Your job contains 1 sequence.
>008761
MESKEMNLNKECSGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT
SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEV
SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDA
NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASEC
GPDVPGISDRRTAGPKKIELRIGESSAFFTYVKSNMPRDSSPRIVNVDDSAAQNVRMEEK
CQPCCQQVVSDTRIHENGEAWENYSQGEDFRSSSSVPDSLSMERSSTPPTDFPQNRNFKD
EKFFQPQMPPTRNEPPQATYQYYMSGAMNQVMLPSSSAQMYQKNLHELQNHSMLPQYNHL
PQCVPHVNGMASFPYYPINMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQ
KRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPSSVDYDEDEDEEEEM
ASRDSSPDNDTSGN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008761
(554 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 782 7.9e-129 2
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 296 2.2e-40 2
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 260 3.2e-36 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 225 2.2e-15 1
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 218 9.1e-15 1
TAIR|locus:2062749 - symbol:AT2G46670 "AT2G46670" species... 193 1.8e-14 1
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 219 5.8e-14 2
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 216 5.8e-14 2
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 211 1.2e-13 2
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 197 4.9e-13 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 197 4.9e-13 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 189 6.2e-12 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 166 1.5e-11 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 159 8.8e-11 1
UNIPROTKB|Q4GZL0 - symbol:rr1 "Type A response regulator ... 161 6.4e-10 1
TIGR_CMR|BA_5504 - symbol:BA_5504 "DNA-binding response r... 152 8.0e-09 1
UNIPROTKB|Q8ECB3 - symbol:flrC "Two component signal tran... 162 9.5e-09 1
TIGR_CMR|SO_3230 - symbol:SO_3230 "flagellar regulatory p... 162 9.5e-09 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 140 1.0e-08 1
TIGR_CMR|CPS_0681 - symbol:CPS_0681 "DNA-binding response... 153 1.5e-08 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 138 1.6e-08 1
TIGR_CMR|SO_4477 - symbol:SO_4477 "transcriptional regula... 149 2.8e-08 1
TIGR_CMR|CPS_2786 - symbol:CPS_2786 "response regulator" ... 149 4.4e-08 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 142 4.8e-08 1
TIGR_CMR|CBU_1227 - symbol:CBU_1227 "DNA-binding response... 147 5.6e-08 1
TIGR_CMR|DET_0232 - symbol:DET_0232 "DNA-binding response... 146 6.5e-08 1
TIGR_CMR|GSU_0104 - symbol:GSU_0104 "response regulator, ... 131 9.3e-08 1
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 145 9.8e-08 1
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 141 1.1e-07 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 146 1.4e-07 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 152 1.7e-07 1
UNIPROTKB|Q4KG71 - symbol:fleR "Sigma-54 dependent DNA-bi... 151 1.7e-07 1
TIGR_CMR|BA_5715 - symbol:BA_5715 "DNA-binding response r... 143 1.9e-07 1
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 139 2.2e-07 1
TIGR_CMR|BA_4777 - symbol:BA_4777 "DNA-binding response r... 142 2.2e-07 1
UNIPROTKB|G3LTY8 - symbol:phoB "Two-component regulator p... 141 2.9e-07 1
TAIR|locus:2007482 - symbol:AT1G07050 "AT1G07050" species... 135 4.1e-07 1
UNIPROTKB|Q747K4 - symbol:GSU3261 "Response regulator, pu... 124 5.3e-07 1
TIGR_CMR|GSU_3261 - symbol:GSU_3261 "response regulator" ... 124 5.3e-07 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 136 5.6e-07 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 123 6.8e-07 1
TIGR_CMR|DET_0130 - symbol:DET_0130 "response regulator" ... 123 6.8e-07 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 123 6.8e-07 1
TIGR_CMR|GSU_2219 - symbol:GSU_2219 "response regulator" ... 122 8.7e-07 1
UNIPROTKB|Q9KNN9 - symbol:VC_2692 "Transcriptional regula... 137 8.8e-07 1
TIGR_CMR|VC_2692 - symbol:VC_2692 "transcriptional regula... 137 8.8e-07 1
UNIPROTKB|P0AE67 - symbol:cheY species:83333 "Escherichia... 121 1.1e-06 1
UNIPROTKB|Q48GE0 - symbol:fleR "Sigma-54 dependent DNA-bi... 143 1.3e-06 1
UNIPROTKB|Q884Y0 - symbol:fleR "Sigma-54 dependent transc... 143 1.3e-06 1
TIGR_CMR|GSU_1316 - symbol:GSU_1316 "response regulator" ... 140 1.3e-06 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 120 1.4e-06 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 120 1.4e-06 1
TIGR_CMR|BA_0994 - symbol:BA_0994 "response regulator" sp... 141 1.5e-06 1
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 135 1.7e-06 1
UNIPROTKB|Q1D948 - symbol:MXAN_2606 "Sensor histidine kin... 146 1.7e-06 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 119 1.8e-06 1
UNIPROTKB|Q9KLN9 - symbol:VC_A0704 "Phosphoglycerate tran... 141 1.9e-06 1
TIGR_CMR|VC_A0704 - symbol:VC_A0704 "phosphoglycerate tra... 141 1.9e-06 1
TIGR_CMR|DET_0170 - symbol:DET_0170 "DNA-binding response... 134 2.2e-06 1
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 118 2.3e-06 1
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 118 2.3e-06 1
TAIR|locus:2172545 - symbol:COL5 "CONSTANS-like 5" specie... 138 2.7e-06 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 127 2.8e-06 1
UNIPROTKB|Q9KS16 - symbol:VC_1445 "Sensor histidine kinas... 141 2.9e-06 1
TIGR_CMR|VC_1445 - symbol:VC_1445 "sensor histidine kinas... 141 2.9e-06 1
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 117 3.0e-06 1
TIGR_CMR|GSU_1102 - symbol:GSU_1102 "DNA-binding response... 132 3.3e-06 1
TAIR|locus:2090374 - symbol:ASML2 "activator of spomin::L... 134 3.5e-06 2
TAIR|locus:2040282 - symbol:RR3 "response regulator 3" sp... 118 3.6e-06 2
UNIPROTKB|P0AFJ5 - symbol:phoB "PhoB transcriptional dual... 132 3.6e-06 1
UNIPROTKB|Q9KU11 - symbol:VC_0719 "DNA-binding response r... 132 3.6e-06 1
TIGR_CMR|VC_0719 - symbol:VC_0719 "DNA-binding response r... 132 3.6e-06 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 142 3.6e-06 1
TAIR|locus:2047246 - symbol:COL3 "CONSTANS-like 3" specie... 135 3.8e-06 1
TIGR_CMR|BA_1312 - symbol:BA_1312 "DNA-binding response r... 131 4.2e-06 1
TIGR_CMR|BA_3229 - symbol:BA_3229 "DNA-binding response r... 131 4.3e-06 1
TIGR_CMR|BA_0651 - symbol:BA_0651 "DNA-binding response r... 131 4.4e-06 1
TIGR_CMR|CHY_0606 - symbol:CHY_0606 "DNA-binding response... 131 4.5e-06 1
TIGR_CMR|BA_4920 - symbol:BA_4920 "DNA-binding response r... 131 4.7e-06 1
UNIPROTKB|O53894 - symbol:mprA "Response regulator MprA" ... 131 4.8e-06 1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 134 4.9e-06 1
TIGR_CMR|CHY_2047 - symbol:CHY_2047 "DNA-binding response... 131 4.9e-06 1
UNIPROTKB|Q9KRK2 - symbol:VC_1638 "DNA-binding response r... 130 5.0e-06 1
TIGR_CMR|VC_1638 - symbol:VC_1638 "DNA-binding response r... 130 5.0e-06 1
TIGR_CMR|GSU_2534 - symbol:GSU_2534 "sensory box/response... 138 5.4e-06 2
TIGR_CMR|GSU_2041 - symbol:GSU_2041 "sigma-54 dependent D... 137 5.6e-06 1
TIGR_CMR|GSU_0963 - symbol:GSU_0963 "sigma-54 dependent D... 137 5.8e-06 1
UNIPROTKB|Q3JZR1 - symbol:csrR "DNA-binding response regu... 130 6.2e-06 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 114 6.3e-06 1
UNIPROTKB|P0AE88 - symbol:cpxR "CpxR transcriptional dual... 130 6.5e-06 1
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia... 136 6.9e-06 1
TIGR_CMR|BA_0996 - symbol:BA_0996 "sensor histidine kinas... 140 7.0e-06 1
TIGR_CMR|SPO_1679 - symbol:SPO_1679 "DNA-binding response... 130 7.3e-06 1
TAIR|locus:2074587 - symbol:COL2 "CONSTANS-like 2" specie... 134 7.3e-06 1
UNIPROTKB|P52076 - symbol:qseB "QseB-Phosphorylated DNA-b... 128 8.8e-06 1
TIGR_CMR|BA_0577 - symbol:BA_0577 "response regulator" sp... 129 9.2e-06 1
TIGR_CMR|GSU_1129 - symbol:GSU_1129 "sigma-54 dependent D... 135 9.3e-06 1
TIGR_CMR|CPS_4597 - symbol:CPS_4597 "transcriptional regu... 129 9.9e-06 1
TIGR_CMR|DET_0177 - symbol:DET_0177 "DNA-binding response... 128 1.0e-05 1
UNIPROTKB|Q8EEQ6 - symbol:cheY "Chemotaxis signal transdu... 112 1.0e-05 1
WARNING: Descriptions of 151 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 782 (280.3 bits), Expect = 7.9e-129, Sum P(2) = 7.9e-129
Identities = 171/289 (59%), Positives = 194/289 (67%)
Query: 6 MNLNKECSGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSP 65
M+LN EC G GDGFIDRS+VRILLCDNDS S VF+LL +CSYQVT+V+S
Sbjct: 1 MDLNGECKG---------GDGFIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSA 51
Query: 66 RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125
RQVIDALNAEG DID+ILAE+DLPM KG+KML+YITRDK+L+RIPVIMMS QDEV VVVK
Sbjct: 52 RQVIDALNAEGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVK 111
Query: 126 CLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNST 185
CL+LGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKN+LSYDFDLV SD SD NTNST
Sbjct: 112 CLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLSYDFDLVGSDQSDPNTNST 171
Query: 186 TLFXXXXXXXXXXXXNPEIGMSTHQXXXXXXXXX------------XXXXXXXXXXXXXX 233
LF NP+ G +HQ
Sbjct: 172 NLFSDDTDDRSLRSTNPQRGNLSHQENEWSVATAPVHARDGGLGADGTATSSLAVTAIEP 231
Query: 234 PID---ASECGPDVPGISDRR-TAGPKKIELRIGESSAFFTYVKSNMPR 278
P+D S P + + ++ PKK L+IGESSAFFTYVKS + R
Sbjct: 232 PLDHLAGSHHEPMKRNSNPAQFSSAPKKSRLKIGESSAFFTYVKSTVLR 280
Score = 503 (182.1 bits), Expect = 7.9e-129, Sum P(2) = 7.9e-129
Identities = 128/281 (45%), Positives = 165/281 (58%)
Query: 273 KSNMPRDSS--PRIVNVDDSAAQNVRMEEKCQPCCQQVVSDTRIHENGEAWENY-SQGED 329
KS + R + P +VN + S + EK Q + +++T+ E Y SQGE
Sbjct: 325 KSTVLRTNGQDPPLVNGNGSHHLHRGAAEKFQVVASEGINNTKQAHRSRGTEQYHSQGET 384
Query: 330 FRSSSSVPDSLSMERSSTPPTDFPQN-RNFKDEKFFQPQMPPTRNEP-----------PQ 377
++ +S P SL ERS T PT + RN+++ PQ+ R++ P
Sbjct: 385 LQNGASYPHSL--ERSRTLPTSMESHGRNYQEGNMNIPQVAMNRSKDSSQVDGSGFSAPN 442
Query: 378 ATYQYYMSGAMNQVMLPSSSAQMYQKNLHELQNHSMLPQYNH-LPQCVP-HVNGMASFPY 435
A Y YYM G MNQVM+ S++ M+PQY H +P C P H NGM +PY
Sbjct: 443 A-YPYYMHGVMNQVMMQSAA---------------MMPQYGHQIPHCQPNHPNGMTGYPY 486
Query: 436 Y--PIN-------MCLQPGQVSA--NSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKE 484
Y P+N M LQ GQ+S +SW GN PS EV++NK+DRRE AL+KFR+KR +
Sbjct: 487 YHHPMNTSLQHSQMSLQNGQMSMVHHSWSPAGNPPSNEVRVNKLDRREEALLKFRRKRNQ 546
Query: 485 RCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQP 525
RCFDKKIRYVNRKRLAERRPRV+GQFVRK+NGVNVDLNGQP
Sbjct: 547 RCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLNGQP 587
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 296 (109.3 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 54/128 (42%), Positives = 84/128 (65%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
++ ++ +R+LL ++D ++ + +LL KC Y+V +V + L + +IDLIL E+
Sbjct: 31 YLPKTVLRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTEL 90
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
DLP G +L + + + IPVIMMS+QD + +V+KC+ GAADYL+KP+R NEL N
Sbjct: 91 DLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKN 150
Query: 147 LWTHMWRR 154
LW H+WRR
Sbjct: 151 LWQHVWRR 158
Score = 193 (73.0 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 445 GQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRP 504
GQ S+ P S + + ++ +REAAL+KFR KRK+RCFDKK+RY +RK+LAE+RP
Sbjct: 394 GQSSSTEKPK--EEESAKQRWSR-SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRP 450
Query: 505 RVRGQFVRKVN 515
RV+GQFVR VN
Sbjct: 451 RVKGQFVRTVN 461
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 260 (96.6 bits), Expect = 3.2e-36, Sum P(2) = 3.2e-36
Identities = 54/128 (42%), Positives = 75/128 (58%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
F+ +R+LL +ND + V +LL CSY+V + Q L + ID++L EV
Sbjct: 72 FLHVRTIRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEV 131
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+P G+ +L I K + IPVIMMS+ D + +V KCL GA D+LVKP+R NEL
Sbjct: 132 IMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKI 191
Query: 147 LWTHMWRR 154
LW H+WRR
Sbjct: 192 LWQHVWRR 199
Score = 207 (77.9 bits), Expect = 3.2e-36, Sum P(2) = 3.2e-36
Identities = 78/273 (28%), Positives = 123/273 (45%)
Query: 260 LRIGESSAFFTY-VKSNMPRDSSPRI--VNVDDSAAQNVRMEEKCQPCCQQVVSDTRIHE 316
LR E SAF Y SN + S + ++ D+ +Q++ + + C ++++ H
Sbjct: 455 LRRSEGSAFSRYNPASNANKISGGNLGSTSLQDNNSQDLIKKTEAAYDCHSNMNESLPHN 514
Query: 317 NGEAWENYSQGEDFRSSSSVPDSLSMERSSTPPTDFPQNRNFKDEKFFQPQMPPTRNEPP 376
+ ++ +F SS+ ++ + + P + + K F QP P +
Sbjct: 515 H----RSHVGSNNFDMSSTTENN-AFTKPGAPKVSSAGSSSVKHSSF-QPL--PCDHHNN 566
Query: 377 QATYQYYMSGAMNQVMLPSSSAQMYQKNLHELQNHSMLPQYNHLPQCVPH-VNG----MA 431
A+Y ++ S+ +Y + + E N+++ N H NG
Sbjct: 567 HASYNLVHVAERKKLPPQCGSSNVYNETI-EGNNNTVNYSVNGSVSGSGHGSNGPYGSSN 625
Query: 432 SFPYYPINMCLQPGQ-VSAN---SWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCF 487
+NM G + N S G+ NK+ +REAAL KFRQKRKERCF
Sbjct: 626 GMNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCF 685
Query: 488 DKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVD 520
KK+RY +RK+LAE+RPRVRGQFVRK D
Sbjct: 686 RKKVRYQSRKKLAEQRPRVRGQFVRKTAAATDD 718
Score = 59 (25.8 bits), Expect = 9.8e-21, Sum P(2) = 9.8e-21
Identities = 29/112 (25%), Positives = 45/112 (40%)
Query: 246 GISDRRTAGPKKIELRIGESS---AFFTYVKSNMPRDSSPRIVN----VDDSAAQNVRME 298
G SD G + G S A ++ K + D SPR V+ VD + AQ V
Sbjct: 232 GSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAVSLWDRVDSTCAQVVHSN 291
Query: 299 EKCQPCCQQVV--SDTRIHENGEAWENYSQGEDFRSSSSVPDSLSMERSSTP 348
+ P Q V ++ E+ + +E+ + G D S L++E P
Sbjct: 292 PEF-PSNQLVAPPAEKETQEHDDKFEDVTMGRDLEISIRRNCDLALEPKDEP 342
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 225 (84.3 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 50/144 (34%), Positives = 81/144 (56%)
Query: 13 SGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDAL 72
SG G S S D F + +R+L+ D+D + +L+ C Y+VT + L
Sbjct: 12 SGTAAGGSNS--DPF--PANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLL 67
Query: 73 NAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132
+ D+++++V +P G K+L+++ + +L PVIMMSA D SVV+K + GA
Sbjct: 68 RKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAV 124
Query: 133 DYLVKPLRTNELLNLWTHMWRRRR 156
DYL+KP+R L N+W H+ R++R
Sbjct: 125 DYLIKPVRIEALKNIWQHVVRKKR 148
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 218 (81.8 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 42/125 (33%), Positives = 75/125 (60%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L D+D + +LL +C Y VT+ + ++ L + DL++++VD+P
Sbjct: 17 MRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMD 76
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G K+L+ + + +L PVIM+SA + V+K ++ GA DYL+KP+R EL N+W H+
Sbjct: 77 GFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVV 133
Query: 153 RRRRM 157
R+ ++
Sbjct: 134 RKSKL 138
>TAIR|locus:2062749 [details] [associations]
symbol:AT2G46670 "AT2G46670" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 GenomeReviews:CT485783_GR UniGene:At.65052
EMBL:AB493594 IPI:IPI00540845 RefSeq:NP_182190.2
EnsemblPlants:AT2G46670.1 GeneID:819279 KEGG:ath:AT2G46670
TAIR:At2g46670 PhylomeDB:C0SV91 Genevestigator:Q3EBF0
Uniprot:C0SV91
Length = 183
Score = 193 (73.0 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 445 GQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRP 504
GQ S+ P S + + ++ +REAAL+KFR KRK+RCFDKK+RY +RK+LAE+RP
Sbjct: 109 GQSSSTEKPK--EEESAKQRWSR-SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRP 165
Query: 505 RVRGQFVRKVN 515
RV+GQFVR VN
Sbjct: 166 RVKGQFVRTVN 176
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 219 (82.2 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 49/146 (33%), Positives = 80/146 (54%)
Query: 14 GAGIG-NSKSSGDGFIDR--SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVID 70
G+ G N G+ ++ S +R+L+ D+D + +L C Y+VT +
Sbjct: 15 GSSSGRNQGGGGETVVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALS 74
Query: 71 ALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLG 130
L D+++++V +P G K+L+++ + +L PVIMMSA D SVV+K + G
Sbjct: 75 LLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHG 131
Query: 131 AADYLVKPLRTNELLNLWTHMWRRRR 156
A DYL+KP+R L N+W H+ R+RR
Sbjct: 132 AVDYLIKPVRMEALKNIWQHVVRKRR 157
Score = 38 (18.4 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 19/94 (20%), Positives = 38/94 (40%)
Query: 325 SQGEDFRSSSSVPDSLSMERSSTPPTDFPQNRNFKDEKFFQPQMPPTRNEPPQATYQYYM 384
S+ F +++P+S + +S + + FQP++P N P A+
Sbjct: 474 SERSGFSGRNNIPESSRVLPTSYTNLTTQHSSSSMPYNNFQPELPV--NSFPLAS----A 527
Query: 385 SGAMNQVMLPSSSAQMYQKNLHELQNHSMLPQYN 418
G + +P A YQ+ ++ + P Y+
Sbjct: 528 PG----ISVPVRKATSYQEEVNSSEAGFTTPSYD 557
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 216 (81.1 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 44/123 (35%), Positives = 72/123 (58%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L D+D + SLL C Y VT+ ++ ++ L + DL++++VD+P
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMD 76
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G K+L+ + + +L PVIM+SA + V+K + GA DYL+KP+R EL N+W H+
Sbjct: 77 GFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVV 133
Query: 153 RRR 155
R R
Sbjct: 134 RSR 136
Score = 39 (18.8 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 321 WENYSQGEDFRSSSSVPDSLSMERSSTPPTDFPQNRNFKDEKFFQP 366
W N S S S +T P F +N +F QP
Sbjct: 474 WNNVSSSYSIPFCDSANTLSSPALDTTNPRAFCRNTDFDSNTNVQP 519
Score = 38 (18.4 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 345 SSTPPTDFPQNRNFKDEKFFQPQMPPTRNEP 375
SST P N N + +F +P +R +P
Sbjct: 441 SSTHPPPPAHNSNSINHQFDVSPLPHSRPDP 471
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 211 (79.3 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 43/123 (34%), Positives = 75/123 (60%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ D+D + +L KCSY+VT+ R+ + L D+++++V++P
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMD 70
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G K+L+++ + +L PVIMMS E S V+K ++ GA DYL+KP+R EL +W H+
Sbjct: 71 GFKLLEHVGLELDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 153 RRR 155
R++
Sbjct: 128 RKK 130
Score = 39 (18.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 476 IKFRQKRKERCFDKKI 491
+ F +KRK+ F+KK+
Sbjct: 164 VSFGKKRKDFDFEKKL 179
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 197 (74.4 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 38/123 (30%), Positives = 76/123 (61%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ D+D + + LL+KCSY+VT+ ++ R+ + + +DL++++ P
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL +L+ +T IP ++M++ + + V+K + GA D+L+KP+R EL N+W H++
Sbjct: 71 GLLILQEVTSKFG---IPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 153 RRR 155
R++
Sbjct: 128 RKQ 130
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 197 (74.4 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 38/123 (30%), Positives = 76/123 (61%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ D+D + + LL+KCSY+VT+ ++ R+ + + +DL++++ P
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL +L+ +T IP ++M++ + + V+K + GA D+L+KP+R EL N+W H++
Sbjct: 71 GLLILQEVTSKFG---IPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 153 RRR 155
R++
Sbjct: 128 RKQ 130
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 189 (71.6 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 42/125 (33%), Positives = 69/125 (55%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S +RIL+ D+D++ + +L++ YQVT + L DL+L++V +P
Sbjct: 9 SGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPG 68
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G +L+ + E+ +PVIMMS + V+ + GA DYL+KP+R EL N+W H
Sbjct: 69 MNGYNLLQQVGL-LEMD-LPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQH 126
Query: 151 MWRRR 155
+ RR+
Sbjct: 127 VVRRK 131
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 166 (63.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 35/113 (30%), Positives = 70/113 (61%)
Query: 36 LLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L +DS V S L++ S Y+VT+V S ++ ++ L+ + ++ +I+ + +P G
Sbjct: 13 VLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLD-RNVHMIITDYCMPEMTGF 71
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+LK + EL+ IPV++MS+++ + + +CL GA D+L+KP+R +++ L
Sbjct: 72 DLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRL 124
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 159 (61.0 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 36/121 (29%), Positives = 76/121 (62%)
Query: 30 RSKVRILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEG--SDIDLILAEV 86
+S++ +L D DS+ AV + +++ S Y+VT+V S + ++ L G ++++I+ +
Sbjct: 47 QSEMHVLAVD-DSSVDRAVIAKILRSSKYRVTTVESATRALELL-CLGLVPNVNMIITDY 104
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+P G ++LK + +L+ IPV++MS+++ + + +CL GA D+L+KP+R +++
Sbjct: 105 WMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSR 164
Query: 147 L 147
L
Sbjct: 165 L 165
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 161 (61.7 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 43/127 (33%), Positives = 72/127 (56%)
Query: 30 RSKVRILLCDNDSNSSDAVFSLLVK---C--SYQVTSVRSPRQVID--ALNAEGSD--ID 80
R R+LL D DS V LL+ C S+ V +V S ++ ++ L EG + ID
Sbjct: 5 RGVTRVLLVD-DSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAID 63
Query: 81 LILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140
++L + +P G ++LK I L+ IPVI+MS+++E + +C+ GA D++VKPL+
Sbjct: 64 MVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQ 123
Query: 141 TNELLNL 147
+ ++ L
Sbjct: 124 SKDVQRL 130
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 152 (58.6 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 42/122 (34%), Positives = 76/122 (62%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
++IL+ D++S+ + + L Y+V + R+V++ N EG D+ LIL +V LP T
Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWN-EGPDV-LIL-DVMLPDTD 57
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G ++L+ + R+K+ + IPV+M++A+ +++ + L+LGA DY+ KP EL+ +M
Sbjct: 58 GYELLR-LFREKD-RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115
Query: 153 RR 154
RR
Sbjct: 116 RR 117
>UNIPROTKB|Q8ECB3 [details] [associations]
symbol:flrC "Two component signal transduction system
controlling flagella biosynthesis Sigma54-dependent response
regulator FlrC" species:211586 "Shewanella oneidensis MR-1"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 162 (62.1 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 36/116 (31%), Positives = 63/116 (54%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S+ ++LL ++D++ +A+ L+ Y V S + I AL DL++++V +P
Sbjct: 2 SEAKLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALKQH--QFDLVISDVQMPG 59
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
GL +L Y+ + ++PV++M+A + V ++LGA DYL KP LLN
Sbjct: 60 IGGLGLLNYLQQHHP--KLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|SO_3230 [details] [associations]
symbol:SO_3230 "flagellar regulatory protein C"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092 KO:K10943
ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 162 (62.1 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 36/116 (31%), Positives = 63/116 (54%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S+ ++LL ++D++ +A+ L+ Y V S + I AL DL++++V +P
Sbjct: 2 SEAKLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALKQH--QFDLVISDVQMPG 59
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
GL +L Y+ + ++PV++M+A + V ++LGA DYL KP LLN
Sbjct: 60 IGGLGLLNYLQQHHP--KLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 31/122 (25%), Positives = 72/122 (59%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K +IL+ D++ N+ + LL + ++V SV + + ++ L ++++I+ ++++P
Sbjct: 6 KKKILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQR--EVNVIVTDINMPEM 63
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G+ L+ + +K R VIM++A V ++ + LGA +Y+ KP++ +EL ++ T +
Sbjct: 64 NGITFLREL--NKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKSILTKI 121
Query: 152 WR 153
++
Sbjct: 122 FK 123
>TIGR_CMR|CPS_0681 [details] [associations]
symbol:CPS_0681 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_267431.1 ProteinModelPortal:Q488T3
STRING:Q488T3 GeneID:3522148 KEGG:cps:CPS_0681 PATRIC:21464685
BioCyc:CPSY167879:GI48-768-MONOMER Uniprot:Q488T3
Length = 246
Score = 153 (58.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 38/112 (33%), Positives = 66/112 (58%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
ILL ++D + +D V L + + VT V VID + +DI +L +V LP G+
Sbjct: 4 ILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKKNTTDI--VLLDVMLPGLNGI 61
Query: 95 KMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELL 145
++ + I + ++ +++P+IM++A+ DE V+ L GA DY++KP+R LL
Sbjct: 62 EVCRLIRQHEQSKQVPIIMLTARADEFDEVIG-LEAGADDYVIKPVRPRALL 112
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/110 (28%), Positives = 62/110 (56%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S +L+ D+ V L++ + +VT+V S Q + L++E D+D+I+++ +P
Sbjct: 2 SSPHVLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFLDSE-HDVDMIVSDYCMPD 60
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140
G +L + + +L +PV++ S+ + + KCL GA DY++KP++
Sbjct: 61 MTGYNLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVK 110
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 149 (57.5 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 47/146 (32%), Positives = 76/146 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RILL D+D S+ + LL +++T +Q ++ A +D DLIL +V LP G
Sbjct: 3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLEL--ALATDYDLILLDVMLPKLNG 60
Query: 94 LKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
++L+ + + K+ PV+M++A+ DE+ VV L +GA DYL KP EL+ +
Sbjct: 61 FEVLRALRQHKQT---PVLMLTARGDEIDRVVG-LEIGADDYLPKPFNDRELIARIRAII 116
Query: 153 RRRRMLGLAEKNILSYDFDLVASDPS 178
RR + + +F + DPS
Sbjct: 117 RRSHLTAQEIHATPAQEFGDLRLDPS 142
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 149 (57.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 44/137 (32%), Positives = 72/137 (52%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+RILL ++D ++A+ LV+ + V + + + AL D +++ ++ LP
Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSHD--MVILDLGLPDID 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL +LK I K +PVI+++A+D + VK L GA DYL KP ELL +
Sbjct: 59 GLLVLKEIRAKKN--DLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIE 116
Query: 153 RRRRMLGLAEKNILSYD 169
RR LG A ++++ D
Sbjct: 117 RR---LGTASSSMITID 130
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 142 (55.0 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 45/167 (26%), Positives = 84/167 (50%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEG---------SD-----ID 80
+L D+ + LL S+QVT+V S + ++ L SD ++
Sbjct: 11 VLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQEVAVN 70
Query: 81 LILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140
LI+ + +P G +LK I L+ IPV++MS+ + S + +CL GA ++ +KP+R
Sbjct: 71 LIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKPVR 130
Query: 141 TNELLNLWTHMWRRR-RMLGLAEKNILSYDFDLVASDPSDANTNSTT 186
+++ L H+ + R + E+N+ S +S+P+ N++S+T
Sbjct: 131 LSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNSSNPTSENSSSST 177
>TIGR_CMR|CBU_1227 [details] [associations]
symbol:CBU_1227 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483 RefSeq:NP_820222.2
ProteinModelPortal:Q83CA1 PRIDE:Q83CA1 GeneID:1209132
KEGG:cbu:CBU_1227 PATRIC:17931191 OMA:THETFDI
ProtClustDB:CLSK914625 BioCyc:CBUR227377:GJ7S-1215-MONOMER
Uniprot:Q83CA1
Length = 232
Score = 147 (56.8 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 38/124 (30%), Positives = 65/124 (52%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+LL ++D D + + L + + + VR + D L++ D+I+ ++ LP
Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL +LK I R+K PV++++A+D V +K L G+ DY+ KP EL M
Sbjct: 70 GLDVLKTI-REKN-DPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQ 127
Query: 153 RRRR 156
RR +
Sbjct: 128 RRSK 131
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 146 (56.5 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 37/115 (32%), Positives = 68/115 (59%)
Query: 33 VRILLCDNDSNSSDAVFSLL-VKC-SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
+++LL ++D+ D + ++ + C + +V S S R+ I+++ E + D+IL ++ LP
Sbjct: 1 MKLLLIEDDAEIVDVISTIFQISCPNSRVISASSGRKGIESV--ESVNPDIILLDLGLPD 58
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
G +LK I + +P+I+++ + + S VV+ L LGA DY+ KP R ELL
Sbjct: 59 MNGFDVLKQI---RNFSDVPIIILTVRGDESDVVRGLTLGANDYITKPFRQMELL 110
>TIGR_CMR|GSU_0104 [details] [associations]
symbol:GSU_0104 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_951166.1
ProteinModelPortal:Q74GY9 GeneID:2688136 KEGG:gsu:GSU0104
PATRIC:22022954 OMA:NVAVARD ProtClustDB:CLSK309460
BioCyc:GSUL243231:GH27-65-MONOMER Uniprot:Q74GY9
Length = 129
Score = 131 (51.2 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDID--LILAEVDL 88
+K +L+ DN + A+ +L V R Q + L +D L+L ++ L
Sbjct: 3 TKTILLVEDNPDDEFLALRALRRHGLQDVVVARDGEQAVGQLFEAAPPLDPWLVLLDLKL 62
Query: 89 PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
P GL++L+ I ++ + PVI++S+ E + VVKC LG YL KP+ +++ L
Sbjct: 63 PKMNGLEVLRTIRSEERTRHTPVIVISSSQEETDVVKCRELGVLAYLTKPIDGEKIMAL 121
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 145 (56.1 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 42/166 (25%), Positives = 83/166 (50%)
Query: 11 ECSGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVID 70
E G GIG +S +D +V +L D+ + LL S +VT+V S + ++
Sbjct: 14 EMIGIGIGELESPP---LDSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALE 70
Query: 71 ALNAEGSD---------IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVS 121
L + +DLI+ + +P G ++LK I + +PV++MS+++ ++
Sbjct: 71 FLGLDDDKAAVEFDRLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMT 130
Query: 122 VVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILS 167
+ +CL GA D+L+KP++ ++ L +++ R ++ K L+
Sbjct: 131 RIDRCLEEGAEDFLLKPVKLADVKRLRSYLTRDVKVAAEGNKRKLT 176
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 141 (54.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/117 (26%), Positives = 67/117 (57%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
++ D+ S + +LL + Y+ S ++ ++ L +E ++ +I+ + +P G
Sbjct: 93 VMAVDDSSVDRAVITALLRRSKYR----DSGKRALEILGSE-PNVSMIITDYWMPEMTGY 147
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
+LK I EL++IPV++MS+++ + + +CL GA D+L+KP+R ++ + + M
Sbjct: 148 DLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKPVRPADISRITSRM 204
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 42/148 (28%), Positives = 80/148 (54%)
Query: 13 SGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDAL 72
S GIG +S+ +D +V +L D+ + LL S +VT+V S + ++ L
Sbjct: 17 SVGGIGGIESAP---LDLDEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFL 73
Query: 73 ---NAEGS---D---IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV 123
N + S D +DLI+ + +P G ++LK I + +PV++MS+++ ++ +
Sbjct: 74 GLDNEKASAEFDRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRI 133
Query: 124 VKCLRLGAADYLVKPLRTNELLNLWTHM 151
+CL GA D+L+KP++ ++ L +H+
Sbjct: 134 DRCLEEGAQDFLLKPVKLADVKRLRSHL 161
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 152 (58.6 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 40/137 (29%), Positives = 68/137 (49%)
Query: 19 NSKSSGDGFIDRSKVRILL--CDNDSNSSDAVF--SLLVKCSYQVTSVRSPRQVIDALNA 74
N S + F KV +LL CD+D + S A S L Y VT+ + + A+
Sbjct: 6 NDLSKWENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVK 65
Query: 75 EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134
+ + EV+ M+ + K++ K++ +P IM+S ++ +KC+ LGA ++
Sbjct: 66 NPESFHIAIVEVN--MSAESESFKFLEAAKDV--LPTIMISTDHCITTTMKCIALGAVEF 121
Query: 135 LVKPLRTNELLNLWTHM 151
L KPL +L N+W H+
Sbjct: 122 LQKPLSPEKLKNIWQHV 138
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 151 (58.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 36/115 (31%), Positives = 68/115 (59%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+++LL ++D +A+ L+ + +V S + ++A+ AE L++++V++P
Sbjct: 3 IKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAE--PFSLVVSDVNMPGMD 60
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
G ++L + R ++ Q +PV++M+A V V+ +R GAADYLVKP LL+L
Sbjct: 61 GHQLLGLL-RARQPQ-LPVLLMTAHGAVERAVEAMRQGAADYLVKPFEPRALLDL 113
>TIGR_CMR|BA_5715 [details] [associations]
symbol:BA_5715 "DNA-binding response regulator YycF"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847861.1 RefSeq:YP_022401.1 RefSeq:YP_031556.1
ProteinModelPortal:Q81JJ0 SMR:Q81JJ0 IntAct:Q81JJ0 DNASU:1085472
EnsemblBacteria:EBBACT00000008903 EnsemblBacteria:EBBACT00000016684
EnsemblBacteria:EBBACT00000023802 GeneID:1085472 GeneID:2816053
GeneID:2852841 KEGG:ban:BA_5715 KEGG:bar:GBAA_5715 KEGG:bat:BAS5319
KO:K07668 OMA:KEQESND ProtClustDB:CLSK2391406
BioCyc:BANT260799:GJAJ-5392-MONOMER
BioCyc:BANT261594:GJ7F-5568-MONOMER Uniprot:Q81JJ0
Length = 235
Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 41/131 (31%), Positives = 69/131 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D++ +D + L K +++ + I+ E D ++L ++ LP G
Sbjct: 5 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPD--MVLLDIMLPGKDG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
L++ + I + E+ P+IM++A+D E+ V+ L LGA DY+ KP T ELL
Sbjct: 63 LEVCREIRKSSEM---PIIMLTAKDSEIDKVLG-LELGADDYVTKPFSTRELLARVKANL 118
Query: 153 RRRRMLGLAEK 163
RR + G AEK
Sbjct: 119 RRHQQGGAAEK 129
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 139 (54.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 46/170 (27%), Positives = 87/170 (51%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSD---------IDL 81
++ +L D DS V L+K S +VT+V S + + L +G + ++L
Sbjct: 17 ELHVLAVD-DSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLKVNL 75
Query: 82 ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRT 141
I+ + +P G ++LK I L+ IPV++MS+++ + +C+ GA ++L+KP++
Sbjct: 76 IVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKL 135
Query: 142 NELLNLWTHMWR-----RRRMLGLAEKNILSYDFDLVASDPSDANTNSTT 186
++ L + R + L+ K IL D D S PS ++T+S++
Sbjct: 136 ADVKRLKELIMRGGEAEEGKTKKLSPKRILQNDID---SSPSSSSTSSSS 182
>TIGR_CMR|BA_4777 [details] [associations]
symbol:BA_4777 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
ProteinModelPortal:Q81L55 DNASU:1083888
EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
OMA:DISIQEM ProtClustDB:CLSK917419
BioCyc:BANT260799:GJAJ-4490-MONOMER
BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
Length = 230
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 40/111 (36%), Positives = 63/111 (56%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
ILL ++D + + V LVK +QVT + +D +GS DLI+ ++ +P GL
Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTY-LKGS-FDLIILDIMMPKLDGL 62
Query: 95 KMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNEL 144
++++ I +E +P++MMSA+D +V V L LGA DY+ KP EL
Sbjct: 63 EVVRII---REKSAVPILMMSAKDTDVDKAVG-LGLGADDYICKPFSMIEL 109
>UNIPROTKB|G3LTY8 [details] [associations]
symbol:phoB "Two-component regulator protein" species:636
"Edwardsiella tarda" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817 TIGRFAMs:TIGR02154
EMBL:JN543949 Uniprot:G3LTY8
Length = 229
Score = 141 (54.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 43/143 (30%), Positives = 72/143 (50%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+RIL+ ++++ D V +L + YQ S + L E DLIL + LP
Sbjct: 3 IRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQL-CEPYP-DLILLDWMLPGGS 60
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G++++K + R+ + IPV+M++A+ E V+ L +GA DY+ KP EL+ +
Sbjct: 61 GIQLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 153 RRRRMLGLAEK-NILSYDFDLVA 174
RR + L E N+ D V+
Sbjct: 121 RRISPMALEETINLQGLSLDPVS 143
>TAIR|locus:2007482 [details] [associations]
symbol:AT1G07050 "AT1G07050" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AY085907 EMBL:AK176556 EMBL:AB493438
IPI:IPI00532995 RefSeq:NP_563778.1 UniGene:At.42316 STRING:Q8LDM8
EnsemblPlants:AT1G07050.1 GeneID:837216 KEGG:ath:AT1G07050
TAIR:At1g07050 eggNOG:NOG283732 HOGENOM:HOG000090331
InParanoid:Q8LDM8 OMA:NMRREAS PhylomeDB:Q8LDM8
ProtClustDB:CLSN2687713 ArrayExpress:Q8LDM8 Genevestigator:Q8LDM8
Uniprot:Q8LDM8
Length = 195
Score = 135 (52.6 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 456 GNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 513
G P E K N RREA+++++++KR+ R F KKIRY RK A++RPR +G+FV++
Sbjct: 138 GEVPVIEEKRNM--RREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
>UNIPROTKB|Q747K4 [details] [associations]
symbol:GSU3261 "Response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0035556 "intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_954302.1
ProteinModelPortal:Q747K4 GeneID:2686384 KEGG:gsu:GSU3261
PATRIC:22029363 OMA:KLPRIDG ProtClustDB:CLSK743192
BioCyc:GSUL243231:GH27-3237-MONOMER Uniprot:Q747K4
Length = 150
Score = 124 (48.7 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 41/126 (32%), Positives = 69/126 (54%)
Query: 31 SKVRILLCDNDSNSSDAVFSL--LVKCSY--QVTSVRSPRQVIDALNAEGS--DIDL--- 81
SK+ ILL ++ N D V +L L K + VT VR + +D L GS D DL
Sbjct: 3 SKM-ILLVED--NPDDEVLTLRALGKHAITPDVTVVRDGVEALDFLFGTGSYSDRDLSIM 59
Query: 82 ---ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
+L ++ LP GL++L+ + D+ + +PV++ ++ +E +++C LGA Y+ KP
Sbjct: 60 PKLVLLDLKLPKVDGLEVLRRLRADQRTRLLPVVVFTSSNEEQDILECHNLGANSYIRKP 119
Query: 139 LRTNEL 144
+ N+L
Sbjct: 120 VDFNQL 125
>TIGR_CMR|GSU_3261 [details] [associations]
symbol:GSU_3261 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957
RefSeq:NP_954302.1 ProteinModelPortal:Q747K4 GeneID:2686384
KEGG:gsu:GSU3261 PATRIC:22029363 OMA:KLPRIDG ProtClustDB:CLSK743192
BioCyc:GSUL243231:GH27-3237-MONOMER Uniprot:Q747K4
Length = 150
Score = 124 (48.7 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 41/126 (32%), Positives = 69/126 (54%)
Query: 31 SKVRILLCDNDSNSSDAVFSL--LVKCSY--QVTSVRSPRQVIDALNAEGS--DIDL--- 81
SK+ ILL ++ N D V +L L K + VT VR + +D L GS D DL
Sbjct: 3 SKM-ILLVED--NPDDEVLTLRALGKHAITPDVTVVRDGVEALDFLFGTGSYSDRDLSIM 59
Query: 82 ---ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
+L ++ LP GL++L+ + D+ + +PV++ ++ +E +++C LGA Y+ KP
Sbjct: 60 PKLVLLDLKLPKVDGLEVLRRLRADQRTRLLPVVVFTSSNEEQDILECHNLGANSYIRKP 119
Query: 139 LRTNEL 144
+ N+L
Sbjct: 120 VDFNQL 125
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 136 (52.9 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 39/178 (21%), Positives = 84/178 (47%)
Query: 22 SSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSD--- 78
+ GD + ++ +L D+ + LL S +VT+V S + + L +G
Sbjct: 13 AGGDLTVTTPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGAS 72
Query: 79 ------IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132
++LI+ + +P G +LK I + +PV++MS+++ + + +CL+ GA
Sbjct: 73 NLKDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAE 132
Query: 133 DYLVKPLRTNELLNLWTHMWRRR----RMLGLAEKNILSYDFDLVASDPSDANTNSTT 186
++L+KP++ ++ + + R ++L + K L D D +S D + ++
Sbjct: 133 EFLLKPVKLADVKRIKQLIMRNEAEECKILSHSNKRKLQEDSDTSSSSHDDTSIKDSS 190
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 123 (48.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ + V + L +YQVT + R+ +D +++ D IL + ++P G
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
L ++K + R P+IM++ + + + +GA ++VKP +LL
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKLL 113
>TIGR_CMR|DET_0130 [details] [associations]
symbol:DET_0130 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034820
RefSeq:YP_180880.1 ProteinModelPortal:Q3ZA69 STRING:Q3ZA69
GeneID:3230504 KEGG:det:DET0130 PATRIC:21607349 OMA:QIVQAKN
ProtClustDB:CLSK837608 BioCyc:DETH243164:GJNF-130-MONOMER
Uniprot:Q3ZA69
Length = 123
Score = 123 (48.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 31/114 (27%), Positives = 58/114 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K++IL+ D++ + V +L K YQ+ ++ + + + D DLIL ++ +P
Sbjct: 3 KMKILIADDEEHVRQLVCGILDK-DYQIVQAKNGEEAVK--ESREQDFDLILMDIMMPKL 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNEL 144
GL + DK+ IP++M++ E++ + +LGA Y+ KP EL
Sbjct: 60 DGLAACCMLKGDKQTSAIPIVMLTGVGYELNKKLS-QQLGADGYITKPFSPREL 112
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 123 (48.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ + V + L +YQVT + R+ +D +++ D IL + ++P G
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
L ++K + R P+IM++ + + + +GA ++VKP +LL
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKLL 113
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 122 (48.0 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 31/116 (26%), Positives = 58/116 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K RIL+ +++ + LL Y V V + +D + A + DLI+ ++ LP
Sbjct: 3 KKRILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAA--TPPDLIILDIMLPGM 60
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
G ++ + I D + IPV+M++A+ K L GA+ Y+ KP ++ ++ +
Sbjct: 61 DGFEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKSARIIEI 116
>UNIPROTKB|Q9KNN9 [details] [associations]
symbol:VC_2692 "Transcriptional regulator CpxR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 137 (53.3 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 44/131 (33%), Positives = 70/131 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
ILL D+D+ + + +L ++++ + A++ E IDLIL +V +P G+
Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE---IDLILLDVMMPKLNGM 60
Query: 95 KMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+ LK R +E PV+M++A+ +E+ V+ L LGA DYL KP ELL + R
Sbjct: 61 ETLK---RLREKWATPVLMLTAKGEEIDRVIG-LELGADDYLPKPFSDRELLARIRAILR 116
Query: 154 RRRMLGLAEKN 164
R + GL KN
Sbjct: 117 RTQN-GLTPKN 126
>TIGR_CMR|VC_2692 [details] [associations]
symbol:VC_2692 "transcriptional regulator CpxR" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 137 (53.3 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 44/131 (33%), Positives = 70/131 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
ILL D+D+ + + +L ++++ + A++ E IDLIL +V +P G+
Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE---IDLILLDVMMPKLNGM 60
Query: 95 KMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+ LK R +E PV+M++A+ +E+ V+ L LGA DYL KP ELL + R
Sbjct: 61 ETLK---RLREKWATPVLMLTAKGEEIDRVIG-LELGADDYLPKPFSDRELLARIRAILR 116
Query: 154 RRRMLGLAEKN 164
R + GL KN
Sbjct: 117 RTQN-GLTPKN 126
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 121 (47.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/108 (25%), Positives = 59/108 (54%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 36/115 (31%), Positives = 62/115 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+ +LL ++D + +A+ L Y +V S + + A AE L++++V++P
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVA--AEAQPFSLVISDVNMPGMD 60
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
G ++L + R + Q +PV++M+A V V +R GAADYLVKP L+ L
Sbjct: 61 GHQLLSLL-RSRHPQ-LPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIAL 113
>UNIPROTKB|Q884Y0 [details] [associations]
symbol:fleR "Sigma-54 dependent transcriptional
regulator/response regulator FleR" species:223283 "Pseudomonas
syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0030092 "regulation of flagellum
assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
Length = 471
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 36/115 (31%), Positives = 62/115 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+ +LL ++D + +A+ L Y +V S + + A AE L++++V++P
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVA--AEAQPFSLVISDVNMPGMD 60
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
G ++L + R + Q +PV++M+A V V +R GAADYLVKP L+ L
Sbjct: 61 GHQLLSLL-RSRHPQ-LPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIAL 113
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/109 (28%), Positives = 63/109 (57%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
+++++L+ D + S + S L Y VTSV S + + +NA + D+++ +++LP
Sbjct: 5 TEIQVLVVDESAPSRAFIASTLENGGYIVTSVASGEEAVHEVNA--APFDILVTDINLPG 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
GL +LK + +D + V+++++ +K LRLGA D+++KP+
Sbjct: 63 MSGLNLLKLL-KDS-FPDLEVVIVTSNASSFTAIKALRLGAYDFIIKPV 109
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/106 (26%), Positives = 57/106 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
++IL+ D+ S V +LL + T + +G D D ++ + ++P +
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG-DFDFVVTDWNMPGMQ 67
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
G+ +LK I D+EL+ +PV+M++A+ + +++ + G Y+VKP
Sbjct: 68 GIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKP 113
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/106 (26%), Positives = 57/106 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
++IL+ D+ S V +LL + T + +G D D ++ + ++P +
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG-DFDFVVTDWNMPGMQ 67
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
G+ +LK I D+EL+ +PV+M++A+ + +++ + G Y+VKP
Sbjct: 68 GIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKP 113
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/117 (25%), Positives = 71/117 (60%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALN-----AEGSDIDLILAEVDL 88
IL+ D++ + + +L + YQ + S+ S +++ + ++ + ++IDLIL ++ +
Sbjct: 3 ILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHNEIDLILLDIMM 62
Query: 89 PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
P GL++ + + ++++ + IP+I ++A ++ + + + L +GA DY+ KP+ ELL
Sbjct: 63 PEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVELL 119
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 38/143 (26%), Positives = 73/143 (51%)
Query: 25 DGFIDRSKVRILLCDNDS------NSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSD 78
D IDR + +LL N S +S LL S SP + + + D
Sbjct: 17 DSLIDRKLIEMLL-KNSSYQVTTVDSGSKALELLGLRDEGDDSSSSPSS--SSPDHQEID 73
Query: 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
++LI+ + +P G +LK + L+ IPV++MS+++ + + +CL GA ++ +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKP 133
Query: 139 LRTNELLNLWTHMWRRRRMLGLA 161
++ ++ L +H+ +R++ L +A
Sbjct: 134 VKLADMKKLKSHLLKRKQQLPMA 156
>UNIPROTKB|Q1D948 [details] [associations]
symbol:MXAN_2606 "Sensor histidine kinase/response
regulator" species:246197 "Myxococcus xanthus DK 1622" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0023014
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 RefSeq:YP_630825.1
ProteinModelPortal:Q1D948 IntAct:Q1D948 STRING:Q1D948
GeneID:4101819 KEGG:mxa:MXAN_2606 PATRIC:22647741 OMA:EMEIEIY
ProtClustDB:CLSK955309 BioCyc:MXAN246197:GIWU-2583-MONOMER
Uniprot:Q1D948
Length = 970
Score = 146 (56.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 36/89 (40%), Positives = 53/89 (59%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
DLIL++V +P+ GL+ML + D + IPVI+++A+ EV+ V+ L GA DYL KP
Sbjct: 642 DLILSDVMMPVMSGLQMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPF 701
Query: 140 RTNELL-NLWTHMWRRRRMLGLAEKNILS 167
NELL + T + R + AE L+
Sbjct: 702 SPNELLARIETQLRLREAAVRAAENERLA 730
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 119 (46.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/113 (25%), Positives = 61/113 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
++IL+ D+ S + +LL + T I LN+ GS ID ++ + ++P
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVLNS-GS-IDFLVTDWNMPGM 58
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
G+ +L+++ D++L+ +PV+M++A+ + +++ + G Y+VKP L
Sbjct: 59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQAL 111
>UNIPROTKB|Q9KLN9 [details] [associations]
symbol:VC_A0704 "Phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR025944 PROSITE:PS00688 HSSP:P10958
PIR:E82426 RefSeq:NP_233091.1 ProteinModelPortal:Q9KLN9
DNASU:2612077 GeneID:2612077 KEGG:vch:VCA0704 PATRIC:20085954
KO:K08476 OMA:DIYMPAM ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 141 (54.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 35/138 (25%), Positives = 72/138 (52%)
Query: 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP 89
+ K +LL D+D + D+ L+ +V P Q + + + + + +L ++ +P
Sbjct: 19 KMKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGV--VLLDMYMP 76
Query: 90 MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149
G+++LK I + +IPVI+++ ++ + V+ +++GA D+L KP+ +LL L
Sbjct: 77 QLHGMELLKQIKAVDD--KIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIK 134
Query: 150 HMWRRRRMLGLAEKNILS 167
RR + +K +LS
Sbjct: 135 QHLELRRSF-IEQKLLLS 151
>TIGR_CMR|VC_A0704 [details] [associations]
symbol:VC_A0704 "phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00448 GO:GO:0005524 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025944
PROSITE:PS00688 HSSP:P10958 PIR:E82426 RefSeq:NP_233091.1
ProteinModelPortal:Q9KLN9 DNASU:2612077 GeneID:2612077
KEGG:vch:VCA0704 PATRIC:20085954 KO:K08476 OMA:DIYMPAM
ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 141 (54.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 35/138 (25%), Positives = 72/138 (52%)
Query: 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP 89
+ K +LL D+D + D+ L+ +V P Q + + + + + +L ++ +P
Sbjct: 19 KMKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGV--VLLDMYMP 76
Query: 90 MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149
G+++LK I + +IPVI+++ ++ + V+ +++GA D+L KP+ +LL L
Sbjct: 77 QLHGMELLKQIKAVDD--KIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIK 134
Query: 150 HMWRRRRMLGLAEKNILS 167
RR + +K +LS
Sbjct: 135 QHLELRRSF-IEQKLLLS 151
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 38/114 (33%), Positives = 63/114 (55%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
++IL+ ++D+ +++ V L K + V + + E + D I+ ++ LP
Sbjct: 1 MKILIIEDDAQTTEIV-KLSFKLGWPDVRLLEASSGESGLAMVETAKPDAIILDIGLPDI 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
G ++L+ I EL PVI+++ ++E S +VK L LGA DYLVKP R ELL
Sbjct: 60 SGYEVLRQIRLFSEL---PVIILTIRNEESDIVKALSLGADDYLVKPFRQMELL 110
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 118 (46.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 29/112 (25%), Positives = 61/112 (54%)
Query: 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEV 86
+D++ +++L+ D+ S V +LL + T+++ AL +G D D ++ +
Sbjct: 1 MDKN-MKVLVVDDFSTMRRIVKNLLRDLGF--TNIQEADDGNTALPMLQGGDFDFVVTDW 57
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
++P +G+ +LK I D L IPV++++A+ + ++ + G Y+VKP
Sbjct: 58 NMPGMQGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKP 109
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 118 (46.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 31/127 (24%), Positives = 63/127 (49%)
Query: 25 DGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84
D IDR V +L + + A L + + + P+Q N ++LI+
Sbjct: 27 DNLIDRKLVERILKISSCKVTTAENGLR---ALEYLGLGDPQQTDSLTNV--MKVNLIIT 81
Query: 85 EVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+ +P G ++LK + L+ +PV+++S+++ + + KCL GA ++ KPL+ +++
Sbjct: 82 DYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLSDV 141
Query: 145 LNLWTHM 151
L H+
Sbjct: 142 EKLKCHL 148
>TAIR|locus:2172545 [details] [associations]
symbol:COL5 "CONSTANS-like 5" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB018118 HOGENOM:HOG000238833 EMBL:AY057632
EMBL:AY080747 EMBL:AY114006 EMBL:AY088432 IPI:IPI00531436
RefSeq:NP_568863.1 UniGene:At.20797 IntAct:Q9FHH8 STRING:Q9FHH8
PRIDE:Q9FHH8 EnsemblPlants:AT5G57660.1 GeneID:835872
KEGG:ath:AT5G57660 TAIR:At5g57660 eggNOG:NOG321782
InParanoid:Q9FHH8 OMA:YSSYTAT PhylomeDB:Q9FHH8
ProtClustDB:CLSN2917767 Genevestigator:Q9FHH8 GermOnline:AT5G57660
Uniprot:Q9FHH8
Length = 355
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 412 SMLPQYNHLPQCVPHVNGMASFPYYPINMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRR 471
S L + + Q V H +S Y + V+ ++ S ++ + + + +DR
Sbjct: 229 SKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSVNRSTITS--STTGGDHQASSMDR- 285
Query: 472 EAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDL 521
EA ++++R+KRK R F+K IRY +RK AE RPR++G+F ++ N D+
Sbjct: 286 EARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDI 335
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 127 (49.8 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 40/154 (25%), Positives = 76/154 (49%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSD----------IDLI 82
+ +L D+ + LL S +VT V S + + L +G + I+LI
Sbjct: 25 LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLI 84
Query: 83 LAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTN 142
+ + +P G ++LK I + IPV++MS+++ + + +CL GA D+L+KP++
Sbjct: 85 MTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLA 144
Query: 143 ELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASD 176
++ L + + A KNI+ + +L A+D
Sbjct: 145 DVKRLRDSLMKAEER---AFKNIM-HKRELEAND 174
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 141 (54.7 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/129 (27%), Positives = 68/129 (52%)
Query: 20 SKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLV-KCSYQVTSVRSPRQVIDALNAEGSD 78
S SS ++ IL+ + D+ ++ V LL+ K Y VT + Q ++ L +
Sbjct: 441 STSSSQQIVNVKNHHILVVE-DTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLE-KNHV 498
Query: 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
DL+L ++ +P+ G+ K I RDK ++ IP+I ++A S C+ G D ++KP
Sbjct: 499 FDLVLMDISMPIMDGIAATK-ILRDKHIE-IPIIALTAHTAGSDKQNCIDAGMNDIVLKP 556
Query: 139 LRTNELLNL 147
+R+ +++ +
Sbjct: 557 IRSKDIMEV 565
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 141 (54.7 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/129 (27%), Positives = 68/129 (52%)
Query: 20 SKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLV-KCSYQVTSVRSPRQVIDALNAEGSD 78
S SS ++ IL+ + D+ ++ V LL+ K Y VT + Q ++ L +
Sbjct: 441 STSSSQQIVNVKNHHILVVE-DTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLE-KNHV 498
Query: 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
DL+L ++ +P+ G+ K I RDK ++ IP+I ++A S C+ G D ++KP
Sbjct: 499 FDLVLMDISMPIMDGIAATK-ILRDKHIE-IPIIALTAHTAGSDKQNCIDAGMNDIVLKP 556
Query: 139 LRTNELLNL 147
+R+ +++ +
Sbjct: 557 IRSKDIMEV 565
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 117 (46.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 27/114 (23%), Positives = 61/114 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
+++L+ D+ S + + L + Y+ V + + L+A +D +++ + ++P
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEM 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GL ++K + D + IP+IM++ + + V+ L+ G +Y+VKP T ++L
Sbjct: 60 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPF-TPQVL 112
>TIGR_CMR|GSU_1102 [details] [associations]
symbol:GSU_1102 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 KO:K07657 RefSeq:NP_952155.1
ProteinModelPortal:Q74E62 GeneID:2688572 KEGG:gsu:GSU1102
PATRIC:22024966 OMA:EARRCKP ProtClustDB:CLSK828177
BioCyc:GSUL243231:GH27-1089-MONOMER Uniprot:Q74E62
Length = 225
Score = 132 (51.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 36/112 (32%), Positives = 62/112 (55%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ +++ + +D V L K Y+ + ++ A DLIL ++ LP G+
Sbjct: 4 ILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLEL--ARSQPPDLILLDLMLPGMMGM 61
Query: 95 KMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELL 145
++ K + + ++ IPVIM++A+ +E+ VV +GA DY+VKP T ELL
Sbjct: 62 EVCKILKKSEKTAHIPVIMLTARGEEIDRVVG-FEVGADDYVVKPFSTRELL 112
>TAIR|locus:2090374 [details] [associations]
symbol:ASML2 "activator of spomin::LUC2" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0010182 "sugar mediated signaling pathway" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0045893 GO:GO:0010182
EMBL:AC023838 EMBL:AP000385 EMBL:AY085594 EMBL:AY885244
IPI:IPI00524505 RefSeq:NP_566437.1 UniGene:At.39532 STRING:Q9LDL9
EnsemblPlants:AT3G12890.1 GeneID:820472 KEGG:ath:AT3G12890
TAIR:At3g12890 eggNOG:NOG274941 HOGENOM:HOG000152986
InParanoid:Q9LDL9 OMA:FARNNDT PhylomeDB:Q9LDL9
ProtClustDB:CLSN2914977 Genevestigator:Q9LDL9 Uniprot:Q9LDL9
Length = 251
Score = 134 (52.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 38/112 (33%), Positives = 61/112 (54%)
Query: 414 LPQYNHLPQCVPHVNGMASF------PYYPINMCLQPGQVSANSWPSYGNS-------PS 460
+P+YN+ Q + N F YY + ++P A S+GNS P+
Sbjct: 69 VPEYNNYYQKMSVNNATHYFHGGDHQEYYGFSPEIKPLFRPATGEQSWGNSEGGIQAEPN 128
Query: 461 TEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVR 512
T+V V+ R+ ++++ +K+ +R F+K I+YV RK LA+RR RVRG+F R
Sbjct: 129 TKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFAR 180
Score = 37 (18.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 16/60 (26%), Positives = 21/60 (35%)
Query: 330 FRSSSSVPDSLSMERSSTPPTDFPQNRNFKDEKFFQPQMPPTRNEPPQATYQYYMSGAMN 389
F SSS PD S S N + E F PQ+ + YY ++N
Sbjct: 23 FHGSSSCPDVDSSLSSYLDDCYGSFNTSSNPESIFVPQVFGISDVSVPEYNNYYQKMSVN 82
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 118 (46.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
+I+LI+ + +P G +LK + + IPV++MS+++ + + +CL GA ++ +K
Sbjct: 71 EINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLK 130
Query: 138 PLRTNELLNLWTHMWRRR 155
P++ +L L HM + +
Sbjct: 131 PVKLADLTKLKPHMMKTK 148
Score = 53 (23.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDID 80
SK +L D+ + LL K S QVT+V S + ++ L D D
Sbjct: 7 SKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDND 56
>UNIPROTKB|P0AFJ5 [details] [associations]
symbol:phoB "PhoB transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0001108
"bacterial-type RNA polymerase holo enzyme binding" evidence=IMP]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=IDA] [GO:0006817 "phosphate ion transport" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:U73857
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
eggNOG:COG0745 HOGENOM:HOG000034819 GO:GO:0001108 EMBL:X04026
PIR:A24256 RefSeq:NP_414933.1 RefSeq:YP_488691.1 PDB:1B00 PDB:1GXP
PDB:1GXQ PDB:1QQI PDB:1ZES PDB:2IYN PDB:2JB9 PDB:2JBA PDB:2Z33
PDB:3T72 PDBsum:1B00 PDBsum:1GXP PDBsum:1GXQ PDBsum:1QQI
PDBsum:1ZES PDBsum:2IYN PDBsum:2JB9 PDBsum:2JBA PDBsum:2Z33
PDBsum:3T72 ProteinModelPortal:P0AFJ5 SMR:P0AFJ5 DIP:DIP-35852N
IntAct:P0AFJ5 MINT:MINT-1313174 EnsemblBacteria:EBESCT00000002796
EnsemblBacteria:EBESCT00000016242 GeneID:12930822 GeneID:945046
KEGG:ecj:Y75_p0387 KEGG:eco:b0399 PATRIC:32115943 EchoBASE:EB0721
EcoGene:EG10728 KO:K07657 OMA:QVLEMGP ProtClustDB:PRK10161
BioCyc:EcoCyc:PHOB-MONOMER BioCyc:ECOL316407:JW0389-MONOMER
EvolutionaryTrace:P0AFJ5 Genevestigator:P0AFJ5 GO:GO:2000142
TIGRFAMs:TIGR02154 Uniprot:P0AFJ5
Length = 229
Score = 132 (51.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 36/129 (27%), Positives = 65/129 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + V +L + +Q ++ LN D LIL + LP G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
++ +K++ R+ + IPV+M++A+ E V+ L GA DY+ KP EL+ + R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 154 RRRMLGLAE 162
R + + E
Sbjct: 122 RISPMAVEE 130
>UNIPROTKB|Q9KU11 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 PIR:H82288 RefSeq:NP_230368.1
ProteinModelPortal:Q9KU11 SMR:Q9KU11 DNASU:2615728 GeneID:2615728
KEGG:vch:VC0719 PATRIC:20080557 ProtClustDB:CLSK874084
Uniprot:Q9KU11
Length = 229
Score = 132 (51.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 33/112 (29%), Positives = 61/112 (54%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + + +L + YQ + L AE DL+L + LP G
Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFP-DLVLLDWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ ++K++ R++ + IPV+M++A+ E V+ L +GA DY+ KP EL+
Sbjct: 62 INLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELV 113
>TIGR_CMR|VC_0719 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154
PIR:H82288 RefSeq:NP_230368.1 ProteinModelPortal:Q9KU11 SMR:Q9KU11
DNASU:2615728 GeneID:2615728 KEGG:vch:VC0719 PATRIC:20080557
ProtClustDB:CLSK874084 Uniprot:Q9KU11
Length = 229
Score = 132 (51.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 33/112 (29%), Positives = 61/112 (54%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + + +L + YQ + L AE DL+L + LP G
Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFP-DLVLLDWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ ++K++ R++ + IPV+M++A+ E V+ L +GA DY+ KP EL+
Sbjct: 62 INLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELV 113
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 142 (55.0 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 41/132 (31%), Positives = 65/132 (49%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
SKVRIL+ D+D + +LL K Y VT V + + +N DL+L +V +P
Sbjct: 158 SKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPH 217
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNELLN--- 146
G +L+ I + IPVI+MS + +++G D+L KP+ ELL
Sbjct: 218 ITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPI-AKELLKKKI 276
Query: 147 --LWTHMWRRRR 156
+ +W+RR+
Sbjct: 277 DTVLQSIWQRRK 288
>TAIR|locus:2047246 [details] [associations]
symbol:COL3 "CONSTANS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010099 "regulation of
photomorphogenesis" evidence=IMP] [GO:0010161 "red light signaling
pathway" evidence=IMP] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC006585 EMBL:AC007266 GO:GO:0010161
GO:GO:0010099 HOGENOM:HOG000238833 EMBL:AY058130 EMBL:AY140103
EMBL:BT002107 EMBL:AY085729 IPI:IPI00519735 PIR:E84640
RefSeq:NP_180052.1 UniGene:At.24362 ProteinModelPortal:Q9SK53
IntAct:Q9SK53 STRING:Q9SK53 EnsemblPlants:AT2G24790.1 GeneID:817016
KEGG:ath:AT2G24790 TAIR:At2g24790 eggNOG:NOG277018
InParanoid:Q9SK53 OMA:TDSREND PhylomeDB:Q9SK53
ProtClustDB:CLSN2912944 Genevestigator:Q9SK53 Uniprot:Q9SK53
Length = 294
Score = 135 (52.6 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 24/59 (40%), Positives = 43/59 (72%)
Query: 457 NSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 515
N+ + V+++ +R EA ++++R+KRK R F+K IRY +RK AE RPR++G+F ++ +
Sbjct: 216 NTETPAVQLSPAER-EARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273
>TIGR_CMR|BA_1312 [details] [associations]
symbol:BA_1312 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
ProteinModelPortal:Q81TG5 DNASU:1086011
EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
OMA:WDEAENG ProtClustDB:CLSK916176
BioCyc:BANT260799:GJAJ-1288-MONOMER
BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
Length = 223
Score = 131 (51.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 35/124 (28%), Positives = 62/124 (50%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
SK R+L+ D++S+ V L Y+ + ++ + L E D ++ ++ +P
Sbjct: 2 SKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKL--ETDHYDFVVLDIMMPE 59
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
GL + K I + + +P+I ++A+ E V LR+GA DY+VKP EL+
Sbjct: 60 MDGLSVCKEIRKTSD---VPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEA 116
Query: 151 MWRR 154
+ RR
Sbjct: 117 VLRR 120
>TIGR_CMR|BA_3229 [details] [associations]
symbol:BA_3229 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
KO:K02483 RefSeq:NP_845535.1 RefSeq:YP_019868.1 RefSeq:YP_029256.1
ProteinModelPortal:Q81NG7 DNASU:1083819
EnsemblBacteria:EBBACT00000008287 EnsemblBacteria:EBBACT00000017508
EnsemblBacteria:EBBACT00000020077 GeneID:1083819 GeneID:2815940
GeneID:2850665 KEGG:ban:BA_3229 KEGG:bar:GBAA_3229 KEGG:bat:BAS2999
OMA:ADNHTTP ProtClustDB:CLSK916969
BioCyc:BANT260799:GJAJ-3061-MONOMER
BioCyc:BANT261594:GJ7F-3168-MONOMER Uniprot:Q81NG7
Length = 224
Score = 131 (51.2 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 35/123 (28%), Positives = 66/123 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ +++ + + + L Y V + + +D +N + DLI+ ++ +P
Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINM--ATYDLIVLDIMIPGIN 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL++L+ + D V++++A+D + VK L LGA DYLVKP +ELL +
Sbjct: 59 GLQVLQKLRADNHTTS--VLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 116
Query: 153 RRR 155
RR+
Sbjct: 117 RRK 119
>TIGR_CMR|BA_0651 [details] [associations]
symbol:BA_0651 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843182.1
RefSeq:YP_017279.1 RefSeq:YP_026895.1 ProteinModelPortal:Q81V49
DNASU:1088070 EnsemblBacteria:EBBACT00000008363
EnsemblBacteria:EBBACT00000015665 EnsemblBacteria:EBBACT00000022532
GeneID:1088070 GeneID:2814886 GeneID:2850289 KEGG:ban:BA_0651
KEGG:bar:GBAA_0651 KEGG:bat:BAS0618 OMA:LWDEAKH
ProtClustDB:CLSK915873 BioCyc:BANT260799:GJAJ-677-MONOMER
BioCyc:BANT261594:GJ7F-704-MONOMER Uniprot:Q81V49
Length = 225
Score = 131 (51.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+ ILL D++ + + L Y RS + I + E + IL ++ +P
Sbjct: 2 IDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHI--ENQNFKFILLDIMMPKMD 59
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
G + K I + +P+IM++A+D+ VV+ L+LGA DY+ KP EL
Sbjct: 60 GWETCKKI---RSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL 108
>TIGR_CMR|CHY_0606 [details] [associations]
symbol:CHY_0606 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_359462.1
ProteinModelPortal:Q3AEH2 STRING:Q3AEH2 GeneID:3728152
KEGG:chy:CHY_0606 PATRIC:21274355
BioCyc:CHYD246194:GJCN-606-MONOMER Uniprot:Q3AEH2
Length = 226
Score = 131 (51.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 39/135 (28%), Positives = 64/135 (47%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ ++D A+ LL +Y ++ E + DL++ +++LP G
Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRE--NFDLVILDLNLPKQDG 60
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+LK I K + +PVI+++A+ E + LG DYL KP EL+ + R
Sbjct: 61 FSVLKEI---KNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLR 117
Query: 154 RRRMLGLAEKNILSY 168
R R G E+ IL Y
Sbjct: 118 RYRK-GRGEEEILKY 131
>TIGR_CMR|BA_4920 [details] [associations]
symbol:BA_4920 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
ProteinModelPortal:Q81KS0 DNASU:1084104
EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
Length = 229
Score = 131 (51.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 40/131 (30%), Positives = 67/131 (51%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RILL +++ + ++ L +QV S + E D DLI+ ++ LP G
Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQE--DYDLIILDIMLPKMNG 60
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL-NLWTHMW 152
++ K I K+ IP++++SA+ E ++ L LGA DY+ KP +EL+ + H+
Sbjct: 61 FEICKQIRAIKD---IPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117
Query: 153 RRRRMLGLAEK 163
R R+LG K
Sbjct: 118 RYERLLGNVSK 128
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 131 (51.2 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 46/152 (30%), Positives = 73/152 (48%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDI-DLILAEVDLPMT 91
VRIL+ D+D + SL S+ SV ++AL+ SD D ++ +V +P
Sbjct: 3 VRILVVDDDRAVRE---SLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRL 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
GL++ + + + +P+++++A+D VS V L GA DYL KP ELL +
Sbjct: 60 DGLEVCRQLRGTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRAL 117
Query: 152 WRRRRMLGLAEKNILSYDFDLVASDPSDANTN 183
RR + AE + + DL DP N
Sbjct: 118 LRRTKPEDAAESMAMRFS-DLTL-DPVTREVN 147
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 134 (52.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 40/153 (26%), Positives = 76/153 (49%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ D D + + L K YQVT + + L + DL + +V+
Sbjct: 42 LRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGD 101
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
+ L I + +L P+I++S D V V K + GAADYL+KP+R +L ++ H+
Sbjct: 102 IFRFLSEIGSEMDL---PIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV 158
Query: 153 RRRRMLGLAEKNILSYDFDLVASDPSDANTNST 185
++ R +++++ + + A + S + +ST
Sbjct: 159 KKMR----ERRSVVTGEAEKAAGEKSSSVGDST 187
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 131 (51.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 33/113 (29%), Positives = 62/113 (54%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
++IL+ D+++ + + L + Y+V + ++ + E D L++ ++ LP
Sbjct: 1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPD--LVILDIMLPGMS 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GL++ K I +++ IP+IM+SA+ E + L LGA DY+VKP EL+
Sbjct: 59 GLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELV 111
>UNIPROTKB|Q9KRK2 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 130 (50.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 38/114 (33%), Positives = 64/114 (56%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDAL-NAEGSDIDLILAEVDLPMT 91
++IL+ ++D + S L + + V + + IDAL A + D+I+ ++ LP
Sbjct: 1 MKILVVEDDVQLGQQILSALEQTGW-VPELA--QDGIDALYRATAEEWDVIVLDLGLPKL 57
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GL +LK I RD+ + PV+++SA+D ++ V+ L GA DYL KP EL+
Sbjct: 58 DGLTVLKGI-RDENINT-PVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELI 109
>TIGR_CMR|VC_1638 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 130 (50.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 38/114 (33%), Positives = 64/114 (56%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDAL-NAEGSDIDLILAEVDLPMT 91
++IL+ ++D + S L + + V + + IDAL A + D+I+ ++ LP
Sbjct: 1 MKILVVEDDVQLGQQILSALEQTGW-VPELA--QDGIDALYRATAEEWDVIVLDLGLPKL 57
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GL +LK I RD+ + PV+++SA+D ++ V+ L GA DYL KP EL+
Sbjct: 58 DGLTVLKGI-RDENINT-PVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELI 109
>TIGR_CMR|GSU_2534 [details] [associations]
symbol:GSU_2534 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR001054 InterPro:IPR001789
Pfam:PF00072 Pfam:PF13188 PROSITE:PS50110 SMART:SM00091
SMART:SM00448 InterPro:IPR001610 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000167205 RefSeq:NP_953580.1 ProteinModelPortal:Q74A56
GeneID:2687798 KEGG:gsu:GSU2534 PATRIC:22027917 OMA:FESVIDW
ProtClustDB:CLSK828874 BioCyc:GSUL243231:GH27-2510-MONOMER
Uniprot:Q74A56
Length = 452
Score = 138 (53.6 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 43/137 (31%), Positives = 73/137 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+RIL +++ + + L++ YQV V + L EG+ DLILA+ D+P+
Sbjct: 7 IRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVL--EGTSYDLILADYDMPVCG 64
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTN--ELLNLWTH 150
G++++ + + + IPVIM++ V V+ L+ GAADY+VK L ELL +
Sbjct: 65 GIEVIATLAA-RGVD-IPVIMVTGNGSEKVAVEALKQGAADYVVKDLEMGYIELLPIVIE 122
Query: 151 MWRRRRMLGLAEKNILS 167
R+ L L EK +++
Sbjct: 123 QVLTRQEL-LREKELMA 138
Score = 42 (19.8 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 437 PINMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRR----EAALIKFRQKRKERCFDKKIR 492
P +CL Q+++ S S P E ++ R E A + F + +E IR
Sbjct: 197 PDYLCLVRDQLASESTGSDA-VPWFEERLTLPGGRAVDVELAAVPFSHEGEE-ALQVIIR 254
Query: 493 YVNRKRLAERR 503
+ K+LA+RR
Sbjct: 255 DITEKKLAKRR 265
>TIGR_CMR|GSU_2041 [details] [associations]
symbol:GSU_2041 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K07714
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_953090.1 ProteinModelPortal:Q74BK0 GeneID:2687998
KEGG:gsu:GSU2041 PATRIC:22026943 OMA:HMLQVML ProtClustDB:CLSK828703
BioCyc:GSUL243231:GH27-1944-MONOMER Uniprot:Q74BK0
Length = 455
Score = 137 (53.3 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 36/126 (28%), Positives = 61/126 (48%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K RIL+ D++ N + ++L K Y+ + A + D IL ++ +P+
Sbjct: 2 KKRILVVDDEENMRHMLCAMLRKQGYEAVEAADGEAAL--AQASAAAYDFILCDIRMPIM 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G+ L+ + EL VIMMSA V + C++ GA DY+ KP + +E+L +
Sbjct: 60 DGVGFLRTFQK-AELPGT-VIMMSAYGTVDAAIACMKEGAYDYVSKPFKNDEILLVLRKA 117
Query: 152 WRRRRM 157
R R+
Sbjct: 118 EERERL 123
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 137 (53.3 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 35/114 (30%), Positives = 58/114 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K RI+L DN+ + ++L Y V + ++ A D DL+++++ +P
Sbjct: 4 KKRIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEAVEEFKA--GDWDLVVSDIKMPGM 61
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GL++L+ I L +PVIM++A V ++ LR GA D + KP ELL
Sbjct: 62 DGLEVLQRIKAKDPL--VPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELL 113
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 130 (50.8 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 38/124 (30%), Positives = 65/124 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ +++ N + V L+ Y V + R+ +D A D DLIL ++ LP G
Sbjct: 4 KILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDT--ALEKDFDLILLDLMLPEMDG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
++ + + +K ++MM+A+D V +V L GA DY+VKP ELL ++R
Sbjct: 62 FEITRRLQAEKTTY---IMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFR 118
Query: 154 RRRM 157
R+ +
Sbjct: 119 RQEI 122
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 114 (45.2 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 25/114 (21%), Positives = 62/114 (54%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
+++L+ D+ S + + L + + V + D L + D+ +++ + ++P
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLT-KNEDVKVLITDWNMPEM 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GL+++K + +K+ + +P+IM++ + + V+ L+ G +Y+VKP T ++L
Sbjct: 60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPF-TPQVL 112
>UNIPROTKB|P0AE88 [details] [associations]
symbol:cpxR "CpxR transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0045892
GO:GO:0045893 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:L19201
eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:M36795 EMBL:X13307
EMBL:L14579 PIR:C65197 RefSeq:NP_418348.1 RefSeq:YP_491538.1
ProteinModelPortal:P0AE88 SMR:P0AE88 DIP:DIP-47991N IntAct:P0AE88
MINT:MINT-1292432 PaxDb:P0AE88 EnsemblBacteria:EBESCT00000002313
EnsemblBacteria:EBESCT00000017066 GeneID:12933651 GeneID:948404
KEGG:ecj:Y75_p3274 KEGG:eco:b3912 PATRIC:32123337 EchoBASE:EB0019
EcoGene:EG10020 KO:K07662 OMA:YQTPVIM ProtClustDB:PRK10955
BioCyc:EcoCyc:CPXR-MONOMER BioCyc:ECOL316407:JW3883-MONOMER
Genevestigator:P0AE88 Uniprot:P0AE88
Length = 232
Score = 130 (50.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 37/112 (33%), Positives = 56/112 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+ILL D+D + + LL + V Q +D L+ IDL+L +V +P G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---DSIDLLLLDVMMPKKNG 59
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ LK + ++ + PVIM++A+ V L LGA DYL KP EL+
Sbjct: 60 IDTLKAL---RQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELV 108
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 136 (52.9 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 38/113 (33%), Positives = 59/113 (52%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+ IL+ D+D + + +LL Y V S RQ ++ + + DL+L +V +
Sbjct: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMD 63
Query: 93 GLKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
G+ LK I K L IPV++M+A V V+ L+ GA DYL+KPL + L
Sbjct: 64 GIATLKEI---KALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNL 113
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 140 (54.3 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 32/118 (27%), Positives = 68/118 (57%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
I++ D+D + A+ + L K + + ++ + ++ L ++IDLIL ++ +P G
Sbjct: 778 IMIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILK-NNTNIDLILMDIMMPNMDGY 836
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
+ +++I + L IP+I ++A+ + KCL GA+DY+ KPL ++L ++ + +W
Sbjct: 837 ETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMS-VW 893
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 130 (50.8 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 34/113 (30%), Positives = 61/113 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+RILL ++D +S ++ +L + V + + ID A+ D DLIL +++LP
Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDL--AKLYDYDLILLDINLPDMN 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
G ++L+ + R ++ P++++S D+ +K GA DYL KP EL+
Sbjct: 59 GHEVLRQL-RMSRIET-PILILSGVDDTESKIKGFGFGADDYLTKPFHREELV 109
>TAIR|locus:2074587 [details] [associations]
symbol:COL2 "CONSTANS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009658
"chloroplast organization" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:AC021640
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
EMBL:AC068900 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009658 GO:GO:0009909 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:L81120 EMBL:L81119 EMBL:AF370149
EMBL:AY059092 EMBL:AY088779 IPI:IPI00518847 RefSeq:NP_186887.1
UniGene:At.10373 IntAct:Q96502 STRING:Q96502
EnsemblPlants:AT3G02380.1 GeneID:821298 KEGG:ath:AT3G02380
TAIR:At3g02380 eggNOG:NOG281690 InParanoid:Q96502 OMA:RVCEACE
PhylomeDB:Q96502 Genevestigator:Q96502 GermOnline:AT3G02380
Uniprot:Q96502
Length = 347
Score = 134 (52.2 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 457 NSPSTEVKMNKVD-RREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 514
+ P T+V REA ++++R+K+K R FDK IRY +RK AE RPR++G+F +++
Sbjct: 263 SGPPTQVVQQLTPMEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRI 321
>UNIPROTKB|P52076 [details] [associations]
symbol:qseB "QseB-Phosphorylated DNA-binding
transcriptional activator" species:83333 "Escherichia coli K-12"
[GO:0032993 "protein-DNA complex" evidence=IDA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=IDA] [GO:0009372
"quorum sensing" evidence=IMP] [GO:0000156 "phosphorelay response
regulator activity" evidence=IEA;IMP] [GO:0010038 "response to
metal ion" evidence=IMP] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=EXP;IEA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:U28377
GO:GO:0010628 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0009372 GO:GO:0010038 eggNOG:COG0745 GO:GO:0001046
GO:GO:0032993 HOGENOM:HOG000034815 PIR:G65089 RefSeq:NP_417497.1
RefSeq:YP_491217.1 ProteinModelPortal:P52076 SMR:P52076
IntAct:P52076 EnsemblBacteria:EBESCT00000002399
EnsemblBacteria:EBESCT00000002400 EnsemblBacteria:EBESCT00000016727
GeneID:12933397 GeneID:945369 KEGG:ecj:Y75_p2951 KEGG:eco:b3025
PATRIC:32121462 EchoBASE:EB2844 EcoGene:EG13026 KO:K07666
OMA:LFFCTSP ProtClustDB:PRK10336 BioCyc:EcoCyc:G7575-MONOMER
BioCyc:ECOL316407:JW2993-MONOMER Genevestigator:P52076
Uniprot:P52076
Length = 219
Score = 128 (50.1 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 40/122 (32%), Positives = 66/122 (54%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+RILL ++D D + + L K + V RQ +AL + + D ++ ++ LP
Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G +L+ R+K QR PV++++A+D ++ V+ LRLGA DYL KP E+ +
Sbjct: 59 GRDILRE-WREKG-QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM 116
Query: 153 RR 154
RR
Sbjct: 117 RR 118
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 129 (50.5 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 33/93 (35%), Positives = 55/93 (59%)
Query: 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118
V +V S + I+ L E S IDL+L ++ +P G ++L YI R++E + I ++M+SA
Sbjct: 30 VQAVNSIKSAIEVL--EESRIDLVLLDIFMPEETGFELLMYI-RNQE-KEIDIMMISAVH 85
Query: 119 EVSVVVKCLRLGAADYLVKPL---RTNELLNLW 148
++ + K L+ G DYL+KP R E L ++
Sbjct: 86 DMGSIKKALQYGVVDYLIKPFTFERFKEALTIY 118
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 135 (52.6 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 37/154 (24%), Positives = 74/154 (48%)
Query: 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP 89
+ + +ILL D++ +A+ LL + V S + + L + D+++ ++ LP
Sbjct: 2 KERTKILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTLTRD--TFDIVITDLFLP 59
Query: 90 MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149
G+ +LK + D L VI+++ VK ++ GA DY+ KPL +EL +
Sbjct: 60 DASGIDILKKVKEDAPLTE--VILITGHASAETAVKAMKEGAFDYITKPLNFDELKIIIG 117
Query: 150 HMWRRRRMLG---LAEKNILS-YDF-DLVASDPS 178
+R++L K + ++F +++ S P+
Sbjct: 118 KAVEKRQLLSENVYLRKQLRDKFEFANIIGSSPA 151
>TIGR_CMR|CPS_4597 [details] [associations]
symbol:CPS_4597 "transcriptional regulatory protein OmpR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0007234 "osmosensory signaling via
phosphorelay pathway" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07659 ProtClustDB:PRK09468
RefSeq:YP_271244.1 ProteinModelPortal:Q47VC8 SMR:Q47VC8
STRING:Q47VC8 GeneID:3519604 KEGG:cps:CPS_4597 PATRIC:21472017
OMA:AANSEQM BioCyc:CPSY167879:GI48-4606-MONOMER Uniprot:Q47VC8
Length = 240
Score = 129 (50.5 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 41/140 (29%), Positives = 72/140 (51%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+D + LV+ + V S + Q+ D L E + L++ ++ LP G
Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQM-DRL-LERENFHLLVLDLMLPGEDG 64
Query: 94 LKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
L + + + ++ IP++M++A+ DEV ++ L LGA DY+ KP ELL +
Sbjct: 65 LSICRRLRQNSN--NIPIVMLTAKGDEVDRIIG-LELGADDYMPKPFNPRELLARIKAVL 121
Query: 153 RRRRMLG----LAEKNILSY 168
RRR E+N++S+
Sbjct: 122 RRRTQEAPGAPALEENVISF 141
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 34/114 (29%), Positives = 67/114 (58%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSY---QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
+++ DND+ +S S +++ SY ++T R+ + ++++N++ +D L+L ++ LP
Sbjct: 4 LIVEDNDAAAS--TISSILRLSYHDAKITVCRTGYEAVESVNSDKAD--LVLLDLGLPDM 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GLK+L I + P+I+++A ++ V+K L GA +Y+ KP R E L
Sbjct: 60 NGLKVLDEI---HPITGAPIIVVTACEDEENVLKALEQGADEYITKPFRHLEFL 110
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 112 (44.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 31/114 (27%), Positives = 60/114 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+IL+ D DS S V S+ ++ Y+V + + LN G I+LI+++V++P
Sbjct: 3 KILVVD-DSASIRHVVSIALRGAGYEVIDACDGKDALSKLN--GDKINLIISDVNMPNMD 59
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
G+ LK + + + PVIM++ + + + GA ++VKP + ++L+
Sbjct: 60 GISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQPPQMLD 113
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 112 (44.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 31/114 (27%), Positives = 60/114 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+IL+ D DS S V S+ ++ Y+V + + LN G I+LI+++V++P
Sbjct: 3 KILVVD-DSASIRHVVSIALRGAGYEVIDACDGKDALSKLN--GDKINLIISDVNMPNMD 59
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
G+ LK + + + PVIM++ + + + GA ++VKP + ++L+
Sbjct: 60 GISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQPPQMLD 113
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 112 (44.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/111 (24%), Positives = 58/111 (52%)
Query: 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD 87
+D++ ++IL+ D+ S + +LL + T + +G D D ++ + +
Sbjct: 1 MDKN-MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQKG-DFDFVVTDWN 58
Query: 88 LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
+P +G+ +LK I D L+ +PV+M++A+ + ++ + G Y+VKP
Sbjct: 59 MPGMQGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKP 109
>TIGR_CMR|SPO_1023 [details] [associations]
symbol:SPO_1023 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:YP_166275.1 ProteinModelPortal:Q5LUN0 GeneID:3195651
KEGG:sil:SPO1023 PATRIC:23375339 OMA:AGVSRFM ProtClustDB:CLSK933415
Uniprot:Q5LUN0
Length = 126
Score = 112 (44.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/112 (24%), Positives = 57/112 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
R+LL +++ N ++A+ LL + +QV + +D + D L++ +V LP G
Sbjct: 4 RVLLIEDEPNIAEAIRFLLSRDGWQVETHADGADAVDIITTALPD--LVILDVMLPGKSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ +L+ + Q +PV+M++A+ + + G + ++ KP E+L
Sbjct: 62 MDILRELREQAATQDLPVLMLTARGQSRDRDMAEKAGVSRFMTKPFSNTEVL 113
>TIGR_CMR|DET_1058 [details] [associations]
symbol:DET_1058 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_181773.1
ProteinModelPortal:Q3Z7M6 STRING:Q3Z7M6 GeneID:3229632
KEGG:det:DET1058 PATRIC:21609161 OMA:ISGWDVC ProtClustDB:CLSK837116
BioCyc:DETH243164:GJNF-1059-MONOMER Uniprot:Q3Z7M6
Length = 227
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/112 (25%), Positives = 64/112 (57%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+++ ++ + + L + ++V+ + ++ + E D LI+ ++ LP G
Sbjct: 4 KILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPD--LIILDLMLPEISG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ + I ++ R+P+IM++A+DE++ + L +GA DY+ KP EL+
Sbjct: 62 WDVCREIRKES---RVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELV 110
>TIGR_CMR|SPO_A0237 [details] [associations]
symbol:SPO_A0237 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR000641 InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR00819 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:CP000032
GenomeReviews:CP000032_GR RefSeq:YP_165066.1
ProteinModelPortal:Q5LKZ2 GeneID:3196880 KEGG:sil:SPOA0237
PATRIC:23381812 Uniprot:Q5LKZ2
Length = 446
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/129 (25%), Positives = 67/129 (51%)
Query: 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDL 88
+R IL+ D+D + ++ LL +QV ++ R + A + + D+IL+++ +
Sbjct: 3 ERRPYSILVIDDDKSMRLSLVDLLEAAGWQVEAIA--RATLVAAKLDDNPPDVILSDIRM 60
Query: 89 PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLW 148
P GL++L + P++++SA ++ + V+ +R GA ++ KP LL++
Sbjct: 61 PGMTGLELLSSLDH---ASAPPLVLISAHGDIPMAVQAMRDGAYSFVEKPYEPRRLLSIL 117
Query: 149 THMWRRRRM 157
TH + RM
Sbjct: 118 THAAEQNRM 126
>TIGR_CMR|CJE_1397 [details] [associations]
symbol:CJE_1397 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_179383.1
ProteinModelPortal:Q5HTK2 STRING:Q5HTK2 GeneID:3231903
KEGG:cjr:CJE1397 PATRIC:20044596 OMA:CREIREK ProtClustDB:CLSK879174
BioCyc:CJEJ195099:GJC0-1424-MONOMER Uniprot:Q5HTK2
Length = 223
Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 37/136 (27%), Positives = 73/136 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+ +L+ ++D + + + L + + ++T+ +P+ ALN D ++ ++ LP
Sbjct: 2 INVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKS---ALNVGIQGYDCLILDLTLPGID 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL-NLWTHM 151
GL++ + I R K IP+I+ SA+ ++S V L++GA DYL KP E+ + + +
Sbjct: 59 GLEVCREI-RQKS--NIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLI 115
Query: 152 WRRRRMLGLAEKNILS 167
R +R+ +NI S
Sbjct: 116 RRTKRVEHTNNENINS 131
>UNIPROTKB|P0AEV1 [details] [associations]
symbol:rssB "regulator of RpoS" species:83333 "Escherichia
coli K-12" [GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0006508
"proteolysis" evidence=EXP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006508 GO:GO:0006351
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 EMBL:X66003 EMBL:M64675 PIR:A36871
RefSeq:NP_415751.1 RefSeq:YP_489503.1 PDB:3EOD PDBsum:3EOD
ProteinModelPortal:P0AEV1 SMR:P0AEV1 IntAct:P0AEV1 PRIDE:P0AEV1
EnsemblBacteria:EBESCT00000002730 EnsemblBacteria:EBESCT00000002731
EnsemblBacteria:EBESCT00000016710 GeneID:12932932 GeneID:945855
KEGG:ecj:Y75_p1208 KEGG:eco:b1235 PATRIC:32117726 EchoBASE:EB2042
EcoGene:EG12121 HOGENOM:HOG000119811 KO:K02485 OMA:MICDLAM
ProtClustDB:PRK10693 BioCyc:EcoCyc:EG12121-MONOMER
BioCyc:ECOL316407:JW1223-MONOMER EvolutionaryTrace:P0AEV1
Genevestigator:P0AEV1 Uniprot:P0AEV1
Length = 337
Score = 126 (49.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 35/115 (30%), Positives = 66/115 (57%)
Query: 69 IDALNAEGSDI-DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127
+DAL G DL++ ++ +P GLK+L++I R++ Q PV+++SA + ++ + K L
Sbjct: 41 VDALELLGGFTPDLMICDIAMPRMNGLKLLEHI-RNRGDQT-PVLVISATENMADIAKAL 98
Query: 128 RLGAADYLVKPLRT-NELLNL-WTHMWRRRRMLGLAEKNILSYDFDLVASDPSDA 180
RLG D L+KP++ N L + + ++ + E+ L D+D + +P+ A
Sbjct: 99 RLGVEDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAA 153
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 287 VDDSAAQNVRMEEKCQPCCQQVVSDTRIH 315
VD+ AA ++ ++ QP QQV+S R++
Sbjct: 147 VDNPAAA-AKLLQELQPPVQQVISHCRVN 174
>TIGR_CMR|SO_4633 [details] [associations]
symbol:SO_4633 "transcriptional regulatory protein OmpR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07659
ProtClustDB:PRK09468 OMA:AANSEQM RefSeq:NP_720149.1 HSSP:P03025
ProteinModelPortal:Q8E8N0 SMR:Q8E8N0 GeneID:1172214
KEGG:son:SO_4633 PATRIC:23528927 Uniprot:Q8E8N0
Length = 241
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 40/123 (32%), Positives = 65/123 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+D + L++ YQV S + Q+ D L E + LI+ ++ LP G
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQM-DRL-LERENFHLIVLDLMLPGEDG 64
Query: 94 LKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
L + + + + IP++M++A+ DEV ++ L LGA DYL KP ELL +
Sbjct: 65 LSICRRLRQQGST--IPIVMLTAKGDEVDRIIG-LELGADDYLPKPFNPRELLARIKAVM 121
Query: 153 RRR 155
RR+
Sbjct: 122 RRQ 124
>TIGR_CMR|CPS_1750 [details] [associations]
symbol:CPS_1750 "transcriptional regulatory protein CpxR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0009636 "response to
toxic substance" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07662 RefSeq:YP_268481.1
ProteinModelPortal:Q484N4 STRING:Q484N4 GeneID:3518457
KEGG:cps:CPS_1750 PATRIC:21466667
BioCyc:CPSY167879:GI48-1820-MONOMER Uniprot:Q484N4
Length = 242
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 35/111 (31%), Positives = 60/111 (54%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
ILL D+D+ S+ + L +++VTS + A DLIL +V +P+ G
Sbjct: 11 ILLIDDDAELSELLTEYLESENFKVTSCLDGASGL--AKAFDDSFDLILLDVMMPILNGF 68
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++LK + + + P++M++A+ + + + L LGA DYL KP + ELL
Sbjct: 69 EVLKALGGN---HKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELL 116
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 36/121 (29%), Positives = 65/121 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ ++D + + YQVT S Q+ +AL E +DIDL+L +++LP GL
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREAL--ELNDIDLVLLDINLPGEDGL 62
Query: 95 KMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNEL-LNLWTHMW 152
+ + + E I +I+++ + D + +V L +GA DY+ KP+ EL + + +W
Sbjct: 63 LLTRELRSQSE---IGIILVTGRTDSIDKIVG-LEMGADDYVTKPVDLRELQVRVKNLLW 118
Query: 153 R 153
R
Sbjct: 119 R 119
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 36/121 (29%), Positives = 65/121 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ ++D + + YQVT S Q+ +AL E +DIDL+L +++LP GL
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREAL--ELNDIDLVLLDINLPGEDGL 62
Query: 95 KMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNEL-LNLWTHMW 152
+ + + E I +I+++ + D + +V L +GA DY+ KP+ EL + + +W
Sbjct: 63 LLTRELRSQSE---IGIILVTGRTDSIDKIVG-LEMGADDYVTKPVDLRELQVRVKNLLW 118
Query: 153 R 153
R
Sbjct: 119 R 119
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 38/116 (32%), Positives = 61/116 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDI--DLILAEVDLPMT 91
RIL+ D++ N + + ++ + R + +DI D++L ++ +P
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF----ADIHPDVVLMDIRMPEM 61
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
G+K LK + R E R PVI+M+A EV V+ LR GA DY++KP +EL NL
Sbjct: 62 DGIKALKEM-RSHET-RTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDEL-NL 114
>TIGR_CMR|GSU_1250 [details] [associations]
symbol:GSU_1250 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 HOGENOM:HOG000058487
RefSeq:NP_952303.1 ProteinModelPortal:Q74DR5 GeneID:2688151
KEGG:gsu:GSU1250 PATRIC:22025271 OMA:LQEQEYY ProtClustDB:CLSK828266
BioCyc:GSUL243231:GH27-1278-MONOMER Uniprot:Q74DR5
Length = 469
Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 33/112 (29%), Positives = 60/112 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
I+L D++ N A +L+ + V +++ RQ++ L G + ++ ++ +P G
Sbjct: 9 IVLVDDEENILKASRLILLGNGFGNVVTLQDSRQLMPLLEQGG--VAAVVLDLFMPHLSG 66
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++L I + IP I+M+A DE V C++ GA DYLVKP+ + L+
Sbjct: 67 TELLPLIV--ERFPHIPAIVMTAVDETETAVTCMKSGAFDYLVKPVESGRLI 116
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 110 (43.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/111 (22%), Positives = 55/111 (49%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTKG 93
+L+ D+ S + L + V + I+ LN G +DLIL+++++P G
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGKSVDLILSDINMPNMDG 63
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
L+ +K + + P++M++ + ++ + + GA+D + KP ++L
Sbjct: 64 LEFIKQARANGH--KAPIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 38/132 (28%), Positives = 77/132 (58%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+ +L+ D++ + + + +L + +T+ ++ + + L+ + S IDLIL ++++P
Sbjct: 5 ISVLVVDDEEMNRELLSVMLDGLATPITA-QNGLEALRVLD-KNSAIDLILLDLEMPELN 62
Query: 93 GLKMLKYITRDKELQRIPVIMMSA-QDEVSVVVKCLRLGAADYLVKPLRTNEL-LNLWTH 150
G L + + IPVI+++A +DEV+ + LRLGA D+L KP T EL L + H
Sbjct: 63 GFATLATLKKHPLWCDIPVIVLTASKDEVT---RTLRLGANDFLAKPYDTEELRLRVMNH 119
Query: 151 MWRRRRMLGLAE 162
+ R ++++ L++
Sbjct: 120 V-RAKKLVDLSQ 130
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/104 (27%), Positives = 60/104 (57%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
I++ D+D +++ +LLV Y V + L+ G ID+++ ++++P G+
Sbjct: 9 IVVIDDDPYVLESLSALLVAYGYIVHPFGRGADAVHRLSCGG--IDIVITDINMPEMTGI 66
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
++L+ I + +PVI+M+ E+SV V+ ++ GA D+++KP
Sbjct: 67 EVLRAIRKSNP--DVPVILMTGYAELSVAVEAIKQGAFDFIIKP 108
>TIGR_CMR|CBU_0367 [details] [associations]
symbol:CBU_0367 "DNA-binding response regulator PhoB"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006796 "phosphate-containing
compound metabolic process" evidence=ISS] [GO:0006817 "phosphate
ion transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 TIGRFAMs:TIGR02154
RefSeq:NP_819407.1 ProteinModelPortal:Q83EF6 PRIDE:Q83EF6
GeneID:1208249 KEGG:cbu:CBU_0367 PATRIC:17929423 OMA:YRFSARY
ProtClustDB:CLSK914019 BioCyc:CBUR227377:GJ7S-368-MONOMER
Uniprot:Q83EF6
Length = 248
Score = 127 (49.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 37/121 (30%), Positives = 67/121 (55%)
Query: 27 FIDRSKVRILLCDNDSNSSDAV-FSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAE 85
FI K+++L+ +++ D V FSL +++ + I L A+ D LIL +
Sbjct: 13 FISVRKIKLLIIEDEIAIRDMVRFSL--PDEFELLDAEDTAKAIKQLAAQIPD--LILLD 68
Query: 86 VDLPMTKGLKMLKYITRDKEL-QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
LP G++ +++I + KE+ Q IP+++++A+ E V+ L GA DY+ KP +EL
Sbjct: 69 WMLPGKSGIEFIEWI-KQKEIWQDIPIVLLTAKAEEENKVRGLMSGADDYITKPFSPDEL 127
Query: 145 L 145
+
Sbjct: 128 I 128
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 36/112 (32%), Positives = 56/112 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+ILL D+D + + LL + V Q ++ L+ IDL+L +V +P G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLD---DSIDLLLLDVMMPKKNG 59
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ LK + ++ + PVIM++A+ V L LGA DYL KP EL+
Sbjct: 60 IDTLKAL---RQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELV 108
>UNIPROTKB|Q9KKK0 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 125 (49.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 43/143 (30%), Positives = 74/143 (51%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+LL ++D+ +++ L + Y V + V+ AL E ++ ++ LP
Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTE--QFTALILDLTLPDMD 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL++L+ I R +PV++++A+D++S VK L GA +Y+ KP ELL +
Sbjct: 59 GLEVLRQIRRAG--YTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLII 116
Query: 153 RRRRMLGLAEKNILSYDFDLVAS 175
RR G AE+ I + DL S
Sbjct: 117 RRSS--GSAEELISVGELDLSLS 137
>TIGR_CMR|VC_A1105 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 125 (49.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 43/143 (30%), Positives = 74/143 (51%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+LL ++D+ +++ L + Y V + V+ AL E ++ ++ LP
Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTE--QFTALILDLTLPDMD 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL++L+ I R +PV++++A+D++S VK L GA +Y+ KP ELL +
Sbjct: 59 GLEVLRQIRRAG--YTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLII 116
Query: 153 RRRRMLGLAEKNILSYDFDLVAS 175
RR G AE+ I + DL S
Sbjct: 117 RRSS--GSAEELISVGELDLSLS 137
>TAIR|locus:2143221 [details] [associations]
symbol:COL1 "CONSTANS-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0009909
EMBL:AL391144 EMBL:Y10555 EMBL:Y10556 EMBL:AY074369 EMBL:BT002363
IPI:IPI00520338 PIR:T51414 RefSeq:NP_197089.1 UniGene:At.24486
UniGene:At.48027 IntAct:O50055 STRING:O50055
EnsemblPlants:AT5G15850.1 GeneID:831442 KEGG:ath:AT5G15850
TAIR:At5g15850 eggNOG:NOG314154 HOGENOM:HOG000238833
InParanoid:O50055 OMA:QSCERAP PhylomeDB:O50055
ProtClustDB:CLSN2685199 Genevestigator:O50055 GermOnline:AT5G15850
Uniprot:O50055
Length = 355
Score = 130 (50.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 513
REA ++++R+K+K R F+K IRY +RK AE+RPR++G+F +K
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKK 328
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 28/115 (24%), Positives = 57/115 (49%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
RIL+ ++ + + + + ++V S + + L E +DLI+ ++++P
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER--LDLIITDINMPDIN 60
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
GL+++ ++ + IP+ ++S + K L LGA +YLVKP L +L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 19/69 (27%), Positives = 41/69 (59%)
Query: 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
IDLIL ++++P+ GLK++ + D + +P+ +++ + + L LGA Y+ KP
Sbjct: 49 IDLILTDINMPVMDGLKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKP 108
Query: 139 LRTNELLNL 147
++ +L++
Sbjct: 109 IQAGRVLSV 117
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 28/115 (24%), Positives = 57/115 (49%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
RIL+ ++ + + + + ++V S + + L E +DLI+ ++++P
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER--LDLIITDINMPDIN 60
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
GL+++ ++ + IP+ ++S + K L LGA +YLVKP L +L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 125 (49.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 70 DALN-AEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128
D L+ A + DLI+ ++ LP G ++L+ + KE +PVI +SA+D V V+ L
Sbjct: 35 DGLHLARTENYDLIILDIMLPGRDGWEVLEELR--KEGSEVPVIYLSARDAVHDRVRGLE 92
Query: 129 LGAADYLVKPLRTNELL 145
LGA DYLVKP +ELL
Sbjct: 93 LGADDYLVKPFAFSELL 109
>TAIR|locus:2143206 [details] [associations]
symbol:CO "CONSTANS" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IGI] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010018 "far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009908 GO:GO:0009909 EMBL:AL391144 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:X94937 EMBL:BT001926 EMBL:AY086574
IPI:IPI00535908 IPI:IPI00657421 PIR:A56133 RefSeq:NP_001031887.1
RefSeq:NP_197088.1 UniGene:At.18 IntAct:Q39057 MINT:MINT-6608985
STRING:Q39057 EnsemblPlants:AT5G15840.1 GeneID:831441
KEGG:ath:AT5G15840 TAIR:At5g15840 eggNOG:NOG306777
InParanoid:Q39057 KO:K12135 OMA:CHADSAY PhylomeDB:Q39057
Genevestigator:Q39057 GO:GO:0010018 Uniprot:Q39057
Length = 373
Score = 130 (50.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 453 PSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVR 512
P + T +++ +DR EA ++++R+KRK R F+K IRY +RK AE RPRV G+F +
Sbjct: 289 PDPASQMITVTQLSPMDR-EARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAK 347
Query: 513 K 513
+
Sbjct: 348 R 348
>TAIR|locus:2145698 [details] [associations]
symbol:AT5G14370 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002688 EMBL:AY050892 EMBL:AY091296
IPI:IPI00522642 RefSeq:NP_568300.1 UniGene:At.5173
EnsemblPlants:AT5G14370.1 GeneID:831288 KEGG:ath:AT5G14370
TAIR:At5g14370 HOGENOM:HOG000151170 InParanoid:Q949T9 OMA:WVSYSEV
PhylomeDB:Q949T9 ProtClustDB:CLSN2689669 ArrayExpress:Q949T9
Genevestigator:Q949T9 Uniprot:Q949T9
Length = 339
Score = 129 (50.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 23/43 (53%), Positives = 36/43 (83%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 513
REA+L+++++KR+ R F K+IRY RK AE+RPRV+G+FV++
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336
>TIGR_CMR|SPO_0251 [details] [associations]
symbol:SPO_0251 "DNA-binding response regulator PetR"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 KO:K07659 RefSeq:YP_165515.1
ProteinModelPortal:Q5LX38 GeneID:3196152 KEGG:sil:SPO0251
PATRIC:23373753 OMA:DRGQAQE ProtClustDB:CLSK933195 Uniprot:Q5LX38
Length = 233
Score = 125 (49.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/111 (27%), Positives = 56/111 (50%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ D+D D + L++ + VT+ R L+ G D DLI+ +V +P G+
Sbjct: 8 LLIVDDDERIRDLLKKFLMRHGFLVTAARDAEHARRILS--GLDFDLIVMDVMMPGEDGV 65
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ + + ++ P+++++A+ E + L GA DYL KP ELL
Sbjct: 66 SLTRAL---RQTLSTPILLLTARGETEHRIAGLEAGADDYLAKPFEPRELL 113
>TIGR_CMR|SPO_A0357 [details] [associations]
symbol:SPO_A0357 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 EMBL:CP000032
GenomeReviews:CP000032_GR KO:K02483 RefSeq:YP_165184.1
ProteinModelPortal:Q5LKM4 GeneID:3196715 KEGG:sil:SPOA0357
PATRIC:23382060 OMA:ERARMVL ProtClustDB:CLSK935236 Uniprot:Q5LKM4
Length = 242
Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 36/111 (32%), Positives = 58/111 (52%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ D+ S AV L K + T + R++ DA+ A +IDL++ +V +P GL
Sbjct: 8 ILVVDDHSEIRTAVCRYLEKSGLRTTMAKDAREM-DAVLAT-ENIDLVVLDVMMPGEDGL 65
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
K +++ + IP+++++A E + L GA DYL KP ELL
Sbjct: 66 SACKRLSQSGD---IPILLLTALSEDMDRIVGLETGADDYLAKPFNPRELL 113
>TAIR|locus:2028421 [details] [associations]
symbol:BBX17 "B-box domain protein 17" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 IPI:IPI00544498
RefSeq:NP_175339.2 UniGene:At.38297 EnsemblPlants:AT1G49130.1
GeneID:841336 KEGG:ath:AT1G49130 OMA:VATKHER Uniprot:F4I1N0
Length = 326
Score = 128 (50.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 459 PSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 513
P E K + +R EA + ++R KRK R F+KKIRY RK A++RPR++G+FVR+
Sbjct: 267 PGIEEKRVRSER-EARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 320
>UNIPROTKB|Q9FDX8 [details] [associations]
symbol:HD1 "Zinc finger protein HD1" species:39947 "Oryza
sativa Japonica Group" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0045892 GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 EMBL:AP008212 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0009908 GO:GO:0009909 GO:GO:0010229
eggNOG:NOG281690 OMA:RVCEACE GO:GO:0048579 GO:GO:0048576
EMBL:AB041837 EMBL:AB041838 EMBL:AB375859 EMBL:AP003044
EMBL:AP005813 RefSeq:NP_001057378.1 UniGene:Os.1189 STRING:Q9FDX8
EnsemblPlants:LOC_Os06g16370.1 GeneID:4340746 KEGG:osa:4340746
Gramene:Q9FDX8 ProtClustDB:CLSN2696123 GO:GO:0048571 GO:GO:0048572
Uniprot:Q9FDX8
Length = 395
Score = 129 (50.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 31/87 (35%), Positives = 54/87 (62%)
Query: 437 PINMCLQP-GQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVN 495
P + L P G ++ S PS S + + +DR EA ++++R+K+K R F+K IRY
Sbjct: 296 PNSRILTPAGAINLFSGPSLQMS----LHFSSMDR-EARVLRYREKKKARKFEKTIRYET 350
Query: 496 RKRLAERRPRVRGQFVRKVNGVNVDLN 522
RK AE RPR++G+F ++ + V ++++
Sbjct: 351 RKAYAEARPRIKGRFAKR-SDVQIEVD 376
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 125 (49.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV 123
+P A A ID++L + +P G +LK I IPV++MS+++E +
Sbjct: 69 TPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSENEPQRI 128
Query: 124 VKCLRLGAADYLVKPLRTNELLNL 147
+CL GA D+++KPL+ N++ L
Sbjct: 129 SRCLTAGAEDFILKPLKMNDVQRL 152
>UNIPROTKB|Q9FE92 [details] [associations]
symbol:Hd1 "Heading day 1" species:4530 "Oryza sativa"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0009909 GO:GO:0010229 GO:GO:0048571 GO:GO:0048572
EMBL:JN402207 EMBL:AB041840 EMBL:AB041842 Gramene:Q9FE92
Genevestigator:Q9FE92 Uniprot:Q9FE92
Length = 407
Score = 129 (50.5 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 31/87 (35%), Positives = 54/87 (62%)
Query: 437 PINMCLQP-GQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVN 495
P + L P G ++ S PS S + + +DR EA ++++R+K+K R F+K IRY
Sbjct: 308 PNSRILTPAGAINLFSGPSLQMS----LHFSSMDR-EARVLRYREKKKARKFEKTIRYET 362
Query: 496 RKRLAERRPRVRGQFVRKVNGVNVDLN 522
RK AE RPR++G+F ++ + V ++++
Sbjct: 363 RKAYAEARPRIKGRFAKR-SDVQIEVD 388
>TIGR_CMR|CPS_3950 [details] [associations]
symbol:CPS_3950 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 Pfam:PF00563 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 Gene3D:3.20.20.450
InterPro:IPR001633 SMART:SM00052 SUPFAM:SSF141868 PROSITE:PS50883
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000136246 RefSeq:YP_270608.1 ProteinModelPortal:Q47X62
STRING:Q47X62 GeneID:3523052 KEGG:cps:CPS_3950 PATRIC:21470787
OMA:NITEVES ProtClustDB:CLSK768238
BioCyc:CPSY167879:GI48-3963-MONOMER Uniprot:Q47X62
Length = 566
Score = 131 (51.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 36/108 (33%), Positives = 55/108 (50%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKC--SYQVTSVRSPRQVIDAL-NAEGSDIDLILAEVDLP 89
+++L+ D+D + + L + S +T V S V DAL N + S D IL + +LP
Sbjct: 4 MKVLIVDDDIVDRELIKRTLKRSDISCNITEVES---VDDALKNLQDSSFDAILLDYNLP 60
Query: 90 MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
G+++L I D VIMMS E + + C+ GA D+LVK
Sbjct: 61 QRNGIELLLEIKGDPNRHDTAVIMMSTSKEDELALNCINAGAQDFLVK 108
>TIGR_CMR|SPO_0187 [details] [associations]
symbol:SPO_0187 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
RefSeq:YP_165457.1 ProteinModelPortal:Q5LWY3 GeneID:3193850
KEGG:sil:SPO0187 PATRIC:23373621 KO:K07774 OMA:RDHRSET
ProtClustDB:CLSK933179 Uniprot:Q5LWY3
Length = 221
Score = 123 (48.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 38/95 (40%), Positives = 50/95 (52%)
Query: 77 SDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136
+D DLIL ++ LP G LK + RD + PVI+++A+ EVS V L LGA DYL
Sbjct: 43 TDYDLILLDIMLPDGDGRSFLK-MQRDHRSET-PVIVLTARSEVSDRVGVLDLGADDYLT 100
Query: 137 KPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFD 171
KP +EL + RRR +K I FD
Sbjct: 101 KPFDFSELEARCRAVLRRRGGRSSNQKRIGGLTFD 135
>TAIR|locus:2195518 [details] [associations]
symbol:AT1G63820 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002684 GenomeReviews:CT485782_GR
HOGENOM:HOG000090374 ProtClustDB:CLSN2681537 EMBL:AK176159
IPI:IPI00542615 RefSeq:NP_176567.2 UniGene:At.50956
EnsemblPlants:AT1G63820.1 GeneID:842685 KEGG:ath:AT1G63820
TAIR:At1g63820 eggNOG:NOG240378 InParanoid:Q67ZF8 OMA:TQRNFTK
PhylomeDB:Q67ZF8 ArrayExpress:Q67ZF8 Genevestigator:Q67ZF8
Uniprot:Q67ZF8
Length = 293
Score = 126 (49.4 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 50/198 (25%), Positives = 80/198 (40%)
Query: 315 HENGEAWENYSQGEDFRSSSSVPDSLSMERSSTPPTDFPQNRNFKDEKFFQPQMPPTRNE 374
H++ +E+++ SSS P S + T FP F++ + + N
Sbjct: 50 HQSLSFFESFTPTTHHILSSSPPISQLQTLTLTHTNSFPNFSGFENFDTVKTEQL-LFNS 108
Query: 375 PPQATYQYYMSGAMNQVMLPSSSAQMYQKNLHELQNHSMLPQYNHLPQCVPHVNGMASFP 434
P A + S NQ +L S + ++ + + L G S+
Sbjct: 109 PFDAPFMEDSSNFQNQNLLNSPEDSFFSDHMRRVYSTGDLQNLGR------DFTGQRSYS 162
Query: 435 YYPINMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYV 494
P+ P V + G+ S V + R+ + K+R KR +R F K I+Y
Sbjct: 163 S-PLAAESSPTTVFS------GDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKYA 215
Query: 495 NRKRLAERRPRVRGQFVR 512
RK LA+ RPRVRG+F R
Sbjct: 216 CRKTLADNRPRVRGRFAR 233
>TAIR|locus:2175564 [details] [associations]
symbol:CIA2 "chloroplast import apparatus 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEP] [GO:0045036 "protein targeting to chloroplast"
evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR010402
Pfam:PF06203 PROSITE:PS51017 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB023042 EMBL:AF359387
EMBL:AF372929 EMBL:AY078036 EMBL:AK316813 EMBL:AK221521
IPI:IPI00517190 IPI:IPI00544089 IPI:IPI00656805
RefSeq:NP_001032087.1 RefSeq:NP_568852.2 RefSeq:NP_851201.1
UniGene:At.9681 IntAct:Q9LU68 STRING:Q9LU68 PaxDb:Q9LU68
PRIDE:Q9LU68 EnsemblPlants:AT5G57180.2 GeneID:835824
KEGG:ath:AT5G57180 GeneFarm:2245 TAIR:At5g57180 eggNOG:NOG245310
HOGENOM:HOG000238782 InParanoid:Q9LU68 OMA:YLRSLMV PhylomeDB:Q9LU68
ProtClustDB:CLSN2680548 Genevestigator:Q9LU68 GO:GO:0045036
Uniprot:Q9LU68
Length = 435
Score = 129 (50.5 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 515
REA+++++++KR+ R F KKIRY RK A++RPR++G+FVR+ N
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRPN 427
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 129 (50.5 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 33/143 (23%), Positives = 70/143 (48%)
Query: 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP 89
+ +++L+ D++ N D + L + Y+V + + + L E L + ++ +P
Sbjct: 2 KETIKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKEE--TFHLAIFDIKMP 59
Query: 90 MTKGLKMLKYITRDKEL-QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLW 148
G+++L+ R ++L + + VI+++ + + ++LGA DYL KP EL
Sbjct: 60 GIDGIELLQ---RARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITL 116
Query: 149 THMWRRRRML--GLAEKNILSYD 169
+ +R++L L K +L D
Sbjct: 117 QKAYEKRQLLEENLGMKEVLLRD 139
>TIGR_CMR|GSU_0776 [details] [associations]
symbol:GSU_0776 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951833.1 ProteinModelPortal:Q74F33 GeneID:2685232
KEGG:gsu:GSU0776 PATRIC:22024313 OMA:KELPIWR ProtClustDB:CLSK828021
BioCyc:GSUL243231:GH27-778-MONOMER Uniprot:Q74F33
Length = 465
Score = 129 (50.5 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 31/118 (26%), Positives = 63/118 (53%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
K +IL+CD++ + + ++V + ++ + A D D++L +V +P
Sbjct: 3 KAKILICDDEEGIRRYLQKMFQAKEFEVETFADGTSLLARIEAGTDGDADILLQDVRMPD 62
Query: 91 TKGLKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
G+++LK R K+L+ +PV++M+A + V ++LGA DY+ KP ++L +
Sbjct: 63 MDGIEVLK---RVKKLRPSLPVVVMTAFGTIDSAVDAIKLGAYDYVTKPFPREKILGV 117
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 123 (48.4 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/99 (27%), Positives = 53/99 (53%)
Query: 58 QVTSVRSPRQVIDA-LNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116
Q T P A +N + +++LI+ + +P G +LK + + IPV++MS+
Sbjct: 52 QSTDSNDPNAFSKAPVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSS 111
Query: 117 QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155
++ + + +CL GA ++ +KP+R +L L HM + +
Sbjct: 112 ENVPARISRCLEEGAEEFFLKPVRLADLNKLKPHMMKTK 150
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 106 (42.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 24/114 (21%), Positives = 56/114 (49%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL D+ + ++ L++ +QV + + +D L E DLI+ ++++P G
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKE--KFDLIITDLNMPEMDG 60
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+ ++ + + PVI+++ + + + + R GA ++ KP +LL +
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGV 114
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 106 (42.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 24/114 (21%), Positives = 56/114 (49%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL D+ + ++ L++ +QV + + +D L E DLI+ ++++P G
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKE--KFDLIITDLNMPEMDG 60
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+ ++ + + PVI+++ + + + + R GA ++ KP +LL +
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGV 114
>TIGR_CMR|GSU_2287 [details] [associations]
symbol:GSU_2287 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953336.1 ProteinModelPortal:Q74AR5 GeneID:2686930
KEGG:gsu:GSU2287 PATRIC:22027433 OMA:HERDMEA
BioCyc:GSUL243231:GH27-2270-MONOMER Uniprot:Q74AR5
Length = 136
Score = 106 (42.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 82 ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL-- 139
+L ++ LP G+ +L+ + + +E + IPV+++++ D + C +LGAA +L KPL
Sbjct: 60 VLLDLKLPRVDGVDVLREMRKREETRDIPVVVLTSSDHERDMEACGKLGAAHFLQKPLDA 119
Query: 140 -RTNELLN 146
R +E+LN
Sbjct: 120 GRMSEVLN 127
>UNIPROTKB|Q8EB45 [details] [associations]
symbol:SO_3689 "Two component signal transduction system
Sigma54-dependent response regulator Fis family" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006995 "cellular response
to nitrogen starvation" evidence=ISS] [GO:0035556 "intracellular
signal transduction" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006995
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 OMA:FERLGSH RefSeq:NP_719230.1
ProteinModelPortal:Q8EB45 GeneID:1171345 KEGG:son:SO_3689
PATRIC:23527060 ProtClustDB:CLSK907292 Uniprot:Q8EB45
Length = 475
Score = 129 (50.5 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 35/121 (28%), Positives = 68/121 (56%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--TK 92
IL+ D++ A+ +L YQV + +P ++ + A DIDL++ +++ T
Sbjct: 4 ILIVDDNHAICQALGLMLEINGYQVLTCHTPDDALNLIAAH--DIDLVIQDMNFTRDTTS 61
Query: 93 GL--KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G + L Y R+++ +P+I+M+A ++ V+ +++GAADY+ KP +LLN T+
Sbjct: 62 GEEGRQLFYALRERQPD-LPIILMTAWTQLETAVELVKVGAADYMGKPWDDAKLLNSITN 120
Query: 151 M 151
+
Sbjct: 121 L 121
>TIGR_CMR|SO_3689 [details] [associations]
symbol:SO_3689 "sigma-54 dependent nitrogen response
regulator" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006995
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 OMA:FERLGSH RefSeq:NP_719230.1
ProteinModelPortal:Q8EB45 GeneID:1171345 KEGG:son:SO_3689
PATRIC:23527060 ProtClustDB:CLSK907292 Uniprot:Q8EB45
Length = 475
Score = 129 (50.5 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 35/121 (28%), Positives = 68/121 (56%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--TK 92
IL+ D++ A+ +L YQV + +P ++ + A DIDL++ +++ T
Sbjct: 4 ILIVDDNHAICQALGLMLEINGYQVLTCHTPDDALNLIAAH--DIDLVIQDMNFTRDTTS 61
Query: 93 GL--KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G + L Y R+++ +P+I+M+A ++ V+ +++GAADY+ KP +LLN T+
Sbjct: 62 GEEGRQLFYALRERQPD-LPIILMTAWTQLETAVELVKVGAADYMGKPWDDAKLLNSITN 120
Query: 151 M 151
+
Sbjct: 121 L 121
>TIGR_CMR|CPS_4166 [details] [associations]
symbol:CPS_4166 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003594 Pfam:PF00072 Pfam:PF02518 PROSITE:PS50110
SMART:SM00387 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
Gene3D:3.30.565.10 SUPFAM:SSF55874 RefSeq:YP_270818.1
ProteinModelPortal:Q47WK4 STRING:Q47WK4 GeneID:3522071
KEGG:cps:CPS_4166 PATRIC:21471193
BioCyc:CPSY167879:GI48-4176-MONOMER Uniprot:Q47WK4
Length = 508
Score = 129 (50.5 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDI--DLILAEVDLP 89
++ +L+ D D + A+ L+K Y+V + + + A+ SD+ DLIL ++ +P
Sbjct: 154 ELNVLVVD-DIADNIAIIKELIKDKYRVKAALNAKT---AMKICLSDLPPDLILLDIMMP 209
Query: 90 MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
GL + K + + Q I VI ++A E VVK L LGA DY+ KP+
Sbjct: 210 EVDGLTLCKQLKENPLTQNIVVIFLTALSETEDVVKGLSLGAVDYITKPI 259
>TIGR_CMR|SO_4428 [details] [associations]
symbol:SO_4428 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
HSSP:P06143 RefSeq:NP_719949.1 ProteinModelPortal:Q8E961
GeneID:1172025 KEGG:son:SO_4428 PATRIC:23528509 OMA:PNQVISR
ProtClustDB:CLSK907640 Uniprot:Q8E961
Length = 225
Score = 122 (48.0 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 33/113 (29%), Positives = 57/113 (50%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
++ILL ++D+ + D + ++ + + + Q + L A DL++ + LP
Sbjct: 1 MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGL--LQATSGQYDLLILDRMLPQLD 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GLK+L + + PV+++SA V VK LR G DY+ KP +ELL
Sbjct: 59 GLKLLAALRATGN--QTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELL 109
>TAIR|locus:2177911 [details] [associations]
symbol:AT5G41380 "AT5G41380" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AY800647 EMBL:AY924846
IPI:IPI00519705 RefSeq:NP_198954.2 UniGene:At.51252
EnsemblPlants:AT5G41380.1 GeneID:834140 KEGG:ath:AT5G41380
TAIR:At5g41380 HOGENOM:HOG000090374 InParanoid:Q5Q0A4 OMA:VVEIPNI
PhylomeDB:Q5Q0A4 ProtClustDB:CLSN2681537 Genevestigator:Q5Q0A4
Uniprot:Q5Q0A4
Length = 307
Score = 125 (49.1 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 55/202 (27%), Positives = 87/202 (43%)
Query: 333 SSSVPDSL--SMERSSTPPTD-FPQNRNF------KDEKFFQPQMPPTRNEPPQATYQYY 383
SSS P L ++ S PT +P +F K EKFF +T +
Sbjct: 65 SSSPPSDLLGTLSLSQHIPTGLYPNFSDFQISDAVKTEKFFDGHNQAATMARSYSTIEN- 123
Query: 384 MSGAMNQVMLPSSSAQMYQKNLH---ELQNHSMLPQYNHL--PQCVPHVNGMAS-FPYYP 437
SG Q S+S + Q + + + S L YN+L P+ + M +
Sbjct: 124 -SGRYMQRSFSSNSVEGKQTQVPFNIPMMDSSNL-SYNNLSSPENAFFSSQMRRVYSTGD 181
Query: 438 INMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRK 497
+ ++ + S NS + + +V + R+ + K+R KR +R F K I+Y RK
Sbjct: 182 LQNNMEMQRSSENSTMPFSEEQNFKVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRK 241
Query: 498 RLAERRPRVRGQFVRKVNGVNV 519
LA+ RPR+RG+F R V +
Sbjct: 242 TLADSRPRIRGRFARNDEVVEI 263
>TIGR_CMR|CPS_3305 [details] [associations]
symbol:CPS_3305 "DNA-binding response regulator BaeR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0042493 "response to
drug" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K07664 RefSeq:YP_269981.1
ProteinModelPortal:Q47YY9 STRING:Q47YY9 GeneID:3519397
KEGG:cps:CPS_3305 PATRIC:21469577 OMA:VENTHGS
BioCyc:CPSY167879:GI48-3334-MONOMER Uniprot:Q47YY9
Length = 232
Score = 122 (48.0 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 33/112 (29%), Positives = 59/112 (52%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ +++ + + L K YQ T + +V+ + + DLIL ++ LP GL
Sbjct: 4 ILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTV--KNQHFDLILLDLMLPGKDGL 61
Query: 95 KMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ + I +E I +IM++A+ DE+ ++ L LGA DY+ KP E++
Sbjct: 62 TICREI---QEFSNIAIIMVTARVDEIDRLLG-LELGADDYICKPFSPREVV 109
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 105 (42.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 25/112 (22%), Positives = 56/112 (50%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
++IL+ D+ S + +LL + TS + G+ D ++ + ++P
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQSGA-FDFLVTDWNMPGMT 59
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
G+ +L+ + D+ L+ +PV+M++A+ + +++ + G Y+VKP L
Sbjct: 60 GIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQAL 111
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 105 (42.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 24/112 (21%), Positives = 54/112 (48%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++L D+ + V L Y+V + R+ + A+ + D+I+++V++P+ G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL--AKAQKARFDVIISDVNMPVMTG 66
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ +K + + + P++M++ + + +GA +LVKP LL
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLL 118
>UNIPROTKB|Q9WYT9 [details] [associations]
symbol:TM_0468 "Response regulator" species:243274
"Thermotoga maritima MSB8" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
Length = 122
Score = 105 (42.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 31/118 (26%), Positives = 60/118 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++LL D+ + V L K Y+V + + ++ L+ E + DLI+ ++ +P+ G
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-EFTP-DLIVLDIMMPVMDG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
+LK + +E +RIPVI+++A+ L LGA + KP ++ + H+
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 105 (42.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 28/112 (25%), Positives = 58/112 (51%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ + + K YQ + Q +D + + D L++ ++ +P G
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPD--LVVLDMKIPGMDG 61
Query: 94 LKMLKYITRDKEL-QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++LK++ KE+ + I VI+M+A E+ ++ + LGA + KP +E+
Sbjct: 62 IEILKHV---KEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEI 110
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 105 (42.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 24/112 (21%), Positives = 54/112 (48%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++L D+ + V L Y+V + R+ + A+ + D+I+++V++P+ G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL--AKAQKARFDVIISDVNMPVMTG 66
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ +K + + + P++M++ + + +GA +LVKP LL
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLL 118
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 118 (46.6 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 21/73 (28%), Positives = 45/73 (61%)
Query: 75 EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134
E ++LI+ + +P G ++LK I + +PV++MS+++ + + +CL GA D+
Sbjct: 76 EDLKVNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDF 135
Query: 135 LVKPLRTNELLNL 147
L+KP++ +++ L
Sbjct: 136 LLKPVKLSDVKRL 148
>TIGR_CMR|GSU_1265 [details] [associations]
symbol:GSU_1265 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
HOGENOM:HOG000217841 RefSeq:NP_952318.1 ProteinModelPortal:Q74DQ0
GeneID:2685795 KEGG:gsu:GSU1265 PATRIC:22025301 OMA:SHITHEF
ProtClustDB:CLSK743116 BioCyc:GSUL243231:GH27-1218-MONOMER
Uniprot:Q74DQ0
Length = 445
Score = 127 (49.8 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 38/145 (26%), Positives = 74/145 (51%)
Query: 18 GNSKSSGDGFIDRSK----VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALN 73
G+ ++ DG S+ +R+L+ ++ + + + L S+QV S + ++ +D
Sbjct: 304 GDRQAPADGQEKESESVAPLRVLVAEDAEDIRLLIAAFLRGASHQVCSAGNGQEALDMFM 363
Query: 74 AEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR----IPVIMMSAQDEVSVVVKCLRL 129
AE D DL+L ++ +P+ G + + R+ E QR +PV+ ++A E S +K +
Sbjct: 364 AE--DFDLVLMDIQMPVMDGYTATRAL-REWERQRGRTPVPVVALTACAEKSDSLKTIEA 420
Query: 130 GAADYLVKPLRTNELLNLWTHMWRR 154
G +L KP+R + LL + R+
Sbjct: 421 GCTSHLSKPIRKDTLLRTVAELARQ 445
>TAIR|locus:2017582 [details] [associations]
symbol:ZML2 "ZIM-LIKE 2" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000679 InterPro:IPR010402
InterPro:IPR013088 Pfam:PF00320 Pfam:PF06203 PROSITE:PS00344
PROSITE:PS50114 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 EMBL:AC025294
GO:GO:0043565 GO:GO:0008270 Gene3D:3.30.50.10 GO:GO:0003700
GO:GO:0006351 EMBL:AC024261 eggNOG:NOG303027 HOGENOM:HOG000238783
ProtClustDB:CLSN2688624 InterPro:IPR010399 Pfam:PF06200
PROSITE:PS51320 EMBL:AB119061 EMBL:AY045906 EMBL:AY150395
IPI:IPI00526986 PIR:F96554 RefSeq:NP_564593.1 RefSeq:NP_974002.1
UniGene:At.26180 UniGene:At.37784 ProteinModelPortal:Q8H1G0
SMR:Q8H1G0 IntAct:Q8H1G0 PaxDb:Q8H1G0 EnsemblPlants:AT1G51600.1
EnsemblPlants:AT1G51600.2 GeneID:841585 KEGG:ath:AT1G51600
GeneFarm:3915 TAIR:At1g51600 InParanoid:Q8H1G0 OMA:NNDEAAS
PhylomeDB:Q8H1G0 Genevestigator:Q8H1G0 GermOnline:AT1G51600
Uniprot:Q8H1G0
Length = 302
Score = 124 (48.7 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 444 PGQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERR 503
PG S + + P T + + + +R A+L++FR+KRK R FDKKIRY RK +A R
Sbjct: 121 PGLGSPHQNNRVSSLPGTPQRFS-IPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRM 179
Query: 504 PRVRGQF 510
R +GQF
Sbjct: 180 QRNKGQF 186
>TIGR_CMR|CPS_1426 [details] [associations]
symbol:CPS_1426 "transcriptional regulatory protein RstA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_268169.1
ProteinModelPortal:Q485U6 STRING:Q485U6 GeneID:3518469
KEGG:cps:CPS_1426 PATRIC:21466063 ProtClustDB:CLSK749833
BioCyc:CPSY167879:GI48-1507-MONOMER Uniprot:Q485U6
Length = 248
Score = 122 (48.0 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 37/135 (27%), Positives = 68/135 (50%)
Query: 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP 89
+++ ILL ++D + ++ + L+ ++VT+ +D + + DI +L + LP
Sbjct: 4 QARPHILLVEDDIDLAEWIADYLIGREFKVTTCHRGDDAVDLIQSLNPDI--VLLDGMLP 61
Query: 90 MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149
GL + K + + P+IM++A+DE V L +GA DY+ KP+R LL
Sbjct: 62 GMDGLDVCKTVRATFDN---PIIMITARDEEIDEVLGLEMGADDYITKPVRARVLLARIR 118
Query: 150 HMWRRRRMLGLAEKN 164
+ RR A+K+
Sbjct: 119 GLLRREDKSRTADKS 133
>TAIR|locus:2031581 [details] [associations]
symbol:BBX16 "B-box domain protein 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0009641 "shade avoidance" evidence=IMP] [GO:0010223 "secondary
shoot formation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016662 HOGENOM:HOG000240360 EMBL:BT015740
EMBL:BT020183 IPI:IPI00516267 PIR:C96766 RefSeq:NP_177528.1
UniGene:At.34943 IntAct:Q9C9A9 STRING:Q9C9A9
EnsemblPlants:AT1G73870.1 GeneID:843723 KEGG:ath:AT1G73870
TAIR:At1g73870 eggNOG:NOG320376 InParanoid:Q9C9A9 OMA:EAKCENG
PhylomeDB:Q9C9A9 ProtClustDB:CLSN2914358 Genevestigator:Q9C9A9
GermOnline:AT1G73870 Uniprot:Q9C9A9
Length = 392
Score = 126 (49.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 22/45 (48%), Positives = 36/45 (80%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 515
REA ++++++KR+ R F KKIRY RK AE+RPR++G+FV++ +
Sbjct: 345 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTS 389
>UNIPROTKB|Q4K7Y0 [details] [associations]
symbol:kdpE_2 "KDP operon transcriptional regulatory
protein KdpE" species:220664 "Pseudomonas protegens Pf-5"
[GO:0006813 "potassium ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0006813 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 KO:K07667 RefSeq:YP_261653.1
ProteinModelPortal:Q4K7Y0 SMR:Q4K7Y0 STRING:Q4K7Y0 GeneID:3478684
KEGG:pfl:PFL_4569 PATRIC:19878574 OMA:TEHTHYL
ProtClustDB:CLSK937902 BioCyc:PFLU220664:GIX8-4602-MONOMER
Uniprot:Q4K7Y0
Length = 230
Score = 121 (47.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 37/131 (28%), Positives = 63/131 (48%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S RIL+ ++++N V L +QV S ++ + ++A DL++ ++ LP
Sbjct: 2 SSARILIVEDEANIRRFVGIALEDEGFQVFEADSVKRAL--IHAASRQPDLVIVDLGLPD 59
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G +++ + + +P++++SA+D V L GA DYLVKP ELL
Sbjct: 60 GDGKQLISEL---RGWLAVPILVLSARDREDEKVAALDAGADDYLVKPFGVPELLARIRA 116
Query: 151 MWRRRRMLGLA 161
RR G A
Sbjct: 117 QLRRHGQSGTA 127
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 104 (41.7 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 69 IDALN-AEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127
++AL A +DL L ++++P G +++ I EL IP +M+S + + S + +
Sbjct: 36 VEALERALEMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGI 95
Query: 128 RLGAADYLVKPLRTNELLNLWTHM 151
+GA Y+VKP+ EL T M
Sbjct: 96 HMGANLYMVKPVNPEELQQTVTLM 119
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 104 (41.7 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 27/122 (22%), Positives = 63/122 (51%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
R+L+ D+ + + ++LVK Y+V + Q ++ D+ + ++ +P
Sbjct: 4 RVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKPDV--VTMDITMPEMD 61
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G++ ++ I + +I IM SA + ++V++ ++ GA D++VKP + + +L +
Sbjct: 62 GIQAVREIKKIDPNAKI--IMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAFEKTL 119
Query: 153 RR 154
+R
Sbjct: 120 KR 121
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 104 (41.7 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 69 IDALN-AEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127
++AL A +DL L ++++P G +++ I EL IP +M+S + + S + +
Sbjct: 36 VEALERALEMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGI 95
Query: 128 RLGAADYLVKPLRTNELLNLWTHM 151
+GA Y+VKP+ EL T M
Sbjct: 96 HMGANLYMVKPVNPEELQQTVTLM 119
>TIGR_CMR|SO_3196 [details] [associations]
symbol:SO_3196 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P10958 RefSeq:NP_718751.1
ProteinModelPortal:Q8ECE7 GeneID:1170890 KEGG:son:SO_3196
PATRIC:23526076 HOGENOM:HOG000289704 OMA:GLLDWGK
ProtClustDB:CLSK907046 Uniprot:Q8ECE7
Length = 367
Score = 125 (49.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
V IL ++D V + L QV Q + ++ + D+ILA++ +P
Sbjct: 6 VSILWVEDDPVFRQIVATFLSGRGAQVVQAGDGEQGL--IHFKQQRFDIILADLSMPKLG 63
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
GL MLK +++ + L +P I++S + ++ VV+ LR+GA DYLVKP+
Sbjct: 64 GLDMLKEMSKLEPL--VPSIVISGNNVMADVVEALRIGACDYLVKPV 108
>TIGR_CMR|BA_3067 [details] [associations]
symbol:BA_3067 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P06628
RefSeq:NP_845397.1 RefSeq:YP_019708.1 RefSeq:YP_029111.1
ProteinModelPortal:Q81NV5 DNASU:1088217
EnsemblBacteria:EBBACT00000009080 EnsemblBacteria:EBBACT00000017281
EnsemblBacteria:EBBACT00000021032 GeneID:1088217 GeneID:2817324
GeneID:2850761 KEGG:ban:BA_3067 KEGG:bar:GBAA_3067 KEGG:bat:BAS2853
OMA:LTKEHFF ProtClustDB:CLSK886597
BioCyc:BANT260799:GJAJ-2916-MONOMER
BioCyc:BANT261594:GJ7F-3019-MONOMER Uniprot:Q81NV5
Length = 223
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 35/112 (31%), Positives = 63/112 (56%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ ++D D + +L + Y V + R+V+D ++ +IDL++ +V LP G
Sbjct: 6 ILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIH----EIDLVVMDVMLPGEDGY 61
Query: 95 KMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++ K I K L IP+I +SA++++ +K L +G +Y++KP ELL
Sbjct: 62 QITKKI---KNLGLNIPIIFLSARNDMDSKLKGLTIGE-EYMIKPFDPRELL 109
>UNIPROTKB|Q11156 [details] [associations]
symbol:regX3 "Sensory transduction protein regX3"
species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0019220 "regulation of phosphate
metabolic process" evidence=IDA] [GO:0080134 "regulation of
response to stress" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
Length = 227
Score = 120 (47.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 34/112 (30%), Positives = 60/112 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ +++ + +D + LL K ++ T V + + G+DI +L ++ LP G
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADI--VLLDLMLPGMSGT 61
Query: 95 KMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNELL 145
+ K + + +PVIM++A+D E+ VV L LGA DY+ KP EL+
Sbjct: 62 DVCKQL---RARSSVPVIMVTARDSEIDKVVG-LELGADDYVTKPYSARELI 109
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 38/133 (28%), Positives = 70/133 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
++L+ ++D + ++ L + V +V + + AL E DLIL ++ LP
Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEE---YDLILLDLMLPGID 59
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL-NLWTHM 151
G ++L+ + +K+ PV+++SA+ E ++ L LGA DY+ KP +EL+ + H+
Sbjct: 60 GFEVLRKVRAEKDT---PVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116
Query: 152 WRRRRMLGLAEKN 164
R R+ G KN
Sbjct: 117 GRYERLTG-GRKN 128
>TIGR_CMR|CHY_2567 [details] [associations]
symbol:CHY_2567 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483 RefSeq:YP_361360.1
ProteinModelPortal:Q3A924 SMR:Q3A924 STRING:Q3A924 GeneID:3728531
KEGG:chy:CHY_2567 PATRIC:21278183
BioCyc:CHYD246194:GJCN-2566-MONOMER Uniprot:Q3A924
Length = 236
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 35/112 (31%), Positives = 63/112 (56%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D++ V S L+K Y+V + + R+ +++ E D LI+ + +P G
Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPD--LIVLDWMMPEMSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++L+ I R K +IP+IM++A+ +EV ++ G DY+VKP EL
Sbjct: 62 IEVLREI-RKKS--QIPIIMLTAKTEEVDKLIG-FEFGVDDYVVKPFSLREL 109
>UNIPROTKB|P69228 [details] [associations]
symbol:baeR "BaeR-Phosphorylated DNA-binding
transcriptional activator" species:83333 "Escherichia coli K-12"
[GO:0005622 "intracellular" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000160 "phosphorelay
signal transduction system" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IEP;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:2001023 "regulation of response to
drug" evidence=IMP] [GO:2000144 "positive regulation of
DNA-dependent transcription, initiation" evidence=IDA] [GO:0000986
"bacterial-type RNA polymerase core promoter proximal region
sequence-specific DNA binding" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 EMBL:D14054 PIR:JX0283
RefSeq:NP_416583.1 RefSeq:YP_490321.1 ProteinModelPortal:P69228
SMR:P69228 IntAct:P69228 PRIDE:P69228
EnsemblBacteria:EBESCT00000000767 EnsemblBacteria:EBESCT00000014834
GeneID:12931433 GeneID:946605 KEGG:ecj:Y75_p2042 KEGG:eco:b2079
PATRIC:32119491 EchoBASE:EB1575 EcoGene:EG11618 KO:K07664
OMA:EADACRM ProtClustDB:PRK10710 BioCyc:EcoCyc:BAER-MONOMER
BioCyc:ECOL316407:JW2064-MONOMER Genevestigator:P69228
Uniprot:P69228
Length = 240
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 35/119 (29%), Positives = 63/119 (52%)
Query: 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD 87
ID + RIL+ +++ + L SY T + QV+ + + DLIL ++
Sbjct: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ--TPPDLILLDLM 63
Query: 88 LPMTKGLKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELL 145
LP T GL + + I R + IP++M++A+ +E+ ++ L +GA DY+ KP E++
Sbjct: 64 LPGTDGLTLCREIRRFSD---IPIVMVTAKIEEIDRLLG-LEIGADDYICKPYSPREVV 118
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 30/114 (26%), Positives = 62/114 (54%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S ++ + D++++ + + L Y+ R + +DAL E DL+L ++ +P
Sbjct: 2 SGYKVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALERES--FDLVLLDIRMPR 59
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
G+++L+ I RD+ + VIMM+A + V+ ++ GA DY+ KP ++++
Sbjct: 60 MDGIEVLERI-RDRWPDLV-VIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDM 111
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 38/114 (33%), Positives = 61/114 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALN-AEGSDIDLILAEVDLPMT 91
++ILL +++ + + V L + Y + +V R D L A D LI+ ++ LP
Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGR---DGLYLALKDDYALIILDIMLPGM 57
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
G ++L+ + K+ PVI ++A+D V V+ L GA DYLVKP +ELL
Sbjct: 58 DGWQILQTLRTAKQT---PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELL 108
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 40/134 (29%), Positives = 68/134 (50%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+LL D DS S V SLL++ ++VT + + A+ E DL+L +V +P+ G
Sbjct: 548 VLLVD-DSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIGREA--FDLVLMDVQMPVMDG 604
Query: 94 LKMLKYITRDKEL--QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT-H 150
+ ++ I + R+P+I ++A+ CL GA DYL KP+ +EL + + H
Sbjct: 605 FEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRVISRH 664
Query: 151 MWRRRRMLGLAEKN 164
R + L+ +N
Sbjct: 665 CCRESKPSALSAEN 678
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 22/68 (32%), Positives = 46/68 (67%)
Query: 79 IDLILAEVDLPMTKGLKMLKYITRDK-ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
+DL+L ++++P G + L +TR + ELQ +P+I+++++++ ++ L GA+DY+ K
Sbjct: 49 VDLVLCDLEMPRMDGFRFLS-MTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTK 107
Query: 138 PLRTNELL 145
P + EL+
Sbjct: 108 PFDSGELV 115
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 22/68 (32%), Positives = 46/68 (67%)
Query: 79 IDLILAEVDLPMTKGLKMLKYITRDK-ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
+DL+L ++++P G + L +TR + ELQ +P+I+++++++ ++ L GA+DY+ K
Sbjct: 49 VDLVLCDLEMPRMDGFRFLS-MTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTK 107
Query: 138 PLRTNELL 145
P + EL+
Sbjct: 108 PFDSGELV 115
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
Identities = 25/111 (22%), Positives = 53/111 (47%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ D+ S+ V L Y V + + L G + LI+++V++P G+
Sbjct: 5 VLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLT--GQKVHLIISDVNMPNMDGI 62
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+K + + + P+IM++ + + S + GA ++VKP + ++L
Sbjct: 63 TFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQML 113
>TIGR_CMR|CPS_0778 [details] [associations]
symbol:CPS_0778 "sigma-54 dependent DNA-binding response
regulator, Fis family" species:167879 "Colwellia psychrerythraea
34H" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688
ProtClustDB:CLSK2525576 RefSeq:YP_267527.1
ProteinModelPortal:Q488I7 STRING:Q488I7 GeneID:3520721
KEGG:cps:CPS_0778 PATRIC:21464863 OMA:VGPSDAN
BioCyc:CPSY167879:GI48-864-MONOMER Uniprot:Q488I7
Length = 461
Score = 123 (48.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 27/116 (23%), Positives = 64/116 (55%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--T 91
+IL+ D+D N ++ +L + + +V +P+ ++ L + +DLIL +++ T
Sbjct: 4 KILIADDDINIIASLKFVLADEGFDIVAVTTPQAALENLKIQS--VDLILLDMNFQQDTT 61
Query: 92 KGLKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
G + ++ + EL+ +P+I+M+ + + V+ ++ GA D++ KP + +L+
Sbjct: 62 SGAEGVQLVEAITELELNVPIIVMTGWATIDIAVEAMQAGAKDFIQKPWKNERMLS 117
Score = 45 (20.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 16/63 (25%), Positives = 25/63 (39%)
Query: 412 SMLPQYNHLPQCVPHVNGMASFPYYPINMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRR 471
SML Y H V+ + P+NM P + + + T+ K N++ R
Sbjct: 189 SMLAAYVH------SVSSREKHSFVPVNMGAIPESLFESEMFGHVKGAFTDAKENRIGRF 242
Query: 472 EAA 474
E A
Sbjct: 243 EMA 245
>TAIR|locus:2031180 [details] [associations]
symbol:BBX15 "B-box domain protein 15" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016020 "membrane" evidence=IDA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281 GO:GO:0016020
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AY093174
IPI:IPI00533844 PIR:E86384 RefSeq:NP_173915.2 UniGene:At.27494
EnsemblPlants:AT1G25440.1 GeneID:839130 KEGG:ath:AT1G25440
TAIR:At1g25440 eggNOG:NOG293508 HOGENOM:HOG000240360
InParanoid:Q8RWD0 OMA:SDEISHE PhylomeDB:Q8RWD0
ProtClustDB:CLSN2689085 Genevestigator:Q8RWD0 Uniprot:Q8RWD0
Length = 417
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 515
REA + ++R+KR+ R F KKIRY RK AE+RPR++G+FV++ +
Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRAS 405
>UNIPROTKB|Q9KNL8 [details] [associations]
symbol:VC_2714 "Transcriptional regulator OmpR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 34/113 (30%), Positives = 61/113 (53%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++L+ D+D+ + L + +QV SV + Q+ L E + L++ ++ LP G
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRE--NFHLMVLDLMLPGEDG 63
Query: 94 LKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELL 145
L + + + + IP++M++A+ DE+ +V L +GA DYL KP ELL
Sbjct: 64 LSICRRLRNSNNM--IPILMLTAKGDEIDRIVG-LEVGADDYLPKPFNPRELL 113
>TIGR_CMR|VC_2714 [details] [associations]
symbol:VC_2714 "transcriptional regulator OmpR,"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 34/113 (30%), Positives = 61/113 (53%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++L+ D+D+ + L + +QV SV + Q+ L E + L++ ++ LP G
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRE--NFHLMVLDLMLPGEDG 63
Query: 94 LKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELL 145
L + + + + IP++M++A+ DE+ +V L +GA DYL KP ELL
Sbjct: 64 LSICRRLRNSNNM--IPILMLTAKGDEIDRIVG-LEVGADDYLPKPFNPRELL 113
>TIGR_CMR|BA_0585 [details] [associations]
symbol:BA_0585 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
DNASU:1087912 EnsemblBacteria:EBBACT00000008912
EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
Length = 223
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 36/137 (26%), Positives = 65/137 (47%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
V+ILL D++ + L Y S + + + E D D+IL +V +P
Sbjct: 2 VKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLI--EQKDFDIILLDVMMPNMD 59
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G I +++ +P+IM++A+++ +VK L +GA DY+ KP + L+ +
Sbjct: 60 GWDTCYQI---RQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116
Query: 153 RRRRMLGLAEKNILSYD 169
RR + G N + +D
Sbjct: 117 RRTKKDGFVSFNGIEWD 133
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 36/115 (31%), Positives = 62/115 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
++IL+ ++D A+ S +K + VT + + R E +L++ ++ LP
Sbjct: 1 MKILIIEDDYKIVQAI-SFALKIGWPDVTLLSASRGESGLRMIEEQRPNLVILDLSLPDM 59
Query: 92 KGLKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GL++LK D L P+I+++ + E S VV+ L LGA +Y++KP R ELL
Sbjct: 60 DGLEVLK----DARLFCDTPIIILTVRSEESDVVEALELGANEYIIKPFRQMELL 110
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ +++ + V L Y+ ++ + ++ + DLIL +V LP G
Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFG--NGNWDLILLDVMLPNISG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
L++L+ I + IP+I+++A+D V V L GA+DY+ KP + ELL
Sbjct: 62 LEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELL 111
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 101 (40.6 bits), Expect = 0.00016, P = 0.00016
Identities = 26/114 (22%), Positives = 58/114 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
K+++L+ D+ S + L + + Q+TS Q + + E L++++ ++P
Sbjct: 6 KIKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIM--EQQPHHLVISDFNMPK 63
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL L + + ++ I+++AQ + ++V K +LGA + L KP +++
Sbjct: 64 MDGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKM 117
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 101 (40.6 bits), Expect = 0.00016, P = 0.00016
Identities = 26/114 (22%), Positives = 58/114 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
K+++L+ D+ S + L + + Q+TS Q + + E L++++ ++P
Sbjct: 6 KIKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIM--EQQPHHLVISDFNMPK 63
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL L + + ++ I+++AQ + ++V K +LGA + L KP +++
Sbjct: 64 MDGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKM 117
>TAIR|locus:2201277 [details] [associations]
symbol:BBX14 "B-box domain protein 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA;TAS] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 HOGENOM:HOG000240360 ProtClustDB:CLSN2689085
EMBL:AC011915 EMBL:AY054625 EMBL:AY081541 EMBL:AY084427
IPI:IPI00518479 PIR:D96709 RefSeq:NP_564932.1 UniGene:At.23999
UniGene:At.69467 UniGene:At.74856 IntAct:Q8LG76 STRING:Q8LG76
PRIDE:Q8LG76 EnsemblPlants:AT1G68520.1 GeneID:843181
KEGG:ath:AT1G68520 TAIR:At1g68520 eggNOG:NOG257442
InParanoid:Q8LG76 OMA:AFLCHAC PhylomeDB:Q8LG76
Genevestigator:Q8LG76 GermOnline:AT1G68520 Uniprot:Q8LG76
Length = 406
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 513
REA + ++R+KR+ R F KKIRY RK AE+RPR++G+FV++
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 399
>TIGR_CMR|BA_0287 [details] [associations]
symbol:BA_0287 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842837.1 RefSeq:YP_016897.1 RefSeq:YP_026554.1
ProteinModelPortal:Q81VC5 DNASU:1085878
EnsemblBacteria:EBBACT00000011028 EnsemblBacteria:EBBACT00000016417
EnsemblBacteria:EBBACT00000022481 GeneID:1085878 GeneID:2819460
GeneID:2851280 KEGG:ban:BA_0287 KEGG:bar:GBAA_0287 KEGG:bat:BAS0273
OMA:NYNLVIL ProtClustDB:CLSK917934
BioCyc:BANT260799:GJAJ-313-MONOMER
BioCyc:BANT261594:GJ7F-322-MONOMER Uniprot:Q81VC5
Length = 237
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 35/141 (24%), Positives = 74/141 (52%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+RIL+ D+D + + L + Y V + + N ++ +++ ++ +P
Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQ--NNYSIVILDLMMPKVD 61
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G+++ + + RDK +P++M++A+D EV ++ L +GA DY+ KP +E++ +
Sbjct: 62 GIEVCRKL-RDKT--NVPILMLTAKDHEVDKILG-LSIGADDYITKPFSIHEVVARVKAL 117
Query: 152 WRRRRMLG----LAEKNILSY 168
RR +LG + EK L++
Sbjct: 118 IRRFLVLGSNINVQEKTTLAF 138
>TIGR_CMR|CPS_2524 [details] [associations]
symbol:CPS_2524 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_269240.1 ProteinModelPortal:Q481M9 STRING:Q481M9
GeneID:3520591 KEGG:cps:CPS_2524 PATRIC:21468113 OMA:NIANYME
ProtClustDB:CLSK938208 BioCyc:CPSY167879:GI48-2587-MONOMER
Uniprot:Q481M9
Length = 240
Score = 118 (46.6 bits), Expect = 0.00019, P = 0.00019
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
DL++ +++LP+ GL++ K + R + +P+IM++A+D + + LGA DYL KP
Sbjct: 51 DLVILDLNLPVMDGLEVCKKL-RKQARHHVPIIMLTARDSIDDKISGFTLGADDYLTKPF 109
Query: 140 RTNEL 144
EL
Sbjct: 110 SLEEL 114
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ ++D+ +A+ L Y S + AL ++ +D+++++V + G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQ--HVDIVISDVQMGGMSG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
L +LK I +PV++M+A + V+ ++ GA +Y+ KP LLN+
Sbjct: 63 LSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ ++D+ +A+ L Y S + AL ++ +D+++++V + G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQ--HVDIVISDVQMGGMSG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
L +LK I +PV++M+A + V+ ++ GA +Y+ KP LLN+
Sbjct: 63 LSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>TIGR_CMR|CBU_2006 [details] [associations]
symbol:CBU_2006 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 KO:K02483
RefSeq:NP_820981.1 ProteinModelPortal:Q83AA0 PRIDE:Q83AA0
GeneID:1209919 KEGG:cbu:CBU_2006 PATRIC:17932757 OMA:AKNGSEM
ProtClustDB:CLSK915183 BioCyc:CBUR227377:GJ7S-1980-MONOMER
Uniprot:Q83AA0
Length = 245
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 38/156 (24%), Positives = 77/156 (49%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ D+DS+ D + L + ++ + + ++ L + +DL++ ++ +P GL
Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQA--VDLVILDIMMPGDDGL 64
Query: 95 KMLKYITRDKELQRIPVIMMSA-QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+ + + + IP++M++A +EV ++ L +GA DYL KP ELL + R
Sbjct: 65 TLCRQMRANST---IPILMLTAISEEVDRILG-LEMGADDYLSKPFNPRELLARVRAILR 120
Query: 154 RRR-----MLGLAEKNILSYDFDLVASDPSDANTNS 184
R + + G+ + Y+F + DP++ S
Sbjct: 121 RSQGGGGSLNGIGTNERVIYEFAGWSLDPAERRLKS 156
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 30/118 (25%), Positives = 62/118 (52%)
Query: 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD 87
+D + RIL+ D+D++ ++ + +L + + Q + A+ D L+L ++
Sbjct: 1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPD--LVLLDLM 58
Query: 88 LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
LP G+ + + + D +P++M++A+ + VV L GA DY++KP + EL+
Sbjct: 59 LPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELV 113
>TIGR_CMR|CHY_1413 [details] [associations]
symbol:CHY_1413 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
Length = 228
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 36/133 (27%), Positives = 66/133 (49%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
ILL D++ + + L K + V + ++ + + IDLI+ ++ LP G+
Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEH--KIDLIILDLMLPEIDGM 61
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154
++ K I ++ +P+IM++A+ E + L +GA DY+VKP E++ + RR
Sbjct: 62 EIAKEI---RKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRR 118
Query: 155 RRMLGLAEKNILS 167
G+ EK S
Sbjct: 119 SS--GIPEKEASS 129
>TIGR_CMR|CPS_4164 [details] [associations]
symbol:CPS_4164 "response regulator/phosphatase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0016791 "phosphatase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081 eggNOG:COG3437
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:YP_270816.1
ProteinModelPortal:Q47WK6 STRING:Q47WK6 GeneID:3518511
KEGG:cps:CPS_4164 PATRIC:21471189 OMA:CELIYNA
BioCyc:CPSY167879:GI48-4174-MONOMER Uniprot:Q47WK6
Length = 352
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 29/112 (25%), Positives = 60/112 (53%)
Query: 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD 87
+D K +L+ D++S++ D V S +++ Y+V + + + +A+ D+IL ++
Sbjct: 9 VDGDKATVLIVDDNSDNLD-VLSGVLRPFYKVKAAINGELALKVASAKNKP-DIILLDIM 66
Query: 88 LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
+P G ++ + + + IPVI ++A+ E +LGA DY+ KP+
Sbjct: 67 MPGMDGYEVCQQLKLNPSTANIPVIFVTAKTETKDEEAGFKLGAVDYITKPI 118
>TIGR_CMR|SO_1558 [details] [associations]
symbol:SO_1558 "phosphate regulon response regulator PhoB"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 RefSeq:NP_717171.2 ProteinModelPortal:Q8EGP1
GeneID:1169364 KEGG:son:SO_1558 PATRIC:23522760
ProtClustDB:CLSK906318 Uniprot:Q8EGP1
Length = 229
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
DLIL + P G+++ K + +D+ ++IP+IM++A+ E VK L +GA DY+ KP
Sbjct: 48 DLILLDWMFPGGSGIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPF 107
Query: 140 RTNELL 145
EL+
Sbjct: 108 SPKELV 113
>TIGR_CMR|GSU_3418 [details] [associations]
symbol:GSU_3418 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 HOGENOM:HOG000058487
RefSeq:NP_954458.1 ProteinModelPortal:Q746V0 GeneID:2686607
KEGG:gsu:GSU3418 PATRIC:22029693 OMA:LSIYSFP
ProtClustDB:CLSK2522262 BioCyc:GSUL243231:GH27-3392-MONOMER
Uniprot:Q746V0
Length = 490
Score = 129 (50.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 52 LVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111
++KCS RQV+D L +++ LIL ++ +P G +L+ I +E IPV
Sbjct: 37 IIKCS-------DSRQVMDILRE--TEVSLILLDLTMPYFSGTDLLQMI--GQEYPDIPV 85
Query: 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
I++S ++V V+C++LGA DY VK + L+
Sbjct: 86 IVLSGLNQVETAVRCMQLGAFDYYVKTVEKERLI 119
Score = 37 (18.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 401 YQKNLHELQNHSMLPQYNHLPQCVPH 426
++ N H++Q + ++ LP + H
Sbjct: 314 FRLNAHQVQIPPLRERFEDLPLLIDH 339
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 34/131 (25%), Positives = 65/131 (49%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ D++ + + L Y+V + + L E +++ L++ ++ +P G+
Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLL--EENEVHLVVLDIMMPKVDGI 63
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL-NLWTHMWR 153
M I +KE+ P+IM+SA+ + + L GA DY+ KP EL+ + + + R
Sbjct: 64 HMCMKIREEKEM---PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
Query: 154 RRRMLGLAEKN 164
+M G A +N
Sbjct: 121 YMKMNGFAIQN 131
>UNIPROTKB|Q9KT55 [details] [associations]
symbol:VC_1050 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 121 (47.7 bits), Expect = 0.00023, P = 0.00023
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTKG 93
ILL D+D L K YQV + +D L + DLIL ++ +P+ G
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENG---LDGLRKLRDHEPDLILCDLSMPVLNG 83
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTN 142
++ ++ ++ +P++++SA +E++ V K LR G D+L KP+ TN
Sbjct: 84 IEFVEEVS--SSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI-TN 129
>TIGR_CMR|VC_1050 [details] [associations]
symbol:VC_1050 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 121 (47.7 bits), Expect = 0.00023, P = 0.00023
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTKG 93
ILL D+D L K YQV + +D L + DLIL ++ +P+ G
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENG---LDGLRKLRDHEPDLILCDLSMPVLNG 83
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTN 142
++ ++ ++ +P++++SA +E++ V K LR G D+L KP+ TN
Sbjct: 84 IEFVEEVS--SSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI-TN 129
>TIGR_CMR|SPO_1892 [details] [associations]
symbol:SPO_1892 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
ProtClustDB:CLSK933667 Uniprot:Q5LS76
Length = 444
Score = 122 (48.0 bits), Expect = 0.00024, P = 0.00024
Identities = 30/126 (23%), Positives = 63/126 (50%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
++I + D++ + ++ L Y + S + + L +E I +++++ +P
Sbjct: 5 MKIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLGSEYPGI--VISDIKMPGMD 62
Query: 93 GLKMLKYIT-RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G++ LK + D L PVIM++ +V + V+ +R+GA D+L KP + + +L
Sbjct: 63 GMQFLKKLMGADSSL---PVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSDLAKRA 119
Query: 152 WRRRRM 157
RR+
Sbjct: 120 SNARRL 125
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 99 (39.9 bits), Expect = 0.00026, P = 0.00026
Identities = 30/112 (26%), Positives = 56/112 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ + + K YQ + Q +D + E D L+L ++ +P G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD--LVLLDMKIPGMDG 62
Query: 94 LKMLKYITRDKEL-QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++LK R K + + I VI+M+A E+ ++ + LGA + KP +E+
Sbjct: 63 IEILK---RMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>UNIPROTKB|Q4K4R2 [details] [associations]
symbol:creB "DNA-binding response regulator CreB"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000076
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07663 ProtClustDB:PRK11083
RefSeq:YP_262771.2 ProteinModelPortal:Q4K4R2 GeneID:3480085
KEGG:pfl:PFL_5713 PATRIC:19880927
BioCyc:PFLU220664:GIX8-5753-MONOMER Uniprot:Q4K4R2
Length = 226
Score = 116 (45.9 bits), Expect = 0.00026, P = 0.00026
Identities = 33/111 (29%), Positives = 59/111 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ ++++ +D + L + T + R ++ + + S DLI+ ++ LP G
Sbjct: 4 ILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALE--HQQASPADLIILDIGLPDISGF 61
Query: 95 KMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNEL 144
+ K + R E +PV+ +SA+D E+ VV L +GA DY+VKP E+
Sbjct: 62 ETCKQLRRFSE---VPVMFLSARDGEIDRVVG-LEIGADDYVVKPFSPREV 108
>UNIPROTKB|O07776 [details] [associations]
symbol:tcrA "Transcriptional regulatory protein TcrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000156 "phosphorelay
response regulator activity" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0035556 "intracellular signal
transduction" evidence=IDA] [GO:0070298 "negative regulation of
phosphorelay signal transduction system" evidence=IDA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005886
GO:GO:0005737 GO:GO:0006355 GenomeReviews:AL123456_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:BX842574
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034815 GO:GO:0070298 PIR:E70909 RefSeq:NP_215116.1
RefSeq:YP_006513938.1 HSSP:Q9WYN0 ProteinModelPortal:O07776
SMR:O07776 PRIDE:O07776 EnsemblBacteria:EBMYCT00000002096
GeneID:13318480 GeneID:887870 KEGG:mtu:Rv0602c KEGG:mtv:RVBD_0602c
PATRIC:18149834 TubercuList:Rv0602c KO:K02483
ProtClustDB:CLSK790622 Uniprot:O07776
Length = 253
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 35/116 (30%), Positives = 61/116 (52%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S VRIL+ +++ + + L + + V +V R + A+ +G D D ++ +V LP
Sbjct: 21 SGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAV--DGGDYDAVVLDVMLPG 78
Query: 91 TKGLKMLKYITRDKELQRI--PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
G ++ + R QR+ PV+M++A+ V+ + L GA DYL KP +EL
Sbjct: 79 IDGFEVCARLRR----QRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDEL 130
>UNIPROTKB|Q50806 [details] [associations]
symbol:trcR "Response regulator homolog TrcR" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0045892 GO:GO:0045893
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
EMBL:AL123456 EMBL:U88959 PIR:D70624 RefSeq:NP_215549.1
RefSeq:YP_006514396.1 SMR:Q50806 EnsemblBacteria:EBMYCT00000001946
GeneID:13319598 GeneID:887957 KEGG:mtu:Rv1033c KEGG:mtv:RVBD_1033c
PATRIC:18150824 TubercuList:Rv1033c KO:K07672 OMA:IAHNGRE
ProtClustDB:CLSK790905 Uniprot:Q50806
Length = 257
Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
Identities = 36/126 (28%), Positives = 64/126 (50%)
Query: 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDL 88
D S +R+LL D++ ++ V L + V ++ I + G D+ L+L ++ L
Sbjct: 28 DGSPIRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDV-LVL-DIML 85
Query: 89 PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLW 148
P GL++L+ + R+ ++ P + ++A+D V V L GA DY+ KP EL+
Sbjct: 86 PDVDGLEILRRV-RESDVYT-PTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARL 143
Query: 149 THMWRR 154
+ RR
Sbjct: 144 RGLLRR 149
>TAIR|locus:2043288 [details] [associations]
symbol:AT2G47890 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009805 "coumarin biosynthetic process"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AC005309 EMBL:AC006072 EMBL:BT023413 IPI:IPI00543399
PIR:G84920 RefSeq:NP_182310.1 UniGene:At.12948 STRING:O82256
EnsemblPlants:AT2G47890.1 GeneID:819401 KEGG:ath:AT2G47890
TAIR:At2g47890 eggNOG:NOG271369 HOGENOM:HOG000240051
InParanoid:O82256 OMA:CSRHARA PhylomeDB:O82256
ProtClustDB:CLSN2683730 Genevestigator:O82256 Uniprot:O82256
Length = 332
Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
Identities = 47/184 (25%), Positives = 87/184 (47%)
Query: 345 SSTPPTDFPQNRN-----FKDEKFFQPQMPPTRNEP-------PQAT----YQYYMSGAM 388
+ PP P+NR+ +KDE Q + +R+EP P A +Q+
Sbjct: 150 TDVPP--LPKNRHATCGKYKDEMIRQLR-GLSRSEPGCLKFETPDAEIDAGFQFLAPDLF 206
Query: 389 NQVMLPSSSAQMYQKNLHELQNHSMLPQYNHLPQCVPHVNGMASFPYYPINMCLQPGQVS 448
+ L S Q++ + S+L + + +V+ +S P++ CL +
Sbjct: 207 STCELESGLKWFDQQDHEDFPYCSLLKNLSESDEKPENVDRESSV-MVPVSGCLNRCEEE 265
Query: 449 ANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRG 508
P ++ S ++N ++R +AL ++++K+K R ++K IRY +RK AE R R+RG
Sbjct: 266 TVMVPVITSTRSMTHEINSLERN-SALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRG 324
Query: 509 QFVR 512
+F +
Sbjct: 325 RFAK 328
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 121 (47.7 bits), Expect = 0.00032, P = 0.00032
Identities = 35/113 (30%), Positives = 56/113 (49%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K +IL+ D++ ++ L K Y V S + + + E D L+L ++ LP
Sbjct: 3 KTKILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVREEQPD--LVLLDIQLPGI 60
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL+ L+ I E I VIM++A + V +RLGA DY+ KP +E+
Sbjct: 61 SGLEALEKIKEYDE--EILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEM 111
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 98 (39.6 bits), Expect = 0.00033, P = 0.00033
Identities = 20/115 (17%), Positives = 58/115 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K ++L D+ + + L ++ + ++ L E S+ D+I+ ++++P
Sbjct: 2 KKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVL--EQSNPDVIVTDINMPRL 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
G ++ + R+++ + IP+++++ + + + + GA ++VKP +L++
Sbjct: 60 DGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKPFDPAKLID 114
>TIGR_CMR|GSU_0789 [details] [associations]
symbol:GSU_0789 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_951846.1 ProteinModelPortal:Q74F20 GeneID:2685295
KEGG:gsu:GSU0789 PATRIC:22024339 OMA:HAVAARN
BioCyc:GSUL243231:GH27-807-MONOMER Uniprot:Q74F20
Length = 125
Score = 98 (39.6 bits), Expect = 0.00033, P = 0.00033
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTKG 93
+L+CD++ + ++ +V + + ++ + + D L+L ++ LP G
Sbjct: 6 VLICDDEEGMLRYLKKMIEAAGLRVETFGNGTSLLARIEGGDPGDASLLLQDMRLPDADG 65
Query: 94 LKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
L++L R KEL+ +PV+MM+A VV GA+D+L KP +L +
Sbjct: 66 LEILH---RVKELRPALPVVMMTAYACDEVVRAAFDGGASDFLPKPFTREAVLGV 117
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 98 (39.6 bits), Expect = 0.00033, P = 0.00033
Identities = 29/125 (23%), Positives = 58/125 (46%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
++ +L+ D+D N + LL +VTS + +D + + D+++ + +P
Sbjct: 3 RINVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVRK--TTFDMVITDFSMPGM 60
Query: 92 KGLKMLKYITRDKELQR-IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
GL++ + KEL +PV+M++ + ++ +G L KP+ LL H
Sbjct: 61 NGLELAAAV---KELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRLLADIRH 117
Query: 151 MWRRR 155
RR+
Sbjct: 118 FSRRK 122
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 98 (39.6 bits), Expect = 0.00033, P = 0.00033
Identities = 20/115 (17%), Positives = 58/115 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K ++L D+ + + L ++ + ++ L E S+ D+I+ ++++P
Sbjct: 2 KKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVL--EQSNPDVIVTDINMPRL 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
G ++ + R+++ + IP+++++ + + + + GA ++VKP +L++
Sbjct: 60 DGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKPFDPAKLID 114
>UNIPROTKB|Q74CL9 [details] [associations]
symbol:GSU1654 "Response receiver-modulated cyclic
diguanylate phosphodiesterase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10
InterPro:IPR006675 TIGRFAMs:TIGR00277 HOGENOM:HOG000266481
RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9 GeneID:2687011
KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE ProtClustDB:CLSK828468
BioCyc:GSUL243231:GH27-1639-MONOMER Uniprot:Q74CL9
Length = 349
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 33/128 (25%), Positives = 64/128 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K IL D++ D + + L + Y S + D L + ++L L ++ +P T
Sbjct: 2 KATILTVDDEEMIRDLLVTALSREGYDCFQAGSADEARDVLL--NNRVELALLDIMMPGT 59
Query: 92 KGLKMLKYITRDKELQRIPVIMM-SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G+ +LK I K++ V++M +A ++ ++C+ LGA DY++KP +L +
Sbjct: 60 SGVDLLKEI---KKISADTVVLMVTAISDMETAMRCIHLGADDYILKPFDIERVLLTIKN 116
Query: 151 MWRRRRML 158
++R+L
Sbjct: 117 SLEKQRLL 124
>TIGR_CMR|GSU_1654 [details] [associations]
symbol:GSU_1654 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001789 InterPro:IPR003607
InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0008152 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 InterPro:IPR006675 TIGRFAMs:TIGR00277
HOGENOM:HOG000266481 RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9
GeneID:2687011 KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE
ProtClustDB:CLSK828468 BioCyc:GSUL243231:GH27-1639-MONOMER
Uniprot:Q74CL9
Length = 349
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 33/128 (25%), Positives = 64/128 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
K IL D++ D + + L + Y S + D L + ++L L ++ +P T
Sbjct: 2 KATILTVDDEEMIRDLLVTALSREGYDCFQAGSADEARDVLL--NNRVELALLDIMMPGT 59
Query: 92 KGLKMLKYITRDKELQRIPVIMM-SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G+ +LK I K++ V++M +A ++ ++C+ LGA DY++KP +L +
Sbjct: 60 SGVDLLKEI---KKISADTVVLMVTAISDMETAMRCIHLGADDYILKPFDIERVLLTIKN 116
Query: 151 MWRRRRML 158
++R+L
Sbjct: 117 SLEKQRLL 124
>ASPGD|ASPL0000074067 [details] [associations]
symbol:nikA species:162425 "Emericella nidulans"
[GO:0007234 "osmosensory signaling via phosphorelay pathway"
evidence=ISS] [GO:0071474 "cellular hyperosmotic response"
evidence=IMP] [GO:0071470 "cellular response to osmotic stress"
evidence=IMP] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0018106 "peptidyl-histidine phosphorylation"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEA]
[GO:0071473 "cellular response to cation stress" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 EMBL:BN001303
ProteinModelPortal:C8V8F5 EnsemblFungi:CADANIAT00005966 OMA:IGMTQLT
Uniprot:C8V8F5
Length = 1297
Score = 126 (49.4 bits), Expect = 0.00036, P = 0.00036
Identities = 35/115 (30%), Positives = 62/115 (53%)
Query: 35 ILLC-DNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
ILL DND N AV +L K ++ V+ V + + ++A+ D+ IL +V +P+ G
Sbjct: 1109 ILLAEDNDVNQKLAV-KILEKHNHNVSVVGNGLEAVEAVKQRRYDV--ILMDVQMPVMGG 1165
Query: 94 LKM---LKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ ++ RD L R P+I ++A + KC++ +YL KPL+ N+++
Sbjct: 1166 FEATGKIREYERDSGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMM 1220
>TIGR_CMR|BA_5106 [details] [associations]
symbol:BA_5106 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847292.1 RefSeq:YP_030989.1 RefSeq:YP_052651.1
ProteinModelPortal:Q81K99 DNASU:1084409
EnsemblBacteria:EBBACT00000012632 EnsemblBacteria:EBBACT00000014721
EnsemblBacteria:EBBACT00000022679 GeneID:1084409 GeneID:2821239
GeneID:2851460 KEGG:ban:BA_5106 KEGG:bar:GBAA_5106 KEGG:bat:BAS4745
OMA:VVINPER ProtClustDB:CLSK873134
BioCyc:BANT260799:GJAJ-4799-MONOMER
BioCyc:BANT261594:GJ7F-4958-MONOMER Uniprot:Q81K99
Length = 232
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 33/114 (28%), Positives = 57/114 (50%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
++ IL+ D+++ +D + L K Y V + I + E IDL++ ++ +P
Sbjct: 3 RISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHII--ETQPIDLVVLDIMMPKM 60
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
G ++ + I R K +P+I +SA+ V L LGA DY+ KP EL+
Sbjct: 61 DGYEVTRQI-RAKH--HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELV 111
>TIGR_CMR|SO_4487 [details] [associations]
symbol:SO_4487 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_720008.1 ProteinModelPortal:Q8E908 GeneID:1172082
KEGG:son:SO_4487 PATRIC:23528625 OMA:YLMANPS ProtClustDB:CLSK907675
Uniprot:Q8E908
Length = 220
Score = 114 (45.2 bits), Expect = 0.00041, P = 0.00041
Identities = 40/136 (29%), Positives = 66/136 (48%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+LL ++D + + L K Y V + + A E + ++ ++ LP
Sbjct: 1 MRLLLIEDDIDLVARLIPALNKAGYTVE--HADNGIDGAFLGEEEAFEAVILDLGLPGKP 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL +L + R K L +PV++++A+D V L+ GA DYL KP ELL +
Sbjct: 59 GLSVLSH-WRQKGLA-MPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALI 116
Query: 153 RRRRMLGLAEKNILSY 168
RR G A+ N+L +
Sbjct: 117 RRH--FGRAD-NLLQH 129
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 120 (47.3 bits), Expect = 0.00043, P = 0.00043
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ D++ D + S L + QV + + + L E DIDL++++ +P G
Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQE--DIDLVISDWRMPGMDGP 62
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
++L I + ++PVI+M+A V V+ +R GA DY+ KP +EL
Sbjct: 63 QLLGEIKQ--RYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDEL 110
>UNIPROTKB|P0AFB8 [details] [associations]
symbol:glnG "NtrC transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0050906 "detection of
stimulus involved in sensory perception" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0009399 "nitrogen fixation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0009399 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:L19201 eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:X05173
EMBL:D16509 PIR:B30377 RefSeq:NP_418304.1 RefSeq:YP_491582.1
ProteinModelPortal:P0AFB8 SMR:P0AFB8 IntAct:P0AFB8
EnsemblBacteria:EBESCT00000001207 EnsemblBacteria:EBESCT00000001208
EnsemblBacteria:EBESCT00000001209 EnsemblBacteria:EBESCT00000015316
GeneID:12933634 GeneID:948361 KEGG:ecj:Y75_p3318 KEGG:eco:b3868
PATRIC:32123239 EchoBASE:EB0380 EcoGene:EG10385 KO:K07712
OMA:ARGQSNL ProtClustDB:PRK10923 BioCyc:EcoCyc:PROTEIN-NRI
BioCyc:ECOL316407:JW3839-MONOMER BindingDB:P0AFB8 ChEMBL:CHEMBL3552
Genevestigator:P0AFB8 GO:GO:0050906 TIGRFAMs:TIGR01818
Uniprot:P0AFB8
Length = 469
Score = 120 (47.3 bits), Expect = 0.00044, P = 0.00044
Identities = 31/113 (27%), Positives = 60/113 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+ + D+DS+ + L T+ + +V++AL ++ D+ +L+++ +P GL
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDV--LLSDIRMPGMDGL 63
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+LK I + + +PVI+M+A ++ V + GA DYL KP +E + L
Sbjct: 64 ALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>TIGR_CMR|BA_3261 [details] [associations]
symbol:BA_3261 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845560.1 RefSeq:YP_019897.1 RefSeq:YP_029285.1
ProteinModelPortal:Q81NE3 DNASU:1089115
EnsemblBacteria:EBBACT00000011389 EnsemblBacteria:EBBACT00000014025
EnsemblBacteria:EBBACT00000020758 GeneID:1089115 GeneID:2818827
GeneID:2853015 KEGG:ban:BA_3261 KEGG:bar:GBAA_3261 KEGG:bat:BAS3028
OMA:FELCKKM ProtClustDB:CLSK916983
BioCyc:BANT260799:GJAJ-3090-MONOMER
BioCyc:BANT261594:GJ7F-3193-MONOMER Uniprot:Q81NE3
Length = 225
Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+ ILL D+D + + + L K ++V + + L E +I L + ++ +P
Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKE--NIHLAIVDIMMPFVD 61
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G + + I ++ IPVI+++A+D++ K G DY+VKP E++ +
Sbjct: 62 GYTLCEEI---RKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALL 118
Query: 153 RRRRML 158
RR +ML
Sbjct: 119 RRYQML 124
>TIGR_CMR|GSU_1302 [details] [associations]
symbol:GSU_1302 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 InterPro:IPR021796 Pfam:PF11845 RefSeq:NP_952355.1
ProteinModelPortal:Q74DL4 GeneID:2686509 KEGG:gsu:GSU1302
PATRIC:22025379 HOGENOM:HOG000131064 OMA:DQADAFE
ProtClustDB:CLSK743117 BioCyc:GSUL243231:GH27-1286-MONOMER
Uniprot:Q74DL4
Length = 835
Score = 123 (48.4 bits), Expect = 0.00045, P = 0.00045
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ DND N + AV LL + +VT+V + R+ ID L D +L+ ++ +P G+
Sbjct: 579 LLVEDNDLNRTVAV-GLLTALNQRVTAVTNGREAIDVLRDR--DFELVFMDISMPEMDGI 635
Query: 95 KMLKYITRDKELQRI---PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+ I R + +R P++ ++A + +CL YL KPL EL
Sbjct: 636 EATWAIRRGEAGERARSTPIVFLTAHALAADRERCLEADVTGYLTKPLLREEL 688
>TAIR|locus:2051099 [details] [associations]
symbol:AT2G33350 "AT2G33350" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 ProtClustDB:CLSN2680683 EMBL:AY600556 IPI:IPI00520380
RefSeq:NP_180893.2 UniGene:At.50819 EnsemblPlants:AT2G33350.1
GeneID:817898 KEGG:ath:AT2G33350 TAIR:At2g33350 InParanoid:Q6E267
OMA:GSEINKP PhylomeDB:Q6E267 Genevestigator:Q6E267 Uniprot:Q6E267
Length = 410
Score = 120 (47.3 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 456 GNSPSTEVKMNKV--DRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVR 512
G ST K+ K+ ++R+ + ++ +KR ER F+KKI+Y RK LA+ RPRVRG+F +
Sbjct: 294 GLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK 352
Score = 41 (19.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 322 ENYSQGEDFRSSSSVPDSLSMERSSTPPTDFPQNRN 357
E ++Q + S+S++ + S+T T +N N
Sbjct: 38 ETFNQSSEVTSTSNILEKSGSFHSNTNTTTTTENSN 73
>TIGR_CMR|SPO_0710 [details] [associations]
symbol:SPO_0710 "DNA-binding response regulator ChvI"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:YP_165964.1 ProteinModelPortal:Q5LVJ1 GeneID:3195446
KEGG:sil:SPO0710 PATRIC:23374691 KO:K14981 OMA:ETKVMER
ProtClustDB:CLSK864190 Uniprot:Q5LVJ1
Length = 234
Score = 114 (45.2 bits), Expect = 0.00050, P = 0.00050
Identities = 33/122 (27%), Positives = 64/122 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+I L D+D N +V L ++V + + +DA N + D+ ++ ++ +P G
Sbjct: 3 KIALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVL--DIKMPRMDG 60
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+ +L+ + R K ++PVI ++++D+ V LR+GA DY+ KP L+ + R
Sbjct: 61 MDLLQRL-RQKT--QMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLR 117
Query: 154 RR 155
R+
Sbjct: 118 RQ 119
>TIGR_CMR|CPS_2387 [details] [associations]
symbol:CPS_2387 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_269105.1
ProteinModelPortal:Q482B3 STRING:Q482B3 GeneID:3521255
KEGG:cps:CPS_2387 PATRIC:21467857
BioCyc:CPSY167879:GI48-2450-MONOMER Uniprot:Q482B3
Length = 236
Score = 114 (45.2 bits), Expect = 0.00051, P = 0.00051
Identities = 34/111 (30%), Positives = 59/111 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ D++ + + L +VTSV + + + L + S IDLIL ++ +P GL
Sbjct: 4 ILIVDDNPDIRQPLARYLGDHGMRVTSVDGGKAMRETL--KNSVIDLILLDIMMPGEDGL 61
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ +++ + +IPVI+++A E + V L +GA DY+ KP LL
Sbjct: 62 SLCRFVQSNL---KIPVILLTALTEDTDRVVGLEMGADDYVAKPFNPRVLL 109
>TIGR_CMR|SO_1228 [details] [associations]
symbol:SO_1228 "torcad operon transcriptional regulatory
protein TorR" species:211586 "Shewanella oneidensis MR-1"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 RefSeq:NP_716851.1 ProteinModelPortal:Q8EHJ3
SMR:Q8EHJ3 GeneID:1169054 KEGG:son:SO_1228 PATRIC:23522112
OMA:QHIDLVM Uniprot:Q8EHJ3
Length = 236
Score = 114 (45.2 bits), Expect = 0.00051, P = 0.00051
Identities = 38/138 (27%), Positives = 66/138 (47%)
Query: 54 KCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113
K Y+V Q+ N + IDLI+ +++LP GL + + + + + +I+
Sbjct: 24 KEGYRVVEAADGEQMWYEFNRQ--HIDLIMLDINLPGVDGLSLTREL---RSRSHVGIIL 78
Query: 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELL-NLWTHMWRRRRMLGLAEKNI---LSYD 169
+S +DE + L +GA DY+ KP ELL + +WR ++ AE+ + LS
Sbjct: 79 VSGRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRIS-LVKQAEQALVQELSQP 137
Query: 170 FDLVASDPSDANTNSTTL 187
DL++ + NS L
Sbjct: 138 DDLISFEGYQLELNSRKL 155
>TIGR_CMR|SO_2104 [details] [associations]
symbol:SO_2104 "DNA-binding response regulator YgiX,
putative" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
KO:K02483 RefSeq:NP_717707.1 ProteinModelPortal:Q8EF82
GeneID:1169848 KEGG:son:SO_2104 PATRIC:23523826 OMA:MGMQVDH
ProtClustDB:CLSK906589 Uniprot:Q8EF82
Length = 219
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 39/140 (27%), Positives = 65/140 (46%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+RI+L +++ + + L K QV + S Q + + E I+ ++ LP
Sbjct: 1 MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYHQALVGIKNE--TFSAIVLDLGLPDGN 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G +LK R + + IP I+++A + ++CL +GA DYL KP EL +
Sbjct: 59 GKDLLK-AWRSQGVS-IPTIVLTANTDFDTKLECLDVGADDYLGKPFDVRELAARIRAIV 116
Query: 153 RRRRMLGLAEKNILSYDFDL 172
RR+ L NI + DL
Sbjct: 117 RRQFGLDHNSLNIGALSIDL 136
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 119 (46.9 bits), Expect = 0.00053, P = 0.00053
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 41 DSNSSDAVF-SLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99
D+ S A++ S L + V + R I+++ + DLIL ++ LP G+ +L Y
Sbjct: 4 DTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRR--EPDLILLDLRLPDMTGMDVL-Y 60
Query: 100 ITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
++K +P++ M+A + V+ +R GA D+L+KP + L
Sbjct: 61 AVKEKSPD-VPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRL 104
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 119 (46.9 bits), Expect = 0.00053, P = 0.00053
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 41 DSNSSDAVF-SLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99
D+ S A++ S L + V + R I+++ + DLIL ++ LP G+ +L Y
Sbjct: 4 DTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRR--EPDLILLDLRLPDMTGMDVL-Y 60
Query: 100 ITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
++K +P++ M+A + V+ +R GA D+L+KP + L
Sbjct: 61 AVKEKSPD-VPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRL 104
>TIGR_CMR|SO_2540 [details] [associations]
symbol:SO_2540 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR009061 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0000166 GO:GO:0035556 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46955 HSSP:P06628 RefSeq:NP_718126.1
ProteinModelPortal:Q8EE50 GeneID:1170247 KEGG:son:SO_2540
PATRIC:23524707 HOGENOM:HOG000144199 OMA:VKTRIAN
ProtClustDB:CLSK498300 Uniprot:Q8EE50
Length = 192
Score = 111 (44.1 bits), Expect = 0.00054, P = 0.00054
Identities = 29/125 (23%), Positives = 66/125 (52%)
Query: 22 SSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDL 81
+S + + K IL+ D++ + +A+ L + + + + Q + AE D L
Sbjct: 64 ASNNNELTVDKKSILIIDDELSMRNALRRALQSTPFTILTAQDGFQAGVKVIAEKPD--L 121
Query: 82 ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRT 141
IL ++ LP G +++++I + +L ++ ++++S + + + +RLGA D + KP
Sbjct: 122 ILLDLSLPGLDGFEVIQFIRQRPDLAKLKILVLSGLSSIELA-ESIRLGADDAIAKPFDN 180
Query: 142 NELLN 146
++LL+
Sbjct: 181 HDLLD 185
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 96 (38.9 bits), Expect = 0.00055, P = 0.00055
Identities = 21/111 (18%), Positives = 55/111 (49%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
I+ D+ ++ V L + Y V + + L G+ +D+++ ++++P G+
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKL--AGTRVDMVITDLNMPNLDGI 62
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++K + + + P++M++ + + S + GA ++VKP + +L+
Sbjct: 63 GLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQLV 113
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 96 (38.9 bits), Expect = 0.00055, P = 0.00055
Identities = 21/111 (18%), Positives = 55/111 (49%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
I+ D+ ++ V L + Y V + + L G+ +D+++ ++++P G+
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKL--AGTRVDMVITDLNMPNLDGI 62
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++K + + + P++M++ + + S + GA ++VKP + +L+
Sbjct: 63 GLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQLV 113
>UNIPROTKB|Q48Q61 [details] [associations]
symbol:PSPPH_0146 "Sigma-54 dependent DNA-binding response
regulator" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K10126
OMA:RKHGLNF RefSeq:YP_272455.1 ProteinModelPortal:Q48Q61
STRING:Q48Q61 GeneID:3560165 KEGG:psp:PSPPH_0146 PATRIC:19969281
ProtClustDB:CLSK869164 Uniprot:Q48Q61
Length = 461
Score = 119 (46.9 bits), Expect = 0.00055, P = 0.00055
Identities = 33/137 (24%), Positives = 72/137 (52%)
Query: 23 SGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLI 82
S D ID S+++++L D+DS+ A+ L V S+ + + + + + +
Sbjct: 2 SSDTAID-SQIQVVLIDDDSHLRQALRQTLDLAGLNVLSLSEATGLAERIGRDWPGV--V 58
Query: 83 LAEVDLPMTKGLKMLKYI-TRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRT 141
++++ + GL++L + +D +L PV++++ +V + VK +R GA D+L KP +
Sbjct: 59 VSDIRMQGMDGLELLDQLHAQDPDL---PVLLITGHGDVPLAVKAMRAGAYDFLEKPFAS 115
Query: 142 NELLNLWTHMWRRRRML 158
+ +L+ RR++
Sbjct: 116 DAMLDSVRRALALRRLV 132
>UNIPROTKB|P30843 [details] [associations]
symbol:basR "BasR transcriptional regulator" species:83333
"Escherichia coli K-12" [GO:0035556 "intracellular signal
transduction" evidence=IEA;IDA] [GO:0010041 "response to iron(III)
ion" evidence=IEP;IMP] [GO:0046677 "response to antibiotic"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0046677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
EMBL:U14003 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 GO:GO:0010041 EMBL:D14055 EMBL:AY725270
EMBL:AY725271 EMBL:AY725272 EMBL:AY725273 EMBL:AY725274
EMBL:AY725275 EMBL:AY725276 EMBL:AY725277 EMBL:AY725278
EMBL:AY725279 EMBL:AY725280 EMBL:AY725281 EMBL:AY725282
EMBL:AY725283 EMBL:AY725284 EMBL:AY725285 EMBL:AY725286
EMBL:AY725287 EMBL:AY725288 EMBL:AY725289 EMBL:AY725290
EMBL:AY725291 EMBL:AY725292 EMBL:AY725293 EMBL:AY725294
EMBL:AY725295 EMBL:AY725296 EMBL:AY725297 EMBL:AY725298
EMBL:AY725299 EMBL:AY725300 EMBL:AY725301 EMBL:AY725302
EMBL:AY725303 EMBL:AY725304 EMBL:AY725305 EMBL:AY725306
EMBL:AY725307 EMBL:AY725308 EMBL:AY725309 EMBL:AY725310
EMBL:AY725311 EMBL:AY725312 EMBL:AY725313 EMBL:AY725314
EMBL:AY725315 EMBL:AY725316 EMBL:AY725317 EMBL:AY725318
EMBL:AY725319 EMBL:AY725320 EMBL:AY725321 EMBL:AY725322
EMBL:AY725323 EMBL:AY725324 EMBL:AY725325 EMBL:AY725326
EMBL:AY725327 EMBL:AY725328 EMBL:AY725329 EMBL:AY725330
EMBL:AY725331 EMBL:AY725332 EMBL:AY725333 PIR:H65220
RefSeq:NP_418537.1 RefSeq:YP_492256.1 ProteinModelPortal:P30843
SMR:P30843 DIP:DIP-9201N IntAct:P30843 PRIDE:P30843
EnsemblBacteria:EBESCT00000004571 EnsemblBacteria:EBESCT00000015954
GeneID:12934089 GeneID:948631 KEGG:ecj:Y75_p4000 KEGG:eco:b4113
PATRIC:32123791 EchoBASE:EB1572 EcoGene:EG11615 KO:K07771
OMA:GKATIRT ProtClustDB:PRK10643 BioCyc:EcoCyc:BASR-MONOMER
BioCyc:ECOL316407:JW4074-MONOMER Genevestigator:P30843
Uniprot:P30843
Length = 222
Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
Identities = 36/130 (27%), Positives = 62/130 (47%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
++IL+ ++D+ + Y SV + R +L E L++ ++ LP
Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSL--EAGHYSLVVLDLGLPDED 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL L I + K +PV++++A+D ++ + L +GA DYLVKP EL +
Sbjct: 59 GLHFLARIRQKK--YTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116
Query: 153 RRRRMLGLAE 162
RR G +E
Sbjct: 117 RRHNNQGESE 126
>TIGR_CMR|DET_1233 [details] [associations]
symbol:DET_1233 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_181946.1
ProteinModelPortal:Q3Z753 STRING:Q3Z753 GeneID:3229492
KEGG:det:DET1233 PATRIC:21609497 OMA:HVVEYAC
ProtClustDB:CLSK2767642 BioCyc:DETH243164:GJNF-1234-MONOMER
Uniprot:Q3Z753
Length = 222
Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 74 AEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133
A S+ DL++ ++ LP G+++ + + D + V+M++A+D + VK L GA D
Sbjct: 40 AANSEFDLLILDIGLPDKNGIEVCRKLRADGIVTS--VLMLTARDSLDSKVKGLDAGADD 97
Query: 134 YLVKPLRTNELLNLWTHMWRRR--RMLGLAEKNILSYD 169
YL KP +EL + RR R+L + E +S+D
Sbjct: 98 YLCKPFACDELFARIRALQRRPPLRVLPVVETAGISFD 135
>TIGR_CMR|CPS_0397 [details] [associations]
symbol:CPS_0397 "nitrogen regulation protein NR(I)"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006808 "regulation of
nitrogen utilization" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0009399 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K07712 GO:GO:0050906 TIGRFAMs:TIGR01818 RefSeq:YP_267155.1
ProteinModelPortal:Q489V9 SMR:Q489V9 STRING:Q489V9 GeneID:3520592
KEGG:cps:CPS_0397 PATRIC:21464159 OMA:KELAVEP
BioCyc:CPSY167879:GI48-492-MONOMER Uniprot:Q489V9
Length = 466
Score = 119 (46.9 bits), Expect = 0.00055, P = 0.00055
Identities = 29/114 (25%), Positives = 60/114 (52%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++ + D+DS+ + + + S ++ AL E ++I++++ +P G
Sbjct: 5 QVWIVDDDSSIRWVLEKAFANANISCAAFESAENLLIAL--EHGQPEIIISDIRMPNIDG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+++LK + +K+ IPVI+M+A ++ V + GA +YL KP +E +NL
Sbjct: 63 MELLKRL--NKQHSHIPVIIMTAHSDLDSAVNAYQGGAFEYLPKPFDIDEAINL 114
>TIGR_CMR|DET_0304 [details] [associations]
symbol:DET_0304 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181052.1
ProteinModelPortal:Q3Z9P7 GeneID:3230335 KEGG:det:DET0304
PATRIC:21607681 OMA:KMELIAR ProtClustDB:CLSK741611
BioCyc:DETH243164:GJNF-304-MONOMER Uniprot:Q3Z9P7
Length = 223
Score = 113 (44.8 bits), Expect = 0.00056, P = 0.00056
Identities = 35/137 (25%), Positives = 73/137 (53%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTK 92
RIL+ ++D ++DA S+ K ++ + + + + + E +I+ ++ LP
Sbjct: 3 RILIVEDDFKTADAFVSIF-KLTWPNAEIFTAQTGWEGIRLLEEYSPHIIILDIGLPDIN 61
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G +++ I + IP+++++A+ + VVK L LGA D++ KP R EL+ +
Sbjct: 62 GFEVISEI---RHFTDIPIMVITARTDELDVVKALELGANDFISKPPRKMELIARIKALI 118
Query: 153 RRRRMLGLAEKNILSYD 169
R++ + L+ NI ++D
Sbjct: 119 RKKSVDDLSFGNI-NFD 134
>TIGR_CMR|GSU_0451 [details] [associations]
symbol:GSU_0451 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
Length = 224
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00056
Identities = 32/113 (28%), Positives = 62/113 (54%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+++L+ +++ S + L + Y+V + + + + +G DLI+ +V LP
Sbjct: 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKG--YDLIVLDVMLPKKD 58
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
GL +++ + R+++ PV+M++A+D V +V L G+ DYL KP ELL
Sbjct: 59 GLSVVREL-RERK-NSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELL 109
>TIGR_CMR|BA_3661 [details] [associations]
symbol:BA_3661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845926.1 RefSeq:YP_020295.1 RefSeq:YP_029652.1
ProteinModelPortal:Q81Y94 DNASU:1085996
EnsemblBacteria:EBBACT00000012587 EnsemblBacteria:EBBACT00000017515
EnsemblBacteria:EBBACT00000021805 GeneID:1085996 GeneID:2816214
GeneID:2848549 KEGG:ban:BA_3661 KEGG:bar:GBAA_3661 KEGG:bat:BAS3396
OMA:ENTMSLA ProtClustDB:CLSK917123
BioCyc:BANT260799:GJAJ-3457-MONOMER
BioCyc:BANT261594:GJ7F-3567-MONOMER Uniprot:Q81Y94
Length = 225
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 33/134 (24%), Positives = 68/134 (50%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+LL +++ + V ++V ++ ++ L AE +IDLI+ ++ LP G
Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALE-LFAE-HEIDLIMLDIMLPEIDGW 62
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL-NLWTHMWR 153
+ + I ++ +P+IM++A+ + + LGA +Y+ KP L+ T + R
Sbjct: 63 SVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
Query: 154 RRRMLGLAEKNILS 167
++G+AE+N +S
Sbjct: 120 ADGVVGVAEENAMS 133
>TIGR_CMR|SPO_1624 [details] [associations]
symbol:SPO_1624 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_166865.1 ProteinModelPortal:Q5LSZ0 GeneID:3193367
KEGG:sil:SPO1624 PATRIC:23376571 OMA:FAVECAG Uniprot:Q5LSZ0
Length = 226
Score = 113 (44.8 bits), Expect = 0.00058, P = 0.00058
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
R+L+ ++D+ + + + + + V R+ + +A D ++ + LP G
Sbjct: 4 RVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGL--YHATDGGFDAMVLDRMLPGLDG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
L ++K + R L PVIM++A V VK LR GA DYLVKP ELL
Sbjct: 62 LALIKSV-RAAGLNT-PVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELL 111
>UNIPROTKB|Q9KSB0 [details] [associations]
symbol:VC_1349 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50894
SMART:SM00073 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
InterPro:IPR013656 Pfam:PF08448 PIR:H82211 RefSeq:NP_230993.1
ProteinModelPortal:Q9KSB0 DNASU:2614803 GeneID:2614803
KEGG:vch:VC1349 PATRIC:20081774 OMA:NDSARNI ProtClustDB:CLSK794089
Uniprot:Q9KSB0
Length = 1331
Score = 124 (48.7 bits), Expect = 0.00061, P = 0.00061
Identities = 28/116 (24%), Positives = 58/116 (50%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ DN+ N A+ LL V ++ ++ L E +D DL+L ++ +P+ G+
Sbjct: 995 LLVEDNEVNQEVAL-GLLQDTGLNVVVANHGQEALERL--EHADFDLVLMDMQMPVMDGI 1051
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
++I + +P++ M+A + +CL+ G D+L KP+ ++ + H
Sbjct: 1052 TATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRH 1107
>TIGR_CMR|VC_1349 [details] [associations]
symbol:VC_1349 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF01627
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
PROSITE:PS50113 PROSITE:PS50894 SMART:SM00073 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 PIR:H82211
RefSeq:NP_230993.1 ProteinModelPortal:Q9KSB0 DNASU:2614803
GeneID:2614803 KEGG:vch:VC1349 PATRIC:20081774 OMA:NDSARNI
ProtClustDB:CLSK794089 Uniprot:Q9KSB0
Length = 1331
Score = 124 (48.7 bits), Expect = 0.00061, P = 0.00061
Identities = 28/116 (24%), Positives = 58/116 (50%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ DN+ N A+ LL V ++ ++ L E +D DL+L ++ +P+ G+
Sbjct: 995 LLVEDNEVNQEVAL-GLLQDTGLNVVVANHGQEALERL--EHADFDLVLMDMQMPVMDGI 1051
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
++I + +P++ M+A + +CL+ G D+L KP+ ++ + H
Sbjct: 1052 TATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRH 1107
>TIGR_CMR|ECH_1012 [details] [associations]
symbol:ECH_1012 "DNA-binding response regulator"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_507798.1 ProteinModelPortal:Q2GFI5
STRING:Q2GFI5 GeneID:3927952 KEGG:ech:ECH_1012 PATRIC:20577398
OMA:GISEMDS ProtClustDB:CLSK749538
BioCyc:ECHA205920:GJNR-1015-MONOMER Uniprot:Q2GFI5
Length = 265
Score = 114 (45.2 bits), Expect = 0.00069, P = 0.00069
Identities = 35/125 (28%), Positives = 64/125 (51%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-MT 91
+RILL ++D + AV + L + ++ S + ++ + D D+++ ++ P
Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G +L + R+ + ++PV+++S VS VK L GA DY+ KP +ELL +
Sbjct: 61 DGYDILVKL-RESGI-KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAI 118
Query: 152 WRRRR 156
RR R
Sbjct: 119 VRRTR 123
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 95 (38.5 bits), Expect = 0.00070, P = 0.00070
Identities = 29/123 (23%), Positives = 56/123 (45%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALN-AEGSDIDLILAEVDLPMTK 92
++L+ +++ + LL Y+ R + + AL+ A + DLIL ++ LP
Sbjct: 4 KVLIVEDNELNMKLFHDLLEAQGYETLQTR---EGLSALSIARENKPDLILMDIQLPEIS 60
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL++ K++ D +L IPV+ ++A + G Y+ KP+ L +
Sbjct: 61 GLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 120
Query: 153 RRR 155
R+
Sbjct: 121 ERQ 123
>TIGR_CMR|DET_0300 [details] [associations]
symbol:DET_0300 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181048.1
ProteinModelPortal:Q3Z9Q1 STRING:Q3Z9Q1 GeneID:3230339
KEGG:det:DET0300 PATRIC:21607673 OMA:GIKYGHW ProtClustDB:CLSK837537
BioCyc:DETH243164:GJNF-300-MONOMER Uniprot:Q3Z9Q1
Length = 225
Score = 112 (44.5 bits), Expect = 0.00076, P = 0.00076
Identities = 29/116 (25%), Positives = 62/116 (53%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSY---QVTSVRSPRQVIDALNAEGSDIDLILAEVDLP 89
+++L ++D ++VF LL K + + +V + I+A+ + D D+ + ++ LP
Sbjct: 1 MKLLFIEDDKKIVESVF-LLFKSFWPDMETKAVHLGKTGIEAVYKD--DFDIAIIDLGLP 57
Query: 90 MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
G+ +LK I + +P+++++A++ + LGA DY+ KP + EL+
Sbjct: 58 DIDGINVLKQI---RAFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELI 110
>TIGR_CMR|APH_1099 [details] [associations]
symbol:APH_1099 "DNA-binding response regulator"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 ProtClustDB:CLSK749538 RefSeq:YP_505647.1
ProteinModelPortal:Q2GJ04 STRING:Q2GJ04 GeneID:3930636
KEGG:aph:APH_1099 PATRIC:20950956 OMA:ETMASAQ
BioCyc:APHA212042:GHPM-1105-MONOMER Uniprot:Q2GJ04
Length = 276
Score = 114 (45.2 bits), Expect = 0.00076, P = 0.00076
Identities = 35/125 (28%), Positives = 64/125 (51%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-MT 91
+RILL ++D + AV + L + ++ S + ++ + D D+++ ++ P
Sbjct: 1 MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G +L + R+ + R+PV+++S V+ VK L GA DY+ KP +ELL +
Sbjct: 61 DGYDILVKL-RESGI-RVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAV 118
Query: 152 WRRRR 156
RR R
Sbjct: 119 VRRTR 123
>TIGR_CMR|CPS_4418 [details] [associations]
symbol:CPS_4418 "sigma-54 dependent DNA-binding response
regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 PROSITE:PS00676
RefSeq:YP_271067.1 ProteinModelPortal:Q47VV5 STRING:Q47VV5
GeneID:3519684 KEGG:cps:CPS_4418 PATRIC:21471677 OMA:CESIMES
BioCyc:CPSY167879:GI48-4427-MONOMER Uniprot:Q47VV5
Length = 450
Score = 119 (46.9 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 33/112 (29%), Positives = 58/112 (51%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ D+D + A+ LL YQ+ + +++I N + D+ L+ T G
Sbjct: 6 ILIADDDEDIRLALNLLLSAQGYQIIEAANAKEIIIESNRQQPDLVLLDMNFSRDTTSGQ 65
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+ L + + + L IPVI+M+A + + V+ L+ GA D++ KP +LLN
Sbjct: 66 EGLAILEQLQPLN-IPVILMTAWGSIELAVEGLQKGANDFIEKPWNKLKLLN 116
Score = 41 (19.5 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 420 LPQCVPHVNGMASFPYYPINMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRREAA 474
L + + ++ P +NM P + + + T+ K N+V R + A
Sbjct: 183 LAERIHQLSSRQQAPLIAVNMAAIPDNLFESELFGHQKGAFTDAKQNRVGRFQLA 237
>TAIR|locus:2164718 [details] [associations]
symbol:BBX8 "B-box domain protein 8" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005886 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB023039 EMBL:AY039957 EMBL:AY142607
IPI:IPI00527282 RefSeq:NP_199636.1 UniGene:At.7080
ProteinModelPortal:Q9LUA9 IntAct:Q9LUA9 STRING:Q9LUA9
EnsemblPlants:AT5G48250.1 GeneID:834878 KEGG:ath:AT5G48250
TAIR:At5g48250 eggNOG:NOG248444 HOGENOM:HOG000116529
InParanoid:Q9LUA9 OMA:ESACEQG PhylomeDB:Q9LUA9
ProtClustDB:CLSN2684850 Genevestigator:Q9LUA9 GermOnline:AT5G48250
Uniprot:Q9LUA9
Length = 373
Score = 116 (45.9 bits), Expect = 0.00083, P = 0.00082
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVD 520
R A++++++K+K R FDK++RYV+RK A+ R RV+G+FV+ + D
Sbjct: 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYD 365
>TAIR|locus:2091082 [details] [associations]
symbol:COL9 "CONSTANS-like 9" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0007623 GO:GO:0008270 GO:GO:0003700
EMBL:AC009176 eggNOG:NOG248444 HOGENOM:HOG000116529
ProtClustDB:CLSN2684850 EMBL:AY049290 IPI:IPI00522412
RefSeq:NP_001030659.1 RefSeq:NP_001118599.1 RefSeq:NP_187422.1
RefSeq:NP_974250.1 UniGene:At.18337 STRING:Q9SSE5 PRIDE:Q9SSE5
EnsemblPlants:AT3G07650.1 EnsemblPlants:AT3G07650.2
EnsemblPlants:AT3G07650.3 EnsemblPlants:AT3G07650.4 GeneID:819956
KEGG:ath:AT3G07650 TAIR:At3g07650 InParanoid:Q9SSE5 OMA:TSHIQTE
PhylomeDB:Q9SSE5 Genevestigator:Q9SSE5 GermOnline:AT3G07650
GO:GO:0048579 Uniprot:Q9SSE5
Length = 372
Score = 110 (43.8 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 20/50 (40%), Positives = 35/50 (70%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVD 520
R A++++++K+K R FDK++RY +RK A+ R RV+G+FV+ + D
Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364
Score = 48 (22.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 243 DVPGISDRRTAGPKKIELRIGESSAFFTYVKSNMP--RDSSPRIVNV-DDSAAQNVRMEE 299
D G +D++T K ++ +G SS T S++P + SS + V + +D N+ M+E
Sbjct: 137 DDDGPTDKKTCNEDKKDVLVGSSSIPET---SSVPQGKSSSAKDVGMCEDDFYGNLGMDE 193
>TIGR_CMR|SPO_2087 [details] [associations]
symbol:SPO_2087 "nitrogen regulation protein NtrC"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0009399
"nitrogen fixation" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 KO:K07712 RefSeq:YP_167317.1
ProteinModelPortal:Q5LRN8 DNASU:3195357 GeneID:3195357
KEGG:sil:SPO2087 PATRIC:23377515 OMA:YEEAGSA ProtClustDB:CLSK933754
Uniprot:Q5LRN8
Length = 457
Score = 117 (46.2 bits), Expect = 0.00089, P = 0.00089
Identities = 32/122 (26%), Positives = 62/122 (50%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ D+D + L + +V + S ++ + AEG D+++++V +P GL
Sbjct: 5 VLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWV-AEGKG-DVVISDVVMPDGNGL 62
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154
+ML I +D+ +PVI++SAQ+ + ++ A DYL KP +L+ +
Sbjct: 63 EMLPKIAQDRP--GLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTARALEQ 120
Query: 155 RR 156
+R
Sbjct: 121 KR 122
>TIGR_CMR|GSU_2753 [details] [associations]
symbol:GSU_2753 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 PROSITE:PS50931
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025662
InterPro:IPR025943 PROSITE:PS00675 PROSITE:PS00676
HOGENOM:HOG000058487 RefSeq:NP_953798.1 ProteinModelPortal:Q749I9
GeneID:2685961 KEGG:gsu:GSU2753 PATRIC:22028347 OMA:KERAGMF
ProtClustDB:CLSK924633 BioCyc:GSUL243231:GH27-2744-MONOMER
Uniprot:Q749I9
Length = 468
Score = 117 (46.2 bits), Expect = 0.00093, P = 0.00093
Identities = 43/133 (32%), Positives = 71/133 (53%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMT 91
ILL D++ ++ SL ++ S +T+ + R V AL EG I L+L ++ +P
Sbjct: 11 ILLVDDEPAWLRSL-SLTLESSAGITNTILCQDSRDV-PAL-LEGGGIGLVLLDLTMPHL 67
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G ++L I+ + + VI++S ++V V+C++LGA DY VK T+E L +
Sbjct: 68 SGEELLATIS--ERHPEVAVIVISGLNQVETAVRCMKLGAFDYFVK---TDEEDRLVGGV 122
Query: 152 WRRRRMLGLAEKN 164
R RML L +N
Sbjct: 123 LRAVRMLELQREN 135
>TIGR_CMR|CPS_2473 [details] [associations]
symbol:CPS_2473 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_269189.1 ProteinModelPortal:Q481T0
STRING:Q481T0 GeneID:3519581 KEGG:cps:CPS_2473 PATRIC:21468015
ProtClustDB:CLSK869033 BioCyc:CPSY167879:GI48-2536-MONOMER
Uniprot:Q481T0
Length = 242
Score = 112 (44.5 bits), Expect = 0.00093, P = 0.00093
Identities = 39/146 (26%), Positives = 72/146 (49%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S +IL+ D+D + + S Y V+ + + + L G+ +DLIL ++ +P
Sbjct: 3 SDTKILIVDDDELTRQVLSSYFENEGYDVSCATTAEEAEELLIL-GT-VDLILLDIRMPG 60
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
GL + + + + E+ I ++ +QDEV ++ L GA +Y+ KP E+L +
Sbjct: 61 KDGLTLTRELRVNNEVGII--LVTGSQDEVDRLIG-LECGADEYVTKPFNPREILARAKN 117
Query: 151 MWRRRRMLGLAEKNILSYDFDLVASD 176
+ RR R+ K+ + D+ L A D
Sbjct: 118 LIRRVRLCQKV-KSADNDDYILKAFD 142
>UNIPROTKB|Q9KQ67 [details] [associations]
symbol:VC_2135 "Sigma-54 dependent response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/114 (22%), Positives = 55/114 (48%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++L+ ++D +A+ L Y+ + L + +D+++++V + G
Sbjct: 7 KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDAL--LKLKSHSVDIVVSDVQMAGMGG 64
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
L +L+ I + +PV++M+A + V ++ GA DY+ KP LLN+
Sbjct: 65 LALLRSIKQ--HWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNM 116
>TIGR_CMR|VC_2135 [details] [associations]
symbol:VC_2135 "flagellar regulatory protein C" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0030092 "regulation of
flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/114 (22%), Positives = 55/114 (48%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++L+ ++D +A+ L Y+ + L + +D+++++V + G
Sbjct: 7 KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDAL--LKLKSHSVDIVVSDVQMAGMGG 64
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
L +L+ I + +PV++M+A + V ++ GA DY+ KP LLN+
Sbjct: 65 LALLRSIKQ--HWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNM 116
WARNING: HSPs involving 1 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 554 498 0.00084 119 3 11 22 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 251
No. of states in DFA: 614 (65 KB)
Total size of DFA: 299 KB (2154 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.36u 0.07s 45.43t Elapsed: 00:00:22
Total cpu time: 45.39u 0.08s 45.47t Elapsed: 00:00:22
Start: Fri May 10 20:01:29 2013 End: Fri May 10 20:01:51 2013
WARNINGS ISSUED: 2