-n~s~pg~lKnaiD~l~~~----~~~~Kpv~~~~~s~g~~~~~~-a~~~Lr~vl~~~~~~~~ 134 (184)
T COG0431 69 DGLIIATPEY-NGSYPGALKNAIDWLSRE----ALGGKPVLLLGTSGGGAGGLR-AQNQLRPVLSFLGARVI 134 (184)
T ss_pred CEEEEECCcc-CCCCCHHHHHHHHhCCHh----HhCCCcEEEEecCCCchhHHH-HHHHHHHHHHhcCceec
Confidence 3589999999 899999999999999743 478888888877766554443 34667788888888665
No 153
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=27.88 E-value=1.9e+02 Score=25.73 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=41.2
Q ss_pred CCceeeEEeecCC------------------C------chHHHHHHHHHHHHHHHcCCccccccccccCCC---CcHhhH
Q 008757 36 QKLKYGVFGLGNR------------------Q------YEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDF 88 (554)
Q Consensus 36 ~~~~~avfGlGds------------------~------y~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~~~---~~~~~~ 88 (554)
....||.+.+|+- . -.+|-.+++.+...|.++| +|.+.|+... ..-...
T Consensus 46 pp~~~a~lalGS~GR~E~~~~sDqD~alv~~d~~~~~~~~~f~~~a~~~~~~L~~~G----~~~C~g~vmasnp~W~~s~ 121 (138)
T PF03445_consen 46 PPVPFAWLALGSYGRREQTLYSDQDNALVFEDEESEEDRAYFEAFAERLVDALDECG----FPPCPGGVMASNPRWRGSL 121 (138)
T ss_pred CCCCEEEEEECcccccCCCcCccccceeeecCccchhHHHHHHHHHHHHHHHHHHcC----CCCCCCCcCccChhhCcCH
Confidence 3678999988874 1 1369999999999999999 5666665532 334467
Q ss_pred HHHHHHHhH
Q 008757 89 SAWRELVWP 97 (554)
Q Consensus 89 ~~W~~~l~~ 97 (554)
..|.+.+-.
T Consensus 122 ~~W~~~~~~ 130 (138)
T PF03445_consen 122 SEWREQLRR 130 (138)
T ss_pred HHHHHHHHH
Confidence 777766544
No 154
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=27.86 E-value=3.6e+02 Score=25.15 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=57.6
Q ss_pred CeEEEEeccCCCCCcCchHHHHHHHHhh-----ccCCCccCCcee-eEEeecCC--Cch-----HHHHHHHHHHHHHHHc
Q 008757 1 MKIYVIGCRYGDGEPTDNAARFYKWFTE-----KEGGEWLQKLKY-GVFGLGNR--QYE-----HFNKIAKVVDEILANQ 67 (554)
Q Consensus 1 ~~~i~~~sT~g~G~~p~n~~~f~~~l~~-----~~~~~~l~~~~~-avfGlGds--~y~-----~f~~~~~~~~~~L~~l 67 (554)
+.|||..+-| ...+|.-.+.+.+..-. ...+..|+|+++ .++..|.. .|. .|...-.-+...+.-+
T Consensus 57 D~iV~~fP~~-w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~ 135 (176)
T PRK00871 57 DLIVWQHPMQ-WYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYC 135 (176)
T ss_pred CEEEEEcChh-hccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHc
Confidence 5789999999 67788888888776641 112234888876 45556665 342 2333444556666678
Q ss_pred CCccccccccccCCCCcHhhHHHHHHHHhHHHH
Q 008757 68 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 100 (554)
Q Consensus 68 Ga~~~~~~~~~d~~~~~~~~~~~W~~~l~~~l~ 100 (554)
|.+.+-+..........++++++..+...+.|.
T Consensus 136 G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 168 (176)
T PRK00871 136 GLNWLPPFAMHCTFICDDETLEGQARHYKQRLL 168 (176)
T ss_pred CCeEcceEEEeeeccCCHHHHHHHHHHHHHHHH
Confidence 988765554332222234445544444444333
No 155
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=26.79 E-value=43 Score=30.04 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=37.0
Q ss_pred eeeEEeecCCCc---------hHHHHHHHHHHHHHHHcCCccccccccccCCCCcHhhHHHHH
Q 008757 39 KYGVFGLGNRQY---------EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 92 (554)
Q Consensus 39 ~~avfGlGds~y---------~~f~~~~~~~~~~L~~lGa~~~~~~~~~d~~~~~~~~~~~W~ 92 (554)
+++|+-.||.-+ .-++..+..+.++|+++|++...-....|+.....+.+++|.
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~ 64 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV 64 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH
Confidence 688999999655 247777889999999999875543334444444555555553
No 156
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=26.29 E-value=1.3e+02 Score=28.83 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=29.8
Q ss_pred eEEEEeeeecCCCCCCCcEEEEEEEecCCC-ccccCCCeEEEeecC
Q 008757 156 RSNVAVRKELHTPSSDRSCTHLEFDIAGTG-LTYETGDHVGVYCEN 200 (554)
Q Consensus 156 ~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~-~~y~~GD~l~i~p~N 200 (554)
.++|+.++.+++ +++.+.|+.++.. ..|+||.++.|..++
T Consensus 3 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 3 VLRVTEIIQETP-----TVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred eEEEEEEEecCC-----CeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 356777777763 5788888876432 789999999998653
No 157
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=25.82 E-value=64 Score=29.19 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=36.6
Q ss_pred ceeeEEeecCCCch--HHHHHHHHHHHHHHHcCCccccccccccCCCCcHhhHHHH
Q 008757 38 LKYGVFGLGNRQYE--HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 91 (554)
Q Consensus 38 ~~~avfGlGds~y~--~f~~~~~~~~~~L~~lGa~~~~~~~~~d~~~~~~~~~~~W 91 (554)
++++|+-.||..+. -++..+..+.++|++.|++........|+.....+.++.|
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 56 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEW 56 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHH
Confidence 47899999997763 5777788899999999987554433344433334444444
No 158
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=24.98 E-value=1.7e+02 Score=23.32 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=24.0
Q ss_pred CccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 33 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 33 ~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
..+++.+++|+|.|. +++-+...|.+.|+.++
T Consensus 19 ~~~~~~~v~i~G~G~--------~g~~~a~~l~~~~~~~v 50 (86)
T cd05191 19 KSLKGKTVVVLGAGE--------VGKGIAKLLADEGGKKV 50 (86)
T ss_pred CCCCCCEEEEECCCH--------HHHHHHHHHHHcCCCEE
Confidence 347899999999994 56667777778765544
No 159
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.19 E-value=98 Score=28.70 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=17.9
Q ss_pred hcccHHHHHHHHhCCCEEEEecCCc
Q 008757 487 MMEKSSDIWNMLSEGAYLYVCGDAK 511 (554)
Q Consensus 487 l~~~~~~v~~~l~~~~~iyvCG~~~ 511 (554)
+..-+..+.+.+..+..|.+||+..
T Consensus 27 I~~aa~~i~~~l~~G~Kvl~cGNGg 51 (176)
T COG0279 27 IERAAQLLVQSLLNGNKVLACGNGG 51 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCc
Confidence 4444455666667899999999943
No 160
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=24.12 E-value=1.1e+02 Score=29.21 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 32 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 32 ~~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
...+++++++|.|+|. +++.+-+.|.+.|++-+
T Consensus 23 ~~~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 23 TDSLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 3458999999999994 67888899999998654
No 161
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=22.98 E-value=78 Score=30.67 Aligned_cols=31 Identities=39% Similarity=0.488 Sum_probs=25.5
Q ss_pred ccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 34 WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 34 ~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
.+.+++++|.|+|+ +++.+-+.|.++|++.+
T Consensus 20 ~l~g~~vaIqGfGn--------VG~~~a~~L~~~G~~vV 50 (217)
T cd05211 20 SLEGLTVAVQGLGN--------VGWGLAKKLAEEGGKVL 50 (217)
T ss_pred CcCCCEEEEECCCH--------HHHHHHHHHHHcCCEEE
Confidence 48999999999997 56667778888898665
No 162
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=22.59 E-value=1.2e+02 Score=22.87 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=21.0
Q ss_pred cCCCccccCCCeEEEeecCCHHHHHHHHHHcC
Q 008757 182 AGTGLTYETGDHVGVYCENLSETVEEALSLLG 213 (554)
Q Consensus 182 ~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~ 213 (554)
++.+...++||.|.|... ++.++++.+.||
T Consensus 42 p~~~~~l~~gD~l~v~g~--~~~i~~~~~~~g 71 (71)
T PF02080_consen 42 PDGDTVLQAGDILIVVGD--PEDIERFRELFG 71 (71)
T ss_dssp --TT-BE-TTEEEEEEEE--HHHHHHHHHHT-
T ss_pred CCCCCEECCCCEEEEEEC--HHHHHHHHHhhC
Confidence 445789999999999887 566888887765
No 163
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=22.06 E-value=1.9e+02 Score=28.24 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=31.3
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCC
Q 008757 155 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENL 201 (554)
Q Consensus 155 ~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~ 201 (554)
..++|+..++++. +++.|+|+.+ ..+.|+||.++.|..++.
T Consensus 5 ~~~~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 5 ENMKIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred eEEEEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 3567778887763 6788888843 568899999999987654
No 164
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=21.60 E-value=82 Score=29.25 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=26.6
Q ss_pred CccCCceeeEEeecCCCchHHHHHHHHHHHHHHHcCCccc
Q 008757 33 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 72 (554)
Q Consensus 33 ~~l~~~~~avfGlGds~y~~f~~~~~~~~~~L~~lGa~~~ 72 (554)
..+.+.+++|+|+|+ .++.+.++|+.+|++-+
T Consensus 32 ~~l~g~tvgIiG~G~--------IG~~vA~~l~~fG~~V~ 63 (178)
T PF02826_consen 32 RELRGKTVGIIGYGR--------IGRAVARRLKAFGMRVI 63 (178)
T ss_dssp S-STTSEEEEESTSH--------HHHHHHHHHHHTT-EEE
T ss_pred cccCCCEEEEEEEcC--------CcCeEeeeeecCCceeE
Confidence 358999999999996 78999999999999654
No 165
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=21.53 E-value=31 Score=19.24 Aligned_cols=10 Identities=50% Similarity=1.128 Sum_probs=7.1
Q ss_pred CccchhHHHH
Q 008757 413 TGLAPFRGFL 422 (554)
Q Consensus 413 tGIAPf~s~l 422 (554)
.|++|||+-.
T Consensus 6 ~gftpfrgkf 15 (19)
T PF06753_consen 6 PGFTPFRGKF 15 (19)
T ss_pred CCCCcccccc
Confidence 5888888643
No 166
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=21.52 E-value=2.2e+02 Score=27.26 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=30.6
Q ss_pred eEEEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecC
Q 008757 156 RSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 200 (554)
Q Consensus 156 ~~~v~~~~~l~~~~~~~~~~~i~~~~~~-~~~~y~~GD~l~i~p~N 200 (554)
.++|+..+.+++ +++.|.|+.++ ....|+||.++.|..++
T Consensus 3 ~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 3 EATVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred eEEEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 467777777764 58888888765 35789999999998654
No 167
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.23 E-value=1.4e+02 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=15.3
Q ss_pred hcccHHHHHHHHhCCCEEEEecCC
Q 008757 487 MMEKSSDIWNMLSEGAYLYVCGDA 510 (554)
Q Consensus 487 l~~~~~~v~~~l~~~~~iyvCG~~ 510 (554)
|.+-.+.+.+.+.+++.||+||+.
T Consensus 21 i~~aa~~i~~~~~~gg~i~~~G~G 44 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIFVCGNG 44 (138)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEST
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCc
Confidence 344445556666889999999984
No 168
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=21.21 E-value=2.6e+02 Score=27.09 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=31.2
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCC-C-ccccCCCeEEEeecCC
Q 008757 155 CRSNVAVRKELHTPSSDRSCTHLEFDIAGT-G-LTYETGDHVGVYCENL 201 (554)
Q Consensus 155 ~~~~v~~~~~l~~~~~~~~~~~i~~~~~~~-~-~~y~~GD~l~i~p~N~ 201 (554)
..++|+....++. ++++|+|+.++. . +.|+||+++.|..+++
T Consensus 7 ~~~~v~~~~~~s~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 7 RPFVVARKVAESE-----DITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEEEEcCC-----CeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 3567777777763 588899887643 2 7899999999996653
Done!