BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008761
(554 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana
GN=APRR1 PE=1 SV=1
Length = 618
Score = 555 bits (1430), Expect = e-157, Method: Compositional matrix adjust.
Identities = 331/644 (51%), Positives = 395/644 (61%), Gaps = 123/644 (19%)
Query: 6 MNLNKECSGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSP 65
M+LN EC G GDGFIDRS+VRILLCDNDS S VF+LL +CSYQVT+V+S
Sbjct: 1 MDLNGECKG---------GDGFIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSA 51
Query: 66 RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125
RQVIDALNAEG DID+ILAE+DLPM KG+KML+YITRDK+L+RIPVIMMS QDEV VVVK
Sbjct: 52 RQVIDALNAEGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVK 111
Query: 126 CLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNST 185
CL+LGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKN+LSYDFDLV SD SD NTNST
Sbjct: 112 CLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLSYDFDLVGSDQSDPNTNST 171
Query: 186 TLFSDDTDDKSRRSTNPEIGMSTHQETE----SVPV--------ATATVVASTSGTAAVE 233
LFSDDTDD+S RSTNP+ G +HQE E + PV A T +S + TA
Sbjct: 172 NLFSDDTDDRSLRSTNPQRGNLSHQENEWSVATAPVHARDGGLGADGTATSSLAVTAIEP 231
Query: 234 PIDASECGPDVPGISDRRTA----GPKKIELRIGESSAFFTYVKSNMPRDSS-------- 281
P+D P + A PKK L+IGESSAFFTYVKS + R +
Sbjct: 232 PLDHLAGSHHEPMKRNSNPAQFSSAPKKSRLKIGESSAFFTYVKSTVLRTNGQDPPLVDG 291
Query: 282 --------------------------------------------PRIVNVDDSAAQNVRM 297
P +VN + S +
Sbjct: 292 NGSLHLHRGLAEKFQVVASEGINNTKQARRATPKSTVLRTNGQDPPLVNGNGSHHLHRGA 351
Query: 298 EEKCQPCCQQVVSDTRIHENGEAWENY-SQGEDFRSSSSVPDSLSMERSSTPPTDF-PQN 355
EK Q + +++T+ E Y SQGE ++ +S P SL ERS T PT
Sbjct: 352 AEKFQVVASEGINNTKQAHRSRGTEQYHSQGETLQNGASYPHSL--ERSRTLPTSMESHG 409
Query: 356 RNFKDEKFFQPQMPPTRNE-----------PPQATYQYYMSGAMNQVMLPSSSAQMYQKN 404
RN+++ PQ+ R++ P A Y YYM G MNQVM+ S+
Sbjct: 410 RNYQEGNMNIPQVAMNRSKDSSQVDGSGFSAPNA-YPYYMHGVMNQVMMQSA-------- 460
Query: 405 LHELQNHSMLPQYNH-LPQCVP-HVNGMASFPYY--PIN-------MCLQPGQVSA--NS 451
+M+PQY H +P C P H NGM +PYY P+N M LQ GQ+S +S
Sbjct: 461 -------AMMPQYGHQIPHCQPNHPNGMTGYPYYHHPMNTSLQHSQMSLQNGQMSMVHHS 513
Query: 452 WPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFV 511
W GN PS EV++NK+DRRE AL+KFR+KR +RCFDKKIRYVNRKRLAERRPRV+GQFV
Sbjct: 514 WSPAGNPPSNEVRVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFV 573
Query: 512 RKVNGVNVDLNGQPSSVDYDE--DEDEEEEMASRDSSPDNDTSG 553
RK+NGVNVDLNGQP S DYD+ +E+EEEE +RDSSP +D G
Sbjct: 574 RKMNGVNVDLNGQPDSADYDDEEEEEEEEEEENRDSSPQDDALG 617
>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp.
japonica GN=PRR1 PE=2 SV=2
Length = 518
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 236/513 (46%), Positives = 301/513 (58%), Gaps = 55/513 (10%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
F+DRSKVRILLCD+D +SS V LL CSYQVT +SPRQVI+ LN E +ID+ILAEV
Sbjct: 22 FVDRSKVRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEV 81
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
DLP++K KMLKYI R+KEL+ IP+IMMS +DEVSVVVKCLRLGAA+YLVKPLR NELLN
Sbjct: 82 DLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLN 141
Query: 147 LWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGM 206
LWTH+WRRRRMLGL+EKN + +F+L S+PSDANTNSTTL SDDTDDK + + N E
Sbjct: 142 LWTHVWRRRRMLGLSEKNFFNDNFELALSEPSDANTNSTTLLSDDTDDKPKENINQETST 201
Query: 207 STHQETESVPVATATVVASTSGTAAVEPIDASECGPD---VPGISDRRTAGPKKIELRIG 263
S E ES P A E + S G D PG+ R P K LR+
Sbjct: 202 SNQHEYESNPSD-----AEPKQKGTPEGLLVSTEGGDQASSPGVMFSR---PIKTNLRVA 253
Query: 264 ESSAFFTYVKSNMPRDSSPRIVNVDDSAAQNVRMEEKCQPCCQQVVSDTRIHENGEAWEN 323
ESSAF YVKS+ P SS D+ + + G ++
Sbjct: 254 ESSAFLAYVKSSTPTTSS----------------------------FDSELQKGGNRLDS 285
Query: 324 YSQGEDFRSSSSVPDS-----LSMERSSTPPTDFP----QNRNFKDEKFFQPQMPPTRNE 374
+F S++ D+ + + + P +P + N E+ + Q +
Sbjct: 286 SDHRGNFSSTTDRSDTGTDVNIRDKEAFEMPVQYPVVCFSSSNLHLERSNEGQNDAS-GT 344
Query: 375 PPQATYQYYMSGAMNQVMLPSSSAQMYQKNLHELQNH---SMLPQYNHLPQCVPHVNGMA 431
PP + +Y G M+ M Q +Q N++ Q H ++LPQYN PQC V+ M
Sbjct: 345 PPVYHFPFYYPGMMDHGMT-HPPVQNFQGNINNAQVHTPQTLLPQYNVYPQC-HGVSMMP 402
Query: 432 SFPYYPINMCLQPGQV-SANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKK 490
F Y P M +Q Q+ + N WP ++P E ++ +RR AAL KFR KRKERCFDKK
Sbjct: 403 PFQYNPAGMSIQSNQLPTQNMWPQASSTPMPEETCSRSERRAAALAKFRLKRKERCFDKK 462
Query: 491 IRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNG 523
+RYVNRK+LAE RPRVRGQFVR+ N ++ G
Sbjct: 463 VRYVNRKKLAETRPRVRGQFVRQANYTDITSTG 495
>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana
GN=APRR5 PE=1 SV=2
Length = 558
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
F+ + +R+LL + D ++ + +LL KCSY+V +V + + L + +DLIL EV
Sbjct: 44 FLPKIALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEV 103
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
DLP G +L I + IPVIMMS QD V+ V KC+ GAADYLVKPLR NEL N
Sbjct: 104 DLPSISGYALLTLIMEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRN 163
Query: 147 LWTHMWRRRRMLG 159
LW H+WRR+ L
Sbjct: 164 LWQHVWRRQTSLA 176
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 45/51 (88%)
Query: 464 KMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 514
K+ + +REAAL KFR KRK+RC++KK+RY +RK+LAE+RPR++GQFVR+V
Sbjct: 502 KIQQSLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQV 552
>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana
GN=APRR9 PE=2 SV=2
Length = 468
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 85/130 (65%)
Query: 25 DGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84
+ ++ ++ +R+LL ++D ++ + +LL KC Y+V +V + L + +IDLIL
Sbjct: 29 EKYLPKTVLRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILT 88
Query: 85 EVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
E+DLP G +L + + + IPVIMMS+QD + +V+KC+ GAADYL+KP+R NEL
Sbjct: 89 ELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNEL 148
Query: 145 LNLWTHMWRR 154
NLW H+WRR
Sbjct: 149 KNLWQHVWRR 158
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 43/46 (93%)
Query: 470 RREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 515
+REAAL+KFR KRK+RCFDKK+RY +RK+LAE+RPRV+GQFVR VN
Sbjct: 416 QREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVN 461
>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana
GN=APRR3 PE=1 SV=1
Length = 495
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+++LL +ND ++ V +LL CSY+VT+V + L E S IDL+L EVD+P+
Sbjct: 64 LKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHS 123
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G +L I K L+ IPVIMMS+ D + +V KCL GA D+LVKP+R NEL NLW H+W
Sbjct: 124 GTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHVW 183
Query: 153 RR 154
RR
Sbjct: 184 RR 185
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 41/44 (93%)
Query: 470 RREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 513
+REAAL+KFR KRKERCF+KK+RY +RK+LAE+RP V+GQF+RK
Sbjct: 441 QREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK 484
>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp.
japonica GN=PRR95 PE=2 SV=1
Length = 623
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 83/134 (61%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
+ R VR+LL + D ++ + +LL KC Y+V + + D L + +IDL+L EV
Sbjct: 37 MLPRMPVRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEV 96
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+LP+ G +L I + IPVIMMS+ D VS+V KC+ GAAD+LVKP+R NEL N
Sbjct: 97 ELPLMSGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRN 156
Query: 147 LWTHMWRRRRMLGL 160
LW H+WR++ G+
Sbjct: 157 LWQHVWRKQLSSGV 170
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 45/53 (84%)
Query: 465 MNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGV 517
+ + +REAAL KFR KRK+RCF+KK+RY +RK LAE+RPRV+GQFVR+ +GV
Sbjct: 568 LRHLSQREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQDHGV 620
>sp|Q10N34|PRR73_ORYSJ Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
japonica GN=PRR73 PE=2 SV=1
Length = 767
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 76/128 (59%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
F+ +R+LL +ND ++ V +LL KC Y+V + L + IDL+L EV
Sbjct: 75 FLPVKTLRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEV 134
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+P G+ +L IT K + IPVIMMS+ D + V KCL GA D+LVKP+R NEL N
Sbjct: 135 VMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKN 194
Query: 147 LWTHMWRR 154
LW H+WRR
Sbjct: 195 LWQHVWRR 202
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 46/68 (67%), Gaps = 8/68 (11%)
Query: 466 NKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQP 525
N V REAAL KFRQKRK R F KK+RY +RKRLAE+RPR+RGQFVR+ +GQ
Sbjct: 707 NGVCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQ--------SGQE 758
Query: 526 SSVDYDED 533
DED
Sbjct: 759 DQAGQDED 766
>sp|A2XFB7|PRR73_ORYSI Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
indica GN=PRR73 PE=2 SV=2
Length = 767
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 76/128 (59%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
F+ +R+LL +ND ++ V +LL KC Y+V + L + IDL+L EV
Sbjct: 75 FLPVKTLRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEV 134
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+P G+ +L IT K + IPVIMMS+ D + V KCL GA D+LVKP+R NEL N
Sbjct: 135 VMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKN 194
Query: 147 LWTHMWRR 154
LW H+WRR
Sbjct: 195 LWQHVWRR 202
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 46/68 (67%), Gaps = 8/68 (11%)
Query: 466 NKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQP 525
N V REAAL KFRQKRK R F KK+RY +RKRLAE+RPR+RGQFVR+ +GQ
Sbjct: 707 NGVCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQ--------SGQE 758
Query: 526 SSVDYDED 533
DED
Sbjct: 759 DQAGQDED 766
>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
japonica GN=PRR37 PE=2 SV=1
Length = 742
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
FI + +++LL D+D ++ V +LL C Y+V + +Q L + IDL+L EV
Sbjct: 56 FIQKKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEV 115
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+P G+ +L I + IPVIMMS+ D + V KCL GA D+LVKP+R NEL N
Sbjct: 116 VMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKN 175
Query: 147 LWTHMWRR 154
LW H+WRR
Sbjct: 176 LWQHVWRR 183
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 40/46 (86%)
Query: 469 DRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 514
+ R AA+IKFRQKRKER F KK+RY +RKRLAE+RPRVRGQFVR+
Sbjct: 680 EHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQA 725
>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
indica GN=PRR37 PE=2 SV=2
Length = 742
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
FI + +++LL D+D ++ V +LL C Y+V + +Q L + IDL+L EV
Sbjct: 56 FIQKKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEV 115
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+P G+ +L I + IPVIMMS+ D + V KCL GA D+LVKP+R NEL N
Sbjct: 116 VMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKN 175
Query: 147 LWTHMWRR 154
LW H+WRR
Sbjct: 176 LWQHVWRR 183
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 40/46 (86%)
Query: 469 DRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 514
+ R AA+IKFRQKRKER F KK+RY +RKRLAE+RPRVRGQFVR+
Sbjct: 680 EHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQA 725
>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana
GN=APRR7 PE=2 SV=1
Length = 727
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
F+ +R+LL +ND + V +LL CSY+V + Q L + ID++L EV
Sbjct: 72 FLHVRTIRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEV 131
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+P G+ +L I K + IPVIMMS+ D + +V KCL GA D+LVKP+R NEL
Sbjct: 132 IMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKI 191
Query: 147 LWTHMWRR 154
LW H+WRR
Sbjct: 192 LWQHVWRR 199
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 44/49 (89%)
Query: 466 NKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 514
NK+ +REAAL KFRQKRKERCF KK+RY +RK+LAE+RPRVRGQFVRK
Sbjct: 664 NKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKT 712
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 7/144 (4%)
Query: 13 SGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDAL 72
SG G S S D F + +R+L+ D+D + +L+ C Y+VT + L
Sbjct: 12 SGTAAGGSNS--DPF--PANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLL 67
Query: 73 NAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132
+ D+++++V +P G K+L+++ + +L PVIMMSA D SVV+K + GA
Sbjct: 68 RKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAV 124
Query: 133 DYLVKPLRTNELLNLWTHMWRRRR 156
DYL+KP+R L N+W H+ R++R
Sbjct: 125 DYLIKPVRIEALKNIWQHVVRKKR 148
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S +R+L+ D+D + +L C Y+VT + L D+++++V +P
Sbjct: 35 SGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPD 94
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G K+L+++ + +L PVIMMSA D SVV+K + GA DYL+KP+R L N+W H
Sbjct: 95 MDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQH 151
Query: 151 MWRRRR 156
+ R+RR
Sbjct: 152 VVRKRR 157
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L D+D + SLL C Y VT+ ++ ++ L + DL++++VD+P
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMD 76
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G K+L+ + + +L PVIM+SA + V+K + GA DYL+KP+R EL N+W H+
Sbjct: 77 GFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVV 133
Query: 153 RRR 155
R R
Sbjct: 134 RSR 136
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L D+D + +LL +C Y VT+ + ++ L + DL++++VD+P
Sbjct: 17 MRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMD 76
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G K+L+ + + +L PVIM+SA + V+K ++ GA DYL+KP+R EL N+W H+
Sbjct: 77 GFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVV 133
Query: 153 R 153
R
Sbjct: 134 R 134
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ D+D + +L KCSY+VT+ R+ + L D+++++V++P
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMD 70
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G K+L+++ + +L PVIMMS E S V+K ++ GA DYL+KP+R EL +W H+
Sbjct: 71 GFKLLEHVGLELDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 153 RRR 155
R++
Sbjct: 128 RKK 130
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 76/123 (61%), Gaps = 3/123 (2%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ D+D + + LL+KCSY+VT+ ++ R+ + + +DL++++ P
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL +L+ +T IP ++M++ + + V+K + GA D+L+KP+R EL N+W H++
Sbjct: 71 GLLILQEVTSKFG---IPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 153 RRR 155
R++
Sbjct: 128 RKQ 130
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 76/123 (61%), Gaps = 3/123 (2%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ D+D + + LL+KCSY+VT+ ++ R+ + + +DL++++ P
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
GL +L+ +T IP ++M++ + + V+K + GA D+L+KP+R EL N+W H++
Sbjct: 71 GLLILQEVTSKFG---IPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 153 RRR 155
R++
Sbjct: 128 RKQ 130
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 22 SSGDGFIDRSKV--RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDI 79
S+ DG D+ V R+L D++ + LL++C Y VT R+ ++ L +
Sbjct: 5 STEDGRHDKFPVGMRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMF 64
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
DL++++V++P T G K+L+ I + +L PVIM+SA + V+K + GA DYLVKP+
Sbjct: 65 DLVISDVEMPDTDGFKLLE-IGLEMDL---PVIMLSAHSDYDSVMKGIIHGACDYLVKPV 120
Query: 140 RTNELLNLWTHMWRRRRMLGLAEKNILSY 168
EL N+W H + +KNI SY
Sbjct: 121 GLKELQNIWHH---------VVKKNIKSY 140
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 6/129 (4%)
Query: 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86
F+ +S R+LL DSNSS + +L+ + SYQVT S + + L +IDL++ +
Sbjct: 36 FLTKSN-RVLLVGADSNSS--LKNLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIWDF 92
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+P GL L I + +L PV++MS + + V++ ++ GA D+LVKP+ +
Sbjct: 93 HMPDINGLDALNIIGKQMDL---PVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAV 149
Query: 147 LWTHMWRRR 155
LW H++R+R
Sbjct: 150 LWRHVYRKR 158
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S +RIL+ D+D++ + +L++ YQVT + L DL+L++V +P
Sbjct: 9 SGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPG 68
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G +L+ + + +PVIMMS + V+ + GA DYL+KP+R EL N+W H
Sbjct: 69 MNGYNLLQQVGLLE--MDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQH 126
Query: 151 MWRRR 155
+ RR+
Sbjct: 127 VVRRK 131
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ D + + + ++ + +YQV+ + + L + +I++++ + +P GL
Sbjct: 36 VLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHEINIVIWDFHMPGIDGL 95
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154
+ LK IT +L PV++MS ++ V+K GA DY+VKP++ + N+W H+ R+
Sbjct: 96 QALKSITSKLDL---PVVIMSDDNQTESVMKATFYGACDYVVKPVKEEVMANIWQHIVRK 152
Query: 155 RRML 158
R +
Sbjct: 153 RLIF 156
>sp|Q23917|PDE2_DICDI 3',5'-cyclic-nucleotide phosphodiesterase regA OS=Dictyostelium
discoideum GN=regA PE=1 SV=1
Length = 793
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
SKVRIL+ D+D + +LL K Y VT V + + +N DL+L +V +P
Sbjct: 158 SKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPH 217
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNELL---- 145
G +L+ I + IPVI+MS + +++G D+L KP+ ELL
Sbjct: 218 ITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPI-AKELLKKKI 276
Query: 146 -NLWTHMWRRRR 156
+ +W+RR+
Sbjct: 277 DTVLQSIWQRRK 288
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 22 SSGDGFIDRS---KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSD 78
+S F ++S K+ +++ D+D D + +L Y+V +V P++ + L + +
Sbjct: 2 ASAQSFYNQSSVLKINVMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKALSTLKIQRDN 61
Query: 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
IDLI+ + +P GL++ K IT +E +PV++MS+ + + + L GA ++ KP
Sbjct: 62 IDLIITDYYMPGMNGLQLKKQIT--QEFGNLPVLVMSS--DTNKEEESLSCGAMGFIPKP 117
Query: 139 LRTNELLNLWTHMWRRRR 156
+ +L ++ +R
Sbjct: 118 IHPTDLTKIYQFALSNKR 135
>sp|O82798|ARR4_ARATH Two-component response regulator ARR4 OS=Arabidopsis thaliana
GN=ARR4 PE=1 SV=1
Length = 259
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 13 SGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDAL 72
S GIG +S+ +D +V +L D+ + LL S +VT+V S + ++ L
Sbjct: 17 SVGGIGGIESAP---LDLDEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFL 73
Query: 73 NAEGSD---------IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV 123
+ +DLI+ + +P G ++LK I + +PV++MS+++ ++ +
Sbjct: 74 GLDNEKASAEFDRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRI 133
Query: 124 VKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+CL GA D+L+KP++ ++ L +H+ +
Sbjct: 134 DRCLEEGAQDFLLKPVKLADVKRLRSHLTK 163
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 18 GNSKSSGDGFIDRSKVRILL--CDNDSNSSDA--VFSLLVKCSYQVTSVRSPRQVIDALN 73
N S + F KV +LL CD+D + S A S L Y VT+ + + A+
Sbjct: 5 ANDLSKWENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVV 64
Query: 74 AEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133
+ + EV+ M+ + K++ K++ +P IM+S ++ +KC+ LGA +
Sbjct: 65 KNPESFHIAIVEVN--MSAESESFKFLEAAKDV--LPTIMISTDHCITTTMKCIALGAVE 120
Query: 134 YLVKPLRTNELLNLWTHM 151
+L KPL +L N+W H+
Sbjct: 121 FLQKPLSPEKLKNIWQHV 138
>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5
PE=2 SV=2
Length = 355
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDL 521
REA ++++R+KRK R F+K IRY +RK AE RPR++G+F ++ N D+
Sbjct: 285 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDI 335
>sp|Q9ZWS9|ARR3_ARATH Two-component response regulator ARR3 OS=Arabidopsis thaliana
GN=ARR3 PE=2 SV=1
Length = 231
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 11 ECSGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVID 70
E G GIG +S +D +V +L D+ + LL S +VT+V S + ++
Sbjct: 14 EMIGIGIGELESPP---LDSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALE 70
Query: 71 ALNAEGSD---------IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVS 121
L + +DLI+ + +P G ++LK I + +PV++MS+++ ++
Sbjct: 71 FLGLDDDKAAVEFDRLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMT 130
Query: 122 VVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+ +CL GA D+L+KP++ ++ L +++ R
Sbjct: 131 RIDRCLEEGAEDFLLKPVKLADVKRLRSYLTR 162
>sp|O80366|ARR9_ARATH Two-component response regulator ARR9 OS=Arabidopsis thaliana
GN=ARR9 PE=1 SV=1
Length = 234
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 19/149 (12%)
Query: 26 GFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDAL------------- 72
G S+ +L D+ + LL K S QVT+V S + ++ L
Sbjct: 2 GMAAESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNA 61
Query: 73 ------NAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKC 126
N + +++LI+ + +P G +LK + + IPV++MS+++ + + +C
Sbjct: 62 FSKAPVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRC 121
Query: 127 LRLGAADYLVKPLRTNELLNLWTHMWRRR 155
L GA ++ +KP+R +L L HM + +
Sbjct: 122 LEEGAEEFFLKPVRLADLNKLKPHMMKTK 150
>sp|Q1XDE4|YCF29_PORYE Probable transcriptional regulator ycf29 OS=Porphyra yezoensis
GN=ycf29 PE=3 SV=1
Length = 222
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALN-AEGSDIDLILAEVDLPMTK 92
+++L +ND S A+ L+ + V + ++ALN A + DLI++++ +P+
Sbjct: 4 KLMLVENDIVLSKAIQEYLIDQGFNVYIANNG---LEALNLAYQYNFDLIISDIMMPLVN 60
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
G ++L + ++K L +IPVI ++A+ +K +G YL KP NELL++ ++
Sbjct: 61 GYELLAKLKKNKALSKIPVIFLTAKGMTKDRIKGYDMGCYGYLSKPFDPNELLSIINNLI 120
Query: 153 RR 154
R
Sbjct: 121 AR 122
>sp|O80365|ARR8_ARATH Two-component response regulator ARR8 OS=Arabidopsis thaliana
GN=ARR8 PE=1 SV=1
Length = 225
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSD------------ 78
SK +L D+ + LL K S QVT+V S + ++ L D
Sbjct: 7 SKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQI 66
Query: 79 -----IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133
I+LI+ + +P G +LK + + IPV++MS+++ + + +CL GA +
Sbjct: 67 HQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEE 126
Query: 134 YLVKPLRTNELLNLWTHMWRRR 155
+ +KP++ +L L HM + +
Sbjct: 127 FFLKPVKLADLTKLKPHMMKTK 148
>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4
PE=2 SV=2
Length = 362
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
Query: 445 GQVSANSWP-----SYGNSPSTE--VKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRK 497
G V+ S+P + G P T+ V + +R EA ++++R+KRK R F+K IRY +RK
Sbjct: 263 GSVADVSYPYGGPATSGADPGTQRAVPLTSAER-EARVMRYREKRKNRKFEKTIRYASRK 321
Query: 498 RLAERRPRVRGQFVRKVN 515
AE RPR++G+F ++ +
Sbjct: 322 AYAEMRPRIKGRFAKRTD 339
>sp|Q06239|VANR_ENTFC Regulatory protein VanR OS=Enterococcus faecium GN=vanR PE=3 SV=1
Length = 231
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D++ +D V L +Y V + ++ ++ ++ S+IDL + ++ LP T G
Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDK--SEIDLAILDIMLPGTSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL-NLWTHMW 152
L + + I RDK P+IM++ +D + L +GA DY+ KP R EL+ + +
Sbjct: 62 LTICQKI-RDK--HTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLR 118
Query: 153 RRRRMLGLAEKN 164
R ++ G+ E+N
Sbjct: 119 RYKKFSGVKEQN 130
>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1
PE=1 SV=1
Length = 355
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 513
REA ++++R+K+K R F+K IRY +RK AE+RPR++G+F +K
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKK 328
>sp|Q9LU68|CIA2_ARATH Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana
GN=CIA2 PE=2 SV=1
Length = 435
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 515
REA+++++++KR+ R F KKIRY RK A++RPR++G+FVR+ N
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRPN 427
>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2
PE=1 SV=1
Length = 347
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 513
REA ++++R+K+K R FDK IRY +RK AE RPR++G+F ++
Sbjct: 278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 320
>sp|Q9SHC2|ARR16_ARATH Two-component response regulator ARR16 OS=Arabidopsis thaliana
GN=ARR16 PE=1 SV=1
Length = 164
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 25 DGFIDRSKVRILL---CDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDL 81
D IDR V LL C + + +A+ +L + + Q IDAL + L
Sbjct: 36 DNLIDRKLVERLLKISCCKVTTAENALRAL------EYLGLGDQNQHIDALTCNVMKVSL 89
Query: 82 ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRT 141
I+ + +P G ++LK + L+ +PV++MS+++ + + KCL GA ++ KPL+
Sbjct: 90 IITDYCMPGMTGFELLKKVKESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKPLKL 149
Query: 142 NELLNLWTHMWRRR 155
++ L H+ R
Sbjct: 150 ADVEKLKCHLMNCR 163
>sp|Q01473|RCAC_FREDI Protein RcaC OS=Fremyella diplosiphon GN=rcaC PE=3 SV=2
Length = 651
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++++ D+D + + +LL ++VT++ P+Q L A D ++ +V++P G
Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDA--LVLDVNMPQING 584
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
++ + + D QR+PV+ +S + + + +G DYL KP++ EL N
Sbjct: 585 FELCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELAN 637
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
DLI+ ++ LP G+ + K +P+++++AQD ++ V+ L GA DY+VKP
Sbjct: 46 DLIILDIMLPNLDGISLCKRFRAQG--YTVPILLLTAQDNITAKVQGLDAGADDYVVKPF 103
Query: 140 RTNELL 145
EL+
Sbjct: 104 DPIELI 109
>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3
PE=1 SV=1
Length = 294
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 515
REA ++++R+KRK R F+K IRY +RK AE RPR++G+F ++ +
Sbjct: 229 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273
>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1
SV=1
Length = 373
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 513
REA ++++R+KRK R F+K IRY +RK AE RPRV G+F ++
Sbjct: 306 REARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348
>sp|P14375|ZRAR_ECOLI Transcriptional regulatory protein ZraR OS=Escherichia coli (strain
K12) GN=zraR PE=1 SV=2
Length = 441
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+ IL+ D+D + + +LL Y V S RQ ++ + + DL+L +V +
Sbjct: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMD 63
Query: 93 GLKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
G+ LK I K L IPV++M+A V V+ L+ GA DYL+KPL
Sbjct: 64 GIATLKEI---KALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL 108
>sp|P03029|NTRC_KLEPN Nitrogen assimilation regulatory protein OS=Klebsiella pneumoniae
GN=ntrC PE=1 SV=1
Length = 469
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 37 LCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKM 96
+ D+DS+ + L T+ S +V+DAL + D+ +L+++ +P GL +
Sbjct: 8 IVDDDSSIRWVLERALTGAGLSCTTFESGNEVLDALTTKTPDV--LLSDIRMPGMDGLAL 65
Query: 97 LKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
LK I + + +PVI+M+A ++ V + GA DYL KP +E + L
Sbjct: 66 LKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>sp|P45606|PHOB_SHIDY Phosphate regulon transcriptional regulatory protein PhoB
OS=Shigella dysenteriae GN=phoB PE=3 SV=1
Length = 229
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + V +L + +Q ++ LN D LIL + LP G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++ +K++ R+ + IPV+M++A+ E V+ L GA DY+ KP EL+
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELV 113
>sp|P0AFJ5|PHOB_ECOLI Phosphate regulon transcriptional regulatory protein PhoB
OS=Escherichia coli (strain K12) GN=phoB PE=1 SV=1
Length = 229
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + V +L + +Q ++ LN D LIL + LP G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++ +K++ R+ + IPV+M++A+ E V+ L GA DY+ KP EL+
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELV 113
>sp|P0AFJ6|PHOB_ECO57 Phosphate regulon transcriptional regulatory protein PhoB
OS=Escherichia coli O157:H7 GN=phoB PE=3 SV=1
Length = 229
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + V +L + +Q ++ LN D LIL + LP G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++ +K++ R+ + IPV+M++A+ E V+ L GA DY+ KP EL+
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELV 113
>sp|P45607|PHOB_SHIFL Phosphate regulon transcriptional regulatory protein PhoB
OS=Shigella flexneri GN=phoB PE=3 SV=2
Length = 229
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + V +L + +Q ++ LN D LIL + LP G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++ +K++ R+ + IPV+M++A+ E V+ L GA DY+ KP EL+
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELV 113
>sp|Q06065|ATOC_ECOLI Acetoacetate metabolism regulatory protein AtoC OS=Escherichia coli
(strain K12) GN=atoC PE=3 SV=2
Length = 461
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDI--DLILAEVDLPMT 91
RIL+ D++ N + + ++ + R + +DI D++L ++ +P
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF----ADIHPDVVLMDIRMPEM 61
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
G+K LK + R E R PVI+M+A EV V+ LR GA DY++KP +EL
Sbjct: 62 DGIKALKEM-RSHE-TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDEL 112
>sp|P45189|PHOB_HAEIN Phosphate regulon transcriptional regulatory protein PhoB
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=phoB PE=3 SV=1
Length = 231
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ +++ + + L + Y V + A+N + LIL + LP G
Sbjct: 4 KILIVEDECAIREMIALFLSQKYYDVIEASDFK---TAINKIKENPKLILLDWMLPGRSG 60
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
++ ++YI + + IP+IM++A+ + CL GA DY+ KP LL +WR
Sbjct: 61 IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120
Query: 154 R 154
R
Sbjct: 121 R 121
>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis
thaliana GN=APRR4 PE=3 SV=1
Length = 292
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ D D + + L K YQVT + + L + DL + +V+
Sbjct: 42 LRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGD 101
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152
+ L I + +L P+I++S D V V K + GAADYL+KP+R +L ++ H+
Sbjct: 102 IFRFLSEIGSEMDL---PIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV 158
Query: 153 RRRR-----MLGLAEK 163
++ R + G AEK
Sbjct: 159 KKMRERRSVVTGEAEK 174
>sp|Q9RC52|CITT_BACHD Transcriptional regulatory protein CitT OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=citT PE=3 SV=1
Length = 230
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118
+++ R+ + +D L+ + + +DLIL +V +P KGL++L + R+K + + ++M++A
Sbjct: 33 ISTCRTGGEALDYLSEKAAALDLILLDVYIPDVKGLELL-WAIREK-FRDVDIMMVTAAK 90
Query: 119 EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159
EV V + LR G DYL+KP++ L ++R + G
Sbjct: 91 EVDTVQEALRGGIIDYLLKPVQKEVLHQRLDAYVQKRELFG 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 204,833,143
Number of Sequences: 539616
Number of extensions: 8582593
Number of successful extensions: 29271
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 305
Number of HSP's that attempted gapping in prelim test: 28631
Number of HSP's gapped (non-prelim): 840
length of query: 554
length of database: 191,569,459
effective HSP length: 123
effective length of query: 431
effective length of database: 125,196,691
effective search space: 53959773821
effective search space used: 53959773821
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)