Query 008760
Match_columns 554
No_of_seqs 150 out of 934
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 15.1 91 0.0031 23.2 2.3 19 443-461 8-26 (54)
2 2k1a_A Integrin alpha-IIB; sin 14.6 1E+02 0.0035 21.7 2.4 19 443-461 6-24 (42)
3 3iyz_A Aquaporin-4; water tran 14.0 9.5E+02 0.033 24.2 11.1 20 525-544 171-190 (340)
4 3gia_A Uncharacterized protein 13.2 9.6E+02 0.033 23.8 11.5 43 502-546 199-241 (444)
5 2l8s_A Integrin alpha-1; trans 10.2 4.5E+02 0.015 19.4 4.8 34 280-315 2-36 (54)
6 2k1k_A Ephrin type-A receptor 7.5 3.3E+02 0.011 18.5 2.9 15 533-547 11-25 (38)
7 4djk_A Probable glutamate/gamm 7.4 1.9E+02 0.0065 30.0 2.5 51 497-549 207-257 (511)
8 2j01_J 50S ribosomal protein L 6.3 4.1E+02 0.014 23.9 3.8 27 518-544 121-147 (173)
9 1zav_A 50S ribosomal protein L 6.0 4.3E+02 0.015 23.9 3.8 27 518-544 128-154 (180)
10 2fnf_X Putative RAS effector N 5.6 1.7E+02 0.0059 22.5 0.7 18 25-42 2-19 (72)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.07 E-value=91 Score=23.19 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=11.0
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 008760 443 VQLQWWGMLFAFALAWIVT 461 (554)
Q Consensus 443 ~~lp~w~~llal~la~v~~ 461 (554)
..+|||-++++++.++++.
T Consensus 8 ~~vp~wiIi~svl~GLllL 26 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLL 26 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 3466666666666555543
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=14.60 E-value=1e+02 Score=21.67 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=10.8
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 008760 443 VQLQWWGMLFAFALAWIVT 461 (554)
Q Consensus 443 ~~lp~w~~llal~la~v~~ 461 (554)
.+.|+|-++++++.+.++.
T Consensus 6 ~~vp~wiIi~s~l~GLllL 24 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLL 24 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 3466666666666555543
No 3
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=13.96 E-value=9.5e+02 Score=24.18 Aligned_cols=20 Identities=0% Similarity=0.032 Sum_probs=14.0
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 008760 525 IPPRCMYTAQVLVAQKSCIF 544 (554)
Q Consensus 525 ipPR~~f~aQliGtivg~~v 544 (554)
++.-..|..|+++|.+=.++
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~~ 190 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVFT 190 (340)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 34557789999998764443
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=13.20 E-value=9.6e+02 Score=23.81 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 008760 502 YGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQVLVAQKSCIFLV 546 (554)
Q Consensus 502 ~~~~~~~qa~~l~~DlKlG~y~kipPR~~f~aQliGtivg~~v~v 546 (554)
+++.+......+..+.|=-+ |.-||.++.+-++.+++-.+++.
T Consensus 199 ~a~~G~e~~~~~~~e~k~P~--r~ip~ai~~~~~~~~~~y~~~~~ 241 (444)
T 3gia_A 199 LSYMGFGVITNASEHIENPK--KNVPRAIFISILIVMFVYVGVAI 241 (444)
T ss_dssp GGGTHHHHHHTTGGGBSSHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHccCcc--cchhHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666322 33455555555555555444433
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.18 E-value=4.5e+02 Score=19.42 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=19.2
Q ss_pred CCcccccHHHHHH-HHHHHHHHHHHHHHHHHHhcCCc
Q 008760 280 GSPLVTPWTSILN-VGIGFVMFIYIIVPLCYWKFDTF 315 (554)
Q Consensus 280 gspl~~P~~~~~n-~~~G~vl~~~ii~P~ly~~~n~w 315 (554)
|.|--+|+|..+- ..+|.++ ..++.-++|.. |.+
T Consensus 2 ~~~~~vp~WiIi~svl~GLLL-L~Lii~~LwK~-GFF 36 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLL-LMLLILALWKI-GFF 36 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHH-HHHHHHHHHHH-HHT
T ss_pred CCCccCchHHHHHHHHHHHHH-HHHHHHHHHHc-Ccc
Confidence 5566688887554 4445444 34444466655 544
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=7.50 E-value=3.3e+02 Score=18.53 Aligned_cols=15 Identities=0% Similarity=0.009 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 008760 533 AQVLVAQKSCIFLVL 547 (554)
Q Consensus 533 aQliGtivg~~v~v~ 547 (554)
.++.|+++|+++.+.
T Consensus 11 GaIAGiVvG~v~gv~ 25 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHH
Confidence 345666666654433
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=7.44 E-value=1.9e+02 Score=29.96 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q 008760 497 LLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQVLVAQKSCIFLVLLT 549 (554)
Q Consensus 497 m~f~~~~~~~~~qa~~l~~DlKlG~y~kipPR~~f~aQliGtivg~~v~v~~~ 549 (554)
+....+++.+...+..+..+.|=-+ |.=||.+..+-++.+++..+++..+.
T Consensus 207 ~~~~~~a~~G~e~~~~~a~E~k~P~--k~ip~ai~~~~~~~~~~y~~~~~~~~ 257 (511)
T 4djk_A 207 FVAFILSYMGVEASATHVNEMSNPG--RDYPLAMLLLMVAAICLSSVGGLSIA 257 (511)
T ss_dssp HHHHHHHHTTGGGGTGGGSSSSCCT--TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhccCcc--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777788888888887433 56688888888877777777666554
No 8
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=6.25 E-value=4.1e+02 Score=23.85 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=22.0
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHH
Q 008760 518 KLGHYMKIPPRCMYTAQVLVAQKSCIF 544 (554)
Q Consensus 518 KlG~y~kipPR~~f~aQliGtivg~~v 544 (554)
.+-.+.++|.|...++|++|++-+..-
T Consensus 121 ~v~~la~LPs~eel~a~l~g~l~ap~~ 147 (173)
T 2j01_J 121 DVEALAELPTMDELRAELVGVLQAPMA 147 (173)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999866543
No 9
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=6.01 E-value=4.3e+02 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=21.9
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHH
Q 008760 518 KLGHYMKIPPRCMYTAQVLVAQKSCIF 544 (554)
Q Consensus 518 KlG~y~kipPR~~f~aQliGtivg~~v 544 (554)
.+-.+.++|.|...++|++|++-+..-
T Consensus 128 ~v~~la~LPs~eel~a~l~g~l~ap~~ 154 (180)
T 1zav_A 128 EVENIAKLPSKEELYAMLVGRVKAPIT 154 (180)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999866543
No 10
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=5.57 E-value=1.7e+02 Score=22.53 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=3.9
Q ss_pred hhhhhcCCCCCCCCCCcc
Q 008760 25 EEVALIVPETDDPTMPVM 42 (554)
Q Consensus 25 ~evr~~v~~~Ddp~~p~~ 42 (554)
+|||.+...++||+++..
T Consensus 2 ~~~~~~~~~~~dp~~~~~ 19 (72)
T 2fnf_X 2 RDVRSIFEQPQDPRVLAE 19 (72)
T ss_dssp ------------CCCCGG
T ss_pred cchhhhccCCCCcccccc
Confidence 688989888888887643
Done!