Query 008758
Match_columns 554
No_of_seqs 192 out of 695
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fz4_A Putative arsenate reduc 12.9 53 0.0018 27.6 0.6 30 417-446 4-33 (120)
2 3f0i_A Arsenate reductase; str 12.5 92 0.0032 26.0 2.0 31 417-447 5-35 (119)
3 2lqo_A Putative glutaredoxin R 12.3 50 0.0017 26.4 0.2 28 418-445 6-33 (92)
4 3rdw_A Putative arsenate reduc 11.9 95 0.0033 26.0 1.9 29 418-446 7-35 (121)
5 3l78_A Regulatory protein SPX; 11.6 65 0.0022 26.9 0.8 29 418-446 2-30 (120)
6 3r45_A Histone H3-like centrom 11.0 54 0.0018 29.1 0.0 36 1-39 1-36 (156)
7 2juy_A Neopetrosiamide A; amph 10.8 66 0.0023 19.2 0.3 10 58-67 11-21 (28)
8 3gkx_A Putative ARSC family re 10.5 98 0.0033 25.9 1.5 30 418-447 6-35 (120)
9 1rw1_A Conserved hypothetical 9.8 1E+02 0.0034 25.3 1.3 30 418-447 2-31 (114)
10 1s3c_A Arsenate reductase; ARS 9.6 1.3E+02 0.0045 25.9 2.0 30 418-447 4-33 (141)
No 1
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=12.86 E-value=53 Score=27.55 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=25.5
Q ss_pred hhhccCchhhHHHHHHHHHHHhcchhHHHH
Q 008758 417 FAAITGEAYCSSARMTYELLKRNLLSAVFV 446 (554)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~~n~~~~~~~ 446 (554)
++-|||.+-|..+|+|.+++++++...-..
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~~~~ 33 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDYDAI 33 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCceEEE
Confidence 467899999999999999999998766443
No 2
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=12.45 E-value=92 Score=25.99 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.1
Q ss_pred hhhccCchhhHHHHHHHHHHHhcchhHHHHH
Q 008758 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (554)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~ 447 (554)
.+-+||.+-|..+|+|.+++++++...-..|
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~d 35 (119)
T 3f0i_A 5 SVVIYHNPKCSKSRETLALLENQGIAPQVIK 35 (119)
T ss_dssp CCEEECCTTCHHHHHHHHHHHHTTCCCEEEC
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCceEEEE
Confidence 4679999999999999999999997665443
No 3
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=12.31 E-value=50 Score=26.36 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=22.3
Q ss_pred hhccCchhhHHHHHHHHHHHhcchhHHH
Q 008758 418 AAITGEAYCSSARMTYELLKRNLLSAVF 445 (554)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~ 445 (554)
|-||+++.|.-++++-+++.++++....
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~gi~y~~ 33 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTANRIAYDE 33 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHTTCCCEE
T ss_pred EEEEcCCCCHhHHHHHHHHHhcCCceEE
Confidence 4578888888888888899999877543
No 4
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=11.92 E-value=95 Score=25.98 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=25.0
Q ss_pred hhccCchhhHHHHHHHHHHHhcchhHHHH
Q 008758 418 AAITGEAYCSSARMTYELLKRNLLSAVFV 446 (554)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~ 446 (554)
+-|||.+-|..+|+|.+++++++...-..
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~ 35 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITPQVV 35 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCCEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 56999999999999999999998765443
No 5
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=11.63 E-value=65 Score=26.91 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=24.5
Q ss_pred hhccCchhhHHHHHHHHHHHhcchhHHHH
Q 008758 418 AAITGEAYCSSARMTYELLKRNLLSAVFV 446 (554)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~ 446 (554)
+-+||++-|..+++|-+++.+++...-..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~~ 30 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARAWLNRHDVVFQEH 30 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 45899999999999999999998766443
No 6
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=10.96 E-value=54 Score=29.14 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=0.0
Q ss_pred CCCCCCCCCcccccccCCCCCCCCccCCCCCCCCCCCCC
Q 008758 1 MGSSEEDPNKLVCFYESSSSPSQPLLIKPTSPIPEPTTP 39 (554)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (554)
||++. .-..+.++..+ ..+..| =.||..|.+.+|+|
T Consensus 1 ~~~~~-~~~~~~~~~~~-~~~~~~-~~~~~~~~r~~~~~ 36 (156)
T 3r45_A 1 MGSSH-HHHHHSQDPNS-MGPRRR-SRKPEAPRRRSPSP 36 (156)
T ss_dssp ---------------------------------------
T ss_pred CCccc-ccccccCCCCC-CCCccc-CcCCCCCCCCCCCC
Confidence 67775 44445555555 444444 34566666666644
No 7
>2juy_A Neopetrosiamide A; amphipathic, antitumor protein; HET: SME; NMR {Neopetrosia SP}
Probab=10.79 E-value=66 Score=19.23 Aligned_cols=10 Identities=50% Similarity=1.139 Sum_probs=6.9
Q ss_pred cCCC-CCccch
Q 008758 58 NYGP-RPFKDI 67 (554)
Q Consensus 58 ~~g~-R~~~D~ 67 (554)
.-|| |+|+|.
T Consensus 11 dcgpnrpcrdt 21 (28)
T 2juy_A 11 DCGPNRPCRDT 21 (28)
T ss_dssp TSCTTSCCEEE
T ss_pred ecCCCCccccc
Confidence 3455 888885
No 8
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=10.46 E-value=98 Score=25.87 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=25.5
Q ss_pred hhccCchhhHHHHHHHHHHHhcchhHHHHH
Q 008758 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (554)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~ 447 (554)
+-|||.+-|..+|+|-+++++++...-..|
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~d 35 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEYTNRL 35 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHcCCceEEEe
Confidence 568999999999999999999997765443
No 9
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=9.81 E-value=1e+02 Score=25.34 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=24.4
Q ss_pred hhccCchhhHHHHHHHHHHHhcchhHHHHH
Q 008758 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (554)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~ 447 (554)
+-+||++-|..+++|-+++++++...-..|
T Consensus 2 i~iY~~~~C~~C~kak~~L~~~gi~~~~~d 31 (114)
T 1rw1_A 2 YVLYGIKACDTMKKARTWLDEHKVAYDFHD 31 (114)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHCCCceEEEe
Confidence 348999999999999999999987764433
No 10
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=9.56 E-value=1.3e+02 Score=25.91 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=25.3
Q ss_pred hhccCchhhHHHHHHHHHHHhcchhHHHHH
Q 008758 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (554)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~~n~~~~~~~~ 447 (554)
+-|||.+-|..+|+|.+++++++...-..|
T Consensus 4 itiY~~p~C~~crkak~~L~~~gi~~~~id 33 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMIRNSGTEPTIIL 33 (141)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCCEEEC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCEEEEE
Confidence 458999999999999999999987764443
Done!