Query 008760
Match_columns 554
No_of_seqs 150 out of 934
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 11:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008760.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008760hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.5 53 0.0039 18.9 0.4 13 542-554 12-24 (26)
2 d1zava1 d.58.62.1 (A:1-177) Ri 6.6 1.8E+02 0.013 24.1 3.8 27 519-545 128-154 (177)
3 d1eysh2 f.23.10.1 (H:7-43) Pho 5.9 1.6E+02 0.011 18.5 2.1 22 533-554 6-27 (37)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 5.5 2.1E+02 0.016 17.6 2.6 13 448-460 19-31 (37)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 3.7 4.2E+02 0.031 15.2 3.2 20 366-385 4-23 (30)
6 d1gvda_ a.4.1.3 (A:) c-Myb, DN 3.5 1.3E+02 0.0098 19.8 0.5 8 110-117 4-11 (52)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 2.9 1.6E+02 0.012 21.7 0.5 11 338-348 1-11 (91)
8 d1ymga1 f.19.1.1 (A:6-239) Aqu 2.8 3.6E+02 0.026 23.0 3.0 19 531-549 85-103 (234)
9 d1zcea1 b.122.1.8 (A:2-147) Hy 2.8 1.8E+02 0.013 23.8 0.6 15 508-522 34-48 (146)
10 d2evea1 b.122.1.8 (A:2-149) Hy 2.8 2E+02 0.015 23.5 0.9 15 508-522 31-45 (148)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.47 E-value=53 Score=18.91 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=8.9
Q ss_pred HHHHHHhhhhccC
Q 008760 542 CIFLVLLTYRQKE 554 (554)
Q Consensus 542 ~~v~v~~~~~~~~ 554 (554)
.+.+.+++|+|.|
T Consensus 12 ~ffalli~ylqte 24 (26)
T d1rzhh2 12 IFLAGLIYYLQTE 24 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 4567777777765
No 2
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=6.59 E-value=1.8e+02 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=22.3
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHH
Q 008760 519 LGHYMKIPPRCMYTAQVLVAQKSCIFL 545 (554)
Q Consensus 519 lG~y~kipPR~~f~aQliGtivg~~v~ 545 (554)
+-.+.++|.|...++|++|.+-+..-.
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~ 154 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITG 154 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHH
Confidence 447889999999999999998765543
No 3
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=5.94 E-value=1.6e+02 Score=18.50 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccC
Q 008760 533 AQVLVAQKSCIFLVLLTYRQKE 554 (554)
Q Consensus 533 aQliGtivg~~v~v~~~~~~~~ 554 (554)
+|+.=-..=.+...+++|+|+|
T Consensus 6 Aql~ly~Fw~FFagLi~YL~rE 27 (37)
T d1eysh2 6 AQITIWAFWLFFFGLIIYLRRE 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5665556667788888999876
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.46 E-value=2.1e+02 Score=17.62 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 008760 448 WGMLFAFALAWIV 460 (554)
Q Consensus 448 w~~llal~la~v~ 460 (554)
|++++.++++..|
T Consensus 19 ~GlLlifvl~vLF 31 (37)
T d2axtl1 19 LGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555444
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.70 E-value=4.2e+02 Score=15.17 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008760 366 LSIGSGFARFTSTLTHVALF 385 (554)
Q Consensus 366 l~~~~~fa~~~a~i~~~~l~ 385 (554)
+.|..-|||+.+.+.....+
T Consensus 4 i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHHHHHh
Confidence 45667788888776655433
No 6
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.49 E-value=1.3e+02 Score=19.82 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=3.7
Q ss_pred CCCCccch
Q 008760 110 GPFNIKEH 117 (554)
Q Consensus 110 gpf~~KEh 117 (554)
||||..|.
T Consensus 4 g~WT~eED 11 (52)
T d1gvda_ 4 GPWTKEED 11 (52)
T ss_dssp CSCCHHHH
T ss_pred CCCCHHHH
Confidence 44444444
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.88 E-value=1.6e+02 Score=21.71 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=6.6
Q ss_pred eeecCCCCCCC
Q 008760 338 TKILTPQYDLN 348 (554)
Q Consensus 338 s~il~~~~~~~ 348 (554)
|.++||.|..-
T Consensus 1 ~s~ldP~gp~a 11 (91)
T d1fftb2 1 SALLDPKGQIG 11 (91)
T ss_dssp CCCSSCCSCCH
T ss_pred CCCcCCCCHHH
Confidence 35677777543
No 8
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.83 E-value=3.6e+02 Score=22.96 Aligned_cols=19 Identities=32% Similarity=0.233 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 008760 531 YTAQVLVAQKSCIFLVLLT 549 (554)
Q Consensus 531 f~aQliGtivg~~v~v~~~ 549 (554)
..+|++|.++|+.+.-.++
T Consensus 85 i~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 85 MVAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred eehHHHHHHHHHHHHHHHc
Confidence 3789999999998766554
No 9
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.79 E-value=1.8e+02 Score=23.79 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=13.0
Q ss_pred HHHHHHhhhhhhhhh
Q 008760 508 IHALSFLSDLKLGHY 522 (554)
Q Consensus 508 ~qa~~l~~DlKlG~y 522 (554)
.||.++++|+|.|..
T Consensus 34 yqArn~lr~Mk~GD~ 48 (146)
T d1zcea1 34 YQARNNMRAMKIGDK 48 (146)
T ss_dssp HHHHHHHHTCCTTCE
T ss_pred HHHHHHHHhccCCCE
Confidence 689999999999865
No 10
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=2.78 E-value=2e+02 Score=23.55 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=12.7
Q ss_pred HHHHHHhhhhhhhhh
Q 008760 508 IHALSFLSDLKLGHY 522 (554)
Q Consensus 508 ~qa~~l~~DlKlG~y 522 (554)
.||.++++|+|.|-.
T Consensus 31 yqArn~lr~M~~GD~ 45 (148)
T d2evea1 31 YQARNFLRTMAEGDE 45 (148)
T ss_dssp HHHHHHHHHCCTTCE
T ss_pred HHHHHHHHhcccCCE
Confidence 589999999999853
Done!