Query 008760
Match_columns 554
No_of_seqs 150 out of 934
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 16:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 4E-157 8E-162 1253.0 35.9 536 11-552 40-577 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 1E-150 2E-155 1255.4 47.0 524 19-552 1-528 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 2E-106 4E-111 911.4 41.9 500 25-552 1-512 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 3E-101 6E-106 866.7 31.1 482 41-552 1-492 (624)
5 TIGR00733 putative oligopeptid 100.0 5.1E-48 1.1E-52 428.0 31.3 420 41-551 1-451 (591)
6 COG1297 Predicted membrane pro 100.0 5.5E-31 1.2E-35 281.6 22.7 425 37-551 10-475 (624)
7 PF03169 OPT: OPT oligopeptide 82.0 28 0.0006 40.0 14.6 168 42-229 354-548 (624)
8 COG0628 yhhT Predicted permeas 76.5 8.1 0.00018 41.0 7.6 156 376-544 164-321 (355)
9 PF01594 UPF0118: Domain of un 51.0 92 0.002 32.1 9.4 87 461-549 221-316 (327)
10 TIGR02872 spore_ytvI sporulati 47.0 1.9E+02 0.004 29.9 11.0 39 510-548 286-328 (341)
11 PRK10983 putative inner membra 43.7 3.1E+02 0.0067 29.4 12.2 43 506-548 287-333 (368)
12 PF03606 DcuC: C4-dicarboxylat 41.7 96 0.0021 34.4 8.2 91 416-518 251-342 (465)
13 PF13829 DUF4191: Domain of un 40.0 73 0.0016 31.9 6.2 45 413-462 24-68 (224)
14 PRK12287 tqsA pheromone autoin 37.8 2.6E+02 0.0056 29.5 10.5 48 502-549 266-318 (344)
15 TIGR02106 cyd_oper_ybgT cyd op 31.3 55 0.0012 22.4 2.5 18 46-63 5-22 (30)
16 PRK14749 hypothetical protein; 29.3 59 0.0013 22.1 2.4 18 46-63 5-22 (30)
17 PF08173 YbgT_YccB: Membrane b 28.9 64 0.0014 21.7 2.5 18 46-63 5-22 (28)
18 PHA02132 hypothetical protein 28.8 67 0.0014 26.3 3.1 30 523-552 41-70 (86)
19 PF07907 YibE_F: YibE/F-like p 22.5 6.2E+02 0.013 25.7 9.6 123 417-543 50-185 (244)
20 TIGR00733 putative oligopeptid 21.8 5.5E+02 0.012 29.5 10.1 103 445-548 2-112 (591)
21 PRK10420 L-lactate permease; P 21.0 6.6E+02 0.014 28.7 10.4 57 477-546 445-501 (551)
22 PRK10582 cytochrome o ubiquino 20.6 2.9E+02 0.0062 24.6 5.9 49 40-89 11-59 (109)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-157 Score=1253.01 Aligned_cols=536 Identities=58% Similarity=1.081 Sum_probs=522.5
Q ss_pred CCCCCCCCCCCCchhhhhhcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHhHHHHHh
Q 008760 11 ENPNGDSTEERCPIEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMA 90 (554)
Q Consensus 11 ~~~~~~~~~~~sp~~evr~~v~~~Ddp~~p~~T~Ra~~lG~~~~~i~~~~n~~f~lr~~~~~~~~~~~~ll~~~~g~~~a 90 (554)
.||++++++|||||||||+.||++|||++|++|||+|++|++.|++++++||+|++|.++++++.+++|+++||+||+||
T Consensus 40 ~~e~~~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma 119 (761)
T KOG2262|consen 40 DDENELEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMA 119 (761)
T ss_pred cccccccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHH
Confidence 44455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCceee-ecccccccCCCCCCccchheeeeeccccccccccccchhhHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Q 008760 91 RILPNKEFQ-VLGWRFSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQILGY 169 (554)
Q Consensus 91 ~~lP~~~~~-~~~~~~~lNpgpf~~KEh~~i~imas~a~~~~~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~q~lG~ 169 (554)
|+||+|+++ .++|+|+|||||||.|||++|+++||++ +|.+|++.+|.+|++||++++++++++++++++|++||
T Consensus 120 ~~lP~~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~----sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGy 195 (761)
T KOG2262|consen 120 KTLPTWKFGLGGRWSFSLNPGPFNVKEHVLITIFANIG----SGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGY 195 (761)
T ss_pred HhCCceeeecCcceEEEeCCCCCcchheeeeehhhhcc----CcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcc
Confidence 999999999 5889999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHhhhccceeeccCCCCCCchHHHHHHHHHhhcccCccc-ccchHHHHHHHHHHHHHHHhhcccccccccccchhhhccC
Q 008760 170 GWAGMLRRYLVDPVEMWWPSNLAQVSLFRALHEKESKSK-GLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWP 248 (554)
Q Consensus 170 g~Ag~lR~~lV~p~~l~wPs~lat~~l~~sLh~~~~~~~-~~sr~r~f~~~f~~~f~~~~~P~~~~p~L~~~~~~cwi~p 248 (554)
|+||++||++|+|++|.||++|++++||++||+++++++ +++|+|||.++|.+||+|||+|+|+||.|+++||.||+.|
T Consensus 196 GwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P 275 (761)
T KOG2262|consen 196 GWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWP 275 (761)
T ss_pred cHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEecc
Confidence 999999999999999999999999999999999988766 5999999999999999999999999999999999999999
Q ss_pred CccceeeccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCchhcc
Q 008760 249 HSITAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLF 328 (554)
Q Consensus 249 ~n~~~~~lfG~~~GlGl~~~tfDWs~i~~~~gspl~~P~~~~~n~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~f 328 (554)
+|.+++|||||.+|||++|++|||++|++|+||||..|+++.+|.++|+++.++|+.|++||+ |.|+++++|+.|+++|
T Consensus 276 ~s~~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~-n~~~a~~fPI~Ss~lf 354 (761)
T KOG2262|consen 276 SSITANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWT-NTYDAKYFPIFSSSLF 354 (761)
T ss_pred ccHHHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhc-cceecceeceecCcce
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccCCceeeeeeecCCCCCCChhhHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccCcchhhh
Q 008760 329 TSSGHKYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHAR 408 (554)
Q Consensus 329 d~~G~~Y~~s~il~~~~~~~~~~y~~~sp~~l~~~~~l~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~D~h~~ 408 (554)
|++|++||+++|+|+|+++|.+|||+|||+|+++.++++||++||+++|.++|++|+|+||||++.|++. ++++|+|.|
T Consensus 355 ~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~-~k~~DiHtr 433 (761)
T KOG2262|consen 355 DHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAF-NKKMDIHTR 433 (761)
T ss_pred ecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhcc-ccCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998866 558899999
Q ss_pred hhhccCCCChHHHHHHHHHHHHhhheEEeeecCCccchHHHHHHHHHHHHHHHhhheeeEeecCCCcchhHHHHhhhhhc
Q 008760 409 LMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYV 488 (554)
Q Consensus 409 lm~~y~evP~wwy~~~~v~s~~l~i~~~~~~~~~~~lp~w~~llal~la~v~~i~~~~~~a~Tg~~~~l~~i~qli~G~~ 488 (554)
+||||||||+|||++++++++++++++|+.|+++.|+|||++++|+++++++.+|.|+++|+||++|++|+++|+|.||+
T Consensus 434 lMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~ 513 (761)
T KOG2262|consen 434 LMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYI 513 (761)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhh
Confidence 99999999999999999999999999999998777999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008760 489 LPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQVLVAQKSCIFLVLLTYRQ 552 (554)
Q Consensus 489 ~pG~~~anm~f~~~~~~~~~qa~~l~~DlKlG~y~kipPR~~f~aQliGtivg~~v~v~~~~~~ 552 (554)
.||||+|||.||.||+.++.||+++++|+|+|||||+|||.||.+|++||+++++|++++.-.+
T Consensus 514 ~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~ 577 (761)
T KOG2262|consen 514 YPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWL 577 (761)
T ss_pred cCCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987544
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=9.6e-151 Score=1255.36 Aligned_cols=524 Identities=36% Similarity=0.723 Sum_probs=510.3
Q ss_pred CCCCchhhhhhcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHhHHHHHhhhcCCcee
Q 008760 19 EERCPIEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEF 98 (554)
Q Consensus 19 ~~~sp~~evr~~v~~~Ddp~~p~~T~Ra~~lG~~~~~i~~~~n~~f~lr~~~~~~~~~~~~ll~~~~g~~~a~~lP~~~~ 98 (554)
||||||||||++|+++|||++|++|+|+|++|++++++++++||+|++|+|+++++++++||++||+||+|+|++|++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCCCCCccchheeeeeccccccccccccchhhHHHHHHHHhcCCccHHHHHHHHHHHHHhhhHHhhhccce
Q 008760 99 QVLGWRFSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRY 178 (554)
Q Consensus 99 ~~~~~~~~lNpgpf~~KEh~~i~imas~a~~~~~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~q~lG~g~Ag~lR~~ 178 (554)
+++|+||+|||||||+|||+++|+||+++ .+.+|+++++.+|++||++++++++++++++++|++|+|+||++||+
T Consensus 81 ~~~g~~~~lNPGPF~~KEh~liti~a~~~----~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~ 156 (681)
T TIGR00727 81 TIRGRKYNIIPGPFNVKEHMFITLMYAVS----FGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRF 156 (681)
T ss_pred ccccceeccCCCCCChhcceeeeeeeehh----ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 99999999999999999999999999999 78899999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCchHHHHHHHHHhhcccCccc---ccchHHHHHHHHHHHHHHHhhcccccccccccchhhhccCCccceee
Q 008760 179 LVDPVEMWWPSNLAQVSLFRALHEKESKSK---GLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQ 255 (554)
Q Consensus 179 lV~p~~l~wPs~lat~~l~~sLh~~~~~~~---~~sr~r~f~~~f~~~f~~~~~P~~~~p~L~~~~~~cwi~p~n~~~~~ 255 (554)
+|+|++|+||++|++++|+|+||+++++.. ++||+|+|+++|+++|+|+|+|+|+||+||+|||+|||+|+|+++|+
T Consensus 157 lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~ 236 (681)
T TIGR00727 157 VVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQ 236 (681)
T ss_pred EeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhh
Confidence 999999999999999999999998664322 47999999999999999999999999999999999999999999999
Q ss_pred cccccccccccc-ccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCchhccccCCce
Q 008760 256 IGSGYHGLGIGA-FTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHK 334 (554)
Q Consensus 256 lfG~~~GlGl~~-~tfDWs~i~~~~gspl~~P~~~~~n~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~G~~ 334 (554)
+||+.+|||++| +|||||+|+++.|+||++|+++++|+++|.+++++++.|++||+ |.|+++|+|++|+++|||+|++
T Consensus 237 i~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~-N~w~~~~lPi~s~~~fd~~G~~ 315 (681)
T TIGR00727 237 IFGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYS-NTWYCQYLPISSNGLYDNFGHS 315 (681)
T ss_pred hhccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccccCCccchhhhcCCCc
Confidence 999999999999 89999999878899999999999999999999999999999999 9999999999999999999999
Q ss_pred eeeeeecCCCCCCChhhHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccCcchhhhhhhccC
Q 008760 335 YDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMKSYK 414 (554)
Q Consensus 335 Y~~s~il~~~~~~~~~~y~~~sp~~l~~~~~l~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~D~h~~lm~~y~ 414 (554)
||+|||+|+|+++|++|||||||+|+++++++.|+++||+++++++|++|+|||||++++|+ ++++|+|.|+|++||
T Consensus 316 Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~---~~~~D~h~rlM~~Y~ 392 (681)
T TIGR00727 316 YNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD---DDYPDPHSNLMKAYK 392 (681)
T ss_pred cccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc---CCCCChhHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999985 447899999999999
Q ss_pred CCChHHHHHHHHHHHHhhheEEeeecCCccchHHHHHHHHHHHHHHHhhheeeEeecCCCcchhHHHHhhhhhccCCcch
Q 008760 415 QVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPI 494 (554)
Q Consensus 415 evP~wwy~~~~v~s~~l~i~~~~~~~~~~~lp~w~~llal~la~v~~i~~~~~~a~Tg~~~~l~~i~qli~G~~~pG~~~ 494 (554)
|||+|||++++++++++++++++.+ ++++|||++++|+++++++.+|.++++|+||+++++|+++|+|+||+.||||+
T Consensus 393 evP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~p~ 470 (681)
T TIGR00727 393 EVPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGRPL 470 (681)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCCch
Confidence 9999999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008760 495 ANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQVLVAQKSCIFLVLLTYRQ 552 (554)
Q Consensus 495 anm~f~~~~~~~~~qa~~l~~DlKlG~y~kipPR~~f~aQliGtivg~~v~v~~~~~~ 552 (554)
+||+||++++++.+||.++++|+|+|||||+|||+||.+|++||++|++|+++++..|
T Consensus 471 a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~ 528 (681)
T TIGR00727 471 AMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWA 528 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998754
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=2e-106 Score=911.37 Aligned_cols=500 Identities=40% Similarity=0.713 Sum_probs=460.2
Q ss_pred hhhhhcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHhHHHHHhhhcCCceeeecccc
Q 008760 25 EEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWR 104 (554)
Q Consensus 25 ~evr~~v~~~Ddp~~p~~T~Ra~~lG~~~~~i~~~~n~~f~lr~~~~~~~~~~~~ll~~~~g~~~a~~lP~~~~~~~~~~ 104 (554)
||||+ ||++|||++|++|+|+|++|++++++++++|+||++|+|+++.+++++|+++|++||+|+|++|+|+ |+|
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~----~~~ 75 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE----GWK 75 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc----ccc
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999987 588
Q ss_pred cccCCCCCCccchheeeeeccccccccccccchhhHHHHHHHHhcCCccHHHHHHHHHHHHH--hhhHHhhhccceeecc
Q 008760 105 FSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQI--LGYGWAGMLRRYLVDP 182 (554)
Q Consensus 105 ~~lNpgpf~~KEh~~i~imas~a~~~~~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~q~--lG~g~Ag~lR~~lV~p 182 (554)
|+|||||||+|||+++|+|||++ ++.+++.+++.+|++||+++.++++++++++++|+ +|+++|+++||++|+|
T Consensus 76 ~~lnpgpft~kE~~~iq~~asa~----~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~ 151 (654)
T TIGR00728 76 FSLNPGPFNVKENNLIQTAASAC----GGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVP 151 (654)
T ss_pred eecCCCCCChhhheeEEeeeecc----ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCc
Confidence 99999999999999999999999 77788889999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHhhcccccccccccchhhhccCCccceeeccccccc
Q 008760 183 VEMWWPSNLAQVSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHG 262 (554)
Q Consensus 183 ~~l~wPs~lat~~l~~sLh~~~~~~~~~sr~r~f~~~f~~~f~~~~~P~~~~p~L~~~~~~cwi~p~n~~~~~lfG~~~G 262 (554)
++|+||+++|+++|+++||++.+.+++.++.|+. ..+ |.++|+.+..++|+||+.|++..++ +|| |
T Consensus 152 ~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l-~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---g 217 (654)
T TIGR00728 152 AKLPWPSGLATAELFKALHGKFHTANGDTIAKNL-LRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---G 217 (654)
T ss_pred ccccCCcccHHHHHHHHhhhccCccCCCccchhH-HHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---c
Confidence 9999999999999999997654433322223322 111 6677777888999999999988775 555 8
Q ss_pred cccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCchhccccCCceeee-eeec
Q 008760 263 LGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDT-TKIL 341 (554)
Q Consensus 263 lGl~~~tfDWs~i~~~~gspl~~P~~~~~n~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~G~~Y~~-s~il 341 (554)
+|+++++|||+++++++|+|+++|+++++|+++|.+++|+++.|++||+ |+|+++++|++|++.||++|.+|+. ++|+
T Consensus 218 lg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~-n~~~~~~~p~~s~~~~~~~~~~y~~~~~il 296 (654)
T TIGR00728 218 LGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYK-NTWPADADPIDSSSTIDSTGVRYNSVGLIV 296 (654)
T ss_pred ccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhc-CccccccCCCcchhhhcCCCceeeeeeEEE
Confidence 8999999999998778999999999999999999999999999999999 9999999999999999999999999 9999
Q ss_pred CCC-CCCChhhHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccCcchhhhhhhc--------
Q 008760 342 TPQ-YDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMKS-------- 412 (554)
Q Consensus 342 ~~~-~~~~~~~y~~~sp~~l~~~~~l~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~D~h~~lm~~-------- 412 (554)
+++ .++|+++|++|||+|+++++ |+.+|+.++++++|+.++|+|++++++|+..++ .+|.|.|+||+
T Consensus 297 ~~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~ 372 (654)
T TIGR00728 297 VDGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRDHYKL-GRDDHVRLLSRDEDLKVKN 372 (654)
T ss_pred eCCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhc-cCCCChHHHhhcccccccc
Confidence 887 79999999999999999999 999999999999999999999999998775433 44556555555
Q ss_pred cCCCChHHHHHHHHHHHHhhheEEeeecCCccchHHHHHHHHHHHHHHHhhheeeEeecCCCcchhHHHHhhhhhccCCc
Q 008760 413 YKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGK 492 (554)
Q Consensus 413 y~evP~wwy~~~~v~s~~l~i~~~~~~~~~~~lp~w~~llal~la~v~~i~~~~~~a~Tg~~~~l~~i~qli~G~~~pG~ 492 (554)
|+|+|+|||+.+++++++++++++++++..+++|||++++|+++++++++|.++++|+||...++|+++|+++|++.||+
T Consensus 373 ~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~pg~ 452 (654)
T TIGR00728 373 YKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYILPGR 452 (654)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeecCCc
Confidence 49999999999999999999999988854578999999999999999999999999999888899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008760 493 PIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQVLVAQKSCIFLVLLTYRQ 552 (554)
Q Consensus 493 ~~anm~f~~~~~~~~~qa~~l~~DlKlG~y~kipPR~~f~aQliGtivg~~v~v~~~~~~ 552 (554)
|++||+++++++++++||.|++||||+|||+|+|||+||.+|++|+++|++++++++..+
T Consensus 453 ~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~ 512 (654)
T TIGR00728 453 PLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWL 512 (654)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998765
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.8e-101 Score=866.71 Aligned_cols=482 Identities=39% Similarity=0.713 Sum_probs=455.8
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHhHHHHHhhhcCCceeeecccccccCCCCCCccchhee
Q 008760 41 VMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEHVII 120 (554)
Q Consensus 41 ~~T~Ra~~lG~~~~~i~~~~n~~f~lr~~~~~~~~~~~~ll~~~~g~~~a~~lP~~~~~~~~~~~~lNpgpf~~KEh~~i 120 (554)
|+|+|++++|++++++++++|+||++|+|+++.+++++||++|++||.++|. ++++++||||||+|||+++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~---------~~~~~ln~gp~~~kE~~~v 71 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI---------GWRFSLNPGPFTIKENNLV 71 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh---------ccccccCCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999982 3567799999999999999
Q ss_pred eeeccccccccccccchhhHHHH--HHHHhcCCccHHHHHHHHHHHHHhhhHHhhhccceeeccCCCCCCchHHHHHHHH
Q 008760 121 TIFANCGVSFGGGDAYSIGAITV--MKAYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQVSLFR 198 (554)
Q Consensus 121 ~imas~a~~~~~~~~~a~~~i~~--~~~~y~~~~~~~~~il~~ls~q~lG~g~Ag~lR~~lV~p~~l~wPs~lat~~l~~ 198 (554)
|+||+++ ++++++.+++++ ++.||++++++++++++++++|++|+++|+++||++|+|++|+||+++|++++++
T Consensus 72 q~~asa~----~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~ 147 (624)
T PF03169_consen 72 QTMASAA----GGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELIN 147 (624)
T ss_pred HHHHHHh----hhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHH
Confidence 9999999 778899999999 5568999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcccccchHHHHHHHHHHHHHHHhhcccccccccccchhhhccCCccceeeccccccccccccccccccccccc
Q 008760 199 ALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGISAY 278 (554)
Q Consensus 199 sLh~~~~~~~~~sr~r~f~~~f~~~f~~~~~P~~~~p~L~~~~~~cwi~p~n~~~~~lfG~~~GlGl~~~tfDWs~i~~~ 278 (554)
+||+++..+++++|+|+|+++|+++++|+|+|+|+||+|+.++|+||++|+|+..+++||+.+ ++||||++ +
T Consensus 148 alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~--~ 219 (624)
T PF03169_consen 148 ALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPI--L 219 (624)
T ss_pred HhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHH--h
Confidence 999998322278999999999999999999999999999999999999999999999998764 89999997 4
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCchhccccCCceeeeeeecCCCCCCChhhHhhcCCc
Q 008760 279 HGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGKL 358 (554)
Q Consensus 279 ~gspl~~P~~~~~n~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~G~~Y~~s~il~~~~~~~~~~y~~~sp~ 358 (554)
+|+|+++|+++++|+++|.+++|+++.|++||++|.|+++++|++|+++||++|+ +|++.|.++|++||++
T Consensus 220 ~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~~ 290 (624)
T PF03169_consen 220 IGSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGPM 290 (624)
T ss_pred cCCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHHH
Confidence 7999999999999999999999999999999887999999999999999999988 6789999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh------hhccCcchhhhhhhccCCCChHHHHHHHHHHHHhh
Q 008760 359 YLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSA------MKNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGLS 432 (554)
Q Consensus 359 ~l~~~~~l~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~------~~~~~~D~h~~lm~~y~evP~wwy~~~~v~s~~l~ 432 (554)
+.+..+.+.|+..|+.++++++|.+++|+|++++++|+. .+++++|+|+++|++|+|+|+|||+.+++++++++
T Consensus 291 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~ 370 (624)
T PF03169_consen 291 YGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLA 370 (624)
T ss_pred HHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877653 13457899999999999999999999999999999
Q ss_pred heEEeeecCCccchHHHHHHHHHHHHHHHhhheeeEeecCCCc--chhHHHHhhhhhccCCcchhhHHHHHHHHHHHHHH
Q 008760 433 LLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQP--GYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHA 510 (554)
Q Consensus 433 i~~~~~~~~~~~lp~w~~llal~la~v~~i~~~~~~a~Tg~~~--~l~~i~qli~G~~~pG~~~anm~f~~~~~~~~~qa 510 (554)
+++++.++.++++|||+.++++++++++++|.++++|+||++| ++++++|+++|++.||+|++||+++++++++++||
T Consensus 371 ~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa 450 (624)
T PF03169_consen 371 IIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQA 450 (624)
T ss_pred HHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9999998545899999999999999999999999999999977 79999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008760 511 LSFLSDLKLGHYMKIPPRCMYTAQVLVAQKSCIFLVLLTYRQ 552 (554)
Q Consensus 511 ~~l~~DlKlG~y~kipPR~~f~aQliGtivg~~v~v~~~~~~ 552 (554)
.|++||||+|||+|+|||+||.+|++|+++|++++++++..+
T Consensus 451 ~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~ 492 (624)
T PF03169_consen 451 GDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL 492 (624)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=5.1e-48 Score=428.04 Aligned_cols=420 Identities=14% Similarity=0.091 Sum_probs=311.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHhHHHHHhhhcCCceeeecccccccCCCCCCccchhee
Q 008760 41 VMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEHVII 120 (554)
Q Consensus 41 ~~T~Ra~~lG~~~~~i~~~~n~~f~lr~~~~~~~~~~~~ll~~~~g~~~a~~lP~~~~~~~~~~~~lNpgpf~~KEh~~i 120 (554)
++|+|++++|++++++.+++|.|++||.+++...++.+.+++|.+.|.+. ++|++||+++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~--------------------~~t~~Enniv 60 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR--------------------DRSILENNMV 60 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc--------------------cCChhHHHHH
Confidence 48999999999999999999999999999999999999999999999763 2699999999
Q ss_pred eeeccccccccccccchhhHHHHHHHHhc----CCccHHHHHHHHHHHHHhhhHHhhhccceeeccCCCCCCchHHHHHH
Q 008760 121 TIFANCGVSFGGGDAYSIGAITVMKAYYK----QSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQVSL 196 (554)
Q Consensus 121 ~imas~a~~~~~~~~~a~~~i~~~~~~y~----~~~~~~~~il~~ls~q~lG~g~Ag~lR~~lV~p~~l~wPs~lat~~l 196 (554)
|++|+++ ++. + .++...|+++. ++++++..+++++...++|..++.||||++|.++++.||++.|++++
T Consensus 61 QT~asA~----~~~--a-g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~ 133 (591)
T TIGR00733 61 QTAASAA----GTL--S-SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEV 133 (591)
T ss_pred HHHHHHH----HHH--H-HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHH
Confidence 9999999 443 3 47788888664 35788999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCcccccchHHHHHHHHHHHHHHHhhcccccccccccchhhhccCCccceeeccccccccccccccccccccc
Q 008760 197 FRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGIS 276 (554)
Q Consensus 197 ~~sLh~~~~~~~~~sr~r~f~~~f~~~f~~~~~P~~~~p~L~~~~~~cwi~p~n~~~~~lfG~~~GlGl~~~tfDWs~i~ 276 (554)
+++-.+.+ +++|.|.++..+..+++|.+++++ ..+. ...-.|.. . |.+...+++|||+
T Consensus 134 l~~g~~g~----~~~~~~~l~~g~~~s~~~~~~~~~--~~~~-~~~~~~~~---------~----g~~~~~~~~~~Sp-- 191 (591)
T TIGR00733 134 LKAGDKAR----NGTGAKPIAYGGILASIYAFLGSL--RVWS-GTLSAAKL---------V----GRRALYFGSDLSL-- 191 (591)
T ss_pred HHcccccc----chhhHHHHHHHHHHHHHHHHHHHh--ccCC-chHHHHHh---------c----CCcceEEEecccH--
Confidence 99742211 246788999999999999988431 1111 11111110 0 1112235689998
Q ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCchhccccCCceeeeeeecCCCCCCChhhHhhcC
Q 008760 277 AYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYG 356 (554)
Q Consensus 277 ~~~gspl~~P~~~~~n~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~G~~Y~~s~il~~~~~~~~~~y~~~s 356 (554)
+++|.|+++|+++.+++++|.+++|+++.|++..+ + |.....|.. + ....+-.+.
T Consensus 192 alvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~-~-~~~~~~~~~------------~-----------~~~~vw~~~ 246 (591)
T TIGR00733 192 ALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAK-M-GSPGDLSAL------------D-----------LAWTIWSTK 246 (591)
T ss_pred HHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCCCccHH------------H-----------HHHHHHhcc
Confidence 68999999999999999999999999999999875 3 322111100 0 001122234
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhc--cCcchhhhhhhccCCCChHHHHHHHHHHHHhhhe
Q 008760 357 KLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKN--MKLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLL 434 (554)
Q Consensus 357 p~~l~~~~~l~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~--~~~D~h~~lm~~y~evP~wwy~~~~v~s~~l~i~ 434 (554)
++|+..+.++..+ ... ++...|.+++.+|+..+. +.++. .+..|..+|+|.||...+.++. ++.+
T Consensus 247 vR~iGvg~m~~~g--l~~--------l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~dip~~~v~~~~~~~-~~~~- 313 (591)
T TIGR00733 247 VRYIGVGAIVVAA--LWT--------LLKLRGPIARGIKAGLEAARRRQAG-EAVLRTEEDLPINIVLTLVALF-VIPL- 313 (591)
T ss_pred cchhhHHHHHHHH--HHH--------HHHHHHHHHHHHHHHHHHhcccccc-cccccccccccHHHHHHHHHHH-HHHH-
Confidence 5565555433322 221 223344455444432111 00111 1234557889998754443322 2221
Q ss_pred EEeeecCCccchH---------HHHHHHHHHHHHHHhhheeeEee--cCCCc--chhHHHHhhhhhcc------------
Q 008760 435 MSFVWKDEVQLQW---------WGMLFAFALAWIVTLPIGVIQAT--TNQQP--GYDIIAQFMIGYVL------------ 489 (554)
Q Consensus 435 ~~~~~~~~~~lp~---------w~~llal~la~v~~i~~~~~~a~--Tg~~~--~l~~i~qli~G~~~------------ 489 (554)
..+ .++.|. .+.+++++++++++...+++.|+ ||.|| ++++++|++++.+.
T Consensus 314 --~~~--~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~ 389 (591)
T TIGR00733 314 --ADF--LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQI 389 (591)
T ss_pred --HHH--hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCcccc
Confidence 111 233332 46788888899999999999999 77899 79999999999997
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhhhh
Q 008760 490 PGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQVLVAQKSCIFLVLLTYR 551 (554)
Q Consensus 490 pG~~~anm~f~~~~~~~~~qa~~l~~DlKlG~y~kipPR~~f~aQliGtivg~~v~v~~~~~ 551 (554)
|+...+|++.+++...+++||.|++||||+||+++.+||+|+.+|++|+++|++++++++++
T Consensus 390 ~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~l 451 (591)
T TIGR00733 390 PELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNL 451 (591)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999864
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.97 E-value=5.5e-31 Score=281.61 Aligned_cols=425 Identities=17% Similarity=0.167 Sum_probs=286.0
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHhHHHHHhhhcCCceeeecccccccCCCCCCccc
Q 008760 37 PTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKE 116 (554)
Q Consensus 37 p~~p~~T~Ra~~lG~~~~~i~~~~n~~f~lr~~~~~~~~~~~~ll~~~~g~~~a~~lP~~~~~~~~~~~~lNpgpf~~KE 116 (554)
-++|++|+|++++|+++++++.+.|.|+|+|.+.+..+++-+.++|+...|.+. ++|+.|
T Consensus 10 ~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~--------------------~~silE 69 (624)
T COG1297 10 AFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK--------------------GSSILE 69 (624)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC--------------------ccchhh
Confidence 368999999999999999999999999999999999999999999999998762 468999
Q ss_pred hheeeeeccccccccccccchhhHHHHHHH----HhcCCccHHHHHHHHHHHHHhhhHHhhhccceeeccCCCCCCchHH
Q 008760 117 HVIITIFANCGVSFGGGDAYSIGAITVMKA----YYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLA 192 (554)
Q Consensus 117 h~~i~imas~a~~~~~~~~~a~~~i~~~~~----~y~~~~~~~~~il~~ls~q~lG~g~Ag~lR~~lV~p~~l~wPs~la 192 (554)
|+++|++||++ +.. +.++|...|. -|-++.+++....+.-...++|..|..+|||.+|.+++++||++.|
T Consensus 70 NNmVQT~ASAa----gtl--sa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvA 143 (624)
T COG1297 70 NNMVQTQASAA----GTL--SAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVA 143 (624)
T ss_pred hHHHHHHHhhh----ccc--cccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchh
Confidence 99999999999 443 4435544442 3458889999899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHhhcc---cccccccccchhhhccCCccceeecccccccccccccc
Q 008760 193 QVSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPG---YLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFT 269 (554)
Q Consensus 193 t~~l~~sLh~~~~~~~~~sr~r~f~~~f~~~f~~~~~P~---~~~p~L~~~~~~cwi~p~n~~~~~lfG~~~GlGl~~~t 269 (554)
+++++++..+++.. . +..|-..+......+|.++-+ .+... +-+|.. .++ +..-+.
T Consensus 144 aAEvL~~g~~~~gd--~-~g~~~i~~g~~~~~~~~~l~~g~~~~~~~-----~~~~~~----------~~~---~~~~lg 202 (624)
T COG1297 144 AAEVLKAGNQREGD--A-SGIKLIALGGALAALYSLLASGLRVIASS-----LSAAFS----------VGR---AAFALG 202 (624)
T ss_pred HHHHHHhcCCCCCC--c-ccchhhhhhhHHHHHHHHHhccceeehhh-----HHHHHH----------hcc---hhhhhc
Confidence 99999999844433 1 455667777778888877654 11111 111221 111 111233
Q ss_pred ccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCchhccccCCceeeeeeecCCCCCCCh
Q 008760 270 LDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNI 349 (554)
Q Consensus 270 fDWs~i~~~~gspl~~P~~~~~n~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~G~~Y~~s~il~~~~~~~~ 349 (554)
.|.|. +++|.+-++++.+.+-+++|.+++|++..|++-+. .|... |.++-.
T Consensus 203 ~~~S~--AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~--~~~p~-------------------------~~~~~~ 253 (624)
T COG1297 203 LGLSL--ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLI--VPGPS-------------------------DQEAGV 253 (624)
T ss_pred ccccH--HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhc--ccCCC-------------------------chhHHH
Confidence 44555 57899999999999999999999999999986654 23211 001111
Q ss_pred hh---HhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHhhhccCcchhhhhhhccCCCChHHHH
Q 008760 350 PA---YNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGS----AILEQSRSAMKNMKLDVHARLMKSYKQVPQWWFY 422 (554)
Q Consensus 350 ~~---y~~~sp~~l~~~~~l~~~~~fa~~~a~i~~~~l~~~~----~i~~~~~~~~~~~~~D~h~~lm~~y~evP~wwy~ 422 (554)
.+ |+++. +|+.++... +.+.++ ++...| .+++.+++.+.+++...+ -|..+|+|.-|-.
T Consensus 254 ~a~~vW~s~V-rfIGaG~i~--------i~~~wt--l~~l~~pi~~gi~~~f~~~r~~~~~~~~---~rte~Dl~~~~~~ 319 (624)
T COG1297 254 QAWKVWSSKV-RFIGAGAIA--------IAAIWT--LISLLGPILRGIKATFESARGRRRAGAV---SRTERDLPPKLVL 319 (624)
T ss_pred HHHHHhhhee-EEeehhHHH--------HHHHHH--HHHHHhHHHHHHHHHHHHhhcccccccc---cchhhcCChhhHH
Confidence 11 22221 456665422 222222 222233 344444443311111111 1345778865544
Q ss_pred HHHHHHHHhhheEEeeec---C----CccchHHHHHHHHHHHHHHHhhheeeEeecC--CCc--chhHHHHhhh------
Q 008760 423 VLLLGSIGLSLLMSFVWK---D----EVQLQWWGMLFAFALAWIVTLPIGVIQATTN--QQP--GYDIIAQFMI------ 485 (554)
Q Consensus 423 ~~~v~s~~l~i~~~~~~~---~----~~~lp~w~~llal~la~v~~i~~~~~~a~Tg--~~~--~l~~i~qli~------ 485 (554)
..++...+--.+...+.- . ...+-.-..++++++++.++-..|++.|.-| .+| ++..++..+.
T Consensus 320 ~~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~ 399 (624)
T COG1297 320 LVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILI 399 (624)
T ss_pred HHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHH
Confidence 333322221111111110 0 0012234556666777777777777777633 233 4555544443
Q ss_pred ------hhccCCcc----hhhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhhhh
Q 008760 486 ------GYVLPGKP----IANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQVLVAQKSCIFLVLLTYR 551 (554)
Q Consensus 486 ------G~~~pG~~----~anm~f~~~~~~~~~qa~~l~~DlKlG~y~kipPR~~f~aQliGtivg~~v~v~~~~~ 551 (554)
+..-|... ..+++..++...++.++.|.+||||+||+++..||+|+.+|++|+.+++++..+++-+
T Consensus 400 ~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~l 475 (624)
T COG1297 400 LGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLEL 475 (624)
T ss_pred hccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHH
Confidence 22334322 6778888999999999999999999999999999999999999999999999988743
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=81.96 E-value=28 Score=40.02 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=82.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhcc---cccc--cchhHHHHHHHHHhHHHHHhhhcCCceeeecccccccCCCCCCccc
Q 008760 42 MTFRAWFLGLTSCTLLIFLNTFFTF---RTQP--LTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKE 116 (554)
Q Consensus 42 ~T~Ra~~lG~~~~~i~~~~n~~f~l---r~~~--~~~~~~~~~ll~~~~g~~~a~~lP~~~~~~~~~~~~lNpgpf~~KE 116 (554)
...+.++.+++++.+.+.+-....+ +.|+ .-+.-.++.+++.+.++..+.. + .||.. .-
T Consensus 354 vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t---------~----~~P~~--~~- 417 (624)
T PF03169_consen 354 VPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGET---------G----INPVS--GL- 417 (624)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhc---------C----CCcch--hh-
Confidence 4467777777777776666555555 4455 4455556666666666655532 1 13221 00
Q ss_pred hheeeeeccccc-----------ccc-ccccchhhHHHHHHHHhcCCccHHHHHHHHHHHHHhhhHHhhhcccee-----
Q 008760 117 HVIITIFANCGV-----------SFG-GGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYL----- 179 (554)
Q Consensus 117 h~~i~imas~a~-----------~~~-~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~q~lG~g~Ag~lR~~l----- 179 (554)
+.+.|++..... +++ ....-+.++..-++.=+-.+.++..|...-+...++|...+...-+.+
T Consensus 418 ~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~ 497 (624)
T PF03169_consen 418 NILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYP 497 (624)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112222211110 000 001112222222332111234555666655555566666555444433
Q ss_pred ec-----cCCCCCCchHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHhh
Q 008760 180 VD-----PVEMWWPSNLAQVSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSL 229 (554)
Q Consensus 180 V~-----p~~l~wPs~lat~~l~~sLh~~~~~~~~~sr~r~f~~~f~~~f~~~~~ 229 (554)
+. ...+.=|+....+++.+.+-++.+. .+++.+.+++++.++-.++
T Consensus 498 ~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~~----~~~~~~~~~~~~G~~~~i~ 548 (624)
T PF03169_consen 498 CGPDQGDSFSCPAPQAFAWAAVAWGLIGPQRG----LPYSALPWGFLIGAVLPIL 548 (624)
T ss_pred cCccccccCcCcchHHHHHHHHHHHhcCCccc----chHHHHHHHHHHHHHHHHH
Confidence 22 2444556777777888887776432 4566777776666665443
No 8
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=76.51 E-value=8.1 Score=40.97 Aligned_cols=156 Identities=11% Similarity=0.132 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccCcchhhhhhh-ccCCCChHHHHHHHHHHHHhhheEEeeecCCccchHHHHHHHH
Q 008760 376 TSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMK-SYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAF 454 (554)
Q Consensus 376 ~a~i~~~~l~~~~~i~~~~~~~~~~~~~D~h~~lm~-~y~evP~wwy~~~~v~s~~l~i~~~~~~~~~~~lp~w~~llal 454 (554)
.-.++..++.+++++++.+++...++.++..++..+ -++.+-.|..+-. +++++.++.+...+ .-.++| +++++++
T Consensus 164 ~~~~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~gq~-i~al~~gi~~~igl-~ilgvp-~alllgi 240 (355)
T COG0628 164 VLVLLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQV-LVALIVGILTGIGL-LILGVP-YALLLGL 240 (355)
T ss_pred HHHHHHHHHcCHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHccc-HHHHHHH
Confidence 334455577888888887766432222222222211 1344444444333 33333333211111 012333 2333444
Q ss_pred HHHHHHHhhheeeEeecCCCcchhHHHHhhhhhccCCcchhhHHHHHHHHHHHHHH-HHHhhhhhhhhhcCCChHHHHHH
Q 008760 455 ALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHA-LSFLSDLKLGHYMKIPPRCMYTA 533 (554)
Q Consensus 455 ~la~v~~i~~~~~~a~Tg~~~~l~~i~qli~G~~~pG~~~anm~f~~~~~~~~~qa-~~l~~DlKlG~y~kipPR~~f~a 533 (554)
+.++.-.+|. ..+.+..+--.+.++...| +. -...-.++.....|- .++++..=+|+-+|+||=..+.+
T Consensus 241 l~g~~~lIP~--------iG~~i~~ip~~i~al~~~~-~~-~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilis 310 (355)
T COG0628 241 LAGLLSLIPY--------IGPVIGLIPAVIIALLQGG-PW-GALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLS 310 (355)
T ss_pred HHHHHHhhcc--------cccHHHHHHHHHHHHHhcc-hH-HHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHHH
Confidence 3333333331 0112444444555666555 22 233334555555554 45678888999999999999999
Q ss_pred HHHHHHHHHHH
Q 008760 534 QVLVAQKSCIF 544 (554)
Q Consensus 534 QliGtivg~~v 544 (554)
.+.|.-+..++
T Consensus 311 ll~g~~l~G~~ 321 (355)
T COG0628 311 LLGGGSLFGFV 321 (355)
T ss_pred HHHHHHHHHHH
Confidence 99887554443
No 9
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=50.98 E-value=92 Score=32.13 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=49.9
Q ss_pred HhhheeeEeecCCCcchhHHHHh----hhhhccCCcchhhHHHHHHHHHHHHHHH-HHhhhhhhhhhcCCChHHHHHHHH
Q 008760 461 TLPIGVIQATTNQQPGYDIIAQF----MIGYVLPGKPIANLLFKIYGRISTIHAL-SFLSDLKLGHYMKIPPRCMYTAQV 535 (554)
Q Consensus 461 ~i~~~~~~a~Tg~~~~l~~i~ql----i~G~~~pG~~~anm~f~~~~~~~~~qa~-~l~~DlKlG~y~kipPR~~f~aQl 535 (554)
.+..|.+.|.++.=|-++...-. +..+...+ ........+.....+|-. ++++-.=.|+-+|+||=..+.+.+
T Consensus 221 ~~l~~~l~~i~~~IP~iG~~i~~ip~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~ 298 (327)
T PF01594_consen 221 ALLLGVLAFILSFIPYIGPIIVLIPAAIYALLQGG--PWAALIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVI 298 (327)
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHH
Confidence 33344444555555533332222 23333322 333444445555555654 555666689999999999999999
Q ss_pred HHHHH----HHHHHHHhh
Q 008760 536 LVAQK----SCIFLVLLT 549 (554)
Q Consensus 536 iGtiv----g~~v~v~~~ 549 (554)
.|..+ |.+++++++
T Consensus 299 ~g~~~fG~~G~il~~pi~ 316 (327)
T PF01594_consen 299 IGGYLFGFIGLILAPPIL 316 (327)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 88755 555565554
No 10
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=47.04 E-value=1.9e+02 Score=29.92 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=30.2
Q ss_pred HHHHhhhhhhhhhcCCChHHHHHHHHHHHHH----HHHHHHHh
Q 008760 510 ALSFLSDLKLGHYMKIPPRCMYTAQVLVAQK----SCIFLVLL 548 (554)
Q Consensus 510 a~~l~~DlKlG~y~kipPR~~f~aQliGtiv----g~~v~v~~ 548 (554)
-.++++-.=.|.-+++||=.++.+.+.|..+ |.++++++
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~ 328 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVI 328 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777789999999999999999988655 44555554
No 11
>PRK10983 putative inner membrane protein; Provisional
Probab=43.72 E-value=3.1e+02 Score=29.43 Aligned_cols=43 Identities=2% Similarity=-0.104 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHH----HHHHHHHh
Q 008760 506 STIHALSFLSDLKLGHYMKIPPRCMYTAQVLVAQK----SCIFLVLL 548 (554)
Q Consensus 506 ~~~qa~~l~~DlKlG~y~kipPR~~f~aQliGtiv----g~~v~v~~ 548 (554)
...+..++++-.=+|.-.++||=..+.+.+.|..+ |.++++.+
T Consensus 287 vv~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i 333 (368)
T PRK10983 287 VVGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVV 333 (368)
T ss_pred HHHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567777778999999999999998888774 44444444
No 12
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=41.70 E-value=96 Score=34.40 Aligned_cols=91 Identities=20% Similarity=0.244 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHHHhhheE-EeeecCCccchHHHHHHHHHHHHHHHhhheeeEeecCCCcchhHHHHhhhhhccCCcch
Q 008760 416 VPQWWFYVLLLGSIGLSLLM-SFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPI 494 (554)
Q Consensus 416 vP~wwy~~~~v~s~~l~i~~-~~~~~~~~~lp~w~~llal~la~v~~i~~~~~~a~Tg~~~~l~~i~qli~G~~~pG~~~ 494 (554)
-++++|+.+.++.+++-+.. ... -.+..|| +--...+.++.++..+.+...++.++. ..++-.. +-.
T Consensus 251 ~~~~~~~~~~~l~~~~li~g~~~~---~~~~~~~-~~~~~~~fl~~~ii~~~i~~~~~~~~~--~~~~~F~------~G~ 318 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYGFSFV---IIKIKWY-FPEIAALFLIIGIIIGLIRHRSGKSPN--EIVKAFF------KGM 318 (465)
T ss_pred cccceeehHHHHHHHHHHhchhhh---hcccccc-HHHHHHHHHHHHHHHHHHHhhccCCHh--HHHHHHH------HHH
Confidence 46788999988888866552 111 1222333 333334444555555555545555541 1222111 114
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q 008760 495 ANLLFKIYGRISTIHALSFLSDLK 518 (554)
Q Consensus 495 anm~f~~~~~~~~~qa~~l~~DlK 518 (554)
++++..+..-.-+.-+.-+++|.|
T Consensus 319 ~~~~~~a~vVgla~ai~v~~~~~~ 342 (465)
T PF03606_consen 319 GDMLSFALVVGLARAISVFMEGGK 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 455444444444455556666666
No 13
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=40.02 E-value=73 Score=31.94 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=24.8
Q ss_pred cCCCChHHHHHHHHHHHHhhheEEeeecCCccchHHHHHHHHHHHHHHHh
Q 008760 413 YKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTL 462 (554)
Q Consensus 413 y~evP~wwy~~~~v~s~~l~i~~~~~~~~~~~lp~w~~llal~la~v~~i 462 (554)
+|.+++|..+ .+++.++++++.... ++-+|+.+++++.++++.+.
T Consensus 24 dp~l~~~ml~-a~l~~~~v~v~ig~l----~~~~~~~~i~gi~~g~l~am 68 (224)
T PF13829_consen 24 DPKLPWLMLG-AFLGPIAVFVLIGLL----FGSWWYWLIIGILLGLLAAM 68 (224)
T ss_pred CcchHHHHHH-HHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHHHHH
Confidence 4666655433 334444444433322 34667778888888776543
No 14
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=37.84 E-value=2.6e+02 Score=29.51 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHHHHHHHH-HHHhhhhhhhhhcCCChHHHHHHHHHHHHH----HHHHHHHhh
Q 008760 502 YGRISTIHA-LSFLSDLKLGHYMKIPPRCMYTAQVLVAQK----SCIFLVLLT 549 (554)
Q Consensus 502 ~~~~~~~qa-~~l~~DlKlG~y~kipPR~~f~aQliGtiv----g~~v~v~~~ 549 (554)
..+....|. .++++-.=+|+-+++||=.++.+.++|.-+ |.+++++++
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444455554 567888889999999999999999988754 444555544
No 15
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=31.27 E-value=55 Score=22.38 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 008760 46 AWFLGLTSCTLLIFLNTF 63 (554)
Q Consensus 46 a~~lG~~~~~i~~~~n~~ 63 (554)
+|++|+.+++..+.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988864
No 16
>PRK14749 hypothetical protein; Provisional
Probab=29.33 E-value=59 Score=22.10 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 008760 46 AWFLGLTSCTLLIFLNTF 63 (554)
Q Consensus 46 a~~lG~~~~~i~~~~n~~ 63 (554)
+|++|+.+++..+.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988864
No 17
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=28.89 E-value=64 Score=21.70 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 008760 46 AWFLGLTSCTLLIFLNTF 63 (554)
Q Consensus 46 a~~lG~~~~~i~~~~n~~ 63 (554)
+|++|+++++..+.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988863
No 18
>PHA02132 hypothetical protein
Probab=28.77 E-value=67 Score=26.26 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008760 523 MKIPPRCMYTAQVLVAQKSCIFLVLLTYRQ 552 (554)
Q Consensus 523 ~kipPR~~f~aQliGtivg~~v~v~~~~~~ 552 (554)
-|.|.|+.=..|+.|++.|+-.-+.++..-
T Consensus 41 sk~pa~sl~~vqiyg~ia~awlp~~~~l~~ 70 (86)
T PHA02132 41 SKMPARSLCAVQVYGMIAGAWLPLAIYLVC 70 (86)
T ss_pred ccCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999998877666543
No 19
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=22.49 E-value=6.2e+02 Score=25.66 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHHhhheEEeeecCCccchHHHHHHHHHHHHHHHhhheeeEeecCCCcchhHHHHhhhhhccCCcchhh
Q 008760 417 PQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIAN 496 (554)
Q Consensus 417 P~wwy~~~~v~s~~l~i~~~~~~~~~~~lp~w~~llal~la~v~~i~~~~~~a~Tg~~~~l~~i~qli~G~~~pG~~~an 496 (554)
|-|......++..++++..+..++..+-...-+.++.+.++.+++.+.......+|.+..- .|.+.++-..|-....
T Consensus 50 ~~~v~~i~~~~~~~vtl~lv~G~n~kt~~A~~~tl~~~~~~~~l~~~~~~~~~~~G~~~e~---~~~l~~~~~~~l~~~~ 126 (244)
T PF07907_consen 50 PILVTIIAAILITAVTLFLVNGFNKKTLAAFIGTLIGVLLAGILALLVMKLAHLQGFNYEE---MEYLLQYSLNGLDFRG 126 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhH---HHHHhhhccCCCCHHH
Confidence 4455555555556666666666555555566667777788888888888888888887632 2333333332323334
Q ss_pred HHHHHHHHHHHHH----HHHH---hhhhhhhhhcCCChHHHHHH------HHHHHHHHHH
Q 008760 497 LLFKIYGRISTIH----ALSF---LSDLKLGHYMKIPPRCMYTA------QVLVAQKSCI 543 (554)
Q Consensus 497 m~f~~~~~~~~~q----a~~l---~~DlKlG~y~kipPR~~f~a------QliGtivg~~ 543 (554)
+.+..+--.+..- |.+. ++.+|--+ =+++.|..|.+ +++||.+..+
T Consensus 127 l~~a~ilig~LGAvmDvaisIaSsl~El~~~~-p~is~~eL~~SG~~IGrDimGtm~NTL 185 (244)
T PF07907_consen 127 LFFAGILIGSLGAVMDVAISIASSLFELKRHN-PDISRKELFKSGMNIGRDIMGTMINTL 185 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333222222 2221 22333222 46778888876 5666665444
No 20
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=21.82 E-value=5.5e+02 Score=29.55 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHHHHHhhheeeEeecCCCcchhHHHHh----hhhhccCCcchhhHHHHHHHHHHHHHHHHHhhhh---
Q 008760 445 LQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQF----MIGYVLPGKPIANLLFKIYGRISTIHALSFLSDL--- 517 (554)
Q Consensus 445 lp~w~~llal~la~v~~i~~~~~~a~Tg~~~~l~~i~ql----i~G~~~pG~~~anm~f~~~~~~~~~qa~~l~~Dl--- 517 (554)
+.+-++++.++++.+++..+.++-=.+|..++.++.+-+ +.-.+.+.++.-|.+.++.+..+.+-+. +..-+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 556788999999999999999998899998866554433 3334556778888888777665554432 22111
Q ss_pred -hhhhhcCCChHHHHHHHHHHHHHHHHHHHHh
Q 008760 518 -KLGHYMKIPPRCMYTAQVLVAQKSCIFLVLL 548 (554)
Q Consensus 518 -KlG~y~kipPR~~f~aQliGtivg~~v~v~~ 548 (554)
.+|..-+.|.-.++..=+.|.++|.+..+++
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPL 112 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPL 112 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2232223454555556668888888888773
No 21
>PRK10420 L-lactate permease; Provisional
Probab=21.02 E-value=6.6e+02 Score=28.68 Aligned_cols=57 Identities=7% Similarity=0.082 Sum_probs=44.4
Q ss_pred hhHHHHhhhhhccCCcchhhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 008760 477 YDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQVLVAQKSCIFLV 546 (554)
Q Consensus 477 l~~i~qli~G~~~pG~~~anm~f~~~~~~~~~qa~~l~~DlKlG~y~kipPR~~f~aQliGtivg~~v~v 546 (554)
+..+.=.+++++.-.+.-+|.+|+.+=..++.| +++||--+..+|.+|..+|..+++
T Consensus 445 ~aP~lG~lG~FvTGS~TsSN~LF~~lQ~~tA~~-------------lgl~~~li~Aaq~~Gg~~GkmIsp 501 (551)
T PRK10420 445 FSPFLGWLGVFLTGSDTSSNALFAALQATAAQQ-------------IGVSDVLLVAANTTGGVTGKMISP 501 (551)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHHHHH-------------cCCCHHHHHHHHHHhhHHhhccCH
Confidence 444555566777777889999998876655544 778999999999999999987765
No 22
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=20.62 E-value=2.9e+02 Score=24.60 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=33.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHhHHHHH
Q 008760 40 PVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFM 89 (554)
Q Consensus 40 p~~T~Ra~~lG~~~~~i~~~~n~~f~lr~~~~~~~~~~~~ll~~~~g~~~ 89 (554)
..-+.|+.++|.+++.+.+++.-+.... +..+-......++..++-+..
T Consensus 11 ~hgs~k~yviGFiLSliLT~i~F~lv~~-~~~~~~~~~~~i~~lA~vQi~ 59 (109)
T PRK10582 11 SHGSVKTYMTGFILSIILTVIPFWMVMT-GAASPAVILGTILAMAVVQIL 59 (109)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH-ccCChhHHHHHHHHHHHHHHH
Confidence 3458999999999999999998777753 333333444445444544443
Done!