Query 008758
Match_columns 554
No_of_seqs 192 out of 695
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 16:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 8.3E-67 1.8E-71 564.1 42.1 397 141-544 149-569 (577)
2 PF04515 Choline_transpo: Plas 100.0 1.8E-59 3.9E-64 489.2 32.6 311 216-526 8-333 (334)
3 PF01102 Glycophorin_A: Glycop 47.7 20 0.00043 31.9 3.2 27 209-235 69-95 (122)
4 PF10110 GPDPase_memb: Membran 47.5 85 0.0018 28.6 7.6 32 413-444 105-136 (149)
5 PF03788 LrgA: LrgA family; I 44.7 54 0.0012 27.8 5.3 30 228-259 31-60 (96)
6 PF05568 ASFV_J13L: African sw 38.1 53 0.0012 29.9 4.4 39 210-248 35-73 (189)
7 PF11710 Git3: G protein-coupl 25.7 5.9E+02 0.013 24.5 9.8 20 214-233 180-199 (201)
8 PF12273 RCR: Chitin synthesis 24.9 46 0.001 29.7 1.8 9 225-233 20-28 (130)
9 PRK11056 hypothetical protein; 20.4 6.1E+02 0.013 22.5 8.7 26 178-203 40-65 (120)
10 TIGR02220 phg_TIGR02220 phage 20.0 94 0.002 25.4 2.5 38 404-448 2-39 (77)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.3e-67 Score=564.14 Aligned_cols=397 Identities=25% Similarity=0.426 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhh--hccCC--C--CCChhh----HHHH-H
Q 008758 141 IWVLVITLILSVPICFLLLLLLKHYTKQLVYVALPFFVIVPTFINVYWFVAC--TVSSS--C--SDSLPL----VYRI-L 209 (554)
Q Consensus 141 ~~~l~~~~~is~~ls~~~l~llr~~a~~lv~~~i~~~~~~~~~~~i~~~~~~--~~~~~--~--~~~~~~----~~~~-~ 209 (554)
|..+...+.++.+++++++.++|++++.++|..+++++.+++......+..+ ..... . ...... ...+ .
T Consensus 149 w~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 228 (577)
T KOG1362|consen 149 WYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLD 228 (577)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHH
Confidence 7888899999999999999999999999999999888776665542222222 11111 0 011001 1111 2
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCeeeccC
Q 008758 210 VLVFVFLIIG-VLVWIFVANWHRIELTVQIIGIASDALSKNLGLFVALPLLTLGL-VVYYAPIVVFLVFARLNGKIVPKE 287 (554)
Q Consensus 210 ~~~i~~~i~~-i~l~~~~~~r~rI~~a~~il~~a~~~l~~~~~l~lv~p~~~~~~-~~~~~~~~~~~v~~~~~G~~~~~~ 287 (554)
..++++.++. +.+++.+.+|+||+++++++|+|+|++.+.|+++ +.|..+++. .++++.|+...+++++.| ++.
T Consensus 229 ~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~-~~p~~~~~v~~~~i~~wv~~~~~l~t~~---~~~ 304 (577)
T KOG1362|consen 229 AVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTL-FPPALTFFVLLLFISLWVFVALFLVTSG---PNS 304 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccc
Confidence 2455555555 4667778899999999999999999999999987 457887665 457778988888888877 221
Q ss_pred CCCcceeEEccCCchhHHHHHHHHH-HHHHHHHHhhccchhheeeeeEEeecCCC-CCChhhHHHHHHHhhcccchhhhh
Q 008758 288 SNGEYKCVWKQDSWVPAYFALAILT-MLWSLTSMVEAKAYVISGTIAQWYFSKED-TKPKRSIRSSLRNAFGPSSGSICL 365 (554)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~f~-~~Wt~~fl~~~~~~tvAg~va~WYF~~~~-~~~~~~~~~s~~ra~~~sfGSi~~ 365 (554)
.+|.. |++..+++. ..++++++. ++|++||+.|++|+++||++++|||++++ +.|..|+..|++|+++||+||+|+
T Consensus 305 ~gg~~-~~~~~~~~~-~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yhlGSi~~ 382 (577)
T KOG1362|consen 305 EGGCA-CTYSGGSLR-ILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYHLGSICF 382 (577)
T ss_pred CCCce-eeccCCcch-hHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHhccchhh
Confidence 11222 677766633 333445555 99999999999999999999999999985 889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhccCc------chhHHHHHHHHHHHHHHHHHhcchhhhhhhhccCchhhHHHHHHHHHHHhc
Q 008758 366 SGLLICMVRIVRAAVDSARQEDV------PGFVNLILRCCVNALLSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRN 439 (554)
Q Consensus 366 GSLivaiv~~lR~il~~~~~~~~------~~~~~~~~~Ccl~cle~~l~~~nk~Ayi~iAi~G~~F~~Sak~a~~L~~~n 439 (554)
|||++++++++|.++|+++++.+ .+++.||++||+||+|++++|+|||||+++|||||+||+|||+||+|++||
T Consensus 383 GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N 462 (577)
T KOG1362|consen 383 GSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN 462 (577)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH
Confidence 99999999999999999987543 258999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccccCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 008758 440 LLSAVFVETVSTRLLAGIIFVISAVYTIAVCAILKGVRDLGIYSYLVAALAFVLL-IFVLGYFVHVLDNVIETVYVCYAI 518 (554)
Q Consensus 440 ~~~~~~~~~i~~~iL~~~~~~~s~~~~~~~~~i~~~~~~~~~~~~~~~ll~~~i~-~~v~~~f~sv~~~~vdTifvCf~e 518 (554)
..+....|.++++++++++++.+...+..++.++.+..+. .++|.+++++++++ |+|+++|+++++|+|||+|+||+|
T Consensus 463 v~~vv~~d~vs~~llflgk~l~~~~~g~~g~~~l~~~~~~-l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~e 541 (577)
T KOG1362|consen 463 VLRVVDVDLVSDFLLFLGKLLGAIGSGVAGIWLLIGRKDV-LYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAE 541 (577)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEe
Confidence 9999999999999997777777777777776666543322 47899999999998 999999999999999999999999
Q ss_pred ccccCCCC--ChhHHHHHHhCCcCCCCC
Q 008758 519 DRDRGEVY--KPEVHEVYVHLPISRNHR 544 (554)
Q Consensus 519 D~e~~~~~--~pe~~~~~~~~~~~~~~~ 544 (554)
|||.||++ +|+.++..-..+.+|+.+
T Consensus 542 D~e~n~gs~~~p~~~~~~l~~~~~~~~~ 569 (577)
T KOG1362|consen 542 DPESNDGSPEKPQFMSEQLLEILGRSNK 569 (577)
T ss_pred cHhhcCCCCCcceeeeHHHHHhcccccc
Confidence 99999988 676555554444333333
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=1.8e-59 Score=489.19 Aligned_cols=311 Identities=24% Similarity=0.477 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeeccCCCC-----
Q 008758 216 LIIGVLVWIFVANWHRIELTVQIIGIASDALSKNLGLFVALPLLTLGLVVYYAPIVVFLVFARLNGKIVPKESNG----- 290 (554)
Q Consensus 216 ~i~~i~l~~~~~~r~rI~~a~~il~~a~~~l~~~~~l~lv~p~~~~~~~~~~~~~~~~~v~~~~~G~~~~~~~~~----- 290 (554)
+++++.+++++++||||+++++++|+|++++++||++++++++..++.+++.++|+...++++++|+.+.++.+.
T Consensus 8 i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~~~~~~~ 87 (334)
T PF04515_consen 8 ILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCNLPFSSG 87 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcccc
Confidence 334456667788999999999999999999999999997755555555678889998888999999876643322
Q ss_pred -cceeEEccCCchhHHHHHHHHHHHHHHHHHhhccchhheeeeeEEeecCCC-CCChhhHHHHHHHhhcccchhhhhhhH
Q 008758 291 -EYKCVWKQDSWVPAYFALAILTMLWSLTSMVEAKAYVISGTIAQWYFSKED-TKPKRSIRSSLRNAFGPSSGSICLSGL 368 (554)
Q Consensus 291 -~~~~~~~~~~~~~~~~~~~~f~~~Wt~~fl~~~~~~tvAg~va~WYF~~~~-~~~~~~~~~s~~ra~~~sfGSi~~GSL 368 (554)
.++++++.+++...+.++++|+++|+++|++|++|+++||++++|||++++ ++|+.|+.+|++|+++|||||+|+|||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GSi~~gSl 167 (334)
T PF04515_consen 88 SISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGSICFGSL 167 (334)
T ss_pred cccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHHHHHHHH
Confidence 124667777888888889999999999999999999999999999999986 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCc-c-----hhHHHHHHHHHHHHHHHHHhcchhhhhhhhccCchhhHHHHHHHHHHHhcchh
Q 008758 369 LICMVRIVRAAVDSARQEDV-P-----GFVNLILRCCVNALLSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRNLLS 442 (554)
Q Consensus 369 ivaiv~~lR~il~~~~~~~~-~-----~~~~~~~~Ccl~cle~~l~~~nk~Ayi~iAi~G~~F~~Sak~a~~L~~~n~~~ 442 (554)
++++++++|.++++++++.+ + +++.+|++||++|+|+++||+||+||+++||||++||+|||++++|++||+.+
T Consensus 168 ivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~L~~~n~~~ 247 (334)
T PF04515_consen 168 IVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFELIKRNGLR 247 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhchH
Confidence 99999999999999988654 1 37788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008758 443 AVFVETVSTRLLAGIIFVISAVYTIAVCAILKGVR--DLGIYSYLVAALAFVLLIFVLGYFVHVLDNVIETVYVCYAIDR 520 (554)
Q Consensus 443 ~~~~~~i~~~iL~~~~~~~s~~~~~~~~~i~~~~~--~~~~~~~~~~ll~~~i~~~v~~~f~sv~~~~vdTifvCf~eD~ 520 (554)
+..+|++++.++....+.+++.++.++|.++...+ +...+++.+++++++++|.++++|++++++++||+|+||+|||
T Consensus 248 ~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~~~vdti~vc~~~d~ 327 (334)
T PF04515_consen 248 AIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYSSAVDTIFVCYAEDP 327 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999977777778888888888876432 2234567788889999999999999999999999999999999
Q ss_pred ccCCCC
Q 008758 521 DRGEVY 526 (554)
Q Consensus 521 e~~~~~ 526 (554)
|.++.+
T Consensus 328 e~~~~~ 333 (334)
T PF04515_consen 328 EMNKND 333 (334)
T ss_pred hhhhcC
Confidence 997654
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=47.67 E-value=20 Score=31.95 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008758 209 LVLVFVFLIIGVLVWIFVANWHRIELT 235 (554)
Q Consensus 209 ~~~~i~~~i~~i~l~~~~~~r~rI~~a 235 (554)
.+.++++.++++++++.|++|||++..
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344445555555566666677766653
No 4
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=47.49 E-value=85 Score=28.60 Aligned_cols=32 Identities=9% Similarity=0.348 Sum_probs=28.0
Q ss_pred hhhhhhhccCchhhHHHHHHHHHHHhcchhHH
Q 008758 413 FTINFAAITGEAYCSSARMTYELLKRNLLSAV 444 (554)
Q Consensus 413 ~Ayi~iAi~G~~F~~Sak~a~~L~~~n~~~~~ 444 (554)
++.-.+.+.++++.+|-|++|++.++|.++..
T Consensus 105 f~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~~ 136 (149)
T PF10110_consen 105 FVLPLIVLENKSFKEALKESWQLTKGRFWRIL 136 (149)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCcHHHHH
Confidence 45667789999999999999999999988864
No 5
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=44.66 E-value=54 Score=27.82 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008758 228 NWHRIELTVQIIGIASDALSKNLGLFVALPLL 259 (554)
Q Consensus 228 ~r~rI~~a~~il~~a~~~l~~~~~l~lv~p~~ 259 (554)
.+|+++. +-++.+++.+-+|.+++++++..
T Consensus 31 ~~~~vk~--~~i~~~a~~Ll~~m~lfFvPa~V 60 (96)
T PF03788_consen 31 MFKIVKL--EWIEPAANFLLKNMALFFVPAGV 60 (96)
T ss_pred HcCCccH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788877 88999999999999999775443
No 6
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=38.12 E-value=53 Score=29.88 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 008758 210 VLVFVFLIIGVLVWIFVANWHRIELTVQIIGIASDALSK 248 (554)
Q Consensus 210 ~~~i~~~i~~i~l~~~~~~r~rI~~a~~il~~a~~~l~~ 248 (554)
+.+|+.+++.++++++||.+++-+.++++-|+..+++.-
T Consensus 35 LiaIvVliiiiivli~lcssRKkKaaAAi~eediQfinp 73 (189)
T PF05568_consen 35 LIAIVVLIIIIIVLIYLCSSRKKKAAAAIEEEDIQFINP 73 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhcccccCc
Confidence 445555556667777888888888888888888776643
No 7
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=25.72 E-value=5.9e+02 Score=24.47 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 008758 214 VFLIIGVLVWIFVANWHRIE 233 (554)
Q Consensus 214 ~~~i~~i~l~~~~~~r~rI~ 233 (554)
.+.+..++..+++.+|+|++
T Consensus 180 ~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 180 IFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHhhhhc
Confidence 44444556666777888876
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.93 E-value=46 Score=29.70 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=4.3
Q ss_pred HHHhhhhHH
Q 008758 225 FVANWHRIE 233 (554)
Q Consensus 225 ~~~~r~rI~ 233 (554)
++..|||.+
T Consensus 20 ~~~~rRR~r 28 (130)
T PF12273_consen 20 YCHNRRRRR 28 (130)
T ss_pred HHHHHHHhh
Confidence 333455554
No 9
>PRK11056 hypothetical protein; Provisional
Probab=20.38 E-value=6.1e+02 Score=22.48 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCChh
Q 008758 178 VIVPTFINVYWFVACTVSSSCSDSLP 203 (554)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (554)
+++.+.+++|.++..|.+.+..++.+
T Consensus 40 PlIaLvLavycLyQ~Yl~~~m~eg~P 65 (120)
T PRK11056 40 PLIALVLAVYCLHQRYLNRPMPEGLP 65 (120)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCh
Confidence 45556667788887787766555443
No 10
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=19.99 E-value=94 Score=25.36 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=29.5
Q ss_pred HHHHHhcchhhhhhhhccCchhhHHHHHHHHHHHhcchhHHHHHh
Q 008758 404 LSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (554)
Q Consensus 404 e~~l~~~nk~Ayi~iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~~ 448 (554)
+.+++|+|+.+ |+.|-.+++.+.++++.+.-+-...+.
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR~~eg~~~~d 39 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKARWNEGYTLED 39 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHHHHcCCCHHH
Confidence 46789999985 999999999999999887544444444
Done!