Query 008761
Match_columns 554
No_of_seqs 450 out of 2364
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 16:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2201 CheB Chemotaxis respon 99.9 9.5E-25 2E-29 227.8 18.4 183 32-250 1-190 (350)
2 COG2204 AtoC Response regulato 99.9 1.5E-21 3.2E-26 210.7 18.4 162 31-196 3-177 (464)
3 COG0745 OmpR Response regulato 99.9 4.5E-21 9.8E-26 191.1 16.4 120 33-156 1-120 (229)
4 COG4753 Response regulator con 99.8 2.2E-19 4.8E-24 193.8 15.1 122 32-157 1-125 (475)
5 PRK12555 chemotaxis-specific m 99.8 4.2E-18 9.2E-23 177.3 20.3 177 33-248 1-184 (337)
6 COG4566 TtrR Response regulato 99.8 1.2E-18 2.6E-23 167.4 14.3 121 32-156 4-124 (202)
7 COG4565 CitB Response regulato 99.8 3.4E-18 7.5E-23 166.9 15.4 123 33-159 1-125 (224)
8 PF00072 Response_reg: Respons 99.8 9.4E-18 2E-22 144.3 16.4 111 35-149 1-112 (112)
9 PRK00742 chemotaxis-specific m 99.8 3.5E-17 7.7E-22 171.4 20.5 106 30-140 1-110 (354)
10 PF06203 CCT: CCT motif; Inte 99.7 6.5E-19 1.4E-23 132.4 2.7 44 471-514 1-44 (45)
11 COG0784 CheY FOG: CheY-like re 99.7 3.2E-16 6.9E-21 137.9 17.2 120 30-152 3-124 (130)
12 COG2197 CitB Response regulato 99.7 1.7E-16 3.7E-21 156.1 16.6 119 33-155 1-121 (211)
13 COG3437 Response regulator con 99.7 5.7E-17 1.2E-21 168.5 13.3 122 31-154 13-135 (360)
14 PRK10046 dpiA two-component re 99.7 7.6E-16 1.6E-20 150.9 18.0 123 32-158 4-128 (225)
15 PLN03029 type-a response regul 99.7 1.7E-15 3.7E-20 149.7 18.3 125 30-154 6-148 (222)
16 PRK11173 two-component respons 99.7 1.9E-15 4.1E-20 147.0 17.2 119 31-154 2-120 (237)
17 COG3706 PleD Response regulato 99.7 9.7E-16 2.1E-20 164.7 16.6 125 31-157 131-255 (435)
18 PRK10529 DNA-binding transcrip 99.7 2.5E-15 5.5E-20 143.9 17.3 117 33-154 2-118 (225)
19 PRK10816 DNA-binding transcrip 99.7 2.8E-15 6.1E-20 143.7 17.2 118 33-154 1-118 (223)
20 PRK10161 transcriptional regul 99.7 4.6E-15 1E-19 142.8 17.5 121 32-154 2-122 (229)
21 PRK09836 DNA-binding transcrip 99.6 4.9E-15 1.1E-19 142.4 17.3 117 34-154 2-118 (227)
22 PRK10643 DNA-binding transcrip 99.6 5.6E-15 1.2E-19 140.1 17.4 118 33-154 1-118 (222)
23 TIGR02154 PhoB phosphate regul 99.6 5.6E-15 1.2E-19 140.2 17.2 121 32-154 2-122 (226)
24 PRK10766 DNA-binding transcrip 99.6 6.2E-15 1.4E-19 140.9 17.2 119 32-155 2-120 (221)
25 PRK11083 DNA-binding response 99.6 5.9E-15 1.3E-19 140.5 16.8 121 30-154 1-121 (228)
26 PRK10430 DNA-binding transcrip 99.6 8.4E-15 1.8E-19 144.7 17.9 123 32-156 1-125 (239)
27 PRK10336 DNA-binding transcrip 99.6 1E-14 2.2E-19 138.4 17.0 118 33-154 1-118 (219)
28 PRK10701 DNA-binding transcrip 99.6 1E-14 2.2E-19 141.9 17.2 117 33-154 2-118 (240)
29 PRK09468 ompR osmolarity respo 99.6 1.1E-14 2.4E-19 141.3 17.2 119 32-154 5-123 (239)
30 CHL00148 orf27 Ycf27; Reviewed 99.6 1.7E-14 3.8E-19 139.0 18.0 121 30-155 4-124 (240)
31 PRK10955 DNA-binding transcrip 99.6 1.5E-14 3.2E-19 138.7 17.0 117 33-155 2-118 (232)
32 PRK13856 two-component respons 99.6 1.5E-14 3.3E-19 141.5 17.3 117 33-154 2-119 (241)
33 TIGR03787 marine_sort_RR prote 99.6 1.9E-14 4.2E-19 138.0 17.6 118 34-155 2-121 (227)
34 PRK10923 glnG nitrogen regulat 99.6 1.9E-14 4.1E-19 155.8 19.2 121 31-155 2-122 (469)
35 COG3947 Response regulator con 99.6 1.8E-15 3.9E-20 153.6 9.8 121 33-159 1-121 (361)
36 PRK10840 transcriptional regul 99.6 2.3E-14 4.9E-19 138.9 16.7 121 30-154 1-126 (216)
37 PRK11517 transcriptional regul 99.6 2.7E-14 5.8E-19 136.1 16.9 117 33-154 1-117 (223)
38 PRK10365 transcriptional regul 99.6 2.3E-14 5E-19 153.3 17.7 121 31-155 4-124 (441)
39 TIGR02875 spore_0_A sporulatio 99.6 3.3E-14 7.2E-19 141.7 17.0 120 32-153 2-123 (262)
40 PRK11107 hybrid sensory histid 99.6 2.2E-14 4.8E-19 165.5 17.0 121 31-153 666-786 (919)
41 TIGR01387 cztR_silR_copR heavy 99.6 5.8E-14 1.2E-18 132.8 16.2 116 35-154 1-116 (218)
42 PRK09483 response regulator; P 99.6 6.8E-14 1.5E-18 133.1 16.6 120 32-155 1-122 (217)
43 PRK10841 hybrid sensory kinase 99.6 4E-14 8.7E-19 166.0 18.0 121 31-155 800-920 (924)
44 COG4567 Response regulator con 99.6 3.3E-14 7.1E-19 132.6 13.4 112 34-149 11-122 (182)
45 PRK09581 pleD response regulat 99.6 2.1E-14 4.5E-19 151.3 13.7 122 31-155 154-275 (457)
46 PRK09958 DNA-binding transcrip 99.6 9E-14 2E-18 131.0 16.5 118 33-154 1-119 (204)
47 PRK09935 transcriptional regul 99.6 1.3E-13 2.8E-18 129.7 16.6 121 30-154 1-123 (210)
48 PRK15347 two component system 99.6 5.8E-14 1.2E-18 162.3 17.1 120 32-153 690-811 (921)
49 TIGR02915 PEP_resp_reg putativ 99.6 8.5E-14 1.8E-18 149.6 17.1 115 35-155 1-120 (445)
50 PRK11361 acetoacetate metaboli 99.6 1E-13 2.2E-18 149.2 17.6 119 32-154 4-122 (457)
51 PRK15115 response regulator Gl 99.6 7.6E-14 1.6E-18 150.0 16.5 121 30-154 3-123 (444)
52 PRK14084 two-component respons 99.5 1.7E-13 3.6E-18 134.8 16.9 116 33-154 1-118 (246)
53 KOG0519 Sensory transduction h 99.5 3.6E-14 7.9E-19 163.6 13.6 120 31-152 665-784 (786)
54 PRK10360 DNA-binding transcrip 99.5 1.9E-13 4.1E-18 128.0 16.0 116 32-154 1-118 (196)
55 PRK11697 putative two-componen 99.5 2.2E-13 4.8E-18 132.8 16.2 115 32-153 1-117 (238)
56 PRK10610 chemotaxis regulatory 99.5 8.3E-13 1.8E-17 111.3 17.6 124 29-154 2-126 (129)
57 PRK11466 hybrid sensory histid 99.5 1.8E-13 3.9E-18 158.7 17.3 121 31-154 680-800 (914)
58 TIGR02956 TMAO_torS TMAO reduc 99.5 1.8E-13 4E-18 159.2 17.1 121 31-153 701-822 (968)
59 TIGR01818 ntrC nitrogen regula 99.5 3.3E-13 7.2E-18 145.6 17.8 117 35-155 1-117 (463)
60 PRK15479 transcriptional regul 99.5 5.6E-13 1.2E-17 126.4 17.2 119 33-155 1-119 (221)
61 PRK10710 DNA-binding transcrip 99.5 7.3E-13 1.6E-17 127.7 17.7 118 32-154 10-127 (240)
62 PRK09581 pleD response regulat 99.5 6E-13 1.3E-17 140.3 18.5 124 32-157 2-125 (457)
63 PRK09390 fixJ response regulat 99.5 4.7E-13 1E-17 123.7 14.9 120 31-154 2-121 (202)
64 PRK11091 aerobic respiration c 99.5 3.4E-13 7.3E-18 154.4 16.7 121 30-153 523-644 (779)
65 PRK09959 hybrid sensory histid 99.5 5.3E-13 1.2E-17 159.3 16.9 119 31-153 957-1075(1197)
66 PRK13435 response regulator; P 99.5 1.1E-12 2.5E-17 118.5 14.7 117 30-154 3-121 (145)
67 PRK15369 two component system 99.4 4.1E-12 9E-17 117.9 16.8 121 30-154 1-123 (211)
68 PRK10403 transcriptional regul 99.4 6.5E-12 1.4E-16 117.8 17.0 120 31-154 5-126 (215)
69 PRK10651 transcriptional regul 99.4 6.5E-12 1.4E-16 118.1 16.9 120 31-154 5-126 (216)
70 PRK13558 bacterio-opsin activa 99.4 1.8E-12 4E-17 145.8 14.6 118 32-153 7-126 (665)
71 PRK10100 DNA-binding transcrip 99.4 2.8E-12 6.1E-17 126.9 13.9 119 30-157 8-130 (216)
72 PRK11475 DNA-binding transcrip 99.3 1.1E-11 2.4E-16 122.0 13.4 108 45-156 3-117 (207)
73 PRK15411 rcsA colanic acid cap 99.3 2.1E-11 4.5E-16 119.6 14.0 118 33-155 1-124 (207)
74 COG3707 AmiR Response regulato 99.3 3.5E-11 7.5E-16 116.5 13.4 119 30-153 3-122 (194)
75 PRK09191 two-component respons 99.3 7.9E-11 1.7E-15 116.5 15.6 117 31-154 136-254 (261)
76 cd00156 REC Signal receiver do 99.3 1.4E-10 3E-15 92.8 13.1 111 36-150 1-111 (113)
77 PRK13837 two-component VirA-li 99.2 1.5E-10 3.3E-15 134.3 16.4 118 32-154 697-814 (828)
78 PRK13557 histidine kinase; Pro 99.2 4E-10 8.8E-15 121.4 15.5 119 32-153 415-534 (540)
79 PRK10693 response regulator of 99.1 2.9E-10 6.3E-15 117.5 12.7 89 61-153 2-91 (303)
80 COG3279 LytT Response regulato 99.0 1E-09 2.2E-14 110.7 10.8 117 32-154 1-119 (244)
81 PRK15029 arginine decarboxylas 99.0 2.7E-09 5.9E-14 122.5 14.1 118 34-155 2-134 (755)
82 PRK11107 hybrid sensory histid 98.3 7.4E-06 1.6E-10 95.2 14.5 116 31-152 535-650 (919)
83 COG3706 PleD Response regulato 98.2 2.9E-06 6.3E-11 92.2 7.4 95 57-157 13-107 (435)
84 smart00448 REC cheY-homologous 97.6 0.00053 1.1E-08 47.4 8.1 54 34-89 2-55 (55)
85 PF06490 FleQ: Flagellar regul 97.4 0.0012 2.6E-08 59.0 10.0 107 34-151 1-107 (109)
86 PRK02261 methylaspartate mutas 97.1 0.02 4.2E-07 53.4 14.7 120 30-153 1-135 (137)
87 PF01339 CheB_methylest: CheB 96.8 0.00054 1.2E-08 66.6 1.8 30 219-249 1-31 (182)
88 cd02071 MM_CoA_mut_B12_BD meth 96.8 0.043 9.3E-07 49.6 13.7 107 39-149 10-121 (122)
89 TIGR00640 acid_CoA_mut_C methy 96.7 0.088 1.9E-06 48.8 15.3 116 33-152 3-127 (132)
90 PF03709 OKR_DC_1_N: Orn/Lys/A 95.7 0.13 2.8E-06 46.2 10.9 105 45-153 6-113 (115)
91 cd02067 B12-binding B12 bindin 95.6 0.18 3.9E-06 44.9 11.3 94 39-137 10-109 (119)
92 TIGR01501 MthylAspMutase methy 95.3 0.38 8.3E-06 44.9 12.5 104 45-152 18-132 (134)
93 KOG1601 GATA-4/5/6 transcripti 95.1 0.0092 2E-07 58.7 1.2 63 78-140 63-125 (340)
94 PRK10618 phosphotransfer inter 94.5 0.037 8E-07 65.9 4.6 50 31-88 688-737 (894)
95 PF09425 CCT_2: Divergent CCT 94.5 0.022 4.7E-07 38.9 1.5 25 469-494 2-26 (27)
96 cd04728 ThiG Thiazole synthase 94.0 1 2.2E-05 46.1 13.0 117 31-158 92-230 (248)
97 PRK00208 thiG thiazole synthas 93.7 1.1 2.5E-05 45.8 12.7 117 31-158 92-230 (250)
98 COG2185 Sbm Methylmalonyl-CoA 93.7 2.4 5.2E-05 40.1 13.9 117 31-152 11-137 (143)
99 PRK15399 lysine decarboxylase 93.5 0.78 1.7E-05 53.5 12.6 117 33-155 1-124 (713)
100 cd02072 Glm_B12_BD B12 binding 93.2 2 4.4E-05 39.8 12.5 101 45-149 16-127 (128)
101 cd02070 corrinoid_protein_B12- 93.1 1.4 3.1E-05 43.2 12.2 100 32-136 82-190 (201)
102 TIGR03815 CpaE_hom_Actino heli 92.9 0.31 6.7E-06 50.9 7.7 84 56-151 1-85 (322)
103 PRK15400 lysine decarboxylase 92.5 1.1 2.3E-05 52.4 11.9 115 33-154 1-123 (714)
104 PF02310 B12-binding: B12 bind 90.6 3.4 7.5E-05 36.2 10.6 92 41-137 13-111 (121)
105 cd02069 methionine_synthase_B1 90.4 3.9 8.5E-05 40.8 12.0 102 32-137 88-201 (213)
106 COG4999 Uncharacterized domain 90.1 1.1 2.5E-05 41.2 7.0 107 32-147 11-120 (140)
107 PF01408 GFO_IDH_MocA: Oxidore 89.6 13 0.00028 32.4 13.4 102 33-151 1-109 (120)
108 PRK00043 thiE thiamine-phospha 88.8 7.2 0.00016 37.7 12.3 75 56-136 104-187 (212)
109 PRK09426 methylmalonyl-CoA mut 87.7 7.6 0.00017 45.6 13.5 117 32-152 582-707 (714)
110 TIGR02370 pyl_corrinoid methyl 87.2 7 0.00015 38.4 11.2 99 33-136 85-192 (197)
111 PRK01130 N-acetylmannosamine-6 87.2 8 0.00017 38.2 11.7 86 46-137 108-202 (221)
112 CHL00162 thiG thiamin biosynth 86.0 25 0.00055 36.5 14.5 120 32-158 107-244 (267)
113 PF10087 DUF2325: Uncharacteri 84.2 9.8 0.00021 32.9 9.4 90 34-127 1-93 (97)
114 cd02068 radical_SAM_B12_BD B12 83.6 11 0.00025 33.7 9.9 103 44-150 4-109 (127)
115 TIGR03151 enACPred_II putative 83.2 11 0.00025 39.5 11.1 84 48-137 101-190 (307)
116 PRK00278 trpC indole-3-glycero 83.0 28 0.00061 35.8 13.6 90 42-136 146-239 (260)
117 PRK03958 tRNA 2'-O-methylase; 81.8 12 0.00026 36.7 9.7 78 33-116 32-111 (176)
118 COG0512 PabA Anthranilate/para 81.3 3.9 8.4E-05 40.5 6.3 77 32-115 1-81 (191)
119 PF05690 ThiG: Thiazole biosyn 81.1 12 0.00026 38.3 9.9 119 32-157 93-229 (247)
120 cd04729 NanE N-acetylmannosami 80.4 27 0.0006 34.4 12.2 84 48-137 114-206 (219)
121 PRK11840 bifunctional sulfur c 79.3 43 0.00092 35.9 13.6 120 32-158 167-304 (326)
122 TIGR02026 BchE magnesium-proto 77.7 29 0.00064 38.8 12.7 106 41-151 21-135 (497)
123 PRK10128 2-keto-3-deoxy-L-rham 76.7 25 0.00054 36.5 10.9 100 47-149 8-110 (267)
124 PRK10558 alpha-dehydro-beta-de 76.7 22 0.00048 36.5 10.5 102 45-149 7-111 (256)
125 TIGR00693 thiE thiamine-phosph 75.9 24 0.00052 33.9 10.0 70 61-136 102-179 (196)
126 TIGR02311 HpaI 2,4-dihydroxyhe 75.8 27 0.00057 35.7 10.7 101 48-151 3-106 (249)
127 cd02065 B12-binding_like B12 b 75.7 21 0.00046 31.2 8.9 73 39-115 10-87 (125)
128 PF02254 TrkA_N: TrkA-N domain 75.3 40 0.00086 29.2 10.4 94 32-136 21-115 (116)
129 PRK05749 3-deoxy-D-manno-octul 74.9 29 0.00063 37.2 11.4 111 32-154 262-388 (425)
130 PF03060 NMO: Nitronate monoox 74.5 31 0.00067 36.6 11.2 83 48-136 128-218 (330)
131 PRK02290 3-dehydroquinate synt 74.1 37 0.0008 36.6 11.5 68 79-151 89-158 (344)
132 cd00564 TMP_TenI Thiamine mono 73.8 31 0.00066 32.4 10.0 74 56-136 95-177 (196)
133 PRK08385 nicotinate-nucleotide 73.5 37 0.00079 35.6 11.2 95 35-135 157-257 (278)
134 cd04730 NPD_like 2-Nitropropan 72.9 56 0.0012 32.2 12.0 84 48-137 94-185 (236)
135 PF04321 RmlD_sub_bind: RmlD s 72.9 9.9 0.00022 39.1 6.9 80 33-117 1-102 (286)
136 PLN02871 UDP-sulfoquinovose:DA 72.2 54 0.0012 35.9 12.8 108 32-154 290-400 (465)
137 cd04727 pdxS PdxS is a subunit 72.1 31 0.00066 36.3 10.1 86 61-152 118-245 (283)
138 cd00452 KDPG_aldolase KDPG and 71.8 32 0.00068 33.3 9.7 76 54-137 95-171 (190)
139 COG2022 ThiG Uncharacterized e 71.7 37 0.0008 35.0 10.2 118 32-156 100-235 (262)
140 COG0352 ThiE Thiamine monophos 71.3 1E+02 0.0022 31.1 13.3 72 57-135 105-184 (211)
141 TIGR03239 GarL 2-dehydro-3-deo 71.1 40 0.00087 34.5 10.7 99 48-149 3-104 (249)
142 TIGR00007 phosphoribosylformim 70.3 60 0.0013 32.0 11.6 68 64-136 146-217 (230)
143 PRK05567 inosine 5'-monophosph 70.1 60 0.0013 36.4 12.7 103 31-137 239-360 (486)
144 cd04726 KGPDC_HPS 3-Keto-L-gul 69.5 89 0.0019 30.0 12.3 86 45-137 92-186 (202)
145 TIGR00343 pyridoxal 5'-phospha 69.5 36 0.00077 35.9 9.9 59 92-153 184-249 (287)
146 PF07688 KaiA: KaiA domain; I 69.1 22 0.00047 37.0 8.1 79 34-117 2-80 (283)
147 PRK15484 lipopolysaccharide 1, 69.1 1.2E+02 0.0027 32.2 14.4 111 32-155 224-345 (380)
148 cd00331 IGPS Indole-3-glycerol 69.1 67 0.0014 31.5 11.5 79 53-136 118-200 (217)
149 PRK05458 guanosine 5'-monophos 68.6 91 0.002 33.4 13.1 98 34-137 113-230 (326)
150 PF04131 NanE: Putative N-acet 68.4 78 0.0017 31.5 11.6 86 45-137 81-173 (192)
151 COG0673 MviM Predicted dehydro 68.3 91 0.002 32.1 12.9 104 30-149 1-112 (342)
152 PF03602 Cons_hypoth95: Conser 67.6 41 0.00089 32.7 9.5 74 30-103 63-140 (183)
153 cd03823 GT1_ExpE7_like This fa 67.2 1.1E+02 0.0024 30.3 12.9 67 79-154 263-329 (359)
154 PTZ00314 inosine-5'-monophosph 66.9 55 0.0012 36.9 11.6 103 32-137 253-373 (495)
155 TIGR03088 stp2 sugar transfera 66.1 50 0.0011 34.2 10.5 108 32-154 229-338 (374)
156 PRK05458 guanosine 5'-monophos 65.8 20 0.00044 38.3 7.5 67 65-135 99-166 (326)
157 PRK07695 transcriptional regul 65.1 92 0.002 30.2 11.5 67 61-134 101-174 (201)
158 COG3836 HpcH 2,4-dihydroxyhept 64.9 77 0.0017 32.7 11.0 92 47-141 7-100 (255)
159 COG3967 DltE Short-chain dehyd 64.8 39 0.00085 34.4 8.8 81 32-116 5-86 (245)
160 PRK13125 trpA tryptophan synth 64.1 87 0.0019 31.7 11.5 90 44-138 117-215 (244)
161 PLN02274 inosine-5'-monophosph 63.7 1E+02 0.0022 34.9 13.0 100 32-137 260-380 (505)
162 PF02581 TMP-TENI: Thiamine mo 62.5 62 0.0013 31.0 9.6 71 58-135 97-175 (180)
163 TIGR00566 trpG_papA glutamine 62.3 21 0.00046 34.6 6.4 48 35-84 2-49 (188)
164 PRK00748 1-(5-phosphoribosyl)- 62.2 45 0.00097 32.9 8.9 67 65-136 148-219 (233)
165 PRK12724 flagellar biosynthesi 61.9 92 0.002 34.7 11.8 102 32-136 252-366 (432)
166 PRK09140 2-dehydro-3-deoxy-6-p 61.8 77 0.0017 31.5 10.4 95 48-147 3-99 (206)
167 TIGR01037 pyrD_sub1_fam dihydr 61.8 1.1E+02 0.0023 31.7 11.9 58 94-154 223-286 (300)
168 PRK07649 para-aminobenzoate/an 61.8 10 0.00022 37.2 4.1 49 35-85 2-50 (195)
169 TIGR01305 GMP_reduct_1 guanosi 60.9 41 0.00089 36.3 8.7 57 78-137 121-178 (343)
170 cd06533 Glyco_transf_WecG_TagA 60.7 61 0.0013 31.0 9.2 78 31-115 45-131 (171)
171 PLN02591 tryptophan synthase 60.6 27 0.00058 35.9 7.1 57 92-151 65-127 (250)
172 cd03820 GT1_amsD_like This fam 60.3 1.7E+02 0.0037 28.5 13.2 110 32-155 209-320 (348)
173 PRK06843 inosine 5-monophospha 60.3 1.5E+02 0.0032 32.9 13.0 103 32-137 165-285 (404)
174 TIGR01761 thiaz-red thiazoliny 60.2 1.1E+02 0.0025 32.8 12.0 100 32-150 3-110 (343)
175 PF03808 Glyco_tran_WecB: Glyc 60.1 89 0.0019 29.9 10.2 69 31-103 47-124 (172)
176 PRK13111 trpA tryptophan synth 59.8 34 0.00074 35.3 7.7 58 92-151 75-138 (258)
177 TIGR00095 RNA methyltransferas 59.5 1.2E+02 0.0025 29.6 11.0 84 33-116 73-159 (189)
178 cd04962 GT1_like_5 This family 59.4 1E+02 0.0022 31.5 11.2 107 32-153 227-335 (371)
179 PRK06774 para-aminobenzoate sy 59.2 12 0.00027 36.1 4.2 49 35-85 2-50 (191)
180 PF09936 Methyltrn_RNA_4: SAM- 59.1 1.1E+02 0.0024 30.3 10.6 101 33-141 43-162 (185)
181 PLN02335 anthranilate synthase 59.0 17 0.00037 36.4 5.2 78 33-115 19-98 (222)
182 cd03813 GT1_like_3 This family 58.8 1E+02 0.0023 33.9 11.8 109 32-155 324-443 (475)
183 PRK05848 nicotinate-nucleotide 58.6 1.6E+02 0.0036 30.7 12.5 94 34-136 154-256 (273)
184 TIGR01306 GMP_reduct_2 guanosi 58.6 1.7E+02 0.0037 31.3 12.9 99 33-137 109-227 (321)
185 cd00381 IMPDH IMPDH: The catal 58.3 1.3E+02 0.0029 31.9 12.0 101 32-136 106-225 (325)
186 PRK04302 triosephosphate isome 57.8 2E+02 0.0044 28.5 13.2 81 53-138 111-203 (223)
187 TIGR02082 metH 5-methyltetrahy 57.8 1E+02 0.0022 38.6 12.4 103 32-138 732-846 (1178)
188 PRK05581 ribulose-phosphate 3- 57.7 1.2E+02 0.0026 29.5 10.9 70 65-137 121-198 (220)
189 cd06346 PBP1_ABC_ligand_bindin 57.3 1.1E+02 0.0024 31.1 11.1 70 46-121 155-231 (312)
190 cd04724 Tryptophan_synthase_al 57.0 47 0.001 33.6 8.1 55 92-149 63-123 (242)
191 cd01948 EAL EAL domain. This d 56.7 38 0.00081 32.7 7.1 91 48-141 137-238 (240)
192 PF03328 HpcH_HpaI: HpcH/HpaI 56.4 1.2E+02 0.0027 29.8 10.8 85 63-150 8-105 (221)
193 cd04722 TIM_phosphate_binding 56.1 1.2E+02 0.0026 27.8 10.2 56 78-136 136-198 (200)
194 PRK07259 dihydroorotate dehydr 55.8 1.7E+02 0.0036 30.4 12.1 38 94-134 223-260 (301)
195 PRK12704 phosphodiesterase; Pr 55.4 13 0.00029 42.0 4.2 45 110-154 251-297 (520)
196 PRK14098 glycogen synthase; Pr 55.2 1.3E+02 0.0029 33.5 12.0 111 32-152 336-449 (489)
197 TIGR01163 rpe ribulose-phospha 55.0 45 0.00098 32.1 7.3 85 49-137 97-193 (210)
198 TIGR00262 trpA tryptophan synt 55.0 46 0.001 34.2 7.7 57 92-150 73-135 (256)
199 CHL00200 trpA tryptophan synth 54.5 40 0.00086 34.9 7.2 56 92-150 78-139 (263)
200 COG0157 NadC Nicotinate-nucleo 54.0 1.1E+02 0.0024 32.2 10.2 93 34-134 160-259 (280)
201 TIGR01334 modD putative molybd 54.0 1.8E+02 0.004 30.4 12.0 70 59-135 192-261 (277)
202 PRK06843 inosine 5-monophospha 54.0 59 0.0013 35.9 8.7 56 78-136 165-221 (404)
203 cd03818 GT1_ExpC_like This fam 53.7 2.2E+02 0.0048 30.1 12.9 78 64-155 290-367 (396)
204 PRK00726 murG undecaprenyldiph 53.7 2.5E+02 0.0055 29.0 13.2 66 79-155 253-325 (357)
205 PRK09922 UDP-D-galactose:(gluc 53.6 2.8E+02 0.0061 28.9 13.6 110 32-155 210-325 (359)
206 PRK09490 metH B12-dependent me 53.6 1.4E+02 0.003 37.6 12.7 103 32-138 751-865 (1229)
207 PRK13609 diacylglycerol glucos 53.2 2.4E+02 0.0052 29.6 13.1 106 32-154 230-338 (380)
208 cd03785 GT1_MurG MurG is an N- 53.2 2.7E+02 0.0058 28.5 13.1 66 79-154 253-324 (350)
209 PRK07028 bifunctional hexulose 53.2 3E+02 0.0064 30.2 14.1 99 48-152 99-210 (430)
210 PRK03659 glutathione-regulated 53.1 98 0.0021 35.6 10.8 97 32-139 423-520 (601)
211 TIGR01302 IMP_dehydrog inosine 53.0 1.8E+02 0.0038 32.4 12.4 103 32-137 236-356 (450)
212 cd04723 HisA_HisF Phosphoribos 53.0 84 0.0018 31.6 9.1 67 65-136 148-217 (233)
213 cd01573 modD_like ModD; Quinol 52.6 1.5E+02 0.0033 30.7 11.2 70 60-136 188-257 (272)
214 cd05212 NAD_bind_m-THF_DH_Cycl 52.3 48 0.0011 31.0 6.8 54 30-90 26-83 (140)
215 cd06338 PBP1_ABC_ligand_bindin 52.1 1.7E+02 0.0038 29.9 11.6 67 44-116 157-230 (345)
216 PRK06543 nicotinate-nucleotide 52.0 2.9E+02 0.0062 29.1 13.0 91 34-134 161-262 (281)
217 cd01836 FeeA_FeeB_like SGNH_hy 52.0 58 0.0013 30.6 7.4 83 32-116 2-114 (191)
218 TIGR00736 nifR3_rel_arch TIM-b 51.5 87 0.0019 31.9 8.9 66 67-136 152-219 (231)
219 PRK05703 flhF flagellar biosyn 51.2 1.6E+02 0.0036 32.4 11.7 92 32-124 251-348 (424)
220 PF00534 Glycos_transf_1: Glyc 51.2 1.9E+02 0.0041 26.2 12.2 112 31-157 46-161 (172)
221 PF14097 SpoVAE: Stage V sporu 51.1 1.7E+02 0.0037 28.8 10.3 75 35-112 3-86 (180)
222 smart00052 EAL Putative diguan 51.0 77 0.0017 30.5 8.3 92 47-141 137-239 (241)
223 cd00429 RPE Ribulose-5-phospha 50.9 50 0.0011 31.7 6.9 59 78-137 127-194 (211)
224 PRK08007 para-aminobenzoate sy 50.8 19 0.00042 34.8 4.0 50 35-86 2-51 (187)
225 cd01827 sialate_O-acetylestera 49.9 90 0.002 29.1 8.4 38 78-117 67-117 (188)
226 cd03819 GT1_WavL_like This fam 49.7 2.9E+02 0.0062 27.8 13.1 108 32-152 216-328 (355)
227 cd03801 GT1_YqgM_like This fam 49.3 2.6E+02 0.0056 27.2 12.6 109 32-155 230-342 (374)
228 PF01729 QRPTase_C: Quinolinat 49.1 71 0.0015 30.9 7.5 69 60-135 85-153 (169)
229 PRK15427 colanic acid biosynth 49.0 3.4E+02 0.0073 29.3 13.6 108 32-153 253-369 (406)
230 cd03825 GT1_wcfI_like This fam 48.9 59 0.0013 32.8 7.4 75 33-114 1-82 (365)
231 PRK13587 1-(5-phosphoribosyl)- 48.8 1.1E+02 0.0024 30.9 9.3 67 66-136 151-220 (234)
232 PRK05718 keto-hydroxyglutarate 48.7 2.7E+02 0.0058 27.9 11.8 94 48-147 8-103 (212)
233 PRK06096 molybdenum transport 48.6 84 0.0018 33.1 8.5 70 59-135 193-262 (284)
234 PRK11359 cyclic-di-GMP phospho 48.4 1.7E+02 0.0037 33.9 11.9 101 47-150 682-793 (799)
235 PRK03562 glutathione-regulated 48.4 1E+02 0.0022 35.6 10.0 94 32-136 423-517 (621)
236 TIGR01305 GMP_reduct_1 guanosi 48.1 3E+02 0.0065 29.9 12.6 103 32-137 121-241 (343)
237 cd03804 GT1_wbaZ_like This fam 48.0 1.8E+02 0.0039 29.8 10.9 106 33-155 222-327 (351)
238 TIGR00735 hisF imidazoleglycer 47.9 2E+02 0.0044 29.1 11.1 67 65-136 157-228 (254)
239 PRK03372 ppnK inorganic polyph 47.9 1.8E+02 0.004 30.8 11.0 105 30-154 2-128 (306)
240 PRK04180 pyridoxal biosynthesi 47.8 58 0.0013 34.4 7.1 59 92-153 190-255 (293)
241 PRK00025 lpxB lipid-A-disaccha 47.6 2.9E+02 0.0063 28.8 12.6 67 79-156 262-343 (380)
242 COG1927 Mtd Coenzyme F420-depe 47.3 1.7E+02 0.0038 29.8 10.0 80 54-138 29-117 (277)
243 PRK14974 cell division protein 47.3 2.4E+02 0.0052 30.3 11.9 102 32-136 168-286 (336)
244 PRK02083 imidazole glycerol ph 47.0 2.2E+02 0.0048 28.7 11.1 79 65-148 155-244 (253)
245 TIGR03590 PseG pseudaminic aci 46.9 1.4E+02 0.003 30.7 9.7 63 48-119 45-114 (279)
246 cd02809 alpha_hydroxyacid_oxid 46.8 2.3E+02 0.005 29.5 11.5 75 61-139 179-259 (299)
247 cd01572 QPRTase Quinolinate ph 46.7 2.6E+02 0.0055 29.0 11.7 91 34-134 154-251 (268)
248 TIGR03449 mycothiol_MshA UDP-N 46.7 3.7E+02 0.008 28.2 14.1 108 33-154 253-368 (405)
249 PF01959 DHQS: 3-dehydroquinat 46.6 1.9E+02 0.0041 31.5 10.8 69 79-151 97-167 (354)
250 cd04740 DHOD_1B_like Dihydroor 46.6 3.4E+02 0.0073 27.9 12.6 38 94-134 220-257 (296)
251 PRK07896 nicotinate-nucleotide 46.5 1.4E+02 0.0031 31.5 9.8 70 59-135 203-272 (289)
252 PRK00994 F420-dependent methyl 46.3 1.3E+02 0.0029 31.1 9.1 79 54-138 29-116 (277)
253 TIGR00734 hisAF_rel hisA/hisF 46.3 1.3E+02 0.0028 30.1 9.2 69 63-136 141-212 (221)
254 PRK03708 ppnK inorganic polyph 46.2 1.5E+02 0.0033 30.8 10.0 99 33-154 1-112 (277)
255 TIGR00696 wecB_tagA_cpsF bacte 46.1 1.2E+02 0.0027 29.4 8.8 68 31-102 47-122 (177)
256 PLN02591 tryptophan synthase 46.1 2.6E+02 0.0057 28.8 11.5 100 34-138 109-219 (250)
257 PRK08072 nicotinate-nucleotide 46.0 2.4E+02 0.0053 29.5 11.4 92 34-135 160-258 (277)
258 PRK10669 putative cation:proto 45.9 1.9E+02 0.0041 32.8 11.5 94 32-136 440-534 (558)
259 cd08185 Fe-ADH1 Iron-containin 45.6 1.2E+02 0.0026 32.7 9.4 63 33-100 26-102 (380)
260 cd08187 BDH Butanol dehydrogen 45.4 1.3E+02 0.0029 32.4 9.7 63 33-100 29-105 (382)
261 PRK05653 fabG 3-ketoacyl-(acyl 45.4 2E+02 0.0043 27.4 10.2 84 29-116 2-90 (246)
262 TIGR01361 DAHP_synth_Bsub phos 44.9 2.1E+02 0.0045 29.5 10.7 72 65-140 148-233 (260)
263 PRK01362 putative translaldola 44.5 1.2E+02 0.0027 30.4 8.7 84 51-137 96-185 (214)
264 PRK05637 anthranilate synthase 44.1 42 0.00091 33.3 5.3 49 33-84 2-50 (208)
265 TIGR00078 nadC nicotinate-nucl 44.0 2.2E+02 0.0048 29.5 10.7 93 34-136 150-249 (265)
266 cd06382 PBP1_iGluR_Kainate N-t 43.9 2E+02 0.0044 29.3 10.5 81 33-117 130-218 (327)
267 PRK08649 inosine 5-monophospha 43.8 3.6E+02 0.0078 29.4 12.7 66 64-136 142-214 (368)
268 PF04131 NanE: Putative N-acet 43.1 70 0.0015 31.9 6.5 68 56-133 45-115 (192)
269 PRK06512 thiamine-phosphate py 43.1 2.1E+02 0.0046 28.7 10.2 66 62-134 118-189 (221)
270 cd04951 GT1_WbdM_like This fam 42.9 2.1E+02 0.0045 28.8 10.3 105 32-153 219-325 (360)
271 COG1152 CdhA CO dehydrogenase/ 42.9 2E+02 0.0043 33.5 10.6 122 23-153 227-380 (772)
272 TIGR01303 IMP_DH_rel_1 IMP deh 42.8 1.2E+02 0.0025 34.2 9.0 68 63-135 224-292 (475)
273 COG0159 TrpA Tryptophan syntha 42.7 84 0.0018 32.8 7.3 52 92-145 80-137 (265)
274 COG0313 Predicted methyltransf 42.7 1.6E+02 0.0035 30.9 9.4 84 32-119 30-117 (275)
275 TIGR01302 IMP_dehydrog inosine 42.6 1E+02 0.0022 34.3 8.5 65 65-135 226-291 (450)
276 cd00956 Transaldolase_FSA Tran 42.2 1.3E+02 0.0027 30.1 8.3 49 90-138 137-186 (211)
277 cd04949 GT1_gtfA_like This fam 42.0 3E+02 0.0065 28.3 11.5 57 91-155 290-346 (372)
278 PF01596 Methyltransf_3: O-met 42.0 1.1E+02 0.0023 30.5 7.8 68 32-101 70-142 (205)
279 TIGR01163 rpe ribulose-phospha 41.8 2.4E+02 0.0051 27.1 10.0 53 92-147 43-96 (210)
280 TIGR03128 RuMP_HxlA 3-hexulose 41.7 3.3E+02 0.0071 26.2 14.1 85 46-136 92-185 (206)
281 PRK12290 thiE thiamine-phospha 41.7 3.5E+02 0.0077 30.3 12.3 94 57-154 301-414 (437)
282 PF07652 Flavi_DEAD: Flaviviru 41.7 1E+02 0.0022 29.5 7.2 87 31-118 32-136 (148)
283 PRK05567 inosine 5'-monophosph 41.6 98 0.0021 34.7 8.3 65 66-135 230-295 (486)
284 PRK05670 anthranilate synthase 41.5 36 0.00078 32.8 4.3 48 35-84 2-49 (189)
285 TIGR01306 GMP_reduct_2 guanosi 41.5 1.1E+02 0.0025 32.6 8.3 56 79-137 109-165 (321)
286 PRK09860 putative alcohol dehy 41.3 1.7E+02 0.0036 31.8 9.7 64 33-101 32-108 (383)
287 CHL00101 trpG anthranilate syn 41.2 34 0.00073 33.2 4.0 48 35-84 2-49 (190)
288 PRK06978 nicotinate-nucleotide 41.0 2.8E+02 0.0061 29.4 11.0 91 34-134 178-274 (294)
289 PRK00941 acetyl-CoA decarbonyl 40.7 4.6E+02 0.01 31.6 13.7 121 23-152 228-381 (781)
290 cd01844 SGNH_hydrolase_like_6 40.7 1.7E+02 0.0036 27.4 8.6 39 78-118 57-103 (177)
291 PLN02775 Probable dihydrodipic 40.7 4.7E+02 0.01 27.7 15.1 104 31-141 10-138 (286)
292 PRK02615 thiamine-phosphate py 40.4 3.4E+02 0.0073 29.4 11.7 68 61-135 246-320 (347)
293 TIGR00642 mmCoA_mut_beta methy 40.3 1.9E+02 0.004 33.9 10.3 108 32-147 494-611 (619)
294 PRK03378 ppnK inorganic polyph 40.1 1.4E+02 0.0031 31.3 8.7 103 32-154 5-119 (292)
295 KOG4175 Tryptophan synthase al 39.9 81 0.0018 32.0 6.4 40 107-146 94-139 (268)
296 PRK13111 trpA tryptophan synth 39.7 3.6E+02 0.0078 27.8 11.4 98 35-138 121-229 (258)
297 cd00381 IMPDH IMPDH: The catal 39.7 1.5E+02 0.0033 31.5 8.9 65 67-136 97-162 (325)
298 PRK05565 fabG 3-ketoacyl-(acyl 39.4 2.8E+02 0.0061 26.6 10.2 82 31-116 4-91 (247)
299 PRK00811 spermidine synthase; 39.4 2.2E+02 0.0047 29.5 9.9 55 33-90 101-162 (283)
300 cd06341 PBP1_ABC_ligand_bindin 39.3 2.6E+02 0.0056 28.6 10.5 71 45-121 150-227 (341)
301 PRK06559 nicotinate-nucleotide 39.2 4.3E+02 0.0094 28.0 12.0 91 34-134 169-266 (290)
302 cd03806 GT1_ALG11_like This fa 39.2 3.9E+02 0.0085 28.9 12.3 110 32-153 273-391 (419)
303 PF00478 IMPDH: IMP dehydrogen 39.0 1.4E+02 0.0031 32.3 8.7 69 64-137 108-177 (352)
304 PRK13566 anthranilate synthase 39.0 96 0.0021 36.8 7.9 78 31-115 525-605 (720)
305 COG2200 Rtn c-di-GMP phosphodi 38.8 3.2E+02 0.007 27.7 10.9 114 32-148 121-249 (256)
306 cd06326 PBP1_STKc_like Type I 38.7 3.9E+02 0.0084 27.1 11.6 66 46-117 154-226 (336)
307 PRK14569 D-alanyl-alanine synt 38.7 1.3E+02 0.0029 31.1 8.2 55 31-87 2-65 (296)
308 PRK05096 guanosine 5'-monophos 38.6 1.2E+02 0.0027 32.8 8.0 54 78-134 122-176 (346)
309 COG0300 DltE Short-chain dehyd 38.3 2E+02 0.0044 30.0 9.3 83 30-116 4-92 (265)
310 PRK07107 inosine 5-monophospha 38.3 1.9E+02 0.004 32.9 9.8 102 32-136 254-380 (502)
311 COG0269 SgbH 3-hexulose-6-phos 38.2 4.5E+02 0.0098 26.8 12.7 115 32-151 83-211 (217)
312 COG0742 N6-adenine-specific me 38.2 1.5E+02 0.0031 29.5 7.9 59 29-88 63-124 (187)
313 cd06282 PBP1_GntR_like_2 Ligan 38.0 2E+02 0.0044 27.7 9.0 63 46-116 19-87 (266)
314 PLN02898 HMP-P kinase/thiamin- 38.0 2.4E+02 0.0052 31.6 10.6 65 61-132 396-467 (502)
315 PRK06552 keto-hydroxyglutarate 37.9 4.3E+02 0.0093 26.5 11.4 95 49-147 7-104 (213)
316 cd01825 SGNH_hydrolase_peri1 S 37.9 68 0.0015 29.7 5.5 80 34-117 1-105 (189)
317 TIGR01133 murG undecaprenyldip 37.8 4.5E+02 0.0099 26.7 13.0 67 79-155 251-322 (348)
318 PRK10538 malonic semialdehyde 37.8 2.9E+02 0.0062 27.0 10.1 80 33-116 1-82 (248)
319 TIGR00262 trpA tryptophan synt 37.6 3E+02 0.0065 28.2 10.5 100 35-138 119-228 (256)
320 PRK06849 hypothetical protein; 37.5 3.5E+02 0.0076 28.9 11.5 38 31-68 3-40 (389)
321 PRK07428 nicotinate-nucleotide 37.5 4.5E+02 0.0097 27.7 11.8 95 34-135 168-269 (288)
322 PLN02274 inosine-5'-monophosph 37.4 1.5E+02 0.0032 33.7 8.8 68 64-136 248-316 (505)
323 TIGR01304 IMP_DH_rel_2 IMP deh 37.0 5.2E+02 0.011 28.2 12.6 65 64-135 143-214 (369)
324 PF00290 Trp_syntA: Tryptophan 37.0 60 0.0013 33.6 5.3 52 92-145 73-130 (259)
325 TIGR00875 fsa_talC_mipB fructo 36.9 1.6E+02 0.0035 29.5 8.2 84 51-138 96-186 (213)
326 cd08181 PPD-like 1,3-propanedi 36.8 2.5E+02 0.0054 30.0 10.2 63 33-100 26-102 (357)
327 PRK06138 short chain dehydroge 36.7 3.7E+02 0.008 25.9 10.7 82 31-116 4-89 (252)
328 cd06329 PBP1_SBP_like_3 Peripl 36.7 4E+02 0.0087 27.4 11.5 76 34-115 145-234 (342)
329 cd03795 GT1_like_4 This family 36.6 4.5E+02 0.0097 26.3 14.2 110 32-155 218-333 (357)
330 cd06273 PBP1_GntR_like_1 This 36.4 2.2E+02 0.0048 27.6 9.0 62 45-115 18-85 (268)
331 TIGR02095 glgA glycogen/starch 36.3 6E+02 0.013 27.7 13.3 107 33-153 321-436 (473)
332 cd03812 GT1_CapH_like This fam 36.3 3.8E+02 0.0083 26.9 11.1 110 32-157 223-334 (358)
333 PRK01911 ppnK inorganic polyph 36.3 1.7E+02 0.0038 30.7 8.6 101 34-154 2-120 (292)
334 cd06345 PBP1_ABC_ligand_bindin 36.2 4.4E+02 0.0095 27.1 11.6 65 46-116 162-233 (344)
335 PF00218 IGPS: Indole-3-glycer 36.1 3.2E+02 0.0069 28.3 10.3 87 46-137 148-238 (254)
336 PRK01395 V-type ATP synthase s 36.1 3.1E+02 0.0067 24.4 9.0 76 31-116 2-78 (104)
337 PRK07765 para-aminobenzoate sy 36.1 1.1E+02 0.0024 30.4 6.8 79 33-115 1-83 (214)
338 cd05013 SIS_RpiR RpiR-like pro 36.1 2.9E+02 0.0062 23.9 10.5 83 34-121 15-100 (139)
339 cd03799 GT1_amsK_like This is 36.0 4.6E+02 0.0099 26.2 11.8 110 32-155 210-328 (355)
340 PRK01033 imidazole glycerol ph 36.0 2.1E+02 0.0045 29.3 9.0 68 64-136 153-225 (258)
341 PRK02155 ppnK NAD(+)/NADH kina 35.8 3.6E+02 0.0078 28.3 10.9 101 34-154 7-119 (291)
342 PRK11889 flhF flagellar biosyn 35.8 5.1E+02 0.011 29.1 12.2 55 32-86 269-328 (436)
343 TIGR01859 fruc_bis_ald_ fructo 35.6 1.5E+02 0.0033 30.9 8.1 69 62-136 152-229 (282)
344 PRK14723 flhF flagellar biosyn 35.5 3.9E+02 0.0084 32.1 12.1 103 33-137 216-332 (767)
345 cd05844 GT1_like_7 Glycosyltra 35.4 4.9E+02 0.011 26.4 13.7 110 32-155 219-337 (367)
346 PRK12826 3-ketoacyl-(acyl-carr 35.4 3.1E+02 0.0067 26.3 9.8 81 32-116 6-91 (251)
347 cd06348 PBP1_ABC_ligand_bindin 35.3 3.4E+02 0.0073 27.9 10.6 64 43-112 152-222 (344)
348 PLN02716 nicotinate-nucleotide 35.3 3.2E+02 0.0069 29.2 10.4 69 60-134 208-287 (308)
349 cd04733 OYE_like_2_FMN Old yel 35.2 3.5E+02 0.0077 28.6 10.9 39 94-135 281-319 (338)
350 TIGR00064 ftsY signal recognit 35.1 3.6E+02 0.0078 27.9 10.7 54 32-87 100-163 (272)
351 PRK06106 nicotinate-nucleotide 35.1 5.2E+02 0.011 27.2 11.8 65 60-134 199-263 (281)
352 PRK06935 2-deoxy-D-gluconate 3 35.0 3.8E+02 0.0083 26.2 10.6 82 31-116 14-99 (258)
353 PHA03237 envelope glycoprotein 35.0 25 0.00054 38.9 2.2 20 470-489 345-364 (424)
354 cd08189 Fe-ADH5 Iron-containin 34.9 2.4E+02 0.0052 30.3 9.7 63 33-100 27-102 (374)
355 PRK01372 ddl D-alanine--D-alan 34.9 82 0.0018 32.2 5.9 54 30-85 2-63 (304)
356 PLN02935 Bifunctional NADH kin 34.9 3.2E+02 0.0069 31.2 10.8 107 28-154 190-318 (508)
357 PF06283 ThuA: Trehalose utili 34.6 95 0.0021 30.4 6.1 74 34-115 1-88 (217)
358 PLN02316 synthase/transferase 34.3 4.4E+02 0.0096 32.8 12.6 113 32-154 869-998 (1036)
359 cd01424 MGS_CPS_II Methylglyox 34.3 3.1E+02 0.0068 23.8 9.4 27 37-63 7-33 (110)
360 cd08194 Fe-ADH6 Iron-containin 34.3 2.4E+02 0.0052 30.3 9.6 63 33-100 24-99 (375)
361 cd01841 NnaC_like NnaC (CMP-Ne 34.2 1E+02 0.0022 28.4 6.0 80 34-116 2-98 (174)
362 cd04732 HisA HisA. Phosphorib 34.0 3E+02 0.0065 27.0 9.6 68 64-136 147-218 (234)
363 PRK06895 putative anthranilate 33.9 57 0.0012 31.5 4.4 31 33-63 2-32 (190)
364 PRK01231 ppnK inorganic polyph 33.9 3.3E+02 0.0072 28.6 10.3 101 34-154 6-118 (295)
365 cd01833 XynB_like SGNH_hydrola 33.9 27 0.00058 31.7 2.0 75 33-116 1-87 (157)
366 PRK12595 bifunctional 3-deoxy- 33.8 3.6E+02 0.0078 29.3 10.7 70 66-139 242-325 (360)
367 COG5012 Predicted cobalamin bi 33.8 1.3E+02 0.0028 30.8 6.8 86 46-138 122-214 (227)
368 PRK05557 fabG 3-ketoacyl-(acyl 33.6 4.3E+02 0.0093 25.2 10.5 83 30-116 3-91 (248)
369 PRK04457 spermidine synthase; 33.6 3.4E+02 0.0075 27.7 10.2 69 32-103 90-166 (262)
370 PRK06552 keto-hydroxyglutarate 33.6 2.5E+02 0.0054 28.1 8.9 85 41-134 94-180 (213)
371 cd01575 PBP1_GntR Ligand-bindi 33.6 2.6E+02 0.0055 27.0 8.9 62 46-116 19-86 (268)
372 PRK15490 Vi polysaccharide bio 33.6 8.3E+02 0.018 28.5 14.3 102 32-148 429-532 (578)
373 PRK12656 fructose-6-phosphate 33.6 2.3E+02 0.0051 28.7 8.7 49 90-138 141-190 (222)
374 cd01829 SGNH_hydrolase_peri2 S 33.4 2.4E+02 0.0051 26.5 8.5 55 34-90 1-71 (200)
375 cd01840 SGNH_hydrolase_yrhL_li 33.4 2.7E+02 0.0058 25.4 8.6 82 35-117 2-88 (150)
376 cd08176 LPO Lactadehyde:propan 33.3 2.5E+02 0.0054 30.2 9.5 63 33-100 29-104 (377)
377 PF14606 Lipase_GDSL_3: GDSL-l 33.2 65 0.0014 31.6 4.6 47 66-117 49-102 (178)
378 TIGR02149 glgA_Coryne glycogen 33.2 5.6E+02 0.012 26.4 12.5 108 33-154 230-352 (388)
379 PRK10060 RNase II stability mo 33.2 3.2E+02 0.007 31.6 11.0 102 46-150 544-656 (663)
380 cd06295 PBP1_CelR Ligand bindi 33.2 2.5E+02 0.0053 27.5 8.8 63 45-116 29-95 (275)
381 PRK13397 3-deoxy-7-phosphohept 33.1 1.6E+02 0.0034 30.5 7.5 68 66-141 139-224 (250)
382 cd06318 PBP1_ABC_sugar_binding 33.1 2.8E+02 0.0061 27.1 9.3 62 47-116 20-88 (282)
383 cd04736 MDH_FMN Mandelate dehy 32.9 3.1E+02 0.0067 29.9 10.0 87 47-139 227-321 (361)
384 cd06330 PBP1_Arsenic_SBP_like 32.9 2.8E+02 0.006 28.5 9.5 79 34-116 140-231 (346)
385 PRK07035 short chain dehydroge 32.8 4.4E+02 0.0095 25.6 10.5 83 30-116 6-93 (252)
386 cd04726 KGPDC_HPS 3-Keto-L-gul 32.8 1.9E+02 0.0041 27.7 7.7 73 64-140 11-87 (202)
387 cd00331 IGPS Indole-3-glycerol 32.7 4.4E+02 0.0095 25.7 10.4 51 83-136 50-100 (217)
388 PF00563 EAL: EAL domain; Int 32.6 74 0.0016 30.5 4.9 85 46-134 138-228 (236)
389 PRK12829 short chain dehydroge 32.6 2.3E+02 0.0049 27.7 8.4 82 31-116 10-94 (264)
390 PRK12726 flagellar biosynthesi 32.5 6.7E+02 0.015 27.9 12.5 104 32-136 234-349 (407)
391 cd06279 PBP1_LacI_like_3 Ligan 32.4 2E+02 0.0043 28.6 8.1 64 44-116 22-87 (283)
392 cd08170 GlyDH Glycerol dehydro 32.4 2.1E+02 0.0046 30.3 8.7 75 33-115 23-108 (351)
393 PRK06182 short chain dehydroge 32.4 3E+02 0.0064 27.4 9.4 79 32-116 3-82 (273)
394 PRK08340 glucose-1-dehydrogena 32.4 3.5E+02 0.0075 26.6 9.8 79 33-116 1-84 (259)
395 PRK15424 propionate catabolism 32.3 7.7E+02 0.017 28.3 13.5 72 31-103 13-103 (538)
396 PRK15454 ethanol dehydrogenase 32.3 1.8E+02 0.0039 31.7 8.3 63 33-100 50-125 (395)
397 PRK04338 N(2),N(2)-dimethylgua 32.2 2.8E+02 0.0062 30.2 9.7 78 33-120 82-162 (382)
398 PRK14722 flhF flagellar biosyn 32.2 3.8E+02 0.0083 29.3 10.7 88 33-122 168-261 (374)
399 PRK07067 sorbitol dehydrogenas 32.2 4.8E+02 0.01 25.5 10.7 80 32-115 6-87 (257)
400 PRK09140 2-dehydro-3-deoxy-6-p 32.1 3.9E+02 0.0084 26.5 9.9 75 52-135 100-177 (206)
401 PRK12723 flagellar biosynthesi 32.0 6.5E+02 0.014 27.6 12.4 102 32-136 206-319 (388)
402 cd06296 PBP1_CatR_like Ligand- 32.0 2.8E+02 0.006 27.0 8.9 63 45-116 18-86 (270)
403 PRK10909 rsmD 16S rRNA m(2)G96 32.0 5E+02 0.011 25.6 10.6 82 32-118 76-161 (199)
404 PRK09016 quinolinate phosphori 31.9 3.3E+02 0.0072 28.9 9.8 67 59-135 212-278 (296)
405 KOG2335 tRNA-dihydrouridine sy 31.9 3.8E+02 0.0082 29.3 10.3 102 33-136 118-232 (358)
406 TIGR01182 eda Entner-Doudoroff 31.8 4.3E+02 0.0094 26.4 10.2 91 51-147 4-96 (204)
407 PF03102 NeuB: NeuB family; I 31.8 1.8E+02 0.004 29.8 7.7 85 43-135 56-144 (241)
408 PRK03692 putative UDP-N-acetyl 31.7 3.4E+02 0.0074 27.8 9.7 76 31-113 104-187 (243)
409 PRK13608 diacylglycerol glucos 31.7 6.6E+02 0.014 26.8 12.4 63 79-154 274-338 (391)
410 PRK12727 flagellar biosynthesi 31.5 3.2E+02 0.0069 31.6 10.2 84 33-119 381-470 (559)
411 PRK07024 short chain dehydroge 31.5 5.1E+02 0.011 25.4 10.9 80 33-116 3-86 (257)
412 cd06292 PBP1_LacI_like_10 Liga 31.4 2.2E+02 0.0048 27.7 8.2 65 46-116 19-91 (273)
413 PRK05286 dihydroorotate dehydr 31.4 4.7E+02 0.01 27.9 11.1 59 94-153 276-341 (344)
414 cd06358 PBP1_NHase Type I peri 31.4 4.1E+02 0.0089 27.2 10.5 77 34-116 134-221 (333)
415 PF01993 MTD: methylene-5,6,7, 31.4 1.3E+02 0.0028 31.2 6.4 59 78-140 59-117 (276)
416 TIGR01214 rmlD dTDP-4-dehydror 31.4 3.8E+02 0.0083 26.6 10.0 52 34-87 1-59 (287)
417 COG1091 RfbD dTDP-4-dehydrorha 31.4 1.1E+02 0.0025 32.1 6.3 53 34-89 2-61 (281)
418 PF01081 Aldolase: KDPG and KH 31.4 1.4E+02 0.0031 29.6 6.7 93 50-147 3-96 (196)
419 cd01143 YvrC Periplasmic bindi 31.3 1.2E+02 0.0027 28.3 6.1 33 78-118 60-92 (195)
420 cd03807 GT1_WbnK_like This fam 31.3 5.1E+02 0.011 25.4 11.3 64 79-154 269-332 (365)
421 cd06342 PBP1_ABC_LIVBP_like Ty 31.3 5.6E+02 0.012 25.8 12.6 63 46-114 153-222 (334)
422 TIGR03704 PrmC_rel_meth putati 31.2 5E+02 0.011 26.3 10.9 52 32-86 110-161 (251)
423 PRK07807 inosine 5-monophospha 31.1 1.6E+02 0.0034 33.2 7.7 67 64-135 227-294 (479)
424 cd03313 enolase Enolase: Enola 31.0 3.7E+02 0.0081 29.5 10.5 104 39-146 210-344 (408)
425 cd04731 HisF The cyclase subun 30.9 1.7E+02 0.0036 29.3 7.2 70 62-136 26-99 (243)
426 PRK11572 copper homeostasis pr 30.9 3.4E+02 0.0074 28.1 9.5 91 40-135 98-196 (248)
427 cd01568 QPRTase_NadC Quinolina 30.9 2.4E+02 0.0052 29.2 8.5 94 34-136 153-254 (269)
428 PF00977 His_biosynth: Histidi 30.8 2.6E+02 0.0057 27.9 8.6 70 63-136 147-219 (229)
429 PRK06731 flhF flagellar biosyn 30.7 5.7E+02 0.012 26.6 11.2 54 33-87 104-163 (270)
430 cd06323 PBP1_ribose_binding Pe 30.6 3.3E+02 0.0071 26.3 9.1 68 40-116 10-88 (268)
431 COG1856 Uncharacterized homolo 30.6 4.1E+02 0.009 27.5 9.7 74 64-140 167-254 (275)
432 PRK13585 1-(5-phosphoribosyl)- 30.6 5.1E+02 0.011 25.6 10.7 68 64-136 150-221 (241)
433 PRK13398 3-deoxy-7-phosphohept 30.5 6.3E+02 0.014 26.2 11.8 88 48-139 126-234 (266)
434 PF11072 DUF2859: Protein of u 30.5 2.6E+02 0.0057 26.6 7.9 71 33-115 63-138 (142)
435 TIGR03572 WbuZ glycosyl amidat 30.5 3.3E+02 0.0071 26.9 9.2 68 64-136 31-102 (232)
436 PRK05437 isopentenyl pyrophosp 30.5 5.8E+02 0.013 27.4 11.7 89 46-139 176-293 (352)
437 TIGR01832 kduD 2-deoxy-D-gluco 30.4 5E+02 0.011 25.0 10.6 82 31-116 4-88 (248)
438 cd01537 PBP1_Repressors_Sugar_ 30.3 3.6E+02 0.0079 25.5 9.3 66 44-117 17-88 (264)
439 PRK08883 ribulose-phosphate 3- 30.3 3.5E+02 0.0076 27.2 9.4 84 50-137 100-195 (220)
440 PRK06806 fructose-bisphosphate 30.3 2.7E+02 0.0058 29.1 8.8 70 61-135 151-228 (281)
441 TIGR01949 AroFGH_arch predicte 30.3 3.6E+02 0.0078 27.3 9.7 51 78-135 169-225 (258)
442 cd06355 PBP1_FmdD_like Peripla 30.2 3.3E+02 0.0071 28.3 9.6 68 33-104 134-212 (348)
443 cd05014 SIS_Kpsf KpsF-like pro 30.2 2.1E+02 0.0045 25.1 7.0 90 39-139 9-100 (128)
444 TIGR03061 pip_yhgE_Nterm YhgE/ 30.1 1.3E+02 0.0029 28.2 6.0 51 31-84 42-102 (164)
445 cd06374 PBP1_mGluR_groupI Liga 30.0 2.7E+02 0.0058 30.6 9.3 25 79-103 244-268 (472)
446 cd02810 DHOD_DHPD_FMN Dihydroo 29.9 4.7E+02 0.01 26.7 10.5 40 94-134 230-269 (289)
447 cd04737 LOX_like_FMN L-Lactate 29.9 4.2E+02 0.0091 28.7 10.4 72 61-136 228-304 (351)
448 cd01838 Isoamyl_acetate_hydrol 29.8 3E+02 0.0065 25.4 8.4 39 78-118 63-117 (199)
449 cd01147 HemV-2 Metal binding p 29.8 1.4E+02 0.0029 29.5 6.4 40 70-117 68-107 (262)
450 COG0626 MetC Cystathionine bet 29.8 4.1E+02 0.0089 29.4 10.4 98 32-135 102-205 (396)
451 KOG1203 Predicted dehydrogenas 29.7 1.4E+02 0.003 33.2 6.8 73 29-103 76-149 (411)
452 cd02940 DHPD_FMN Dihydropyrimi 29.6 3.1E+02 0.0067 28.5 9.2 41 94-135 239-279 (299)
453 COG2070 Dioxygenases related t 29.6 3.5E+02 0.0076 29.1 9.7 81 48-134 119-210 (336)
454 PRK09522 bifunctional glutamin 29.6 80 0.0017 36.0 5.2 51 33-85 2-55 (531)
455 cd06334 PBP1_ABC_ligand_bindin 29.5 5.6E+02 0.012 26.9 11.3 67 44-116 156-229 (351)
456 cd01822 Lysophospholipase_L1_l 29.5 4.1E+02 0.0089 24.2 9.2 35 78-116 64-109 (177)
457 cd06267 PBP1_LacI_sugar_bindin 29.5 3.9E+02 0.0085 25.3 9.4 62 47-117 20-87 (264)
458 PRK00654 glgA glycogen synthas 29.5 6.3E+02 0.014 27.7 12.1 108 32-153 311-427 (466)
459 COG1748 LYS9 Saccharopine dehy 29.5 4.2E+02 0.009 29.3 10.4 53 33-86 2-56 (389)
460 cd03805 GT1_ALG2_like This fam 29.5 6.5E+02 0.014 26.0 11.9 108 32-154 245-364 (392)
461 cd06281 PBP1_LacI_like_5 Ligan 29.4 3.8E+02 0.0082 26.1 9.5 63 46-116 19-87 (269)
462 PRK10867 signal recognition pa 29.4 5.9E+02 0.013 28.4 11.7 84 32-118 129-225 (433)
463 PRK08862 short chain dehydroge 29.4 4.8E+02 0.01 25.6 10.1 83 30-116 3-91 (227)
464 cd06388 PBP1_iGluR_AMPA_GluR4 29.4 5.1E+02 0.011 27.7 11.0 67 34-104 126-202 (371)
465 PRK05693 short chain dehydroge 29.3 3.4E+02 0.0075 26.9 9.2 76 34-116 3-80 (274)
466 TIGR00959 ffh signal recogniti 29.3 5.1E+02 0.011 28.8 11.2 83 32-117 128-223 (428)
467 TIGR03569 NeuB_NnaB N-acetylne 29.3 5.1E+02 0.011 27.8 10.8 90 66-159 149-259 (329)
468 cd08179 NADPH_BDH NADPH-depend 29.2 1.7E+02 0.0036 31.5 7.3 63 33-100 24-100 (375)
469 cd01541 PBP1_AraR Ligand-bindi 29.2 3.4E+02 0.0074 26.5 9.1 67 44-116 17-91 (273)
470 PRK03522 rumB 23S rRNA methylu 29.2 2.9E+02 0.0064 28.9 9.0 76 33-117 196-275 (315)
471 PF06925 MGDG_synth: Monogalac 29.2 2E+02 0.0044 27.0 7.1 63 68-137 81-144 (169)
472 cd06366 PBP1_GABAb_receptor Li 29.1 3.3E+02 0.0072 28.0 9.4 57 44-104 151-216 (350)
473 PRK12429 3-hydroxybutyrate deh 29.1 4.3E+02 0.0093 25.5 9.7 81 32-116 4-89 (258)
474 PF05582 Peptidase_U57: YabG p 29.1 4.3E+02 0.0094 28.0 9.9 52 32-85 105-161 (287)
475 cd03816 GT1_ALG1_like This fam 29.0 7.5E+02 0.016 26.6 12.7 105 32-154 269-381 (415)
476 PRK10742 putative methyltransf 29.0 2.4E+02 0.0051 29.3 7.9 57 32-91 110-177 (250)
477 PRK11557 putative DNA-binding 28.9 4.2E+02 0.0091 26.8 9.9 85 32-122 130-216 (278)
478 PRK06172 short chain dehydroge 28.8 4.6E+02 0.01 25.5 9.9 82 31-116 6-92 (253)
479 cd02801 DUS_like_FMN Dihydrour 28.7 5.5E+02 0.012 24.9 11.1 63 67-134 142-210 (231)
480 cd02808 GltS_FMN Glutamate syn 28.7 3.5E+02 0.0076 29.5 9.8 69 64-134 226-311 (392)
481 cd08551 Fe-ADH iron-containing 28.6 3.2E+02 0.0069 29.1 9.3 63 33-100 24-99 (370)
482 PRK14329 (dimethylallyl)adenos 28.6 3E+02 0.0065 30.7 9.4 97 39-151 34-138 (467)
483 PRK02645 ppnK inorganic polyph 28.5 3.8E+02 0.0083 28.2 9.7 104 31-153 2-114 (305)
484 PRK13143 hisH imidazole glycer 28.5 1.4E+02 0.0031 29.0 6.2 44 33-84 1-44 (200)
485 cd01141 TroA_d Periplasmic bin 28.4 1.6E+02 0.0035 27.7 6.3 32 78-116 69-100 (186)
486 PRK08999 hypothetical protein; 28.4 2.8E+02 0.006 28.7 8.6 67 61-134 232-305 (312)
487 TIGR01579 MiaB-like-C MiaB-lik 28.4 3.8E+02 0.0083 29.1 10.0 93 41-149 9-105 (414)
488 cd06343 PBP1_ABC_ligand_bindin 28.3 6.3E+02 0.014 26.0 11.3 56 45-104 161-223 (362)
489 PRK08857 para-aminobenzoate sy 28.2 70 0.0015 31.0 3.9 48 35-85 2-50 (193)
490 PRK12653 fructose-6-phosphate 28.2 2.9E+02 0.0062 27.9 8.3 85 51-138 98-188 (220)
491 cd04739 DHOD_like Dihydroorota 28.2 4.2E+02 0.0091 28.0 10.0 58 94-154 226-290 (325)
492 PLN02366 spermidine synthase 28.1 3.7E+02 0.008 28.4 9.5 68 33-102 116-194 (308)
493 PTZ00314 inosine-5'-monophosph 28.1 1.6E+02 0.0034 33.4 7.1 55 78-135 253-308 (495)
494 PRK10481 hypothetical protein; 28.1 3.3E+02 0.0071 27.8 8.7 73 34-112 131-210 (224)
495 PF01645 Glu_synthase: Conserv 28.0 3.6E+02 0.0078 29.5 9.5 74 61-135 211-301 (368)
496 PRK07455 keto-hydroxyglutarate 27.9 3E+02 0.0065 26.8 8.2 66 62-134 112-177 (187)
497 PF07279 DUF1442: Protein of u 27.9 3E+02 0.0065 28.0 8.3 74 33-115 70-148 (218)
498 TIGR02189 GlrX-like_plant Glut 27.9 3E+02 0.0066 23.8 7.5 77 51-130 4-85 (99)
499 KOG3040 Predicted sugar phosph 27.9 81 0.0017 32.2 4.2 64 32-95 39-106 (262)
500 TIGR00417 speE spermidine synt 27.8 5.1E+02 0.011 26.4 10.3 54 33-89 97-156 (270)
No 1
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.92 E-value=9.5e-25 Score=227.76 Aligned_cols=183 Identities=23% Similarity=0.345 Sum_probs=135.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-CE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCS-YQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g-~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
++|||||||++.+|..|+++|...+ ++ |.++.|+.+|++++... .||||+||++||.|||+++++.|++. .++
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~--~PDVi~ld~emp~mdgl~~l~~im~~---~p~ 75 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKL--KPDVITLDVEMPVMDGLEALRKIMRL---RPL 75 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc--CCCEEEEecccccccHHHHHHHHhcC---CCC
Confidence 5799999999999999999999998 55 55999999999999987 89999999999999999999999975 789
Q ss_pred eEEEEecC--CCHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCCcc
Q 008761 110 PVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLRT--NELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNST 185 (554)
Q Consensus 110 PIIVLSs~--~d~e~~~eAL~aGA~DyL~KP~~~--eeL~~~L~~llr~~rl~~~~~~~~~~~~~~~v~ssps~a~s~~~ 185 (554)
||||+|+. ...+...+||++||.||+.||... ..+....+.+..+.+.........+..
T Consensus 76 pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~~l~~kv~~~~~~~~~~l~~----------------- 138 (350)
T COG2201 76 PVIMVSSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAELLIEKVRAAARQNRKSLRT----------------- 138 (350)
T ss_pred cEEEEeccccccHHHHHHHHhcCcceeecCCCcccccchHHHHHHHHHHHHHHhhcccccccc-----------------
Confidence 99999974 347789999999999999999853 333333333333333222111010000
Q ss_pred eeeccCCccccccCCCCCCCCCCCcccCCCCccEEEEEccCcchhcccccccccCCCCCc-ccccc
Q 008761 186 TLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASECGPDVP-GISDR 250 (554)
Q Consensus 186 vLi~get~~~~~~~~~~~~~~~t~~e~~s~~~~iVaIGASTGGp~AL~~I~L~~lPaD~P-pil~~ 250 (554)
... ...+ ...+........++|+||+|||||+||+.| |..||+||| |++.-
T Consensus 139 ----~~~-------~~~~--~~~~~~~~~~~~~iV~IGaStGGp~AL~~i-l~~lP~~~p~pvvIv 190 (350)
T COG2201 139 ----PEP-------PRAP--AFRPVKPGPAARKIVAIGASTGGPAALRAV-LPALPADFPAPVVIV 190 (350)
T ss_pred ----cCC-------CCcc--ccCCCCCCCCCccEEEEEeCCCCHHHHHHH-HHhCCCCCCCCEEEE
Confidence 000 0000 000111133557899999999999999999 999999999 76554
No 2
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-21 Score=210.69 Aligned_cols=162 Identities=27% Similarity=0.473 Sum_probs=142.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++.+||||||++.+|..|..+|+..||+|..+.++.+|++++... .|||||+|+.||++||++++++|++.. +.+|
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~p 78 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRD--PDLP 78 (464)
T ss_pred CcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhC--CCCC
Confidence 356899999999999999999999999999999999999999876 799999999999999999999999875 8899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhhh---hccccccccccCCCC---------
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEK---NILSYDFDLVASDPS--------- 178 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~~~~~~---~~~~~~~~~v~ssps--------- 178 (554)
|||||++.+.+.+++|++.||.|||.|||+.+.|...+++.+...+....... ........+++.++.
T Consensus 79 VI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~ 158 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIA 158 (464)
T ss_pred EEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987665432221 112234567777776
Q ss_pred -CCCCCcceeeccCCcccc
Q 008761 179 -DANTNSTTLFSDDTDDKS 196 (554)
Q Consensus 179 -~a~s~~~vLi~get~~~~ 196 (554)
.+.+++++|+.||+++-+
T Consensus 159 kvA~s~a~VLI~GESGtGK 177 (464)
T COG2204 159 KVAPSDASVLITGESGTGK 177 (464)
T ss_pred HHhCCCCCEEEECCCCCcH
Confidence 478899999999999854
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=4.5e-21 Score=191.11 Aligned_cols=120 Identities=28% Similarity=0.462 Sum_probs=112.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++.++..|...|+..||+|..+.++.+|++.+... ||+||+|++||++||+++|++|++. ....+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEE
Confidence 4899999999999999999999999999999999999998643 9999999999999999999999965 45778999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
|+|+..+....+.++++||+|||+|||++.||.++++.++++..
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 99999999999999999999999999999999999999988653
No 4
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.81 E-value=2.2e-19 Score=193.84 Aligned_cols=122 Identities=20% Similarity=0.420 Sum_probs=113.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh--CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVK--CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~--~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
|.+||||||++.+|+.|+.+|.. .|++|+ +|.||.+|++.+.+. .|||||+|+.||+|||+++++.|++.. +.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~--~pDiviTDI~MP~mdGLdLI~~ike~~--p~ 76 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET--QPDIVITDINMPGMDGLDLIKAIKEQS--PD 76 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 57999999999999999999964 488866 999999999999987 899999999999999999999999865 88
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
+.+||+|++.+.+.+.+||++|+.|||+||++.++|...+.++......
T Consensus 77 ~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~ 125 (475)
T COG4753 77 TEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEE 125 (475)
T ss_pred ceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988776544
No 5
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.79 E-value=4.2e-18 Score=177.31 Aligned_cols=177 Identities=18% Similarity=0.248 Sum_probs=126.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHh-hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 33 VRILLCDNDSNSSDAVFSLLV-KCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~-~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++||||||++..+..|..+|. ..+++|. .+.++.+|++.+... .||+|++|+.||+|+|++++++|+.. .++|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~--~pDlVllD~~mp~~~G~e~l~~l~~~---~~~p 75 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQ--PPDVILMDLEMPRMDGVEATRRIMAE---RPCP 75 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhcc--CCCEEEEcCCCCCCCHHHHHHHHHHH---CCCc
Confidence 489999999999999999995 5578876 789999999999876 79999999999999999999999874 4689
Q ss_pred EEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCCcce
Q 008761 111 VIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNSTT 186 (554)
Q Consensus 111 IIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~llr~~rl~~~~~~~~~~~~~~~v~ssps~a~s~~~v 186 (554)
||++++... .....++++.||.+||.||+. ...+......++.+.+........ .+.. ..
T Consensus 76 vivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~~~~~-----------~~~~--~~--- 139 (337)
T PRK12555 76 ILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGRLLGR-----------RLAP--AA--- 139 (337)
T ss_pred EEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhhcccc-----------cCCC--cc---
Confidence 999998643 567789999999999999992 222222333333333222110000 0000 00
Q ss_pred eeccCCccccccCCCCCCCCCCCcccCCCCccEEEEEccCcchhcccccccccCCCCCc-ccc
Q 008761 187 LFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASECGPDVP-GIS 248 (554)
Q Consensus 187 Li~get~~~~~~~~~~~~~~~t~~e~~s~~~~iVaIGASTGGp~AL~~I~L~~lPaD~P-pil 248 (554)
. .... ... ......++++||+||||++||..+ |..+|+++| +++
T Consensus 140 -------~---~~~~------~~~-~~~~~~~v~~ig~s~gg~~al~~l-l~~l~~~~~~~iv 184 (337)
T PRK12555 140 -------A---PAAA------SAA-PFRTTPRLVAIGASAGGPAALAVL-LGGLPADFPAAIV 184 (337)
T ss_pred -------c---CCCC------CCC-CCCCCceEEEEEeCcCCHHHHHHH-HHhCCCCCCCcEE
Confidence 0 0000 000 001224789999999999999999 999999998 344
No 6
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.79 E-value=1.2e-18 Score=167.36 Aligned_cols=121 Identities=24% Similarity=0.446 Sum_probs=112.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
..-|.|||||..+|+.|..+|++.||+|.++.++.+.|+..... .|-++|+|+.||+|+|+++..+|.+.. ..+||
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~--~pGclllDvrMPg~sGlelq~~L~~~~--~~~PV 79 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD--RPGCLLLDVRMPGMSGLELQDRLAERG--IRLPV 79 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCC--CCCeEEEecCCCCCchHHHHHHHHhcC--CCCCE
Confidence 56799999999999999999999999999999999999996544 799999999999999999999999876 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
|+||++.+..+.++||+.||.|||.|||+...|+..+++.+++..
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~ 124 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDA 124 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877643
No 7
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.78 E-value=3.4e-18 Score=166.88 Aligned_cols=123 Identities=20% Similarity=0.402 Sum_probs=113.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++||||||++.+.+.-..+++.. ||.++ +|.++++|..++... +|||||+|+.||+.+|+++|..|++.+ .++-
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~--~pDLILLDiYmPd~~Gi~lL~~ir~~~--~~~D 76 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEF--KPDLILLDIYMPDGNGIELLPELRSQH--YPVD 76 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhh--CCCEEEEeeccCCCccHHHHHHHHhcC--CCCC
Confidence 58999999999999999999876 78755 999999999999987 899999999999999999999999875 8899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~~ 159 (554)
||++|+-.+.+.+.+||+.||.|||.|||..+.|...|.+..++++.+.
T Consensus 77 VI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~ 125 (224)
T COG4565 77 VIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALE 125 (224)
T ss_pred EEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999887776654
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.78 E-value=9.4e-18 Score=144.25 Aligned_cols=111 Identities=32% Similarity=0.564 Sum_probs=105.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEE
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~-eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIV 113 (554)
||||||++..+..+..+|...|+ +|..+.++.+|++.+... .||+|++|+.||+++|+++++.|+... +.+|||+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH--PPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS--TESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc--CceEEEEEeeecccccccccccccccc--ccccEEE
Confidence 79999999999999999999999 899999999999999887 799999999999999999999999876 7899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008761 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (554)
Q Consensus 114 LSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~ 149 (554)
+|...+.....+++++|+++||.||++.++|.+.|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999999988764
No 9
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.76 E-value=3.5e-17 Score=171.35 Aligned_cols=106 Identities=25% Similarity=0.449 Sum_probs=94.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
|++++||||||++.++..|..+|... ++++. .+.++.++++.+... .||+|++|+.||+++|++++++|++.. .
T Consensus 1 m~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~--~~DlVllD~~mp~~dgle~l~~i~~~~--~ 76 (354)
T PRK00742 1 MMKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKL--NPDVITLDVEMPVMDGLDALEKIMRLR--P 76 (354)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhh--CCCEEEEeCCCCCCChHHHHHHHHHhC--C
Confidence 45789999999999999999999876 78877 899999999998766 799999999999999999999999764 3
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC
Q 008761 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR 140 (554)
Q Consensus 108 ~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~ 140 (554)
+|||++|+.. ......++++.||+|||.||+.
T Consensus 77 -~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 -TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred -CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 8999999753 3466789999999999999994
No 10
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.74 E-value=6.5e-19 Score=132.45 Aligned_cols=44 Identities=57% Similarity=1.011 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhccCCCCccchhhhhhhhhcCCCccceeeecc
Q 008761 471 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 514 (554)
Q Consensus 471 r~~~~~r~~~k~~~r~~~k~i~y~~rk~~a~~r~r~~g~f~~~~ 514 (554)
|+++|+||++||++|+|+|+|+|+|||.+||.|||||||||+..
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~ 44 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS 44 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence 67899999999999999999999999999999999999999865
No 11
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.72 E-value=3.2e-16 Score=137.94 Aligned_cols=120 Identities=27% Similarity=0.449 Sum_probs=104.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHH-HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPR-QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~-EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
+...+||||||++..+..+..+|...|+.|..+.++. +|++.+.... .||+|++|+.||++||++++++|+.. ...
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~--~~~ 79 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRAR--GPN 79 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhC--CCC
Confidence 4578999999999999999999999999999999995 9999998651 39999999999999999999999975 356
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNE-LLNLWTHMW 152 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~ee-L~~~L~~ll 152 (554)
+|||++|++........++..|+++||.||+...+ |...+..++
T Consensus 80 ~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 80 IPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred CCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 78899999888777778899999999999977666 666666443
No 12
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.71 E-value=1.7e-16 Score=156.13 Aligned_cols=119 Identities=23% Similarity=0.391 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCS-YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g-~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++||||||++.+|..|..+|...+ ++|+ .+.++.++++.+... .|||||+|+.||+++|+++++.|++.. ++++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~--~pdvvl~Dl~mP~~~G~e~~~~l~~~~--p~~~ 76 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAREL--KPDVVLLDLSMPGMDGLEALKQLRARG--PDIK 76 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhc--CCCEEEEcCCCCCCChHHHHHHHHHHC--CCCc
Confidence 479999999999999999998775 8866 888999999998766 899999999999999999999999654 8889
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
||++|.+.+...+.+++++||++|+.|..+.++|...|+.++...
T Consensus 77 vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 77 VVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999987654
No 13
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.71 E-value=5.7e-17 Score=168.55 Aligned_cols=122 Identities=28% Similarity=0.474 Sum_probs=114.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh-ccCCCCc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR-DKELQRI 109 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~-~~~~~~i 109 (554)
.+++||+|||.+..+..+..+|+..+|.|..|.+|++|++.+..+ .||+||+|++||+|||+++|.+|+. .+.+..+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~--~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE--PPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc--CCceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 578999999999999999999999999999999999999999876 6999999999999999999999999 7777889
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+.+...+|+..||+|||.||++..+|..++...+..
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~ 135 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQL 135 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888765543
No 14
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.69 E-value=7.6e-16 Score=150.92 Aligned_cols=123 Identities=20% Similarity=0.337 Sum_probs=110.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++||||||++.++..+..+|... ++. |..+.++.+|++.+... .|||||+|+.||+++|+++++.|+... +++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~--~pdlvllD~~mp~~~gle~~~~l~~~~--~~~ 79 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF--KPGLILLDNYLPDGRGINLLHELVQAH--YPG 79 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCC
Confidence 589999999999999999999864 785 66999999999999876 799999999999999999999998743 568
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~ 158 (554)
+||++|+..+.....+++++||++||.||++.++|...|+++.......
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~ 128 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHML 128 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887765543
No 15
>PLN03029 type-a response regulator protein; Provisional
Probab=99.68 E-value=1.7e-15 Score=149.71 Aligned_cols=125 Identities=30% Similarity=0.521 Sum_probs=109.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcC------------------CCceEEEEecCCCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEG------------------SDIDLILAEVDLPMT 91 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~------------------~~PDLILLDi~MP~m 91 (554)
+.+++||||||+...+..|..+|...||+|.++.++.+|++.+.... ..+||||+|+.||++
T Consensus 6 ~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~ 85 (222)
T PLN03029 6 ESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGM 85 (222)
T ss_pred CCCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCC
Confidence 35789999999999999999999999999999999999999986431 135799999999999
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+|+++++.|+.......+|||++|+........+++++||++||.||+...+|...+..+++.
T Consensus 86 ~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~ 148 (222)
T PLN03029 86 TGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKT 148 (222)
T ss_pred CHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHH
Confidence 999999999976444679999999999999999999999999999999999987776666544
No 16
>PRK11173 two-component response regulator; Provisional
Probab=99.67 E-value=1.9e-15 Score=146.99 Aligned_cols=119 Identities=20% Similarity=0.413 Sum_probs=110.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...+||||||++..+..|...|+..|++|..+.++.++++.+... .||+|++|+.||+++|+++++.|+.. ..+|
T Consensus 2 ~~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~---~~~p 76 (237)
T PRK11173 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQ---ANVA 76 (237)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcC---CCCC
Confidence 456999999999999999999999999999999999999999766 79999999999999999999999864 5789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
||++|+..+......+++.||+|||.||++..+|...+..++++
T Consensus 77 ii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 77 LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999988899999999999999999999999999888765
No 17
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.67 E-value=9.7e-16 Score=164.73 Aligned_cols=125 Identities=25% Similarity=0.478 Sum_probs=118.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...+||||||+...+..|..+|...||+|..+.++.+|+..+.+. .||+||+|+.||++||+++|++++.......+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 468999999999999999999999999999999999999999876 899999999999999999999999988888999
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
||++++..+.....+|++.|+.|||.||+...+|..++++.+++.+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999888887664
No 18
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.66 E-value=2.5e-15 Score=143.93 Aligned_cols=117 Identities=25% Similarity=0.367 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..|...|...|+++..+.++.+++..+... .||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~---~~~pvi 76 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVI 76 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 5899999999999999999999999999999999999988765 79999999999999999999999863 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++|+..+.+...+++++||+|||.||+..++|...+..++++
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998887764
No 19
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.66 E-value=2.8e-15 Score=143.73 Aligned_cols=118 Identities=21% Similarity=0.400 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++..+..+...|...|++|..+.++.+|++.+... .||+|++|+.||+++|+++++.|+... +.+|||
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~l~~~lr~~~--~~~pii 76 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 3799999999999999999999999999999999999998766 799999999999999999999998753 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++|+..+......++++||+|||.||++..+|...+..++++
T Consensus 77 ~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998887654
No 20
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.65 E-value=4.6e-15 Score=142.79 Aligned_cols=121 Identities=29% Similarity=0.451 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
..+||||||++..+..|...|...|+++..+.++.++++.+... .||+||+|+.||+++|+++++.|+.....+.+||
T Consensus 2 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCE
Confidence 36899999999999999999998899999999999999998765 7999999999999999999999987543467899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++|+..+.....+++++||++||.||++.++|...+..++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999887654
No 21
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.65 E-value=4.9e-15 Score=142.45 Aligned_cols=117 Identities=25% Similarity=0.451 Sum_probs=108.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIV 113 (554)
+||||||++..+..|...|...|+.|..+.++.++++.+... .||+||+|+.||+++|+++++.|+... +.+|||+
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~--~~~pii~ 77 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPILL 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEEE
Confidence 799999999999999999998899999999999999988765 799999999999999999999999753 6789999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 114 LSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+|+..+.+...+++++||+|||.||++..+|...+..++++
T Consensus 78 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998887653
No 22
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.65 E-value=5.6e-15 Score=140.11 Aligned_cols=118 Identities=27% Similarity=0.468 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++..+..|...|...|+.|..+.++.++++.+... .||+|++|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~--~~~pii 76 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDEDGLHLLRRWRQKK--YTLPVL 76 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 4799999999999999999999999999999999999998765 799999999999999999999998753 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++|+..+.....+++++||++||.||++.++|...+..++++
T Consensus 77 ~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 77 ILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988887654
No 23
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.65 E-value=5.6e-15 Score=140.19 Aligned_cols=121 Identities=31% Similarity=0.483 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
..+||||||++..+..|...|...|++|..+.++.+++..+... .||+|++|+.||+++|+++++.|+.....+.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER--GPDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhc--CCCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 36899999999999999999998899999999999999998766 7999999999999999999999987543467899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++|+..+.....+++++||++||.||+..++|...+..++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999989999999999999999999999999988877654
No 24
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.64 E-value=6.2e-15 Score=140.85 Aligned_cols=119 Identities=22% Similarity=0.404 Sum_probs=110.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
.++||||||++..+..+...|...|++|..+.++.++++.+... .||+|++|+.||+++|+++++.|+.. ..+||
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~---~~~~i 76 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSR---STVGI 76 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhC---CCCCE
Confidence 46899999999999999999999999999999999999998765 79999999999999999999999874 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|++++..+.....+++++||+|||.||++..+|...+..++++.
T Consensus 77 i~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 77 ILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred EEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999889999999999999999999999999998887654
No 25
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.64 E-value=5.9e-15 Score=140.54 Aligned_cols=121 Identities=23% Similarity=0.393 Sum_probs=109.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|.+++||||||++..+..+...|...|++|..+.++.+++..+... .||+|++|+.||+++|+++++.|+... +.+
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~ 76 (228)
T PRK11083 1 MQQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFH--PAL 76 (228)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCC
Confidence 3457999999999999999999998899999999999999988765 799999999999999999999999753 678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+......++.+||++||.||++..+|...+..++++
T Consensus 77 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 77 PVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred CEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 999999998888889999999999999999999999988876654
No 26
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.64 E-value=8.4e-15 Score=144.65 Aligned_cols=123 Identities=20% Similarity=0.386 Sum_probs=107.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++||||||++.++..+..+|... ++.+. .+.++.++++.+......|||||+|+.||+++|+++++.|+... +.+
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~--~~~ 78 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKS 78 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhC--CCC
Confidence 368999999999999999999864 67654 88999999998864223699999999999999999999998754 678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
|||++|+..+.....++++.||.+||.||++.++|...+..++....
T Consensus 79 ~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~~ 125 (239)
T PRK10430 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKM 125 (239)
T ss_pred CEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987665443
No 27
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.63 E-value=1e-14 Score=138.41 Aligned_cols=118 Identities=32% Similarity=0.466 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++.++..|...|...|+++..+.++.+++..+... .||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~--~~~~ii 76 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKG--QREPVL 76 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 4899999999999999999998899999999999999988765 799999999999999999999999753 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++|+..+.....+++.+||++||.||++.++|...+..++++
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (219)
T PRK10336 77 ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999888877654
No 28
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.63 E-value=1e-14 Score=141.87 Aligned_cols=117 Identities=21% Similarity=0.339 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..|...|...|++|..+.++.++++.+... .||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~~~~~ir~~---~~~pii 76 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE--QPDLVLLDIMLPGKDGMTICRDLRPK---WQGPIV 76 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 4899999999999999999999999999999999999998765 79999999999999999999999873 467999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++++..+.....+++++||+|||.||+...+|...+..++++
T Consensus 77 ~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 77 LLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999988888888999999999999999999999998887765
No 29
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.63 E-value=1.1e-14 Score=141.31 Aligned_cols=119 Identities=29% Similarity=0.446 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
..+||||||++..+..|...|...|++|..+.++.++++.+... .||+||+|+.||+++|+++++.|+... +.+||
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~--~~~pi 80 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQN--NPTPI 80 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 56899999999999999999999999999999999999998765 799999999999999999999998753 67899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++++..+......++.+||+|||.||++.++|...+..++++
T Consensus 81 i~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 81 IMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred EEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887754
No 30
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.62 E-value=1.7e-14 Score=138.96 Aligned_cols=121 Identities=28% Similarity=0.469 Sum_probs=110.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+.+++||||||++..+..|...|...+++|..+.++.+++..+... .||+|++|+.||+++|+++++.|+.. +.+
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~---~~~ 78 (240)
T CHL00148 4 NSKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKE---SDV 78 (240)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCC
Confidence 3467999999999999999999998899999999999999988765 79999999999999999999999864 578
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|||++|+..+.....+++++||++||.||++.++|...+..++++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 79 PIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred cEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999888999999999999999999999999988876543
No 31
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.62 E-value=1.5e-14 Score=138.72 Aligned_cols=117 Identities=33% Similarity=0.512 Sum_probs=106.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..|...|...|+.|..+.++.++++.+. . .||+||+|+.||+++|+++++.|+... .+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~--~~d~vl~d~~~~~~~g~~~~~~l~~~~---~~~ii 75 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-D--SIDLLLLDVMMPKKNGIDTLKELRQTH---QTPVI 75 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-c--CCCEEEEeCCCCCCcHHHHHHHHHhcC---CCcEE
Confidence 58999999999999999999988999999999999999875 3 699999999999999999999999753 38999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
++|+..+.....+++++||++||.||++.++|...+..++++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 76 MLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999988888999999999999999999999999998877643
No 32
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.62 E-value=1.5e-14 Score=141.54 Aligned_cols=117 Identities=26% Similarity=0.463 Sum_probs=106.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..|...|...||.|..+.++.++++.+... .||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii 76 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASE--TVDVVVVDLNLGREDGLEIVRSLATK---SDVPII 76 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEE
Confidence 3899999999999999999999999999999999999998765 79999999999999999999999864 578999
Q ss_pred EEecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 113 MMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~-~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++|+. .+.....+++++||++||.||++..+|...++.++++
T Consensus 77 ~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 77 IISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred EEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 99985 4666778999999999999999999999998887765
No 33
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.62 E-value=1.9e-14 Score=138.03 Aligned_cols=118 Identities=26% Similarity=0.403 Sum_probs=108.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CcHHHHHHHHHhccCCCCceE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~--mDGlElLr~Ir~~~~~~~iPI 111 (554)
+||||||++.++..+...|...||+|..+.++.+++..+... .||+|++|+.||+ .+|+++++.|+... +.+||
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~~~g~~~~~~i~~~~--~~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR--LPDLAIIDIGLGEEIDGGFMLCQDLRSLS--ATLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC--CCCEEEEECCCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 699999999999999999998899999999999999998766 7999999999998 58999999998753 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|++|+..+......++++||++||.||+..++|...+..++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 78 IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998887654
No 34
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.61 E-value=1.9e-14 Score=155.80 Aligned_cols=121 Identities=26% Similarity=0.430 Sum_probs=111.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+.+||||||++.++..|..+|...||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.|+... +.+|
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~--~~DlvllD~~lp~~dgl~~l~~ir~~~--~~~p 77 (469)
T PRK10923 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK--TPDVLLSDIRMPGMDGLALLKQIKQRH--PMLP 77 (469)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEECCCCCCCCHHHHHHHHHhhC--CCCe
Confidence 457999999999999999999999999999999999999999766 799999999999999999999998754 6789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
||++|+..+.+...+++++||.+||.||+..++|...+..++...
T Consensus 78 vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 78 VIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877643
No 35
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.61 E-value=1.8e-15 Score=153.56 Aligned_cols=121 Identities=21% Similarity=0.402 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++|+||||+..+...|..+|++.|.++..|....+|++.+... +||||++|+.||+|+|++++++++... +.+|||
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~ngiefaeQvr~i~--~~v~ii 76 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPII 76 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCccHHHHHHHHHHhh--ccCcEE
Confidence 5899999999999999999999998888999999999999987 899999999999999999999999875 889999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~~ 159 (554)
++|++.. .+..++..-++|||+||++.+.|..+|.++.++....+
T Consensus 77 fIssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~~~ 121 (361)
T COG3947 77 FISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELTA 121 (361)
T ss_pred EEecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhccccccc
Confidence 9999875 56677888889999999999999999998876555443
No 36
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.60 E-value=2.3e-14 Score=138.87 Aligned_cols=121 Identities=14% Similarity=0.322 Sum_probs=107.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEecCCCC---CcHHHHHHHHHhcc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSY-Q-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPM---TKGLKMLKYITRDK 104 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~-e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~---mDGlElLr~Ir~~~ 104 (554)
|.+++||||||++..+..|..+|...++ . |..+.++.++++.+... .||+||+|+.||+ ++|++++++|+...
T Consensus 1 m~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~DlvllD~~l~~~~~~~g~~~~~~l~~~~ 78 (216)
T PRK10840 1 MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKL--DAHVLITDLSMPGDKYGDGITLIKYIKRHF 78 (216)
T ss_pred CCceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhC--CCCEEEEeCcCCCCCCCCHHHHHHHHHHHC
Confidence 4468999999999999999999987654 4 56899999999998765 7999999999999 59999999998753
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+.+|||++|...+.....++++.||++||.||...++|...++.++..
T Consensus 79 --~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 79 --PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred --CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 678999999999999999999999999999999999999999887654
No 37
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.60 E-value=2.7e-14 Score=136.12 Aligned_cols=117 Identities=30% Similarity=0.461 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++..+..+...|...|+.|..+.++.+++..+... .||+|++|+.||+++|+++++.|+.. ..+|||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii 75 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTA---KQTPVI 75 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 3799999999999999999998899999999999999998765 79999999999999999999999864 468999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++++..+.+...+++++||++||.||+...+|...+..++++
T Consensus 76 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988876643
No 38
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.60 E-value=2.3e-14 Score=153.31 Aligned_cols=121 Identities=30% Similarity=0.479 Sum_probs=111.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+++||||||++..+..|...|...|+.|..+.++.+++..+... .||+||+|+.||+++|+++++.|+... +.+|
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~--~~~~ 79 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALN--PAIP 79 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCe
Confidence 468999999999999999999999999999999999999998765 799999999999999999999998754 7789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
||++|++.+.+...++++.||.+||.||++.++|...+..++...
T Consensus 80 vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 80 VLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877643
No 39
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.59 E-value=3.3e-14 Score=141.67 Aligned_cols=120 Identities=19% Similarity=0.337 Sum_probs=106.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++||||||++.++..+...|... ++.+. .+.++.++++.+... .||+||+|+.||+++|+++++.|+.......+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQ--QPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 579999999999999999999864 56654 799999999999876 79999999999999999999999976433348
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|||++|+..+.....++++.|+++||.||++.++|...+..++.
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998887654
No 40
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.58 E-value=2.2e-14 Score=165.55 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=111.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
..++||||||++..+..+..+|...|+.|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|++......+|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR--PFDLILMDIQMPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCC
Confidence 357999999999999999999999999999999999999999876 899999999999999999999999765456899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
||++|+....+...+++++|+++||.||++..+|...+.+++.
T Consensus 744 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 744 IIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999888877654
No 41
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.57 E-value=5.8e-14 Score=132.83 Aligned_cols=116 Identities=33% Similarity=0.529 Sum_probs=106.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEE
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVL 114 (554)
||||||++..+..|...|...|+++..+.++.++++.+... .||+|++|+.||+++|+++++.|+... +.+|||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~iivl 76 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD--DYDLIILDVMLPGMDGWQILQTLRRSG--KQTPVLFL 76 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHccC--CCCcEEEE
Confidence 68999999999999999998899999999999999998765 799999999999999999999998653 67899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 115 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 115 Ss~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|...+.....+++.+||++||.||+..++|...+..++++
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988877654
No 42
>PRK09483 response regulator; Provisional
Probab=99.57 E-value=6.8e-14 Score=133.06 Aligned_cols=120 Identities=19% Similarity=0.340 Sum_probs=108.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|++||||||++..+..|..+|... ++.+. .+.++.++++.+... .||+||+|+.+|+++|+++++.|+... +.+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~ 76 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRYT--PDV 76 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHC--CCC
Confidence 469999999999999999999874 78876 789999999999866 799999999999999999999998754 679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|||++|...+......++..||++||.||++.++|...++.+++..
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 77 KIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999889999999999999999999999999998876643
No 43
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.57 E-value=4e-14 Score=165.99 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=112.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|++.. ..+|
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~--~~DlVl~D~~mP~mdG~el~~~ir~~~--~~~p 875 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLTDVNMPNMDGYRLTQRLRQLG--LTLP 875 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 457999999999999999999999999999999999999999876 799999999999999999999999864 6799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
||++|+....+...+++++|+++||.||++.++|...+..+..+.
T Consensus 876 II~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 876 VIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988776543
No 44
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.57 E-value=3.3e-14 Score=132.58 Aligned_cols=112 Identities=18% Similarity=0.387 Sum_probs=106.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIV 113 (554)
..||||||..+...|.+.++..||+|.+|.+.++|+..++.. .|.-.++|+.|.+.+|+.+++.|++.. .+..|||
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~--~PayAvvDlkL~~gsGL~~i~~lr~~~--~d~rivv 86 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA--PPAYAVVDLKLGDGSGLAVIEALRERR--ADMRIVV 86 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcC--CCceEEEEeeecCCCchHHHHHHHhcC--CcceEEE
Confidence 799999999999999999999999999999999999999876 899999999999999999999999875 8899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008761 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (554)
Q Consensus 114 LSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~ 149 (554)
+|++.+...+++|.++||++||.||.+.++++..+.
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 999999999999999999999999999998877654
No 45
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.57 E-value=2.1e-14 Score=151.31 Aligned_cols=122 Identities=25% Similarity=0.490 Sum_probs=109.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...+||||||++..+..|..+|.. .+.+..+.++.+|+..+... +|||||+|+.||+++|+++++.|++....+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~--~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAET--NYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccC--CCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 467899999999999999999965 46777899999999998665 899999999999999999999999754457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
||++|++.+.+...+|++.||.|||.||++.++|...+....+..
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~~ 275 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRRK 275 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887765543
No 46
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.56 E-value=9e-14 Score=130.98 Aligned_cols=118 Identities=16% Similarity=0.309 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
++||||||++..+..+...|...|+++. .+.++.++++.+... .||+|++|+.+|+++|+++++.++... +.+||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~i 76 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGII 76 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeE
Confidence 3799999999999999999998899987 799999999998865 799999999999999999999998753 56899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++++..+.....+++..||++||.||++.++|...++.++++
T Consensus 77 i~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 77 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 9999999988999999999999999999999999999887654
No 47
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.56 E-value=1.3e-13 Score=129.71 Aligned_cols=121 Identities=22% Similarity=0.352 Sum_probs=108.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
|...+||||||++..+..+...|... ++.+. .+.++.++++.+... .||+|++|+.||+++|+++++.|+... +
T Consensus 1 ~~~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~--~ 76 (210)
T PRK09935 1 MKPASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQ--S 76 (210)
T ss_pred CCcceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhC--C
Confidence 45689999999999999999999876 57775 788999999998765 799999999999999999999999753 6
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.+|||++|+..+.....+++..||++|+.||++.++|...+..++.+
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 77 TVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred CCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 78999999999888999999999999999999999999998877654
No 48
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.55 E-value=5.8e-14 Score=162.34 Aligned_cols=120 Identities=22% Similarity=0.342 Sum_probs=109.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc--CCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK--ELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~--~~~~i 109 (554)
.++||||||++..+..+..+|...|++|.++.++.+|++.+... .||+||+|+.||+|+|+++++.|+... ..+.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQH--RFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 46999999999999999999999999999999999999999876 799999999999999999999998642 12678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|||++|+..+.+...+++++|+++||.||++.++|...+..++.
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988877654
No 49
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.55 E-value=8.5e-14 Score=149.60 Aligned_cols=115 Identities=19% Similarity=0.332 Sum_probs=105.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-----CcHHHHHHHHHhccCCCCc
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM-----TKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~-----mDGlElLr~Ir~~~~~~~i 109 (554)
||||||++.++..|...| .||+|..+.++.+|++.+... .||+||+|+.||+ ++|+++++.|+... +.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~--~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC--CCC
Confidence 699999999999999988 789999999999999999876 7999999999996 89999999998754 779
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|||++|+..+.+...++++.||+|||.||++.++|...++.++...
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~ 120 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLY 120 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999888776543
No 50
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.55 E-value=1e-13 Score=149.24 Aligned_cols=119 Identities=27% Similarity=0.455 Sum_probs=109.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
..+||||||++..+..|...|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~g~~ll~~i~~~~--~~~pv 79 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHE--TRTPV 79 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 45899999999999999999999999999999999999999766 799999999999999999999998754 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++|+..+.+...++++.||.|||.||++.++|...+..++..
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999888876653
No 51
>PRK15115 response regulator GlrR; Provisional
Probab=99.55 E-value=7.6e-14 Score=149.96 Aligned_cols=121 Identities=21% Similarity=0.416 Sum_probs=111.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+...+||||||++..+..|...|...||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+
T Consensus 3 ~~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~--~~~ 78 (444)
T PRK15115 3 RKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQ--PGM 78 (444)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcC--CCC
Confidence 4568999999999999999999999999999999999999999765 799999999999999999999998753 678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+.....+++++||.+||.||+..++|...+..++..
T Consensus 79 pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 79 PVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred cEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999887764
No 52
>PRK14084 two-component response regulator; Provisional
Probab=99.54 E-value=1.7e-13 Score=134.82 Aligned_cols=116 Identities=20% Similarity=0.425 Sum_probs=101.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC-C-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCS-Y-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g-~-eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++||||||++..+..|..+|...+ + .|..+.++.+++..+... .||+|++|+.||+++|+++++.|+... ..++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~--~~~~ 76 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMK--EPPA 76 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCE
Confidence 489999999999999999998765 5 466899999999999765 799999999999999999999998753 5678
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
||++|+... ...++++.||.+||.||+..++|...+.++...
T Consensus 77 iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 77 IIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 888888654 567899999999999999999999998887644
No 53
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.54 E-value=3.6e-14 Score=163.60 Aligned_cols=120 Identities=23% Similarity=0.468 Sum_probs=109.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...+||||||+...++....+|...|.+|..+.+|.+|++++... ..+|+|+||++||.|||+|+.++|++.. ..++|
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~-~~y~~ifmD~qMP~mDG~e~~~~irk~~-~~~~p 742 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPP-HSYDVIFMDLQMPEMDGYEATREIRKKE-RWHLP 742 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCC-CcccEEEEEcCCcccchHHHHHHHHHhh-cCCCC
Confidence 368999999999999999999999999999999999999999722 2799999999999999999999999863 36899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
||.+|+..+.+...+|++.|-+.||.||+..+.|...+.+.+
T Consensus 743 IvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 743 IVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999988888777654
No 54
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.54 E-value=1.9e-13 Score=127.97 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=103.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++||||||++..+..|...|... ++. +..+.++.++++.+... .||+||+|+.||+++|+++++.|+ ..+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~-----~~~ 73 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP-----KGM 73 (196)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc-----cCC
Confidence 368999999999999999999754 565 45889999999998765 799999999999999999999986 357
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|...+.+....+++.||++||.||++.++|...++.++++
T Consensus 74 ~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred CEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999887754
No 55
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.53 E-value=2.2e-13 Score=132.83 Aligned_cols=115 Identities=18% Similarity=0.388 Sum_probs=98.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-CE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCS-YQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g-~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|++||||||++..+..|..+|...+ +. +..+.++.++++.+... .||+|++|+.||+++|+++++.|+.. ...
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~---~~~ 75 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPE---HMP 75 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhccc---CCC
Confidence 3799999999999999999998876 44 34789999999998765 79999999999999999999998632 345
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
+||++|+.. +.+.++++.||.+||.||+..++|...+.++.+
T Consensus 76 ~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 76 YIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred EEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 788888865 467899999999999999999999998887754
No 56
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.53 E-value=8.3e-13 Score=111.28 Aligned_cols=124 Identities=22% Similarity=0.449 Sum_probs=109.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
..+.++||++++++.....+...|...+++ +..+.++.+++..+... .+|++++|+.+++++|+++++.++.....+
T Consensus 2 ~~~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~~ 79 (129)
T PRK10610 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMS 79 (129)
T ss_pred CcccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCcC
Confidence 345689999999999999999999988884 77889999999988765 799999999999999999999998754445
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.+|+|+++...+......+++.|+.+|+.||++..++...++.++++
T Consensus 80 ~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 80 ALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred CCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 78999999888888889999999999999999999999988877654
No 57
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.52 E-value=1.8e-13 Score=158.66 Aligned_cols=121 Identities=18% Similarity=0.244 Sum_probs=110.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...+||||||++..+..+..+|...|++|..+.++.+|++.+... ..|||||+|+.||+|+|+++++.|+... +.+|
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~--~~~~ 756 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQY--PSLV 756 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCC
Confidence 467999999999999999999999999999999999999988643 2689999999999999999999999753 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
||++|+........++++.|+++||.||++.++|...+.++++.
T Consensus 757 ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 757 LIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred EEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 99999999988899999999999999999999999999887754
No 58
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.52 E-value=1.8e-13 Score=159.18 Aligned_cols=121 Identities=20% Similarity=0.317 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC-c
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR-I 109 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~-i 109 (554)
...+||||||++..+..+..+|...||+|.++.++.+|++.+... .||+||+|+.||+++|+++++.|+....... +
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~ 778 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNEV 778 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCCC
Confidence 456899999999999999999999999999999999999999875 8999999999999999999999998643323 8
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|||++|+....+...++++.|+++||.||++..+|...+..++.
T Consensus 779 pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 779 KFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999887764
No 59
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.52 E-value=3.3e-13 Score=145.60 Aligned_cols=117 Identities=26% Similarity=0.464 Sum_probs=107.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEE
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVL 114 (554)
||||||++..+..+...|...|++|..+.++.+|+..+... .||+||+|+.||+++|+++++.|+... +.+|||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~--~~~~vIvl 76 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRH--PQLPVIVM 76 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhC--CCCeEEEE
Confidence 69999999999999999998999999999999999998765 799999999999999999999998753 67899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 115 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 115 Ss~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|+..+.....++++.|+.+||.||+..++|...+..++...
T Consensus 77 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 77 TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 99999899999999999999999999999999988876643
No 60
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.51 E-value=5.6e-13 Score=126.36 Aligned_cols=119 Identities=28% Similarity=0.446 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++..+..|...|...++.+..+.++.++++.+... .||+|++|+.+|+++|+++++.|+... ..+|||
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~--~~~~ii 76 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRG--QTLPVL 76 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEE
Confidence 4799999999999999999998899999999999999988765 799999999999999999999998754 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+++...+.....+++..||++||.||+...+|...+..++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 77 LLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred EEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999888999999999999999999999999888776543
No 61
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.51 E-value=7.3e-13 Score=127.65 Aligned_cols=118 Identities=29% Similarity=0.445 Sum_probs=107.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
..+||||||++.++..|..+|...|+.|..+.++.+++..+... .||+|++|+.||+++|+++++.|+.. ..+||
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~---~~~pi 84 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRF---SDIPI 84 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCE
Confidence 34899999999999999999998999999999999999998765 79999999999999999999999863 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|+++...+......++.+||++||.||+...+|...+..++++
T Consensus 85 i~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 85 VMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred EEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 9999998888889999999999999999999999888877654
No 62
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.51 E-value=6e-13 Score=140.27 Aligned_cols=124 Identities=27% Similarity=0.394 Sum_probs=112.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+.+||||||++..+..|...|...+++|..+.++.+++..+... .||+|++|+.||+++|+++++.|+.....+.+||
T Consensus 2 ~~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~i 79 (457)
T PRK09581 2 TARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPV 79 (457)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 35899999999999999999988899999999999999999766 7999999999999999999999987543457899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
|++|+..+.....+++++||++||.||++.++|...+..+++....
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 125 (457)
T PRK09581 80 VMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKMV 125 (457)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888765543
No 63
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.50 E-value=4.7e-13 Score=123.71 Aligned_cols=120 Identities=23% Similarity=0.466 Sum_probs=109.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+.+||||||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.+++++|+++++.|+... +.+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~--~~~~ 77 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARG--SPLP 77 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCC
Confidence 467999999999999999999998899999999999999988765 799999999999999999999998753 6789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
||+++...+......+++.|+.+|+.||+...+|...+..++..
T Consensus 78 ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 78 VIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 99999999989999999999999999999999998888776654
No 64
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.49 E-value=3.4e-13 Score=154.39 Aligned_cols=121 Identities=21% Similarity=0.338 Sum_probs=106.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC-
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR- 108 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~- 108 (554)
+..++||||||++..+..+..+|+..||+|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|+.......
T Consensus 523 ~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~--~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~ 600 (779)
T PRK11091 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPD--EYDLVLLDIQLPDMTGLDIARELRERYPREDL 600 (779)
T ss_pred ccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEcCCCCCCCHHHHHHHHHhccccCCC
Confidence 3468999999999999999999999999999999999999999765 7999999999999999999999997643344
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
+|||++|+.... ...+++..|+++||.||++..+|...+.+++.
T Consensus 601 ~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 601 PPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred CcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 489999987654 46789999999999999999999998887754
No 65
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.47 E-value=5.3e-13 Score=159.30 Aligned_cols=119 Identities=19% Similarity=0.343 Sum_probs=109.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+++||||||++..+..+..+|+..|++|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+|
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~--~~~p 1032 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQN--SSLP 1032 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 357999999999999999999999999999999999999999765 799999999999999999999999754 6789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
||++|+..+.....++++.|+++||.||++.++|...+.++..
T Consensus 1033 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1033 IWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988876643
No 66
>PRK13435 response regulator; Provisional
Probab=99.47 E-value=1.1e-12 Score=118.52 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=101.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mDGlElLr~Ir~~~~~~ 107 (554)
|.+++|||+|+++..+..|...|...|+.+. .+.++.++++.+... .||+||+|+.++ +.+|+++++.++.. .
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~---~ 77 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSAD---G 77 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhC---C
Confidence 5678999999999999999999998899876 789999999988755 799999999998 58999999999763 5
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.+|||+++...+ ...++..|+++||.||++..+|...|++++.+
T Consensus 78 ~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (145)
T PRK13435 78 GVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSAR 121 (145)
T ss_pred CCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhc
Confidence 789999997643 25688899999999999999999988877643
No 67
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.44 E-value=4.1e-12 Score=117.89 Aligned_cols=121 Identities=19% Similarity=0.330 Sum_probs=106.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
|..++||||||++..+..+...|... ++.+. .+.++.++++.+... .||+|++|+.+++++|+++++.|+... +
T Consensus 1 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~--~ 76 (211)
T PRK15369 1 MKNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL--EPDIVILDLGLPGMNGLDVIPQLHQRW--P 76 (211)
T ss_pred CCccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHC--C
Confidence 35689999999999999999999865 46654 889999999988766 799999999999999999999998753 6
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.+|||++|...+......++..|+.+|+.||+...+|...+..++..
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 77 AMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 78999999999988999999999999999999999999888876543
No 68
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.42 E-value=6.5e-12 Score=117.75 Aligned_cols=120 Identities=24% Similarity=0.321 Sum_probs=105.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~-~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
..++||||||++..+..|...|.. .++.+. .+.++.+++..+... .||+|++|+.||+++|+++++.++... +.
T Consensus 5 ~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~--~~ 80 (215)
T PRK10403 5 TPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDG--VT 80 (215)
T ss_pred eeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 357999999999999999999975 467765 789999999988765 799999999999999999999998754 56
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+|+|+++...+......+++.|+.+|+.||++..+|...++.++.+
T Consensus 81 ~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 81 AQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred CeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 8999999988888889999999999999999999999988876543
No 69
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.42 E-value=6.5e-12 Score=118.12 Aligned_cols=120 Identities=24% Similarity=0.341 Sum_probs=106.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
...+||||||++..+..|..+|... ++.+. .+.++.+++..+... .||+|++|+.+|+++|+++++.|+... +.
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~l~~~~~~~~~~~l~~~~--~~ 80 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKS--LS 80 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHHhC--CC
Confidence 4579999999999999999999765 56654 789999999998765 799999999999999999999998754 67
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+|+|+++...+......+++.|+++|+.||++..+|...+..+++.
T Consensus 81 ~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 81 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred CcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8999999998888899999999999999999999999999887654
No 70
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.41 E-value=1.8e-12 Score=145.80 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=103.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
.++||||||++..+..+..+|...||.|..+.++.+++..+... .|||||+|+.||+++|++++++|+... +.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~--~~Dlvl~d~~lp~~~g~~~l~~l~~~~--~~~pi 82 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG--EIDCVVADHEPDGFDGLALLEAVRQTT--AVPPV 82 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc--CCCEEEEeccCCCCcHHHHHHHHHhcC--CCCCE
Confidence 57999999999999999999988899999999999999998765 799999999999999999999998753 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRT--NELLNLWTHMWR 153 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~--eeL~~~L~~llr 153 (554)
|++|+..+.+...+++..||.+||.||... ..+...+...+.
T Consensus 83 I~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~ 126 (665)
T PRK13558 83 VVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVP 126 (665)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhh
Confidence 999999999999999999999999999753 245555554443
No 71
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.41 E-value=2.8e-12 Score=126.93 Aligned_cols=119 Identities=12% Similarity=0.162 Sum_probs=98.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHH-HHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKML-KYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElL-r~Ir~~~~~~ 107 (554)
|.+.+|+||||++.++..|..+|.. ++. +..+.++.++++.+. .|||||+|+.||+++|++++ +.|+... +
T Consensus 8 ~~~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~--p 80 (216)
T PRK10100 8 SHGHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKN--N 80 (216)
T ss_pred ccCceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhC--C
Confidence 4567899999999999999999984 454 457889999998742 48999999999999999997 5677643 7
Q ss_pred CceEEEEecCCCHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLR--LGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~--aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
.++||++|+..+ ....++. .||.+||.|+.+.++|.+.|+.+++....
T Consensus 81 ~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~ 130 (216)
T PRK10100 81 NIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECY 130 (216)
T ss_pred CCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcc
Confidence 799999999876 3445555 59999999999999999999988765443
No 72
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.34 E-value=1.1e-11 Score=122.02 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=91.8
Q ss_pred HHHHHHHHhhC---CCEEEEECCHHHHHHHHHhcCCCceEEE---EecCCCCCcHHHHHHHHHhccCCCCceEEEEecCC
Q 008761 45 SDAVFSLLVKC---SYQVTSVRSPRQVIDALNAEGSDIDLIL---AEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 45 r~~L~~lL~~~---g~eV~~A~dg~EALe~L~~~~~~PDLIL---LDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
|..|..+|... ++.|..+.+++++++.+... .||++| +|+.||+++|++++++|++.. +.+|||++|+..
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~--p~~~iIvlt~~~ 78 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKF--PRMRRLVIADDD 78 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHC--CCCCEEEEeCCC
Confidence 56788888642 55667999999999998765 799998 688999999999999998764 789999999988
Q ss_pred CHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 119 EVSVVVKCL-RLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 119 d~e~~~eAL-~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
+.....+++ ++||.+||.||++.++|...|+.+++...
T Consensus 79 ~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 79 IEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR 117 (207)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence 777666666 79999999999999999999998877543
No 73
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.32 E-value=2.1e-11 Score=119.63 Aligned_cols=118 Identities=11% Similarity=0.140 Sum_probs=97.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC--CE-EEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCcHHHHHHHHHhccCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCS--YQ-VTSVRSPRQVIDALNAEGSDIDLILAEVD--LPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g--~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~--MP~mDGlElLr~Ir~~~~~~ 107 (554)
+.||||||++.++..+..+|...+ +. |..+.++.++++.+... +|||||+|+. |+.++|++++++|++.. +
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~--p 76 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQH--P 76 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHC--C
Confidence 369999999999999999998654 34 45889999999988755 7999999976 88889999999998754 6
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAAD-YLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~D-yL~KP~~~eeL~~~L~~llr~~ 155 (554)
.++||++|+..+.... .++..|+.. |+.|+.+.++|...++.+..+.
T Consensus 77 ~~~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~ 124 (207)
T PRK15411 77 NTLFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDILKKE 124 (207)
T ss_pred CCeEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHHHcCC
Confidence 7999999998776554 356556554 8899999999999988876543
No 74
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.29 E-value=3.5e-11 Score=116.55 Aligned_cols=119 Identities=16% Similarity=0.326 Sum_probs=101.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.+..+||++||.+..+..+...|...||+++ ++.++-++.+.+... .|||||+|+.+|..|-++-+..... ...
T Consensus 3 ~~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~--~pDvVildie~p~rd~~e~~~~~~~---~~~ 77 (194)
T COG3707 3 AMLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERL--QPDVVILDIEMPRRDIIEALLLASE---NVA 77 (194)
T ss_pred ccccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhc--CCCEEEEecCCCCccHHHHHHHhhc---CCC
Confidence 4578999999999999999999999999755 888999999999887 8999999999999995554444433 267
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
.|||++|++.+...+..+.++||..||+||+....|+..+.-...
T Consensus 78 ~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~s 122 (194)
T COG3707 78 RPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVS 122 (194)
T ss_pred CCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHH
Confidence 799999999999999999999999999999998877766655443
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.28 E-value=7.9e-11 Score=116.46 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=100.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-CcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~-mDGlElLr~Ir~~~~~~~ 108 (554)
...+||||||++..+..+...|+..|+.+. .+.++.++++.+... .||+||+|+.||+ ++|+++++.++... .
T Consensus 136 ~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~---~ 210 (261)
T PRK09191 136 VATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTF---D 210 (261)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhC---C
Confidence 356899999999999999999998899887 788999999998765 7999999999995 89999999998752 7
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+|||++|+..+.... +...|+.+||.||++.++|...+.+++..
T Consensus 211 ~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 211 VPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred CCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 899999997765433 44567899999999999999998876543
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.26 E-value=1.4e-10 Score=92.75 Aligned_cols=111 Identities=32% Similarity=0.507 Sum_probs=99.4
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEe
Q 008761 36 LLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 36 LIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
||+++++..+..+...|...|+.+..+.+..+++..+... .+|+|++|..++..+|+++++.++.. ...+|+|+++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~--~~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHh--CCCCCEEEEE
Confidence 5789999999999999988899999999999999998765 79999999999999999999999875 3678999999
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 116 AQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 116 s~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
..........++..|+.+|+.||+...+|...+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHh
Confidence 88777888899999999999999999988877654
No 77
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.22 E-value=1.5e-10 Score=134.29 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=106.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
..+||||||++..+..+...|...||+|..+.++.++++.+......||+||+ .||+++|+++++.|+... +.+||
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~--~~ipI 772 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAA--PTLPI 772 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhC--CCCCE
Confidence 46899999999999999999999999999999999999999764224799999 799999999999998754 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++|.........+++..| ++||.||++..+|...|..+++.
T Consensus 773 Ivls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 773 ILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred EEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 9999998888899999999 99999999999999999887653
No 78
>PRK13557 histidine kinase; Provisional
Probab=99.17 E-value=4e-10 Score=121.42 Aligned_cols=119 Identities=19% Similarity=0.327 Sum_probs=106.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~-mDGlElLr~Ir~~~~~~~iP 110 (554)
+.+||||||++..+..|..+|...||++..+.++.++++.+... ..||+|++|..|++ ++|+++++.|+... +.+|
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~--~~~~ 491 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQ--PKIK 491 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhC--CCCc
Confidence 56899999999999999999998899999999999999998643 25999999999997 99999999998753 6789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
||+++...+......++..|+.+||.||+..++|...++.++.
T Consensus 492 ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 492 VLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred EEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 9999998888888889999999999999999999988877653
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.15 E-value=2.9e-10 Score=117.51 Aligned_cols=89 Identities=24% Similarity=0.450 Sum_probs=79.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~ 140 (554)
.+.++.+|++.+... .||+||+|+.||+++|++++++|+... ..+|||++|+..+.+...+++++||+|||.||+.
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~--~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRG--DQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 478999999999765 799999999999999999999998754 6799999999999999999999999999999994
Q ss_pred -HHHHHHHHHHHHH
Q 008761 141 -TNELLNLWTHMWR 153 (554)
Q Consensus 141 -~eeL~~~L~~llr 153 (554)
.++|...+...++
T Consensus 78 ~~~~L~~~i~~~l~ 91 (303)
T PRK10693 78 DLNRLREMVFACLY 91 (303)
T ss_pred cHHHHHHHHHHHhh
Confidence 8888888776654
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.04 E-value=1e-09 Score=110.72 Aligned_cols=117 Identities=19% Similarity=0.427 Sum_probs=101.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++|+|+||++..++.|..++... .+++. .+.++.++++.+... .||++++|+.||+++|+++...|+... +..
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~--~~~ 76 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGD--PRP 76 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccC--CCC
Confidence 468999999999999999999843 23333 788999999999876 899999999999999999999999753 667
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+||++|++.+ .+..+++..|.|||.||+..+.|...+..+.+.
T Consensus 77 ~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 77 AIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred eEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 8999999875 667788999999999999999999998877654
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=99.01 E-value=2.7e-09 Score=122.48 Aligned_cols=118 Identities=11% Similarity=0.173 Sum_probs=93.4
Q ss_pred EEEEEeCCHH--------HHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH----HHHHHHH
Q 008761 34 RILLCDNDSN--------SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL----KMLKYIT 101 (554)
Q Consensus 34 rVLIVDDd~~--------~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl----ElLr~Ir 101 (554)
+||||||+.. +++.|...|+..||+|..+.++.+|++.+... ..||+||+|+.||+++|+ ++|++|+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~IR 80 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHHH
Confidence 7999999995 69999999999999999999999999999752 279999999999999997 8999999
Q ss_pred hccCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLRTNEL-LNLWTHMWRRR 155 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~~eeL-~~~L~~llr~~ 155 (554)
... ..+||||+|+..+ .......|+ -+..|+.+--...++ ...|....++.
T Consensus 81 ~~~--~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y 134 (755)
T PRK15029 81 ERQ--QNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_pred hhC--CCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHHHH
Confidence 753 6899999999886 444444443 367788886655444 34455544433
No 82
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.30 E-value=7.4e-06 Score=95.22 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=95.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...+|||+||++..+..+..+|...|+.|..+.++.+ +... .||++++|+.||++++...+............+
T Consensus 535 ~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~~--~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (919)
T PRK11107 535 AGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPEA--HYDILLLGLPVTFREPLTMLHERLAKAKSMTDF 608 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hccC--CCCEEEecccCCCCCCHHHHHHHHHhhhhcCCc
Confidence 3469999999999999999999999999999888887 3333 799999999999988776555544433334457
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
+|+++...+......+.+.|+.+|+.||+...+|...+....
T Consensus 609 ~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 609 LILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred EEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 888888888888889999999999999999999988776543
No 83
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.19 E-value=2.9e-06 Score=92.18 Aligned_cols=95 Identities=22% Similarity=0.349 Sum_probs=82.7
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 57 YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 57 ~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
++|.++..+.++++.+..+ +||.+++|+.||+|+|+++++++++.. ..++++|...+...-.+.+++|+++||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~~--~~~~~lld~~m~~~~~~~~~~~lk~~~----~~~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 13 KEVATAKKGLIALAILLDH--KPDYKLLDVMMPGMDGFELCRRLKAEP----ATVVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred hhhhhccchHHHHHHHhcC--CCCeEEeecccCCcCchhHHHHHhcCC----cceEEEEecCCCCcchhHHhhhhhhhcc
Confidence 5777899999999999877 899999999999999999999999853 2389999988888889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 008761 137 KPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 137 KP~~~eeL~~~L~~llr~~rl 157 (554)
||.....+....+.+.+....
T Consensus 87 ~~~~~~~~~~r~~~l~~~k~~ 107 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRLKCS 107 (435)
T ss_pred CCCChHHHHHhhhhhccchhh
Confidence 999988888877777655433
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.59 E-value=0.00053 Score=47.38 Aligned_cols=54 Identities=30% Similarity=0.506 Sum_probs=48.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCC
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP 89 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP 89 (554)
+|+++++++..+..+...|...|+++..+.+..+++..+... .+|++++|+.++
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 799999999999999999998899998999999999988765 799999998764
No 85
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.42 E-value=0.0012 Score=58.98 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=75.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIV 113 (554)
|||||||+..-+..|..+|+-.|+++..+....- ....... ..+.+++-..-.. ...+.++.|.+.. +++|||+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~--~~~~~~v~~g~~~-~~~~~l~~l~~~~--~~~Pvll 74 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSS--PWEACAVILGSCS-KLAELLKELLKWA--PHIPVLL 74 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhc--CCcEEEEEecCch-hHHHHHHHHHhhC--CCCCEEE
Confidence 6999999999999999999988988887765433 2222222 3455444333222 5567888887654 8899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008761 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (554)
Q Consensus 114 LSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~l 151 (554)
+......... ..+.+-|..|++..+|...++++
T Consensus 75 lg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 75 LGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 9987665111 11667799999999999888764
No 86
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=97.10 E-value=0.02 Score=53.36 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=89.5
Q ss_pred CCCcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCC--cHHHHHHHH
Q 008761 30 RSKVRILLC----DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYI 100 (554)
Q Consensus 30 mskirVLIV----DDd~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~m--DGlElLr~I 100 (554)
|++.+||+. |.+..-...+..+|+..||+|+.. -..++.++.+.+. .||+|.+-..+... .-.++++.|
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~--~~d~V~lS~~~~~~~~~~~~~~~~L 78 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET--DADAILVSSLYGHGEIDCRGLREKC 78 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCccccCHHHHHHHHHHH
Confidence 467788888 777777788888899999998843 3678888888877 89999999888753 345677888
Q ss_pred HhccCCCCceEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 101 TRDKELQRIPVIMMSAQD------EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs~~------d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
++.. ...++|+ +.+.. ..+...++.++|++.++......+++...+++.+.
T Consensus 79 ~~~~-~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 79 IEAG-LGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HhcC-CCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 7653 2355544 44322 34455678899999999988889998888877653
No 87
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=96.81 E-value=0.00054 Score=66.58 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=25.1
Q ss_pred EEEEEccCcchhcccccccccCCCCCc-cccc
Q 008761 219 TATVVASTSGTAAVEPIDASECGPDVP-GISD 249 (554)
Q Consensus 219 iVaIGASTGGp~AL~~I~L~~lPaD~P-pil~ 249 (554)
||+||||||||+||+.| |..||+++| +++.
T Consensus 1 vV~IGaSaGG~~al~~i-l~~lp~~~~~~ivi 31 (182)
T PF01339_consen 1 VVAIGASAGGPEALQEI-LSALPADFPAAIVI 31 (182)
T ss_dssp EEEEEE-TTHHHHHCCC-HCCS-TTSSSEEEE
T ss_pred CEEEEeCCCCHHHHHHH-HHHhccCCCceEEE
Confidence 68999999999999999 999999998 5443
No 88
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.76 E-value=0.043 Score=49.63 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=75.8
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCc--HHHHHHHHHhccCCCCceEEE
Q 008761 39 DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTK--GLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 39 DDd~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~mD--GlElLr~Ir~~~~~~~iPIIV 113 (554)
|.+..=...+..+|+..||+|... ...++.++.+.+. +||+|.+-..++..- --++++.|++.. .....|+
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~--~~d~V~iS~~~~~~~~~~~~~~~~L~~~~--~~~i~i~ 85 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQE--DVDVIGLSSLSGGHMTLFPEVIELLRELG--AGDILVV 85 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcccchhhHHHHHHHHHHHHhcC--CCCCEEE
Confidence 445555566677788889998843 3578888888776 899999988776432 245677777653 2234456
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008761 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (554)
Q Consensus 114 LSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~ 149 (554)
+.+....+...++.++|.+.|+..-...++....|+
T Consensus 86 ~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 86 GGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 665555566778889999999998888887766553
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.68 E-value=0.088 Score=48.77 Aligned_cols=116 Identities=9% Similarity=0.067 Sum_probs=78.9
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCC-CcH-HHHHHHHHhc
Q 008761 33 VRILLC----DNDSNSSDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKG-LKMLKYITRD 103 (554)
Q Consensus 33 irVLIV----DDd~~~r~~L~~lL~~~g~eV~---~A~dg~EALe~L~~~~~~PDLILLDi~MP~-mDG-lElLr~Ir~~ 103 (554)
+||+|. |-+..-...+..+|+..||+|+ ...+.++.++.+.+. .+|+|.+-..+.. +.. -++++.|++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~--~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455543 3333444556778888899988 345788999998877 8999999776643 222 3466667664
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
. .....|++.+....+...+..++|+++|+..-.+..+++..+.+.+
T Consensus 81 g--~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 81 G--RPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred C--CCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 3 2223355565444556677899999999998888888877776644
No 90
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.72 E-value=0.13 Score=46.22 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=76.6
Q ss_pred HHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CcHHHHHHHHHhccCCCCceEEEEecCCCHHH
Q 008761 45 SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIMMSAQDEVSV 122 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~--mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~ 122 (554)
...|...|...|++|+.+.+.++++..+... .....|+++|. +. ....++++.|+..+ ..+||.+++.+...+.
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~~~~~ 81 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERDTTED 81 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCCHHHC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCCCccc
Confidence 3557778888899999999999999999875 37899999987 22 23567899999876 7899999998664443
Q ss_pred HHHHHHcCCCEEEeCCCCHH-HHHHHHHHHHH
Q 008761 123 VVKCLRLGAADYLVKPLRTN-ELLNLWTHMWR 153 (554)
Q Consensus 123 ~~eAL~aGA~DyL~KP~~~e-eL~~~L~~llr 153 (554)
+-.-+-.-++.|+...-+.. .+...|....+
T Consensus 82 l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 82 LPAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp CCHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred CCHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 33344456889998876554 44455555443
No 91
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.61 E-value=0.18 Score=44.87 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=64.9
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCC--cHHHHHHHHHhccCCC-CceEE
Q 008761 39 DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQ-RIPVI 112 (554)
Q Consensus 39 DDd~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~m--DGlElLr~Ir~~~~~~-~iPII 112 (554)
|.+..-...+..+|+..||+|... ...++.++.+.+. +||+|.+-..+... ...++++.+++.. + .++ |
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~--~pdvV~iS~~~~~~~~~~~~~i~~l~~~~--~~~~~-i 84 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEE--DADAIGLSGLLTTHMTLMKEVIEELKEAG--LDDIP-V 84 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHHcC--CCCCe-E
Confidence 455556677888999999998743 3577888888776 89999998875543 4567888888753 3 455 4
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
++.+..-......+...|++.|+..
T Consensus 85 ~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 85 LVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred EEECCCCChhHHHHHHcCCeEEECC
Confidence 4554433333356889999777763
No 92
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.26 E-value=0.38 Score=44.87 Aligned_cols=104 Identities=9% Similarity=0.068 Sum_probs=74.1
Q ss_pred HHHHHHHHhhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCCc--HHHHHHHHHhccCCCCceEEEEecC--
Q 008761 45 SDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK--GLKMLKYITRDKELQRIPVIMMSAQ-- 117 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~---~A~dg~EALe~L~~~~~~PDLILLDi~MP~mD--GlElLr~Ir~~~~~~~iPIIVLSs~-- 117 (554)
...+..+|+..||+|+ .....++.++.+.++ .+|+|.+-..|...- --++.+.|++.. ... ++|++.+.
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~--~adiVglS~l~~~~~~~~~~~~~~l~~~g-l~~-~~vivGG~~v 93 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET--KADAILVSSLYGHGEIDCKGLRQKCDEAG-LEG-ILLYVGGNLV 93 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEecccccCHHHHHHHHHHHHHCC-CCC-CEEEecCCcC
Confidence 4567778899999988 455789999999877 899999988775432 335666777654 223 44666653
Q ss_pred -CCHH---HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 118 -DEVS---VVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 118 -~d~e---~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
...+ ...++.++|++..+......+++...|++.+
T Consensus 94 i~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 94 VGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred cChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 1112 2346889999999988888899888887765
No 93
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=95.05 E-value=0.0092 Score=58.72 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=47.3
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008761 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140 (554)
Q Consensus 78 ~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~ 140 (554)
..|+++-++.||.+.++.++..+.......++|++++............+..|+.+|+.+|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 125 (340)
T KOG1601|consen 63 SIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDR 125 (340)
T ss_pred cccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCccccccccccc
Confidence 689999999999999999988887533345566666665555555666777778888888876
No 94
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=94.50 E-value=0.037 Score=65.94 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=42.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDL 88 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~M 88 (554)
...+||||||++.++..+..+|+..|++|..+.++ +... .+||||+|+.+
T Consensus 688 ~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~~~--~~Dlvl~D~~~ 737 (894)
T PRK10618 688 DGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LISQ--EYDIFLTDNPS 737 (894)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------ccCC--CCCEEEECCCC
Confidence 35799999999999999999999999999988763 2223 79999999984
No 95
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=94.46 E-value=0.022 Score=38.90 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCccchh
Q 008761 469 DRREAALIKFRQKRKERCFDKKIRYV 494 (554)
Q Consensus 469 ~~r~~~~~r~~~k~~~r~~~k~i~y~ 494 (554)
..|.+.|.||-||||.|.+. +..|.
T Consensus 2 ~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 2 IARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ----HHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 36899999999999999988 66774
No 96
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.00 E-value=1 Score=46.14 Aligned_cols=117 Identities=17% Similarity=0.197 Sum_probs=81.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHH------hhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC---------CCcH
Q 008761 31 SKVRILLCDNDSNSSDAVFSLL------VKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP---------MTKG 93 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL------~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP---------~mDG 93 (554)
.-+++=|+.|+....-.+...+ -+.||.|. ++.|...|.++... .+++| || +..-
T Consensus 92 ~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~---G~~~v-----mPlg~pIGsg~Gi~~ 163 (248)
T cd04728 92 DWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA---GCAAV-----MPLGSPIGSGQGLLN 163 (248)
T ss_pred CeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCC
Confidence 3578888887765444443333 34589876 66678887776654 58888 66 2222
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHHh
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~-----KP~~~eeL~~~L~~llr~~rl~ 158 (554)
.++++.|++. ..+|||+=..-...+.+.+||++||+..+. |.-++..+...+...+..-|+.
T Consensus 164 ~~~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr~a 230 (248)
T cd04728 164 PYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGRLA 230 (248)
T ss_pred HHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 6888888875 468998888888899999999999999964 4445666666666666555543
No 97
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.68 E-value=1.1 Score=45.83 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=80.5
Q ss_pred CCcEEEEEeCCHHHHHHHHH------HHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC---------CCcH
Q 008761 31 SKVRILLCDNDSNSSDAVFS------LLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP---------MTKG 93 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~------lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP---------~mDG 93 (554)
.-+++=|+.|+....-.+.. .|-+.||.|. ++.|...|.++... .|++| || +..-
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~---G~~~v-----mPlg~pIGsg~gi~~ 163 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA---GCAAV-----MPLGAPIGSGLGLLN 163 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCC
Confidence 35788888876643333333 3335689876 66678887776654 58888 66 2212
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHHh
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~-----KP~~~eeL~~~L~~llr~~rl~ 158 (554)
.++++.|++. ..+|||+=..-...+.+.++|++||+..+. |.-++..+...+...+..-|..
T Consensus 164 ~~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr~a 230 (250)
T PRK00208 164 PYNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGRLA 230 (250)
T ss_pred HHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 6788888874 468998888888899999999999999964 4445666666666666555543
No 98
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=93.65 E-value=2.4 Score=40.12 Aligned_cols=117 Identities=13% Similarity=0.132 Sum_probs=80.4
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCC--CcHHHHHHHHH
Q 008761 31 SKVRILLC----DNDSNSSDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYIT 101 (554)
Q Consensus 31 skirVLIV----DDd~~~r~~L~~lL~~~g~eV~---~A~dg~EALe~L~~~~~~PDLILLDi~MP~--mDGlElLr~Ir 101 (554)
.++||||. |-+..-.+.+.++|...||+|+ ...+++|+++...++ ..|+|.+-..-.+ ...-++.+.++
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEeccchHHHHHHHHHHHHH
Confidence 57788775 5666667789999999999988 567899999988666 6898887654322 12334556666
Q ss_pred hccCCCCceEE-EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVI-MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 102 ~~~~~~~iPII-VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
+.. .-.|+ ++.+....+...+..+.|++.++.--....+....+...+
T Consensus 89 e~G---~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 89 EAG---VEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HhC---CcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 543 22344 4555666666667778999999987777766665554443
No 99
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=93.48 E-value=0.78 Score=53.54 Aligned_cols=117 Identities=10% Similarity=0.009 Sum_probs=76.3
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 33 VRILLCDNDS-NS-----SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 33 irVLIVDDd~-~~-----r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
++|+||+++- .. .+.|...|+..||+|..+.+..+++..+... .....|++++.-. ...++..|+..+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~-- 74 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLN-- 74 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhC--
Confidence 3678887763 11 4557778888999999999999999998754 4788999996433 355888888765
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR-TNELLNLWTHMWRRR 155 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~-~eeL~~~L~~llr~~ 155 (554)
..+||+++........+-...-.-++.|+..-.. .+.+...|....++.
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y 124 (713)
T PRK15399 75 EYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEY 124 (713)
T ss_pred CCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHH
Confidence 7899999986543222222222235566664433 333344455544433
No 100
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.23 E-value=2 Score=39.83 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=71.3
Q ss_pred HHHHHHHHhhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCC-cH-HHHHHHHHhccCCCCceEEEEecCC-
Q 008761 45 SDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-KG-LKMLKYITRDKELQRIPVIMMSAQD- 118 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~---~A~dg~EALe~L~~~~~~PDLILLDi~MP~m-DG-lElLr~Ir~~~~~~~iPIIVLSs~~- 118 (554)
.+.+..+|+..||+|+ .....++.++.+.++ ++|+|.+-..|... .. -++++.|++.. ...++ |++.+..
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~--~adiVglS~L~t~~~~~~~~~~~~l~~~g-l~~v~-vivGG~~~ 91 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET--DADAILVSSLYGHGEIDCKGLREKCDEAG-LKDIL-LYVGGNLV 91 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCCHHHHHHHHHHHHHCC-CCCCe-EEEECCCC
Confidence 4567778899999988 445788999998877 89999998877643 33 45777777654 23444 4455431
Q ss_pred ----C-HHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008761 119 ----E-VSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (554)
Q Consensus 119 ----d-~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~ 149 (554)
+ .+...++.++|++..+......+++...|+
T Consensus 92 i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 92 VGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 1 334566889999999998888887776654
No 101
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.14 E-value=1.4 Score=43.17 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=70.8
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC--cHHHHHHHHHh
Q 008761 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIV----DDd~~~r~~L~~lL~~~g~eV~~A~---dg~EALe~L~~~~~~PDLILLDi~MP~m--DGlElLr~Ir~ 102 (554)
..+||+. |-+..=...+..+|+..||+|+... ..++.++.+.+. +||+|.+-..|... ...++++.|++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEH--KPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578777 6666667788889999999987432 578888888776 89999999877653 34567788887
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
......++|++=...-..+ -+-..||+.|-.
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~ 190 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAE 190 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEEC
Confidence 6422356666554444332 466679988875
No 102
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.92 E-value=0.31 Score=50.91 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=54.2
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEe-cCCCHHHHHHHHHcCCCEE
Q 008761 56 SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS-AQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 56 g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLS-s~~d~e~~~eAL~aGA~Dy 134 (554)
|.++..+.+..++..... .-.+|++|..+ ...+ +....+ +...+|++. ...+.+....||++||.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~-----~~~~--~~~~~p-~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~ 68 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADM-----AEAC--AAAGLP-RRRRVVLVGGGEPGGALWRAAAAVGAEHV 68 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchh-----hhHH--HhccCC-CCCCEEEEeCCCCCHHHHHHHHHhChhhe
Confidence 345666666665544332 46788888654 1111 111111 223455454 4667889999999999999
Q ss_pred EeCCCCHHHHHHHHHHH
Q 008761 135 LVKPLRTNELLNLWTHM 151 (554)
Q Consensus 135 L~KP~~~eeL~~~L~~l 151 (554)
|.+|+...+|...+.++
T Consensus 69 l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 69 AVLPEAEGWLVELLADL 85 (322)
T ss_pred eeCCCCHHHHHHHHHhh
Confidence 99999999998877543
No 103
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=92.53 E-value=1.1 Score=52.45 Aligned_cols=115 Identities=10% Similarity=0.159 Sum_probs=74.2
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 33 VRILLCDNDS-N-----SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 33 irVLIVDDd~-~-----~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
++||||+++- . -.+.|...|++.||+|..+.+..+++..+... .....|++|+.- . ...++..|+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~-- 74 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK--Y-NLELCEEISKMN-- 74 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch--h-hHHHHHHHHHhC--
Confidence 3677887662 1 24557778888999999999999999998754 478899999643 2 255888888765
Q ss_pred CCceEEEEecCCCHHH-HHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSV-VVKCLRLGAADYLVKPLR-TNELLNLWTHMWRR 154 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~-~~eAL~aGA~DyL~KP~~-~eeL~~~L~~llr~ 154 (554)
..+||+++........ -...|+ -++.|+..--. .+.+...|....++
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~a~~i~~~~~~ 123 (714)
T PRK15400 75 ENLPLYAFANTYSTLDVSLNDLR-LQVSFFEYALGAADDIANKIKQTTDE 123 (714)
T ss_pred CCCCEEEEccccccccCChHHhh-hccceeeeccCCHHHHHHHHHHHHHH
Confidence 7899999986543221 222222 24556553333 33444445544443
No 104
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=90.57 E-value=3.4 Score=36.24 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEec-CCCCC-cHHHHHHHHHhccCCCCceEEEEe
Q 008761 41 DSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEV-DLPMT-KGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 41 d~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi-~MP~m-DGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
.+.-...|..+|++.||+|... .+.++..+.+.+. +||+|.+.. ..+.. ...++++.+++.. +.++|| +.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~--~pd~V~iS~~~~~~~~~~~~l~~~~k~~~--p~~~iv-~G 87 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAE--RPDVVGISVSMTPNLPEAKRLARAIKERN--PNIPIV-VG 87 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHT--TCSEEEEEESSSTHHHHHHHHHHHHHTTC--TTSEEE-EE
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcC--CCcEEEEEccCcCcHHHHHHHHHHHHhcC--CCCEEE-EE
Confidence 3555778899999999998755 2457777878776 899999998 44444 3466777777653 555555 44
Q ss_pred cCCCHHHHHHHHH--cCCCEEEeC
Q 008761 116 AQDEVSVVVKCLR--LGAADYLVK 137 (554)
Q Consensus 116 s~~d~e~~~eAL~--aGA~DyL~K 137 (554)
+..-...-.++++ .|++..+.-
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEEE
T ss_pred CCchhcChHHHhccCcCcceecCC
Confidence 4333333444555 566665543
No 105
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=90.43 E-value=3.9 Score=40.85 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=70.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC--cHHHHHHHHHh
Q 008761 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIV----DDd~~~r~~L~~lL~~~g~eV~~A~---dg~EALe~L~~~~~~PDLILLDi~MP~m--DGlElLr~Ir~ 102 (554)
..+|++. |.+..=...+..+|+..||+|+... ..++.++.+.+. +||+|.+-..|+.. .-.++++.|++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~--~~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEH--KADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEccchhccHHHHHHHHHHHHh
Confidence 4577777 6666667777888899999988443 578888888877 89999999888643 23567788876
Q ss_pred ccCCCCceEEEEecCCCHHHHHH---HHHcCCCEEEeC
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVK---CLRLGAADYLVK 137 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~e---AL~aGA~DyL~K 137 (554)
.. ..++|++=..--+.+.+.. +-..||+.|-.-
T Consensus 166 ~~--~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 166 RG--IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred cC--CCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 54 4666665554444443322 234699877653
No 106
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=90.09 E-value=1.1 Score=41.21 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=71.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH-H-HhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY-I-TRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~-I-r~~~~~~~i 109 (554)
.-+.+.||.+.........+|...+.+|+.-... ..+-.. .+|++|+.+-.+--+-+.+-.. + ++. .-+
T Consensus 11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~lp~~--hYD~~Ll~vavtfr~n~tm~~~~l~~Al---~mt 81 (140)
T COG4999 11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SALPPA--HYDMMLLGVAVTFRENLTMQHERLAKAL---SMT 81 (140)
T ss_pred cceeEEecCccHHHHHHHHHHhcCCceEEecccc----cccChh--hhceeeecccccccCCchHHHHHHHHHH---hhh
Confidence 3488999999999999999999999998854422 223222 6999999997775444333221 1 111 122
Q ss_pred eEEEEecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008761 110 PVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELLNL 147 (554)
Q Consensus 110 PIIVLSs~-~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~ 147 (554)
-.|++.-. ...-.+.+.+.-|+.++|.||++...|+..
T Consensus 82 d~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 82 DFVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred cceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHH
Confidence 34444322 223346678899999999999998877663
No 107
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=89.63 E-value=13 Score=32.39 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=64.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 33 VRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~-~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+||.||.--..-+..+..++.. .++++. .+. +.+.+....+.. ... ++.| ++.+... ..+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~--~~~-~~~~-----------~~~ll~~---~~~ 63 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY--GIP-VYTD-----------LEELLAD---EDV 63 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT--TSE-EESS-----------HHHHHHH---TTE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh--ccc-chhH-----------HHHHHHh---hcC
Confidence 5788888877777777777776 467765 444 444444443333 344 4433 2333332 345
Q ss_pred eEEEEecCC--CHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHH
Q 008761 110 PVIMMSAQD--EVSVVVKCLRLGAADYLVKPL--RTNELLNLWTHM 151 (554)
Q Consensus 110 PIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~--~~eeL~~~L~~l 151 (554)
-+|+++... ..+.+.++++.|..=|+.||+ +.+++.+.++..
T Consensus 64 D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 64 DAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp SEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 566666543 466899999999999999998 456666555443
No 108
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=88.82 E-value=7.2 Score=37.73 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=54.1
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC--------cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHH
Q 008761 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT--------KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKC 126 (554)
Q Consensus 56 g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~m--------DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eA 126 (554)
+..+. .+.+..++.+.... .+|+|.+.-..|.. .|++.++++++.. ..+||++..+- +.+.+.++
T Consensus 104 ~~~~g~~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~v~a~GGI-~~~~i~~~ 177 (212)
T PRK00043 104 DAIIGLSTHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--GDIPIVAIGGI-TPENAPEV 177 (212)
T ss_pred CCEEEEeCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHH
Confidence 44444 55677777776643 58999987655543 3688999998753 34898887765 56788899
Q ss_pred HHcCCCEEEe
Q 008761 127 LRLGAADYLV 136 (554)
Q Consensus 127 L~aGA~DyL~ 136 (554)
+.+||+.+..
T Consensus 178 ~~~Ga~gv~~ 187 (212)
T PRK00043 178 LEAGADGVAV 187 (212)
T ss_pred HHcCCCEEEE
Confidence 9999999964
No 109
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=87.70 E-value=7.6 Score=45.63 Aligned_cols=117 Identities=8% Similarity=0.054 Sum_probs=76.4
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCCC--cHHHHHHHHHh
Q 008761 32 KVRILLCD----NDSNSSDAVFSLLVKCSYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVD----Dd~~~r~~L~~lL~~~g~eV~~---A~dg~EALe~L~~~~~~PDLILLDi~MP~m--DGlElLr~Ir~ 102 (554)
.++|+|.- .+..-...+..+|...||+|.. ..+.+++++.+.+. .+|+|++-..+... ..-++++.|++
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~--~a~ivvlcs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEN--DVHVVGVSSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHc--CCCEEEEeccchhhHHHHHHHHHHHHh
Confidence 45666542 2233334456677888999873 34688898888876 79999987655432 34578888887
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
.. ..+++ |++.+..-.+....+.++|+++||..-.+..+++..+.+.+
T Consensus 660 ~G-~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 660 LG-REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred cC-CCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 53 12233 44554423333456788999999998888877776665554
No 110
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=87.23 E-value=7 Score=38.37 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=64.2
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC-cH-HHHHHHHHhc
Q 008761 33 VRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPMT-KG-LKMLKYITRD 103 (554)
Q Consensus 33 irVLIV----DDd~~~r~~L~~lL~~~g~eV~~A~---dg~EALe~L~~~~~~PDLILLDi~MP~m-DG-lElLr~Ir~~ 103 (554)
.+||+. |.+..=...+..+|+..||+|+... ..++.++.+.+. +||+|.+-..|+.. .. .++++.|++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~--~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE--KPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 355554 3344445566777888999988433 578888888876 89999999877653 22 4577777775
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.....++|++=...-..+ -+-+.||+.|-.
T Consensus 163 ~~~~~v~i~vGG~~~~~~---~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFMVGGAPVTQD---WADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEEEEChhcCHH---HHHHhCCcEEeC
Confidence 333345655443333332 356779998864
No 111
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=87.20 E-value=8 Score=38.19 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=59.3
Q ss_pred HHHHHHHhh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC-------CCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVK-CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD-------LPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~-~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~-------MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+.+.+.+ .+..+. .+.+.+++...... .+|+|.+... ......++++++|+.. ..+|||...+
T Consensus 108 ~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~---~~iPvia~GG 181 (221)
T PRK01130 108 AELVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPEEPDFALLKELLKA---VGCPVIAEGR 181 (221)
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh---CCCCEEEECC
Confidence 344445555 566554 66788888655443 5888866321 1223357889999874 3689998888
Q ss_pred CCCHHHHHHHHHcCCCEEEeC
Q 008761 117 QDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 117 ~~d~e~~~eAL~aGA~DyL~K 137 (554)
-.+.+.+.++++.||+.++.=
T Consensus 182 I~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 182 INTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCCHHHHHHHHHCCCCEEEEc
Confidence 888899999999999988653
No 112
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=86.00 E-value=25 Score=36.50 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=80.8
Q ss_pred CcEEEEEeCCHH----HHHH--HHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCc--H---HHHHH
Q 008761 32 KVRILLCDNDSN----SSDA--VFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK--G---LKMLK 98 (554)
Q Consensus 32 kirVLIVDDd~~----~r~~--L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~mD--G---lElLr 98 (554)
-+++=|+-|+.. ..+. -.+.|-+.||.|. +..|..-|.++.... -.++|-+--|-.+ | -..++
T Consensus 107 wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~G----c~aVMPlgsPIGSg~Gl~n~~~l~ 182 (267)
T CHL00162 107 FVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIG----CATVMPLGSPIGSGQGLQNLLNLQ 182 (267)
T ss_pred eEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcC----CeEEeeccCcccCCCCCCCHHHHH
Confidence 567777754422 2222 3446667899987 556777776665443 2345555555322 3 35677
Q ss_pred HHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHHHHHHh
Q 008761 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL-----VKPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL-----~KP~~~eeL~~~L~~llr~~rl~ 158 (554)
.|.+. ..+|||+=.+-...+.+.+||++|++..| .|--++.++...++..+..-|+.
T Consensus 183 ~i~e~---~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR~A 244 (267)
T CHL00162 183 IIIEN---AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGRLA 244 (267)
T ss_pred HHHHc---CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHHHH
Confidence 77765 67999998888999999999999999985 45567778877777776655543
No 113
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.18 E-value=9.8 Score=32.92 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=56.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+||||.........+...+++.|+++... .........+...-.++|+||+=...-.-+-...++..-.. .++|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk---~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK---YGIP 77 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH---cCCc
Confidence 58999998888899999999999987766 21111211222221268999987766555555555555433 6789
Q ss_pred EEEEecCCCHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCL 127 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL 127 (554)
+++.-+. ......++|
T Consensus 78 ~~~~~~~-~~~~l~~~l 93 (97)
T PF10087_consen 78 IIYSRSR-GVSSLERAL 93 (97)
T ss_pred EEEECCC-CHHHHHHHH
Confidence 9877543 333444444
No 114
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=83.62 E-value=11 Score=33.71 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCC-cHHHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 44 SSDAVFSLLVKCSYQVTS--VRSPRQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~--A~dg~EALe~L~~~~~~PDLILLDi~MP~m-DGlElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
-...+...|.+.|++|.. ....++.++.+... .+||+|.+.+..... ...++++.|++.. ++++||+-..+...
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~--p~~~iv~GG~~~t~ 80 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVVGGPHATF 80 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHC--CCCEEEECCcchhh
Confidence 355678888888887663 33566777777652 279999999865554 3577888898764 56666654443221
Q ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 121 SVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
.....+..-..||+..--.-.-+...++.
T Consensus 81 -~p~~~~~~~~~D~vv~GEgE~~~~~l~~~ 109 (127)
T cd02068 81 -FPEEILEEPGVDFVVIGEGEETFLKLLEE 109 (127)
T ss_pred -CHHHHhcCCCCCEEEECCcHHHHHHHHHH
Confidence 11222444556788875443344444443
No 115
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=83.20 E-value=11 Score=39.55 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=61.9
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCC-----CCCcHHHHHHHHHhccCCCCceEEEEecCCCHH
Q 008761 48 VFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDL-----PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVS 121 (554)
Q Consensus 48 L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~M-----P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e 121 (554)
+...|+..|..|. .+.+.++|..+... .+|.|++.-.- ....-+.++.+++.. ..+|||+-.+-.+..
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPviaaGGI~~~~ 174 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVIAAGGIADGR 174 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEEEECCCCCHH
Confidence 5556666676655 67888888777654 58999984421 122358889998864 468999888888888
Q ss_pred HHHHHHHcCCCEEEeC
Q 008761 122 VVVKCLRLGAADYLVK 137 (554)
Q Consensus 122 ~~~eAL~aGA~DyL~K 137 (554)
.+..+|.+||+....=
T Consensus 175 ~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 175 GMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHHHcCCCEeecc
Confidence 8999999999988653
No 116
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=83.03 E-value=28 Score=35.75 Aligned_cols=90 Identities=14% Similarity=0.051 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEec---CCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 42 SNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV---DLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 42 ~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi---~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
......|.......|.++. .+.+.+|+...+.. .+|+|-+.- ..-..+ ++.+.+|...-+ ...++|..++-
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p-~~~~vIaegGI 220 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIP-SDRLVVSESGI 220 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCC-CCCEEEEEeCC
Confidence 3344444444456688755 78899988766543 588887542 111223 666677665321 23588889998
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 008761 118 DEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 118 ~d~e~~~eAL~aGA~DyL~ 136 (554)
.+.+.+.+++.+||+.++.
T Consensus 221 ~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 8899999999999999864
No 117
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=81.81 E-value=12 Score=36.70 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=59.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g--~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
-+++|+.+++.+++.+.+++...| |.|....+.+++++.++..+..|.|+..+..+.+ .++-++..... .-|
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~----~~p 105 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK----GEP 105 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc----CCc
Confidence 378999999999999999999875 7899999999999999854457888888888766 55444443321 235
Q ss_pred EEEEec
Q 008761 111 VIMMSA 116 (554)
Q Consensus 111 IIVLSs 116 (554)
++++-+
T Consensus 106 ~LIvvG 111 (176)
T PRK03958 106 LLIVVG 111 (176)
T ss_pred EEEEEc
Confidence 665544
No 118
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=81.33 E-value=3.9 Score=40.50 Aligned_cols=77 Identities=25% Similarity=0.357 Sum_probs=53.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCcH--HHHHHHHHhccCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD--LPMTKG--LKMLKYITRDKELQ 107 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~--MP~mDG--lElLr~Ir~~~~~~ 107 (554)
+++|||||.--.+--.|...|.+.|.+|.+..+....++.+... +||.|++.-- -|.-.| .++++++. .
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~--~pd~iviSPGPG~P~d~G~~~~~i~~~~-----~ 73 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEAL--KPDAIVISPGPGTPKDAGISLELIRRFA-----G 73 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhc--CCCEEEEcCCCCChHHcchHHHHHHHhc-----C
Confidence 35899999999999999999999998887666554344445444 7999999653 333223 44555541 5
Q ss_pred CceEEEEe
Q 008761 108 RIPVIMMS 115 (554)
Q Consensus 108 ~iPIIVLS 115 (554)
.+||+=+.
T Consensus 74 ~~PiLGVC 81 (191)
T COG0512 74 RIPILGVC 81 (191)
T ss_pred CCCEEEEC
Confidence 67988554
No 119
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=81.13 E-value=12 Score=38.33 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=72.2
Q ss_pred CcEEEEEeCCHH----HHHHH--HHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCc-----HHHHHH
Q 008761 32 KVRILLCDNDSN----SSDAV--FSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK-----GLKMLK 98 (554)
Q Consensus 32 kirVLIVDDd~~----~r~~L--~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~mD-----GlElLr 98 (554)
-+++=|+.|+.. ..+.| .+.|-+.||.|. +..|..-|.++.... . .++|-+--|-.+ -...++
T Consensus 93 wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~G---c-aavMPlgsPIGSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAG---C-AAVMPLGSPIGSGRGIQNPYNLR 168 (247)
T ss_dssp EEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-----SEBEEBSSSTTT---SSTHHHHH
T ss_pred eEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCC---C-CEEEecccccccCcCCCCHHHHH
Confidence 578877777653 33333 346678899987 556777777665543 2 235555555333 246778
Q ss_pred HHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHHHHHH
Q 008761 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK-----PLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K-----P~~~eeL~~~L~~llr~~rl 157 (554)
.|.+. ..+|||+=.+-.....+.+||++|++..|+- --++-.+....+..+..-|+
T Consensus 169 ~i~~~---~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR~ 229 (247)
T PF05690_consen 169 IIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGRL 229 (247)
T ss_dssp HHHHH---GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHHH
Confidence 88765 4899999888899999999999999999875 34555566666655554443
No 120
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=80.40 E-value=27 Score=34.40 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=57.1
Q ss_pred HHHHHhhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEecC-------CCCCcHHHHHHHHHhccCCCCceEEEEecCC
Q 008761 48 VFSLLVKCS-YQVT-SVRSPRQVIDALNAEGSDIDLILAEVD-------LPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 48 L~~lL~~~g-~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~-------MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
+.+.+.+.+ ..+. .+.+.+++...... .+|+|.+... .....++++++.|++. ..+|||...+-.
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~---~~ipvia~GGI~ 187 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKA---LGIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHh---cCCCEEEeCCCC
Confidence 333333344 5443 56788888666543 5888865321 1122457889999864 368999888888
Q ss_pred CHHHHHHHHHcCCCEEEeC
Q 008761 119 EVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 119 d~e~~~eAL~aGA~DyL~K 137 (554)
+.+.+.+++.+||+.++.-
T Consensus 188 ~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 188 SPEQAAKALELGADAVVVG 206 (219)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 8899999999999998763
No 121
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=79.35 E-value=43 Score=35.94 Aligned_cols=120 Identities=14% Similarity=0.172 Sum_probs=79.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHH------hhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHH
Q 008761 32 KVRILLCDNDSNSSDAVFSLL------VKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLK 98 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL------~~~g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr 98 (554)
-+++=|+.|++...-.+...+ -+.||.| +++.|...|.++... .| +.++-+--| +..--+.++
T Consensus 167 ~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~ 242 (326)
T PRK11840 167 LVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIR 242 (326)
T ss_pred eEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHH
Confidence 477777777665544333333 3458987 377788888777654 35 444432222 233446777
Q ss_pred HHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHHh
Q 008761 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~-----KP~~~eeL~~~L~~llr~~rl~ 158 (554)
.+.+. ..+|||+=.+-...+.+.+||++||+..|. |--++-.+....+..+..-|+.
T Consensus 243 ~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr~a 304 (326)
T PRK11840 243 LIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGRLA 304 (326)
T ss_pred HHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHHHH
Confidence 77765 579998888888899999999999999965 4455666666666666554443
No 122
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=77.71 E-value=29 Score=38.80 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHhhCC-CEEEEEC------CHHHHHHHHHhcCCCceEEEEecCCCCCc-HHHHHHHHHhccCCCCceEE
Q 008761 41 DSNSSDAVFSLLVKCS-YQVTSVR------SPRQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 41 d~~~r~~L~~lL~~~g-~eV~~A~------dg~EALe~L~~~~~~PDLILLDi~MP~mD-GlElLr~Ir~~~~~~~iPII 112 (554)
.|.-...|...|+..| ++|.... +.++..+.+.+. .||||.+-..-+... ..++++.+++.. +.++||
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~--P~~~iV 96 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERL--PNAIIV 96 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHC--CCCEEE
Confidence 4667788999999889 6776442 234455566655 799999987666543 457778888754 666666
Q ss_pred EEecCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLR-LGAADYLVKPLRTNELLNLWTHM 151 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~-aGA~DyL~KP~~~eeL~~~L~~l 151 (554)
+=..+.. ....++|. ....||+..--.-..+.+.++.+
T Consensus 97 ~GG~h~t-~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 97 LGGIHPT-FMFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred EcCCCcC-cCHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 4443333 22334554 45678888765555555555544
No 123
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=76.69 E-value=25 Score=36.49 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=64.3
Q ss_pred HHHHHHhhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHH
Q 008761 47 AVFSLLVKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (554)
Q Consensus 47 ~L~~lL~~~g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~ 124 (554)
.|++.|......+ +.....-.+.+.+... .+|.|++|++-...+--++...|+......-.|+|=+ ...+...+.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRv-p~~~~~~i~ 84 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRP-VEGSKPLIK 84 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEEC-CCCCHHHHH
Confidence 3566665543322 2222334556666554 6999999999888887777777766543344455544 445677889
Q ss_pred HHHHcCCCEEEeCCCCH-HHHHHHHH
Q 008761 125 KCLRLGAADYLVKPLRT-NELLNLWT 149 (554)
Q Consensus 125 eAL~aGA~DyL~KP~~~-eeL~~~L~ 149 (554)
++|++||...+.--+.. ++....++
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 99999999999866654 45444443
No 124
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=76.68 E-value=22 Score=36.51 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=65.1
Q ss_pred HHHHHHHHhhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHH
Q 008761 45 SDAVFSLLVKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSV 122 (554)
Q Consensus 45 r~~L~~lL~~~g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~ 122 (554)
...|++.|......+ +.....-.+.+.+... .+|.|++|++-..+|--++...|+......-.|+|=+ ...+...
T Consensus 7 ~n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRv-p~~~~~~ 83 (256)
T PRK10558 7 PNKFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRV-PTNEPVI 83 (256)
T ss_pred CHHHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHH
Confidence 344666666543322 2222334556666554 6999999999888887777777766543333445444 4456788
Q ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHH
Q 008761 123 VVKCLRLGAADYLVKPLR-TNELLNLWT 149 (554)
Q Consensus 123 ~~eAL~aGA~DyL~KP~~-~eeL~~~L~ 149 (554)
+.++|+.||..++.-=+. .++....++
T Consensus 84 i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 84 IKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred HHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 899999999999875444 455554443
No 125
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=75.86 E-value=24 Score=33.87 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=50.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC--------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPM--------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~MP~--------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~ 132 (554)
.+.+.+++.+... . .+|+|.++...|. ..|++.++++.+.. +.+||+++.+- +.+.+.+++..|++
T Consensus 102 s~h~~~e~~~a~~-~--g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 102 STHNLEELAEAEA-E--GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred eCCCHHHHHHHhH-c--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 6778888776543 3 5899998776552 24889999987642 35898877665 56778889999998
Q ss_pred EEEe
Q 008761 133 DYLV 136 (554)
Q Consensus 133 DyL~ 136 (554)
.+..
T Consensus 176 gva~ 179 (196)
T TIGR00693 176 GVAV 179 (196)
T ss_pred EEEE
Confidence 8754
No 126
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=75.84 E-value=27 Score=35.72 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=63.6
Q ss_pred HHHHHhhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHH
Q 008761 48 VFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (554)
Q Consensus 48 L~~lL~~~g--~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~e 125 (554)
|+..|.... +-++....-....+++... .+|.|++|++-...+--++...|+........++|=+.. .+...+.+
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~-~~~~~i~~ 79 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAI-GDPVLIKQ 79 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCC-CCHHHHHH
Confidence 445554432 2233333344566666655 699999999888788878877776643223344444433 45567899
Q ss_pred HHHcCCCEEEe-CCCCHHHHHHHHHHH
Q 008761 126 CLRLGAADYLV-KPLRTNELLNLWTHM 151 (554)
Q Consensus 126 AL~aGA~DyL~-KP~~~eeL~~~L~~l 151 (554)
+|+.||+.++. |--+.+++...++.+
T Consensus 80 ~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 80 LLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred HhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 99999999865 445667766555443
No 127
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=75.74 E-value=21 Score=31.21 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=51.1
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC-cHHHHHHHHHhccCCC-CceEEE
Q 008761 39 DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQ-RIPVIM 113 (554)
Q Consensus 39 DDd~~~r~~L~~lL~~~g~eV~~A~---dg~EALe~L~~~~~~PDLILLDi~MP~m-DGlElLr~Ir~~~~~~-~iPIIV 113 (554)
|-.+.-...+..+|+..|+++.... ..++.++.+... +||+|.+...+... ..++.+..+++.. + +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~--p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKEL--GIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhc--CCCCeEEE
Confidence 4556666778888999999987443 567777777765 89999999877654 3466666776653 3 566665
Q ss_pred Ee
Q 008761 114 MS 115 (554)
Q Consensus 114 LS 115 (554)
=.
T Consensus 86 GG 87 (125)
T cd02065 86 GG 87 (125)
T ss_pred eC
Confidence 44
No 128
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.33 E-value=40 Score=29.19 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=56.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
..+|++||.++...+. +...|+.+.... .-.+.++.+.-. +.+.|++...- +..-+.++..+++.. +..+
T Consensus 21 ~~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~-d~~n~~~~~~~r~~~--~~~~ 91 (116)
T PF02254_consen 21 GIDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGIE--KADAVVILTDD-DEENLLIALLARELN--PDIR 91 (116)
T ss_dssp TSEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTGG--CESEEEEESSS-HHHHHHHHHHHHHHT--TTSE
T ss_pred CCEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCcc--ccCEEEEccCC-HHHHHHHHHHHHHHC--CCCe
Confidence 3689999999876443 344567766433 234556655544 68888887652 234456666776643 5577
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
||+... +.+....+..+||+..+.
T Consensus 92 ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 92 IIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp EEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred EEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 776655 334455667789887663
No 129
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=74.93 E-value=29 Score=37.21 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=61.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE---------------EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHH
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ---------------VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKM 96 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e---------------V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlEl 96 (554)
.++++||-+.+.-...|.+.+...|+. |.......+...++. .-|++++--.....-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~----~aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA----IADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH----hCCEEEECCCcCCCCCCCH
Confidence 456777777665445677776665543 222333334444443 2477665322212234455
Q ss_pred HHHHHhccCCCCceEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 97 LKYITRDKELQRIPVIMMSAQDEVSVVVKCL-RLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 97 Lr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL-~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++.+. ..+|||+-....+...+.+.+ .. +++..|-+.++|...+..++..
T Consensus 338 lEAma-----~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 338 LEPAA-----FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLTD 388 (425)
T ss_pred HHHHH-----hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhcC
Confidence 55554 467888533223344444443 33 3566678889999988888753
No 130
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=74.54 E-value=31 Score=36.55 Aligned_cols=83 Identities=24% Similarity=0.264 Sum_probs=56.5
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEec-CC----C-CC-cHHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 48 VFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DL----P-MT-KGLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 48 L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi-~M----P-~m-DGlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
+.+.|...|..|. .+.+.++|...++. .+|+|++-= +- . .. +-+.++..++.. .++|||.=.+-.+
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~---~~iPViaAGGI~d 201 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA---VDIPVIAAGGIAD 201 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--S
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhh---cCCcEEEecCcCC
Confidence 4456777787665 89999999988765 499999863 22 2 22 257788888775 5689998878888
Q ss_pred HHHHHHHHHcCCCEEEe
Q 008761 120 VSVVVKCLRLGAADYLV 136 (554)
Q Consensus 120 ~e~~~eAL~aGA~DyL~ 136 (554)
...+..+|.+||+....
T Consensus 202 g~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 202 GRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHcCCCEeec
Confidence 88899999999999865
No 131
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=74.12 E-value=37 Score=36.61 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=44.6
Q ss_pred ceEEEEecCCCCCcHH-HHHHHHHhccCCCCceEEEEe-cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008761 79 IDLILAEVDLPMTKGL-KMLKYITRDKELQRIPVIMMS-AQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (554)
Q Consensus 79 PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~iPIIVLS-s~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~l 151 (554)
.+.+|++..-...=-+ .++..+ . ....|+... ...+...+.+.|+.|+++.+.+|-+..++......+
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~-~----~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~ 158 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL-G----QSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALI 158 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh-c----CCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHH
Confidence 3666665543333223 355555 2 334555444 446677899999999999999999999987655443
No 132
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=73.79 E-value=31 Score=32.41 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=52.2
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC--------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHH
Q 008761 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM--------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKC 126 (554)
Q Consensus 56 g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~--------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eA 126 (554)
+..+. .+.+..++.+.+.. .+|.|++....|. ..|++.++++++. ..+||++..+- +.+.+.++
T Consensus 95 ~~~~g~~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi-~~~~i~~~ 167 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGI-TPENAAEV 167 (196)
T ss_pred CCEEEeeCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHH
Confidence 34444 44567777766543 4899998755442 3567888888764 56898888765 45788899
Q ss_pred HHcCCCEEEe
Q 008761 127 LRLGAADYLV 136 (554)
Q Consensus 127 L~aGA~DyL~ 136 (554)
+.+||+.+..
T Consensus 168 ~~~Ga~~i~~ 177 (196)
T cd00564 168 LAAGADGVAV 177 (196)
T ss_pred HHcCCCEEEE
Confidence 9999998854
No 133
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.54 E-value=37 Score=35.57 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=62.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhC----C-CEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 35 ILLCDNDSNSSDAVFSLLVKC----S-YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~----g-~eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
|||-|++..+. .+...+... + ..| +.+.+.+++.+.+.. .+|+|+||-..|. +--++++.++.... .+
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~-~~ 230 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGL-RE 230 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCc-CC
Confidence 78888886655 455555421 2 223 478899999999975 4899999965433 22334444543221 12
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
-..|..|+.-+.+.+.+..+.|++-+.
T Consensus 231 ~~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 231 RVKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred CEEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 345677878888888888899987664
No 134
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=72.93 E-value=56 Score=32.16 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CcHHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 48 VFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 48 L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~-------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
+.+.+...+..+. .+.+.+++..... . ..|.|+++-.-.+ ...+++++++++. ..+||++.-+-..
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~-~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~---~~~Pvi~~GGI~~ 167 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEA-A--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDA---VDIPVIAAGGIAD 167 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHH-c--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH---hCCCEEEECCCCC
Confidence 3344444555554 4556666655443 3 5898888643111 2457788888764 4689998888777
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008761 120 VSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 120 ~e~~~eAL~aGA~DyL~K 137 (554)
.+.+.+++..||+.++.-
T Consensus 168 ~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 168 GRGIAAALALGADGVQMG 185 (236)
T ss_pred HHHHHHHHHcCCcEEEEc
Confidence 788999999999998764
No 135
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=72.88 E-value=9.9 Score=39.11 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=51.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEecCCCCC--------------
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEVDLPMT-------------- 91 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-------dg~EALe~L~~~~~~PDLILLDi~MP~m-------------- 91 (554)
|||||+..+..+...|...|...|++|.... +.++..+.+... +||+||-=..+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~--~pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAF--KPDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHh--CCCeEeccceeecHHhhhhChhhhHHHh
Confidence 5999999999999999999999898887552 566666777666 79999865544322
Q ss_pred -cHHHHHHHHHhccCCCCceEEEEecC
Q 008761 92 -KGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 92 -DGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
.+...|.++-. ...+++|.+|+.
T Consensus 79 ~~~~~~la~~~~---~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACK---ERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHH---HCT-EEEEEEEG
T ss_pred hHHHHHHHHHHH---HcCCcEEEeecc
Confidence 22222222222 256899999873
No 136
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=72.15 E-value=54 Score=35.85 Aligned_cols=108 Identities=11% Similarity=0.221 Sum_probs=67.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
.++++||.|.+. +..|.++.......+.-.-..++..+.+.. .|++++=-. .+.-|+.+++.+. ..+||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA-----~G~PV 358 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA-----SGVPV 358 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH-----cCCCE
Confidence 578888887653 455666555433222223345677777653 588776432 2334666776664 56898
Q ss_pred EEEecCCCHHHHHHHHHc---CCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRL---GAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~a---GA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|... ... ..+.+.. |-.+++..|-+.++|...|..++..
T Consensus 359 I~s~-~gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 359 VAAR-AGG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred EEcC-CCC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 8433 232 2334445 8899999999999999999888753
No 137
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=72.09 E-value=31 Score=36.29 Aligned_cols=86 Identities=12% Similarity=0.165 Sum_probs=58.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEec---------------------------------CC--CCCcHHHHHHHHHhccC
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEV---------------------------------DL--PMTKGLKMLKYITRDKE 105 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi---------------------------------~M--P~mDGlElLr~Ir~~~~ 105 (554)
-+++.+||+..... .+|+|=.=+ .. ..-.++++|+++.+.
T Consensus 118 D~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~-- 192 (283)
T cd04727 118 GARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL-- 192 (283)
T ss_pred cCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh--
Confidence 56688888888865 378775543 00 123478999999875
Q ss_pred CCCceEE--EEecCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 008761 106 LQRIPVI--MMSAQDEVSVVVKCLRLGAADYLVK-----PLRTNELLNLWTHMW 152 (554)
Q Consensus 106 ~~~iPII--VLSs~~d~e~~~eAL~aGA~DyL~K-----P~~~eeL~~~L~~ll 152 (554)
..+||| ....-...+.+.+++++||+.++.= .-++.+....+...+
T Consensus 193 -~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai 245 (283)
T cd04727 193 -GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAV 245 (283)
T ss_pred -cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHH
Confidence 468998 5566668899999999999998643 334444444444433
No 138
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=71.75 E-value=32 Score=33.35 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=54.8
Q ss_pred hCCCEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008761 54 KCSYQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (554)
Q Consensus 54 ~~g~eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~ 132 (554)
..+..+ .-+.+.+|+.+.+.. .+|+|-++- .+.. |.++++.|+.. .+.+|++.+.+- +.+.+.+.+++||+
T Consensus 95 ~~~~~~i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~--~~~~p~~a~GGI-~~~n~~~~~~~G~~ 166 (190)
T cd00452 95 RAGIPLLPGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGP--FPQVRFMPTGGV-SLDNAAEWLAAGVV 166 (190)
T ss_pred HcCCcEECCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhh--CCCCeEEEeCCC-CHHHHHHHHHCCCE
Confidence 334433 356689999888754 589999864 3333 99999999864 356888877665 77889999999987
Q ss_pred EEEeC
Q 008761 133 DYLVK 137 (554)
Q Consensus 133 DyL~K 137 (554)
.+..-
T Consensus 167 ~v~v~ 171 (190)
T cd00452 167 AVGGG 171 (190)
T ss_pred EEEEc
Confidence 77543
No 139
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=71.73 E-value=37 Score=34.96 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=76.3
Q ss_pred CcEEEEEeCCHHH----HHH--HHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCcH-----HHHHH
Q 008761 32 KVRILLCDNDSNS----SDA--VFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG-----LKMLK 98 (554)
Q Consensus 32 kirVLIVDDd~~~----r~~--L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDG-----lElLr 98 (554)
-+++=|+-|+... .+. -.++|-++||.|. +..|.--|.++.... =..+|-+.-|-.+| -..|+
T Consensus 100 wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~G----caavMPl~aPIGSg~G~~n~~~l~ 175 (262)
T COG2022 100 WIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAG----CAAVMPLGAPIGSGLGLQNPYNLE 175 (262)
T ss_pred eEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcC----ceEeccccccccCCcCcCCHHHHH
Confidence 5777777766432 222 3456778899987 555666666655432 23466666664333 35677
Q ss_pred HHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHHHHHHHH
Q 008761 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP-----LRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP-----~~~eeL~~~L~~llr~~r 156 (554)
.|.+. ..+||||=.+-.....+..+|++|++..|.-- -++-.+.......+..-+
T Consensus 176 iiie~---a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 176 IIIEE---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEAGR 235 (262)
T ss_pred HHHHh---CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHHhH
Confidence 77764 58999999999999999999999999998753 233344444444444333
No 140
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=71.33 E-value=1e+02 Score=31.06 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=55.4
Q ss_pred CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-------CCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHH
Q 008761 57 YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-------MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (554)
Q Consensus 57 ~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP-------~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~ 128 (554)
.-|. ++.+.+++.+..+. .+|-|.+.--.| .-.|++.++++... ..+|+|.|.+ .+.+.+.+.++
T Consensus 105 ~iIG~S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~---~~iP~vAIGG-i~~~nv~~v~~ 177 (211)
T COG0352 105 LIIGLSTHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIREL---VNIPVVAIGG-INLENVPEVLE 177 (211)
T ss_pred CEEEeecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHh---CCCCEEEEcC-CCHHHHHHHHH
Confidence 3454 77789999888654 499999877444 45699999999875 4589998887 45677889999
Q ss_pred cCCCEEE
Q 008761 129 LGAADYL 135 (554)
Q Consensus 129 aGA~DyL 135 (554)
.||+..-
T Consensus 178 ~Ga~gVA 184 (211)
T COG0352 178 AGADGVA 184 (211)
T ss_pred hCCCeEE
Confidence 9999873
No 141
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=71.05 E-value=40 Score=34.50 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=63.4
Q ss_pred HHHHHhhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHH
Q 008761 48 VFSLLVKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (554)
Q Consensus 48 L~~lL~~~g~e--V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~e 125 (554)
|++.|...... ++.....-.+.+++... .+|.|++|.+-..+|--++...|+......-.|+|=+ ...+...+.+
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRv-p~~~~~~i~r 79 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRP-PWNEPVIIKR 79 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHHHHH
Confidence 44555443322 22223334566666554 6999999999888887777777766543333455544 4457788899
Q ss_pred HHHcCCCEEEeCCCC-HHHHHHHHH
Q 008761 126 CLRLGAADYLVKPLR-TNELLNLWT 149 (554)
Q Consensus 126 AL~aGA~DyL~KP~~-~eeL~~~L~ 149 (554)
+|+.||..++.-=+. .++..+.++
T Consensus 80 ~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 80 LLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred HhcCCCCEEEecCcCCHHHHHHHHH
Confidence 999999999875454 455554443
No 142
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=70.29 E-value=60 Score=32.03 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC-cH--HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDID-LILAEVDLPMT-KG--LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PD-LILLDi~MP~m-DG--lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+.++.+.+. ..+ +++.|+.--++ .| +++++++.+. ..+|||+-..-.+.+.+.++++.||+.++.
T Consensus 146 ~~~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 445555656554 466 67788754332 22 6888888764 578988888888888888899999999875
No 143
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=70.13 E-value=60 Score=36.36 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHhhC-CCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCC------------C
Q 008761 31 SKVRILLCDND----SNSSDAVFSLLVKC-SYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPM------------T 91 (554)
Q Consensus 31 skirVLIVDDd----~~~r~~L~~lL~~~-g~e--V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~------------m 91 (554)
..+.+++||.. ..+...+..+-... +.. +..+.+.++|..++.. ..|.|.+.+. |+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g-~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIG-PGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCC-CCccccceeecCCCc
Confidence 35778888864 23344444444443 333 3366688888888865 4788865321 11 2
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
.-++++..+........+|||.=.+-.....+.+||.+||+..+.=
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 2355665555432224688887778888899999999999988653
No 144
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=69.52 E-value=89 Score=29.95 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=56.6
Q ss_pred HHHHHHHHhhCCCEEE----EECCHHHHHHHHHhcCCCceEEEEecC-----CCCCcHHHHHHHHHhccCCCCceEEEEe
Q 008761 45 SDAVFSLLVKCSYQVT----SVRSPRQVIDALNAEGSDIDLILAEVD-----LPMTKGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~----~A~dg~EALe~L~~~~~~PDLILLDi~-----MP~mDGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
...+.+.+++.|..+. .+.+..++++.+. . ..|.|.+... .....+.+.++++++. .++||++..
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~--~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~G 165 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L--GVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVAG 165 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C--CCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEEC
Confidence 3445555666676543 5558888887443 3 5898887421 1124567777877753 467877665
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 008761 116 AQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 116 s~~d~e~~~eAL~aGA~DyL~K 137 (554)
+- ..+.+.++++.||+.++.-
T Consensus 166 GI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 166 GI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred Cc-CHHHHHHHHhcCCCEEEEe
Confidence 54 4788999999999988653
No 145
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=69.52 E-value=36 Score=35.87 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=43.1
Q ss_pred cHHHHHHHHHhccCCCCceEE--EEecCCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVI--MMSAQDEVSVVVKCLRLGAADYL-----VKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPII--VLSs~~d~e~~~eAL~aGA~DyL-----~KP~~~eeL~~~L~~llr 153 (554)
.++++++++.+. ..+||| ....-...+.+..++++||+.++ .|.-++.+....+...+.
T Consensus 184 ~~~elLkei~~~---~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 184 VPVELLLEVLKL---GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred CCHHHHHHHHHh---CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 588999999875 468998 55666688999999999999985 444455555554444443
No 146
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=69.15 E-value=22 Score=36.96 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=56.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIV 113 (554)
.|-+.-.++.+...+..+|...-|.+....++++.++.+..+...+|.+|+..... -..+...|.+.. .-.|+|+
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~---~~~~~~~L~e~g--~LLPaVi 76 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPL---LPPLFNQLYEQG--ILLPAVI 76 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTST---THHHHHHHHHCT------EEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCC---cHHHHHHHHHcC--ccccEEE
Confidence 45556667888999999999888999999999999999987767899999987543 456777888765 5579999
Q ss_pred EecC
Q 008761 114 MSAQ 117 (554)
Q Consensus 114 LSs~ 117 (554)
+...
T Consensus 77 l~~~ 80 (283)
T PF07688_consen 77 LGSS 80 (283)
T ss_dssp ES--
T ss_pred EecC
Confidence 9764
No 147
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=69.06 E-value=1.2e+02 Score=32.18 Aligned_cols=111 Identities=10% Similarity=0.237 Sum_probs=66.4
Q ss_pred CcEEEEEeCCH--------HHHHHHHHHHhhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 32 KVRILLCDNDS--------NSSDAVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 32 kirVLIVDDd~--------~~r~~L~~lL~~~g~eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
.++++||.+.. ...+.+..+....+..|.... +.++..+.+.. -|++++--...+.-|+-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 46778877532 223344444444444444333 35566666653 58888744333334566666654
Q ss_pred hccCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy-L~KP~~~eeL~~~L~~llr~~ 155 (554)
..+|||. |.... ..+.+..|..+| +..|.+.++|.+.|..++...
T Consensus 300 -----~G~PVI~-s~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 300 -----AGKPVLA-STKGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLADP 345 (380)
T ss_pred -----cCCCEEE-eCCCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCH
Confidence 5678875 33332 234556688888 567889999999998887543
No 148
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=69.06 E-value=67 Score=31.52 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=53.7
Q ss_pred hhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEec---CCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHH
Q 008761 53 VKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV---DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (554)
Q Consensus 53 ~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi---~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~ 128 (554)
...|..+. .+.+.+++.+.... .+|.|.+-- ... ..+++++++|++.-. ..+|||...+-...+.+.+++.
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~-~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~~ 192 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTF-EVDLNTTERLAPLIP-KDVILVSESGISTPEDVKRLAE 192 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCcccc-CcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHHH
Confidence 44577654 56777776666543 578776541 111 134577788875311 3579998888888899999999
Q ss_pred cCCCEEEe
Q 008761 129 LGAADYLV 136 (554)
Q Consensus 129 aGA~DyL~ 136 (554)
+||+.++.
T Consensus 193 ~Ga~gviv 200 (217)
T cd00331 193 AGADAVLI 200 (217)
T ss_pred cCCCEEEE
Confidence 99999964
No 149
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=68.57 E-value=91 Score=33.42 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=64.3
Q ss_pred EEEEEeC----CHHHHHHHHHHHhhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCc--H
Q 008761 34 RILLCDN----DSNSSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTK--G 93 (554)
Q Consensus 34 rVLIVDD----d~~~r~~L~~lL~~~g-~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP-----------~mD--G 93 (554)
.++.||- ...+.+.+..+=+..+ ..|+ .+.+.++|..++.. ..|.|++-..=. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 6788863 3334444444433333 3333 47789999888765 488876442111 122 5
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
+..+..+... ..+|||.-.+-.....+.+||.+||+.+..=
T Consensus 190 l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 6668888764 4689998888888999999999999988553
No 150
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=68.44 E-value=78 Score=31.53 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=56.2
Q ss_pred HHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEec------CCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 45 SDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV------DLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi------~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
...|...++..+.-+. -+++.+|++...+. .+|+|=.=+ ......-++|+++|.+. .+|||.=...
T Consensus 81 l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~pvIaEGri 153 (192)
T PF04131_consen 81 LEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DVPVIAEGRI 153 (192)
T ss_dssp HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEEEESS-
T ss_pred HHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CCcEeecCCC
Confidence 3444445555543233 56789999998765 489886543 11234568999999863 6888877778
Q ss_pred CCHHHHHHHHHcCCCEEEeC
Q 008761 118 DEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 118 ~d~e~~~eAL~aGA~DyL~K 137 (554)
..++.+.+||++||+..++=
T Consensus 154 ~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 154 HTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp -SHHHHHHHHHTT-SEEEE-
T ss_pred CCHHHHHHHHhcCCeEEEEC
Confidence 89999999999999999763
No 151
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=68.30 E-value=91 Score=32.11 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=62.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCC--CEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCS--YQVTSV--RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g--~eV~~A--~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
|+++||.||.--..........|...+ ++++.. .+.+.|.+..... ...-+..| ++.+-+.
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~--~~~~~~~~-----------~~~ll~~-- 65 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF--GIAKAYTD-----------LEELLAD-- 65 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc--CCCcccCC-----------HHHHhcC--
Confidence 467899999977666665556665543 455533 4566565555443 22212222 1223222
Q ss_pred CCCceEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 106 LQRIPVIMMSA--QDEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 106 ~~~iPIIVLSs--~~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
+.+-+|+|.. ..-.+.+..||++|..=|+.||+. .++..+.++
T Consensus 66 -~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~ 112 (342)
T COG0673 66 -PDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVE 112 (342)
T ss_pred -CCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHH
Confidence 3455665554 344778999999999999999985 455554433
No 152
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=67.56 E-value=41 Score=32.72 Aligned_cols=74 Identities=11% Similarity=0.174 Sum_probs=48.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCE---EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQ---VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRD 103 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~e---V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~ 103 (554)
+..-+|+.||-++.....|++-++..+.. .+...|...++..+......+|||++|-=-..... .++++.|...
T Consensus 63 RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~ 140 (183)
T PF03602_consen 63 RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAEN 140 (183)
T ss_dssp TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHC
Confidence 33468999999999999999999877632 33567888888777443458999999942222232 5577777653
No 153
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=67.20 E-value=1.1e+02 Score=30.27 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=45.4
Q ss_pred ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 79 PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.|++++-....+.-|+.+++.+. ..+|||+ |.... ..+.+..|..+++.++.+.++|...+..++..
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a-----~G~Pvi~-~~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA-----AGVPVIA-SDIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH-----CCCCEEE-CCCCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC
Confidence 47776543323445667777775 4578775 33222 34556678889999999999999999988763
No 154
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=66.89 E-value=55 Score=36.90 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=55.6
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCcH
Q 008761 32 KVRILLCDN----DSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTKG 93 (554)
Q Consensus 32 kirVLIVDD----d~~~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP-----------~mDG 93 (554)
.+.++.||- +....+.++.+-+.. +..|. .+.+.++|..++.. ..|.|.+.+.-. +...
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a---Gad~I~vg~g~Gs~~~t~~~~~~g~p~ 329 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA---GADGLRIGMGSGSICITQEVCAVGRPQ 329 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc---CCCEEEECCcCCcccccchhccCCCCh
Confidence 355666663 333333333333332 22332 34566666666654 367775432110 1122
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
+..+..+........+|||.=.+-.....+.+|+.+||+..+.=
T Consensus 330 ~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 330 ASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred HHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 33333333222224688877667788889999999999998664
No 155
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=66.15 E-value=50 Score=34.24 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=66.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e--V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
.++++|+.+.+. +..+...+...+.. |.......+..+++.. .|++++=-. ...-|+.+++.+. ..+
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma-----~G~ 297 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA-----SGL 297 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH-----cCC
Confidence 357777776543 45566666655532 3333333444555542 477665322 2334667777765 567
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||+ |.... ..+.+..|..+++..|.+.++|...+..++..
T Consensus 298 Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 298 PVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVSD 338 (374)
T ss_pred CEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 8875 43333 33455678889999999999999999887653
No 156
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=65.83 E-value=20 Score=38.28 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCc-HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 65 PRQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILLDi~MP~mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.+++.+++.+. ..+|+|.+|+..+..+ -.+++++|++. ++.+|||+ ..-...+.+..++++||+..+
T Consensus 99 ~~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 99 YDFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 35566666542 1369999999987654 46789999874 35566554 223467788999999999865
No 157
>PRK07695 transcriptional regulator TenI; Provisional
Probab=65.05 E-value=92 Score=30.24 Aligned_cols=67 Identities=27% Similarity=0.349 Sum_probs=49.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCE
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~MP~-------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~D 133 (554)
++.+.+++.+... . ..|.|++....|. ..|++.++.+... ..+||+.+.+- +.+.+.+++..||+.
T Consensus 101 s~~s~e~a~~a~~-~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~~~Ga~g 173 (201)
T PRK07695 101 SVHSLEEAIQAEK-N--GADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVLAAGVSG 173 (201)
T ss_pred eCCCHHHHHHHHH-c--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHcCCCE
Confidence 6677777766543 3 5899988753332 2367888888764 46899988776 778889999999988
Q ss_pred E
Q 008761 134 Y 134 (554)
Q Consensus 134 y 134 (554)
+
T Consensus 174 v 174 (201)
T PRK07695 174 I 174 (201)
T ss_pred E
Confidence 7
No 158
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=64.89 E-value=77 Score=32.73 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=66.9
Q ss_pred HHHHHHhhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHH
Q 008761 47 AVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (554)
Q Consensus 47 ~L~~lL~~~g~eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~ 124 (554)
.++..|......|.... .---+.|.+... .+|-+++|.+--..|.-.++..|+.....+..|||=+.. .+...+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~a--GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATA--GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhc--CCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHHH
Confidence 46666765445555322 222344555544 699999999999999999999999877667778876554 4567899
Q ss_pred HHHHcCCCEEEeCCCCH
Q 008761 125 KCLRLGAADYLVKPLRT 141 (554)
Q Consensus 125 eAL~aGA~DyL~KP~~~ 141 (554)
++|+.||..+|..=++.
T Consensus 84 q~LD~GAqtlliPmV~s 100 (255)
T COG3836 84 QLLDIGAQTLLIPMVDT 100 (255)
T ss_pred HHHccccceeeeeccCC
Confidence 99999999999865554
No 159
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=64.75 E-value=39 Score=34.38 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=65.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~iP 110 (554)
.-.|||-....-+...|.+.|.+.|-+|+++.--++.|+..+.. .|++...=++..+.++. +++++|+.. ++.+-
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~--~p~~~t~v~Dv~d~~~~~~lvewLkk~--~P~lN 80 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE--NPEIHTEVCDVADRDSRRELVEWLKKE--YPNLN 80 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc--CcchheeeecccchhhHHHHHHHHHhh--CCchh
Confidence 45799999999999999999999999999988888889888876 78877666666677776 488899875 47777
Q ss_pred EEEEec
Q 008761 111 VIMMSA 116 (554)
Q Consensus 111 IIVLSs 116 (554)
|||=-+
T Consensus 81 vliNNA 86 (245)
T COG3967 81 VLINNA 86 (245)
T ss_pred eeeecc
Confidence 776544
No 160
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=64.06 E-value=87 Score=31.67 Aligned_cols=90 Identities=14% Similarity=0.059 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HHHHHHHHHhcCCCceEEEEecCCCCC------cHHHHHHHHHhccCCCCceEEEE
Q 008761 44 SSDAVFSLLVKCSYQVTSVRS---PRQVIDALNAEGSDIDLILAEVDLPMT------KGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~d---g~EALe~L~~~~~~PDLILLDi~MP~m------DGlElLr~Ir~~~~~~~iPIIVL 114 (554)
-...+...+.+.|.++..+-+ ..+.++.+... ...++++ -..|+. +-.+.++++++.. ...||++=
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~--~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~--~~~~i~v~ 191 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL--SPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV--GNKYLVVG 191 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh--CCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc--CCCCEEEe
Confidence 344566677788877653332 24455554444 4677777 445552 2245666776543 24565533
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 115 SAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 115 Ss~~d~e~~~eAL~aGA~DyL~KP 138 (554)
.+-.+.+.+.+++++||+.++.-.
T Consensus 192 gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 192 FGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECH
Confidence 344477888888999999998764
No 161
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=63.74 E-value=1e+02 Score=34.90 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=66.5
Q ss_pred CcEEEEEeCCHH----HHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEec--------------CCCC
Q 008761 32 KVRILLCDNDSN----SSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEV--------------DLPM 90 (554)
Q Consensus 32 kirVLIVDDd~~----~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi--------------~MP~ 90 (554)
..-|++||-..- +.+.++.+=... +..|+ -+.+.++|..++.. ..|.|.+-+ ..|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCCc
Confidence 466788875432 223333333333 34443 47789999988865 489987642 1234
Q ss_pred CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 91 mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
..-+..+.++.+. ..+|||.=..-.....+.+||.+||+.++.=
T Consensus 337 ~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 337 ATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred ccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 4456667776653 4689998888889999999999999998653
No 162
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=62.51 E-value=62 Score=30.97 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=50.4
Q ss_pred EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC-------cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHc
Q 008761 58 QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-------KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL 129 (554)
Q Consensus 58 eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~m-------DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~a 129 (554)
.|. ++.+.+++.+... . .+|.|++.--.|.. -|++.++++.+. .++||+.+.+-+ .+.+.++.+.
T Consensus 97 ~ig~S~h~~~e~~~a~~-~--g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~---~~~pv~AlGGI~-~~~i~~l~~~ 169 (180)
T PF02581_consen 97 IIGASCHSLEEAREAEE-L--GADYVFLGPVFPTSSKPGAPPLGLDGLREIARA---SPIPVYALGGIT-PENIPELREA 169 (180)
T ss_dssp EEEEEESSHHHHHHHHH-C--TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH---TSSCEEEESS---TTTHHHHHHT
T ss_pred EEEeecCcHHHHHHhhh-c--CCCEEEECCccCCCCCccccccCHHHHHHHHHh---CCCCEEEEcCCC-HHHHHHHHHc
Confidence 344 8899999766654 3 58999998865543 389999999876 568999998753 3456678899
Q ss_pred CCCEEE
Q 008761 130 GAADYL 135 (554)
Q Consensus 130 GA~DyL 135 (554)
||+.+-
T Consensus 170 Ga~gvA 175 (180)
T PF02581_consen 170 GADGVA 175 (180)
T ss_dssp T-SEEE
T ss_pred CCCEEE
Confidence 998874
No 163
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=62.32 E-value=21 Score=34.56 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=35.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILL 84 (554)
|||||....+...|.++|...|++|....+-...++.+... .||.||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEE
Confidence 89999999999999999999898877655332223334333 6897666
No 164
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=62.21 E-value=45 Score=32.90 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCCce-EEEEecCCCCC-cH--HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcC-CCEEEe
Q 008761 65 PRQVIDALNAEGSDID-LILAEVDLPMT-KG--LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLG-AADYLV 136 (554)
Q Consensus 65 g~EALe~L~~~~~~PD-LILLDi~MP~m-DG--lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aG-A~DyL~ 136 (554)
..+..+.+... .++ ++++|+.--++ .| +++++++.+. .++|||.-..-.+.+.+.++++.| |+.++.
T Consensus 148 ~~e~~~~~~~~--g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~---~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDA--GVKAIIYTDISRDGTLSGPNVEATRELAAA---VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhc--CCCEEEEeeecCcCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 45666666554 466 77887754332 34 7888888864 468999888888889999999998 888875
No 165
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.95 E-value=92 Score=34.74 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred CcEEEEEeCCHHHHHH----HHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec--CCCC-CcHHHHHHHHHhcc
Q 008761 32 KVRILLCDNDSNSSDA----VFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV--DLPM-TKGLKMLKYITRDK 104 (554)
Q Consensus 32 kirVLIVDDd~~~r~~----L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi--~MP~-mDGlElLr~Ir~~~ 104 (554)
..+|+|++-|. .|.. |.......|..+..+.+..++.+.+... .+|+||+|. .++. .+.++-+..+....
T Consensus 252 G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 252 GKSVSLYTTDN-YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred CCeEEEecccc-hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 45899998776 2333 3333334466566666677777777654 789999996 2221 22333333333211
Q ss_pred -C-CCCceEEEEecCCCHHHHHHHHH----cCCCEEEe
Q 008761 105 -E-LQRIPVIMMSAQDEVSVVVKCLR----LGAADYLV 136 (554)
Q Consensus 105 -~-~~~iPIIVLSs~~d~e~~~eAL~----aGA~DyL~ 136 (554)
. .+.-.++|+++......+.++++ .|.+.+|.
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 1 12345778887666544444433 45666643
No 166
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=61.82 E-value=77 Score=31.49 Aligned_cols=95 Identities=11% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHHhhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE-EEecCCCHHHHHH
Q 008761 48 VFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI-MMSAQDEVSVVVK 125 (554)
Q Consensus 48 L~~lL~~~g~-eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII-VLSs~~d~e~~~e 125 (554)
|-..|...+. -|....+.+++++.++..- .-.+=++.+.+-.-++++.++.|++.. + .+++ =...--+.+.+..
T Consensus 3 ~~~~l~~~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~--~-~~~~iGaGTV~~~~~~~~ 78 (206)
T PRK09140 3 LMQPFTKLPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKAL--G-DRALIGAGTVLSPEQVDR 78 (206)
T ss_pred hhhHHHhCCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHc--C-CCcEEeEEecCCHHHHHH
Confidence 3445566553 3556667777777665421 223446777777778899999998653 2 2322 1223456678889
Q ss_pred HHHcCCCEEEeCCCCHHHHHHH
Q 008761 126 CLRLGAADYLVKPLRTNELLNL 147 (554)
Q Consensus 126 AL~aGA~DyL~KP~~~eeL~~~ 147 (554)
|+++|| +|+.-|....++.+.
T Consensus 79 a~~aGA-~fivsp~~~~~v~~~ 99 (206)
T PRK09140 79 LADAGG-RLIVTPNTDPEVIRR 99 (206)
T ss_pred HHHcCC-CEEECCCCCHHHHHH
Confidence 999999 566557655555443
No 167
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=61.78 E-value=1.1e+02 Score=31.70 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=42.1
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE------EeCCCCHHHHHHHHHHHHHH
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY------LVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy------L~KP~~~eeL~~~L~~llr~ 154 (554)
++.+.+|++. ..+|||....-.+.+.+.+++..||+.+ +.+|.-..++...+.+++..
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 3667777654 4689999999899999999999998764 55675455555555555544
No 168
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=61.77 E-value=10 Score=37.24 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=37.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAE 85 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLD 85 (554)
|||||..-.+-..|.+.|.+.|++|.+....+..++.+... .||.||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEEC
Confidence 89999999999999999999998887666553344444444 68888874
No 169
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=60.94 E-value=41 Score=36.26 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=42.1
Q ss_pred CceEEEEecCCCCCc-HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 78 DIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 78 ~PDLILLDi~MP~mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
.+|+|++|+.-.-.. -++.+++|+... +. +.|+-..-...+.+..++++||+...+=
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~--p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAF--PE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhC--CC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 599999999765443 478899998753 33 4444444677888999999999998643
No 170
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=60.71 E-value=61 Score=31.00 Aligned_cols=78 Identities=13% Similarity=0.243 Sum_probs=53.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC--CCEEEEECC-------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC--SYQVTSVRS-------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~--g~eV~~A~d-------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
...+|.++...+.....+.+.|++. +.++....+ ..+.++.+... .||+|++-+.+|... .++.+++
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS--GADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHH
Confidence 4689999999999999988888765 456554221 23346777766 899999999999865 3455565
Q ss_pred hccCCCCceEEEEe
Q 008761 102 RDKELQRIPVIMMS 115 (554)
Q Consensus 102 ~~~~~~~iPIIVLS 115 (554)
.. .+.+|++-.
T Consensus 121 ~~---l~~~v~~~v 131 (171)
T cd06533 121 DR---LPVPVAIGV 131 (171)
T ss_pred HH---CCCCEEEEe
Confidence 53 244555443
No 171
>PLN02591 tryptophan synthase
Probab=60.65 E-value=27 Score=35.94 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=42.1
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQD------EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~~------d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~l 151 (554)
+.++++++++.. ..+|+|+||-.. -.....+|.++|+++.|.-.+..++....+..+
T Consensus 65 ~~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 65 SVISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 467888888743 578999998543 244678889999999999988887766554443
No 172
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=60.35 E-value=1.7e+02 Score=28.46 Aligned_cols=110 Identities=10% Similarity=0.157 Sum_probs=65.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
.++++|+.+... ...+...+...+. .|......++..+.+. ..|++++-... +.-|..+++.+. ..+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~ad~~i~ps~~-e~~~~~~~Ea~a-----~G~ 277 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYA----KASIFVLTSRF-EGFPMVLLEAMA-----FGL 277 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHH----hCCEEEeCccc-cccCHHHHHHHH-----cCC
Confidence 456777765443 3344444444442 3443333345555554 35887776544 223667777765 467
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|||+....... .+....|...++.++.+.+++...+..++...
T Consensus 278 Pvi~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 278 PVISFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLMEDE 320 (348)
T ss_pred CEEEecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHcCH
Confidence 88753322222 23445566889999999999999999887643
No 173
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.27 E-value=1.5e+02 Score=32.88 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=62.7
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCcH
Q 008761 32 KVRILLCDND----SNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTKG 93 (554)
Q Consensus 32 kirVLIVDDd----~~~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP-----------~mDG 93 (554)
...|++||-. ..+.+.++.+=... +..|+ -+.+.++|..++.. ..|.|.+.+.-. +...
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p~ 241 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQ 241 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCCh
Confidence 4678888752 23333333332233 23333 57789999988865 489887654211 0123
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
++++..+........+|||.=..-.....+.+||.+||+..+.=
T Consensus 242 ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 242 ITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 44443333322124689988888888999999999999998653
No 174
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=60.23 E-value=1.1e+02 Score=32.80 Aligned_cols=100 Identities=10% Similarity=0.189 Sum_probs=57.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh-C-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVK-C-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~-~-g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
++||.||.- .. .......+.. . +++++ +++ +.+.|-+..+.. ... +..|+ -+++ .. .
T Consensus 3 ~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~--gi~-~y~~~-------eell----~d---~ 63 (343)
T TIGR01761 3 VQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHRL--GVP-LYCEV-------EELP----DD---I 63 (343)
T ss_pred CcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh--CCC-ccCCH-------HHHh----cC---C
Confidence 689999997 44 4444444444 3 57766 455 444454444332 111 11121 1232 21 4
Q ss_pred CceEEEEec----CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 108 RIPVIMMSA----QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 108 ~iPIIVLSs----~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
++-+|.+.. ....+.+.+|+++|..=++.||+..++..+.++.
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~ 110 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRL 110 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHH
Confidence 555665522 2447889999999999999999986555444433
No 175
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=60.06 E-value=89 Score=29.88 Aligned_cols=69 Identities=13% Similarity=0.247 Sum_probs=50.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC--CCEEEEECC-------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC--SYQVTSVRS-------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~--g~eV~~A~d-------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
...+|.++..++...+.+...|... +..|+-+.+ .++.++.++.. .||+|++-+.+|... .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHH
Confidence 4579999999999999999988765 566664333 34566666655 899999999998755 4566666
Q ss_pred hc
Q 008761 102 RD 103 (554)
Q Consensus 102 ~~ 103 (554)
..
T Consensus 123 ~~ 124 (172)
T PF03808_consen 123 QR 124 (172)
T ss_pred HH
Confidence 54
No 176
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=59.78 E-value=34 Score=35.25 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=41.7
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQ------DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~------~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~l 151 (554)
+.++++++++.. ...+|+|+||-. .-.....+|.++|+++.|.-.+..++....+..+
T Consensus 75 ~~~~~~~~~r~~--~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREK--DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 357778888743 267899999843 3345688899999999999777777665554443
No 177
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=59.47 E-value=1.2e+02 Score=29.61 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=53.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQ--VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~e--V~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
-+|..||.++...+.+.+-++..++. +. ...|..+++..+......+|||++|--.....-.++++.|....-...-
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~ 152 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDT 152 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCC
Confidence 47999999999999998888776652 33 4556666665443221247999999755443344566666554333344
Q ss_pred eEEEEec
Q 008761 110 PVIMMSA 116 (554)
Q Consensus 110 PIIVLSs 116 (554)
-||++-.
T Consensus 153 ~iiv~E~ 159 (189)
T TIGR00095 153 VLIVVEE 159 (189)
T ss_pred eEEEEEe
Confidence 4555543
No 178
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.40 E-value=1e+02 Score=31.53 Aligned_cols=107 Identities=18% Similarity=0.248 Sum_probs=66.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
..+++|+.+.+. ...+...+...+. .|.......+..+.+. ..|++++=.. .+.-|+.+++.+. ..+
T Consensus 227 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~~d~~v~ps~-~E~~~~~~~EAma-----~g~ 295 (371)
T cd04962 227 PARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS----IADLFLLPSE-KESFGLAALEAMA-----CGV 295 (371)
T ss_pred CceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH----hcCEEEeCCC-cCCCccHHHHHHH-----cCC
Confidence 456777765543 3445555555543 3444444444444443 3587776543 3344677777765 467
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|||. |.... ..+.+..|..+|+.+|.+.+++...+..++.
T Consensus 296 PvI~-s~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 296 PVVA-SNAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred CEEE-eCCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 8875 33322 3456677888999999999999988888765
No 179
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=59.16 E-value=12 Score=36.11 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=36.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAE 85 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLD 85 (554)
|||||..-.+-..|.++|...|++|....+..--++.+... .||.||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iils 50 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVIS 50 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEc
Confidence 89999999999999999999998888666543223444443 68888874
No 180
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=59.07 E-value=1.1e+02 Score=30.28 Aligned_cols=101 Identities=18% Similarity=0.307 Sum_probs=56.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh--CC----C---------EEEEECCHHHHHHHHHh-cCCCceEEEEecC-CCCCcHHH
Q 008761 33 VRILLCDNDSNSSDAVFSLLVK--CS----Y---------QVTSVRSPRQVIDALNA-EGSDIDLILAEVD-LPMTKGLK 95 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~--~g----~---------eV~~A~dg~EALe~L~~-~~~~PDLILLDi~-MP~mDGlE 95 (554)
-+-.||..-+..++++.++|.- .| | .|..+.+.++|++.+.+ .+.+|-+|..|-. -|..=.++
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~ 122 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA 122 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH
Confidence 3678999999999999998862 22 1 26799999999999977 2458999999998 45555666
Q ss_pred HHHHHHhccCCCCceEEEE--ecCCCHHHHHHHHHcCCCEEEeCCCCH
Q 008761 96 MLKYITRDKELQRIPVIMM--SAQDEVSVVVKCLRLGAADYLVKPLRT 141 (554)
Q Consensus 96 lLr~Ir~~~~~~~iPIIVL--Ss~~d~e~~~eAL~aGA~DyL~KP~~~ 141 (554)
-++++... .+-|++++ |+..-.+ +.|+ ..||++.|+..
T Consensus 123 ~lr~~l~~---~~~P~LllFGTGwGL~~---ev~~--~~D~iLePI~g 162 (185)
T PF09936_consen 123 ELRRMLEE---EDRPVLLLFGTGWGLAP---EVME--QCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHH-----S-EEEEE--TT---H---HHHT--T-SEEB--TTT
T ss_pred HHHHHHhc---cCCeEEEEecCCCCCCH---HHHH--hcCeeEccccc
Confidence 66666532 33466665 4444333 3333 57899999853
No 181
>PLN02335 anthranilate synthase
Probab=58.97 E-value=17 Score=36.41 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCcHHHHHHHHHhccCCCCce
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD--LPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~--MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+|||||-...+...|.+.|...|+++.+.....-.++.+... .||.||+--. -|.-.| ..++.++... ..+|
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~--~~d~iVisgGPg~p~d~~-~~~~~~~~~~--~~~P 93 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRK--NPRGVLISPGPGTPQDSG-ISLQTVLELG--PLVP 93 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcc-chHHHHHHhC--CCCC
Confidence 5899999656677789999999998776554321112333333 5877776321 121112 2344444322 4578
Q ss_pred EEEEe
Q 008761 111 VIMMS 115 (554)
Q Consensus 111 IIVLS 115 (554)
|+=+.
T Consensus 94 iLGIC 98 (222)
T PLN02335 94 LFGVC 98 (222)
T ss_pred EEEec
Confidence 77544
No 182
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=58.82 E-value=1e+02 Score=33.89 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=65.6
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 32 KVRILLCDND---SNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 32 kirVLIVDDd---~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
.++++|+.+. +...+.+.+++...+. .|.... ..+..+.+. ..|++++-... ..-|+.+++.+.
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~~-Eg~p~~vlEAma----- 392 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSIS-EGQPLVILEAMA----- 392 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCchh-hcCChHHHHHHH-----
Confidence 4666777543 3445556666655553 343333 333344443 35887775432 334677777765
Q ss_pred CCceEEEEecCCCHHHHHHHHHc------CCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRL------GAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~a------GA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
..+|||. |..... .+.+.- |..+++..|.+.++|.+.+..++...
T Consensus 393 ~G~PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~ 443 (475)
T cd03813 393 AGIPVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLLKDP 443 (475)
T ss_pred cCCCEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCH
Confidence 4678875 443332 233333 77899999999999999998887643
No 183
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.65 E-value=1.6e+02 Score=30.69 Aligned_cols=94 Identities=11% Similarity=0.181 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhc-c-
Q 008761 34 RILLCDNDSNSSDAVFSLLV----KCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD-K- 104 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~----~~g~--eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~-~- 104 (554)
.|||=|.+-.+...+...+. ..++ .| +.+.+.+||++.+.. .+|+|.+|-. + .+.++++-.. .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~----~-~e~l~~~v~~~~~ 225 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNM----S-VEEIKEVVAYRNA 225 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCC----C-HHHHHHHHHHhhc
Confidence 35555554444333444443 3443 23 378899999999975 4899998843 2 2222322221 1
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..+. .+|..++.-+.+.+.+..+.|++-+.+
T Consensus 226 ~~~~-~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 226 NYPH-VLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred cCCC-eEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 1123 356677788999999999999987743
No 184
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=58.57 E-value=1.7e+02 Score=31.32 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=65.4
Q ss_pred cEEEEEeC----CHHHHHHHHHHHhhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCc--
Q 008761 33 VRILLCDN----DSNSSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTK-- 92 (554)
Q Consensus 33 irVLIVDD----d~~~r~~L~~lL~~~g-~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP-----------~mD-- 92 (554)
..++++|- +..+.+.++.+-+..+ ..|+ -+.+.+.|..++.. ..|.|.+-+.-. +..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~ 185 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGW 185 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCch
Confidence 46777775 3455555555544443 3333 35688888888765 478877553211 112
Q ss_pred HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 93 GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
+++.+..+... ..+|||.-.+-.....+.+||.+||+....=
T Consensus 186 ~l~ai~ev~~a---~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 186 QLAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHHh---cCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 45677777654 4689998888888889999999999998553
No 185
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=58.27 E-value=1.3e+02 Score=31.91 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=59.5
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC------------CCc
Q 008761 32 KVRILLCDN----DSNSSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP------------MTK 92 (554)
Q Consensus 32 kirVLIVDD----d~~~r~~L~~lL~~~g-~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP------------~mD 92 (554)
.+.+++||- .....+.++.+-+..+ ..|. .+.+.+.|..++.. ..|.|.+.+ -| +..
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGVP 181 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCCC
Confidence 467777763 2333333333333322 3443 46678888777754 489888632 11 112
Q ss_pred HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 93 GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
-+.++..+........+|||.-..-.+...+.+|+.+||+....
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 33444444433212358888666677888999999999998865
No 186
>PRK04302 triosephosphate isomerase; Provisional
Probab=57.82 E-value=2e+02 Score=28.50 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=51.0
Q ss_pred hhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC--CC---C-----CcH-HHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 53 VKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD--LP---M-----TKG-LKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 53 ~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~--MP---~-----mDG-lElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
...|+.++ ++.+.+++.. +... .+|+|-+.-. +. + ..+ .++++.|+... ..+|||.-.+-...
T Consensus 111 ~~~Gl~~I~~v~~~~~~~~-~~~~--~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~--~~~pvi~GggI~~~ 185 (223)
T PRK04302 111 KKLGLESVVCVNNPETSAA-AAAL--GPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN--PDVKVLCGAGISTG 185 (223)
T ss_pred HHCCCeEEEEcCCHHHHHH-HhcC--CCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc--CCCEEEEECCCCCH
Confidence 34687655 6666666554 3333 5787765321 10 1 112 34556666532 46899888888888
Q ss_pred HHHHHHHHcCCCEEEeCC
Q 008761 121 SVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~KP 138 (554)
+.+.+++..||+.++.-.
T Consensus 186 e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 186 EDVKAALELGADGVLLAS 203 (223)
T ss_pred HHHHHHHcCCCCEEEEeh
Confidence 889999999999997543
No 187
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=57.82 E-value=1e+02 Score=38.64 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=67.9
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCC-CCcH-HHHHHHHHh
Q 008761 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLP-MTKG-LKMLKYITR 102 (554)
Q Consensus 32 kirVLIV----DDd~~~r~~L~~lL~~~g~eV~~A~---dg~EALe~L~~~~~~PDLILLDi~MP-~mDG-lElLr~Ir~ 102 (554)
+.+|||. |-+..=...+.-+|+..||+|+-.. ..++.++.+.+. +||+|-|-..|. .+.. .++++.|++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~--~~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDH--NADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcccccHHHHHHHHHHHHh
Confidence 4577776 4444445555667788899998444 578888888877 899999987765 3444 457788877
Q ss_pred ccCCCCceEEEEecCCCHHHHHH---HHHcCCCEEEeCC
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVK---CLRLGAADYLVKP 138 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~e---AL~aGA~DyL~KP 138 (554)
.. ..+||++=.+-.+.+.+.. ....||+.|-.-.
T Consensus 810 ~g--~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA 846 (1178)
T TIGR02082 810 RG--ITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDA 846 (1178)
T ss_pred cC--CCceEEEeccccchhHHHhhhhhhccCCeEEecCH
Confidence 64 4678776665554444322 2334887776543
No 188
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=57.73 E-value=1.2e+02 Score=29.47 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCc-------HHHHHHHHHhccCCCCc-eEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 65 PRQVIDALNAEGSDIDLILAEVDLPMTK-------GLKMLKYITRDKELQRI-PVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILLDi~MP~mD-------GlElLr~Ir~~~~~~~i-PIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..+.++.+.. .+|.|+++..-|+.+ +++.+++++.......+ ++|++.+--..+.+.++++.|++.++.
T Consensus 121 ~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvv 197 (220)
T PRK05581 121 PLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVA 197 (220)
T ss_pred CHHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 3444444432 368777766545544 33445555432111112 455565656667888888899998865
Q ss_pred C
Q 008761 137 K 137 (554)
Q Consensus 137 K 137 (554)
-
T Consensus 198 g 198 (220)
T PRK05581 198 G 198 (220)
T ss_pred C
Confidence 4
No 189
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=57.34 E-value=1.1e+02 Score=31.11 Aligned_cols=70 Identities=16% Similarity=0.024 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCC
Q 008761 46 DAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
..+...+++.|.+|+. ..+....+..++.. +||+|++-.. ..++..+++.+++.. ...+++..+...
T Consensus 155 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~--~pd~v~~~~~--~~~~~~~~~~~~~~G--~~~~~~~~~~~~ 228 (312)
T cd06346 155 DAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAG--GPDALVVIGY--PETGSGILRSAYEQG--LFDKFLLTDGMK 228 (312)
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc--CCCEEEEecc--cchHHHHHHHHHHcC--CCCceEeecccc
Confidence 4456667777877652 23667777777765 8999987643 347888899888765 345666544433
Q ss_pred CHH
Q 008761 119 EVS 121 (554)
Q Consensus 119 d~e 121 (554)
+..
T Consensus 229 ~~~ 231 (312)
T cd06346 229 SDS 231 (312)
T ss_pred ChH
Confidence 333
No 190
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=57.03 E-value=47 Score=33.60 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=38.5
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQDE------VSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~~d------~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~ 149 (554)
.++++++.++.. ..+|+++|+-... ...+.++.++|++..+.-....+++...++
T Consensus 63 ~~~~~~~~vr~~---~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~ 123 (242)
T cd04724 63 DVLELVKEIRKK---NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFRE 123 (242)
T ss_pred HHHHHHHHHhhc---CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 467777777754 3678888876443 556778899999999997666665444333
No 191
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=56.68 E-value=38 Score=32.70 Aligned_cols=91 Identities=9% Similarity=0.104 Sum_probs=59.4
Q ss_pred HHHHHhhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCC-----CcHHHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 48 VFSLLVKCSYQVTS--VRSPRQVIDALNAEGSDIDLILAEVDLPM-----TKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 48 L~~lL~~~g~eV~~--A~dg~EALe~L~~~~~~PDLILLDi~MP~-----mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
+...|...|+.+.. +..+...++.+... .||.|-+|..+.. .....+++.|........++ |+++.-++.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRL--PVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK-VVAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhC--CCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCe-EEEEecCCH
Confidence 45556677988775 45677777788766 7999999975431 23345555555433223444 456777888
Q ss_pred HHHHHHHHcCCCE----EEeCCCCH
Q 008761 121 SVVVKCLRLGAAD----YLVKPLRT 141 (554)
Q Consensus 121 e~~~eAL~aGA~D----yL~KP~~~ 141 (554)
+....+..+|++- |+.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 8888899999843 46677653
No 192
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=56.43 E-value=1.2e+02 Score=29.81 Aligned_cols=85 Identities=8% Similarity=0.175 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCC---------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHH---HHHcC
Q 008761 63 RSPRQVIDALNAEGSDIDLILAEVDLPM---------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK---CLRLG 130 (554)
Q Consensus 63 ~dg~EALe~L~~~~~~PDLILLDi~MP~---------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~e---AL~aG 130 (554)
.+-...++.+... .+|.|++|++-.. .+-.+++..+.........++|=+-+. +.....+ ++..|
T Consensus 8 ~~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~-~~~~~~~Dl~~l~~g 84 (221)
T PF03328_consen 8 ANSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSL-DSPHIERDLEALDAG 84 (221)
T ss_dssp STSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SST-TCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCC-CcchhhhhhhhcccC
Confidence 3445566666554 7999999998755 455566666665321121233333333 3334445 99999
Q ss_pred CCEEEeCCC-CHHHHHHHHHH
Q 008761 131 AADYLVKPL-RTNELLNLWTH 150 (554)
Q Consensus 131 A~DyL~KP~-~~eeL~~~L~~ 150 (554)
++.++..=+ +.+++...+..
T Consensus 85 ~~gI~lP~ves~~~~~~~~~~ 105 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVAA 105 (221)
T ss_dssp SSEEEETT--SHHHHHHHHHH
T ss_pred CCeeeccccCcHHHHHHHHHH
Confidence 999865434 45565554443
No 193
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=56.05 E-value=1.2e+02 Score=27.80 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=40.0
Q ss_pred CceEEEEecCCCCCcH-------HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 78 DIDLILAEVDLPMTKG-------LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 78 ~PDLILLDi~MP~mDG-------lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..|.|.++...+...+ ...+..++.. ..+||++..+-...+.+.++++.||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG---SKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 5799988877765432 2344444432 578999888877778889999999988753
No 194
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=55.80 E-value=1.7e+02 Score=30.35 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=31.9
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
++++.+|++. ..+|||.+..-.+.+.+.+++.+||+.+
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 223 LRMVYQVYQA---VDIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 6778888764 4789999999999999999999998654
No 195
>PRK12704 phosphodiesterase; Provisional
Probab=55.39 E-value=13 Score=42.02 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=38.9
Q ss_pred eEEEEecCCCHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVS--VVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e--~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.+|+||+.+... .+..+|+.|+.|+..||+..+++...++.-+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 578899987765 899999999999999999999999888776653
No 196
>PRK14098 glycogen synthase; Provisional
Probab=55.24 E-value=1.3e+02 Score=33.52 Aligned_cols=111 Identities=8% Similarity=0.114 Sum_probs=61.9
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 32 KVRILLCDNDS-NSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 32 kirVLIVDDd~-~~r~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.++++|+.+-+ .....|.++....+-.|. ..-+..++.+.+. ..|++++=-. ...-|+..++.++ ..
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a----~aDi~l~PS~-~E~~Gl~~lEAma-----~G 405 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA----GLDMLLMPGK-IESCGMLQMFAMS-----YG 405 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH----hCCEEEeCCC-CCCchHHHHHHHh-----CC
Confidence 46777777643 244566666555442332 2234444445544 2587775322 2445777777765 34
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
+|+|+...-.-.+.+......|..+|+..|.+.+.|...|.+++
T Consensus 406 ~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 406 TIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred CCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 55554332222222222222367889999999999998888765
No 197
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=55.01 E-value=45 Score=32.09 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=47.1
Q ss_pred HHHHhhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCCCc-------HHHHHHHHHhccC--CCCceEEEEec
Q 008761 49 FSLLVKCSYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPMTK-------GLKMLKYITRDKE--LQRIPVIMMSA 116 (554)
Q Consensus 49 ~~lL~~~g~eV~~---A~dg~EALe~L~~~~~~PDLILLDi~MP~mD-------GlElLr~Ir~~~~--~~~iPIIVLSs 116 (554)
.+.+...|..+.. ..+..+.++.+.. .+|.|+++-.-|+.. +++.++++++... ..++||++..+
T Consensus 97 ~~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG 173 (210)
T TIGR01163 97 LQLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGG 173 (210)
T ss_pred HHHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 3444455544332 3345566655543 368777765444433 3345555543211 12357655554
Q ss_pred CCCHHHHHHHHHcCCCEEEeC
Q 008761 117 QDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 117 ~~d~e~~~eAL~aGA~DyL~K 137 (554)
- ..+.+.++++.||+.++.-
T Consensus 174 I-~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 174 V-NDDNARELAEAGADILVAG 193 (210)
T ss_pred c-CHHHHHHHHHcCCCEEEEC
Confidence 4 4678888899999988654
No 198
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.99 E-value=46 Score=34.15 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=41.0
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQDE------VSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~~d------~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
+.+++++.|++.. ..+|+++|+-... .....++.++|++.+|......++....+..
T Consensus 73 ~~~~~v~~ir~~~--~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~ 135 (256)
T TIGR00262 73 KCFELLKKVRQKH--PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEA 135 (256)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHH
Confidence 4577788887532 4689888876544 5678889999999999988777765554443
No 199
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=54.50 E-value=40 Score=34.91 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=41.3
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQ------DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~------~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
+.++++++++.. ..+|+|+||-. .-.....+|.++|++.+|...+..++....+..
T Consensus 78 ~~~~~~~~~r~~---~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~ 139 (263)
T CHL00200 78 KILSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISV 139 (263)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH
Confidence 467888888743 67899988854 334568889999999999988877765544433
No 200
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=54.05 E-value=1.1e+02 Score=32.19 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=58.7
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCCCE--E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 34 RILLCDNDSNSSDAVFSLLV----KCSYQ--V-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~----~~g~e--V-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
-|||=|.+-...-.+.+.++ ..+|. | +.+.+.+++.+.+.. .+|+|+||-.-|. .--++++.+. .
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~e-~~~~av~~l~-~--- 231 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSPE-ELKEAVKLLG-L--- 231 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCHH-HHHHHHHHhc-c---
Confidence 36666666555544555554 33552 3 378899999999976 4999999954442 1222333321 1
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
..-.++=.|+.-..+.+.+....|++-+
T Consensus 232 ~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 232 AGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred CCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 3335666778888888877778887655
No 201
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=53.98 E-value=1.8e+02 Score=30.43 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=49.1
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 59 V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.+.+.+.++|.+.+.. .+|+|++| .|+.-+-.++++.|+.. ..-.+|-.|+.-+.+.+.+-...|++-+.
T Consensus 192 eVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~---~~~~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 192 TVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFF---DHIPTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred EEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhcc---CCCEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3477899999999865 49999999 34444444555555432 22346777888888888888888877654
No 202
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=53.95 E-value=59 Score=35.91 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=41.8
Q ss_pred CceEEEEecCCCC-CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 78 DIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 78 ~PDLILLDi~MP~-mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..|+|++|..-+. ..-++++++|+.. +++++|| +..-...+.+..++++||+....
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~--~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTK--YPNLDLI-AGNIVTKEAALDLISVGADCLKV 221 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhh--CCCCcEE-EEecCCHHHHHHHHHcCCCEEEE
Confidence 6999999998764 4566889999864 3566643 44555677888999999988753
No 203
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=53.73 E-value=2.2e+02 Score=30.06 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=52.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHH
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNE 143 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~ee 143 (554)
+.++..+.+.. .|+.++- ..+..-|+.+++.+. ..+|||. |.... ..+.+..|..+++..|.+.++
T Consensus 290 ~~~~~~~~l~~----adv~v~~-s~~e~~~~~llEAmA-----~G~PVIa-s~~~g---~~e~i~~~~~G~lv~~~d~~~ 355 (396)
T cd03818 290 PYDQYLALLQV----SDVHVYL-TYPFVLSWSLLEAMA-----CGCLVVG-SDTAP---VREVITDGENGLLVDFFDPDA 355 (396)
T ss_pred CHHHHHHHHHh----CcEEEEc-CcccccchHHHHHHH-----CCCCEEE-cCCCC---chhhcccCCceEEcCCCCHHH
Confidence 34566666653 4766652 345555667777764 5678875 33332 335566788999999999999
Q ss_pred HHHHHHHHHHHH
Q 008761 144 LLNLWTHMWRRR 155 (554)
Q Consensus 144 L~~~L~~llr~~ 155 (554)
|.+.|..++...
T Consensus 356 la~~i~~ll~~~ 367 (396)
T cd03818 356 LAAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHHhCH
Confidence 999998887643
No 204
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=53.69 E-value=2.5e+02 Score=29.04 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=38.4
Q ss_pred ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC----CCHHHHHHHH-HcCCCEEEeCCCC--HHHHHHHHHHH
Q 008761 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ----DEVSVVVKCL-RLGAADYLVKPLR--TNELLNLWTHM 151 (554)
Q Consensus 79 PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~----~d~e~~~eAL-~aGA~DyL~KP~~--~eeL~~~L~~l 151 (554)
.|++++.- + +..+++.+. ..+|+|++... .+.....+.+ +.|+ .++..+-+ .+.|.+.+..+
T Consensus 253 ~d~~i~~~---g--~~~~~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~-g~~~~~~~~~~~~l~~~i~~l 321 (357)
T PRK00726 253 ADLVICRA---G--ASTVAELAA-----AGLPAILVPLPHAADDHQTANARALVDAGA-ALLIPQSDLTPEKLAEKLLEL 321 (357)
T ss_pred CCEEEECC---C--HHHHHHHHH-----hCCCEEEecCCCCCcCcHHHHHHHHHHCCC-EEEEEcccCCHHHHHHHHHHH
Confidence 57777521 1 345555544 46799887531 2222223333 4454 67776655 89999999988
Q ss_pred HHHH
Q 008761 152 WRRR 155 (554)
Q Consensus 152 lr~~ 155 (554)
+...
T Consensus 322 l~~~ 325 (357)
T PRK00726 322 LSDP 325 (357)
T ss_pred HcCH
Confidence 7643
No 205
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=53.65 E-value=2.8e+02 Score=28.87 Aligned_cols=110 Identities=12% Similarity=0.164 Sum_probs=64.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
.++++||.+-+. ++.+.++....+. .|... .+..+.+..+-. ..|++++--.. ..-|+.+++.+.
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~---~~d~~v~~s~~-Egf~~~~lEAma----- 279 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK---NVSALLLTSKF-EGFPMTLLEAMS----- 279 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh---cCcEEEECCcc-cCcChHHHHHHH-----
Confidence 456777766543 4455555554442 24332 233333332211 24666653221 223677777765
Q ss_pred CCceEEEEec-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSA-QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 107 ~~iPIIVLSs-~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
..+|||. |. ... ..+.+..|..+++..|.+.++|.+.|..++...
T Consensus 280 ~G~Pvv~-s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 280 YGIPCIS-SDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred cCCCEEE-eCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 5678874 33 333 234566788999999999999999998887654
No 206
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=53.58 E-value=1.4e+02 Score=37.60 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=67.9
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CcH-HHHHHHHHh
Q 008761 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPM-TKG-LKMLKYITR 102 (554)
Q Consensus 32 kirVLIV----DDd~~~r~~L~~lL~~~g~eV~~A~---dg~EALe~L~~~~~~PDLILLDi~MP~-mDG-lElLr~Ir~ 102 (554)
+.+|||. |-+..=...+.-+|+..||+|+-.. ..++.++.+.++ +||+|.|-..|.. +.. .++++.|++
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~--~~diVgLS~L~t~s~~~m~~~i~~L~~ 828 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEE--NADIIGLSGLITPSLDEMVHVAKEMER 828 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcchhhHHHHHHHHHHHHh
Confidence 5577777 5555555666667788899998443 578888888877 8999999877753 443 467788877
Q ss_pred ccCCCCceEEEEecCCCHHHH-HH--HHHcCCCEEEeCC
Q 008761 103 DKELQRIPVIMMSAQDEVSVV-VK--CLRLGAADYLVKP 138 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~-~e--AL~aGA~DyL~KP 138 (554)
.. ..+||++-.+..+...+ .+ .--.||+-|..-.
T Consensus 829 ~g--~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 829 QG--FTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred cC--CCCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 64 57887766654443321 11 1122887776543
No 207
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=53.25 E-value=2.4e+02 Score=29.59 Aligned_cols=106 Identities=12% Similarity=0.173 Sum_probs=56.7
Q ss_pred CcEEEEE-eCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLC-DNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIV-DDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.++++++ .++...++.|..+....+-.|....-..+..+++. ..|++++. + -|+.+++.+. ..+|
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~----~aD~~v~~---~--gg~t~~EA~a-----~g~P 295 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFR----VTSCMITK---P--GGITLSEAAA-----LGVP 295 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHH----hccEEEeC---C--CchHHHHHHH-----hCCC
Confidence 4566555 55555666676666544423443333333344443 25777753 2 2666666654 4678
Q ss_pred EEEEecCC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQD--EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 111 IIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+|+..... ..+.+....+.|+. ..+.+.++|...+..++..
T Consensus 296 vI~~~~~~g~~~~n~~~~~~~G~~---~~~~~~~~l~~~i~~ll~~ 338 (380)
T PRK13609 296 VILYKPVPGQEKENAMYFERKGAA---VVIRDDEEVFAKTEALLQD 338 (380)
T ss_pred EEECCCCCCcchHHHHHHHhCCcE---EEECCHHHHHHHHHHHHCC
Confidence 77654222 12222233455653 2345778888888887653
No 208
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=53.19 E-value=2.7e+02 Score=28.48 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=37.7
Q ss_pred ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC----CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 008761 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ----DEVSVVVKCLRLGAADYLVKPL--RTNELLNLWTHMW 152 (554)
Q Consensus 79 PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~----~d~e~~~eAL~aGA~DyL~KP~--~~eeL~~~L~~ll 152 (554)
.|++++.- + +..+++.+. ..+|||++... .......+.+..+-..++..+- +.++|.+.+..++
T Consensus 253 ad~~v~~s---g--~~t~~Eam~-----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA-----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH-----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 56666521 1 445555554 56798876422 1112222333333456777664 7899999888877
Q ss_pred HH
Q 008761 153 RR 154 (554)
Q Consensus 153 r~ 154 (554)
..
T Consensus 323 ~~ 324 (350)
T cd03785 323 SD 324 (350)
T ss_pred cC
Confidence 54
No 209
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=53.17 E-value=3e+02 Score=30.22 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=58.3
Q ss_pred HHHHHhhCCCEEEE----ECCHHHHHHHHHhcCCCceEEEEecCC----CCCcHHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 48 VFSLLVKCSYQVTS----VRSPRQVIDALNAEGSDIDLILAEVDL----PMTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 48 L~~lL~~~g~eV~~----A~dg~EALe~L~~~~~~PDLILLDi~M----P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
+.+...+.|..+.. ..+..+.+..+.+. ..|.|.+.... ....+++.+++++.. .++||++..+- .
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~---~~iPI~a~GGI-~ 172 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEE---VSIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhh---CCCcEEEECCC-C
Confidence 44444556765443 23433333333333 57888765321 224677888888864 45898877655 5
Q ss_pred HHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHH
Q 008761 120 VSVVVKCLRLGAADYL-----VKPLRTNELLNLWTHMW 152 (554)
Q Consensus 120 ~e~~~eAL~aGA~DyL-----~KP~~~eeL~~~L~~ll 152 (554)
.+.+.+++.+||+.++ .+.-+..+....+++.+
T Consensus 173 ~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i 210 (430)
T PRK07028 173 AETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAI 210 (430)
T ss_pred HHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHH
Confidence 6778899999999774 34434444444444433
No 210
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=53.14 E-value=98 Score=35.63 Aligned_cols=97 Identities=15% Similarity=0.268 Sum_probs=52.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+.+++||.|+...+.+ ++.|+.+...+ +-.+.++.+.-. +.|++++-+.-+ .+-+.++..+++.. ++++
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi~--~A~~vv~~~~d~-~~n~~i~~~~r~~~--p~~~ 493 (601)
T PRK03659 423 KMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGAE--KAEAIVITCNEP-EDTMKIVELCQQHF--PHLH 493 (601)
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCCc--cCCEEEEEeCCH-HHHHHHHHHHHHHC--CCCe
Confidence 34556666555543322 22344444322 223344443333 456666544322 23455666677643 6777
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCC
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPL 139 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~ 139 (554)
||+-+. +.+...+..++||+..+.--+
T Consensus 494 IiaRa~--~~~~~~~L~~~Ga~~vv~e~~ 520 (601)
T PRK03659 494 ILARAR--GRVEAHELLQAGVTQFSRETF 520 (601)
T ss_pred EEEEeC--CHHHHHHHHhCCCCEEEccHH
Confidence 765544 445677888999998876543
No 211
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=53.03 E-value=1.8e+02 Score=32.40 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=62.0
Q ss_pred CcEEEEEeC---CH-HHHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCcH
Q 008761 32 KVRILLCDN---DS-NSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTKG 93 (554)
Q Consensus 32 kirVLIVDD---d~-~~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP-----------~mDG 93 (554)
.+.++.||- +. ...+.++.+-... ...|+ .+.+.++|..++.. ..|.|.+-+.-. +...
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g~G~~~~t~~~~~~g~p~ 312 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIGPGSICTTRIVAGVGVPQ 312 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCCccceecCCCccH
Confidence 467888886 32 2333333333332 23333 57788888888865 478875442100 1123
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
++++..+........+|||.=.+-.....+.+||.+||+..+.=
T Consensus 313 ~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 313 ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 44544443322225689887777888889999999999998764
No 212
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=53.01 E-value=84 Score=31.59 Aligned_cols=67 Identities=25% Similarity=0.368 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCC-c--HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 65 PRQVIDALNAEGSDIDLILAEVDLPMT-K--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILLDi~MP~m-D--GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..+.++.+... -=.++++|+..-++ . -+++++.|.+. ..+||++-.+-.+.+.+.+++.+||+..+.
T Consensus 148 ~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 56666666544 23689999976543 2 26778888764 578999888888999999999999999875
No 213
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=52.60 E-value=1.5e+02 Score=30.71 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=47.7
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 60 ~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+.+.+.+++.+.+.. .+|.|.+|-.-|. +--++++.++.. .+++|++++. --+.+.+.+..+.||+.+..
T Consensus 188 Vev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~--~~~i~i~AsG-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 188 VEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSL--APPVLLAAAG-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhcc--CCCceEEEEC-CCCHHHHHHHHHcCCcEEEE
Confidence 478899999988754 5899999965553 112344445432 1457766554 45778888999999988743
No 214
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=52.30 E-value=48 Score=31.05 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=43.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC----CHHHHHHHHHhcCCCceEEEEecCCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR----SPRQVIDALNAEGSDIDLILAEVDLPM 90 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~----dg~EALe~L~~~~~~PDLILLDi~MP~ 90 (554)
...-+|+|+..+....+-|..+|.+.|..|..+. +.+++ ++ .-|+|++-..-+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hh----hCCEEEEecCCCC
Confidence 3567999999999999999999999999999887 44443 32 3699999887764
No 215
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=52.13 E-value=1.7e+02 Score=29.89 Aligned_cols=67 Identities=7% Similarity=0.087 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 44 SSDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
....+...++..|++|.. ..+-...+..++.. .+|+|++... ..+...+++.+++.. ...+++..+.
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~--~~d~i~~~~~--~~~~~~~~~~~~~~g--~~~~~~~~~~ 230 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA--GPDAVVVAGH--FPDAVLLVRQMKELG--YNPKALYMTV 230 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc--CCCEEEECCc--chhHHHHHHHHHHcC--CCCCEEEEec
Confidence 345556667777887652 13455566666655 7999997543 446778888888764 3456665544
No 216
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.04 E-value=2.9e+02 Score=29.11 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=57.5
Q ss_pred EEEEEeCCHHHH--H--HHHHHHh----hCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 34 RILLCDNDSNSS--D--AVFSLLV----KCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 34 rVLIVDDd~~~r--~--~L~~lL~----~~g~--eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
.|||=|.+-.+. - .+...+. ..++ .| +.+.+.+++.+.+.. .+|+|+||-.-|. +--++++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~e-~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSLD-DLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCHH-HHHHHHHHhC-
Confidence 477777665542 1 2444443 3443 33 488999999999865 5899999943322 2223333332
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
...+|-.|+.-+.+.+.+-...|++-.
T Consensus 236 -----~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 -----GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred -----CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 223677888888888888888887654
No 217
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.95 E-value=58 Score=30.56 Aligned_cols=83 Identities=7% Similarity=0.143 Sum_probs=46.2
Q ss_pred CcEEEEEeCCHHHHH-----------HHHHHHhhC---CCEEE-EECC---HHHHHHHHHh-cCCCceEEEEecCCCCC-
Q 008761 32 KVRILLCDNDSNSSD-----------AVFSLLVKC---SYQVT-SVRS---PRQVIDALNA-EGSDIDLILAEVDLPMT- 91 (554)
Q Consensus 32 kirVLIVDDd~~~r~-----------~L~~lL~~~---g~eV~-~A~d---g~EALe~L~~-~~~~PDLILLDi~MP~m- 91 (554)
+++||++.|+-.... .|.+.|.+. ++++. ...+ ..+.++.+.. ...+||+|++-+-.-++
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~ 81 (191)
T cd01836 2 PLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPLPETRFDVAVISIGVNDVT 81 (191)
T ss_pred CeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhcccCCCCEEEEEecccCcC
Confidence 467777777765442 355555542 34544 3333 3445555542 12489999994433221
Q ss_pred ----------cHHHHHHHHHhccCCCCceEEEEec
Q 008761 92 ----------KGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 92 ----------DGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
+=.++++.|++.. +.++||+++-
T Consensus 82 ~~~~~~~~~~~l~~li~~i~~~~--~~~~iiv~~~ 114 (191)
T cd01836 82 HLTSIARWRKQLAELVDALRAKF--PGARVVVTAV 114 (191)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhC--CCCEEEEECC
Confidence 1234666666532 6788888874
No 218
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=51.53 E-value=87 Score=31.89 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCC--cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 67 QVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 67 EALe~L~~~~~~PDLILLDi~MP~m--DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+.+... ..|.|.+|...++. -.++++++|++.. ..+|||-.-+-.+.+.+.+.++.||+....
T Consensus 152 ~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~--~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 152 IDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEF--NDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred HHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhc--CCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 333444444 68999999877764 2488899998752 358999888888899999999999998754
No 219
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.24 E-value=1.6e+02 Score=32.45 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=50.3
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC--CCC-CcHHHHHHHHHhccC
Q 008761 32 KVRILLCDNDSNS---SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD--LPM-TKGLKMLKYITRDKE 105 (554)
Q Consensus 32 kirVLIVDDd~~~---r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~--MP~-mDGlElLr~Ir~~~~ 105 (554)
..+|++|+-|+.- ...|...-...++.+..+.+..+....+.... .+|+||+|.- .+. ...++.+..+.....
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 4689999988742 22333333345666666667776666665542 6899999963 221 223344444433111
Q ss_pred CCCceEEEEecCCCHHHHH
Q 008761 106 LQRIPVIMMSAQDEVSVVV 124 (554)
Q Consensus 106 ~~~iPIIVLSs~~d~e~~~ 124 (554)
.+.-.++|+++......+.
T Consensus 330 ~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 330 EPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred CCCeEEEEEECCCCHHHHH
Confidence 1223366777765544333
No 220
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=51.18 E-value=1.9e+02 Score=26.19 Aligned_cols=112 Identities=13% Similarity=0.220 Sum_probs=70.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
..+.++|+.+.... ..+.......+. .+.... ...+..+++.. .|++++=... +.-|..+++.+.
T Consensus 46 ~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~----- 114 (172)
T PF00534_consen 46 PNYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA----- 114 (172)
T ss_dssp TTEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH-----
T ss_pred CCeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc-----
Confidence 45788888844433 335555554443 344333 34466666654 5887775555 445667777776
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
..+|||+ +... ...+.+..+..+++..+.+.+++...|..++.....
T Consensus 115 ~g~pvI~-~~~~---~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~ 161 (172)
T PF00534_consen 115 CGCPVIA-SDIG---GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPEL 161 (172)
T ss_dssp TT-EEEE-ESST---HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHH
T ss_pred cccceee-cccc---CCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHH
Confidence 4567763 3322 345677788899999999999999999998876543
No 221
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=51.13 E-value=1.7e+02 Score=28.79 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=53.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEec-CCCC-CcHHHHHHHHHhccC
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEV-DLPM-TKGLKMLKYITRDKE 105 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~-------dg~EALe~L~~~~~~PDLILLDi-~MP~-mDGlElLr~Ir~~~~ 105 (554)
|||-|-|...++.+...-.+.|-++++.+ +|++.++++++....|=+|+.|- -..+ ..|-++++.+...
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h-- 80 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANH-- 80 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcC--
Confidence 56777788888888877778888888544 58999999987644666776654 3333 4688899998765
Q ss_pred CCCceEE
Q 008761 106 LQRIPVI 112 (554)
Q Consensus 106 ~~~iPII 112 (554)
+.+-|+
T Consensus 81 -~~IeVL 86 (180)
T PF14097_consen 81 -PDIEVL 86 (180)
T ss_pred -CCceEE
Confidence 555554
No 222
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=51.03 E-value=77 Score=30.51 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=59.0
Q ss_pred HHHHHHhhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCC-----CcHHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 47 AVFSLLVKCSYQVTS--VRSPRQVIDALNAEGSDIDLILAEVDLPM-----TKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 47 ~L~~lL~~~g~eV~~--A~dg~EALe~L~~~~~~PDLILLDi~MP~-----mDGlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
.....|...|+.+.. +..+..-+..+... .||.|-+|..+-. .....+++.|........+. |+.++-++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCC
Confidence 345566778887664 55667777777766 7999999975431 11334555554433223444 44667778
Q ss_pred HHHHHHHHHcCCCE----EEeCCCCH
Q 008761 120 VSVVVKCLRLGAAD----YLVKPLRT 141 (554)
Q Consensus 120 ~e~~~eAL~aGA~D----yL~KP~~~ 141 (554)
.+....+..+|++- |+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 88888888999853 46777654
No 223
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=50.89 E-value=50 Score=31.67 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=36.7
Q ss_pred CceEEEEecCCCCCcH-------HHHHHHHHhccC--CCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 78 DIDLILAEVDLPMTKG-------LKMLKYITRDKE--LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 78 ~PDLILLDi~MP~mDG-------lElLr~Ir~~~~--~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
.+|.|+++...|+.+| ++.++++++... ...+||++.-+- ..+.+.++++.||+.++.-
T Consensus 127 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI-~~env~~~~~~gad~iivg 194 (211)
T cd00429 127 EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGI-NLETIPLLAEAGADVLVAG 194 (211)
T ss_pred hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence 3688877765555433 445555544310 124687665544 4578889999999988653
No 224
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=50.80 E-value=19 Score=34.85 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=36.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi 86 (554)
|||||..-.+-..|.++|...|.++.+..+-+..++.+... .||.||+--
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~ 51 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISP 51 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcC
Confidence 89999999999999999999898877665543223444433 688888743
No 225
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.93 E-value=90 Score=29.09 Aligned_cols=38 Identities=5% Similarity=0.119 Sum_probs=23.9
Q ss_pred CceEEEEecCCCCCc------------HH-HHHHHHHhccCCCCceEEEEecC
Q 008761 78 DIDLILAEVDLPMTK------------GL-KMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 78 ~PDLILLDi~MP~mD------------Gl-ElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
+||+|++-+-..+.. .+ .+++.|++.. +...||++|..
T Consensus 67 ~pd~Vii~~G~ND~~~~~~~~~~~~~~~l~~li~~i~~~~--~~~~iil~t~~ 117 (188)
T cd01827 67 NPNIVIIKLGTNDAKPQNWKYKDDFKKDYETMIDSFQALP--SKPKIYICYPI 117 (188)
T ss_pred CCCEEEEEcccCCCCCCCCccHHHHHHHHHHHHHHHHHHC--CCCeEEEEeCC
Confidence 799999988665432 11 3566666543 55677777754
No 226
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=49.66 E-value=2.9e+02 Score=27.83 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=63.4
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 32 KVRILLCDNDSN---SSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 32 kirVLIVDDd~~---~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
.++++|+.+... ..+.+...+...+. .|.......+..+.+. ..|++++=-.-+..-|..+++.+.
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~----~ad~~i~ps~~~e~~~~~l~EA~a----- 286 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA----LADIVVSASTEPEAFGRTAVEAQA----- 286 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH----hCCEEEecCCCCCCCchHHHHHHh-----
Confidence 466777765432 33334444444443 3444444444555554 257776643234455677777765
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
..+|||+ +.... ..+.+..|..+++..+.+.++|...|..++
T Consensus 287 ~G~PvI~-~~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 287 MGRPVIA-SDHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred cCCCEEE-cCCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4678874 33332 244566677899999999999998886444
No 227
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=49.29 E-value=2.6e+02 Score=27.21 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=62.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC--CEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCS--YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g--~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
.++++|+.+.. ....+...+...+ -.|. -.-+.++..+.+.. .|++++-... +.-|..+++.+. .
T Consensus 230 ~~~l~i~G~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~-----~ 298 (374)
T cd03801 230 DVRLVIVGDGP-LREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA-----A 298 (374)
T ss_pred CeEEEEEeCcH-HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchh-ccccchHHHHHH-----c
Confidence 46666666433 3444444443322 1222 22334666666643 4777764433 334566777665 4
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
.+|||+... .. ..+.+..+-..++..+.+.+++.+.+..++...
T Consensus 299 g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 299 GLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred CCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHHHHHHcCh
Confidence 568765433 22 233445577889999999999999888876543
No 228
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=49.11 E-value=71 Score=30.91 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=47.6
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 60 ~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
+.+.+.+++.+.+.. .+|+|.||-.-| -+--++++.|+... .-..|.+|+.-+.+.+.+..+.|++-+-
T Consensus 85 VEv~~~ee~~ea~~~---g~d~I~lD~~~~-~~~~~~v~~l~~~~---~~v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 85 VEVENLEEAEEALEA---GADIIMLDNMSP-EDLKEAVEELRELN---PRVKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEESSHHHHHHHHHT---T-SEEEEES-CH-HHHHHHHHHHHHHT---TTSEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEcCCHHHHHHHHHh---CCCEEEecCcCH-HHHHHHHHHHhhcC---CcEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 378899999999875 499999996644 23344555555543 2267778888787888888899976653
No 229
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=48.96 E-value=3.4e+02 Score=29.30 Aligned_cols=108 Identities=13% Similarity=0.162 Sum_probs=68.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCC---CCcH--HHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLP---MTKG--LKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP---~mDG--lElLr~Ir~ 102 (554)
.++++||.+-+. +..|..++...|. .|.... +.++..+.+.. .|+.++=.... +.+| +.+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 467778877653 4567777766654 233322 44566666653 58777643221 1233 45666654
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
..+|||. |.... ..+.+..|..+++..|-+.++|.+.|..++.
T Consensus 327 ----~G~PVI~-t~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 ----VGIPVVS-TLHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred ----CCCCEEE-eCCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 5678875 33332 3456777899999999999999999988876
No 230
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=48.87 E-value=59 Score=32.84 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=45.0
Q ss_pred cEEEEEeCCH------HHHHHHHHHHhhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 33 VRILLCDNDS------NSSDAVFSLLVKCSYQVTSV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 33 irVLIVDDd~------~~r~~L~~lL~~~g~eV~~A-~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
++||++-... .....+...|.+.|++|... .+.......+... +||||.+-......-.+..+..+.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~---- 74 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL---- 74 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH----
Confidence 3677776553 35666778888889887633 3444444555544 899998865444444444444442
Q ss_pred CCCceEEEE
Q 008761 106 LQRIPVIMM 114 (554)
Q Consensus 106 ~~~iPIIVL 114 (554)
..+|+|+.
T Consensus 75 -~~~~~v~~ 82 (365)
T cd03825 75 -DRKPVVWT 82 (365)
T ss_pred -cCCCEEEE
Confidence 24676654
No 231
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.80 E-value=1.1e+02 Score=30.86 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCC-cH--HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPMT-KG--LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~m-DG--lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+.++.+.... --.+|++|+..-++ .| +++++.+.+. ..+|||+-..-.+.+.+.+++++|++..+.
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 55566655441 13799999977654 33 6788888764 578999888888889999999999999876
No 232
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.71 E-value=2.7e+02 Score=27.94 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=59.9
Q ss_pred HHHHHhhCCC-EEEEECCHHHHHHHHHhcC-CCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHH
Q 008761 48 VFSLLVKCSY-QVTSVRSPRQVIDALNAEG-SDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (554)
Q Consensus 48 L~~lL~~~g~-eV~~A~dg~EALe~L~~~~-~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~e 125 (554)
+...|.+.+. -|....+.++|++.++... ...+ ++.+.|-.-++++.++.|++.. +++ +|-.-.-.+.+.+..
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~--p~~-~IGAGTVl~~~~a~~ 82 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEV--PEA-LIGAGTVLNPEQLAQ 82 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHC--CCC-EEEEeeccCHHHHHH
Confidence 4455666664 4667788999888887631 1355 4455555558999999998753 432 233333456688999
Q ss_pred HHHcCCCEEEeCCCCHHHHHHH
Q 008761 126 CLRLGAADYLVKPLRTNELLNL 147 (554)
Q Consensus 126 AL~aGA~DyL~KP~~~eeL~~~ 147 (554)
|+++||+ |++-|.-..++.+.
T Consensus 83 a~~aGA~-FivsP~~~~~vi~~ 103 (212)
T PRK05718 83 AIEAGAQ-FIVSPGLTPPLLKA 103 (212)
T ss_pred HHHcCCC-EEECCCCCHHHHHH
Confidence 9999987 44445544455544
No 233
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=48.61 E-value=84 Score=33.07 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=47.5
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 59 V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.+.+.+.++|.+.+.. .+|+|++|- |..-+--++++.+++. .+-.+|-.|+.-+.+.+.+-...|++-+.
T Consensus 193 eVEv~tleqa~ea~~a---gaDiI~LDn-~~~e~l~~av~~~~~~---~~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 193 VVEADTPKEAIAALRA---QPDVLQLDK-FSPQQATEIAQIAPSL---APHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhhcc---CCCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3477899999999975 499999994 3333333444444322 12346777888888888888888877654
No 234
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=48.44 E-value=1.7e+02 Score=33.88 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=69.8
Q ss_pred HHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 47 AVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 47 ~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
.....|++.|+.|. -+.++...+..+... .||.|-+|-.+- +.....+++.|.......++.| +..+-++
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l--~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-ia~gVe~ 758 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVSL--PVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV-VAEGVET 758 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhhC--CCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeE-EEEcCCC
Confidence 34456778899876 466888888888776 799999998542 1123445665544332244543 4566777
Q ss_pred HHHHHHHHHcCCCE----EEeCCCCHHHHHHHHHH
Q 008761 120 VSVVVKCLRLGAAD----YLVKPLRTNELLNLWTH 150 (554)
Q Consensus 120 ~e~~~eAL~aGA~D----yL~KP~~~eeL~~~L~~ 150 (554)
.+....+.++|++- |+.||...++|...++.
T Consensus 759 ~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 88888889999874 58899999998875543
No 235
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=48.44 E-value=1e+02 Score=35.64 Aligned_cols=94 Identities=13% Similarity=0.269 Sum_probs=53.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+.+.+||.|+...+.++ +.|+.|+..+ +-.+.++.+.-. +.+++++-..-+. .-..++..+++.. ++++
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi~--~A~~vvv~~~d~~-~n~~i~~~ar~~~--p~~~ 493 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGAA--KAEVLINAIDDPQ-TSLQLVELVKEHF--PHLQ 493 (621)
T ss_pred CCCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhcCCC--cCCEEEEEeCCHH-HHHHHHHHHHHhC--CCCe
Confidence 456677777766444333 3456555332 233344443333 5777776653322 2355666666543 6777
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
||+-+ .+.+...+..++||+..+.
T Consensus 494 iiaRa--~d~~~~~~L~~~Gad~v~~ 517 (621)
T PRK03562 494 IIARA--RDVDHYIRLRQAGVEKPER 517 (621)
T ss_pred EEEEE--CCHHHHHHHHHCCCCEEeh
Confidence 76644 3456677788899997653
No 236
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=48.14 E-value=3e+02 Score=29.86 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=66.2
Q ss_pred CcEEEEEeCCHH----HHHHHHHHHhhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecC-----CC------CCcH
Q 008761 32 KVRILLCDNDSN----SSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVD-----LP------MTKG 93 (554)
Q Consensus 32 kirVLIVDDd~~----~r~~L~~lL~~~g-~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~-----MP------~mDG 93 (554)
.+.+++||-.-- +.+.++.+=...+ ..|+ -+.+++.|.+++.. ..|.|.+.+- -. +..-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a---GAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc---CCCEEEEcccCCCcccCceeCCCCcCH
Confidence 467888885433 3333333333332 3333 25578888888865 4799877631 11 1124
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
++++..+........+|||.=.+-.....+.+||.+||+..+.=
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 55555555443335789999998888889999999999999875
No 237
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=47.99 E-value=1.8e+02 Score=29.77 Aligned_cols=106 Identities=11% Similarity=0.109 Sum_probs=66.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++++||.+.+.. ..+...+ .....+.-.-+.++..+.+.. .|++++-.. ..-|+.+++.+. ..+|||
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama-----~G~Pvi 288 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA-----SGTPVI 288 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH-----cCCCEE
Confidence 678888877643 3344311 122333333456667777753 587776544 344666776665 467988
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
.... .. ..+.+..|..+++..|-+.++|.+.|..++...
T Consensus 289 ~~~~-~~---~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 289 AYGK-GG---ALETVIDGVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred EeCC-CC---CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 6543 22 223455677889999999999999888887643
No 238
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=47.93 E-value=2e+02 Score=29.09 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCCceEEEE-ecCCCC-Cc--HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcC-CCEEEe
Q 008761 65 PRQVIDALNAEGSDIDLILA-EVDLPM-TK--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLG-AADYLV 136 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILL-Di~MP~-mD--GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aG-A~DyL~ 136 (554)
..+..+.+.+. ..|.|++ |+.--+ +. .+++++++.+. ..+|||....-.+.+.+.+++..| |+..+.
T Consensus 157 ~~~~~~~l~~~--G~~~iivt~i~~~g~~~g~~~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 157 AVEWAKEVEKL--GAGEILLTSMDKDGTKSGYDLELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred HHHHHHHHHHc--CCCEEEEeCcCcccCCCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 34455555544 4675554 432211 12 26888888865 578999988889999999999988 887543
No 239
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.91 E-value=1.8e+02 Score=30.78 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=58.9
Q ss_pred CCCcE-EEEEeC--CHH---HHHHHHHHHhhCCCEEEEECCHHHHHHH----------------HHhcCCCceEEEEecC
Q 008761 30 RSKVR-ILLCDN--DSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDA----------------LNAEGSDIDLILAEVD 87 (554)
Q Consensus 30 mskir-VLIVDD--d~~---~r~~L~~lL~~~g~eV~~A~dg~EALe~----------------L~~~~~~PDLILLDi~ 87 (554)
|++++ |+||-. .+. ....|...|...|++|.........+.. .......+|+|++
T Consensus 2 ~~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~--- 78 (306)
T PRK03372 2 MTASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV--- 78 (306)
T ss_pred CCCccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE---
Confidence 33444 888732 233 3455666677788888765433222110 0011114677765
Q ss_pred CCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 88 LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 88 MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
-|.|| .+|+..+... ...+||+=+-. |=..||.- +..+++...+.++++.
T Consensus 79 -lGGDG-T~L~aar~~~-~~~~PilGIN~-------------G~lGFL~~-~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 79 -LGGDG-TILRAAELAR-AADVPVLGVNL-------------GHVGFLAE-AEAEDLDEAVERVVDR 128 (306)
T ss_pred -EcCCH-HHHHHHHHhc-cCCCcEEEEec-------------CCCceecc-CCHHHHHHHHHHHHcC
Confidence 26677 3444444322 24678885543 66778874 6778888888887654
No 240
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=47.82 E-value=58 Score=34.42 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=42.6
Q ss_pred cHHHHHHHHHhccCCCCceEE--EEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVI--MMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWR 153 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPII--VLSs~~d~e~~~eAL~aGA~DyL~-----KP~~~eeL~~~L~~llr 153 (554)
.++++++++.+. ..+||| ....-...+.+..++++||+.++. |.-++.+....+...+.
T Consensus 190 ~~~elL~ei~~~---~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 190 APYELVKEVAEL---GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred CCHHHHHHHHHh---CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 478899999875 468998 555666889999999999999854 44455555555544443
No 241
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=47.63 E-value=2.9e+02 Score=28.79 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=38.5
Q ss_pred ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHH-HH------------HHHHHcC--CCEEEeCCCCHHH
Q 008761 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVS-VV------------VKCLRLG--AADYLVKPLRTNE 143 (554)
Q Consensus 79 PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e-~~------------~eAL~aG--A~DyL~KP~~~ee 143 (554)
.|++++. .|...+ +++. ..+|+|++-...... .. .+.+..+ +..++.+..+.++
T Consensus 262 aDl~v~~------sG~~~l-Ea~a----~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 330 (380)
T PRK00025 262 ADAALAA------SGTVTL-ELAL----LKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEK 330 (380)
T ss_pred CCEEEEC------ccHHHH-HHHH----hCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHH
Confidence 4666663 366666 4444 567988774322111 11 1122111 3557778888899
Q ss_pred HHHHHHHHHHHHH
Q 008761 144 LLNLWTHMWRRRR 156 (554)
Q Consensus 144 L~~~L~~llr~~r 156 (554)
|...+..++....
T Consensus 331 l~~~i~~ll~~~~ 343 (380)
T PRK00025 331 LARALLPLLADGA 343 (380)
T ss_pred HHHHHHHHhcCHH
Confidence 9988888876443
No 242
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=47.34 E-value=1.7e+02 Score=29.78 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=52.8
Q ss_pred hCCCEEEEECCH--------HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHH
Q 008761 54 KCSYQVTSVRSP--------RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (554)
Q Consensus 54 ~~g~eV~~A~dg--------~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~e 125 (554)
+.+++|..+.+| +.|.....+ .++||+||.----|...|-...++|... ..+|.|+++.-... .+..
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e-~~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg~-~vkd 103 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLE-EFNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPGL-KVKD 103 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHH-hcCCCEEEEeCCCCCCCCchHHHHHHhh---cCCCEEEecCCccc-hhHH
Confidence 446777665543 233333322 2489999998877888898888888765 68899999976543 3445
Q ss_pred HHHcCCCEE-EeCC
Q 008761 126 CLRLGAADY-LVKP 138 (554)
Q Consensus 126 AL~aGA~Dy-L~KP 138 (554)
.|+.-..+| |.|+
T Consensus 104 eleeqGlGYIivk~ 117 (277)
T COG1927 104 ELEEQGLGYIIVKA 117 (277)
T ss_pred HHHhcCCeEEEecC
Confidence 555555666 5554
No 243
>PRK14974 cell division protein FtsY; Provisional
Probab=47.30 E-value=2.4e+02 Score=30.31 Aligned_cols=102 Identities=14% Similarity=0.220 Sum_probs=52.5
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHhhCCCEEEEEC---C----HHHHHHHHHhcCCCceEEEEecC--CCC-CcHHHHHH
Q 008761 32 KVRILLCDNDS---NSSDAVFSLLVKCSYQVTSVR---S----PRQVIDALNAEGSDIDLILAEVD--LPM-TKGLKMLK 98 (554)
Q Consensus 32 kirVLIVDDd~---~~r~~L~~lL~~~g~eV~~A~---d----g~EALe~L~~~~~~PDLILLDi~--MP~-mDGlElLr 98 (554)
..+|+|++-|. ...+.|.......|..+.... + ..++++.+... ..|+||+|.. ++. .+-++-|+
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTaGr~~~~~~lm~eL~ 245 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTAGRMHTDANLMDELK 245 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECCCccCCcHHHHHHHH
Confidence 46898888773 334455555555666555332 2 23455555544 6899999984 221 11122333
Q ss_pred HHHhccCCCCceEEEEecCCCHHHH--HHHH--HcCCCEEEe
Q 008761 99 YITRDKELQRIPVIMMSAQDEVSVV--VKCL--RLGAADYLV 136 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~d~e~~--~eAL--~aGA~DyL~ 136 (554)
.|.... .++.-++|+++....+.. .+.+ ..|.+.+|.
T Consensus 246 ~i~~~~-~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 246 KIVRVT-KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHhh-CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 333221 244556666664433322 2222 257777644
No 244
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=46.96 E-value=2.2e+02 Score=28.69 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCCce-EEEEecCC-CCCc--HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHc-CCCEEEeC--
Q 008761 65 PRQVIDALNAEGSDID-LILAEVDL-PMTK--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL-GAADYLVK-- 137 (554)
Q Consensus 65 g~EALe~L~~~~~~PD-LILLDi~M-P~mD--GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~a-GA~DyL~K-- 137 (554)
..+.++.+... ..+ +++.|+.- ..+. -+++++++.+. ..+|||.-..-.+.+.+.++++. ||+..+.=
T Consensus 155 ~~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 155 AVEWAKEVEEL--GAGEILLTSMDRDGTKNGYDLELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred HHHHHHHHHHc--CCCEEEEcCCcCCCCCCCcCHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 34555555544 455 56656542 1112 36788888764 46899988888888889899975 99888762
Q ss_pred ----CCCHHHHHHHH
Q 008761 138 ----PLRTNELLNLW 148 (554)
Q Consensus 138 ----P~~~eeL~~~L 148 (554)
-++..+++..+
T Consensus 230 l~~~~~~~~~~~~~~ 244 (253)
T PRK02083 230 FHFGEITIGELKAYL 244 (253)
T ss_pred HHcCCCCHHHHHHHH
Confidence 34455554443
No 245
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=46.92 E-value=1.4e+02 Score=30.73 Aligned_cols=63 Identities=14% Similarity=0.292 Sum_probs=41.3
Q ss_pred HHHHHhhCCCEEEEECC-------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 48 VFSLLVKCSYQVTSVRS-------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 48 L~~lL~~~g~eV~~A~d-------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
+.+.|+..||.|....+ ..+.++.++.. +||+||+|.- ..+. +..+.++. ...+++++....+
T Consensus 45 ~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~--~~d~vV~D~y--~~~~-~~~~~~k~----~~~~l~~iDD~~~ 114 (279)
T TIGR03590 45 LIDLLLSAGFPVYELPDESSRYDDALELINLLEEE--KFDILIVDHY--GLDA-DWEKLIKE----FGRKILVIDDLAD 114 (279)
T ss_pred HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhc--CCCEEEEcCC--CCCH-HHHHHHHH----hCCeEEEEecCCC
Confidence 34577788998875543 44677777765 7999999985 3333 34556664 2347788886543
No 246
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=46.77 E-value=2.3e+02 Score=29.51 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=51.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCC-----CCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDL-----PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~M-----P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.+.+.++|..+... ..|.|++.-+- .+...++++.++++.. ...+|||.-.+-.+...+.+++.+||+...
T Consensus 179 ~v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-~~~ipvia~GGI~~~~d~~kal~lGAd~V~ 254 (299)
T cd02809 179 GILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAV-GGRIEVLLDGGIRRGTDVLKALALGADAVL 254 (299)
T ss_pred ecCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 44667777665543 48888875432 1234577888886542 125899888888899999999999999984
Q ss_pred -eCCC
Q 008761 136 -VKPL 139 (554)
Q Consensus 136 -~KP~ 139 (554)
-.|+
T Consensus 255 ig~~~ 259 (299)
T cd02809 255 IGRPF 259 (299)
T ss_pred EcHHH
Confidence 3443
No 247
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.74 E-value=2.6e+02 Score=29.05 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=57.7
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 34 RILLCDNDSNSSDAVFSLL----VKCS--YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL----~~~g--~eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
.|||.|++-.+.-.+...+ +..+ ..+ +++.+.+++.+.+.. .+|.|.+|-. +.+.++++.+...
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~-----~~e~l~~~~~~~~- 224 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNM-----SPEELREAVALLK- 224 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCc-----CHHHHHHHHHHcC-
Confidence 5788887654442222222 2223 223 488999999998764 5899999954 2466666654321
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
.++||++ ++--+.+.+.+..+.|++.+
T Consensus 225 ~~ipi~A-iGGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 225 GRVLLEA-SGGITLENIRAYAETGVDYI 251 (268)
T ss_pred CCCcEEE-ECCCCHHHHHHHHHcCCCEE
Confidence 1467554 44566778888999999876
No 248
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=46.73 E-value=3.7e+02 Score=28.20 Aligned_cols=108 Identities=13% Similarity=0.227 Sum_probs=68.3
Q ss_pred cEEEEEeCC---H-HHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 33 VRILLCDND---S-NSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 33 irVLIVDDd---~-~~r~~L~~lL~~~g~--eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
++++||.+. . .....+..+++..+. .|.... +.++..+.+. ..|+.++-.. ...-|+.+++.+.
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~----~ad~~v~ps~-~E~~g~~~lEAma--- 324 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYR----AADVVAVPSY-NESFGLVAMEAQA--- 324 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHH----hCCEEEECCC-CCCcChHHHHHHH---
Confidence 677777641 1 344556666665553 344332 3456666665 3587776533 3344677777775
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
..+|||+... .. ..+.+..|...++..|-+.++|.+.|.+++..
T Consensus 325 --~G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 325 --CGTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLDD 368 (405)
T ss_pred --cCCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHhC
Confidence 4678876443 22 22455678889999999999999998888764
No 249
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=46.62 E-value=1.9e+02 Score=31.53 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=46.2
Q ss_pred ceEEEEecCCCCCcHHH-HHHHHHhccCCCCceEEEEe-cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008761 79 IDLILAEVDLPMTKGLK-MLKYITRDKELQRIPVIMMS-AQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (554)
Q Consensus 79 PDLILLDi~MP~mDGlE-lLr~Ir~~~~~~~iPIIVLS-s~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~l 151 (554)
.+.+|++..-+..=-+| ++..+.. ....||... ...+...+..+|+.|+++.+.+|-+..++......+
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~----~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~ 167 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQG----SSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALL 167 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcC----CCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 46666655444333333 5555543 344565444 456677899999999999999999999988765544
No 250
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.58 E-value=3.4e+02 Score=27.93 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=32.0
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
++++++|++. ..+|||....-.+.+.+.+++.+||+.+
T Consensus 220 ~~~i~~i~~~---~~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 220 LRMVYQVYKA---VEIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 5778888764 4789999888889999999999999765
No 251
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.52 E-value=1.4e+02 Score=31.45 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=47.2
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 59 V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.+.+.+.+++.+.+.. .+|+|+|| .|.--+--++++.++.. .+-..|..|+.-+.+.+.+-...|++-+-
T Consensus 203 eVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~---~~~v~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 203 EVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDAR---APTVLLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhcc---CCCEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4478899999999865 58999999 33322222334433332 22246777888888888888889987653
No 252
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=46.31 E-value=1.3e+02 Score=31.15 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=52.0
Q ss_pred hCCCEEEEECCH-----HHHH---H-HHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHH
Q 008761 54 KCSYQVTSVRSP-----RQVI---D-ALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (554)
Q Consensus 54 ~~g~eV~~A~dg-----~EAL---e-~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~ 124 (554)
+.+++|.++.+| +++- . ++.+ +.||++|+=---|...|-.-.+++... ..+|.|++|........
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~~- 102 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEE--WKPDFVIVISPNPAAPGPKKAREILKA---AGIPCIVIGDAPGKKVK- 102 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHh--hCCCEEEEECCCCCCCCchHHHHHHHh---cCCCEEEEcCCCccchH-
Confidence 346777776653 3332 2 2233 489999987666666776666766654 57899999976554433
Q ss_pred HHHHcCCCEEEeCC
Q 008761 125 KCLRLGAADYLVKP 138 (554)
Q Consensus 125 eAL~aGA~DyL~KP 138 (554)
++|+..-.+||.-+
T Consensus 103 d~l~~~g~GYIivk 116 (277)
T PRK00994 103 DAMEEQGLGYIIVK 116 (277)
T ss_pred HHHHhcCCcEEEEe
Confidence 78877777886554
No 253
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=46.29 E-value=1.3e+02 Score=30.13 Aligned_cols=69 Identities=28% Similarity=0.296 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCCC-cH--HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 63 RSPRQVIDALNAEGSDIDLILAEVDLPMT-KG--LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 63 ~dg~EALe~L~~~~~~PDLILLDi~MP~m-DG--lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+..+..+.+... ..-+|++|+.--++ .| +++++++.+. ..+|||+-.+-.+.+.+.++...||+..+.
T Consensus 141 ~~~~~~~~~~~~~--g~~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 141 ESLEEVRDFLNSF--DYGLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred ccHHHHHHHHHhc--CCEEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3556666666544 34789999976543 33 7889998865 578988877788888888889999998875
No 254
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.25 E-value=1.5e+02 Score=30.82 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=55.6
Q ss_pred cEEEEEe--CC---HHHHHHHHHHHhhCCCEEEEECCHHHHHH--------HHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 33 VRILLCD--ND---SNSSDAVFSLLVKCSYQVTSVRSPRQVID--------ALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 33 irVLIVD--Dd---~~~r~~L~~lL~~~g~eV~~A~dg~EALe--------~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
+||.||- .. ......|..+|...|++|.......+.+. .+.. .++|+|++ -|.||. +++.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~----iGGDGT-lL~a 73 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIA----IGGDGT-ILRI 73 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEE----EeCcHH-HHHH
Confidence 3677762 22 23344566667778888776543221111 1111 14677775 266773 4444
Q ss_pred HHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 100 ITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 100 Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++ .. ...+||+.+.. |=.+||. .+..+++...+.++++.
T Consensus 74 ~~-~~-~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 74 EH-KT-KKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred HH-hc-CCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcC
Confidence 54 22 24789887764 3345665 56678888877777654
No 255
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=46.14 E-value=1.2e+02 Score=29.38 Aligned_cols=68 Identities=9% Similarity=0.183 Sum_probs=48.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC--CCEEEEEC------CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC--SYQVTSVR------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~--g~eV~~A~------dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
...+|.++...+...+.+.+.|... +.+|.... ..++.++.+.+. .||+|++-+.+|...- ++.+.+.
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~--~~~~~~~ 122 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEI--WMRNHRH 122 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHH--HHHHhHH
Confidence 4579999999999999999988765 45555321 123346666665 7999999999998764 3445543
No 256
>PLN02591 tryptophan synthase
Probab=46.11 E-value=2.6e+02 Score=28.77 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=63.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EE-CCH-HHHHHHHHhcCCCceEEEEecCC--CC------CcHHHHHHHHHh
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVT-SV-RSP-RQVIDALNAEGSDIDLILAEVDL--PM------TKGLKMLKYITR 102 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~-~A-~dg-~EALe~L~~~~~~PDLILLDi~M--P~------mDGlElLr~Ir~ 102 (554)
-|||.|-...-...+...+.+.|+..+ .+ .+. ++=++.+.+. ..+.|-+=-.+ .+ .+-.++++++++
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~--~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA--SEGFVYLVSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh--CCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 467777666666677777788887644 33 333 3444555554 34555431111 11 122456777776
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
. ..+||++=.+-.+.+.+.+++..||+..+.-.
T Consensus 187 ~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 V---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred c---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 3 68899875566778889999999999998865
No 257
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.96 E-value=2.4e+02 Score=29.46 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=58.9
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 34 RILLCDNDSNSSDAVFSLL----VKCS--YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL----~~~g--~eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
.|||=|.+-.+.-.+...+ +..+ ..| +++.+.+++.+.+.. .+|.|.+|- -|.+.++++.+...
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~- 230 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVP- 230 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcC-
Confidence 5777776654443344433 2233 234 388999999988754 599999973 35677777765421
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.++| |+.++--..+.+.+..+.||+.+-
T Consensus 231 ~~i~-i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 231 SAIV-TEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred CCce-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 2333 334455678888899999998774
No 258
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=45.91 E-value=1.9e+02 Score=32.79 Aligned_cols=94 Identities=7% Similarity=0.102 Sum_probs=45.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...|++||.|+...+.++ +.|+.+...+ .-.+.++.+.-. +.|.+++-..=.. +-..++..+++.. +.++
T Consensus 440 g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i~--~a~~viv~~~~~~-~~~~iv~~~~~~~--~~~~ 510 (558)
T PRK10669 440 GIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHLD--CARWLLLTIPNGY-EAGEIVASAREKR--PDIE 510 (558)
T ss_pred CCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCcc--ccCEEEEEcCChH-HHHHHHHHHHHHC--CCCe
Confidence 345566665554333222 2345444322 223444444333 5666655432211 1123444455443 5677
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
||+-.. +.+......++||+..+.
T Consensus 511 iiar~~--~~~~~~~l~~~Gad~vv~ 534 (558)
T PRK10669 511 IIARAH--YDDEVAYITERGANQVVM 534 (558)
T ss_pred EEEEEC--CHHHHHHHHHcCCCEEEC
Confidence 776654 334455556789886663
No 259
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=45.64 E-value=1.2e+02 Score=32.66 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=42.0
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhCCCEEEEE---------CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHH
Q 008761 33 VRILLCDNDSN-----SSDAVFSLLVKCSYQVTSV---------RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLK 98 (554)
Q Consensus 33 irVLIVDDd~~-----~r~~L~~lL~~~g~eV~~A---------~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr 98 (554)
-|+|||-|... ....+...|+..|.++..+ .+..++++.+++. ++|+||- +.|.+-+++.+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE--GCDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHHH
Confidence 48999998654 3356777787777766544 2356777777766 7999883 44656666655
Q ss_pred HH
Q 008761 99 YI 100 (554)
Q Consensus 99 ~I 100 (554)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 54
No 260
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=45.37 E-value=1.3e+02 Score=32.35 Aligned_cols=63 Identities=24% Similarity=0.291 Sum_probs=41.9
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHhhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHH
Q 008761 33 VRILLCDNDSNS-----SDAVFSLLVKCSYQVTSVR---------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLK 98 (554)
Q Consensus 33 irVLIVDDd~~~-----r~~L~~lL~~~g~eV~~A~---------dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr 98 (554)
-|+|||-|.... ...+...|+..|+++..+. +..++++.+++. .+|+||- +.+..-+++.+
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~aK 103 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEE--KVDFILA---VGGGSVIDSAK 103 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCChHHHHHHH
Confidence 489999776444 3567778888787766543 355677777766 7999873 44555555555
Q ss_pred HH
Q 008761 99 YI 100 (554)
Q Consensus 99 ~I 100 (554)
.+
T Consensus 104 ~i 105 (382)
T cd08187 104 AI 105 (382)
T ss_pred HH
Confidence 44
No 261
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=45.36 E-value=2e+02 Score=27.44 Aligned_cols=84 Identities=11% Similarity=0.137 Sum_probs=48.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHH---HHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhc
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRD 103 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EA---Le~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~ 103 (554)
+|++.+|||...+..+...|.+.|.+.|++|. ...+.... ...+.....++.++.+|+.-+ ..+ .+++.+...
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~~~~~~~ 79 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDE--AAVRALIEAAVEA 79 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCH--HHHHHHHHHHHHH
Confidence 45556899999999999999999888899877 44443332 233332222345555666433 222 344444332
Q ss_pred cCCCCceEEEEec
Q 008761 104 KELQRIPVIMMSA 116 (554)
Q Consensus 104 ~~~~~iPIIVLSs 116 (554)
...+-+|+..+
T Consensus 80 --~~~id~vi~~a 90 (246)
T PRK05653 80 --FGALDILVNNA 90 (246)
T ss_pred --hCCCCEEEECC
Confidence 13445555543
No 262
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=44.95 E-value=2.1e+02 Score=29.51 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCceEEEEecCC----CC---CcHHHHHHHHHhccCCCCceEEEEecC-CC-----HHHHHHHHHcCC
Q 008761 65 PRQVIDALNAEGSDIDLILAEVDL----PM---TKGLKMLKYITRDKELQRIPVIMMSAQ-DE-----VSVVVKCLRLGA 131 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILLDi~M----P~---mDGlElLr~Ir~~~~~~~iPIIVLSs~-~d-----~e~~~eAL~aGA 131 (554)
...|++.+...+ ..+|+||.... |. .--+..+..+++. .++||++=+++ .. ......|..+||
T Consensus 148 ~~~Ave~i~~~G-n~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~---~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga 223 (260)
T TIGR01361 148 WLYAAEYILSSG-NGNVILCERGIRTFEKATRNTLDLSAVPVLKKE---THLPIIVDPSHAAGRRDLVIPLAKAAIAAGA 223 (260)
T ss_pred HHHHHHHHHHcC-CCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh---hCCCEEEcCCCCCCccchHHHHHHHHHHcCC
Confidence 455777776542 57999998622 21 1234555556543 46899884544 33 456678999999
Q ss_pred CE-EEeCCCC
Q 008761 132 AD-YLVKPLR 140 (554)
Q Consensus 132 ~D-yL~KP~~ 140 (554)
+. +|.|-++
T Consensus 224 ~gl~iE~H~t 233 (260)
T TIGR01361 224 DGLMIEVHPD 233 (260)
T ss_pred CEEEEEeCCC
Confidence 88 7777654
No 263
>PRK01362 putative translaldolase; Provisional
Probab=44.49 E-value=1.2e+02 Score=30.41 Aligned_cols=84 Identities=18% Similarity=0.078 Sum_probs=50.4
Q ss_pred HHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEec---CCCCCcHHHHHHHHHhccCCCC-ceEEEEecCCCHHHHH
Q 008761 51 LLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEV---DLPMTKGLKMLKYITRDKELQR-IPVIMMSAQDEVSVVV 124 (554)
Q Consensus 51 lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi---~MP~mDGlElLr~Ir~~~~~~~-iPIIVLSs~~d~e~~~ 124 (554)
.|...|+.|. .+-+..+|+...... ++.|-.=+ .-.+.||+++++.+.+...... -.-|+..+..+...+.
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~ 172 (214)
T PRK01362 96 ALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVL 172 (214)
T ss_pred HHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHH
Confidence 4455565433 445666666665542 44433211 1135789998888876432222 2455566778889999
Q ss_pred HHHHcCCCEEEeC
Q 008761 125 KCLRLGAADYLVK 137 (554)
Q Consensus 125 eAL~aGA~DyL~K 137 (554)
+++.+|++-+-.-
T Consensus 173 ~~~~~G~d~iTi~ 185 (214)
T PRK01362 173 EAALAGADIATIP 185 (214)
T ss_pred HHHHcCCCEEecC
Confidence 9999999955443
No 264
>PRK05637 anthranilate synthase component II; Provisional
Probab=44.09 E-value=42 Score=33.35 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=35.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILL 84 (554)
-+|||||-...+...|...|+..|+.+.+...... ++.+... .||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEE
Confidence 47999999888888899999999987776554322 3333333 6888887
No 265
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=44.02 E-value=2.2e+02 Score=29.46 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 34 RILLCDNDSNSSDAVFSLL----VKCS--YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL----~~~g--~eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
.|||.|++-.+.-.+...+ +..+ ..+ +++.+.+++++.+.. .+|.|.+|-.-| +-++++.+...
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~- 220 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLK- 220 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhc-
Confidence 6788887654433222222 2233 233 488999999998864 589999987544 44444443211
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..+||+ .++--+.+.+.+..+.||+.+-.
T Consensus 221 ~~ipi~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 221 GRVLLE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCCcEE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 236654 45556778888999999987743
No 266
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=43.87 E-value=2e+02 Score=29.33 Aligned_cols=81 Identities=9% Similarity=0.096 Sum_probs=48.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC---EEE--EEC---CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSY---QVT--SVR---SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~---eV~--~A~---dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
-+|.|+-++......+..+++..+. .|. ... +....+..++.. .||+|++... ..+...+++++++..
T Consensus 130 ~~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~--~~d~vv~~~~--~~~~~~~~~qa~~~g 205 (327)
T cd06382 130 KSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNS--GDNRIIIDCS--ADILIELLKQAQQVG 205 (327)
T ss_pred cEEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhc--CceEEEEECC--HHHHHHHHHHHHHhC
Confidence 4565555555566777788876543 332 222 456677777665 7899998654 455777888887765
Q ss_pred CCCCceEEEEecC
Q 008761 105 ELQRIPVIMMSAQ 117 (554)
Q Consensus 105 ~~~~iPIIVLSs~ 117 (554)
......+.+++..
T Consensus 206 ~~~~~~~~i~~~~ 218 (327)
T cd06382 206 MMSEYYHYIITNL 218 (327)
T ss_pred ccccceEEEEecC
Confidence 3333333444543
No 267
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.76 E-value=3.6e+02 Score=29.40 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCC-------CCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDL-------PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~M-------P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+-.+.+.+. ..|+|+++... +..+...+.+.+++ ..+|||. ..-...+.+.+++++||+.++.
T Consensus 142 ~~~e~a~~l~ea--Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~----~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEA--GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE----LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCcCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 455666666655 79999997532 12245566666554 3688876 4556677888899999999865
No 268
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=43.12 E-value=70 Score=31.87 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=49.2
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEecCC---CCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008761 56 SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDL---PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (554)
Q Consensus 56 g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~M---P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~ 132 (554)
++.|....+.+++.+++... .|+|-+|... | ..--+++++|+.. . .++|..-...+....|.++|++
T Consensus 45 ~~~V~ITPT~~ev~~l~~aG---adIIAlDaT~R~Rp-~~l~~li~~i~~~---~---~l~MADist~ee~~~A~~~G~D 114 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEAG---ADIIALDATDRPRP-ETLEELIREIKEK---Y---QLVMADISTLEEAINAAELGFD 114 (192)
T ss_dssp TSS--BS-SHHHHHHHHHCT----SEEEEE-SSSS-S-S-HHHHHHHHHHC---T---SEEEEE-SSHHHHHHHHHTT-S
T ss_pred CCCeEECCCHHHHHHHHHcC---CCEEEEecCCCCCC-cCHHHHHHHHHHh---C---cEEeeecCCHHHHHHHHHcCCC
Confidence 45788888999999998764 8999999844 5 6778899999874 2 6778888899999999999965
Q ss_pred E
Q 008761 133 D 133 (554)
Q Consensus 133 D 133 (554)
-
T Consensus 115 ~ 115 (192)
T PF04131_consen 115 I 115 (192)
T ss_dssp E
T ss_pred E
Confidence 3
No 269
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=43.09 E-value=2.1e+02 Score=28.70 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=47.9
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCC------CCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 62 VRSPRQVIDALNAEGSDIDLILAEVDLP------MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 62 A~dg~EALe~L~~~~~~PDLILLDi~MP------~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
..+..++.+... . .+|.|.+.-..+ .--|+++++++.+. ..+||+.|.+- ..+.+.+++++||+.+
T Consensus 118 ~~s~~~a~~A~~-~--gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~---~~iPvvAIGGI-~~~n~~~~~~~GA~gi 189 (221)
T PRK06512 118 LRDRHGAMEIGE-L--RPDYLFFGKLGADNKPEAHPRNLSLAEWWAEM---IEIPCIVQAGS-DLASAVEVAETGAEFV 189 (221)
T ss_pred CCCHHHHHHhhh-c--CCCEEEECCCCCCCCCCCCCCChHHHHHHHHh---CCCCEEEEeCC-CHHHHHHHHHhCCCEE
Confidence 346776766443 3 589998865431 12478899888764 57999999875 5677889999999988
No 270
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=42.92 E-value=2.1e+02 Score=28.79 Aligned_cols=105 Identities=13% Similarity=0.200 Sum_probs=58.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
.++++|+.+.+. ...+.+.+...+. .|.......+..+.+. ..|++++-.... .-|..+++.+. ..+
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~ad~~v~~s~~e-~~~~~~~Ea~a-----~G~ 287 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYN----AADLFVLSSAWE-GFGLVVAEAMA-----CEL 287 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHH----hhceEEeccccc-CCChHHHHHHH-----cCC
Confidence 467777776553 3445555554442 3444443344444444 247766643332 23667777765 456
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|||+ +...... +.+.- .+++..+.+.+++.+.+..++.
T Consensus 288 PvI~-~~~~~~~---e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 288 PVVA-TDAGGVR---EVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred CEEE-ecCCChh---hEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 7764 3332221 11221 5677788899999998888863
No 271
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=42.88 E-value=2e+02 Score=33.49 Aligned_cols=122 Identities=20% Similarity=0.289 Sum_probs=82.4
Q ss_pred CCCCcCCCCCcEEEEEeCCHHHHHHHHHHHhhCCC----EEE----EECC---HHHH----------HHHHHhcCCCceE
Q 008761 23 SGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSY----QVT----SVRS---PRQV----------IDALNAEGSDIDL 81 (554)
Q Consensus 23 ~~~~~~~mskirVLIVDDd~~~r~~L~~lL~~~g~----eV~----~A~d---g~EA----------Le~L~~~~~~PDL 81 (554)
.|.+.++.++..||+|..+..-...+...|+..+. ++. +|-| ..++ +..++.. .+||
T Consensus 227 ~G~g~idksKP~il~iGHnv~~~~~i~dyleE~~l~d~vE~~GlccTA~D~tRy~~~aKvvGpls~ql~~IrsG--~aDV 304 (772)
T COG1152 227 IGMGTIDKSKPTILVIGHNVAPGTYIMDYLEENGLEDEVELAGLCCTAIDMTRYDEAAKVVGPLSKQLKVIRSG--KADV 304 (772)
T ss_pred ecCCccCCCCceEEEeccccccchHHHHHHHhccchhhhheeeeeeeccccchhhhhhhhhchhhhhhhhhhcC--CceE
Confidence 45667888899999999999988889999986552 322 2222 1222 3444444 7999
Q ss_pred EEEecCCCCCcHHHHHHHHHhccCCCCceEEEEe----------cCCCHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHH
Q 008761 82 ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS----------AQDEVSVVVKCLRLGAAD-YLVKPLRTNELLNLWTH 150 (554)
Q Consensus 82 ILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLS----------s~~d~e~~~eAL~aGA~D-yL~KP~~~eeL~~~L~~ 150 (554)
|++|-+-...|-++-..+ ..+|+|.-. +..+.+.+++.|..|... ||.-|...-++.-.+..
T Consensus 305 iVvDEqCir~Dileea~k-------~g~~vIat~~k~~~gLpD~Td~~~d~iV~~L~sg~~g~~lld~~K~gevav~vA~ 377 (772)
T COG1152 305 IVVDEQCIREDILEEASK-------LGIPVIATNEKGMLGLPDVTDEDVDEIVESLVSGEPGVVLLDPLKAGEVAVEVAE 377 (772)
T ss_pred EEecccccchhHHHHHhc-------cCCceEechhHHhcCCCccccCCHHHHHHHHhcCCCceeecchHHhhHHHHHHHH
Confidence 999999988877655444 345777554 235677899999999644 56667766666555444
Q ss_pred HHH
Q 008761 151 MWR 153 (554)
Q Consensus 151 llr 153 (554)
.+.
T Consensus 378 ~v~ 380 (772)
T COG1152 378 AVE 380 (772)
T ss_pred HHH
Confidence 443
No 272
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=42.77 E-value=1.2e+02 Score=34.22 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCCC-cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 63 RSPRQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 63 ~dg~EALe~L~~~~~~PDLILLDi~MP~m-DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.+..+-++.|... ..|+|++|..-+.. .-++++++|+.. ++++|||+ ..-...+.+..++++||+.+-
T Consensus 224 ~~~~~ra~~Lv~a--GVd~i~~D~a~g~~~~~~~~i~~i~~~--~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLDA--GVDVLVIDTAHGHQVKMISAIKAVRAL--DLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHHh--CCCEEEEeCCCCCcHHHHHHHHHHHHH--CCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 4455555555544 69999999977544 346788899874 36788775 335667888899999997764
No 273
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.74 E-value=84 Score=32.80 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=38.1
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQ------DEVSVVVKCLRLGAADYLVKPLRTNELL 145 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~------~d~e~~~eAL~aGA~DyL~KP~~~eeL~ 145 (554)
+-+++++.+++.. ..+|||+|+=. .-.....+|-+.|++.+|.-.+..++-.
T Consensus 80 ~~lel~~~~r~~~--~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~ 137 (265)
T COG0159 80 DTLELVEEIRAKG--VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD 137 (265)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHH
Confidence 4567777887543 78999999943 2244577899999999999776665543
No 274
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=42.73 E-value=1.6e+02 Score=30.94 Aligned_cols=84 Identities=10% Similarity=0.192 Sum_probs=54.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhc--CCCceEEEEecCCCCCc--HHHHHHHHHhccCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAE--GSDIDLILAEVDLPMTK--GLKMLKYITRDKELQ 107 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~--~~~PDLILLDi~MP~mD--GlElLr~Ir~~~~~~ 107 (554)
..-++++||....+..|..+=-...+.-....+..+.+..|... ...-=.++.|-.||..+ |..+++..+. .
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~----~ 105 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAARE----A 105 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHH----c
Confidence 46799999999988766654222221111334555544444321 11345667899999874 9999999987 4
Q ss_pred CceEEEEecCCC
Q 008761 108 RIPVIMMSAQDE 119 (554)
Q Consensus 108 ~iPIIVLSs~~d 119 (554)
.++|+.+.+...
T Consensus 106 gi~V~~lPG~sA 117 (275)
T COG0313 106 GIRVVPLPGPSA 117 (275)
T ss_pred CCcEEecCCccH
Confidence 589998887654
No 275
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=42.55 E-value=1e+02 Score=34.27 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCC-CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 65 PRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILLDi~MP~-mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.+.+..++.. ..|+|.+|..-.. ...++++++|++. ++++|||+ ..-...+.+..++++||+.+.
T Consensus 226 ~~r~~~L~~a---G~d~I~vd~a~g~~~~~~~~i~~i~~~--~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 226 KERAEALVKA---GVDVIVIDSSHGHSIYVIDSIKEIKKT--YPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHhHHHHHHHHHHHh--CCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 4555555543 5999999995443 3467888888875 35778776 445667788899999998874
No 276
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=42.21 E-value=1.3e+02 Score=30.10 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHhccCCCCce-EEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 90 MTKGLKMLKYITRDKELQRIP-VIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 90 ~mDGlElLr~Ir~~~~~~~iP-IIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
+.||+++++.+.+.......+ -|+..+-.+...+.+++.+||+-+-.-|
T Consensus 137 g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~ 186 (211)
T cd00956 137 GGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPP 186 (211)
T ss_pred CCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCH
Confidence 568999888887654333322 3445566778889999999998886654
No 277
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=41.95 E-value=3e+02 Score=28.34 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 91 mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
.-|+.+++.+. ..+|||....... ..+.+.-|..++|..|-+.++|...|..++...
T Consensus 290 g~~~~~lEAma-----~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 290 GFGLSLMEALS-----HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred ccChHHHHHHh-----CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcCH
Confidence 34666777664 4678876432211 123456688899999999999999998887643
No 278
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=41.95 E-value=1.1e+02 Score=30.49 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=49.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEecCCCCCcHHHHHHHHH
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAEG--SDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~-~A~dg~EALe~L~~~~--~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
.-+|.-||-++...+.-+..+...|+ .|. ...++.+.+..+.... ..+|+|++|.. .-+-.+.++.+.
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~--K~~y~~y~~~~~ 142 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD--KRNYLEYFEKAL 142 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST--GGGHHHHHHHHH
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc--ccchhhHHHHHh
Confidence 45999999999999999999998875 344 5678888888876542 26999999985 334445455444
No 279
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=41.77 E-value=2.4e+02 Score=27.07 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhccCCCCceEEE-EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIM-MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIV-LSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~ 147 (554)
-|++++++|++. ...|+++ +..++....+..+.++||+..+......++....
T Consensus 43 ~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~ 96 (210)
T TIGR01163 43 FGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRL 96 (210)
T ss_pred cCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHH
Confidence 588999999863 3456532 4444556678888899999988866544444333
No 280
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=41.74 E-value=3.3e+02 Score=26.23 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=51.2
Q ss_pred HHHHHHHhhCCCEEEEE-CCH----HHHHHHHHhcCCCceEEEEecCCC----CCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTSV-RSP----RQVIDALNAEGSDIDLILAEVDLP----MTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A-~dg----~EALe~L~~~~~~PDLILLDi~MP----~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+.+...+.|..+... .+. +++..++. . .+|+|.+.-... ...+++.+++++... .. +.|++++
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~-~--g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~--~~-~~i~v~G 165 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE-L--GADYIGVHTGLDEQAKGQNPFEDLQTILKLV--KE-ARVAVAG 165 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH-c--CCCEEEEcCCcCcccCCCCCHHHHHHHHHhc--CC-CcEEEEC
Confidence 44555666778777633 232 44444433 3 589887752111 113456666666532 22 4455566
Q ss_pred CCCHHHHHHHHHcCCCEEEe
Q 008761 117 QDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 117 ~~d~e~~~eAL~aGA~DyL~ 136 (554)
-...+.+.+++++||+.++.
T Consensus 166 GI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 166 GINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CcCHHHHHHHHHcCCCEEEE
Confidence 66778888999999998765
No 281
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=41.69 E-value=3.5e+02 Score=30.30 Aligned_cols=94 Identities=10% Similarity=0.170 Sum_probs=60.7
Q ss_pred CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC--------CcHHHHHHHHHhccC------CCCceEEEEecCCCHH
Q 008761 57 YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM--------TKGLKMLKYITRDKE------LQRIPVIMMSAQDEVS 121 (554)
Q Consensus 57 ~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~--------mDGlElLr~Ir~~~~------~~~iPIIVLSs~~d~e 121 (554)
..+. ++.+.+|+.+.... .+|.|.+.--.|- .-|++.++++.+... ...+||+.|.+- +.+
T Consensus 301 ~iIGvStHs~eEl~~A~~~---gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~ 376 (437)
T PRK12290 301 IRLGLSTHGYYELLRIVQI---QPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQS 376 (437)
T ss_pred CEEEEecCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHH
Confidence 3444 67788887776543 6999998764431 147888877655321 126899999874 556
Q ss_pred HHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHHH
Q 008761 122 VVVKCLRLGAADY-----LVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 122 ~~~eAL~aGA~Dy-----L~KP~~~eeL~~~L~~llr~ 154 (554)
.+.++++.||+.+ |...-++.+....+.+++..
T Consensus 377 Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~ 414 (437)
T PRK12290 377 NAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAE 414 (437)
T ss_pred HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhh
Confidence 7888999999987 34444555544445444443
No 282
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=41.68 E-value=1e+02 Score=29.48 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE---------------EECCHHHHHHHHHh--cCCCceEEEEec-CCCCCc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT---------------SVRSPRQVIDALNA--EGSDIDLILAEV-DLPMTK 92 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~---------------~A~dg~EALe~L~~--~~~~PDLILLDi-~MP~mD 92 (554)
++.||||+.....+.+.+.+.|+..++.+. ....+. ....+.. ....+|+||||- +.-+-.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECTTT--SHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEeccccCCHH
Confidence 478999999999999999999987653222 112222 2333322 123699999985 333333
Q ss_pred HHHHHHHHHhccCCCCceEEEEecCC
Q 008761 93 GLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 93 GlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
.+-+.-.|..........+|++|+..
T Consensus 111 sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 111 SIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHhhheeHHHhhhccCeeEEEEeCCC
Confidence 44444445444333456899999753
No 283
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=41.59 E-value=98 Score=34.69 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCC-CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~-mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.++.+.+.+. ..|+|++|..-.. ..-++++++|+... +++|||+ ..-...+.+..++++||+.+.
T Consensus 230 ~e~a~~L~~a--gvdvivvD~a~g~~~~vl~~i~~i~~~~--p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEA--GVDVLVVDTAHGHSEGVLDRVREIKAKY--PDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcchhHHHHHHHHHhhC--CCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 4555555554 6899999975333 34577888888753 5778776 556678889999999998774
No 284
>PRK05670 anthranilate synthase component II; Provisional
Probab=41.49 E-value=36 Score=32.81 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=34.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILL 84 (554)
|||||-...+-..+.++|.+.|+++..........+.+... .||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEE
Confidence 89999999999999999999998877554322112223333 5887777
No 285
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=41.46 E-value=1.1e+02 Score=32.64 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=42.3
Q ss_pred ceEEEEecCCCC-CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 79 IDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 79 PDLILLDi~MP~-mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
+|+|++|..-.. ..-++.+++|++. .+.|+|+.-.-...+.+..++++||+.+..-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~---~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTH---LPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHh---CCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 799999985443 3457888888874 3456666665678889999999999998643
No 286
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=41.28 E-value=1.7e+02 Score=31.75 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=42.9
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 33 VRILLCDNDSN----SSDAVFSLLVKCSYQVTSVR---------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 33 irVLIVDDd~~----~r~~L~~lL~~~g~eV~~A~---------dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
-++|||-|... ....+...|+..|..+..+. +.+++.+.+++. ++|+||- +.|.+-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~--~~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN--NCDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc--CCCEEEE---eCCchHHHHHHH
Confidence 48999987633 34467778887777655443 356777777776 8999882 446666666665
Q ss_pred HH
Q 008761 100 IT 101 (554)
Q Consensus 100 Ir 101 (554)
+.
T Consensus 107 ia 108 (383)
T PRK09860 107 IA 108 (383)
T ss_pred HH
Confidence 53
No 287
>CHL00101 trpG anthranilate synthase component 2
Probab=41.23 E-value=34 Score=33.18 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=35.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILL 84 (554)
|||||-...+-..|.+.|...|+++....+....+..+... .||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999998877666443222233323 5888886
No 288
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.00 E-value=2.8e+02 Score=29.42 Aligned_cols=91 Identities=16% Similarity=0.079 Sum_probs=55.4
Q ss_pred EEEEEeCCHHHHHHHHHHHh---hC-C-CEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 34 RILLCDNDSNSSDAVFSLLV---KC-S-YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~---~~-g-~eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
.|||=|.+-.+.-.+...+. +. . ..| +.+.+.+++.+.+.. .+|+|+||-.-|. +--++++.++
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe-~l~~av~~~~------ 247 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD-MMREAVRVTA------ 247 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHhhc------
Confidence 46666666544433434332 11 1 223 478899999999975 5999999944332 2222333332
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
.-.+|-.|+.-+.+.+.+-...|++-.
T Consensus 248 ~~~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 248 GRAVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 124667778888888888888887654
No 289
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=40.72 E-value=4.6e+02 Score=31.60 Aligned_cols=121 Identities=20% Similarity=0.235 Sum_probs=79.9
Q ss_pred CCCCcCCCCCcEEEEEeCCHHHHHHHHHHHhh----CCCEEE-EECCHHHHHHH----------------HHhcCCCceE
Q 008761 23 SGDGFIDRSKVRILLCDNDSNSSDAVFSLLVK----CSYQVT-SVRSPRQVIDA----------------LNAEGSDIDL 81 (554)
Q Consensus 23 ~~~~~~~mskirVLIVDDd~~~r~~L~~lL~~----~g~eV~-~A~dg~EALe~----------------L~~~~~~PDL 81 (554)
.|-+.++..++.|++..-++.....+...++. .|++|. .+.+|.|.++. +.. .-+|+
T Consensus 228 ~nlGvld~~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~T--GavD~ 305 (781)
T PRK00941 228 LGMGTIDKSKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRS--GIPDV 305 (781)
T ss_pred ccCcccCCCCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHHc--CCCcE
Confidence 34455677789999999999999999998763 367665 77777776533 122 36999
Q ss_pred EEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec----------CCCHHHHHHHHHcCC--CEEEeCCCCHHHHHHHHH
Q 008761 82 ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA----------QDEVSVVVKCLRLGA--ADYLVKPLRTNELLNLWT 149 (554)
Q Consensus 82 ILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs----------~~d~e~~~eAL~aGA--~DyL~KP~~~eeL~~~L~ 149 (554)
+++|.+=---+-.++.+. .++++|-+|. .++.+.+.+.|..|- --+|.-|...-++.-.+.
T Consensus 306 ~VvD~QCi~p~L~eiA~~-------ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a 378 (781)
T PRK00941 306 IVVDEQCVRTDILEEAKK-------LGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVA 378 (781)
T ss_pred EEEecccCcccHHHHHHH-------hCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHH
Confidence 999986433333333322 4568887773 456777777776665 445666766666655554
Q ss_pred HHH
Q 008761 150 HMW 152 (554)
Q Consensus 150 ~ll 152 (554)
..+
T Consensus 379 ~~~ 381 (781)
T PRK00941 379 KAV 381 (781)
T ss_pred HHH
Confidence 444
No 290
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.70 E-value=1.7e+02 Score=27.35 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=26.8
Q ss_pred CceEEEEecCCCCCcHH--------HHHHHHHhccCCCCceEEEEecCC
Q 008761 78 DIDLILAEVDLPMTKGL--------KMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 78 ~PDLILLDi~MP~mDGl--------ElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
+||+|++.+..-+.... .+++.|++.. +.+|||+++...
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~--p~~~iil~~~~~ 103 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETH--PDTPILLVSPRY 103 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHC--cCCCEEEEecCC
Confidence 79999998766654322 4566666643 678999988643
No 291
>PLN02775 Probable dihydrodipicolinate reductase
Probab=40.68 E-value=4.7e+02 Score=27.69 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=64.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE------------------------CCHHHHHHHHHhcCCCceEEEEec
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV------------------------RSPRQVIDALNAEGSDIDLILAEV 86 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A------------------------~dg~EALe~L~~~~~~PDLILLDi 86 (554)
+.++|+|..-.-.+-..+.+.+...+++++-+ .+.++++..++.. .||+|++|.
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~--~~~~VvIDF 87 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAE--YPNLIVVDY 87 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhcc--CCCEEEEEC
Confidence 35799999988888888877766566665421 4555666555444 699999999
Q ss_pred CCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHc-CCCEEEeCCCCH
Q 008761 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL-GAADYLVKPLRT 141 (554)
Q Consensus 87 ~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~a-GA~DyL~KP~~~ 141 (554)
..|..- .+.++...+ ..+|+|+=|.--+.+...+..+. +.--++.-.|+.
T Consensus 88 T~P~a~-~~~~~~~~~----~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 88 TLPDAV-NDNAELYCK----NGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred CChHHH-HHHHHHHHH----CCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 988732 334444443 45788877765444443333333 333344444554
No 292
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=40.42 E-value=3.4e+02 Score=29.41 Aligned_cols=68 Identities=25% Similarity=0.398 Sum_probs=50.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCE
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~MP~-------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~D 133 (554)
++.+.+++.+.... .+|.|++.-..|. .-|++.++.+.+. ..+||+.+.+- +.+.+.+.+.+||+.
T Consensus 246 S~Hs~~e~~~A~~~---GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~---~~iPv~AiGGI-~~~ni~~l~~~Ga~g 318 (347)
T PRK02615 246 STTNPEEMAKAIAE---GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKE---APIPWFAIGGI-DKSNIPEVLQAGAKR 318 (347)
T ss_pred ecCCHHHHHHHHHc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHcCCcE
Confidence 77788888777654 5899988654432 3478999998764 56899988765 467788899999988
Q ss_pred EE
Q 008761 134 YL 135 (554)
Q Consensus 134 yL 135 (554)
+-
T Consensus 319 VA 320 (347)
T PRK02615 319 VA 320 (347)
T ss_pred EE
Confidence 74
No 293
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=40.33 E-value=1.9e+02 Score=33.85 Aligned_cols=108 Identities=7% Similarity=0.038 Sum_probs=67.5
Q ss_pred CcEEEEEeCCHHH----HH-HHHHHHhhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCC--CCCcHHHHHHHHH
Q 008761 32 KVRILLCDNDSNS----SD-AVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDL--PMTKGLKMLKYIT 101 (554)
Q Consensus 32 kirVLIVDDd~~~----r~-~L~~lL~~~g~eV~---~A~dg~EALe~L~~~~~~PDLILLDi~M--P~mDGlElLr~Ir 101 (554)
.++|+++-=-+.. |. ....+|...||++. .+.+.+++.+...+. .++|+++-..= ..-.+-++++.|+
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~s--ga~i~viCssD~~Y~~~a~~~~~al~ 571 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKA--GAQVAVLCSSDKVYAQQGLEVAKALK 571 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhc--CCCEEEEeCCCcchHHHHHHHHHHHH
Confidence 4577776533322 22 23445566688877 346788888888765 56666654322 1234678899998
Q ss_pred hccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~ 147 (554)
+.. . ..|+|.+.... ..+...+|+++||.--.+.-+++..
T Consensus 572 ~ag---~-~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~ 611 (619)
T TIGR00642 572 AAG---A-KALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSS 611 (619)
T ss_pred hCC---C-CEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHH
Confidence 753 2 36777776543 3336789999999988776554443
No 294
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.11 E-value=1.4e+02 Score=31.32 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=57.8
Q ss_pred CcEEEEEe--CCHHHH---HHHHHHHhhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 32 KVRILLCD--NDSNSS---DAVFSLLVKCSYQVTSVRSPRQVIDA-------LNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 32 kirVLIVD--Dd~~~r---~~L~~lL~~~g~eV~~A~dg~EALe~-------L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
..+|+||- +.+... ..|...|.+.|++|.........+.. +......+|+|+. -|.|| .+|+.
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDG-T~L~a 79 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDG-NMLGA 79 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcH-HHHHH
Confidence 44577773 333333 44555666778888765443222210 0111114677776 26677 35555
Q ss_pred HHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 100 ITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 100 Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.+.... ..+|||=+-. |=.+||. .+..+++...+++++..
T Consensus 80 a~~~~~-~~~Pilgin~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 80 ARVLAR-YDIKVIGINR-------------GNLGFLT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred HHHhcC-CCCeEEEEEC-------------CCCCccc-ccCHHHHHHHHHHHHcC
Confidence 554321 3578875442 5566766 57778888888877653
No 295
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.86 E-value=81 Score=31.96 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCceEEEEec------CCCHHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 008761 107 QRIPVIMMSA------QDEVSVVVKCLRLGAADYLVKPLRTNELLN 146 (554)
Q Consensus 107 ~~iPIIVLSs------~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~ 146 (554)
-.+|||+++- +.....+..|-++||.+||.-.+.++|-..
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 5689999984 455667888999999999998888776543
No 296
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.68 E-value=3.6e+02 Score=27.83 Aligned_cols=98 Identities=6% Similarity=0.092 Sum_probs=60.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEE--EECCH-HHHHHHHHhcCCCceEEEE-ec-CCCC------CcHHHHHHHHHhc
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVT--SVRSP-RQVIDALNAEGSDIDLILA-EV-DLPM------TKGLKMLKYITRD 103 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~--~A~dg-~EALe~L~~~~~~PDLILL-Di-~MP~------mDGlElLr~Ir~~ 103 (554)
|||.|=...-...+...+.+.|+..+ ++.+. .+=++.+... .++.|-+ .+ ...+ .+..++++++++.
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~--s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASH--ASGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 55555555555566667777787544 33333 4445555554 4565543 22 1111 2345688888874
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
..+||++=.+-.+.+.+.+++.. |+..+.-.
T Consensus 199 ---~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 ---TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred ---CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 57899876666777888888875 99998765
No 297
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=39.67 E-value=1.5e+02 Score=31.49 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCC-cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 67 QVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 67 EALe~L~~~~~~PDLILLDi~MP~m-DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+-++.+.+. .+|+|.+|..-... .-++++++|++.. +.+||++ ..-...+.+..++++||+....
T Consensus 97 ~~~~~l~ea--gv~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 97 ERAEALVEA--GVDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 334444444 69999999854322 3478888888753 3466664 4446677889999999998764
No 298
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.38 E-value=2.8e+02 Score=26.58 Aligned_cols=82 Identities=15% Similarity=0.252 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-C-CHHH---HHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-R-SPRQ---VIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~-dg~E---ALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
++.+|||+.-...+...|...|.+.|++|... . +... ..+.+... ...+.+...++-+.+.+ .++..+...
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~- 80 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEK- 80 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH-
Confidence 34589999999899999998888889988755 3 3222 22223222 22344444444444443 344445432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
...+-+|+..+
T Consensus 81 -~~~id~vi~~a 91 (247)
T PRK05565 81 -FGKIDILVNNA 91 (247)
T ss_pred -hCCCCEEEECC
Confidence 23466666654
No 299
>PRK00811 spermidine synthase; Provisional
Probab=39.37 E-value=2.2e+02 Score=29.49 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=38.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC------CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKC------SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM 90 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~------g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~ 90 (554)
-+|.+||=++.+.+..++.|... .-.|. ...|+.+.+.. ...++|+||+|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 48999999999999998887532 12333 55677665544 2237999999986553
No 300
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=39.26 E-value=2.6e+02 Score=28.60 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=45.2
Q ss_pred HHHHHHHHhhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 45 SDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
...+.+.++..|.++.. ..+....+..+... .||+|++-. ..-++..+++.+++.. ...|+++...-
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~--~pdaV~~~~--~~~~a~~~~~~~~~~G--~~~~~~~~~~~ 223 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAA--GADAIITVL--DAAVCASVLKAVRAAG--LTPKVVLSGTC 223 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhc--CCCEEEEec--ChHHHHHHHHHHHHcC--CCCCEEEecCC
Confidence 34456667777765431 24566777777665 799998753 3336788999998865 45676655543
Q ss_pred CCHH
Q 008761 118 DEVS 121 (554)
Q Consensus 118 ~d~e 121 (554)
.+.+
T Consensus 224 ~~~~ 227 (341)
T cd06341 224 YDPA 227 (341)
T ss_pred CCHH
Confidence 4433
No 301
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.23 E-value=4.3e+02 Score=27.98 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 34 RILLCDNDSNSSDAVFSLLV----KCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~----~~g~--eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
.|||=|.+-.+.-.+...+. ..++ .| +.+.+.+++.+.+.. .+|+|+||-.-|. +--++++.++
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe-~l~~av~~~~----- 239 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE-QIEQAITLIA----- 239 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhc-----
Confidence 47777766555444444443 3342 23 377899999999975 4899999954332 2222333332
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
.-.+|-.|+.-+.+.+.+-...|++-.
T Consensus 240 -~~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 240 -GRSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred -CceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 124667777888888888888887655
No 302
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=39.17 E-value=3.9e+02 Score=28.94 Aligned_cols=110 Identities=12% Similarity=0.169 Sum_probs=65.0
Q ss_pred CcEEEEEeCCH-----HHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 32 KVRILLCDNDS-----NSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~-----~~r~~L~~lL~~~g~--eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
.++++||.+.. ...+.|.++....+. .|.... +-++..+.+. ..|+.+.- .....=|+.+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~----~adv~v~~-s~~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELS----TASIGLHT-MWNEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHH----hCeEEEEC-CccCCcccHHHHHHH-
Confidence 47888888642 345666666666554 344433 3566666664 35777653 223444788887765
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
..+|+|..........++.-...|..+||.. +.+++.+.+..++.
T Consensus 347 ----~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 ----AGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred ----cCCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 4567775432222222221111577888863 88899988888875
No 303
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=39.01 E-value=1.4e+02 Score=32.35 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCC-cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~m-DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
+..+-++.|.+. ..|+|++|..-... .-++++++|++.. +++||| .-.-...+.+...+++||+....=
T Consensus 108 ~~~er~~~L~~a--gvD~ivID~a~g~s~~~~~~ik~ik~~~--~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 108 DDFERAEALVEA--GVDVIVIDSAHGHSEHVIDMIKKIKKKF--PDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp CHHHHHHHHHHT--T-SEEEEE-SSTTSHHHHHHHHHHHHHS--TTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHc--CCCEEEccccCccHHHHHHHHHHHHHhC--CCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 455666666554 68999999865443 3578899998764 567766 444566778888999999887654
No 304
>PRK13566 anthranilate synthase; Provisional
Probab=38.97 E-value=96 Score=36.75 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=50.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec--CCCC-CcHHHHHHHHHhccCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV--DLPM-TKGLKMLKYITRDKELQ 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi--~MP~-mDGlElLr~Ir~~~~~~ 107 (554)
...+|||||-...+...|.+.|++.|++|........ .+.+... .||.||+-- .-|. ..-.++++.+.. .
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~~----~ 597 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAALA----R 597 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHHH----C
Confidence 3468999999988899999999999998876654321 2233323 689988721 1121 123455555543 4
Q ss_pred CceEEEEe
Q 008761 108 RIPVIMMS 115 (554)
Q Consensus 108 ~iPIIVLS 115 (554)
.+||+=+.
T Consensus 598 ~iPILGIC 605 (720)
T PRK13566 598 NLPIFGVC 605 (720)
T ss_pred CCcEEEEe
Confidence 58887555
No 305
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=38.78 E-value=3.2e+02 Score=27.72 Aligned_cols=114 Identities=11% Similarity=0.146 Sum_probs=73.3
Q ss_pred CcEEEEEeCCH----HHHHHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHH
Q 008761 32 KVRILLCDNDS----NSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYI 100 (554)
Q Consensus 32 kirVLIVDDd~----~~r~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~I 100 (554)
.+.+-|.|... .....+...|++.|+.+. -+.+|...+..+... +||+|=+|-.+- ......+++.|
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l--~~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRL--PPDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhC--CCCeEEECHHHHhhcccCcchHHHHHHH
Confidence 44555555332 133445566677787654 788999999999887 899999997443 23344566666
Q ss_pred HhccCCCCceEEEEecCCCHHHHHHHHHcCCCE----EEeCCCCHHHHHHHH
Q 008761 101 TRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD----YLVKPLRTNELLNLW 148 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~D----yL~KP~~~eeL~~~L 148 (554)
-.......+.|| .-+-...+....+.++|++- |+.||...+++...+
T Consensus 199 v~la~~l~~~vv-aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~ 249 (256)
T COG2200 199 VALAHKLGLTVV-AEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALL 249 (256)
T ss_pred HHHHHHCCCEEE-EeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHH
Confidence 554433445544 33445566677778888873 488999886665544
No 306
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=38.72 E-value=3.9e+02 Score=27.08 Aligned_cols=66 Identities=8% Similarity=0.030 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 46 DAVFSLLVKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~---A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
+.+...+++.|.++.. . .+....+..+... .||+|++-.. +.+.+.+++.+++.. ..+||+.++..
T Consensus 154 ~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~--~~dav~~~~~--~~~a~~~i~~~~~~G--~~~~~~~~~~~ 226 (336)
T cd06326 154 AGVEKALAARGLKPVATASYERNTADVAAAVAQLAAA--RPQAVIMVGA--YKAAAAFIRALRKAG--GGAQFYNLSFV 226 (336)
T ss_pred HHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhc--CCCEEEEEcC--cHHHHHHHHHHHhcC--CCCcEEEEecc
Confidence 3445555566654321 1 3555566666544 5787777542 235667777777654 34566655443
No 307
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=38.68 E-value=1.3e+02 Score=31.07 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=34.2
Q ss_pred CCcEEEEEe--------CCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecC
Q 008761 31 SKVRILLCD--------NDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVD 87 (554)
Q Consensus 31 skirVLIVD--------Dd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~ 87 (554)
++++|.|+= .+-.....+.+.|.+.||+|..+. ++.+.+..+... +||+|+.-++
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~--~~d~vf~~lh 65 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLEL--KPDKCFVALH 65 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhcc--CCCEEEEeCC
Confidence 456666653 222445567777777888877554 445556656544 6888887553
No 308
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=38.55 E-value=1.2e+02 Score=32.78 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=39.8
Q ss_pred CceEEEEecCCCCCc-HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 78 DIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 78 ~PDLILLDi~MP~mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
.+|+|++|+.-.-.. -++++++|++.. ++++| +...-...+.+...+.+||+..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~~--P~~~v-IaGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREAW--PDKTI-CAGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhC--CCCcE-EEecccCHHHHHHHHHcCCCEE
Confidence 689999999765443 478899998753 55553 3445566778888999999975
No 309
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=38.33 E-value=2e+02 Score=29.98 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=51.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcC----CCceEEEEecCCCCCcHHH-HHHHHHhc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEG----SDIDLILAEVDLPMTKGLK-MLKYITRD 103 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~----~~PDLILLDi~MP~mDGlE-lLr~Ir~~ 103 (554)
+++-++||-.-+.-+-..+.+.|.+.|+.|+ ++.+.+-..++.++.. ..++++-+|+. +.+.++ +...|+..
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs--~~~~~~~l~~~l~~~ 81 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLS--DPEALERLEDELKER 81 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCC--ChhHHHHHHHHHHhc
Confidence 4567899999999999999999999999988 5555443333322211 12455556654 445554 34456543
Q ss_pred cCCCCceEEEEec
Q 008761 104 KELQRIPVIMMSA 116 (554)
Q Consensus 104 ~~~~~iPIIVLSs 116 (554)
. ..+-|+|=.+
T Consensus 82 ~--~~IdvLVNNA 92 (265)
T COG0300 82 G--GPIDVLVNNA 92 (265)
T ss_pred C--CcccEEEECC
Confidence 2 3455555443
No 310
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.26 E-value=1.9e+02 Score=32.89 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=61.0
Q ss_pred CcEEEEEeCCHHH----HHHHHHHHhhCC--CEEE--EECCHHHHHHHHHhcCCCceEEEEec--------------CCC
Q 008761 32 KVRILLCDNDSNS----SDAVFSLLVKCS--YQVT--SVRSPRQVIDALNAEGSDIDLILAEV--------------DLP 89 (554)
Q Consensus 32 kirVLIVDDd~~~----r~~L~~lL~~~g--~eV~--~A~dg~EALe~L~~~~~~PDLILLDi--------------~MP 89 (554)
.+.+++||-.+.. .+.|+.+=...+ ..|. .+.+.+.|.+++.. ..|.|.+.+ -.|
T Consensus 254 Gvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a---GAd~I~vg~g~Gs~c~tr~~~~~g~~ 330 (502)
T PRK07107 254 GADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA---GADFVKVGIGGGSICITREQKGIGRG 330 (502)
T ss_pred CCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc---CCCEEEECCCCCcCcccccccCCCcc
Confidence 5778888755544 334444433333 3444 36678888888765 378886533 233
Q ss_pred CCcHHHHHHHHH-hc-cC-CCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 90 MTKGLKMLKYIT-RD-KE-LQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 90 ~mDGlElLr~Ir-~~-~~-~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..+.+.-+.... .. .. -..+|||.=.+-.....+.+||.+||+..+.
T Consensus 331 ~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 331 QATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 333322222211 10 00 1248999888888888999999999999865
No 311
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=38.21 E-value=4.5e+02 Score=26.79 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=80.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC----EEEEECCHHHHHHHHHhcCCCceEEEE----ecCCCCCcH-HHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY----QVTSVRSPRQVIDALNAEGSDIDLILA----EVDLPMTKG-LKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~----eV~~A~dg~EALe~L~~~~~~PDLILL----Di~MP~mDG-lElLr~Ir~ 102 (554)
-+.|+-+-+..++...+...=+ .|. +.+...+..++.+++.+. .||.+++ |.++-+.+- ++.+..+++
T Consensus 83 ~~tV~g~A~~~TI~~~i~~A~~-~~~~v~iDl~~~~~~~~~~~~l~~~--gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~ 159 (217)
T COG0269 83 WVTVLGAADDATIKKAIKVAKE-YGKEVQIDLIGVWDPEQRAKWLKEL--GVDQVILHRGRDAQAAGKSWGEDDLEKIKK 159 (217)
T ss_pred EEEEEecCCHHHHHHHHHHHHH-cCCeEEEEeecCCCHHHHHHHHHHh--CCCEEEEEecccHhhcCCCccHHHHHHHHH
Confidence 3688888888888777766543 343 233566889999999865 6999996 556666664 788888887
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHM 151 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~-----KP~~~eeL~~~L~~l 151 (554)
.. ...--|.+++--..+.+..+...|++-||. +--++.+-.+.+...
T Consensus 160 ~~--~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~ 211 (217)
T COG0269 160 LS--DLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEE 211 (217)
T ss_pred hh--ccCceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHH
Confidence 53 222467788888889999999999988864 444554444444443
No 312
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=38.20 E-value=1.5e+02 Score=29.50 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEecCC
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAEGSDIDLILAEVDL 88 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~--eV~-~A~dg~EALe~L~~~~~~PDLILLDi~M 88 (554)
.+..-++++||-+......|.+-+...+. ++. ...+...++..+... ..+|+|++|-=-
T Consensus 63 SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDPPy 124 (187)
T COG0742 63 SRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDPPY 124 (187)
T ss_pred hCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCCCC
Confidence 34467899999999999999998887762 333 445666776666543 149999999633
No 313
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=38.01 E-value=2e+02 Score=27.72 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=37.6
Q ss_pred HHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+.+.++..||.+.... +.. ++++.+... .+|.||+...-+. ..++++.+.. ..+|+|++..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~--~~~~~~~~~~----~~ipvV~~~~ 87 (266)
T cd06282 19 QGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQ--RVDGLILTVADAA--TSPALDLLDA----ERVPYVLAYN 87 (266)
T ss_pred HHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCC--chHHHHHHhh----CCCCEEEEec
Confidence 345555667788877543 222 445555544 7999998643332 2345666654 4689888754
No 314
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=37.96 E-value=2.4e+02 Score=31.62 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=46.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCC-------cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-------KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~MP~m-------DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~ 132 (554)
.+.+.+++...... .+|.|.+.-..|.. -|++.++++... ..+||+.+.+- +.+.+.+++..|++
T Consensus 396 S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~---~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 396 SCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEA---SKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc---CCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 66778777665443 58998864433321 278888888654 57899988664 46778899999998
No 315
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.91 E-value=4.3e+02 Score=26.46 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=62.1
Q ss_pred HHHHhhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEe--cCCCHHHHHH
Q 008761 49 FSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS--AQDEVSVVVK 125 (554)
Q Consensus 49 ~~lL~~~g~-eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLS--s~~d~e~~~e 125 (554)
...|...+. -|....+.++++..++... .--+=++.+.|-.-+.++.++.|++.. +.-|=+++. .-.+.+.+.+
T Consensus 7 ~~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~--~~~p~~~vGaGTV~~~~~~~~ 83 (213)
T PRK06552 7 LTKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELY--KDDPEVLIGAGTVLDAVTARL 83 (213)
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHc--CCCCCeEEeeeeCCCHHHHHH
Confidence 355666664 4567778888887776531 234446777777777999999998642 222223333 3567888999
Q ss_pred HHHcCCCEEEeCCCCHHHHHHH
Q 008761 126 CLRLGAADYLVKPLRTNELLNL 147 (554)
Q Consensus 126 AL~aGA~DyL~KP~~~eeL~~~ 147 (554)
|+++||. ||.-|.-..++.+.
T Consensus 84 a~~aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 84 AILAGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred HHHcCCC-EEECCCCCHHHHHH
Confidence 9999986 55567666666554
No 316
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.89 E-value=68 Score=29.75 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=42.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHH-----------HHHhcCCCceEEEEecCCCCC---------
Q 008761 34 RILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVID-----------ALNAEGSDIDLILAEVDLPMT--------- 91 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe-----------~L~~~~~~PDLILLDi~MP~m--------- 91 (554)
||+++.|+-.....+...|... +..|. ..-+|..+.. .+... +||+|++-+...+.
T Consensus 1 ~iv~~GDS~t~g~~~~~~l~~~l~~~v~N~g~~G~t~~~~~~~~~~~~~~~l~~~--~pd~Vii~~G~ND~~~~~~~~~~ 78 (189)
T cd01825 1 RIAQLGDSHIAGDFFTDVLRGLLGVIYDNLGVNGASASLLLKWDAEFLQAQLAAL--PPDLVILSYGTNEAFNKQLNASE 78 (189)
T ss_pred CeeEecCccccccchhhHHHhhhceEEecCccCchhhhhhhccCHHHHHHHHhhC--CCCEEEEECCCcccccCCCCHHH
Confidence 5677777776543334333322 55554 2223322211 23333 89999998865542
Q ss_pred --cHH-HHHHHHHhccCCCCceEEEEecC
Q 008761 92 --KGL-KMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 92 --DGl-ElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
.++ +++++|++.. +.++||+++..
T Consensus 79 ~~~~~~~li~~i~~~~--~~~~iv~~~~~ 105 (189)
T cd01825 79 YRQQLREFIKRLRQIL--PNASILLVGPP 105 (189)
T ss_pred HHHHHHHHHHHHHHHC--CCCeEEEEcCC
Confidence 112 3555565532 67888888864
No 317
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=37.81 E-value=4.5e+02 Score=26.72 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=39.8
Q ss_pred ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC---CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 008761 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ---DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWTHMWR 153 (554)
Q Consensus 79 PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~---~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~llr 153 (554)
.|++++. .+ +..+++.+. ..+|+|++... .......+.+..+-.+++..+-+ .++|.+.+..++.
T Consensus 251 ad~~v~~---~g--~~~l~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 251 ADLVISR---AG--ASTVAELAA-----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CCEEEEC---CC--hhHHHHHHH-----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 4666652 11 345556654 56799876421 12122234455566778776654 8999999988875
Q ss_pred HH
Q 008761 154 RR 155 (554)
Q Consensus 154 ~~ 155 (554)
..
T Consensus 321 ~~ 322 (348)
T TIGR01133 321 DP 322 (348)
T ss_pred CH
Confidence 43
No 318
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=37.78 E-value=2.9e+02 Score=27.02 Aligned_cols=80 Identities=11% Similarity=0.222 Sum_probs=47.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCCce
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRIP 110 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~iP 110 (554)
++|||+.-...+...+.+.|...|++|.. ..+...+-+.......+..++.+| +.+.+.+ ++++.+.+.. ..+-
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D--l~~~~~i~~~~~~~~~~~--~~id 76 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLD--VRNRAAIEEMLASLPAEW--RNID 76 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEec--CCCHHHHHHHHHHHHHHc--CCCC
Confidence 37899999999999999999888998874 445444333222221123444444 4444443 3555554432 3455
Q ss_pred EEEEec
Q 008761 111 VIMMSA 116 (554)
Q Consensus 111 IIVLSs 116 (554)
+|+..+
T Consensus 77 ~vi~~a 82 (248)
T PRK10538 77 VLVNNA 82 (248)
T ss_pred EEEECC
Confidence 665544
No 319
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.63 E-value=3e+02 Score=28.23 Aligned_cols=100 Identities=11% Similarity=0.121 Sum_probs=54.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEE--EEC-CHHHHHHHHHhcCCCceEEEEecC-CCCC------cHHHHHHHHHhcc
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVT--SVR-SPRQVIDALNAEGSDIDLILAEVD-LPMT------KGLKMLKYITRDK 104 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~--~A~-dg~EALe~L~~~~~~PDLILLDi~-MP~m------DGlElLr~Ir~~~ 104 (554)
|+|.|-.......+...+++.|...+ ++. +..+-++.+......+..++ -+. -.+. +-.+.++++++.
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~v-s~~G~TG~~~~~~~~~~~~i~~lr~~- 196 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLV-SRAGVTGARNRAASALNELVKRLKAY- 196 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEE-ECCCCCCCcccCChhHHHHHHHHHhh-
Confidence 34444443444556666677786533 222 33444444444321233332 221 1111 235667777754
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
..+||++=-+-.+.+.+.++.++||+.++.-.
T Consensus 197 --~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 197 --SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred --cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 45686653344558889999999999998864
No 320
>PRK06849 hypothetical protein; Provisional
Probab=37.54 E-value=3.5e+02 Score=28.90 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHH
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQV 68 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EA 68 (554)
.+.+|||...+......+.+.|.+.|++|+.+.+....
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~ 40 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP 40 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 46799999999877778888999899999866654433
No 321
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.50 E-value=4.5e+02 Score=27.73 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=56.2
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhCC--CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 34 RILLCDNDSNSSDAVFSLL----VKCS--YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL----~~~g--~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
.|||=|.+-.+.-.+...+ ...+ ..|. .+.+.+||.+.+.. .+|+|.+|-.-| .+--++++.|+...
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~-e~l~~av~~~~~~~-- 241 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPV-DLMQQAVQLIRQQN-- 241 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHHHhcC--
Confidence 4666665533332233333 2334 2343 78899999999865 599999993322 11122333343222
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
+++| |..++--+.+.+.+....|++-+-
T Consensus 242 ~~i~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 242 PRVK-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred CCeE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 4454 555666778888888899988764
No 322
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=37.43 E-value=1.5e+02 Score=33.71 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC-CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~-mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+-.+.|.+. ..|+|.+|..-.. ..-++++++|++.. +.++|| +..-...+.+..|+++||+....
T Consensus 248 ~~~~r~~~l~~a--g~d~i~iD~~~g~~~~~~~~i~~ik~~~--p~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVKA--GVDVVVLDSSQGDSIYQLEMIKYIKKTY--PELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHHc--CCCEEEEeCCCCCcHHHHHHHHHHHHhC--CCCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 334444444443 6999999994211 12358999998753 455554 34455677889999999998754
No 323
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=37.00 E-value=5.2e+02 Score=28.21 Aligned_cols=65 Identities=20% Similarity=0.384 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCC-------CCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDL-------PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~M-------P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
+..+..+.+.+. ..|+|+++-.. ...+-.++.+.++. .++|||+ ..-.+.+.+.++++.||+.++
T Consensus 143 ~~~e~a~~l~eA--Gad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~----~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 143 NAREIAPIVVKA--GADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE----LDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCCCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 455666666655 68999987322 22333344444432 4689886 556777889999999999987
No 324
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=36.98 E-value=60 Score=33.62 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=37.6
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQ------DEVSVVVKCLRLGAADYLVKPLRTNELL 145 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~------~d~e~~~eAL~aGA~DyL~KP~~~eeL~ 145 (554)
+.++++++|+... ..+|+|+||=. .-.....+|-++|++++|.-.+..++-.
T Consensus 73 ~~~~~~~~ir~~~--~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~ 130 (259)
T PF00290_consen 73 KIFELVKEIRKKE--PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESE 130 (259)
T ss_dssp HHHHHHHHHHHHC--TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHH
T ss_pred HHHHHHHHHhccC--CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHH
Confidence 4578888888433 78999999953 2334677788999999999877665543
No 325
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=36.91 E-value=1.6e+02 Score=29.52 Aligned_cols=84 Identities=19% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHhhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEec-CC--CCCcHHHHHHHHHhccCC--CCceEEEEecCCCHHHH
Q 008761 51 LLVKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEV-DL--PMTKGLKMLKYITRDKEL--QRIPVIMMSAQDEVSVV 123 (554)
Q Consensus 51 lL~~~g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi-~M--P~mDGlElLr~Ir~~~~~--~~iPIIVLSs~~d~e~~ 123 (554)
.|...|+.| ..+-+..+|+...... .+.|-.=+ +| -+.||+++++.+.+.... ..+. |+..+-.+...+
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~v 171 (213)
T TIGR00875 96 ILKKEGIKTNVTLVFSAAQALLAAKAG---ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE-VIAASVRHPRHV 171 (213)
T ss_pred HHHHCCCceeEEEecCHHHHHHHHHcC---CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE-EEEeccCCHHHH
Confidence 445555543 3445666666665542 44333211 11 146899988888764321 3455 556677788899
Q ss_pred HHHHHcCCCEEEeCC
Q 008761 124 VKCLRLGAADYLVKP 138 (554)
Q Consensus 124 ~eAL~aGA~DyL~KP 138 (554)
.+++.+|++-+-.-|
T Consensus 172 ~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 172 LEAALIGADIATMPL 186 (213)
T ss_pred HHHHHcCCCEEEcCH
Confidence 999999998886655
No 326
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=36.78 E-value=2.5e+02 Score=29.95 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=42.1
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHH
Q 008761 33 VRILLCDNDSNSS-----DAVFSLLVKCSYQVTSVR---------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLK 98 (554)
Q Consensus 33 irVLIVDDd~~~r-----~~L~~lL~~~g~eV~~A~---------dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr 98 (554)
-|+|||-|..... ..+...|...|.++..+. +..++.+.+++. ++|+||- +.|.+-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKF--NADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHH
Confidence 4899998876533 557778887777665443 255677777766 7998873 45666666665
Q ss_pred HH
Q 008761 99 YI 100 (554)
Q Consensus 99 ~I 100 (554)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 44
No 327
>PRK06138 short chain dehydrogenase; Provisional
Probab=36.75 E-value=3.7e+02 Score=25.93 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=48.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHh--cCCCceEEEEecCCCCCcHH-HHHHHHHhccCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNA--EGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~--~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~ 106 (554)
..-+|||..-+..+...|...|.+.|++|. ...+.+...+.... ......++.+|+ -+.+.+ ++++.+.+..
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~i~~~~-- 79 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDV--GSAEAVEALVDFVAARW-- 79 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCC--CCHHHHHHHHHHHHHHc--
Confidence 345899999999999999999888898877 44554433332221 111234444454 344443 4556665432
Q ss_pred CCceEEEEec
Q 008761 107 QRIPVIMMSA 116 (554)
Q Consensus 107 ~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 80 ~~id~vi~~a 89 (252)
T PRK06138 80 GRLDVLVNNA 89 (252)
T ss_pred CCCCEEEECC
Confidence 4455555543
No 328
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=36.67 E-value=4e+02 Score=27.45 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=48.4
Q ss_pred EEEEEeCCH----HHHHHHHHHHhh--CCCEEEE-------E-CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 34 RILLCDNDS----NSSDAVFSLLVK--CSYQVTS-------V-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 34 rVLIVDDd~----~~r~~L~~lL~~--~g~eV~~-------A-~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
+|.||.++. ...+.+...|++ .|.+|.. . .+....+..++.. .||+|++...-+ ++..+++.
T Consensus 145 ~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~--~~d~v~~~~~~~--~~~~~~~~ 220 (342)
T cd06329 145 KVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKAS--GADTVITGNWGN--DLLLLVKQ 220 (342)
T ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHc--CCCEEEEcccCc--hHHHHHHH
Confidence 455554333 244556677777 7776641 1 4555667777665 799999966433 67889999
Q ss_pred HHhccCCCCceEEEEe
Q 008761 100 ITRDKELQRIPVIMMS 115 (554)
Q Consensus 100 Ir~~~~~~~iPIIVLS 115 (554)
+++.. .+.+++..+
T Consensus 221 ~~~~g--~~~~~~~~~ 234 (342)
T cd06329 221 AADAG--LKLPFYTPY 234 (342)
T ss_pred HHHcC--CCceEEecc
Confidence 98865 355665444
No 329
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=36.59 E-value=4.5e+02 Score=26.31 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=66.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecC-CCCCcHHHHHHHHHhccCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVD-LPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~--dg~EALe~L~~~~~~PDLILLDi~-MP~mDGlElLr~Ir~~~~~ 106 (554)
.++++|+.+.+. ...+.+++...+. .|.... +..+..+.+. ..|++++-.. ....-|+.+++.+.
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~----~ad~~i~ps~~~~e~~g~~~~Ea~~----- 287 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLA----ACDVFVFPSVERSEAFGIVLLEAMA----- 287 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHH----hCCEEEeCCcccccccchHHHHHHH-----
Confidence 477888876653 4456666644432 344333 3444555554 2577775322 12344677887775
Q ss_pred CCceEEEEecCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLR-LGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~-aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
..+|||+--.....+ .+. .|...++..+.+.+++...+..++...
T Consensus 288 ~g~Pvi~~~~~~~~~----~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 288 FGKPVISTEIGTGGS----YVNLHGVTGLVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred cCCCEEecCCCCchh----HHhhCCCceEEeCCCCHHHHHHHHHHHHHCH
Confidence 457887532222222 233 478889999999999999999887644
No 330
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=36.36 E-value=2.2e+02 Score=27.61 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=35.6
Q ss_pred HHHHHHHHhhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEe
Q 008761 45 SDAVFSLLVKCSYQVTSVRS---PR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~d---g~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
...+.+.+++.||.+....+ .. +.++.+... .+|.||+--. ..-..+++.+.. ..+|+|++-
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~---~~~~~~~~~l~~----~~iPvv~~~ 85 (268)
T cd06273 18 IQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLER--GVDGLALIGL---DHSPALLDLLAR----RGVPYVATW 85 (268)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhc--CCCEEEEeCC---CCCHHHHHHHHh----CCCCEEEEc
Confidence 34455667778998775443 33 344555444 6888776322 112355566654 468888874
No 331
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=36.29 E-value=6e+02 Score=27.74 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=54.9
Q ss_pred cEEEEEeCC-HHHHHHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 33 VRILLCDND-SNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 33 irVLIVDDd-~~~r~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
++++|+.+- +...+.+..+....+..+. ..-+.+++...+. ..|++++--. -.--|+.+++.+. ..+
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~----~aDv~l~pS~-~E~~gl~~lEAma-----~G~ 390 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYA----GADFILMPSR-FEPCGLTQLYAMR-----YGT 390 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH----hCCEEEeCCC-cCCcHHHHHHHHH-----CCC
Confidence 566666554 2334445554444332232 1123333333333 2466665322 1334566665554 345
Q ss_pred eEEEEecCCCHHHHHHHHHcC------CCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLG------AADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aG------A~DyL~KP~~~eeL~~~L~~llr 153 (554)
|+|+ |...... +.+.-| ..+|+..|.+.++|...|..++.
T Consensus 391 pvI~-s~~gg~~---e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 391 VPIV-RRTGGLA---DTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred CeEE-ccCCCcc---ceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 5553 3322211 122233 77899999999999998888765
No 332
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=36.29 E-value=3.8e+02 Score=26.94 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=63.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
.++++||.+-+. ...+...+...+. .|....-.++..+.+. ..|++++--.. ..-|+.+++.+- ..+
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adi~v~ps~~-E~~~~~~lEAma-----~G~ 291 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQ----AMDVFLFPSLY-EGLPLVLIEAQA-----SGL 291 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHH----hcCEEEecccc-cCCCHHHHHHHH-----hCC
Confidence 567888876553 3445555554442 2333332334444443 35777764332 334677777765 467
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
|||+ |....... .+.. ...|+..+-+.+++.+.|..++.....
T Consensus 292 PvI~-s~~~~~~~---~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~ 334 (358)
T cd03812 292 PCIL-SDTITKEV---DLTD-LVKFLSLDESPEIWAEEILKLKSEDRR 334 (358)
T ss_pred CEEE-EcCCchhh---hhcc-CccEEeCCCCHHHHHHHHHHHHhCcch
Confidence 8875 44333322 2333 346777777789999999988775443
No 333
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.28 E-value=1.7e+02 Score=30.69 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=56.9
Q ss_pred EEEEEe--CCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHH-------------HHhcCCCceEEEEecCCCCCcHHH
Q 008761 34 RILLCD--NDSNS---SDAVFSLLVKCSYQVTSVRSPRQVIDA-------------LNAEGSDIDLILAEVDLPMTKGLK 95 (554)
Q Consensus 34 rVLIVD--Dd~~~---r~~L~~lL~~~g~eV~~A~dg~EALe~-------------L~~~~~~PDLILLDi~MP~mDGlE 95 (554)
+|.||- +.+.. ...|...|.+.|++|.........+.. .......+|+||+ -|.|| .
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG-T 76 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDG-T 76 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcH-H
Confidence 566662 33333 345566667788888765432222210 0111114677776 26677 3
Q ss_pred HHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 96 MLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 96 lLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+|+..+... ...+||+=+-. |-.+||. .+..+++...++++++.
T Consensus 77 ~L~aa~~~~-~~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 77 FLRTATYVG-NSNIPILGINT-------------GRLGFLA-TVSKEEIEETIDELLNG 120 (292)
T ss_pred HHHHHHHhc-CCCCCEEEEec-------------CCCCccc-ccCHHHHHHHHHHHHcC
Confidence 555555432 24688885543 4566776 57778888888887754
No 334
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.20 E-value=4.4e+02 Score=27.07 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=40.6
Q ss_pred HHHHHHHhhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+...+...|++|.. ..+....+..++.. .||+|++... .-+...+++.+++.. ...+++..+.
T Consensus 162 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~--~~d~v~~~~~--~~~~~~~~~~~~~~g--~~~~~~~~~~ 233 (344)
T cd06345 162 AGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAA--DPDVIIAGFS--GNVGVLFTQQWAEQK--VPIPTIGISV 233 (344)
T ss_pred HHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhc--CCCEEEEeec--CchHHHHHHHHHHcC--CCCceEEecC
Confidence 3345556666776552 23556677777665 7999998764 335777888887754 2456665543
No 335
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=36.14 E-value=3.2e+02 Score=28.31 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=53.4
Q ss_pred HHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC-CC--CCcHHHHHHHHHhccCCCCceEEEEecCCCHH
Q 008761 46 DAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD-LP--MTKGLKMLKYITRDKELQRIPVIMMSAQDEVS 121 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~-MP--~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e 121 (554)
..|...-...|.++. .+++.+|+...+.. .+++|=++-+ +. ..| ++...+|...-+ ..+-+|.-|+-.+.+
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~~---~a~iiGINnRdL~tf~vd-~~~~~~l~~~ip-~~~~~iseSGI~~~~ 222 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALEA---GADIIGINNRDLKTFEVD-LNRTEELAPLIP-KDVIVISESGIKTPE 222 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEESBCTTTCCBH-THHHHHHHCHSH-TTSEEEEESS-SSHH
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHHc---CCCEEEEeCccccCcccC-hHHHHHHHhhCc-cceeEEeecCCCCHH
Confidence 344444456798865 89999998888754 4787776543 22 223 334444443211 234555566778889
Q ss_pred HHHHHHHcCCCEEEeC
Q 008761 122 VVVKCLRLGAADYLVK 137 (554)
Q Consensus 122 ~~~eAL~aGA~DyL~K 137 (554)
.+.....+|++.+|.-
T Consensus 223 d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 223 DARRLARAGADAVLVG 238 (254)
T ss_dssp HHHHHCTTT-SEEEES
T ss_pred HHHHHHHCCCCEEEEC
Confidence 9999999999999874
No 336
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=36.08 E-value=3.1e+02 Score=24.44 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=42.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~-~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
++.+|.||.| +.....+ .-.|.++..+.+.+++.+.++.. ...+.+|++.-.+-..-. +.+.+++ ....
T Consensus 2 ~~~kIaVIGD-~dtv~GF----rLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~~i~-~~i~~~~----~~~~ 71 (104)
T PRK01395 2 TMYKIGVVGD-KDSILPF----KALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQIAADIP-ETIERYD----NQVL 71 (104)
T ss_pred cceeEEEEEC-HHHHHHH----HHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHHHHHhH-HHHHHhc----CCCC
Confidence 4568999998 4443332 23477777777777766665542 235777877544322111 2233332 2456
Q ss_pred eEEEEec
Q 008761 110 PVIMMSA 116 (554)
Q Consensus 110 PIIVLSs 116 (554)
|+|+.-.
T Consensus 72 P~Il~IP 78 (104)
T PRK01395 72 PAIILIP 78 (104)
T ss_pred CEEEEeC
Confidence 7776543
No 337
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=36.07 E-value=1.1e+02 Score=30.40 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=45.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec--CCCCCcHH--HHHHHHHhccCCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV--DLPMTKGL--KMLKYITRDKELQR 108 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi--~MP~mDGl--ElLr~Ir~~~~~~~ 108 (554)
++|||+|....+...+...|...|+++.........+......-..+|.||+-= ..|.-++. .+++++.. ..
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~----~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAA----AG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHh----CC
Confidence 489999998888888999999989877654432211111111001478777631 12322232 34554443 35
Q ss_pred ceEEEEe
Q 008761 109 IPVIMMS 115 (554)
Q Consensus 109 iPIIVLS 115 (554)
+||+=+.
T Consensus 77 ~PiLGIC 83 (214)
T PRK07765 77 TPLLGVC 83 (214)
T ss_pred CCEEEEc
Confidence 7887554
No 338
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=36.05 E-value=2.9e+02 Score=23.92 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=49.5
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEE-ecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 34 RILLCD--NDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA-EVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 34 rVLIVD--Dd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILL-Di~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+|+++. .+......+...|...|..+....+.......+.... .-|++|+ ...--..+-+++++.+++ ..++
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iS~~g~~~~~~~~~~~a~~----~g~~ 89 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLT-PGDVVIAISFSGETKETVEAAEIAKE----RGAK 89 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCC-CCCEEEEEeCCCCCHHHHHHHHHHHH----cCCe
Confidence 444444 4555666677777777887777777666555443322 2344433 333222345667777665 4689
Q ss_pred EEEEecCCCHH
Q 008761 111 VIMMSAQDEVS 121 (554)
Q Consensus 111 IIVLSs~~d~e 121 (554)
+|++|...+..
T Consensus 90 iv~iT~~~~~~ 100 (139)
T cd05013 90 VIAITDSANSP 100 (139)
T ss_pred EEEEcCCCCCh
Confidence 99999976643
No 339
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=36.02 E-value=4.6e+02 Score=26.23 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=62.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEE--CCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSV--RSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A--~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~Ir~ 102 (554)
.++++|+.+.+. ...+...+...+. .|... -+..+..+.+.. -|++++-..-+ +.-|..+++.+.
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a- 283 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA- 283 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH-
Confidence 455666654432 3344444444322 23322 234556666543 47766643321 223667777665
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
..+|||. +.... ..+.+..|..+++..+-+.+++.+.|..++...
T Consensus 284 ----~G~Pvi~-~~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 284 ----MGLPVIS-TDVSG---IPELVEDGETGLLVPPGDPEALADAIERLLDDP 328 (355)
T ss_pred ----cCCCEEe-cCCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 4678875 32222 234566677899999999999999888876543
No 340
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.99 E-value=2.1e+02 Score=29.26 Aligned_cols=68 Identities=24% Similarity=0.412 Sum_probs=48.4
Q ss_pred CHHHHHHHHHhcCCCc-eEEEEecCCCCC-c--HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHH-HcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDI-DLILAEVDLPMT-K--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL-RLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~P-DLILLDi~MP~m-D--GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL-~aGA~DyL~ 136 (554)
+..+.++.+.+. .. .+++.|+.--++ . -+++++++.+. ..+|||.-..-.+.+.+.+++ ..|++..+.
T Consensus 153 ~~~e~~~~~~~~--g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 153 DPLELAKEYEAL--GAGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CHHHHHHHHHHc--CCCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 355666766654 33 477777754322 2 36788888764 678999888888888999998 799988743
No 341
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=35.80 E-value=3.6e+02 Score=28.26 Aligned_cols=101 Identities=15% Similarity=0.214 Sum_probs=57.7
Q ss_pred EEEEEe--CCHHHH---HHHHHHHhhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 34 RILLCD--NDSNSS---DAVFSLLVKCSYQVTSVRSPRQVIDA-------LNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 34 rVLIVD--Dd~~~r---~~L~~lL~~~g~eV~~A~dg~EALe~-------L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
+|+||- +.+... ..+.+.|+..|+++....+....+.. .......+|+||+ -|.|| .+++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDG-t~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDG-TMLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcH-HHHHHHH
Confidence 477773 334444 44555566778887754432221110 0111124788886 26677 3555555
Q ss_pred hccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
... ...+||+=+. .|=..||. .+..+++...|.++++.
T Consensus 82 ~~~-~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 82 QLA-PYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred Hhc-CCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcC
Confidence 432 2567887544 35567888 67888888888887653
No 342
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.75 E-value=5.1e+02 Score=29.10 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=34.3
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEec
Q 008761 32 KVRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEG--SDIDLILAEV 86 (554)
Q Consensus 32 kirVLIVDDd~~---~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~--~~PDLILLDi 86 (554)
..+|++|+-|.. ..+.|...-...|+.+..+.+..+..+.+.... ...|+||+|.
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 468888887764 233444444455777776777666555553321 1489999997
No 343
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=35.56 E-value=1.5e+02 Score=30.88 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=50.5
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEec---C-----CCCCcHHHHHHHHHhccCCCCceEEEEec-CCCHHHHHHHHHcCCC
Q 008761 62 VRSPRQVIDALNAEGSDIDLILAEV---D-----LPMTKGLKMLKYITRDKELQRIPVIMMSA-QDEVSVVVKCLRLGAA 132 (554)
Q Consensus 62 A~dg~EALe~L~~~~~~PDLILLDi---~-----MP~mDGlElLr~Ir~~~~~~~iPIIVLSs-~~d~e~~~eAL~aGA~ 132 (554)
..+.++|.+.++.. .+|.+-+.+ + -|.. +++.|++|++. ..+|+++..+ -.+.+...++++.|+.
T Consensus 152 ~t~~eea~~f~~~t--gvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~---~~iPlv~hGgSGi~~e~i~~~i~~Gi~ 225 (282)
T TIGR01859 152 LADPDEAEQFVKET--GVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKEL---TNIPLVLHGASGIPEEQIKKAIKLGIA 225 (282)
T ss_pred cCCHHHHHHHHHHH--CcCEEeeccCccccccCCCCcc-CHHHHHHHHHH---hCCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 45899999998754 588887542 1 1333 58999999875 4689998873 3456678899999998
Q ss_pred EEEe
Q 008761 133 DYLV 136 (554)
Q Consensus 133 DyL~ 136 (554)
.+=.
T Consensus 226 kiNv 229 (282)
T TIGR01859 226 KINI 229 (282)
T ss_pred EEEE
Confidence 8743
No 344
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.50 E-value=3.9e+02 Score=32.14 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=58.5
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec--CCCCCc-HHHHHHHHHhccCC
Q 008761 33 VRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV--DLPMTK-GLKMLKYITRDKEL 106 (554)
Q Consensus 33 irVLIVDDd~~---~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi--~MP~mD-GlElLr~Ir~~~~~ 106 (554)
.+|.||+-|.. ..+.|..+-+..|..+..+.+..+..+.+.... ..|+||+|. .++... -.+.+..|... ..
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDTAGRs~~d~~l~eel~~l~~~-~~ 293 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDTVGMSQRDRNVSEQIAMLCGV-GR 293 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeCCCCCccCHHHHHHHHHHhcc-CC
Confidence 47888876653 224455444555666666778888777776543 679999997 223221 23444444321 12
Q ss_pred CCceEEEEecCCCHH---HHHHHHHc----CCCEEE-eC
Q 008761 107 QRIPVIMMSAQDEVS---VVVKCLRL----GAADYL-VK 137 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e---~~~eAL~a----GA~DyL-~K 137 (554)
+.-.++|+++....+ .+.+.++. +.+.+| +|
T Consensus 294 p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 294 PVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEec
Confidence 344566777654433 34455543 566764 44
No 345
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=35.44 E-value=4.9e+02 Score=26.41 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=64.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCC-C----CCcHHHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDL-P----MTKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~--dg~EALe~L~~~~~~PDLILLDi~M-P----~mDGlElLr~Ir~ 102 (554)
.++++||.+.+. ...+..++...|. .|.... +.++..+.+.. .|++++-... + ..-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 467777776543 3445555555432 343322 33555555543 4776653221 1 112667777765
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
..+|||.- .... ..+.+..|...++..|.+.++|.+.+..++...
T Consensus 293 ----~G~PvI~s-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 293 ----SGVPVVAT-RHGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLADP 337 (367)
T ss_pred ----cCCCEEEe-CCCC---chhheecCCeeEEECCCCHHHHHHHHHHHHcCH
Confidence 46788753 3222 234455677889999999999999998887643
No 346
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=35.41 E-value=3.1e+02 Score=26.34 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=46.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHH---HHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPR---QVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~---EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~ 106 (554)
..+|||..-...+...|...|.+.|+.|. ...+.. ...+.+... ..++.+...++-+.+.+ ++++.+....
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-- 81 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAALKAAVAAGVEDF-- 81 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh--
Confidence 45799999999999989888888899877 444533 233334332 23344444444444333 3444444321
Q ss_pred CCceEEEEec
Q 008761 107 QRIPVIMMSA 116 (554)
Q Consensus 107 ~~iPIIVLSs 116 (554)
..+.+|+..+
T Consensus 82 ~~~d~vi~~a 91 (251)
T PRK12826 82 GRLDILVANA 91 (251)
T ss_pred CCCCEEEECC
Confidence 3455665554
No 347
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.26 E-value=3.4e+02 Score=27.87 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 43 NSSDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 43 ~~r~~L~~lL~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.....+...+++.|++|.. ..+....+..++.. .||+|++... ..+...+++.+++.. ...+++
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~--~~d~vi~~~~--~~~~~~~~~~~~~~g--~~~~~~ 222 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNS--KPDLIVISAL--AADGGNLVRQLRELG--YNGLIV 222 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc--CCCEEEECCc--chhHHHHHHHHHHcC--CCCcee
Confidence 3445667777777877652 23556777777665 7999998764 346677888888764 234544
No 348
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=35.26 E-value=3.2e+02 Score=29.21 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=44.6
Q ss_pred EEECCHHHHHHHHH------hcCCCceEEEEecC--CCC---CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHH
Q 008761 60 TSVRSPRQVIDALN------AEGSDIDLILAEVD--LPM---TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (554)
Q Consensus 60 ~~A~dg~EALe~L~------~~~~~PDLILLDi~--MP~---mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~ 128 (554)
+.+.+.+++.+.+. . .+|+|+||-. -|. .+--++-+.+.... .. ..|-.|+.-+.+.+.+-..
T Consensus 208 VEv~tleea~ea~~~~~~~~a---gaDiImLDnm~~~~~~~~~~~e~l~~av~~~~--~~-~~lEaSGGIt~~ni~~yA~ 281 (308)
T PLN02716 208 VETRTLEEVKEVLEYLSDTKT---SLTRVMLDNMVVPLENGDVDVSMLKEAVELIN--GR-FETEASGNVTLDTVHKIGQ 281 (308)
T ss_pred EEECCHHHHHHHHHhcccccC---CCCEEEeCCCcccccccCCCHHHHHHHHHhhC--CC-ceEEEECCCCHHHHHHHHH
Confidence 47889999999987 4 5899999955 121 02223333332221 22 3477788888888888888
Q ss_pred cCCCEE
Q 008761 129 LGAADY 134 (554)
Q Consensus 129 aGA~Dy 134 (554)
.|++-.
T Consensus 282 tGVD~I 287 (308)
T PLN02716 282 TGVTYI 287 (308)
T ss_pred cCCCEE
Confidence 887654
No 349
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.23 E-value=3.5e+02 Score=28.59 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=32.7
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
++++++|++. ..+||++.....+.+.+.++++.|..|++
T Consensus 281 ~~~~~~ik~~---v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 281 LEFAEKIRKV---TKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 5777888875 47899988888889999999999988875
No 350
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=35.10 E-value=3.6e+02 Score=27.85 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=31.7
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEecC
Q 008761 32 KVRILLCDNDSN---SSDAVFSLLVKCSYQVTSVR---SP----RQVIDALNAEGSDIDLILAEVD 87 (554)
Q Consensus 32 kirVLIVDDd~~---~r~~L~~lL~~~g~eV~~A~---dg----~EALe~L~~~~~~PDLILLDi~ 87 (554)
..+|+|||-|.. ..+.|.......+..+.... +. .++++.+... .+|+||+|.-
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~--~~D~ViIDT~ 163 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR--NIDVVLIDTA 163 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC--CCCEEEEeCC
Confidence 468999997752 22445555566666555332 22 2334443333 6899999973
No 351
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.09 E-value=5.2e+02 Score=27.21 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=44.7
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 60 ~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
+.+.+.+++.+.+.. .+|+|+||-.-| -++-+.+.... ... +|..|+.-+.+.+.+-...|++-+
T Consensus 199 VEv~tleea~ea~~~---gaDiI~LDn~s~----e~l~~av~~~~--~~~-~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 199 VEVDTLDQLEEALEL---GVDAVLLDNMTP----DTLREAVAIVA--GRA-ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred EEeCCHHHHHHHHHc---CCCEEEeCCCCH----HHHHHHHHHhC--CCc-eEEEECCCCHHHHHHHHhcCCCEE
Confidence 478899999999865 599999995433 23333333221 223 377888888888888888887655
No 352
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=35.01 E-value=3.8e+02 Score=26.24 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=51.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CC--HHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RS--PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~d--g~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~ 106 (554)
..-+|||..-...+...+.+.|...|+.|..+ .+ .+++.+.+... ...+.++.+++-..+.+ .+++.+.+..
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~~-- 89 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVKEALEEF-- 89 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHc--
Confidence 34589999999999999999999999987644 33 23333444332 22344444444444444 3666665542
Q ss_pred CCceEEEEec
Q 008761 107 QRIPVIMMSA 116 (554)
Q Consensus 107 ~~iPIIVLSs 116 (554)
..+.+|+..+
T Consensus 90 g~id~li~~a 99 (258)
T PRK06935 90 GKIDILVNNA 99 (258)
T ss_pred CCCCEEEECC
Confidence 4567777665
No 353
>PHA03237 envelope glycoprotein M; Provisional
Probab=34.98 E-value=25 Score=38.93 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhhccCCCC
Q 008761 470 RREAALIKFRQKRKERCFDK 489 (554)
Q Consensus 470 ~r~~~~~r~~~k~~~r~~~k 489 (554)
=|.-|--.|++||.+|-|.+
T Consensus 345 vRlvRa~~yHr~~~t~fy~~ 364 (424)
T PHA03237 345 VRLVRACLYHRRRSTRFYGR 364 (424)
T ss_pred HHHHHHHHHHHHhhhHHHHH
Confidence 37777888888888876654
No 354
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=34.94 E-value=2.4e+02 Score=30.27 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 33 VRILLCDNDSNS----SDAVFSLLVKCSYQVTSVRS---------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 33 irVLIVDDd~~~----r~~L~~lL~~~g~eV~~A~d---------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
-+||||-|.... ...+...|+..|+++..+.. ..++++.+++. ++|+||- +.|..-+++.+.
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~d~IIa---iGGGS~~D~aK~ 101 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYREN--GCDAILA---VGGGSVIDCAKA 101 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCccHHHHHHH
Confidence 489999876543 24466677777776665432 46778887766 7998873 445555555544
Q ss_pred H
Q 008761 100 I 100 (554)
Q Consensus 100 I 100 (554)
+
T Consensus 102 i 102 (374)
T cd08189 102 I 102 (374)
T ss_pred H
Confidence 3
No 355
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=34.94 E-value=82 Score=32.21 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=35.1
Q ss_pred CCCcEEEEEe------C--CHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe
Q 008761 30 RSKVRILLCD------N--DSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAE 85 (554)
Q Consensus 30 mskirVLIVD------D--d~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLD 85 (554)
|++++|.|+- . +...-..+...|++.|++|.......+.++.+... .||+|+.=
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~--~~D~v~~~ 63 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKEL--GFDRVFNA 63 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccC--CCCEEEEe
Confidence 3456777765 1 11234567778888899888766555666666554 68888864
No 356
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=34.88 E-value=3.2e+02 Score=31.24 Aligned_cols=107 Identities=11% Similarity=0.177 Sum_probs=62.0
Q ss_pred CCCCCcEEEEE--eCCHHHHHH---HHHHHh-hCCCEEEEECCHHHHHH----------------HHHhcCCCceEEEEe
Q 008761 28 IDRSKVRILLC--DNDSNSSDA---VFSLLV-KCSYQVTSVRSPRQVID----------------ALNAEGSDIDLILAE 85 (554)
Q Consensus 28 ~~mskirVLIV--DDd~~~r~~---L~~lL~-~~g~eV~~A~dg~EALe----------------~L~~~~~~PDLILLD 85 (554)
|.+..-+|+|| -+.+...+. |...|. ..|++|.........+. .+......+|+||+
T Consensus 190 w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs- 268 (508)
T PLN02935 190 WESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT- 268 (508)
T ss_pred ecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE-
Confidence 66667788888 344444444 444454 46788776443222210 00001114677765
Q ss_pred cCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 86 VDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 86 i~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
-|.|| .+|+..+... ...+||+=| ..|=.+||. ++..+++...|..+++.
T Consensus 269 ---iGGDG-TlL~Aar~~~-~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 269 ---LGGDG-TVLWAASMFK-GPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKG 318 (508)
T ss_pred ---ECCcH-HHHHHHHHhc-cCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcC
Confidence 26677 3555554422 245788744 357788985 78889999888888764
No 357
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=34.59 E-value=95 Score=30.45 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=43.7
Q ss_pred EEEEEeCC---------HHHHHHHHHHHh-hCCCEEEEECCHHHHHH-HHHhcCCCceEEEEecCCCC-Cc--HHHHHHH
Q 008761 34 RILLCDND---------SNSSDAVFSLLV-KCSYQVTSVRSPRQVID-ALNAEGSDIDLILAEVDLPM-TK--GLKMLKY 99 (554)
Q Consensus 34 rVLIVDDd---------~~~r~~L~~lL~-~~g~eV~~A~dg~EALe-~L~~~~~~PDLILLDi~MP~-mD--GlElLr~ 99 (554)
||||+... +.....|..+|+ ..+|+|....+....-. .| . .+||||+...... ++ ..+.+..
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L--~--~~Dvvv~~~~~~~~l~~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL--K--GYDVVVFYNTGGDELTDEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH--C--T-SEEEEE-SSCCGS-HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh--c--CCCEEEEECCCCCcCCHHHHHHHHH
Confidence 67888776 257788899998 67899987776433212 23 2 6899999887752 33 2333333
Q ss_pred HHhccCCCCceEEEEe
Q 008761 100 ITRDKELQRIPVIMMS 115 (554)
Q Consensus 100 Ir~~~~~~~iPIIVLS 115 (554)
..+ ...++|.+=
T Consensus 77 ~v~----~Ggglv~lH 88 (217)
T PF06283_consen 77 YVE----NGGGLVGLH 88 (217)
T ss_dssp HHH----TT-EEEEEG
T ss_pred HHH----cCCCEEEEc
Confidence 333 346777774
No 358
>PLN02316 synthase/transferase
Probab=34.31 E-value=4.4e+02 Score=32.78 Aligned_cols=113 Identities=10% Similarity=0.066 Sum_probs=61.2
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHhhCCC----EEEEECCHHHHHH-HHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 32 KVRILLCDND--SNSSDAVFSLLVKCSY----QVTSVRSPRQVID-ALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 32 kirVLIVDDd--~~~r~~L~~lL~~~g~----eV~~A~dg~EALe-~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
.++++||.+- +.....|..+....+. .|.......+.+. .+-. ..|++++=- +-.--|+..|+.++
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya---aADiflmPS-~~EP~GLvqLEAMa--- 941 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA---GADFILVPS-IFEPCGLTQLTAMR--- 941 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH---hCcEEEeCC-cccCccHHHHHHHH---
Confidence 4667777753 3334445555443321 3332222233321 2222 358777642 33456888888776
Q ss_pred CCCCceEEEEecCCC-HHHHHHH---------HHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDE-VSVVVKC---------LRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d-~e~~~eA---------L~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
..+|+|+ +.... .+.+... -..|..+|+..|.+.+.|...|.+++..
T Consensus 942 --~GtppVv-s~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 942 --YGSIPVV-RKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred --cCCCeEE-EcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 3445554 44333 2222221 1125789999999999998888887653
No 359
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=34.26 E-value=3.1e+02 Score=23.81 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=17.1
Q ss_pred EEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008761 37 LCDNDSNSSDAVFSLLVKCSYQVTSVR 63 (554)
Q Consensus 37 IVDDd~~~r~~L~~lL~~~g~eV~~A~ 63 (554)
+-|.+......+...|...||.+....
T Consensus 7 ~~~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 7 VADRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred EEcCcHhHHHHHHHHHHHCCCEEEEch
Confidence 334455455566677777899887544
No 360
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=34.25 E-value=2.4e+02 Score=30.28 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=41.0
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 33 VRILLCDNDSN----SSDAVFSLLVKCSYQVTSVR---------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 33 irVLIVDDd~~----~r~~L~~lL~~~g~eV~~A~---------dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
-|+|||-|... ..+.+...|...|+++..+. +..++++.++.. .+|+||- +.+.+-+++.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEG--GCDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 38999987644 23457777877777665443 256677777665 7998873 456566666655
Q ss_pred H
Q 008761 100 I 100 (554)
Q Consensus 100 I 100 (554)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 5
No 361
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=34.17 E-value=1e+02 Score=28.38 Aligned_cols=80 Identities=9% Similarity=0.065 Sum_probs=43.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC---CHHHHHHHHHh--cCCCceEEEEecCCCCCc----------HH-HH
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVT-SVR---SPRQVIDALNA--EGSDIDLILAEVDLPMTK----------GL-KM 96 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~---dg~EALe~L~~--~~~~PDLILLDi~MP~mD----------Gl-El 96 (554)
+||++.|+-...-...... ..+++|. ..- +..++++.+.. ...+||+|++-+-.-+.. .+ .+
T Consensus 2 ~iv~~GdS~t~~~~~~~~~-~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l 80 (174)
T cd01841 2 NIVFIGDSLFEGWPLYEAE-GKGKTVNNLGIAGISSRQYLEHIEPQLIQKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDI 80 (174)
T ss_pred CEEEEcchhhhcCchhhhc-cCCCeEEecccccccHHHHHHHHHHHHHhcCCCEEEEEeccccCCCCCCHHHHHHHHHHH
Confidence 5888888877654443332 2345554 222 33344444311 123799999876554431 11 35
Q ss_pred HHHHHhccCCCCceEEEEec
Q 008761 97 LKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 97 Lr~Ir~~~~~~~iPIIVLSs 116 (554)
++.+++.. +.++||+++-
T Consensus 81 ~~~~~~~~--p~~~vi~~~~ 98 (174)
T cd01841 81 IEQIREEF--PNTKIYLLSV 98 (174)
T ss_pred HHHHHHHC--CCCEEEEEee
Confidence 55555432 5678888774
No 362
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=34.02 E-value=3e+02 Score=26.97 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDID-LILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PD-LILLDi~MP~m---DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+.++.+... ..+ ++++|+..-++ -.+++++++.+. ..+|||.-..-.+.+.+.++++.||+.++.
T Consensus 147 ~~~~~~~~~~~~--ga~~iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEEL--GVKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 445556656544 344 45566643322 236888888764 578999888888888888999999999865
No 363
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=33.95 E-value=57 Score=31.49 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=26.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR 63 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~ 63 (554)
+||||||....+-..|.+.|+..|+++.+..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 5899999888888889999999998766554
No 364
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.93 E-value=3.3e+02 Score=28.62 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=56.7
Q ss_pred EEEEEe--CCHH---HHHHHHHHHhhCCCEEEEECCHHHHHH-----H--HHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 34 RILLCD--NDSN---SSDAVFSLLVKCSYQVTSVRSPRQVID-----A--LNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 34 rVLIVD--Dd~~---~r~~L~~lL~~~g~eV~~A~dg~EALe-----~--L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
+|+||- +.+. ..+.+...|.+.++++.......+.+. . .......+|+||+ -|.||. +++.++
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 80 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LLGAAR 80 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HHHHHH
Confidence 577773 3333 344566667778888776543222111 0 0111114777776 266772 334443
Q ss_pred hccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
... ...+||+-+-. |=..||. .+..+++...|..+++.
T Consensus 81 ~~~-~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 81 ALA-RHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred Hhc-CCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcC
Confidence 321 25788886553 5566774 67888888888887653
No 365
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.91 E-value=27 Score=31.74 Aligned_cols=75 Identities=9% Similarity=0.062 Sum_probs=37.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHH-HHHHhcCCCceEEEEecCCCCC----c------H-HHHHHHH
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVI-DALNAEGSDIDLILAEVDLPMT----K------G-LKMLKYI 100 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EAL-e~L~~~~~~PDLILLDi~MP~m----D------G-lElLr~I 100 (554)
++||+|.|+-..- . ....|+.=.++.+..+.+ +.+... +||+|++-+-..+. + . -++++.|
T Consensus 1 ~~~~~~Gds~~~g----~-~~n~g~~G~~~~~~~~~~~~~~~~~--~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i 73 (157)
T cd01833 1 LRIMPLGDSITWG----D-KDHEGHSGYLIDQIAAAAADWVLAA--KPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQM 73 (157)
T ss_pred CceeecCCceeec----C-CCCCCCCCccHHHHHHHhhhccccC--CCCEEEEeccCcccccCCCHHHHHHHHHHHHHHH
Confidence 4677888776554 0 001122111222333333 333333 89999995543332 1 1 2466666
Q ss_pred HhccCCCCceEEEEec
Q 008761 101 TRDKELQRIPVIMMSA 116 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs 116 (554)
+... +.++||+++-
T Consensus 74 ~~~~--p~~~ii~~~~ 87 (157)
T cd01833 74 RAAN--PDVKIIVATL 87 (157)
T ss_pred HHhC--CCeEEEEEeC
Confidence 6543 5677776654
No 366
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=33.84 E-value=3.6e+02 Score=29.28 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCceEEEEe-cCC----CCC--cHHHHHHHHHhccCCCCceEEEEecC-CC-----HHHHHHHHHcCCC
Q 008761 66 RQVIDALNAEGSDIDLILAE-VDL----PMT--KGLKMLKYITRDKELQRIPVIMMSAQ-DE-----VSVVVKCLRLGAA 132 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLD-i~M----P~m--DGlElLr~Ir~~~~~~~iPIIVLSs~-~d-----~e~~~eAL~aGA~ 132 (554)
..|++.+...+ ..+|+||. ... ++. =-+..+..|++. .++||++=+++ .. ......|+.+||+
T Consensus 242 ~~Ave~i~~~G-n~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~---~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAd 317 (360)
T PRK12595 242 IYAAEYIMSQG-NGQIILCERGIRTYEKATRNTLDISAVPILKQE---THLPVMVDVTHSTGRRDLLLPTAKAALAIGAD 317 (360)
T ss_pred HHHHHHHHHCC-CCCEEEECCccCCCCCCCCCCcCHHHHHHHHHH---hCCCEEEeCCCCCcchhhHHHHHHHHHHcCCC
Confidence 45677776543 57899997 211 111 134455555553 46897772444 32 2256678999998
Q ss_pred E-EEeCCC
Q 008761 133 D-YLVKPL 139 (554)
Q Consensus 133 D-yL~KP~ 139 (554)
+ +|.|-+
T Consensus 318 g~~iE~H~ 325 (360)
T PRK12595 318 GVMAEVHP 325 (360)
T ss_pred eEEEEecC
Confidence 5 466543
No 367
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=33.80 E-value=1.3e+02 Score=30.82 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=57.1
Q ss_pred HHHHHHHhhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCC-CCcH-HHHHHHHHhccCCCCceEEEEecC--C
Q 008761 46 DAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLP-MTKG-LKMLKYITRDKELQRIPVIMMSAQ--D 118 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~---dg~EALe~L~~~~~~PDLILLDi~MP-~mDG-lElLr~Ir~~~~~~~iPIIVLSs~--~ 118 (554)
..+..+|+..||+|+-.. ..++.++..+++ +||+|-+-..|- -|-+ .++++.|++.. -.-+|+++.+- -
T Consensus 122 ~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~--k~d~v~~SalMTttm~~~~~viE~L~eeG--iRd~v~v~vGGApv 197 (227)
T COG5012 122 NIVATMLEAAGFEVIDLGRDVPVEEFVEKAKEL--KPDLVSMSALMTTTMIGMKDVIELLKEEG--IRDKVIVMVGGAPV 197 (227)
T ss_pred HHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHc--CCcEEechHHHHHHHHHHHHHHHHHHHcC--CccCeEEeecCccc
Confidence 345667788899988333 478888988887 899999887665 3444 35677777765 44567766432 3
Q ss_pred CHHHHHHHHHcCCCEEEeCC
Q 008761 119 EVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 119 d~e~~~eAL~aGA~DyL~KP 138 (554)
+.+ -+-+.||+.|-.-+
T Consensus 198 tq~---~a~~iGAD~~~~dA 214 (227)
T COG5012 198 TQD---WADKIGADAYAEDA 214 (227)
T ss_pred cHH---HHHHhCCCccCcCH
Confidence 333 24567888886543
No 368
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=33.62 E-value=4.3e+02 Score=25.17 Aligned_cols=83 Identities=10% Similarity=0.113 Sum_probs=47.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHH----HHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQ----VIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRD 103 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~E----ALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~ 103 (554)
+...+|||..-+..+...|.+.|.+.|+.|+ ...+... ..+.+... ...+.++..++-+.+.+ ++++.+...
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999998888899885 4333332 22233322 23444444444444443 344555432
Q ss_pred cCCCCceEEEEec
Q 008761 104 KELQRIPVIMMSA 116 (554)
Q Consensus 104 ~~~~~iPIIVLSs 116 (554)
...+-+|+..+
T Consensus 81 --~~~id~vi~~a 91 (248)
T PRK05557 81 --FGGVDILVNNA 91 (248)
T ss_pred --cCCCCEEEECC
Confidence 23455666554
No 369
>PRK04457 spermidine synthase; Provisional
Probab=33.60 E-value=3.4e+02 Score=27.72 Aligned_cols=69 Identities=7% Similarity=-0.085 Sum_probs=45.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC--CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-----CcHHHHHHHHHhc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCS--YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-----TKGLKMLKYITRD 103 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g--~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~-----mDGlElLr~Ir~~ 103 (554)
..+|..||=++.+.+..++.+...+ -.|. ...|+.+.+.... ..+|+|++|..-.. +.-.++++.+++.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~---~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~ 166 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR---HSTDVILVDGFDGEGIIDALCTQPFFDDCRNA 166 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC---CCCCEEEEeCCCCCCCccccCcHHHHHHHHHh
Confidence 5789999999999998888775332 2333 4567777765432 36999999963221 1224666666553
No 370
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.60 E-value=2.5e+02 Score=28.15 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCcHHHHHHHHHhccCCCCceEEEEecCC
Q 008761 41 DSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 41 d~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mDGlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
+|.+...+.+.....+.-+. -+.+..|+.+.+.. ..|+|-+ .| +.-|.+.++.|+.. ++++|++. ++--
T Consensus 94 sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~---Gad~vkl---FPa~~~G~~~ik~l~~~--~p~ip~~a-tGGI 164 (213)
T PRK06552 94 SPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEA---GSEIVKL---FPGSTLGPSFIKAIKGP--LPQVNVMV-TGGV 164 (213)
T ss_pred CCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHc---CCCEEEE---CCcccCCHHHHHHHhhh--CCCCEEEE-ECCC
Confidence 44444555555556666555 67789999888754 5898887 33 44578999999864 47789774 4555
Q ss_pred CHHHHHHHHHcCCCEE
Q 008761 119 EVSVVVKCLRLGAADY 134 (554)
Q Consensus 119 d~e~~~eAL~aGA~Dy 134 (554)
+.+.+.+.+.+|++.+
T Consensus 165 ~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 165 NLDNVKDWFAAGADAV 180 (213)
T ss_pred CHHHHHHHHHCCCcEE
Confidence 6788999999998876
No 371
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=33.59 E-value=2.6e+02 Score=27.03 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTSVRS------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~d------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+.+.++..||.+..+.. ..++++.+... .+|-||+.-..+. .+++..+.. ..+|||++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~---~~~~~~~~~----~~ipvv~~~~ 86 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSR--RPAGLILTGLEHT---ERTRQLLRA----AGIPVVEIMD 86 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHc--CCCEEEEeCCCCC---HHHHHHHHh----cCCCEEEEec
Confidence 4455566777898775432 24556666555 7898887543322 345555554 4679988743
No 372
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.58 E-value=8.3e+02 Score=28.48 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=63.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
.++++||.|-+ .+..|...+...|. .|.......+..+++. ..|+.++--. -+.-|+.+++.+. ..+
T Consensus 429 dirLvIVGdG~-~~eeLk~la~elgL~d~V~FlG~~~Dv~~~La----aADVfVlPS~-~EGfp~vlLEAMA-----~Gl 497 (578)
T PRK15490 429 ATRFVLVGDGD-LRAEAQKRAEQLGILERILFVGASRDVGYWLQ----KMNVFILFSR-YEGLPNVLIEAQM-----VGV 497 (578)
T ss_pred CeEEEEEeCch-hHHHHHHHHHHcCCCCcEEECCChhhHHHHHH----hCCEEEEccc-ccCccHHHHHHHH-----hCC
Confidence 46788888765 35567777766654 3555554445555554 3588876332 2445677777765 467
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLW 148 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L 148 (554)
|||.. .... ..+.+..|..+|+..|.+...|...+
T Consensus 498 PVVAT-dvGG---~~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 498 PVIST-PAGG---SAECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred CEEEe-CCCC---cHHHcccCCcEEEECCCChhhHHHHH
Confidence 98843 3332 23456689999999998765554433
No 373
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=33.58 E-value=2.3e+02 Score=28.70 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCcHHHHHHHHHhccCC-CCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 90 MTKGLKMLKYITRDKEL-QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 90 ~mDGlElLr~Ir~~~~~-~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
+.||.++++.|...-.. ..-.-|+..+..+...+.+++.+||+-+-.-|
T Consensus 141 g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~ 190 (222)
T PRK12656 141 NIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAGP 190 (222)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecCH
Confidence 56898888776553211 12234556677888899999999988776544
No 374
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.42 E-value=2.4e+02 Score=26.54 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=29.6
Q ss_pred EEEEEeCCHHHHH--HHHHHHhh-CCCEEEEEC---CH----------HHHHHHHHhcCCCceEEEEecCCCC
Q 008761 34 RILLCDNDSNSSD--AVFSLLVK-CSYQVTSVR---SP----------RQVIDALNAEGSDIDLILAEVDLPM 90 (554)
Q Consensus 34 rVLIVDDd~~~r~--~L~~lL~~-~g~eV~~A~---dg----------~EALe~L~~~~~~PDLILLDi~MP~ 90 (554)
|||++.|+-...- .+...|.. .+++|.... ++ ....+.+... +||+|++-+..-+
T Consensus 1 ril~iGDS~~~g~~~~l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~~~--~pd~vii~~G~ND 71 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIAEE--KPDVVVVFLGAND 71 (200)
T ss_pred CEEEEechHHHHHHHHHHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHHhcC--CCCEEEEEecCCC
Confidence 5899999976542 23334432 355554211 12 1222334434 8999999865543
No 375
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=33.39 E-value=2.7e+02 Score=25.43 Aligned_cols=82 Identities=9% Similarity=0.008 Sum_probs=46.8
Q ss_pred EEEEeCCHHHH--HHHHHHHhhCCCEEEEECCHHHHHHHHHh---cCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 35 ILLCDNDSNSS--DAVFSLLVKCSYQVTSVRSPRQVIDALNA---EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 35 VLIVDDd~~~r--~~L~~lL~~~g~eV~~A~dg~EALe~L~~---~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|+++.|+-... ..|.+.+-..-..-....+...+++.+.. ....||+|++-+.--+..-.+-+++|.+.. .+..
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~-~~~~ 80 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFPNIQIDAKVGRQMSEAPDLIRQLKDSGKLRKTVVIGLGTNGPFTKDQLDELLDAL-GPDR 80 (150)
T ss_pred eeEEeehHHHchHHHHHHHCCCCEEEeeecccHHHHHHHHHHHHHcCCCCCeEEEEecCCCCCCHHHHHHHHHHc-CCCC
Confidence 68888886665 23333332221222244566677776642 223689999887666654445555555433 1347
Q ss_pred eEEEEecC
Q 008761 110 PVIMMSAQ 117 (554)
Q Consensus 110 PIIVLSs~ 117 (554)
+||+++..
T Consensus 81 ~ivlv~~~ 88 (150)
T cd01840 81 QVYLVNPH 88 (150)
T ss_pred EEEEEECC
Confidence 88887765
No 376
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=33.26 E-value=2.5e+02 Score=30.16 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=41.5
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 33 VRILLCDNDSNS----SDAVFSLLVKCSYQVTSVRS---------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 33 irVLIVDDd~~~----r~~L~~lL~~~g~eV~~A~d---------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
-++|||-|.... ...+...|+..|.++..+.. .+++++.++.. .+|+||- +.+.+-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKE--GCDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcHHHHHHHH
Confidence 489999876543 34577788777776665532 45677777665 7998883 456566666665
Q ss_pred H
Q 008761 100 I 100 (554)
Q Consensus 100 I 100 (554)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 5
No 377
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=33.18 E-value=65 Score=31.61 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCc-------HHHHHHHHHhccCCCCceEEEEecC
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPMTK-------GLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~mD-------GlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
.+..+.|.+. .+|++++|+... ++ -..+++.|++.+ +.+|||+++..
T Consensus 49 ~~~a~~ia~~--~a~~~~ld~~~N-~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~~~ 102 (178)
T PF14606_consen 49 PEVADLIAEI--DADLIVLDCGPN-MSPEEFRERLDGFVKTIREAH--PDTPILLVSPI 102 (178)
T ss_dssp HHHHHHHHHS----SEEEEEESHH-CCTTTHHHHHHHHHHHHHTT---SSS-EEEEE--
T ss_pred HHHHHHHhcC--CCCEEEEEeecC-CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEecC
Confidence 4556666665 789999998542 22 345788888764 88999999953
No 378
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=33.18 E-value=5.6e+02 Score=26.40 Aligned_cols=108 Identities=16% Similarity=0.267 Sum_probs=62.5
Q ss_pred cEEEEEeC---CHHHHHHHHHHHhhCCC---EEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhc
Q 008761 33 VRILLCDN---DSNSSDAVFSLLVKCSY---QVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (554)
Q Consensus 33 irVLIVDD---d~~~r~~L~~lL~~~g~---eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~ 103 (554)
.+++|+.+ .......+...+...+. .|... -+..+..+.+. ..|++++=.. .+.-|+.+++.+.
T Consensus 230 ~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~aDv~v~ps~-~e~~g~~~lEA~a-- 302 (388)
T TIGR02149 230 VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS----NAEVFVCPSI-YEPLGIVNLEAMA-- 302 (388)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH----hCCEEEeCCc-cCCCChHHHHHHH--
Confidence 45555533 23334455555544332 13322 24555666664 3587776332 2344677777765
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCH------HHHHHHHHHHHHH
Q 008761 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRT------NELLNLWTHMWRR 154 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~------eeL~~~L~~llr~ 154 (554)
..+|||+ |.... ..+.+..|..+++.++-+. ++|...|..++..
T Consensus 303 ---~G~PvI~-s~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 303 ---CGTPVVA-SATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD 352 (388)
T ss_pred ---cCCCEEE-eCCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC
Confidence 5678875 33332 3455667888999998877 7888888877653
No 379
>PRK10060 RNase II stability modulator; Provisional
Probab=33.16 E-value=3.2e+02 Score=31.62 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=69.4
Q ss_pred HHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC----C-CCcHHHHHHHHHhccCCCCceEEEEecCC
Q 008761 46 DAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL----P-MTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~M----P-~mDGlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
..+...|++.|+.+. -+.++...+..|... ++|.|=+|-.+ . ......+++.|-.......+.|| ..+-.
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l--~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVE 620 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLARF--PIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVE 620 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHhC--CCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCC
Confidence 345566778898876 467888999999877 89999999633 2 22345566666443322445544 45566
Q ss_pred CHHHHHHHHHcCCCE----EEeCCCCHHHHHHHHHH
Q 008761 119 EVSVVVKCLRLGAAD----YLVKPLRTNELLNLWTH 150 (554)
Q Consensus 119 d~e~~~eAL~aGA~D----yL~KP~~~eeL~~~L~~ 150 (554)
+.+....+..+|++- |+.||...+++...++.
T Consensus 621 t~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 621 TAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 677777788889864 48899999888776543
No 380
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=33.16 E-value=2.5e+02 Score=27.53 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=35.8
Q ss_pred HHHHHHHHhhCCCEEEEEC-C---HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 45 SDAVFSLLVKCSYQVTSVR-S---PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~-d---g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
.+.+.+.++..||.+..+. + -....+.+... ++|-||+.-.. .+ ...++++.. ..+|||++..
T Consensus 29 ~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~--~~dgiii~~~~--~~-~~~~~~~~~----~~ipvV~~~~ 95 (275)
T cd06295 29 LGGIADALAERGYDLLLSFVSSPDRDWLARYLASG--RADGVILIGQH--DQ-DPLPERLAE----TGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhC--CCCEEEEeCCC--CC-hHHHHHHHh----CCCCEEEECC
Confidence 3446666777898866432 2 22344555444 79977763211 11 244566654 4689998854
No 381
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.14 E-value=1.6e+02 Score=30.54 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCceEEEEe-c----C-----CCCCcHHHHHHHHHhccCCCCceEEE-EecCCCH------HHHHHHHH
Q 008761 66 RQVIDALNAEGSDIDLILAE-V----D-----LPMTKGLKMLKYITRDKELQRIPVIM-MSAQDEV------SVVVKCLR 128 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLD-i----~-----MP~mDGlElLr~Ir~~~~~~~iPIIV-LSs~~d~------e~~~eAL~ 128 (554)
..|++.+...+ ..+|+||. . . ..++..+..++ +. .++|||+ .| +... .....|+.
T Consensus 139 ~~A~e~i~~~G-n~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk---~~---~~lPVivd~S-Hs~G~r~~v~~~a~AAvA 210 (250)
T PRK13397 139 LGALSYLQDTG-KSNIILCERGVRGYDVETRNMLDIMAVPIIQ---QK---TDLPIIVDVS-HSTGRRDLLLPAAKIAKA 210 (250)
T ss_pred HHHHHHHHHcC-CCeEEEEccccCCCCCccccccCHHHHHHHH---HH---hCCCeEECCC-CCCcccchHHHHHHHHHH
Confidence 55677776543 57999997 2 1 22334444443 32 4679998 66 4332 67888999
Q ss_pred cCCCEE-EeCCCCH
Q 008761 129 LGAADY-LVKPLRT 141 (554)
Q Consensus 129 aGA~Dy-L~KP~~~ 141 (554)
+||+.. |.|-+++
T Consensus 211 ~GAdGl~IE~H~~P 224 (250)
T PRK13397 211 VGANGIMMEVHPDP 224 (250)
T ss_pred hCCCEEEEEecCCc
Confidence 999865 5555443
No 382
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.10 E-value=2.8e+02 Score=27.15 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHHHhhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCceEEEEec
Q 008761 47 AVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 47 ~L~~lL~~~g~eV~~A~---dg---~EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iPIIVLSs 116 (554)
.+.+.+...||+|.... +. .+.++.+... .+|.||+--. ..+. .++++++.. ..+|||++-.
T Consensus 20 ~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~--~~Dgiii~~~--~~~~~~~~i~~~~~----~~iPvV~~~~ 88 (282)
T cd06318 20 AAKAHAKALGYELISTDAQGDLTKQIADVEDLLTR--GVNVLIINPV--DPEGLVPAVAAAKA----AGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHc--CCCEEEEecC--CccchHHHHHHHHH----CCCCEEEecC
Confidence 34555667799877543 22 2455656555 7999888431 2222 345666654 4688888754
No 383
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.90 E-value=3.1e+02 Score=29.92 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=57.9
Q ss_pred HHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEe-cCCCCCc----HHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 47 AVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAE-VDLPMTK----GLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 47 ~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLD-i~MP~mD----GlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
.|..+-+..+. -+.-+-+.++|...+.. ..|.|++- ..-...+ .+++|.+|... ..+|||+=.+-..
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~---G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~---~~~~vi~dGGIr~ 300 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIEL---GADGVILSNHGGRQLDDAIAPIEALAEIVAA---TYKPVLIDSGIRR 300 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHC---CcCEEEECCCCcCCCcCCccHHHHHHHHHHH---hCCeEEEeCCCCC
Confidence 34444444332 23355689999888764 47877643 2222233 48888888764 3489888888888
Q ss_pred HHHHHHHHHcCCCEEE-eCCC
Q 008761 120 VSVVVKCLRLGAADYL-VKPL 139 (554)
Q Consensus 120 ~e~~~eAL~aGA~DyL-~KP~ 139 (554)
...+.+||.+||+.++ -.|+
T Consensus 301 g~Dv~KALaLGA~aV~iGr~~ 321 (361)
T cd04736 301 GSDIVKALALGANAVLLGRAT 321 (361)
T ss_pred HHHHHHHHHcCCCEEEECHHH
Confidence 8899999999999984 3454
No 384
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=32.89 E-value=2.8e+02 Score=28.46 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=45.9
Q ss_pred EEEEEeCC----HHHHHHHHHHHhhC--CCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHH
Q 008761 34 RILLCDND----SNSSDAVFSLLVKC--SYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYI 100 (554)
Q Consensus 34 rVLIVDDd----~~~r~~L~~lL~~~--g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~I 100 (554)
+|.++..+ ......+...|++. +++++. ..+....+..+... +||+|++... ..+...+++.+
T Consensus 140 ~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~--~~d~ii~~~~--~~~~~~~~~~~ 215 (346)
T cd06330 140 TWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAA--KPDAIFSSLW--GGDLVTFVRQA 215 (346)
T ss_pred EEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhc--CCCEEEEecc--cccHHHHHHHH
Confidence 56566544 22345566666665 344431 23455566666554 7999887543 45677888888
Q ss_pred HhccCCCCceEEEEec
Q 008761 101 TRDKELQRIPVIMMSA 116 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs 116 (554)
++......+++|....
T Consensus 216 ~~~g~~~~~~~~~~~~ 231 (346)
T cd06330 216 NARGLFDGTTVVLTLT 231 (346)
T ss_pred HhcCcccCceEEeecc
Confidence 8765334556665443
No 385
>PRK07035 short chain dehydrogenase; Provisional
Probab=32.85 E-value=4.4e+02 Score=25.59 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHHHH---HHHHhcCCCceEEEEecCCCCCcHHH-HHHHHHhcc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSPRQVI---DALNAEGSDIDLILAEVDLPMTKGLK-MLKYITRDK 104 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg~EAL---e~L~~~~~~PDLILLDi~MP~mDGlE-lLr~Ir~~~ 104 (554)
+..-.|||..-...+...+...|.+.|+.|+.+ .+...+. +.+... ...+.++.+.+-+.+.++ +++.+.+..
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 344579999999999999999999899988744 3443322 222222 234444444555555543 566665432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+.+|+..+
T Consensus 84 --~~id~li~~a 93 (252)
T PRK07035 84 --GRLDILVNNA 93 (252)
T ss_pred --CCCCEEEECC
Confidence 4566766554
No 386
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=32.83 E-value=1.9e+02 Score=27.68 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=42.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCC--CCcHHHHHHHHHhccCCCCceEEEEe--cCCCHHHHHHHHHcCCCEEEeCCC
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLP--MTKGLKMLKYITRDKELQRIPVIMMS--AQDEVSVVVKCLRLGAADYLVKPL 139 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP--~mDGlElLr~Ir~~~~~~~iPIIVLS--s~~d~e~~~eAL~aGA~DyL~KP~ 139 (554)
+.++++++++..... +-++.+.+| .-.|+++++.|++.. +++||++.. ..........+.++||+-.+....
T Consensus 11 ~~~~~~~~~~~l~~~--i~~ieig~~~~~~~g~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 11 DLEEALELAKKVPDG--VDIIEAGTPLIKSEGMEAVRALREAF--PDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA 86 (202)
T ss_pred CHHHHHHHHHHhhhc--CCEEEcCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee
Confidence 566666666654212 334444333 235788888888643 467777542 222223456788999988776544
Q ss_pred C
Q 008761 140 R 140 (554)
Q Consensus 140 ~ 140 (554)
.
T Consensus 87 ~ 87 (202)
T cd04726 87 A 87 (202)
T ss_pred C
Confidence 3
No 387
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=32.66 E-value=4.4e+02 Score=25.74 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=36.0
Q ss_pred EEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 83 LAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 83 LLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
++|...--...++.++.|++. ..+||++...-.+...+..++++||+..++
T Consensus 50 v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 50 VLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred EEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 344433333467888888875 478999765445566788899999999973
No 388
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=32.64 E-value=74 Score=30.52 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=52.9
Q ss_pred HHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC----CCcHHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 46 DAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP----MTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP----~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
..|.. |...|+.+. -+..+...++.+... .||.|-+|..+. ......+++.|........+. |++++-++
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~l--~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLASL--PPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIK-VIAEGVES 213 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHHH--CGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-E-EEEECE-S
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhhc--ccccceeecccccccchhhHHHHHHHHHHHhhccccc-cceeecCC
Confidence 34444 667898765 455666677777766 799999998655 223344555554432223444 45677778
Q ss_pred HHHHHHHHHcCCCEE
Q 008761 120 VSVVVKCLRLGAADY 134 (554)
Q Consensus 120 ~e~~~eAL~aGA~Dy 134 (554)
.+....+.+.|++-+
T Consensus 214 ~~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 214 EEQLELLKELGVDYI 228 (236)
T ss_dssp HHHHHHHHHTTESEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 888888899998743
No 389
>PRK12829 short chain dehydrogenase; Provisional
Probab=32.60 E-value=2.3e+02 Score=27.67 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=48.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhc-C-CCceEEEEecCCCCCcHH-HHHHHHHhccCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAE-G-SDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~-~-~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~ 107 (554)
+..+|||..-...+...+...|.+.|+.|.......+.++.+... . .+..++.+|+. +.+.+ ++++.+.... .
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~--~ 85 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVA--DPAQVERVFDTAVERF--G 85 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCC--CHHHHHHHHHHHHHHh--C
Confidence 456899999999999999999988899887544333333333321 1 02244555554 33333 3555554432 3
Q ss_pred CceEEEEec
Q 008761 108 RIPVIMMSA 116 (554)
Q Consensus 108 ~iPIIVLSs 116 (554)
++-+|+..+
T Consensus 86 ~~d~vi~~a 94 (264)
T PRK12829 86 GLDVLVNNA 94 (264)
T ss_pred CCCEEEECC
Confidence 455665543
No 390
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.48 E-value=6.7e+02 Score=27.92 Aligned_cols=104 Identities=12% Similarity=0.131 Sum_probs=54.3
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEecC--CCCCc-HHHHHHHHHhc
Q 008761 32 KVRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEG--SDIDLILAEVD--LPMTK-GLKMLKYITRD 103 (554)
Q Consensus 32 kirVLIVDDd~~---~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~--~~PDLILLDi~--MP~mD-GlElLr~Ir~~ 103 (554)
..+|.+|+-|+. ..+.|...-...++.+..+.++.+..+.+.... ...|+||+|.- ++... -++-+..+...
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 468888887764 133455554555666666677766655544321 25899999983 33221 22333333322
Q ss_pred cCCCCceEEEEecCCCHHHHHHHH----HcCCCEEEe
Q 008761 104 KELQRIPVIMMSAQDEVSVVVKCL----RLGAADYLV 136 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~d~e~~~eAL----~aGA~DyL~ 136 (554)
. .++.-++++++......+.+.+ ..+.+.+|.
T Consensus 314 ~-~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~ 349 (407)
T PRK12726 314 V-HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFII 349 (407)
T ss_pred c-CCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEE
Confidence 1 2333355666544444443433 345566643
No 391
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.42 E-value=2e+02 Score=28.58 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhCCCEEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 44 SSDAVFSLLVKCSYQVTSVRS--PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~d--g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
+...+.+.+++.||.+..+.. ..+.++.+... .+|-|++-.. +.. ...+++++. ..+|||++-.
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~--~~dgiii~~~-~~~--~~~~~~~~~----~~ipvV~~~~ 87 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSA--LVDGFIVYGV-PRD--DPLVAALLR----RGLPVVVVDQ 87 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhc--CCCEEEEeCC-CCC--hHHHHHHHH----cCCCEEEEec
Confidence 445566777778998775443 34666666655 7898877432 111 245666654 4678888853
No 392
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=32.39 E-value=2.1e+02 Score=30.29 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=47.8
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhCCCEEE--EE------CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 33 VRILLCDNDSNS---SDAVFSLLVKCSYQVT--SV------RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 33 irVLIVDDd~~~---r~~L~~lL~~~g~eV~--~A------~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
-|+|||-|.... ...+...|+..|.++. .+ .+..++++.+++. ++|+|| -+.|..-+++.+.+-
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~II---avGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDN--GADVVI---GIGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhc--CCCEEE---EecCchhhHHHHHHH
Confidence 488888876543 3344555666665542 11 2455677777665 799887 366777777777775
Q ss_pred hccCCCCceEEEEe
Q 008761 102 RDKELQRIPVIMMS 115 (554)
Q Consensus 102 ~~~~~~~iPIIVLS 115 (554)
.. ..+|+|.|.
T Consensus 98 ~~---~~~P~iaIP 108 (351)
T cd08170 98 DY---LGAPVVIVP 108 (351)
T ss_pred HH---cCCCEEEeC
Confidence 43 457888774
No 393
>PRK06182 short chain dehydrogenase; Validated
Probab=32.37 E-value=3e+02 Score=27.35 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=50.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~iP 110 (554)
+..|||..-...+...+...|.+.|++|.......+.++.+... ...++.+|+. +.+.+ .+++.+.+.. ..+-
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~--~~~~~~~Dv~--~~~~~~~~~~~~~~~~--~~id 76 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL--GVHPLSLDVT--DEASIKAAVDTIIAEE--GRID 76 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC--CCeEEEeeCC--CHHHHHHHHHHHHHhc--CCCC
Confidence 45799999999999999999988899988544333445545433 4667777765 33333 3445554432 3456
Q ss_pred EEEEec
Q 008761 111 VIMMSA 116 (554)
Q Consensus 111 IIVLSs 116 (554)
+|+..+
T Consensus 77 ~li~~a 82 (273)
T PRK06182 77 VLVNNA 82 (273)
T ss_pred EEEECC
Confidence 666544
No 394
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=32.37 E-value=3.5e+02 Score=26.63 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=47.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHH---HHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQ---VIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~E---ALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~ 107 (554)
++|||.....-+-..+...|.+.|+.|.... +... +.+.+... .....+.+|+. +.+.+ ++++.+.+. +.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~Dv~--d~~~~~~~~~~~~~~--~g 75 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY-GEVYAVKADLS--DKDDLKNLVKEAWEL--LG 75 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEcCCC--CHHHHHHHHHHHHHh--cC
Confidence 3799999999999999999988899887544 4332 22333322 12344445543 33333 355555443 24
Q ss_pred CceEEEEec
Q 008761 108 RIPVIMMSA 116 (554)
Q Consensus 108 ~iPIIVLSs 116 (554)
.+-+|+..+
T Consensus 76 ~id~li~na 84 (259)
T PRK08340 76 GIDALVWNA 84 (259)
T ss_pred CCCEEEECC
Confidence 566776554
No 395
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=32.32 E-value=7.7e+02 Score=28.32 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=42.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHHHh-c-CCCceEEEEe----------cCCC----CC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNA-E-GSDIDLILAE----------VDLP----MT 91 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~--eV~-~A~dg~EALe~L~~-~-~~~PDLILLD----------i~MP----~m 91 (554)
.+.+|+.|-=+. +...+..++...+. +|. .....+++++.+.. . ...+||||.- +..| ..
T Consensus 13 ~~p~~~~~~~~~-l~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsrG~ta~~i~~~~~iPVv~i~~ 91 (538)
T PRK15424 13 DKPVIWTVSVSR-LFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAAGSNGAYLKSRLSVPVILIKP 91 (538)
T ss_pred CCCeEEEeeHHH-HHHHHHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEEECchHHHHHHhhCCCCEEEecC
Confidence 367888887665 56667777766653 333 23455666666622 1 1268888832 2334 35
Q ss_pred cHHHHHHHHHhc
Q 008761 92 KGLKMLKYITRD 103 (554)
Q Consensus 92 DGlElLr~Ir~~ 103 (554)
+|+++++.|...
T Consensus 92 s~~Dil~al~~a 103 (538)
T PRK15424 92 SGFDVMQALARA 103 (538)
T ss_pred CHhHHHHHHHHH
Confidence 677777777554
No 396
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=32.30 E-value=1.8e+02 Score=31.68 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=40.7
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 33 VRILLCDNDSNS----SDAVFSLLVKCSYQVTSVR---------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 33 irVLIVDDd~~~----r~~L~~lL~~~g~eV~~A~---------dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
-++|||.|.... ...+...|+..|.++..+. ...++++.+++. ++|+||- +.|.+-++..+.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~--~~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRES--GCDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CcCEEEE---eCChHHHHHHHH
Confidence 478888775332 2457778887787665442 356777777776 8999883 455555555554
Q ss_pred H
Q 008761 100 I 100 (554)
Q Consensus 100 I 100 (554)
|
T Consensus 125 i 125 (395)
T PRK15454 125 V 125 (395)
T ss_pred H
Confidence 4
No 397
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=32.22 E-value=2.8e+02 Score=30.20 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=52.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH-HHhccCCCCc
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-V-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY-ITRDKELQRI 109 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~e-V-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~-Ir~~~~~~~i 109 (554)
.+|+.+|-++...+.++.-++..+.. + ....|..+.+.. .. .+|+|++|- |+. +.+++.. |... .+-
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~~--~fD~V~lDP--~Gs-~~~~l~~al~~~---~~~ 151 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--ER--KFDVVDIDP--FGS-PAPFLDSAIRSV---KRG 151 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--cC--CCCEEEECC--CCC-cHHHHHHHHHHh---cCC
Confidence 37999999999999999888766543 2 344555554432 22 699999996 443 4566666 5543 344
Q ss_pred eEEEEecCCCH
Q 008761 110 PVIMMSAQDEV 120 (554)
Q Consensus 110 PIIVLSs~~d~ 120 (554)
-+|.+|+.+-.
T Consensus 152 gilyvSAtD~~ 162 (382)
T PRK04338 152 GLLCVTATDTA 162 (382)
T ss_pred CEEEEEecCch
Confidence 78899976553
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.22 E-value=3.8e+02 Score=29.29 Aligned_cols=88 Identities=10% Similarity=0.104 Sum_probs=47.8
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC-CCCCcH--HHHHHHHHhccCC
Q 008761 33 VRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD-LPMTKG--LKMLKYITRDKEL 106 (554)
Q Consensus 33 irVLIVDDd~~---~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~-MP~mDG--lElLr~Ir~~~~~ 106 (554)
.+|.+|..+.. ..+.|..+-+..|..+..+.+..+....+.... ..|+||+|.- +...|. .+.+..|.... .
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~-~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGAD-T 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccC-C
Confidence 47777776654 234455555555766666665555544444332 6799999873 332232 23444443311 1
Q ss_pred CCceEEEEecCCCHHH
Q 008761 107 QRIPVIMMSAQDEVSV 122 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~ 122 (554)
+.-.++||++....+.
T Consensus 246 ~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 246 PVQRLLLLNATSHGDT 261 (374)
T ss_pred CCeEEEEecCccChHH
Confidence 2234778887655443
No 399
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=32.19 E-value=4.8e+02 Score=25.45 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=47.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHh-cCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~-~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~i 109 (554)
.-+|||..-...+...+...|.+.|+.|..+....+.++.+.. ....+..+-+| +.+.+.+ ++++.+.+.. ..+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D--~~~~~~~~~~~~~~~~~~--~~i 81 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLD--VTRQDSIDRIVAAAVERF--GGI 81 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEcc--CCCHHHHHHHHHHHHHHc--CCC
Confidence 3479999999999999999999899998755433343433332 21133444444 4444443 3555555432 445
Q ss_pred eEEEEe
Q 008761 110 PVIMMS 115 (554)
Q Consensus 110 PIIVLS 115 (554)
-+|+..
T Consensus 82 d~li~~ 87 (257)
T PRK07067 82 DILFNN 87 (257)
T ss_pred CEEEEC
Confidence 566554
No 400
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=32.08 E-value=3.9e+02 Score=26.54 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=53.2
Q ss_pred HhhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCC-CCcHHHHHHHHHhccCCC-CceEEEEecCCCHHHHHHHHH
Q 008761 52 LVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKCLR 128 (554)
Q Consensus 52 L~~~g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mDGlElLr~Ir~~~~~~-~iPIIVLSs~~d~e~~~eAL~ 128 (554)
....+.. +..+.+..|+.+.... ..|.|-+ .| ..-|++.++.++.. .+ .+|++.+.+- +.+.+.+.++
T Consensus 100 ~~~~~~~~~~G~~t~~E~~~A~~~---Gad~vk~---Fpa~~~G~~~l~~l~~~--~~~~ipvvaiGGI-~~~n~~~~~~ 170 (206)
T PRK09140 100 AVALGMVVMPGVATPTEAFAALRA---GAQALKL---FPASQLGPAGIKALRAV--LPPDVPVFAVGGV-TPENLAPYLA 170 (206)
T ss_pred HHHCCCcEEcccCCHHHHHHHHHc---CCCEEEE---CCCCCCCHHHHHHHHhh--cCCCCeEEEECCC-CHHHHHHHHH
Confidence 3344543 3368889998887754 4788875 44 33478889988864 23 5898877654 6678899999
Q ss_pred cCCCEEE
Q 008761 129 LGAADYL 135 (554)
Q Consensus 129 aGA~DyL 135 (554)
+||+.+-
T Consensus 171 aGa~~va 177 (206)
T PRK09140 171 AGAAGFG 177 (206)
T ss_pred CCCeEEE
Confidence 9999874
No 401
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.99 E-value=6.5e+02 Score=27.62 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=55.5
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCcHH---HHHHHHHhc
Q 008761 32 KVRILLCDNDSNS---SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD--LPMTKGL---KMLKYITRD 103 (554)
Q Consensus 32 kirVLIVDDd~~~---r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~--MP~mDGl---ElLr~Ir~~ 103 (554)
..+|.+|+-|..- ...|..+....|+.|..+.+..+....+... ...|+||+|.- ++. +.. ++.+.+...
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~-~~~~l~el~~~l~~~ 283 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSPK-DFMKLAEMKELLNAC 283 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCcc-CHHHHHHHHHHHHhc
Confidence 4588888877531 2223443344566677777776666555543 37899999983 332 322 222233322
Q ss_pred cCCCCceEEEEecCCCHHHHHHHH----HcCCCEEEe
Q 008761 104 KELQRIPVIMMSAQDEVSVVVKCL----RLGAADYLV 136 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~d~e~~~eAL----~aGA~DyL~ 136 (554)
. .+.-.++|+++......+.+.+ ..|...+|.
T Consensus 284 ~-~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 284 G-RDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred C-CCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 1 1123567888766654444333 245666643
No 402
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.97 E-value=2.8e+02 Score=26.96 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 45 SDAVFSLLVKCSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~d---g---~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
...+...+++.||.+..... . .++++.+... .+|.||+....+. -..++++.. ..+|+|++-.
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgiii~~~~~~---~~~~~~~~~----~~ipvV~i~~ 86 (270)
T cd06296 18 LRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSAR--RTDGVILVTPELT---SAQRAALRR----TGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHc--CCCEEEEecCCCC---hHHHHHHhc----CCCCEEEEec
Confidence 34455556677888764332 2 2456666555 7998887543332 234566654 4678888753
No 403
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=31.96 E-value=5e+02 Score=25.60 Aligned_cols=82 Identities=10% Similarity=0.150 Sum_probs=51.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcH--HHHHHHHHhccCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG--LKMLKYITRDKELQ 107 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e-V~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDG--lElLr~Ir~~~~~~ 107 (554)
..+|..||-++.....+..-++..+.+ +. ...|..+.+.. ....+|+|++|-= -..| -++++.|.......
T Consensus 76 a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~---~~~~fDlV~~DPP--y~~g~~~~~l~~l~~~~~l~ 150 (199)
T PRK10909 76 AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ---PGTPHNVVFVDPP--FRKGLLEETINLLEDNGWLA 150 (199)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh---cCCCceEEEECCC--CCCChHHHHHHHHHHCCCcC
Confidence 458999999999999998888776642 33 44555554432 1225999999853 1233 35667776532223
Q ss_pred CceEEEEecCC
Q 008761 108 RIPVIMMSAQD 118 (554)
Q Consensus 108 ~iPIIVLSs~~ 118 (554)
+--||++....
T Consensus 151 ~~~iv~ve~~~ 161 (199)
T PRK10909 151 DEALIYVESEV 161 (199)
T ss_pred CCcEEEEEecC
Confidence 34567666543
No 404
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=31.92 E-value=3.3e+02 Score=28.91 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=45.6
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 59 V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.+.+.+.+++.+.+.. .+|+|+||-.-| -+--++++.++ .+ .+|..|+.-+.+.+.+-.+.|++-+.
T Consensus 212 eVEv~sleea~ea~~~---gaDiI~LDn~s~-e~~~~av~~~~-----~~-~~ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 212 EVEVENLDELDQALKA---GADIIMLDNFTT-EQMREAVKRTN-----GR-ALLEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEeCCCCh-HHHHHHHHhhc-----CC-eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4478899999999975 489999995544 12222333222 22 35667778888888888888887653
No 405
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=31.88 E-value=3.8e+02 Score=29.31 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=67.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC----EEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCcH-------HHHHHHH
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSY----QVTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKG-------LKMLKYI 100 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~----eV~~A~dg~EALe~L~~~-~~~PDLILLDi~MP~mDG-------lElLr~I 100 (554)
.-..+.++-..+.+++..+=...+. .+.++.|.++.++.++.. ....+++++--+-+...| ++.++.|
T Consensus 118 yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v 197 (358)
T KOG2335|consen 118 YGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAV 197 (358)
T ss_pred ccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHH
Confidence 4456667666666666555555442 344778888877776542 125777777666665554 6888899
Q ss_pred HhccCCCCceEEEEecCCCHHHHHHHHH-cCCCEEEe
Q 008761 101 TRDKELQRIPVIMMSAQDEVSVVVKCLR-LGAADYLV 136 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs~~d~e~~~eAL~-aGA~DyL~ 136 (554)
++.- +.+|||+=..-...+.+.++++ .||++.+.
T Consensus 198 ~~~~--~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 198 RENV--PDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred HHhC--cCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 8753 4477776555566678888888 89988754
No 406
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=31.84 E-value=4.3e+02 Score=26.42 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=54.1
Q ss_pred HHhhCCC-EEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHH
Q 008761 51 LLVKCSY-QVTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (554)
Q Consensus 51 lL~~~g~-eV~~A~dg~EALe~L~~~-~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~ 128 (554)
.|...+. -|....+.+++++.++.. .....+ +.+.|-.-+.++.+++|++.. +++. |=...--+.+.+.++.+
T Consensus 4 ~l~~~~liaVlr~~~~e~a~~~~~al~~~Gi~~--iEit~~t~~a~~~i~~l~~~~--~~~~-vGAGTVl~~~~a~~a~~ 78 (204)
T TIGR01182 4 LLREAKIVPVIRIDDVDDALPLAKALIEGGLRV--LEVTLRTPVALDAIRLLRKEV--PDAL-IGAGTVLNPEQLRQAVD 78 (204)
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHHcCCCE--EEEeCCCccHHHHHHHHHHHC--CCCE-EEEEeCCCHHHHHHHHH
Confidence 4445553 355666777777766542 113554 444444556888899998643 3322 22233567788999999
Q ss_pred cCCCEEEeCCCCHHHHHHH
Q 008761 129 LGAADYLVKPLRTNELLNL 147 (554)
Q Consensus 129 aGA~DyL~KP~~~eeL~~~ 147 (554)
+||. ||.-|....++.+.
T Consensus 79 aGA~-FivsP~~~~~v~~~ 96 (204)
T TIGR01182 79 AGAQ-FIVSPGLTPELAKH 96 (204)
T ss_pred cCCC-EEECCCCCHHHHHH
Confidence 9986 55556555555443
No 407
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.82 E-value=1.8e+02 Score=29.76 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHH-
Q 008761 43 NSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVS- 121 (554)
Q Consensus 43 ~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e- 121 (554)
..-..|.+..++.|+...+..-..+++++|.+. ++-.+=+.-.+.+-+.+|+++.+ ...|||+=|+-...+
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~----~~~~~KIaS~dl~n~~lL~~~A~----tgkPvIlSTG~stl~E 127 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLEEL----GVPAYKIASGDLTNLPLLEYIAK----TGKPVILSTGMSTLEE 127 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH----T-SEEEE-GGGTT-HHHHHHHHT----T-S-EEEE-TT--HHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHc----CCCEEEeccccccCHHHHHHHHH----hCCcEEEECCCCCHHH
Confidence 344556777778898887666677888888654 44455566667788999999986 467999888766544
Q ss_pred --HHHHHH-HcCCCEEE
Q 008761 122 --VVVKCL-RLGAADYL 135 (554)
Q Consensus 122 --~~~eAL-~aGA~DyL 135 (554)
.+++.+ +.|..+++
T Consensus 128 I~~Av~~~~~~~~~~l~ 144 (241)
T PF03102_consen 128 IERAVEVLREAGNEDLV 144 (241)
T ss_dssp HHHHHHHHHHHCT--EE
T ss_pred HHHHHHHHHhcCCCCEE
Confidence 455555 66777663
No 408
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=31.73 E-value=3.4e+02 Score=27.78 Aligned_cols=76 Identities=7% Similarity=0.098 Sum_probs=51.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECC-------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVTSVRS-------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~-g~eV~~A~d-------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
...+|.++...+...+.+.+.|... +.++.-+.+ .++.++.+.+. .||+|++-+.+|...- ++.+++.
T Consensus 104 ~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s--~~dil~VglG~PkQE~--~~~~~~~ 179 (243)
T PRK03692 104 EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHAS--GAKIVTVAMGSPKQEI--FMRDCRL 179 (243)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhc--CCCEEEEECCCcHHHH--HHHHHHH
Confidence 3589999999999999988888643 555543222 23346666655 8999999999998654 3555554
Q ss_pred ccCCCCceEEE
Q 008761 103 DKELQRIPVIM 113 (554)
Q Consensus 103 ~~~~~~iPIIV 113 (554)
. ...+|++
T Consensus 180 ~---~~~~v~~ 187 (243)
T PRK03692 180 V---YPDALYM 187 (243)
T ss_pred h---CCCCEEE
Confidence 3 2445543
No 409
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=31.69 E-value=6.6e+02 Score=26.84 Aligned_cols=63 Identities=14% Similarity=0.288 Sum_probs=36.9
Q ss_pred ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 79 PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
-|++|+. | -|+.+++.+. ..+|+|++.... +.....-..+.|+. ++ +-+.+++...+..++..
T Consensus 274 aDl~I~k---~--gg~tl~EA~a-----~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~--~~~~~~l~~~i~~ll~~ 338 (391)
T PRK13608 274 SQLMITK---P--GGITISEGLA-----RCIPMIFLNPAPGQELENALYFEEKGFG-KI--ADTPEEAIKIVASLTNG 338 (391)
T ss_pred hhEEEeC---C--chHHHHHHHH-----hCCCEEECCCCCCcchhHHHHHHhCCcE-EE--eCCHHHHHHHHHHHhcC
Confidence 4777763 2 2666666654 467999875422 22333334456654 33 33678888888877643
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.53 E-value=3.2e+02 Score=31.60 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=44.6
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCC-CCCc--HHHHHHHHHhccCC
Q 008761 33 VRILLCDNDSNS---SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDL-PMTK--GLKMLKYITRDKEL 106 (554)
Q Consensus 33 irVLIVDDd~~~---r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~M-P~mD--GlElLr~Ir~~~~~ 106 (554)
.+|.+|+-|..- .+.|...-...|+.+..+.+..+..+.+.... .+|+||+|.-- ...| -.+.+..|....
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-- 457 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-- 457 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEecCCCcchhhHHHHHHHHHHHHhh--
Confidence 478888765421 22333333344666677777766666665542 68999999731 1111 122333444322
Q ss_pred CCceEEEEecCCC
Q 008761 107 QRIPVIMMSAQDE 119 (554)
Q Consensus 107 ~~iPIIVLSs~~d 119 (554)
....++||++...
T Consensus 458 ~~a~lLVLpAtss 470 (559)
T PRK12727 458 QVTSLLVLPANAH 470 (559)
T ss_pred cCCcEEEEECCCC
Confidence 2335666665543
No 411
>PRK07024 short chain dehydrogenase; Provisional
Probab=31.48 E-value=5.1e+02 Score=25.39 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=46.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCC--CceEEEEecCCCCCcH-HHHHHHHHhccCCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGS--DIDLILAEVDLPMTKG-LKMLKYITRDKELQR 108 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~--~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~ 108 (554)
.+|||..-...+...|...|.+.|+.|+.+. +.+.+-+....... +...+.+|+. +.+. .++++.+.... ..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~~~i~~~~~~~~~~~--g~ 78 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVR--DADALAAAAADFIAAH--GL 78 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCC--CHHHHHHHHHHHHHhC--CC
Confidence 4799999999999999999988899887544 44433222222111 2344444543 3333 34555554432 34
Q ss_pred ceEEEEec
Q 008761 109 IPVIMMSA 116 (554)
Q Consensus 109 iPIIVLSs 116 (554)
+-+|+..+
T Consensus 79 id~lv~~a 86 (257)
T PRK07024 79 PDVVIANA 86 (257)
T ss_pred CCEEEECC
Confidence 55665554
No 412
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.43 E-value=2.2e+02 Score=27.73 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=36.7
Q ss_pred HHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCC-cH-HHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMT-KG-LKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~m-DG-lElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+...+.+.||.+.... +.+ +.++.+... .+|-||+.-..+.. .. .+.++.+.. ..+|||++-.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~~~~~~~~~~~~i~~~~~----~~ipvV~i~~ 91 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLAR--GVRGVVFISSLHADTHADHSHYERLAE----RGLPVVLVNG 91 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHc--CCCEEEEeCCCCCcccchhHHHHHHHh----CCCCEEEEcC
Confidence 445556667788876433 222 456666655 79988874333222 21 233555543 4678888853
No 413
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=31.43 E-value=4.7e+02 Score=27.93 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE------EeC-CCCHHHHHHHHHHHHH
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY------LVK-PLRTNELLNLWTHMWR 153 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy------L~K-P~~~eeL~~~L~~llr 153 (554)
++.+.++++.. ...+|||.+.+-.+.+.+.+.+.+||+.+ +.+ |.-..++...+.+++.
T Consensus 276 l~~v~~l~~~~-~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 276 TEVIRRLYKEL-GGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 44666666542 12689999999999999999999998765 344 6555555555555443
No 414
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=31.43 E-value=4.1e+02 Score=27.20 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=46.7
Q ss_pred EEEEEeCC-H---HHHHHHHHHHhhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 34 RILLCDND-S---NSSDAVFSLLVKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 34 rVLIVDDd-~---~~r~~L~~lL~~~g~eV~~---A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
+|.||-++ . .....+...|+..|++|.. . .|-...+..++.. +||+|++...- .+...+++.+++
T Consensus 134 ~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~--~pd~v~~~~~~--~~~~~~~~~~~~ 209 (333)
T cd06358 134 RWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAAS--GADAVLSTLVG--QDAVAFNRQFAA 209 (333)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHc--CCCEEEEeCCC--CchHHHHHHHHH
Confidence 55555433 2 3345666777778887641 1 2444556666665 79999987543 456778888887
Q ss_pred ccCCCCceEEEEec
Q 008761 103 DKELQRIPVIMMSA 116 (554)
Q Consensus 103 ~~~~~~iPIIVLSs 116 (554)
.. -..+++..+.
T Consensus 210 ~G--~~~~~~~~~~ 221 (333)
T cd06358 210 AG--LRDRILRLSP 221 (333)
T ss_pred cC--CCccCceeec
Confidence 54 3345655444
No 415
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=31.41 E-value=1.3e+02 Score=31.25 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=40.2
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008761 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140 (554)
Q Consensus 78 ~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~ 140 (554)
.||++|+=---|...|-...+++... ..+|.|++|.-.... ..++|+..-.+||.-+.+
T Consensus 59 ~pdf~I~isPN~~~PGP~~ARE~l~~---~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 59 DPDFVIVISPNAAAPGPTKAREMLSA---KGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp --SEEEEE-S-TTSHHHHHHHHHHHH---SSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred CCCEEEEECCCCCCCCcHHHHHHHHh---CCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 79999987777788898888888765 689999999754433 357888888888665543
No 416
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=31.40 E-value=3.8e+02 Score=26.59 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=36.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEecC
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEVD 87 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-------dg~EALe~L~~~~~~PDLILLDi~ 87 (554)
+|||+.....+-..|.+.|.+.|++|.... +.+...+.+... +||+|+--..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~--~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAI--RPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhC--CCCEEEECCc
Confidence 589999989999999998888899887432 233333344333 6899886543
No 417
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=31.39 E-value=1.1e+02 Score=32.08 Aligned_cols=53 Identities=13% Similarity=0.324 Sum_probs=40.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEecCCC
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSV-------RSPRQVIDALNAEGSDIDLILAEVDLP 89 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A-------~dg~EALe~L~~~~~~PDLILLDi~MP 89 (554)
+|||...+-.+-..|.++|. .+++|+.. .+.+...+.+++. +||+||--.-+.
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~--~PDvVIn~AAyt 61 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRET--RPDVVINAAAYT 61 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhh--CCCEEEECcccc
Confidence 49999999999999999998 55776633 3566677777765 899999554444
No 418
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=31.36 E-value=1.4e+02 Score=29.58 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHHhhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHH
Q 008761 50 SLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (554)
Q Consensus 50 ~lL~~~g~-eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~ 128 (554)
+.|++.+. -|....+.+++++.++..- .-.+=++.+.|-.-+.+++++.|++.. +++ +|=...-.+.+.+.+|++
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~-~vGAGTV~~~e~a~~a~~ 78 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEALI-EGGIRAIEITLRTPNALEAIEALRKEF--PDL-LVGAGTVLTAEQAEAAIA 78 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHHH-HTT--EEEEETTSTTHHHHHHHHHHHH--TTS-EEEEES--SHHHHHHHHH
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCccHHHHHHHHHHHC--CCC-eeEEEeccCHHHHHHHHH
Confidence 44555553 3444445555555554310 113335666666667889999888753 442 233334567889999999
Q ss_pred cCCCEEEeCCCCHHHHHHH
Q 008761 129 LGAADYLVKPLRTNELLNL 147 (554)
Q Consensus 129 aGA~DyL~KP~~~eeL~~~ 147 (554)
+||.-.+. |.-.+++.+.
T Consensus 79 aGA~FivS-P~~~~~v~~~ 96 (196)
T PF01081_consen 79 AGAQFIVS-PGFDPEVIEY 96 (196)
T ss_dssp HT-SEEEE-SS--HHHHHH
T ss_pred cCCCEEEC-CCCCHHHHHH
Confidence 99975555 6555555443
No 419
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=31.31 E-value=1.2e+02 Score=28.29 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=20.0
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCC
Q 008761 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 78 ~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
+|||||....+. -+..+.|.+ ..+|++++....
T Consensus 60 ~PDlii~~~~~~----~~~~~~l~~----~gi~v~~~~~~~ 92 (195)
T cd01143 60 KPDLVIVSSSSL----AELLEKLKD----AGIPVVVLPAAS 92 (195)
T ss_pred CCCEEEEcCCcC----HHHHHHHHH----cCCcEEEeCCCC
Confidence 799998854332 235566654 346777776543
No 420
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=31.27 E-value=5.1e+02 Score=25.37 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=39.7
Q ss_pred ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 79 PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.|++++-... +.-|..+++.+. ..+|||+ +...... +.+.. .+++.++.+.+++...+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a-----~g~PvI~-~~~~~~~---e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA-----CGLPVVA-TDVGDNA---ELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh-----cCCCEEE-cCCCChH---HHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 5777764433 333566777765 4578775 3333222 22222 56888888999999988888764
No 421
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=31.26 E-value=5.6e+02 Score=25.81 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEE
Q 008761 46 DAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVL 114 (554)
..+...++..|++|.. ..+-...+..++.. .||+|++... ..+...+++.+++.. ...++|..
T Consensus 153 ~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~--~~~~vi~~~~--~~~~~~~~~~~~~~g--~~~~~~~~ 222 (334)
T cd06342 153 DEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAA--NPDAVFFGGY--YPEAGPLVRQMRQLG--LKAPFMGG 222 (334)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhc--CCCEEEEcCc--chhHHHHHHHHHHcC--CCCcEEec
Confidence 4455666666876652 13455667777655 7999987543 446677888888754 34455433
No 422
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=31.24 E-value=5e+02 Score=26.31 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=34.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi 86 (554)
..+|..||-++...+..+.-+...+.++.. .|..+.+...... .+|+|++|.
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~~--~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALRG--RVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcCC--CEeEEEECC
Confidence 458999999999998888877766655443 3443333221112 699999984
No 423
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.06 E-value=1.6e+02 Score=33.24 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCC-CCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDL-PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~M-P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
+..+.++.|... ..|+|++|..- ....-++++++|++.. ++++|| ...-...+.+..++++||+.+-
T Consensus 227 ~~~~~a~~Lv~a--Gvd~i~~D~a~~~~~~~~~~i~~ik~~~--p~~~v~-agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 227 DVAAKARALLEA--GVDVLVVDTAHGHQEKMLEALRAVRALD--PGVPIV-AGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hHHHHHHHHHHh--CCCEEEEeccCCccHHHHHHHHHHHHHC--CCCeEE-eeccCCHHHHHHHHHcCCCEEE
Confidence 444555555444 68999999843 3556688999998753 555544 2244567788889999998864
No 424
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=30.96 E-value=3.7e+02 Score=29.49 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=62.5
Q ss_pred eCCHHHHHHHHHHHhhCCCE----EEEE-----------------------CCHHHHHHHHHhcCCCceEEEEecCCCCC
Q 008761 39 DNDSNSSDAVFSLLVKCSYQ----VTSV-----------------------RSPRQVIDALNAEGSDIDLILAEVDLPMT 91 (554)
Q Consensus 39 DDd~~~r~~L~~lL~~~g~e----V~~A-----------------------~dg~EALe~L~~~~~~PDLILLDi~MP~m 91 (554)
+++....+.+.+.++..||+ |..+ -+.+++++.+.....+++++.+.=-++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56667777788888766442 2222 24488888776532247787776666554
Q ss_pred cHHHHHHHHHhccCCCCceEEEEecC---CCHHHHHHHHHcCCCEE-EeCCCCHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSAQ---DEVSVVVKCLRLGAADY-LVKPLRTNELLN 146 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs~---~d~e~~~eAL~aGA~Dy-L~KP~~~eeL~~ 146 (554)
| ++-.++|++.. -..+|| +... .+.....++++.|+.++ ++||-..--|..
T Consensus 290 D-~eg~~~L~~~~-g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite 344 (408)
T cd03313 290 D-WEGWAKLTAKL-GDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTE 344 (408)
T ss_pred C-HHHHHHHHHhc-CCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHH
Confidence 4 56666676531 013444 3432 35778888999887665 678876443433
No 425
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=30.94 E-value=1.7e+02 Score=29.26 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=50.5
Q ss_pred ECCHHHHHHHHHhcCCCce-EEEEecCCCC---CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 62 VRSPRQVIDALNAEGSDID-LILAEVDLPM---TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 62 A~dg~EALe~L~~~~~~PD-LILLDi~MP~---mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..+..+..+.+... ..| |+++|+.--+ ..-++++++|++. ..+||++-.+-.+.+.+.+++..|++..+.
T Consensus 26 ~~d~~~~a~~~~~~--G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQ--GADELVFLDITASSEGRETMLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHC--CCCEEEEEcCCcccccCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 34777777777665 345 7777876422 1236788888764 468999888888889999999999887654
No 426
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=30.92 E-value=3.4e+02 Score=28.13 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHhhC-CCEEE------EECCHHHHHHHHHhcCCCceEEEEecCCC-CCcHHHHHHHHHhccCCCCceE
Q 008761 40 NDSNSSDAVFSLLVKC-SYQVT------SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 40 Dd~~~r~~L~~lL~~~-g~eV~------~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mDGlElLr~Ir~~~~~~~iPI 111 (554)
|.......++.++... ++.|+ .+.+..+|++.|... .++=||.-=.-+ -.+|++.|++|.+.. .. .+
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l--G~~rILTSGg~~~a~~g~~~L~~lv~~a--~~-~~ 172 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL--GVARILTSGQQQDAEQGLSLIMELIAAS--DG-PI 172 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc--CCCEEECCCCCCCHHHHHHHHHHHHHhc--CC-CE
Confidence 4455666777777654 34332 456899999999887 687777755444 468999999997753 22 45
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEE
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
||..+--..+.+.+....|+..|-
T Consensus 173 Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 173 IMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEe
Confidence 666666666666666678888874
No 427
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=30.86 E-value=2.4e+02 Score=29.18 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHH----HHHHhhCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHH-HHHHHHhccC
Q 008761 34 RILLCDNDSNSSDAV----FSLLVKCS--YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLK-MLKYITRDKE 105 (554)
Q Consensus 34 rVLIVDDd~~~r~~L----~~lL~~~g--~eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlE-lLr~Ir~~~~ 105 (554)
.|||-|++..+.-.+ ..+-+..+ ..+ +.+.+.+++.+.+.. .+|+|.+|-.-| +.+. +++.++..
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~--e~l~~~v~~i~~~-- 225 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSP--EELKEAVKLLKGL-- 225 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCH--HHHHHHHHHhccC--
Confidence 567777664443222 22222233 233 478899999999865 589999997554 2222 23333321
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 106 ~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+++| |+.++--+.+.+.+....||+.+-.
T Consensus 226 -~~i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 226 -PRVL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred -CCeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 3555 4556667788888999999988743
No 428
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=30.80 E-value=2.6e+02 Score=27.93 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCCC-cH--HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 63 RSPRQVIDALNAEGSDIDLILAEVDLPMT-KG--LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 63 ~dg~EALe~L~~~~~~PDLILLDi~MP~m-DG--lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
-+..+.++.+.... --.+|++|+.--++ .| +++++.+... ..+|||.-.+-.+.+...++.+.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~---~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEA---VNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHH---HSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHH---cCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 35777788777653 45789999966543 33 6788888765 478999888888888999999999988875
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.72 E-value=5.7e+02 Score=26.58 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=32.3
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHH---HHHHHHhcCCCceEEEEecC
Q 008761 33 VRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQ---VIDALNAEGSDIDLILAEVD 87 (554)
Q Consensus 33 irVLIVDDd~~---~r~~L~~lL~~~g~eV~~A~dg~E---ALe~L~~~~~~PDLILLDi~ 87 (554)
.+|.+|+-+.. ....+.......++.+..+.+..+ +++.+... ..+|+||+|.-
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 56777776543 333444444456788776666544 44444332 26899999973
No 430
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=30.63 E-value=3.3e+02 Score=26.27 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=39.2
Q ss_pred CCHHHHH---HHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcH--HHHHHHHHhccCCCC
Q 008761 40 NDSNSSD---AVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKG--LKMLKYITRDKELQR 108 (554)
Q Consensus 40 Dd~~~r~---~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDG--lElLr~Ir~~~~~~~ 108 (554)
+++.+.. .+...+.+.||.+..+. +.. ++++.+... ++|-||+- +..+. .++++.++. ..
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~dgii~~---~~~~~~~~~~l~~l~~----~~ 80 (268)
T cd06323 10 NNPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITR--GVDAIIIN---PTDSDAVVPAVKAANE----AG 80 (268)
T ss_pred cCHHHHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHc--CCCEEEEc---CCChHHHHHHHHHHHH----CC
Confidence 3444443 44555667788887543 233 345554444 78987773 22222 356666654 46
Q ss_pred ceEEEEec
Q 008761 109 IPVIMMSA 116 (554)
Q Consensus 109 iPIIVLSs 116 (554)
+|+|++..
T Consensus 81 ipvv~~~~ 88 (268)
T cd06323 81 IPVFTIDR 88 (268)
T ss_pred CcEEEEcc
Confidence 89988855
No 431
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=30.61 E-value=4.1e+02 Score=27.54 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC----------CcHHHHHHHHHhccCCCCceEEEEecCCCHH----HHHHHHHc
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPM----------TKGLKMLKYITRDKELQRIPVIMMSAQDEVS----VVVKCLRL 129 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~----------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e----~~~eAL~a 129 (554)
--..|+++|... .||++++++-||- -+--|+++.++.....-+-||++=..+...+ .-..|..+
T Consensus 167 ~e~kaIdiL~~~--~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCmrP~Ge~rvk~d~~av~~ 244 (275)
T COG1856 167 GEFKAIDILVNY--EPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCMRPRGEWRVKLDKEAVLA 244 (275)
T ss_pred chHHHHHHHhcC--CCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCCCeeEeecCcCchhHHHHHHHHHHc
Confidence 457899999876 8999999998872 2333444444433322333887666554433 33445566
Q ss_pred CCCEEEeCCCC
Q 008761 130 GAADYLVKPLR 140 (554)
Q Consensus 130 GA~DyL~KP~~ 140 (554)
|+ |-|.+|..
T Consensus 245 gV-d~It~P~~ 254 (275)
T COG1856 245 GV-DRITFPPR 254 (275)
T ss_pred CC-ceeecCCc
Confidence 65 45666653
No 432
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.55 E-value=5.1e+02 Score=25.59 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCC---CCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDID-LILAEVDLP---MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PD-LILLDi~MP---~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+..+.+... ..+ |++.|+..- ....+++++++.+. ..+||++..+-.+.+.+.+++..||+.++.
T Consensus 150 ~~~~~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 150 TPVEAAKRFEEL--GAGSILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 455655665544 445 445566322 22357888888864 468999888888888888899999998754
No 433
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.53 E-value=6.3e+02 Score=26.19 Aligned_cols=88 Identities=11% Similarity=0.191 Sum_probs=49.5
Q ss_pred HHHHHhhCCCEEE----EECCHHH---HHHHHHhcCCCceEEEEecCC---CCCc----HHHHHHHHHhccCCCCceEEE
Q 008761 48 VFSLLVKCSYQVT----SVRSPRQ---VIDALNAEGSDIDLILAEVDL---PMTK----GLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 48 L~~lL~~~g~eV~----~A~dg~E---ALe~L~~~~~~PDLILLDi~M---P~mD----GlElLr~Ir~~~~~~~iPIIV 113 (554)
|.+.+.+.|.-|. .+.+.++ |.+.+... ..++++||.... +.-. -+..+..+++. .++||++
T Consensus 126 LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~-Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~---~~~pV~~ 201 (266)
T PRK13398 126 LLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSE-GNENVVLCERGIRTFETYTRNTLDLAAVAVIKEL---SHLPIIV 201 (266)
T ss_pred HHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhc---cCCCEEE
Confidence 4444455554443 2324444 55555543 368999998633 3222 34445555543 4689887
Q ss_pred EecCC-C-----HHHHHHHHHcCCCEE-EeCCC
Q 008761 114 MSAQD-E-----VSVVVKCLRLGAADY-LVKPL 139 (554)
Q Consensus 114 LSs~~-d-----~e~~~eAL~aGA~Dy-L~KP~ 139 (554)
=+++. . ......|+.+||++. |.|-+
T Consensus 202 D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 202 DPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred eCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 45543 3 456788999999854 55543
No 434
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=30.51 E-value=2.6e+02 Score=26.56 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=46.4
Q ss_pred cEEEEEeCCHHHHHHHHHHH---hhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLL---VKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL---~~~g~e--V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
.-++||.||+..+.-|+.-. .+.+-. |+-+. -.++++.|++. -|.+-| --.+|-++.++|.- .
T Consensus 63 ~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~-t~~~L~~Lr~l--apgl~l-----~P~sgddLA~rL~l----~ 130 (142)
T PF11072_consen 63 QPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVA-TEAALQRLRQL--APGLPL-----LPVSGDDLARRLGL----S 130 (142)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHH--cCCCee-----cCCCHHHHHHHhCC----C
Confidence 35899999999999887644 333321 22333 45667777665 355444 45689999999853 5
Q ss_pred CceEEEEe
Q 008761 108 RIPVIMMS 115 (554)
Q Consensus 108 ~iPIIVLS 115 (554)
+-||+|-.
T Consensus 131 HYPvLIt~ 138 (142)
T PF11072_consen 131 HYPVLITA 138 (142)
T ss_pred cccEEeec
Confidence 67887643
No 435
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=30.51 E-value=3.3e+02 Score=26.95 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEec---CCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDID-LILAEV---DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PD-LILLDi---~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
++.++++.+... ..+ ++++|+ ......-++++++|.+. ..+||++=..-.+.+.+.+++..|++..+.
T Consensus 31 dp~~~a~~~~~~--g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~---~~~pv~~~ggi~~~~d~~~~~~~G~~~vil 102 (232)
T TIGR03572 31 DPVNAARIYNAK--GADELIVLDIDASKRGREPLFELISNLAEE---CFMPLTVGGGIRSLEDAKKLLSLGADKVSI 102 (232)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeCCCcccCCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCEEEE
No 436
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=30.49 E-value=5.8e+02 Score=27.43 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=54.2
Q ss_pred HHHHHHHhhCCCEEE--EE---CCHHHHHHHHHhcCCCceEEEEecCCC-----------------------CCcHHHHH
Q 008761 46 DAVFSLLVKCSYQVT--SV---RSPRQVIDALNAEGSDIDLILAEVDLP-----------------------MTKGLKML 97 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~--~A---~dg~EALe~L~~~~~~PDLILLDi~MP-----------------------~mDGlElL 97 (554)
+.|..+.+..++-|. .. .+.++|..+. +. .+|.|.+.-.=. +....+.+
T Consensus 176 e~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~-~~--Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l 252 (352)
T PRK05437 176 DNIAEIVSALPVPVIVKEVGFGISKETAKRLA-DA--GVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSL 252 (352)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHH-Hc--CCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHH
Confidence 556666655443322 23 3555554443 33 588888744210 12233455
Q ss_pred HHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCC
Q 008761 98 KYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPL 139 (554)
Q Consensus 98 r~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy-L~KP~ 139 (554)
..++... ..+|||...+-.+...+.+++.+||+.+ +-.|+
T Consensus 253 ~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~ 293 (352)
T PRK05437 253 LEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGMAGPF 293 (352)
T ss_pred HHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHH
Confidence 5555431 4689999888899999999999999988 44443
No 437
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=30.41 E-value=5e+02 Score=25.02 Aligned_cols=82 Identities=10% Similarity=0.143 Sum_probs=48.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CH-HHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SP-RQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg-~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~ 107 (554)
..-+|||..-...+-..+...|.+.|+.|+.+. +. .++.+.+.....+...+.+|+ -+.+.+ .+++.+.... .
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~~~~~--~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADL--SDIEAIKALVDSAVEEF--G 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCC--CCHHHHHHHHHHHHHHc--C
Confidence 345899999999999999999988999887443 32 234444443321334444454 444443 3555554432 3
Q ss_pred CceEEEEec
Q 008761 108 RIPVIMMSA 116 (554)
Q Consensus 108 ~iPIIVLSs 116 (554)
.+-+|+..+
T Consensus 80 ~~d~li~~a 88 (248)
T TIGR01832 80 HIDILVNNA 88 (248)
T ss_pred CCCEEEECC
Confidence 455665543
No 438
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=30.31 E-value=3.6e+02 Score=25.46 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 44 SSDAVFSLLVKCSYQVTSVRS------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~d------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
+...+...++..|+++..... ..++++.+... .+|.||+-...+... .++..+.. ..+|+|.+...
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~--~~d~ii~~~~~~~~~--~~~~~l~~----~~ip~v~~~~~ 88 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIAR--GVDGIIIAPSDLTAP--TIVKLARK----AGIPVVLVDRD 88 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEecCCCcch--hHHHHhhh----cCCCEEEeccC
Confidence 345556666777888764432 23455555444 689888754433322 24555543 56899888654
No 439
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.29 E-value=3.5e+02 Score=27.17 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=45.3
Q ss_pred HHHhhCCCEEEEECC---HHHHHHHHHhcCCCceEEEEecCCCCCcH-------HHHHHHHHhccC--CCCceEEEEecC
Q 008761 50 SLLVKCSYQVTSVRS---PRQVIDALNAEGSDIDLILAEVDLPMTKG-------LKMLKYITRDKE--LQRIPVIMMSAQ 117 (554)
Q Consensus 50 ~lL~~~g~eV~~A~d---g~EALe~L~~~~~~PDLILLDi~MP~mDG-------lElLr~Ir~~~~--~~~iPIIVLSs~ 117 (554)
..+++.|..+..+-+ ..+.++.+.. ..|.|++=.--|+..| ++-++++++... ...+||.+..+
T Consensus 100 ~~ik~~g~k~GlalnP~Tp~~~i~~~l~---~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGG- 175 (220)
T PRK08883 100 QLIKEHGCQAGVVLNPATPLHHLEYIMD---KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGG- 175 (220)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHH---hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECC-
Confidence 444455655443332 3333333322 3566665344465444 445555554321 12366666444
Q ss_pred CCHHHHHHHHHcCCCEEEeC
Q 008761 118 DEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 118 ~d~e~~~eAL~aGA~DyL~K 137 (554)
-+.+.+.++.++||+.++.=
T Consensus 176 I~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 176 VKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 45778889999999988643
No 440
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=30.27 E-value=2.7e+02 Score=29.13 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=51.2
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEec--CC---C--CCcHHHHHHHHHhccCCCCceEEEEecC-CCHHHHHHHHHcCCC
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEV--DL---P--MTKGLKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAA 132 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi--~M---P--~mDGlElLr~Ir~~~~~~~iPIIVLSs~-~d~e~~~eAL~aGA~ 132 (554)
++.+.++|.+..+.. .+|.+-+-+ .- + ..=|++.|++|++. ..+|+|++.+. ...+.+.++++.|+.
T Consensus 151 s~t~~eea~~f~~~t--g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~---~~iPlV~hG~SGI~~e~~~~~i~~G~~ 225 (281)
T PRK06806 151 LLTSTTEAKRFAEET--DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV---VHIPLVLHGGSGISPEDFKKCIQHGIR 225 (281)
T ss_pred eeCCHHHHHHHHHhh--CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 367899999988654 588888733 11 1 12489999999875 57899999743 456778889999998
Q ss_pred EEE
Q 008761 133 DYL 135 (554)
Q Consensus 133 DyL 135 (554)
.+=
T Consensus 226 kin 228 (281)
T PRK06806 226 KIN 228 (281)
T ss_pred EEE
Confidence 773
No 441
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=30.25 E-value=3.6e+02 Score=27.35 Aligned_cols=51 Identities=12% Similarity=0.296 Sum_probs=37.5
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCC--C----HHHHHHHHHcCCCEEE
Q 008761 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD--E----VSVVVKCLRLGAADYL 135 (554)
Q Consensus 78 ~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~--d----~e~~~eAL~aGA~DyL 135 (554)
..|.|-+... -|++.++++... ..+||+++.+-. + .+.+.+++++||..+.
T Consensus 169 GADyikt~~~----~~~~~l~~~~~~---~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia 225 (258)
T TIGR01949 169 GADIVKTPYT----GDIDSFRDVVKG---CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVA 225 (258)
T ss_pred CCCEEeccCC----CCHHHHHHHHHh---CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 6899998642 368888888764 568998876544 2 5567788899999763
No 442
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=30.22 E-value=3.3e+02 Score=28.32 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=43.4
Q ss_pred cEEEEEeCCH----HHHHHHHHHHhhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 33 VRILLCDNDS----NSSDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 33 irVLIVDDd~----~~r~~L~~lL~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
-+|.|+-++. ...+.++..|++.|.+|+. ..|....+..++.. .||+|++-. .+-+...+++.++
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~--~pd~v~~~~--~~~~~~~~~~~~~ 209 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAA--KPDVVVSTV--NGDSNVAFFKQLK 209 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHh--CCCEEEEec--cCCchHHHHHHHH
Confidence 3565554332 4455566777778887652 22445566666655 799999743 3456788889988
Q ss_pred hcc
Q 008761 102 RDK 104 (554)
Q Consensus 102 ~~~ 104 (554)
...
T Consensus 210 ~~G 212 (348)
T cd06355 210 AAG 212 (348)
T ss_pred HcC
Confidence 764
No 443
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.20 E-value=2.1e+02 Score=25.11 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=52.4
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC--cHHHHHHHHHhccCCCCceEEEEec
Q 008761 39 DNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 39 DDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~m--DGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+......+...|...|..+....+.......+... .+-|++|+ +..++. +-+++++..++ ..+|||.+|.
T Consensus 9 G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~----~g~~vi~iT~ 82 (128)
T cd05014 9 GKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKR----RGAPIIAITG 82 (128)
T ss_pred cHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHH----CCCeEEEEeC
Confidence 3455556677777777787777655543332222221 13355554 344443 35677777665 4689999999
Q ss_pred CCCHHHHHHHHHcCCCEEEeCCC
Q 008761 117 QDEVSVVVKCLRLGAADYLVKPL 139 (554)
Q Consensus 117 ~~d~e~~~eAL~aGA~DyL~KP~ 139 (554)
..+.... ..|+-.|.-|.
T Consensus 83 ~~~s~la-----~~ad~~l~~~~ 100 (128)
T cd05014 83 NPNSTLA-----KLSDVVLDLPV 100 (128)
T ss_pred CCCCchh-----hhCCEEEECCC
Confidence 8765533 24666666553
No 444
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=30.06 E-value=1.3e+02 Score=28.18 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCHHH---------HHHHHHHHhhC-CCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008761 31 SKVRILLCDNDSNS---------SDAVFSLLVKC-SYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (554)
Q Consensus 31 skirVLIVDDd~~~---------r~~L~~lL~~~-g~eV~~A~dg~EALe~L~~~~~~PDLILL 84 (554)
..+.|.|||.|... .+.|.+.|... .+.+.. .+..+|.+.+... +.+.+|.
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g--~~~~~iv 102 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADG--KYYMVIT 102 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcC--cEEEEEE
Confidence 57899999988765 45566666554 355443 3899999999876 6777764
No 445
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=29.96 E-value=2.7e+02 Score=30.62 Aligned_cols=25 Identities=8% Similarity=-0.218 Sum_probs=10.4
Q ss_pred ceEEEEecCCCCCcHHHHHHHHHhc
Q 008761 79 IDLILAEVDLPMTKGLKMLKYITRD 103 (554)
Q Consensus 79 PDLILLDi~MP~mDGlElLr~Ir~~ 103 (554)
||++++.+.....+...+++.+++.
T Consensus 244 ~da~vvv~~~~~~~~~~~l~~a~~~ 268 (472)
T cd06374 244 PKARVVVCFCEGMTVRGLLMAMRRL 268 (472)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHh
Confidence 4544433322233344455554443
No 446
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=29.95 E-value=4.7e+02 Score=26.66 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
++.+++|++... .++|||....-.+.+.+.+++.+||+.+
T Consensus 230 ~~~v~~i~~~~~-~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQ-LDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcC-CCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 566777776420 1789999999889999999999998765
No 447
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=29.90 E-value=4.2e+02 Score=28.71 Aligned_cols=72 Identities=26% Similarity=0.239 Sum_probs=51.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCC-----CCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDL-----PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~M-----P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
...+.++|...+.. ..|.|++.-+- .+...++.+.+|.... ...+|||+-.+-.....+.++|.+||+...
T Consensus 228 gv~~~~dA~~a~~~---G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~-~~~i~vi~dGGIr~g~Di~kaLalGA~~V~ 303 (351)
T cd04737 228 GIQSPEDADVAINA---GADGIWVSNHGGRQLDGGPASFDSLPEIAEAV-NHRVPIIFDSGVRRGEHVFKALASGADAVA 303 (351)
T ss_pred cCCCHHHHHHHHHc---CCCEEEEeCCCCccCCCCchHHHHHHHHHHHh-CCCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 45678888776654 58888874221 1123467778886542 136999999999999999999999999885
Q ss_pred e
Q 008761 136 V 136 (554)
Q Consensus 136 ~ 136 (554)
.
T Consensus 304 i 304 (351)
T cd04737 304 V 304 (351)
T ss_pred E
Confidence 4
No 448
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=29.83 E-value=3e+02 Score=25.44 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCCc----------------HHHHHHHHHhccCCCCceEEEEecCC
Q 008761 78 DIDLILAEVDLPMTK----------------GLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 78 ~PDLILLDi~MP~mD----------------GlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
.||+||+-+-+-+.. -..+++++++.. +.++||++|...
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ii~~t~~~ 117 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLS--PKTKVILITPPP 117 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhC--CCCeEEEeCCCC
Confidence 699999966444332 123566666532 578899888643
No 449
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.82 E-value=1.4e+02 Score=29.52 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=22.2
Q ss_pred HHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 70 DALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 70 e~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
|.|.+. +|||||+....... +....|.+. ..+|+|++...
T Consensus 68 E~i~~l--~PDLIi~~~~~~~~---~~~~~l~~~---~gipvv~~~~~ 107 (262)
T cd01147 68 EKIAAL--KPDVVIDVGSDDPT---SIADDLQKK---TGIPVVVLDGG 107 (262)
T ss_pred HHHHhc--CCCEEEEecCCccc---hhHHHHHHh---hCCCEEEEecC
Confidence 344444 79999986443221 234444332 34688888754
No 450
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.77 E-value=4.1e+02 Score=29.37 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=60.3
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEec-CCCCCc--HHHHHHHHHhccC
Q 008761 32 KVRILLCDN-DSNSSDAVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEV-DLPMTK--GLKMLKYITRDKE 105 (554)
Q Consensus 32 kirVLIVDD-d~~~r~~L~~lL~~~g~eV~~A~--dg~EALe~L~~~~~~PDLILLDi-~MP~mD--GlElLr~Ir~~~~ 105 (554)
.-+||+.+| =.-.+..+..+|.+.|++|..+. +..+.++.+... +.++|+++- .-|-|. -+..+.++-..
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~--~tk~v~lEtPsNP~l~v~DI~~i~~~A~~-- 177 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEP--NTKLVFLETPSNPLLEVPDIPAIARLAKA-- 177 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhccc--CceEEEEeCCCCcccccccHHHHHHHHHh--
Confidence 357888887 34456667778888899988666 455666666532 589999976 223222 23334444332
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 106 ~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.. .+|||=..-......+.|.+||+-.+
T Consensus 178 -~g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 178 -YG-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred -cC-CEEEEECCcccccccChhhcCCCEEE
Confidence 22 45555444444567789999988764
No 451
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=29.66 E-value=1.4e+02 Score=33.20 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=62.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhc
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~ 103 (554)
.++...|||+.-.....+.+.+.|.+.||.|. .+.+...+.+++... .-|..+.++..+...+.+.+..+...
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~--~~d~~~~~v~~~~~~~~d~~~~~~~~ 149 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVF--FVDLGLQNVEADVVTAIDILKKLVEA 149 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhccc--ccccccceeeeccccccchhhhhhhh
Confidence 34568999999999999999999999999887 788999999988722 57888999999999999999888765
No 452
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=29.58 E-value=3.1e+02 Score=28.52 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=33.6
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
++.+.+|++.. ...+|||...+-.+.+.+.+++.+||+...
T Consensus 239 l~~v~~~~~~~-~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAP-EPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67888887642 137999999999999999999999998764
No 453
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=29.56 E-value=3.5e+02 Score=29.06 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=57.2
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC-CCC--------CcHHHHHHHHHhccCCCC-ceEEEEec
Q 008761 48 VFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD-LPM--------TKGLKMLKYITRDKELQR-IPVIMMSA 116 (554)
Q Consensus 48 L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~-MP~--------mDGlElLr~Ir~~~~~~~-iPIIVLSs 116 (554)
....|...|..|. .+.+.++|....+. ..|.||..-. -.+ ...+.|+.++... .. +|||.=-+
T Consensus 119 ~i~~~~~~g~~v~~~v~~~~~A~~~~~~---G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~---~~~iPViAAGG 192 (336)
T COG2070 119 FVARLKAAGIKVIHSVITVREALKAERA---GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDA---VDGIPVIAAGG 192 (336)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHHhC---CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHH---hcCCCEEEecC
Confidence 3344445565444 77788888887654 4677776542 222 2347888888875 45 89998888
Q ss_pred CCCHHHHHHHHHcCCCEE
Q 008761 117 QDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 117 ~~d~e~~~eAL~aGA~Dy 134 (554)
-.+...+..||.+||+..
T Consensus 193 I~dg~~i~AAlalGA~gV 210 (336)
T COG2070 193 IADGRGIAAALALGADGV 210 (336)
T ss_pred ccChHHHHHHHHhccHHH
Confidence 899999999999999774
No 454
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=29.55 E-value=80 Score=35.99 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=36.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEe
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSP---RQVIDALNAEGSDIDLILAE 85 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg---~EALe~L~~~~~~PDLILLD 85 (554)
.+|||||....+-..|.+.|+..|++|.+..+- ...++.+... .||.||+-
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~--~~~~IIlS 55 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATM--SNPVLMLS 55 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhc--CcCEEEEc
Confidence 489999999999999999999988877655432 2234444433 57777764
No 455
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.55 E-value=5.6e+02 Score=26.88 Aligned_cols=67 Identities=12% Similarity=-0.075 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 44 SSDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
....+...++..|++|+. ..|....+..++.. .||+|++-.. .-+...+++.+++.. ...+|+..+.
T Consensus 156 ~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~--~pd~V~~~~~--~~~~~~~~~~~~~~G--~~~~~~~~~~ 229 (351)
T cd06334 156 PIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRS--GPDYVILWGW--GVMNPVAIKEAKRVG--LDDKFIGNWW 229 (351)
T ss_pred hHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHc--CCCEEEEecc--cchHHHHHHHHHHcC--CCceEEEeec
Confidence 344566677777887652 13566777777765 7999997433 347888999998765 3455554433
No 456
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=29.53 E-value=4.1e+02 Score=24.16 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=20.9
Q ss_pred CceEEEEecCCCCC----cH-------HHHHHHHHhccCCCCceEEEEec
Q 008761 78 DIDLILAEVDLPMT----KG-------LKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 78 ~PDLILLDi~MP~m----DG-------lElLr~Ir~~~~~~~iPIIVLSs 116 (554)
+||+|++-+..-+. +- .++++.+++ ...+||+++.
T Consensus 64 ~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~----~~~~vil~~~ 109 (177)
T cd01822 64 KPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQA----RGAPVLLVGM 109 (177)
T ss_pred CCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHH----CCCeEEEEec
Confidence 79999997765442 11 234555543 2567777764
No 457
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=29.51 E-value=3.9e+02 Score=25.31 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=35.0
Q ss_pred HHHHHHhhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 47 AVFSLLVKCSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 47 ~L~~lL~~~g~eV~~A~d---g---~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
.+...+...|+.+..... . .++++.+... ++|.|++....+ +... ++.+.. ..+|||.+...
T Consensus 20 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iii~~~~~--~~~~-~~~~~~----~~ipvv~~~~~ 87 (264)
T cd06267 20 GIEEAAREAGYSVLLCNSDEDPEKEREALELLLSR--RVDGIILAPSRL--DDEL-LEELAA----LGIPVVLVDRP 87 (264)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHc--CcCEEEEecCCc--chHH-HHHHHH----cCCCEEEeccc
Confidence 344444556887664332 2 3455555544 799888854433 2333 555543 56899888653
No 458
>PRK00654 glgA glycogen synthase; Provisional
Probab=29.51 E-value=6.3e+02 Score=27.67 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=59.8
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 32 KVRILLCDND-SNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 32 kirVLIVDDd-~~~r~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.++++|+.+- +.....|..+....+..|. ..-+.+.+-..+. ..|++++--. -+.-|+.+++.+. ..
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~----~aDv~v~PS~-~E~~gl~~lEAma-----~G 380 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA----GADMFLMPSR-FEPCGLTQLYALR-----YG 380 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh----hCCEEEeCCC-CCCchHHHHHHHH-----CC
Confidence 4667777653 3345556666555543332 2223222323333 3577776422 3445677776654 34
Q ss_pred ceEEEEecCCCHHHHHHHHHcC------CCEEEeCCCCHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLG------AADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aG------A~DyL~KP~~~eeL~~~L~~llr 153 (554)
+|+|+ |...... +.+..| ..+|+..|.+.++|...+..++.
T Consensus 381 ~p~V~-~~~gG~~---e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 381 TLPIV-RRTGGLA---DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred CCEEE-eCCCCcc---ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 56654 4332211 122334 67899999999999988888764
No 459
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=29.49 E-value=4.2e+02 Score=29.27 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=26.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHHHhc-CCCceEEEEec
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAE-GSDIDLILAEV 86 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g-~eV~~A~dg~EALe~L~~~-~~~PDLILLDi 86 (554)
.+|||+.- -.+...+...|.+.+ ++|..|+-..+..+.+... ..+...+.+|+
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~ 56 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDA 56 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecc
Confidence 45666665 444555555555544 6666555443333333222 12455555554
No 460
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=29.49 E-value=6.5e+02 Score=25.97 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=64.0
Q ss_pred CcEEEEEeCCH-------HHHHHHHHHHhh-CCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 32 KVRILLCDNDS-------NSSDAVFSLLVK-CSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 32 kirVLIVDDd~-------~~r~~L~~lL~~-~g~--eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
.++++|+.+-+ .....|..++.. .+. .|.... +..+..+.+. ..|++++-... ..-|+.+++.
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~----~ad~~l~~s~~-E~~g~~~lEA 319 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLS----SARALLYTPSN-EHFGIVPLEA 319 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHh----hCeEEEECCCc-CCCCchHHHH
Confidence 67888887532 223556666655 443 344332 3444455554 35888874332 2236666666
Q ss_pred HHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 100 ITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 100 Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+. ..+|||..- ... ..+.+.-|..+|+..+ +.+++.+.+..++..
T Consensus 320 ma-----~G~PvI~s~-~~~---~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 320 MY-----AGKPVIACN-SGG---PLETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred HH-----cCCCEEEEC-CCC---cHHHhccCCceEEeCC-CHHHHHHHHHHHHhC
Confidence 64 567887643 222 2234556777888866 888998888887754
No 461
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.45 E-value=3.8e+02 Score=26.14 Aligned_cols=63 Identities=10% Similarity=0.283 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~---dg---~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+.+.+++.||.+.... +. ..+++.+... .+|-||+-... .+.-.+++.+++ ..+|||++-.
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgii~~~~~--~~~~~~~~~~~~----~~ipvV~i~~ 87 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQR--RMDGIIIAPGD--ERDPELVDALAS----LDLPIVLLDR 87 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHc--CCCEEEEecCC--CCcHHHHHHHHh----CCCCEEEEec
Confidence 445556667788876432 22 3455566554 68888874322 223345666654 3578888853
No 462
>PRK10867 signal recognition particle protein; Provisional
Probab=29.40 E-value=5.9e+02 Score=28.42 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=41.4
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHhhCCCEEEEE---CCHHH----HHHHHHhcCCCceEEEEecC--CCC-CcHHHHHH
Q 008761 32 KVRILLCDNDSNS---SDAVFSLLVKCSYQVTSV---RSPRQ----VIDALNAEGSDIDLILAEVD--LPM-TKGLKMLK 98 (554)
Q Consensus 32 kirVLIVDDd~~~---r~~L~~lL~~~g~eV~~A---~dg~E----ALe~L~~~~~~PDLILLDi~--MP~-mDGlElLr 98 (554)
..+|+||+-|..- .+.|..+....|..+... .++.+ +++.+... .+|+||+|.- ++. -..++-+.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~--~~DvVIIDTaGrl~~d~~lm~eL~ 206 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKEN--GYDVVIVDTAGRLHIDEELMDELK 206 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcccCHHHHHHHH
Confidence 4689998877422 223333344556655533 24433 33333333 6899999973 321 22344444
Q ss_pred HHHhccCCCCceEEEEecCC
Q 008761 99 YITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~ 118 (554)
.|.... .+.--++|+.+..
T Consensus 207 ~i~~~v-~p~evllVlda~~ 225 (433)
T PRK10867 207 AIKAAV-NPDEILLVVDAMT 225 (433)
T ss_pred HHHHhh-CCCeEEEEEeccc
Confidence 444321 1222245555543
No 463
>PRK08862 short chain dehydrogenase; Provisional
Probab=29.38 E-value=4.8e+02 Score=25.57 Aligned_cols=83 Identities=7% Similarity=0.037 Sum_probs=51.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHH----HHHhcCCCceEEEEecCCCCCcHHH-HHHHHHhcc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVID----ALNAEGSDIDLILAEVDLPMTKGLK-MLKYITRDK 104 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe----~L~~~~~~PDLILLDi~MP~mDGlE-lLr~Ir~~~ 104 (554)
++...+||..-..-+-..+...|.+.|+.|..+..-.+.++ .+... ..+++...+...+.+.++ +++.+.+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL--TDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34458999999999999999999999998876543333333 33332 234555544444555554 556665432
Q ss_pred CCC-CceEEEEec
Q 008761 105 ELQ-RIPVIMMSA 116 (554)
Q Consensus 105 ~~~-~iPIIVLSs 116 (554)
. .+-+++..+
T Consensus 81 --g~~iD~li~na 91 (227)
T PRK08862 81 --NRAPDVLVNNW 91 (227)
T ss_pred --CCCCCEEEECC
Confidence 3 466666654
No 464
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=29.35 E-value=5.1e+02 Score=27.70 Aligned_cols=67 Identities=12% Similarity=0.253 Sum_probs=36.7
Q ss_pred EEEEEeCCHHHHHHHHHHH---hhCCCEEEE-----EC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhc
Q 008761 34 RILLCDNDSNSSDAVFSLL---VKCSYQVTS-----VR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL---~~~g~eV~~-----A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~ 103 (554)
+|.|+-|+..-...|..++ +..|.+|.. +. +....|..++.. .+|+||+|+.- .....+++++++.
T Consensus 126 ~vaiiYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~--~~~~iil~~~~--~~~~~il~qa~~~ 201 (371)
T cd06388 126 RFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDRR--QEKKFVIDCEI--ERLQNILEQIVSV 201 (371)
T ss_pred EEEEEecCCccHHHHHHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhccc--ccEEEEEECCH--HHHHHHHHHHHhc
Confidence 4555544222223344444 445665542 21 333444444443 79999998754 3467888888876
Q ss_pred c
Q 008761 104 K 104 (554)
Q Consensus 104 ~ 104 (554)
.
T Consensus 202 g 202 (371)
T cd06388 202 G 202 (371)
T ss_pred C
Confidence 5
No 465
>PRK05693 short chain dehydrogenase; Provisional
Probab=29.31 E-value=3.4e+02 Score=26.89 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=48.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCceE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPV 111 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg~EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iPI 111 (554)
+|||..-...+...+...|.+.|+.|+.. .+.. .++.+... ....+.+|+.- .+. -++++.+.+.. ..+-+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~-~~~~~~~~--~~~~~~~Dl~~--~~~~~~~~~~~~~~~--~~id~ 75 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAE-DVEALAAA--GFTAVQLDVND--GAALARLAEELEAEH--GGLDV 75 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHC--CCeEEEeeCCC--HHHHHHHHHHHHHhc--CCCCE
Confidence 68999999999999999998889988744 4444 44444433 45666677643 223 34555554432 45666
Q ss_pred EEEec
Q 008761 112 IMMSA 116 (554)
Q Consensus 112 IVLSs 116 (554)
|+..+
T Consensus 76 vi~~a 80 (274)
T PRK05693 76 LINNA 80 (274)
T ss_pred EEECC
Confidence 66654
No 466
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.29 E-value=5.1e+02 Score=28.80 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=40.6
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEecC--CC-CCcHHHHHH
Q 008761 32 KVRILLCDNDSN---SSDAVFSLLVKCSYQVTSVR---SP----RQVIDALNAEGSDIDLILAEVD--LP-MTKGLKMLK 98 (554)
Q Consensus 32 kirVLIVDDd~~---~r~~L~~lL~~~g~eV~~A~---dg----~EALe~L~~~~~~PDLILLDi~--MP-~mDGlElLr 98 (554)
..+|++|+-|.. ..+.|..+-...|..+..+. ++ .++++.+... .+|+||+|.- ++ +...++-+.
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTaGr~~~d~~l~~eL~ 205 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTAGRLQIDEELMEELA 205 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccccCHHHHHHHH
Confidence 468888887742 22333343344455444332 33 2344444433 6899999973 22 122444444
Q ss_pred HHHhccCCCCceEEEEecC
Q 008761 99 YITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~ 117 (554)
.+.... .+.--++|+.+.
T Consensus 206 ~i~~~~-~p~e~lLVvda~ 223 (428)
T TIGR00959 206 AIKEIL-NPDEILLVVDAM 223 (428)
T ss_pred HHHHhh-CCceEEEEEecc
Confidence 444422 122234455543
No 467
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=29.28 E-value=5.1e+02 Score=27.84 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCc-eEEEEecCC-----CCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCC
Q 008761 66 RQVIDALNAEGSDI-DLILAEVDL-----PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139 (554)
Q Consensus 66 ~EALe~L~~~~~~P-DLILLDi~M-----P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~ 139 (554)
..|++.+...+... +|+||-+.. +..-.+..+..|++. .++||.+-+...+......|..+||. +|.|-|
T Consensus 149 ~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~---f~~pVG~SdHt~G~~~~~aAvalGA~-iIEkH~ 224 (329)
T TIGR03569 149 EAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEA---FDLPVGYSDHTLGIEAPIAAVALGAT-VIEKHF 224 (329)
T ss_pred HHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHH---hCCCEEECCCCccHHHHHHHHHcCCC-EEEeCC
Q ss_pred C---------------HHHHHHHHHHHHHHHHHhh
Q 008761 140 R---------------TNELLNLWTHMWRRRRMLG 159 (554)
Q Consensus 140 ~---------------~eeL~~~L~~llr~~rl~~ 159 (554)
+ +++|...++.+-.-...++
T Consensus 225 tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG 259 (329)
T TIGR03569 225 TLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALG 259 (329)
T ss_pred ChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcC
No 468
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=29.24 E-value=1.7e+02 Score=31.48 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHH
Q 008761 33 VRILLCDNDSNSS-----DAVFSLLVKCSYQVTSVRS---------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLK 98 (554)
Q Consensus 33 irVLIVDDd~~~r-----~~L~~lL~~~g~eV~~A~d---------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr 98 (554)
-|+|||-|..... ..+...|+..|+++..+.. .+++++.+++. ++|+||- +.|.+-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREF--EPDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCccHHHHHH
Confidence 3788888766544 5677777776766654432 45666666655 6787763 44555555555
Q ss_pred HH
Q 008761 99 YI 100 (554)
Q Consensus 99 ~I 100 (554)
.|
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 54
No 469
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=29.16 E-value=3.4e+02 Score=26.46 Aligned_cols=67 Identities=16% Similarity=0.319 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCc--HHHHHHHHHhccCCCCceEEEEe
Q 008761 44 SSDAVFSLLVKCSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMTK--GLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~d---g---~EALe~L~~~~~~PDLILLDi~MP~mD--GlElLr~Ir~~~~~~~iPIIVLS 115 (554)
+...+.+.+++.||.+..... . .++++.+... .+|.||+--..+... ..+.++.+.. ..+|||++-
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgii~~~~~~~~~~~~~~~~~~~~~----~~ipvV~~~ 90 (273)
T cd01541 17 IIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQ--GIDGLIIEPTKSALPNPNIDLYLKLEK----LGIPYVFIN 90 (273)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeccccccccccHHHHHHHHH----CCCCEEEEe
Confidence 344455666677898775432 2 3455566555 799999743222111 2245566643 457888875
Q ss_pred c
Q 008761 116 A 116 (554)
Q Consensus 116 s 116 (554)
.
T Consensus 91 ~ 91 (273)
T cd01541 91 A 91 (273)
T ss_pred c
Confidence 3
No 470
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=29.16 E-value=2.9e+02 Score=28.85 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=48.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcH--HHHHHHHHhccCCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG--LKMLKYITRDKELQR 108 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~e-V~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDG--lElLr~Ir~~~~~~~ 108 (554)
.+|+-||-++...+...+-+...+.. +. ...+..+..... ...+|+|++| |.-.| -++++.|.... .
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~---~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~---~ 266 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ---GEVPDLVLVN---PPRRGIGKELCDYLSQMA---P 266 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc---CCCCeEEEEC---CCCCCccHHHHHHHHHcC---C
Confidence 58999999999998888877766652 33 456666554321 1268999999 33344 36667776532 2
Q ss_pred ceEEEEecC
Q 008761 109 IPVIMMSAQ 117 (554)
Q Consensus 109 iPIIVLSs~ 117 (554)
-.||.+|..
T Consensus 267 ~~ivyvsc~ 275 (315)
T PRK03522 267 RFILYSSCN 275 (315)
T ss_pred CeEEEEECC
Confidence 345555543
No 471
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=29.16 E-value=2e+02 Score=27.00 Aligned_cols=63 Identities=27% Similarity=0.409 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE-EEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 68 VIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI-MMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 68 ALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII-VLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
..+.|++. +||+||+=.-++..=. +..++.......+|++ ++|...... ..-+.-|++-|++-
T Consensus 81 l~~~l~~~--~PD~IIsThp~~~~~~---l~~lk~~~~~~~~p~~tvvTD~~~~H--~~W~~~~~D~y~Va 144 (169)
T PF06925_consen 81 LIRLLREF--QPDLIISTHPFPAQVP---LSRLKRRGRLPNIPVVTVVTDFDTVH--PFWIHPGVDRYFVA 144 (169)
T ss_pred HHHHHhhc--CCCEEEECCcchhhhH---HHHHHHhhcccCCcEEEEEcCCCCCC--cCeecCCCCEEEEC
Confidence 34444444 8999999887764222 4444444433467866 667653211 22456678888763
No 472
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=29.13 E-value=3.3e+02 Score=27.97 Aligned_cols=57 Identities=7% Similarity=0.090 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCEEEE---E------CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 44 SSDAVFSLLVKCSYQVTS---V------RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~---A------~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
..+.+...|+..|.+|.. . .+....+..++.. .||+|++... ..+...+++.+++..
T Consensus 151 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~dvvi~~~~--~~~~~~~~~~a~~~g 216 (350)
T cd06366 151 GLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEK--DSRVIVVHFS--PDLARRVFCEAYKLG 216 (350)
T ss_pred hHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcC--CCeEEEEECC--hHHHHHHHHHHHHcC
Confidence 345566667777776542 1 2344555555543 6888887654 346777888877754
No 473
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=29.13 E-value=4.3e+02 Score=25.50 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=48.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHH---HHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVI---DALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EAL---e~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~ 106 (554)
.-+|||...+..+...|...|...|++|.. ..+..... ..+.....++.++.+|+. +.+.+ ++++.+....
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~~~~~~~~~~-- 79 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVT--DEEAINAGIDYAVETF-- 79 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC--CHHHHHHHHHHHHHHc--
Confidence 458999999999999999988888998874 44443322 223222223455566653 44443 4556665432
Q ss_pred CCceEEEEec
Q 008761 107 QRIPVIMMSA 116 (554)
Q Consensus 107 ~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 80 ~~~d~vi~~a 89 (258)
T PRK12429 80 GGVDILVNNA 89 (258)
T ss_pred CCCCEEEECC
Confidence 3455665544
No 474
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=29.06 E-value=4.3e+02 Score=28.00 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=38.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-----EECCHHHHHHHHHhcCCCceEEEEe
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-----SVRSPRQVIDALNAEGSDIDLILAE 85 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-----~A~dg~EALe~L~~~~~~PDLILLD 85 (554)
+-+||=+|.|+..++.-..+-++.|..+. ...-++...++|... +||++++=
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--~PDIlViT 161 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY--RPDILVIT 161 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc--CCCEEEEe
Confidence 67999999999988877777777776544 222355566677666 89999873
No 475
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=29.00 E-value=7.5e+02 Score=26.58 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=66.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCC----cHHHHHHHHHhc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMT----KGLKMLKYITRD 103 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e-V~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~m----DGlElLr~Ir~~ 103 (554)
.++.+||.|-+ .+..|.+.++..+.+ +... -..++..+.+.. .|+.++ . .+.. =+..+++.+.
T Consensus 269 ~i~l~ivG~G~-~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~-~-~~~~~~~~~p~~~~Eama-- 339 (415)
T cd03816 269 KLLCIITGKGP-LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVS-L-HTSSSGLDLPMKVVDMFG-- 339 (415)
T ss_pred CEEEEEEecCc-cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEE-c-cccccccCCcHHHHHHHH--
Confidence 47888888765 367788888777653 4433 245666666653 587764 1 1111 1445665543
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
..+|||. |.... ..+.+..|..+++.. +.++|.+.|..++..
T Consensus 340 ---~G~PVI~-s~~~~---~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 340 ---CGLPVCA-LDFKC---IDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred ---cCCCEEE-eCCCC---HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 5689986 43333 335666788889883 788999988888765
No 476
>PRK10742 putative methyltransferase; Provisional
Probab=28.97 E-value=2.4e+02 Score=29.31 Aligned_cols=57 Identities=7% Similarity=0.086 Sum_probs=41.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC------CC----EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC------SY----QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~------g~----eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~m 91 (554)
.-+|..||-++.+...|..-|... +. ++. ...+..+.+..+ ...+|||.+|-.-|.-
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEECCCCCCC
Confidence 346999999999999999999863 21 222 345666666543 2269999999988863
No 477
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=28.86 E-value=4.2e+02 Score=26.80 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=53.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCc--HHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK--GLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mD--GlElLr~Ir~~~~~~~i 109 (554)
++-|+=+..+..+...+...|...|..+....+.......+.... +-|++|+ +...+.+ -+++++..+. ..+
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~-~~Dv~I~-iS~sg~~~~~~~~~~~ak~----~ga 203 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALS-PDDLLLA-ISYSGERRELNLAADEALR----VGA 203 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCC-CCCEEEE-EcCCCCCHHHHHHHHHHHH----cCC
Confidence 344444556666777777778788888877666655444444332 4576554 4445543 3566666665 568
Q ss_pred eEEEEecCCCHHH
Q 008761 110 PVIMMSAQDEVSV 122 (554)
Q Consensus 110 PIIVLSs~~d~e~ 122 (554)
+||+||.......
T Consensus 204 ~iI~IT~~~~s~l 216 (278)
T PRK11557 204 KVLAITGFTPNAL 216 (278)
T ss_pred CEEEEcCCCCCch
Confidence 9999999766543
No 478
>PRK06172 short chain dehydrogenase; Provisional
Probab=28.82 E-value=4.6e+02 Score=25.46 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=49.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHH---HHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EA---Le~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~ 105 (554)
...+|||..-...+...+...|.+.|++|. ...+.+.. .+.+.....++..+.+|+. +.+.+ ++++.+....
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~i~~~~~~~~~~~- 82 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVT--RDAEVKALVEQTIAAY- 82 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC--CHHHHHHHHHHHHHHh-
Confidence 346899999999999999999988898877 44454432 3333332223445555653 33333 3555555432
Q ss_pred CCCceEEEEec
Q 008761 106 LQRIPVIMMSA 116 (554)
Q Consensus 106 ~~~iPIIVLSs 116 (554)
..+.+|+..+
T Consensus 83 -g~id~li~~a 92 (253)
T PRK06172 83 -GRLDYAFNNA 92 (253)
T ss_pred -CCCCEEEECC
Confidence 4566666554
No 479
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=28.74 E-value=5.5e+02 Score=24.94 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCceEEEEecCC----C-CCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHc-CCCEE
Q 008761 67 QVIDALNAEGSDIDLILAEVDL----P-MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL-GAADY 134 (554)
Q Consensus 67 EALe~L~~~~~~PDLILLDi~M----P-~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~a-GA~Dy 134 (554)
+.++.+... ..|.|.+.-.. + +.-.++.++.|++. ..+||+....-.+.+.+.+++.. ||+.+
T Consensus 142 ~~~~~l~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~---~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 142 ELAKALEDA--GASALTVHGRTREQRYSGPADWDYIAEIKEA---VSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred HHHHHHHHh--CCCEEEECCCCHHHcCCCCCCHHHHHHHHhC---CCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 344444443 57777664432 1 22357888888864 57899988888888899999998 67665
No 480
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=28.71 E-value=3.5e+02 Score=29.51 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC-------------CcHHHHHHHHHhc----cCCCCceEEEEecCCCHHHHHHH
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPM-------------TKGLKMLKYITRD----KELQRIPVIMMSAQDEVSVVVKC 126 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~-------------mDGlElLr~Ir~~----~~~~~iPIIVLSs~~d~e~~~eA 126 (554)
+..++...+... .+|.|++|-.-.+ +.-+.+|..+... .....+|||+-..-.+...+.+|
T Consensus 226 ~~~~~a~~~~~~--g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~ka 303 (392)
T cd02808 226 GEGDIAAGVAAA--GADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKA 303 (392)
T ss_pred CHHHHHHHHHHc--CCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHH
Confidence 566777776654 4999999876432 2333444444321 11246899988888889999999
Q ss_pred HHcCCCEE
Q 008761 127 LRLGAADY 134 (554)
Q Consensus 127 L~aGA~Dy 134 (554)
|.+||+.+
T Consensus 304 laLGAd~V 311 (392)
T cd02808 304 LALGADAV 311 (392)
T ss_pred HHcCCCee
Confidence 99999887
No 481
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=28.65 E-value=3.2e+02 Score=29.14 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=39.6
Q ss_pred cEEEEEeCCHHHH----HHHHHHHhhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 33 VRILLCDNDSNSS----DAVFSLLVKCSYQVTSVR---------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 33 irVLIVDDd~~~r----~~L~~lL~~~g~eV~~A~---------dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
-++|||-|..... ..+...|...|+++..+. +..++++.++.. .+|+||- +.+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE--GCDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 4889998765443 467777777676555432 245666666655 7898873 455555665555
Q ss_pred H
Q 008761 100 I 100 (554)
Q Consensus 100 I 100 (554)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 4
No 482
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.58 E-value=3e+02 Score=30.70 Aligned_cols=97 Identities=21% Similarity=0.176 Sum_probs=57.0
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCc----HHHHH---HHHHhccCCCCceE
Q 008761 39 DNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK----GLKML---KYITRDKELQRIPV 111 (554)
Q Consensus 39 DDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mD----GlElL---r~Ir~~~~~~~iPI 111 (554)
-=+..-.+.|...|...||++..- .. ..|+|++...-.-.+ -...+ +++++.. +..+
T Consensus 34 ~~N~~dse~~~~~l~~~G~~~~~~-----------~~--~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~--p~~~- 97 (467)
T PRK14329 34 QMNFADSEIVASILQMAGYNTTEN-----------LE--EADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKN--PKLI- 97 (467)
T ss_pred CCcHHHHHHHHHHHHHCcCEECCC-----------cc--cCCEEEEeCcceechHHHHHHHHHHHHHHHHhhC--CCcE-
Confidence 356666778888998889986541 11 579999987655422 22333 4444432 4444
Q ss_pred EEEecCCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRL-GAADYLVKPLRTNELLNLWTHM 151 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~a-GA~DyL~KP~~~eeL~~~L~~l 151 (554)
|++++.-....-.+.++. +..|++..+-....|...+..+
T Consensus 98 ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~ 138 (467)
T PRK14329 98 VGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEV 138 (467)
T ss_pred EEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHH
Confidence 455543221122334444 4489999888777777666543
No 483
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.52 E-value=3.8e+02 Score=28.19 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=52.6
Q ss_pred CCcEEEEEe--CCHH---HHHHHHHHHhhCCCEEEEECCHHHHH--HHH-HhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 31 SKVRILLCD--NDSN---SSDAVFSLLVKCSYQVTSVRSPRQVI--DAL-NAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 31 skirVLIVD--Dd~~---~r~~L~~lL~~~g~eV~~A~dg~EAL--e~L-~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
++.+|+||- .... ....+.+.|.+.|++|.......+.. ..+ ......+|+|++= +.||- +++.++.
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~----GGDGT-~l~~~~~ 76 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVL----GGDGT-VLAAARH 76 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEE----CCcHH-HHHHHHH
Confidence 344576663 2222 34455666777899877544322211 111 1111257888872 66772 3444443
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR-TNELLNLWTHMWR 153 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~-~eeL~~~L~~llr 153 (554)
.. ...+||+.+.. -|-..||.-... .++ ...++.+++
T Consensus 77 ~~-~~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~ 114 (305)
T PRK02645 77 LA-PHDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQE 114 (305)
T ss_pred hc-cCCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHc
Confidence 21 25788887765 245678885421 222 445555543
No 484
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.50 E-value=1.4e+02 Score=29.04 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=34.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILL 84 (554)
++|+|||-.......+.+.|+..|+++....+..+ + . .+|.|++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~--~--~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I--L--DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H--c--cCCEEEE
Confidence 48999999888889999999999998887765421 2 1 4788887
No 485
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.41 E-value=1.6e+02 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=20.9
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 78 ~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
+|||||..-.... -++++.|.+ ..+|++++..
T Consensus 69 ~PDlii~~~~~~~---~~~~~~l~~----~gIpvv~i~~ 100 (186)
T cd01141 69 KPDLVILYGGFQA---QTILDKLEQ----LGIPVLYVNE 100 (186)
T ss_pred CCCEEEEecCCCc---hhHHHHHHH----cCCCEEEeCC
Confidence 7999998543221 146677765 4589988864
No 486
>PRK08999 hypothetical protein; Provisional
Probab=28.38 E-value=2.8e+02 Score=28.71 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=49.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCE
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~MP~-------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~D 133 (554)
++.+.+++.+... . .+|.|++.--.+. .-|++.++++.+. ..+||+.+.+- +.+.+.+++++||+.
T Consensus 232 S~h~~~~~~~a~~-~--~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~---~~~Pv~AiGGI-~~~~~~~~~~~g~~g 304 (312)
T PRK08999 232 SCHDAEELARAQR-L--GVDFAVLSPVQPTASHPGAAPLGWEGFAALIAG---VPLPVYALGGL-GPGDLEEAREHGAQG 304 (312)
T ss_pred ecCCHHHHHHHHh-c--CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHhCCCE
Confidence 6778887766543 3 5899988764431 2478888888764 57899999875 667788899999988
Q ss_pred E
Q 008761 134 Y 134 (554)
Q Consensus 134 y 134 (554)
+
T Consensus 305 v 305 (312)
T PRK08999 305 I 305 (312)
T ss_pred E
Confidence 6
No 487
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=28.38 E-value=3.8e+02 Score=29.09 Aligned_cols=93 Identities=13% Similarity=0.207 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC----cHHHHHHHHHhccCCCCceEEEEec
Q 008761 41 DSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT----KGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 41 d~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~m----DGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
+..-.+.+...|...||+..... . .+|||++...-... ..+++++++++.. +.++|||-..
T Consensus 9 N~~ds~~~~~~l~~~g~~~~~~~-----------~--~aD~v~intctv~~~a~~~~~~~i~~~k~~~--p~~~vvvgGc 73 (414)
T TIGR01579 9 NQYESESLKNQLIQKGYEVVPDE-----------D--KADVYIINTCTVTAKADSKARRAIRRARRQN--PTAKIIVTGC 73 (414)
T ss_pred CHHHHHHHHHHHHHCcCEECCCc-----------c--cCCEEEEeccccchHHHHHHHHHHHHHHhhC--CCcEEEEECC
Confidence 34455678888888898765321 1 58999998765543 3688888887653 4555554433
Q ss_pred CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008761 117 QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (554)
Q Consensus 117 ~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~ 149 (554)
+.. ..-.++++....|++.-+-....+...+.
T Consensus 74 ~a~-~~~ee~~~~~~vD~vv~~e~~~~~~~ll~ 105 (414)
T TIGR01579 74 YAQ-SNPKELADLKDVDLVLGNKEKDKINKLLS 105 (414)
T ss_pred ccc-cCHHHHhcCCCCcEEECCCCHHHHHHHHH
Confidence 332 22233456667888888877666665554
No 488
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.26 E-value=6.3e+02 Score=26.04 Aligned_cols=56 Identities=7% Similarity=0.038 Sum_probs=36.3
Q ss_pred HHHHHHHHhhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 45 SDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
.+.+.+.++..|++|.. ..+-...+..++.. .||+|++-. ...+...+++.+++..
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~--~~d~v~~~~--~~~~~~~~~~~~~~~g 223 (362)
T cd06343 161 LKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAA--GADVVVLAT--TPKFAAQAIRKAAELG 223 (362)
T ss_pred HHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhc--CCCEEEEEc--CcHHHHHHHHHHHHcC
Confidence 33455566667876541 12445666666655 799999854 3456788899988764
No 489
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=28.21 E-value=70 Score=31.01 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=33.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCH-HHHHHHHHhcCCCceEEEEe
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSP-RQVIDALNAEGSDIDLILAE 85 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg-~EALe~L~~~~~~PDLILLD 85 (554)
|||||..-.+-..|.++|.+.|+.+...... .+. ..+... .||.|++-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~--~~~~iils 50 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDI-DGIEAL--NPTHLVIS 50 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCH-HHHhhC--CCCEEEEe
Confidence 8999999999999999999999877654422 122 223333 57777664
No 490
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=28.20 E-value=2.9e+02 Score=27.95 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=48.5
Q ss_pred HHhhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEec-C--CCCCcHHHHHHHHHhccCCCC-ceEEEEecCCCHHHHH
Q 008761 51 LLVKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEV-D--LPMTKGLKMLKYITRDKELQR-IPVIMMSAQDEVSVVV 124 (554)
Q Consensus 51 lL~~~g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi-~--MP~mDGlElLr~Ir~~~~~~~-iPIIVLSs~~d~e~~~ 124 (554)
.|...|+.| ..+-+..+|+-.... ..+.|--=+ + --+.||+++++.+........ -.-|+..+..+...+.
T Consensus 98 ~L~~~GI~vn~T~vfs~~Qa~~Aa~a---Ga~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~ 174 (220)
T PRK12653 98 MLKAEGIPTLGTAVYGAAQGLLSALA---GAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQAL 174 (220)
T ss_pred HHHHcCCCeeEEEecCHHHHHHHHhc---CCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHH
Confidence 444555433 244456666544433 233332211 1 136689999988876542222 2344455667778888
Q ss_pred HHHHcCCCEEEeCC
Q 008761 125 KCLRLGAADYLVKP 138 (554)
Q Consensus 125 eAL~aGA~DyL~KP 138 (554)
+++.+|++-+-.-|
T Consensus 175 ~~~~~G~d~vTip~ 188 (220)
T PRK12653 175 DCLLAGCESITLPL 188 (220)
T ss_pred HHHHcCCCEEECCH
Confidence 89999998876644
No 491
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=28.17 E-value=4.2e+02 Score=28.04 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC-------CCCHHHHHHHHHHHHHH
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK-------PLRTNELLNLWTHMWRR 154 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K-------P~~~eeL~~~L~~llr~ 154 (554)
++.+.++.+. ..+|||.+.+-.+.+.+.+.+.+||+..-.= |.-..++...|...+..
T Consensus 226 l~~v~~v~~~---~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~ 290 (325)
T cd04739 226 LRWIAILSGR---VKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEE 290 (325)
T ss_pred HHHHHHHHcc---cCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHH
Confidence 3455555542 4799999999999999999999999887322 43345555555555443
No 492
>PLN02366 spermidine synthase
Probab=28.13 E-value=3.7e+02 Score=28.44 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=43.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC--C---CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCc-----HHHHHHHHH
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKC--S---YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK-----GLKMLKYIT 101 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~--g---~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mD-----GlElLr~Ir 101 (554)
.+|.+||=++.+.+..++.+... + -.|. ...|+.+.++.... .++|+||+|..-|... ..++++.++
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 57999998888888777776432 1 1333 45677776654422 2699999998665322 224555555
Q ss_pred h
Q 008761 102 R 102 (554)
Q Consensus 102 ~ 102 (554)
.
T Consensus 194 ~ 194 (308)
T PLN02366 194 R 194 (308)
T ss_pred H
Confidence 4
No 493
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=28.12 E-value=1.6e+02 Score=33.37 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=38.6
Q ss_pred CceEEEEecCCCC-CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 78 DIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 78 ~PDLILLDi~MP~-mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
..|+|.+|..-.. ..-++++++|++. ++.++|++ ..-.+.+.+..+.++||+.+.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~--~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSN--YPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhh--CCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 6999999984221 1237899999875 24566554 344566788899999999774
No 494
>PRK10481 hypothetical protein; Provisional
Probab=28.09 E-value=3.3e+02 Score=27.75 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=38.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEEC------CHHHHHHHHHhc-CCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVR------SPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~------dg~EALe~L~~~-~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
+|-||--.+.......+-+...|+++..+. +.....+..++. ....|+|++|+. ++.. ++...|.+.
T Consensus 131 riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~--G~~~-~~~~~le~~--- 204 (224)
T PRK10481 131 QVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCL--GYHQ-RHRDLLQKA--- 204 (224)
T ss_pred eEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCC--CcCH-HHHHHHHHH---
Confidence 555555555555555555555588765322 222333333311 126899999875 3333 445555543
Q ss_pred CCceEE
Q 008761 107 QRIPVI 112 (554)
Q Consensus 107 ~~iPII 112 (554)
-.+|||
T Consensus 205 lg~PVI 210 (224)
T PRK10481 205 LDVPVL 210 (224)
T ss_pred HCcCEE
Confidence 466776
No 495
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=27.96 E-value=3.6e+02 Score=29.49 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=39.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCC----------------CCCcHH-HHHHHHHhccCCCCceEEEEecCCCHHHH
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDL----------------PMTKGL-KMLKYITRDKELQRIPVIMMSAQDEVSVV 123 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~M----------------P~mDGl-ElLr~Ir~~~~~~~iPIIVLSs~~d~e~~ 123 (554)
.+.+..+.+...... ..+|+|++|=.= |-..|+ ++-+.|........+.+|+-........+
T Consensus 211 ~~~~~~~~~~~~~~~-ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv 289 (368)
T PF01645_consen 211 VAGRGVEDIAAGAAK-AGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDV 289 (368)
T ss_dssp E-STTHHHHHHHHHH-TT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHH
T ss_pred CCCCcHHHHHHhhhh-ccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHH
Confidence 445555555543222 279999999533 223333 33344444333345665555567888899
Q ss_pred HHHHHcCCCEEE
Q 008761 124 VKCLRLGAADYL 135 (554)
Q Consensus 124 ~eAL~aGA~DyL 135 (554)
++|+.+||+.+-
T Consensus 290 ~kalaLGAD~v~ 301 (368)
T PF01645_consen 290 AKALALGADAVY 301 (368)
T ss_dssp HHHHHCT-SEEE
T ss_pred HHHHhcCCCeeE
Confidence 999999998874
No 496
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.92 E-value=3e+02 Score=26.78 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=0.0
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 62 VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 62 A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
+.+..|+.+..... .|.|-+ .--..+-|++.++.++... +.+||+.+.+ -+.+.+.+.+++||+.+
T Consensus 112 ~~t~~e~~~A~~~G---adyv~~-Fpt~~~~G~~~l~~~~~~~--~~ipvvaiGG-I~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 112 ALTPTEIVTAWQAG---ASCVKV-FPVQAVGGADYIKSLQGPL--GHIPLIPTGG-VTLENAQAFIQAGAIAV 177 (187)
T ss_pred cCCHHHHHHHHHCC---CCEEEE-CcCCcccCHHHHHHHHhhC--CCCcEEEeCC-CCHHHHHHHHHCCCeEE
No 497
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=27.92 E-value=3e+02 Score=28.03 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC----EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSY----QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~----eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~ 107 (554)
-|++.|-++...+......|...|. +++.....++++..+. ..|++++|... -|-. ++++.++-. +
T Consensus 70 GR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~--~d~~~~vl~~~~~~---~ 140 (218)
T PF07279_consen 70 GRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKR--EDFAARVLRAAKLS---P 140 (218)
T ss_pred CeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCc--hhHHHHHHHHhccC---C
Confidence 3555555555556666777765553 4445455677776663 58999999984 3445 666666532 3
Q ss_pred CceEEEEe
Q 008761 108 RIPVIMMS 115 (554)
Q Consensus 108 ~iPIIVLS 115 (554)
.--|||..
T Consensus 141 ~GaVVV~~ 148 (218)
T PF07279_consen 141 RGAVVVCY 148 (218)
T ss_pred CceEEEEe
Confidence 33455443
No 498
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=27.88 E-value=3e+02 Score=23.84 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=41.7
Q ss_pred HHhhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC--CCHHHHHH
Q 008761 51 LLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ--DEVSVVVK 125 (554)
Q Consensus 51 lL~~~g~eV~---~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~--~d~e~~~e 125 (554)
++++....|. .|.-...|.++|... ..+.-+.|+.. ..++.++.+.+........+|.|++-+. ...+.+.+
T Consensus 4 ~i~~~~Vvvysk~~Cp~C~~ak~~L~~~--~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 4 MVSEKAVVIFSRSSCCMCHVVKRLLLTL--GVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred hhccCCEEEEECCCCHHHHHHHHHHHHc--CCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 3444444444 234466777777766 34444555543 3345666666654333467899988763 33334444
Q ss_pred HHHcC
Q 008761 126 CLRLG 130 (554)
Q Consensus 126 AL~aG 130 (554)
..+.|
T Consensus 81 l~~~G 85 (99)
T TIGR02189 81 LHISG 85 (99)
T ss_pred HHHcC
Confidence 44443
No 499
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=27.86 E-value=81 Score=32.21 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=50.4
Q ss_pred CcEEEEEe-CCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHH
Q 008761 32 KVRILLCD-NDSNSSDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLK 95 (554)
Q Consensus 32 kirVLIVD-Dd~~~r~~L~~lL~~~g~eV~---~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlE 95 (554)
..+|=.|- -.......|.+.|.+.||+|. ++.+...|...|++++.+|-+|+-|--|++.+|++
T Consensus 39 ~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gid 106 (262)
T KOG3040|consen 39 HVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGID 106 (262)
T ss_pred CceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCcc
Confidence 34554444 445566678888888899876 67788899999998878999999999999999964
No 500
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=27.83 E-value=5.1e+02 Score=26.43 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=35.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC-----CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCS-----YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP 89 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g-----~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP 89 (554)
.+|.+||-++.+.+..++.+...+ -.+. ...++.+.++.. ...+|+||+|..-|
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~ 156 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDP 156 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCCCC
Confidence 478999999988888888764321 1222 345666665543 23799999997644
Done!