Query 008761
Match_columns 554
No_of_seqs 450 out of 2364
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:06:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 9.3E-26 3.2E-30 205.5 16.5 122 31-154 11-133 (134)
2 3gl9_A Response regulator; bet 99.9 5.3E-22 1.8E-26 172.3 17.1 120 32-153 2-121 (122)
3 3t6k_A Response regulator rece 99.9 5.6E-22 1.9E-26 175.3 17.4 125 30-156 2-126 (136)
4 1a2o_A CHEB methylesterase; ba 99.9 3.6E-21 1.2E-25 200.5 20.2 171 30-246 1-184 (349)
5 3f6p_A Transcriptional regulat 99.9 4.5E-21 1.5E-25 165.6 16.3 117 32-153 2-118 (120)
6 3crn_A Response regulator rece 99.9 1.5E-20 5.1E-25 164.7 19.3 126 30-159 1-126 (132)
7 2lpm_A Two-component response 99.9 1.6E-23 5.5E-28 188.4 0.1 116 28-152 4-120 (123)
8 3h1g_A Chemotaxis protein CHEY 99.9 1.6E-20 5.4E-25 163.9 17.2 122 31-153 4-126 (129)
9 3rqi_A Response regulator prot 99.9 4.1E-21 1.4E-25 179.1 13.8 124 30-157 5-128 (184)
10 3jte_A Response regulator rece 99.8 4.3E-20 1.5E-24 162.9 19.0 128 30-159 1-128 (143)
11 1dbw_A Transcriptional regulat 99.8 3.7E-20 1.3E-24 160.2 17.6 120 30-153 1-120 (126)
12 2r25_B Osmosensing histidine p 99.8 3.3E-20 1.1E-24 163.3 17.3 118 32-152 2-125 (133)
13 3kht_A Response regulator; PSI 99.8 2.9E-20 1E-24 164.5 17.0 128 28-157 1-131 (144)
14 3m6m_D Sensory/regulatory prot 99.8 3.2E-20 1.1E-24 165.7 17.2 123 30-154 12-136 (143)
15 3gt7_A Sensor protein; structu 99.8 4.2E-20 1.4E-24 166.6 17.9 123 31-155 6-128 (154)
16 1srr_A SPO0F, sporulation resp 99.8 2.4E-20 8.3E-25 160.6 15.5 118 31-152 2-119 (124)
17 2pl1_A Transcriptional regulat 99.8 1.1E-19 3.8E-24 155.1 18.6 118 33-154 1-118 (121)
18 3i42_A Response regulator rece 99.8 2E-20 6.9E-25 161.8 13.7 122 30-154 1-122 (127)
19 1xhf_A DYE resistance, aerobic 99.8 1.2E-19 4.2E-24 155.6 18.4 120 30-154 1-120 (123)
20 3b2n_A Uncharacterized protein 99.8 6.1E-20 2.1E-24 161.0 16.3 122 31-156 2-125 (133)
21 3hv2_A Response regulator/HD d 99.8 1.4E-19 4.8E-24 162.3 19.1 124 31-158 13-137 (153)
22 1jbe_A Chemotaxis protein CHEY 99.8 8.8E-20 3E-24 157.6 17.0 122 31-154 3-125 (128)
23 3cfy_A Putative LUXO repressor 99.8 1.1E-19 3.8E-24 160.7 17.8 121 33-157 5-125 (137)
24 1i3c_A Response regulator RCP1 99.8 1.6E-19 5.6E-24 161.5 18.4 124 31-154 7-137 (149)
25 3grc_A Sensor protein, kinase; 99.8 4.2E-20 1.4E-24 162.4 14.3 125 31-157 5-130 (140)
26 1zgz_A Torcad operon transcrip 99.8 2.2E-19 7.7E-24 153.8 18.5 118 32-154 2-119 (122)
27 3heb_A Response regulator rece 99.8 1.6E-19 5.6E-24 161.4 18.3 125 31-155 3-136 (152)
28 1tmy_A CHEY protein, TMY; chem 99.8 1.1E-19 3.8E-24 155.3 16.4 117 32-152 2-119 (120)
29 2a9o_A Response regulator; ess 99.8 1.5E-19 5.2E-24 153.7 16.9 116 33-153 2-117 (120)
30 3kto_A Response regulator rece 99.8 3.8E-20 1.3E-24 162.9 13.5 122 31-156 5-128 (136)
31 3hdg_A Uncharacterized protein 99.8 1.2E-19 4.1E-24 158.9 16.3 124 31-158 6-129 (137)
32 3nhm_A Response regulator; pro 99.8 1.2E-19 4E-24 157.9 16.1 122 31-156 3-124 (133)
33 3h5i_A Response regulator/sens 99.8 4.3E-20 1.5E-24 163.3 13.5 127 28-158 1-128 (140)
34 3r0j_A Possible two component 99.8 1.5E-19 5.2E-24 176.3 18.7 122 30-155 21-142 (250)
35 3n53_A Response regulator rece 99.8 4.1E-20 1.4E-24 162.8 13.2 127 30-159 1-127 (140)
36 3lua_A Response regulator rece 99.8 3.1E-20 1.1E-24 163.6 12.4 124 31-156 3-129 (140)
37 1mb3_A Cell division response 99.8 1.4E-19 5E-24 155.1 16.0 118 33-152 2-119 (124)
38 3eod_A Protein HNR; response r 99.8 1.1E-19 3.7E-24 157.8 15.4 122 30-155 5-127 (130)
39 1k66_A Phytochrome response re 99.8 2.4E-19 8.2E-24 157.7 17.2 127 29-155 3-139 (149)
40 2qzj_A Two-component response 99.8 2.6E-19 8.8E-24 158.2 17.4 119 32-155 4-122 (136)
41 3c3m_A Response regulator rece 99.8 2.1E-19 7.2E-24 158.5 16.7 123 30-154 1-123 (138)
42 3luf_A Two-component system re 99.8 1.7E-19 5.8E-24 178.8 18.0 126 31-157 123-248 (259)
43 1p6q_A CHEY2; chemotaxis, sign 99.8 1.2E-19 4.1E-24 157.0 14.8 120 32-153 6-126 (129)
44 3cnb_A DNA-binding response re 99.8 4.4E-19 1.5E-23 155.4 17.9 123 31-155 7-131 (143)
45 3hdv_A Response regulator; PSI 99.8 3.9E-19 1.3E-23 155.4 17.3 124 31-156 6-129 (136)
46 1k68_A Phytochrome response re 99.8 4.7E-19 1.6E-23 153.9 17.8 125 32-156 2-133 (140)
47 1zh2_A KDP operon transcriptio 99.8 3.8E-19 1.3E-23 151.5 16.6 117 33-154 2-118 (121)
48 2zay_A Response regulator rece 99.8 2.8E-19 9.7E-24 158.3 16.3 124 30-155 6-129 (147)
49 4e7p_A Response regulator; DNA 99.8 3E-19 1E-23 159.7 16.5 121 31-155 19-141 (150)
50 1dz3_A Stage 0 sporulation pro 99.8 3.3E-19 1.1E-23 155.1 15.9 120 32-154 2-123 (130)
51 3ilh_A Two component response 99.8 6.3E-19 2.1E-23 154.9 17.8 122 31-154 8-139 (146)
52 3kcn_A Adenylate cyclase homol 99.8 7.1E-19 2.4E-23 157.4 18.3 124 31-159 3-128 (151)
53 3cg4_A Response regulator rece 99.8 1.3E-19 4.6E-24 159.2 13.2 126 30-157 5-130 (142)
54 2jba_A Phosphate regulon trans 99.8 5.6E-20 1.9E-24 158.3 10.1 120 32-153 2-121 (127)
55 1mvo_A PHOP response regulator 99.8 4.5E-19 1.5E-23 154.7 16.0 119 32-154 3-121 (136)
56 3snk_A Response regulator CHEY 99.8 3E-20 1E-24 163.0 8.5 120 31-154 13-133 (135)
57 3f6c_A Positive transcription 99.8 1.3E-19 4.4E-24 157.7 12.4 120 32-155 1-121 (134)
58 3hzh_A Chemotaxis response reg 99.8 2.7E-19 9.3E-24 161.8 14.9 121 30-152 34-155 (157)
59 2qr3_A Two-component system re 99.8 5.7E-19 2E-23 154.4 16.4 122 30-155 1-127 (140)
60 3dzd_A Transcriptional regulat 99.8 1.1E-19 3.8E-24 190.3 13.9 118 34-155 2-119 (368)
61 2rjn_A Response regulator rece 99.8 1.1E-18 3.8E-23 156.3 18.5 125 30-158 5-130 (154)
62 3lte_A Response regulator; str 99.8 1E-18 3.5E-23 151.7 17.2 121 31-154 5-125 (132)
63 3mm4_A Histidine kinase homolo 99.8 5.7E-19 2E-23 168.4 16.1 126 30-157 59-199 (206)
64 1yio_A Response regulatory pro 99.8 3.4E-19 1.2E-23 167.7 14.4 122 31-156 3-124 (208)
65 3q9s_A DNA-binding response re 99.8 4.4E-19 1.5E-23 174.2 15.5 121 29-154 34-154 (249)
66 3cg0_A Response regulator rece 99.8 1.4E-18 4.8E-23 151.9 17.1 123 31-158 8-132 (140)
67 2qxy_A Response regulator; reg 99.8 7.6E-19 2.6E-23 154.7 15.4 121 31-156 3-123 (142)
68 3cz5_A Two-component response 99.8 7.8E-19 2.7E-23 157.1 15.6 124 28-155 1-126 (153)
69 4dad_A Putative pilus assembly 99.8 2.8E-19 9.7E-24 158.5 12.5 120 31-154 19-141 (146)
70 3n0r_A Response regulator; sig 99.8 8.8E-20 3E-24 184.5 10.4 117 32-155 160-278 (286)
71 2gkg_A Response regulator homo 99.8 8.9E-19 3E-23 149.7 14.7 121 30-153 3-124 (127)
72 3eq2_A Probable two-component 99.8 4.2E-19 1.5E-23 185.0 15.2 123 29-155 2-125 (394)
73 1kgs_A DRRD, DNA binding respo 99.8 9.8E-19 3.4E-23 166.2 16.3 120 32-155 2-121 (225)
74 1a04_A Nitrate/nitrite respons 99.8 1.8E-18 6.2E-23 163.8 18.0 120 31-154 4-125 (215)
75 3eul_A Possible nitrate/nitrit 99.8 1.5E-18 5.1E-23 155.1 16.4 123 31-157 14-138 (152)
76 3cu5_A Two component transcrip 99.8 5E-19 1.7E-23 157.2 12.7 121 32-156 2-125 (141)
77 2ayx_A Sensor kinase protein R 99.8 1.2E-18 4.1E-23 171.9 16.8 123 30-156 127-249 (254)
78 3a10_A Response regulator; pho 99.8 5.7E-19 1.9E-23 150.0 12.5 114 33-152 2-115 (116)
79 1s8n_A Putative antiterminator 99.8 1.2E-18 4.1E-23 164.2 15.8 121 32-157 13-134 (205)
80 1dcf_A ETR1 protein; beta-alph 99.8 1.9E-18 6.6E-23 151.3 15.8 120 31-153 6-128 (136)
81 2jk1_A HUPR, hydrogenase trans 99.8 4.4E-18 1.5E-22 149.9 17.9 120 33-157 2-122 (139)
82 1ny5_A Transcriptional regulat 99.8 1.5E-18 5.3E-23 182.6 17.7 121 33-157 1-121 (387)
83 1qkk_A DCTD, C4-dicarboxylate 99.8 2.7E-18 9.3E-23 153.9 16.5 122 32-157 3-124 (155)
84 2qvg_A Two component response 99.8 2.5E-18 8.6E-23 151.2 15.4 120 31-150 6-131 (143)
85 1w25_A Stalked-cell differenti 99.8 3E-18 1E-22 181.4 18.7 123 33-157 2-124 (459)
86 1ys7_A Transcriptional regulat 99.8 1.2E-18 4.2E-23 166.4 14.0 122 31-156 6-127 (233)
87 2qsj_A DNA-binding response re 99.8 1.6E-18 5.4E-23 155.0 12.2 122 30-155 1-125 (154)
88 3t8y_A CHEB, chemotaxis respon 99.8 5.9E-18 2E-22 154.6 16.1 112 28-144 21-136 (164)
89 2qv0_A Protein MRKE; structura 99.8 1.1E-17 3.8E-22 147.3 17.1 121 31-157 8-130 (143)
90 2gwr_A DNA-binding response re 99.8 2.3E-18 7.9E-23 166.5 13.8 119 30-153 3-121 (238)
91 3eqz_A Response regulator; str 99.8 1.8E-18 6.2E-23 150.0 11.1 119 30-153 1-124 (135)
92 2rdm_A Response regulator rece 99.8 1.2E-17 4E-22 144.7 16.0 122 28-154 1-123 (132)
93 2oqr_A Sensory transduction pr 99.8 4E-18 1.4E-22 162.8 14.0 118 32-154 4-121 (230)
94 3bre_A Probable two-component 99.8 7.8E-18 2.7E-22 171.7 15.8 120 32-153 18-138 (358)
95 1p2f_A Response regulator; DRR 99.8 1.2E-17 4E-22 158.8 15.6 116 32-154 2-117 (220)
96 3c3w_A Two component transcrip 99.7 3.5E-18 1.2E-22 164.4 9.5 121 32-156 1-123 (225)
97 2pln_A HP1043, response regula 99.7 5.6E-17 1.9E-21 142.1 16.4 117 29-154 15-133 (137)
98 3c97_A Signal transduction his 99.7 1.3E-17 4.6E-22 146.9 12.3 120 32-156 10-132 (140)
99 3sy8_A ROCR; TIM barrel phosph 99.7 8.9E-18 3E-22 176.4 12.9 122 30-154 1-128 (400)
100 2j48_A Two-component sensor ki 99.7 2E-17 6.7E-22 138.7 12.4 114 33-151 2-115 (119)
101 3kyj_B CHEY6 protein, putative 99.7 1.8E-17 6.2E-22 146.9 12.6 116 31-150 12-131 (145)
102 1dc7_A NTRC, nitrogen regulati 99.7 2.2E-19 7.7E-24 153.2 -0.5 121 30-154 1-121 (124)
103 3klo_A Transcriptional regulat 99.7 4.3E-18 1.5E-22 163.2 8.2 120 31-154 6-129 (225)
104 1qo0_D AMIR; binding protein, 99.7 3.8E-17 1.3E-21 152.8 11.5 116 31-155 11-126 (196)
105 2b4a_A BH3024; flavodoxin-like 99.7 4.3E-17 1.5E-21 143.0 9.6 116 30-153 13-130 (138)
106 2hqr_A Putative transcriptiona 99.7 3.5E-16 1.2E-20 148.9 13.9 114 33-154 1-115 (223)
107 3luf_A Two-component system re 99.6 4.3E-16 1.5E-20 154.4 9.4 103 32-141 4-107 (259)
108 2vyc_A Biodegradative arginine 99.6 1.4E-15 4.7E-20 173.1 10.4 119 34-155 2-134 (755)
109 1w25_A Stalked-cell differenti 99.1 2.8E-09 9.5E-14 112.6 19.5 123 31-157 151-273 (459)
110 3cwo_X Beta/alpha-barrel prote 99.0 1.7E-10 5.8E-15 109.6 6.0 92 57-152 6-99 (237)
111 3sft_A CHEB, chemotaxis respon 97.6 1.9E-05 6.4E-10 76.2 2.5 33 217-250 7-40 (193)
112 1chd_A CHEB methylesterase; ch 97.4 3.5E-05 1.2E-09 74.9 1.6 32 217-249 10-41 (203)
113 3n75_A LDC, lysine decarboxyla 97.0 0.00078 2.7E-08 76.4 7.6 104 45-155 19-124 (715)
114 2ayx_A Sensor kinase protein R 97.0 0.0014 4.6E-08 64.0 7.7 95 31-152 10-104 (254)
115 3q7r_A Transcriptional regulat 96.5 0.022 7.4E-07 49.6 10.4 107 32-154 12-118 (121)
116 2yxb_A Coenzyme B12-dependent 96.4 0.094 3.2E-06 48.4 15.6 122 31-156 17-147 (161)
117 3cwo_X Beta/alpha-barrel prote 96.0 0.019 6.4E-07 53.8 8.2 81 64-148 131-220 (237)
118 1ccw_A Protein (glutamate muta 94.8 0.99 3.4E-05 40.3 15.2 116 32-150 3-132 (137)
119 1wv2_A Thiazole moeity, thiazo 93.2 1.3 4.5E-05 44.4 13.8 119 32-157 105-241 (265)
120 3q58_A N-acetylmannosamine-6-p 92.2 1 3.6E-05 43.8 11.4 89 42-137 115-210 (229)
121 3fkq_A NTRC-like two-domain pr 92.2 1.9 6.5E-05 44.3 14.1 104 31-152 20-126 (373)
122 3ogl_Q JAZ1 incomplete degron 91.4 0.094 3.2E-06 32.9 1.9 19 468-486 3-21 (21)
123 1y80_A Predicted cobalamin bin 91.2 1.5 5.1E-05 41.5 11.1 100 32-136 88-196 (210)
124 1xrs_B D-lysine 5,6-aminomutas 90.9 2.3 7.9E-05 42.5 12.6 116 32-152 120-256 (262)
125 3igs_A N-acetylmannosamine-6-p 90.9 1.7 5.9E-05 42.3 11.5 88 42-136 115-209 (232)
126 2i2x_B MTAC, methyltransferase 90.5 3.4 0.00012 40.6 13.3 112 31-152 122-242 (258)
127 3kp1_A D-ornithine aminomutase 89.3 2.5 8.5E-05 47.4 12.1 118 31-153 601-734 (763)
128 1req_A Methylmalonyl-COA mutas 88.9 3.2 0.00011 47.1 13.1 119 31-153 595-722 (727)
129 2htm_A Thiazole biosynthesis p 87.7 3.2 0.00011 41.6 10.8 103 49-157 117-232 (268)
130 3qja_A IGPS, indole-3-glycerol 87.2 7.7 0.00026 38.7 13.4 99 34-137 138-242 (272)
131 3ogk_Q JAZ1 incomplete degron 87.1 0.17 6E-06 32.1 0.8 19 471-489 1-19 (22)
132 3ezx_A MMCP 1, monomethylamine 86.9 2 6.8E-05 41.3 8.6 100 32-136 92-202 (215)
133 3o63_A Probable thiamine-phosp 86.3 8.4 0.00029 37.8 12.9 75 57-136 136-218 (243)
134 2xij_A Methylmalonyl-COA mutas 86.0 5.7 0.00019 45.4 12.8 121 31-155 603-732 (762)
135 3ffs_A Inosine-5-monophosphate 85.1 9.7 0.00033 40.2 13.4 102 32-136 156-274 (400)
136 1yad_A Regulatory protein TENI 84.1 9.8 0.00034 35.8 11.9 74 56-136 110-191 (221)
137 3f4w_A Putative hexulose 6 pho 81.6 16 0.00054 33.9 12.1 97 35-136 80-186 (211)
138 1xi3_A Thiamine phosphate pyro 81.1 17 0.00057 33.6 12.1 74 56-136 108-189 (215)
139 4fo4_A Inosine 5'-monophosphat 80.4 17 0.00057 37.9 12.9 102 32-136 120-239 (366)
140 1xm3_A Thiazole biosynthesis p 79.5 7.7 0.00026 38.3 9.6 76 56-137 126-207 (264)
141 1r8j_A KAIA; circadian clock p 78.9 15 0.00051 37.0 11.2 84 30-117 7-90 (289)
142 3rc1_A Sugar 3-ketoreductase; 77.9 34 0.0012 34.5 14.1 108 25-149 20-134 (350)
143 3usb_A Inosine-5'-monophosphat 77.4 28 0.00097 37.6 14.0 103 32-137 268-388 (511)
144 2gjl_A Hypothetical protein PA 76.7 22 0.00075 35.7 12.2 82 49-136 111-200 (328)
145 3e18_A Oxidoreductase; dehydro 76.3 18 0.00062 36.6 11.6 105 28-150 1-111 (359)
146 3bo9_A Putative nitroalkan dio 74.9 21 0.00071 36.2 11.5 81 50-136 118-204 (326)
147 3khj_A Inosine-5-monophosphate 74.5 21 0.00072 36.9 11.6 101 33-136 118-235 (361)
148 3bw2_A 2-nitropropane dioxygen 74.5 28 0.00095 35.6 12.5 78 53-136 142-236 (369)
149 2bfw_A GLGA glycogen synthase; 74.4 46 0.0016 29.4 12.7 106 32-153 70-179 (200)
150 4had_A Probable oxidoreductase 73.5 25 0.00085 35.1 11.6 109 25-149 16-131 (350)
151 3m2t_A Probable dehydrogenase; 73.4 20 0.00068 36.3 11.0 108 28-150 1-114 (359)
152 2c6q_A GMP reductase 2; TIM ba 73.3 40 0.0014 34.6 13.3 103 33-139 133-255 (351)
153 3tsm_A IGPS, indole-3-glycerol 73.2 31 0.001 34.5 12.0 87 45-136 158-248 (272)
154 3u3x_A Oxidoreductase; structu 72.5 22 0.00074 36.2 11.0 104 30-149 24-133 (361)
155 2gek_A Phosphatidylinositol ma 72.1 24 0.00082 34.8 11.0 109 32-155 240-350 (406)
156 2z6i_A Trans-2-enoyl-ACP reduc 71.9 26 0.0009 35.3 11.4 80 51-136 105-190 (332)
157 1y0e_A Putative N-acetylmannos 71.6 21 0.00073 33.3 10.0 87 45-137 107-204 (223)
158 2v82_A 2-dehydro-3-deoxy-6-pho 70.9 11 0.00037 35.2 7.8 79 50-137 95-176 (212)
159 2tps_A Protein (thiamin phosph 70.7 35 0.0012 31.8 11.3 70 61-136 122-199 (227)
160 4avf_A Inosine-5'-monophosphat 69.5 61 0.0021 34.7 14.2 101 33-136 242-360 (490)
161 2q5c_A NTRC family transcripti 69.3 58 0.002 30.5 12.4 117 32-151 4-138 (196)
162 3rht_A (gatase1)-like protein; 69.2 1.7 5.8E-05 43.3 1.7 78 32-117 4-88 (259)
163 3bul_A Methionine synthase; tr 68.8 23 0.00078 39.2 10.8 101 32-138 98-212 (579)
164 1geq_A Tryptophan synthase alp 68.1 27 0.00092 33.2 10.0 83 48-137 125-220 (248)
165 2v5j_A 2,4-dihydroxyhept-2-ENE 66.9 70 0.0024 31.9 13.1 99 48-149 30-131 (287)
166 3vnd_A TSA, tryptophan synthas 66.7 14 0.00047 36.8 7.8 52 94-147 83-140 (267)
167 2ekc_A AQ_1548, tryptophan syn 66.5 23 0.00079 34.7 9.3 54 93-148 81-140 (262)
168 1eep_A Inosine 5'-monophosphat 66.3 48 0.0016 34.4 12.2 91 43-136 180-284 (404)
169 2vws_A YFAU, 2-keto-3-deoxy su 66.2 80 0.0027 30.9 13.3 99 48-149 9-110 (267)
170 3r2g_A Inosine 5'-monophosphat 65.9 80 0.0028 32.7 13.7 96 33-136 113-227 (361)
171 3qz6_A HPCH/HPAI aldolase; str 65.4 41 0.0014 33.0 10.9 100 48-150 6-109 (261)
172 3q2i_A Dehydrogenase; rossmann 65.1 85 0.0029 31.3 13.5 105 28-149 9-120 (354)
173 3ec7_A Putative dehydrogenase; 64.9 46 0.0016 33.6 11.5 108 28-150 19-133 (357)
174 2f9f_A First mannosyl transfer 64.0 65 0.0022 28.4 11.2 107 32-154 50-162 (177)
175 2ixa_A Alpha-N-acetylgalactosa 63.9 24 0.00081 36.9 9.4 111 29-149 17-136 (444)
176 4fb5_A Probable oxidoreductase 63.2 55 0.0019 32.6 11.7 105 29-149 22-139 (393)
177 1geq_A Tryptophan synthase alp 63.0 23 0.0008 33.7 8.5 49 93-144 68-122 (248)
178 3e9m_A Oxidoreductase, GFO/IDH 62.8 35 0.0012 34.0 10.1 106 28-149 1-112 (330)
179 4h08_A Putative hydrolase; GDS 62.6 43 0.0015 30.0 9.9 81 32-117 20-120 (200)
180 1ka9_F Imidazole glycerol phos 61.9 36 0.0012 32.3 9.6 69 63-136 31-103 (252)
181 1qop_A Tryptophan synthase alp 61.3 20 0.0007 35.1 7.9 54 93-148 81-140 (268)
182 1ka9_F Imidazole glycerol phos 60.7 71 0.0024 30.2 11.5 77 66-147 155-241 (252)
183 2w6r_A Imidazole glycerol phos 60.7 31 0.0011 33.1 8.9 68 65-137 158-229 (266)
184 4e38_A Keto-hydroxyglutarate-a 60.3 21 0.00071 34.9 7.5 93 48-146 27-121 (232)
185 4e5v_A Putative THUA-like prot 59.9 8.1 0.00028 38.7 4.7 78 31-115 3-93 (281)
186 3gdo_A Uncharacterized oxidore 59.8 74 0.0025 32.0 12.0 104 28-150 1-111 (358)
187 1dxe_A 2-dehydro-3-deoxy-galac 59.5 96 0.0033 30.1 12.3 98 48-148 10-110 (256)
188 3fro_A GLGA glycogen synthase; 59.4 83 0.0028 31.1 12.1 107 31-153 284-394 (439)
189 1qv9_A F420-dependent methylen 59.1 32 0.0011 34.2 8.4 77 56-138 32-120 (283)
190 3evn_A Oxidoreductase, GFO/IDH 58.8 22 0.00077 35.3 7.8 106 28-149 1-112 (329)
191 3sc6_A DTDP-4-dehydrorhamnose 58.4 31 0.0011 32.7 8.5 79 32-116 5-106 (287)
192 1rzu_A Glycogen synthase 1; gl 58.2 68 0.0023 32.8 11.5 107 32-152 320-438 (485)
193 4fxs_A Inosine-5'-monophosphat 58.1 88 0.003 33.6 12.8 102 32-136 243-362 (496)
194 2d00_A V-type ATP synthase sub 57.6 66 0.0023 27.6 9.5 77 30-115 1-79 (109)
195 3btv_A Galactose/lactose metab 57.4 39 0.0013 35.3 9.7 110 26-149 14-140 (438)
196 1h5y_A HISF; histidine biosynt 57.2 73 0.0025 29.6 10.8 68 64-136 155-226 (253)
197 1h1y_A D-ribulose-5-phosphate 57.0 49 0.0017 31.3 9.5 85 50-137 107-201 (228)
198 2iw1_A Lipopolysaccharide core 57.0 40 0.0014 32.8 9.1 107 32-154 228-337 (374)
199 1zh8_A Oxidoreductase; TM0312, 56.6 1.3E+02 0.0045 29.9 13.1 105 29-149 15-127 (340)
200 2iuy_A Avigt4, glycosyltransfe 56.5 23 0.00079 34.4 7.3 58 30-89 1-95 (342)
201 1rd5_A Tryptophan synthase alp 56.5 22 0.00077 34.4 7.2 85 47-137 134-230 (262)
202 1jcn_A Inosine monophosphate d 56.1 77 0.0026 33.9 11.9 90 44-139 283-390 (514)
203 2xci_A KDO-transferase, 3-deox 56.0 28 0.00094 35.3 8.0 111 32-154 225-346 (374)
204 3mz0_A Inositol 2-dehydrogenas 55.9 1.4E+02 0.0047 29.6 13.1 102 32-149 2-111 (344)
205 2p2s_A Putative oxidoreductase 55.9 35 0.0012 33.9 8.6 103 30-148 2-110 (336)
206 1ypf_A GMP reductase; GUAC, pu 55.7 1.7E+02 0.0059 29.4 14.2 97 33-136 121-238 (336)
207 3ezy_A Dehydrogenase; structur 55.6 1.3E+02 0.0044 29.8 12.9 102 32-149 2-109 (344)
208 3c48_A Predicted glycosyltrans 55.6 72 0.0025 31.9 11.0 109 32-154 276-391 (438)
209 3dty_A Oxidoreductase, GFO/IDH 55.5 81 0.0028 32.2 11.6 111 30-150 10-131 (398)
210 3beo_A UDP-N-acetylglucosamine 55.5 1.2E+02 0.0041 29.5 12.4 70 66-155 274-343 (375)
211 3fwz_A Inner membrane protein 55.5 71 0.0024 27.4 9.6 94 32-136 30-124 (140)
212 4adt_A Pyridoxine biosynthetic 55.2 63 0.0021 32.6 10.4 71 60-136 130-237 (297)
213 1ep3_A Dihydroorotate dehydrog 55.2 55 0.0019 32.0 9.9 39 94-135 230-268 (311)
214 3db2_A Putative NADPH-dependen 55.2 95 0.0033 30.9 11.8 101 31-149 4-111 (354)
215 4h3v_A Oxidoreductase domain p 54.9 62 0.0021 32.2 10.4 97 29-141 3-110 (390)
216 3v5n_A Oxidoreductase; structu 54.8 1.1E+02 0.0036 31.7 12.4 111 30-149 35-155 (417)
217 4dzz_A Plasmid partitioning pr 54.7 48 0.0016 29.7 8.7 66 32-102 30-97 (206)
218 1v4v_A UDP-N-acetylglucosamine 54.2 1.2E+02 0.0041 29.7 12.2 101 33-154 231-334 (376)
219 1tlt_A Putative oxidoreductase 53.9 81 0.0028 30.9 10.9 100 28-146 1-107 (319)
220 2qzs_A Glycogen synthase; glyc 53.3 65 0.0022 33.0 10.4 107 32-152 321-439 (485)
221 3ajx_A 3-hexulose-6-phosphate 53.1 19 0.00066 33.2 5.8 75 63-141 10-88 (207)
222 2nvw_A Galactose/lactose metab 52.7 87 0.003 33.2 11.6 104 30-148 37-158 (479)
223 1p0k_A Isopentenyl-diphosphate 52.5 1.5E+02 0.0052 29.8 12.9 88 45-137 167-280 (349)
224 1qop_A Tryptophan synthase alp 52.4 65 0.0022 31.4 9.8 41 94-137 194-234 (268)
225 2oo3_A Protein involved in cat 52.1 22 0.00074 35.9 6.3 70 33-102 114-184 (283)
226 3euw_A MYO-inositol dehydrogen 51.6 1.7E+02 0.006 28.8 13.1 101 31-148 3-109 (344)
227 3oqb_A Oxidoreductase; structu 51.2 64 0.0022 32.6 9.9 43 107-149 82-128 (383)
228 3nav_A Tryptophan synthase alp 50.6 22 0.00076 35.4 6.1 53 92-146 83-141 (271)
229 2w6r_A Imidazole glycerol phos 50.6 51 0.0017 31.5 8.6 69 64-137 31-103 (266)
230 3qhp_A Type 1 capsular polysac 49.7 67 0.0023 27.4 8.5 109 31-155 31-141 (166)
231 2p10_A MLL9387 protein; putati 49.3 92 0.0032 31.4 10.3 80 54-138 161-260 (286)
232 3rot_A ABC sugar transporter, 49.3 54 0.0018 31.2 8.5 78 32-116 3-94 (297)
233 1ujp_A Tryptophan synthase alp 49.3 38 0.0013 33.6 7.5 82 64-149 28-138 (271)
234 3ic5_A Putative saccharopine d 49.2 69 0.0024 25.7 8.1 90 32-134 5-97 (118)
235 3moi_A Probable dehydrogenase; 49.2 1.2E+02 0.0043 30.7 11.7 101 32-149 2-109 (387)
236 3snr_A Extracellular ligand-bi 48.6 65 0.0022 31.1 9.1 85 33-123 136-231 (362)
237 1vrd_A Inosine-5'-monophosphat 48.4 1.4E+02 0.0048 31.5 12.3 90 44-136 265-368 (494)
238 3s83_A Ggdef family protein; s 48.4 46 0.0016 31.7 7.8 99 48-149 144-253 (259)
239 4fxs_A Inosine-5'-monophosphat 47.9 53 0.0018 35.3 9.0 66 65-136 233-299 (496)
240 1yxy_A Putative N-acetylmannos 47.8 88 0.003 29.3 9.7 84 45-136 121-214 (234)
241 4eyg_A Twin-arginine transloca 47.4 1.1E+02 0.0037 29.7 10.6 78 34-115 141-230 (368)
242 4a29_A Engineered retro-aldol 47.4 2.2E+02 0.0076 28.2 12.7 88 45-137 142-233 (258)
243 2lci_A Protein OR36; structura 47.4 52 0.0018 28.1 6.9 27 34-60 53-79 (134)
244 1vgv_A UDP-N-acetylglucosamine 47.4 92 0.0031 30.5 10.1 103 32-155 238-343 (384)
245 1thf_D HISF protein; thermophI 47.4 72 0.0025 30.1 9.0 67 65-136 153-223 (253)
246 3ohs_X Trans-1,2-dihydrobenzen 47.0 1.4E+02 0.0048 29.4 11.4 102 32-150 2-112 (334)
247 3okp_A GDP-mannose-dependent a 46.9 51 0.0017 32.2 8.1 108 32-154 229-344 (394)
248 3jy6_A Transcriptional regulat 46.3 78 0.0027 29.6 9.0 62 46-117 27-94 (276)
249 3l9w_A Glutathione-regulated p 46.0 52 0.0018 34.4 8.4 96 32-138 27-123 (413)
250 3ovp_A Ribulose-phosphate 3-ep 45.9 51 0.0018 31.7 7.7 56 78-136 134-196 (228)
251 3cea_A MYO-inositol 2-dehydrog 45.9 2.2E+02 0.0075 27.9 12.7 102 30-146 6-113 (346)
252 3sr7_A Isopentenyl-diphosphate 45.8 1.6E+02 0.0054 30.5 11.9 86 45-136 195-306 (365)
253 3kts_A Glycerol uptake operon 45.8 30 0.001 32.9 5.9 62 66-136 117-178 (192)
254 2yw3_A 4-hydroxy-2-oxoglutarat 45.6 1.1E+02 0.0038 28.7 9.9 81 61-151 110-197 (207)
255 3fhl_A Putative oxidoreductase 45.2 53 0.0018 33.1 8.1 106 28-150 1-111 (362)
256 3f4w_A Putative hexulose 6 pho 45.2 42 0.0015 30.9 6.8 74 64-141 11-88 (211)
257 3n74_A 3-ketoacyl-(acyl-carrie 45.0 1.3E+02 0.0045 28.1 10.5 84 29-116 6-91 (261)
258 2qjg_A Putative aldolase MJ040 44.9 1.7E+02 0.0057 28.0 11.4 61 67-136 170-236 (273)
259 1wa3_A 2-keto-3-deoxy-6-phosph 44.7 34 0.0012 31.5 6.1 65 64-136 113-177 (205)
260 1ydw_A AX110P-like protein; st 44.5 2.3E+02 0.0078 28.2 12.7 104 30-146 4-113 (362)
261 3r2g_A Inosine 5'-monophosphat 44.5 69 0.0024 33.2 8.9 66 66-136 102-168 (361)
262 3o9z_A Lipopolysaccaride biosy 44.3 61 0.0021 32.2 8.2 108 32-150 3-118 (312)
263 4gqa_A NAD binding oxidoreduct 44.1 2.2E+02 0.0075 28.9 12.7 103 32-150 26-142 (412)
264 4avf_A Inosine-5'-monophosphat 44.0 77 0.0026 33.9 9.5 68 64-136 229-297 (490)
265 2vpt_A Lipolytic enzyme; ester 44.0 40 0.0014 30.7 6.4 83 31-117 4-129 (215)
266 1gox_A (S)-2-hydroxy-acid oxid 43.8 1E+02 0.0035 31.6 10.1 87 46-136 215-308 (370)
267 3sgz_A Hydroxyacid oxidase 2; 43.7 1.1E+02 0.0038 31.6 10.2 87 46-136 207-300 (352)
268 3tdn_A FLR symmetric alpha-bet 43.4 76 0.0026 30.1 8.5 68 64-136 36-107 (247)
269 1tqj_A Ribulose-phosphate 3-ep 43.4 45 0.0015 31.9 6.8 81 64-150 18-107 (230)
270 4gmf_A Yersiniabactin biosynth 43.3 93 0.0032 32.0 9.7 99 31-150 6-114 (372)
271 1h5y_A HISF; histidine biosynt 43.1 77 0.0026 29.4 8.4 69 63-136 33-105 (253)
272 1izc_A Macrophomate synthase i 43.1 2.4E+02 0.0084 28.7 12.7 91 58-150 45-138 (339)
273 3o07_A Pyridoxine biosynthesis 43.0 46 0.0016 33.7 6.9 57 93-152 186-249 (291)
274 3oa2_A WBPB; oxidoreductase, s 42.8 68 0.0023 31.9 8.4 108 32-149 3-118 (318)
275 2jjm_A Glycosyl transferase, g 42.8 53 0.0018 32.5 7.6 107 33-154 242-350 (394)
276 1thf_D HISF protein; thermophI 42.7 1.2E+02 0.0042 28.5 9.8 70 63-137 30-103 (253)
277 2fli_A Ribulose-phosphate 3-ep 42.4 36 0.0012 31.5 5.9 58 78-136 131-197 (220)
278 1vzw_A Phosphoribosyl isomeras 42.4 1.2E+02 0.0041 28.5 9.7 79 64-147 147-238 (244)
279 3kux_A Putative oxidoreductase 42.1 1.4E+02 0.0048 29.7 10.6 100 31-149 6-112 (352)
280 3e82_A Putative oxidoreductase 41.9 1.7E+02 0.0057 29.4 11.2 101 30-149 5-112 (364)
281 3ffs_A Inosine-5-monophosphate 41.7 71 0.0024 33.6 8.5 65 66-136 146-211 (400)
282 1e6u_A GDP-fucose synthetase; 41.6 1.3E+02 0.0043 28.8 9.9 57 31-89 2-66 (321)
283 3sz8_A 2-dehydro-3-deoxyphosph 41.5 1.4E+02 0.0049 29.9 10.4 82 65-152 150-270 (285)
284 3r6d_A NAD-dependent epimerase 41.5 1.7E+02 0.0058 26.4 10.3 33 34-66 7-41 (221)
285 3td9_A Branched chain amino ac 41.4 1.8E+02 0.0061 28.2 11.1 84 32-121 149-243 (366)
286 1x1o_A Nicotinate-nucleotide p 41.4 1.7E+02 0.0057 29.3 10.9 93 34-136 168-267 (286)
287 3l4e_A Uncharacterized peptida 41.0 1.1E+02 0.0038 28.7 9.2 63 32-102 27-99 (206)
288 3inp_A D-ribulose-phosphate 3- 40.9 66 0.0023 31.5 7.7 83 64-150 41-129 (246)
289 2y88_A Phosphoribosyl isomeras 40.8 73 0.0025 29.9 7.9 78 64-146 150-240 (244)
290 3tsa_A SPNG, NDP-rhamnosyltran 40.7 1.1E+02 0.0038 30.2 9.5 73 32-115 1-142 (391)
291 3ceu_A Thiamine phosphate pyro 40.3 42 0.0014 31.4 6.0 68 61-134 94-169 (210)
292 3l49_A ABC sugar (ribose) tran 40.1 2E+02 0.0069 26.7 10.9 65 45-116 24-94 (291)
293 1wa3_A 2-keto-3-deoxy-6-phosph 40.0 1.6E+02 0.0054 26.8 9.9 91 51-146 6-98 (205)
294 3l6e_A Oxidoreductase, short-c 39.3 1.6E+02 0.0056 27.3 10.1 82 31-116 2-85 (235)
295 4fo4_A Inosine 5'-monophosphat 39.2 1.7E+02 0.0058 30.2 10.8 66 66-136 110-176 (366)
296 2nzl_A Hydroxyacid oxidase 1; 39.1 1E+02 0.0036 32.0 9.3 77 59-139 257-339 (392)
297 1me8_A Inosine-5'-monophosphat 39.0 1.9E+02 0.0066 30.8 11.7 75 59-136 289-380 (503)
298 2l69_A Rossmann 2X3 fold prote 38.9 1.8E+02 0.0063 24.8 14.3 119 33-155 3-124 (134)
299 1rd5_A Tryptophan synthase alp 38.9 47 0.0016 32.0 6.3 50 93-146 82-134 (262)
300 3usb_A Inosine-5'-monophosphat 38.9 96 0.0033 33.4 9.3 68 64-136 256-324 (511)
301 3ot5_A UDP-N-acetylglucosamine 38.8 2.4E+02 0.008 28.8 11.9 101 33-154 258-361 (403)
302 3uuw_A Putative oxidoreductase 38.8 1.4E+02 0.0047 29.0 9.8 102 30-150 4-112 (308)
303 2fhp_A Methylase, putative; al 38.5 1.8E+02 0.0063 25.1 9.7 70 32-101 67-139 (187)
304 1qdl_B Protein (anthranilate s 38.3 20 0.00068 33.1 3.3 48 35-84 4-51 (195)
305 4ew6_A D-galactose-1-dehydroge 38.3 82 0.0028 31.4 8.1 102 28-150 21-127 (330)
306 2hq1_A Glucose/ribitol dehydro 38.2 1.4E+02 0.005 27.3 9.4 83 30-116 3-91 (247)
307 2gjl_A Hypothetical protein PA 38.2 2.7E+02 0.0094 27.5 12.0 63 64-138 84-146 (328)
308 3vkj_A Isopentenyl-diphosphate 38.1 2.3E+02 0.0078 29.2 11.6 87 44-136 175-295 (368)
309 4hkt_A Inositol 2-dehydrogenas 38.0 3E+02 0.01 26.9 13.5 100 32-149 3-108 (331)
310 2r60_A Glycosyl transferase, g 37.9 91 0.0031 32.1 8.7 95 45-153 321-423 (499)
311 1vc4_A Indole-3-glycerol phosp 37.9 54 0.0018 32.1 6.5 87 46-136 141-235 (254)
312 3jr2_A Hexulose-6-phosphate sy 37.5 37 0.0012 32.0 5.1 74 64-141 17-94 (218)
313 3tjr_A Short chain dehydrogena 37.5 1.4E+02 0.0046 29.1 9.5 81 32-116 31-116 (301)
314 3lyl_A 3-oxoacyl-(acyl-carrier 37.4 1.5E+02 0.0053 27.3 9.5 83 30-116 3-90 (247)
315 3grp_A 3-oxoacyl-(acyl carrier 37.0 1.8E+02 0.0061 27.7 10.1 85 28-116 23-109 (266)
316 3k4h_A Putative transcriptiona 37.0 89 0.0031 29.3 7.8 63 45-116 32-100 (292)
317 3kjx_A Transcriptional regulat 36.9 2.9E+02 0.0099 26.7 11.8 62 44-114 86-153 (344)
318 2nli_A Lactate oxidase; flavoe 36.8 1.4E+02 0.0047 30.7 9.7 91 45-139 218-316 (368)
319 1p9l_A Dihydrodipicolinate red 36.7 3E+02 0.01 26.6 11.8 76 33-116 1-77 (245)
320 3gx8_A Monothiol glutaredoxin- 36.5 1.5E+02 0.0052 25.2 8.5 82 42-129 3-97 (121)
321 1req_B Methylmalonyl-COA mutas 36.2 52 0.0018 36.8 6.7 94 47-148 529-629 (637)
322 3qk7_A Transcriptional regulat 35.9 1.1E+02 0.0037 29.1 8.3 68 40-116 21-96 (294)
323 1kbi_A Cytochrome B2, L-LCR; f 35.8 1.8E+02 0.006 31.4 10.7 91 46-139 333-435 (511)
324 1tqx_A D-ribulose-5-phosphate 35.6 77 0.0026 30.5 7.1 83 51-137 109-201 (227)
325 3pxx_A Carveol dehydrogenase; 35.6 1.5E+02 0.0053 27.9 9.4 82 31-116 9-107 (287)
326 3huu_A Transcription regulator 35.5 1.3E+02 0.0044 28.6 8.8 67 41-116 39-114 (305)
327 4fyk_A Deoxyribonucleoside 5'- 35.0 1.9E+02 0.0066 26.2 9.3 102 41-153 17-141 (152)
328 4egb_A DTDP-glucose 4,6-dehydr 34.9 1.7E+02 0.0057 28.4 9.7 33 28-60 20-54 (346)
329 2x6q_A Trehalose-synthase TRET 34.8 3.4E+02 0.012 26.7 12.6 107 32-154 262-379 (416)
330 3bbl_A Regulatory protein of L 34.8 1.6E+02 0.0056 27.6 9.3 64 44-116 26-95 (287)
331 3hp4_A GDSL-esterase; psychrot 34.7 73 0.0025 27.7 6.4 81 32-116 2-111 (185)
332 3gnn_A Nicotinate-nucleotide p 34.6 2E+02 0.0069 29.0 10.2 65 60-134 214-278 (298)
333 1rpx_A Protein (ribulose-phosp 34.6 35 0.0012 32.2 4.4 58 78-136 140-206 (230)
334 1qpo_A Quinolinate acid phosph 34.5 1.3E+02 0.0043 30.1 8.7 95 34-135 167-267 (284)
335 2fn9_A Ribose ABC transporter, 34.5 2.7E+02 0.0092 25.9 10.8 65 45-116 21-91 (290)
336 1qo2_A Molecule: N-((5-phospho 34.5 75 0.0026 30.0 6.8 78 64-147 145-239 (241)
337 3tr6_A O-methyltransferase; ce 34.4 1.8E+02 0.006 26.4 9.2 69 32-102 89-162 (225)
338 1ujp_A Tryptophan synthase alp 34.4 1.3E+02 0.0044 29.7 8.7 85 45-137 133-229 (271)
339 3p9n_A Possible methyltransfer 34.2 1.7E+02 0.0058 25.9 8.9 69 32-102 67-139 (189)
340 3lkb_A Probable branched-chain 34.1 1.6E+02 0.0055 29.0 9.5 83 33-121 144-237 (392)
341 4e6p_A Probable sorbitol dehyd 34.0 2.7E+02 0.0094 26.0 10.8 81 32-116 8-90 (259)
342 3tb6_A Arabinose metabolism tr 33.9 1.7E+02 0.0057 27.3 9.2 67 44-116 33-107 (298)
343 3l6u_A ABC-type sugar transpor 33.8 1.1E+02 0.0039 28.6 8.0 65 46-117 28-98 (293)
344 3h2s_A Putative NADH-flavin re 33.7 51 0.0017 29.9 5.3 56 33-91 1-57 (224)
345 3qiv_A Short-chain dehydrogena 33.4 2.2E+02 0.0074 26.4 9.9 84 29-116 6-94 (253)
346 1tqj_A Ribulose-phosphate 3-ep 33.4 62 0.0021 30.9 6.0 86 48-137 104-201 (230)
347 2p9j_A Hypothetical protein AQ 33.3 1.7E+02 0.0058 25.0 8.5 41 94-138 42-82 (162)
348 4fzr_A SSFS6; structural genom 33.3 1.1E+02 0.0036 30.5 8.0 76 29-115 12-151 (398)
349 2o23_A HADH2 protein; HSD17B10 33.0 1.5E+02 0.005 27.6 8.6 85 28-116 8-94 (265)
350 4dqx_A Probable oxidoreductase 32.9 2.5E+02 0.0085 26.8 10.5 85 28-116 23-109 (277)
351 3zv4_A CIS-2,3-dihydrobiphenyl 32.9 2.3E+02 0.0078 27.1 10.1 83 30-116 3-87 (281)
352 4gnr_A ABC transporter substra 32.7 2.5E+02 0.0085 27.1 10.5 89 33-127 145-241 (353)
353 3e3m_A Transcriptional regulat 32.7 1.4E+02 0.005 29.1 8.9 63 44-115 88-156 (355)
354 3oy2_A Glycosyltransferase B73 32.6 1.3E+02 0.0044 29.8 8.5 108 32-154 215-355 (413)
355 3rhb_A ATGRXC5, glutaredoxin-C 32.4 97 0.0033 25.4 6.4 73 42-116 6-81 (113)
356 3m2p_A UDP-N-acetylglucosamine 32.3 2.1E+02 0.0073 27.2 9.9 31 32-62 2-32 (311)
357 1vcf_A Isopentenyl-diphosphate 32.3 1.7E+02 0.006 29.2 9.5 72 63-139 193-288 (332)
358 2avd_A Catechol-O-methyltransf 32.2 2.2E+02 0.0074 25.8 9.5 69 32-102 94-167 (229)
359 3i23_A Oxidoreductase, GFO/IDH 32.0 72 0.0025 31.9 6.5 104 32-149 2-110 (349)
360 3i1j_A Oxidoreductase, short c 31.8 1.5E+02 0.0052 27.3 8.4 84 31-116 13-102 (247)
361 2ehd_A Oxidoreductase, oxidore 31.8 1.2E+02 0.0042 27.7 7.7 80 32-116 5-86 (234)
362 2ho3_A Oxidoreductase, GFO/IDH 31.7 3.7E+02 0.013 26.1 12.8 100 32-148 1-106 (325)
363 1jvn_A Glutamine, bifunctional 31.4 2.5E+02 0.0087 30.4 11.2 78 65-147 454-542 (555)
364 3r8r_A Transaldolase; pentose 31.4 83 0.0029 30.3 6.5 84 49-138 95-187 (212)
365 1es9_A PAF-AH, platelet-activa 31.3 2.3E+02 0.008 25.7 9.6 83 31-117 37-139 (232)
366 3khj_A Inosine-5-monophosphate 31.2 1.5E+02 0.0051 30.5 8.9 65 66-136 107-172 (361)
367 1h6d_A Precursor form of gluco 30.6 1.2E+02 0.004 31.6 8.1 105 29-148 80-194 (433)
368 2iuy_A Avigt4, glycosyltransfe 30.6 88 0.003 30.2 6.7 107 32-153 188-307 (342)
369 2gek_A Phosphatidylinositol ma 30.5 1.4E+02 0.0049 29.1 8.4 31 31-61 19-57 (406)
370 3iwp_A Copper homeostasis prot 30.5 1.2E+02 0.0042 30.5 7.8 73 60-136 44-130 (287)
371 4iin_A 3-ketoacyl-acyl carrier 30.4 2.1E+02 0.0073 27.0 9.4 83 30-116 27-115 (271)
372 1o2d_A Alcohol dehydrogenase, 30.4 87 0.003 32.0 6.9 79 33-116 41-148 (371)
373 3hut_A Putative branched-chain 30.4 2E+02 0.007 27.6 9.4 85 33-123 140-235 (358)
374 1f0k_A MURG, UDP-N-acetylgluco 30.3 2.2E+02 0.0077 27.3 9.7 31 33-63 7-41 (364)
375 3h8q_A Thioredoxin reductase 3 30.2 1.8E+02 0.006 24.1 7.8 72 42-116 4-78 (114)
376 3abi_A Putative uncharacterize 30.2 1.2E+02 0.0042 30.4 8.0 98 26-139 10-109 (365)
377 1sby_A Alcohol dehydrogenase; 30.2 2.1E+02 0.0072 26.5 9.2 85 30-116 3-92 (254)
378 3h75_A Periplasmic sugar-bindi 30.1 2.1E+02 0.007 27.8 9.4 64 47-117 25-95 (350)
379 1i1q_B Anthranilate synthase c 30.1 55 0.0019 29.9 4.9 51 33-84 1-54 (192)
380 3sg0_A Extracellular ligand-bi 30.1 1.1E+02 0.0037 29.8 7.4 85 33-123 160-255 (386)
381 1kjq_A GART 2, phosphoribosylg 30.0 1.6E+02 0.0053 29.5 8.7 32 31-63 10-41 (391)
382 2bdq_A Copper homeostasis prot 30.0 1.2E+02 0.0042 29.4 7.5 92 41-136 102-206 (224)
383 1i4n_A Indole-3-glycerol phosp 29.9 2.6E+02 0.009 27.3 10.0 88 45-137 139-230 (251)
384 3u9l_A 3-oxoacyl-[acyl-carrier 29.8 1.8E+02 0.0061 28.8 9.0 83 30-116 3-95 (324)
385 1f0k_A MURG, UDP-N-acetylgluco 29.8 91 0.0031 30.2 6.7 62 79-151 255-322 (364)
386 3hcw_A Maltose operon transcri 29.8 1.1E+02 0.0037 29.1 7.1 68 40-116 23-99 (295)
387 3vk5_A MOEO5; TIM barrel, tran 29.8 1.1E+02 0.0038 30.8 7.3 59 78-138 199-257 (286)
388 2ydy_A Methionine adenosyltran 29.8 1.7E+02 0.0057 27.9 8.6 31 33-63 3-33 (315)
389 3mil_A Isoamyl acetate-hydroly 29.7 1.5E+02 0.0051 26.7 7.8 81 32-117 3-122 (240)
390 3ipz_A Monothiol glutaredoxin- 29.7 1.1E+02 0.0038 25.4 6.3 84 41-130 4-97 (109)
391 3sho_A Transcriptional regulat 29.6 2.4E+02 0.0083 24.9 9.1 94 34-138 41-139 (187)
392 1sui_A Caffeoyl-COA O-methyltr 29.5 2.9E+02 0.0098 26.0 10.1 69 32-102 104-178 (247)
393 3dqp_A Oxidoreductase YLBE; al 29.5 2.8E+02 0.0095 24.9 9.7 28 34-61 2-29 (219)
394 2xxa_A Signal recognition part 29.3 1.1E+02 0.0037 32.2 7.6 53 32-86 129-191 (433)
395 1jcn_A Inosine monophosphate d 29.3 1.9E+02 0.0064 30.8 9.6 67 65-136 256-323 (514)
396 3e03_A Short chain dehydrogena 29.2 3.6E+02 0.012 25.5 10.9 84 29-116 3-98 (274)
397 3c1r_A Glutaredoxin-1; oxidize 29.2 1.6E+02 0.0053 24.7 7.3 73 41-116 11-90 (118)
398 3slg_A PBGP3 protein; structur 29.2 1.8E+02 0.006 28.6 8.8 33 30-62 22-55 (372)
399 3md9_A Hemin-binding periplasm 29.2 1.3E+02 0.0046 28.1 7.6 39 69-116 52-90 (255)
400 2gk3_A Putative cytoplasmic pr 29.2 60 0.0021 31.5 5.2 63 46-117 43-127 (256)
401 2fep_A Catabolite control prot 29.0 2.2E+02 0.0077 26.7 9.3 63 45-116 35-103 (289)
402 3ek2_A Enoyl-(acyl-carrier-pro 29.0 1.6E+02 0.0055 27.4 8.1 82 31-116 13-100 (271)
403 3dii_A Short-chain dehydrogena 28.9 2.2E+02 0.0075 26.5 9.0 80 33-116 3-83 (247)
404 3st7_A Capsular polysaccharide 28.8 1.8E+02 0.0062 28.7 8.8 80 33-117 1-95 (369)
405 3kvo_A Hydroxysteroid dehydrog 28.8 2.7E+02 0.0092 27.9 10.2 106 5-116 20-137 (346)
406 3sc4_A Short chain dehydrogena 28.8 3.2E+02 0.011 26.1 10.4 84 29-116 6-101 (285)
407 3c3y_A Pfomt, O-methyltransfer 28.8 2.4E+02 0.0082 26.3 9.3 69 32-102 95-169 (237)
408 3oti_A CALG3; calicheamicin, T 28.7 1.8E+02 0.0062 28.8 8.9 34 31-64 19-56 (398)
409 3ip3_A Oxidoreductase, putativ 28.6 2.2E+02 0.0076 28.0 9.5 101 32-150 2-113 (337)
410 2fpo_A Methylase YHHF; structu 28.5 1.3E+02 0.0045 27.2 7.2 67 33-102 78-146 (202)
411 2qfm_A Spermine synthase; sper 28.5 2.5E+02 0.0087 29.0 10.0 68 33-100 212-296 (364)
412 3dzc_A UDP-N-acetylglucosamine 28.5 1.5E+02 0.0052 30.1 8.4 102 33-155 264-368 (396)
413 4g92_A HAPB protein; transcrip 28.4 58 0.002 25.8 3.9 26 488-513 36-62 (64)
414 3s3t_A Nucleotide-binding prot 28.4 2.3E+02 0.0079 23.4 8.3 50 61-114 91-145 (146)
415 2b4q_A Rhamnolipids biosynthes 28.3 3.4E+02 0.012 25.8 10.5 88 27-116 24-113 (276)
416 3s55_A Putative short-chain de 28.3 3.4E+02 0.012 25.6 10.5 82 31-116 9-107 (281)
417 1qap_A Quinolinic acid phospho 28.3 3.4E+02 0.012 27.1 10.7 91 34-134 181-277 (296)
418 3ak4_A NADH-dependent quinucli 28.2 3.4E+02 0.012 25.2 10.3 83 30-116 10-94 (263)
419 3oig_A Enoyl-[acyl-carrier-pro 28.1 3.1E+02 0.011 25.5 10.1 84 31-116 6-95 (266)
420 2ift_A Putative methylase HI07 28.1 84 0.0029 28.6 5.8 68 33-102 77-149 (201)
421 3e8x_A Putative NAD-dependent 28.0 66 0.0023 29.6 5.1 56 29-87 18-75 (236)
422 3egc_A Putative ribose operon 27.9 1.3E+02 0.0044 28.3 7.3 64 45-117 27-96 (291)
423 1pii_A N-(5'phosphoribosyl)ant 27.8 4E+02 0.014 28.3 11.6 86 45-136 146-235 (452)
424 3llv_A Exopolyphosphatase-rela 27.6 2.7E+02 0.0092 23.3 8.8 28 34-62 8-35 (141)
425 3gjy_A Spermidine synthase; AP 27.6 1.3E+02 0.0045 30.4 7.5 70 32-103 113-189 (317)
426 3dr5_A Putative O-methyltransf 27.6 1.2E+02 0.0039 28.4 6.7 67 32-102 81-151 (221)
427 3h5l_A Putative branched-chain 27.5 2.2E+02 0.0075 28.4 9.3 69 33-104 165-244 (419)
428 2fvy_A D-galactose-binding per 27.4 2.1E+02 0.0071 26.9 8.7 65 45-117 21-93 (309)
429 3ctg_A Glutaredoxin-2; reduced 27.4 1.8E+02 0.0061 25.0 7.5 73 41-116 23-102 (129)
430 3m1a_A Putative dehydrogenase; 27.3 1.5E+02 0.0051 28.1 7.6 82 31-116 4-87 (281)
431 2c07_A 3-oxoacyl-(acyl-carrier 27.3 3.8E+02 0.013 25.3 10.7 85 28-116 40-129 (285)
432 3gv0_A Transcriptional regulat 27.3 1.2E+02 0.0042 28.5 7.0 66 42-116 23-97 (288)
433 3o74_A Fructose transport syst 27.3 1.4E+02 0.0047 27.5 7.2 65 45-117 21-91 (272)
434 2gl5_A Putative dehydratase pr 27.2 1.8E+02 0.0062 29.8 8.7 78 64-146 230-308 (410)
435 1zco_A 2-dehydro-3-deoxyphosph 27.1 3.5E+02 0.012 26.4 10.4 68 67-138 148-229 (262)
436 3lop_A Substrate binding perip 26.9 1.2E+02 0.004 29.6 7.0 75 34-114 143-228 (364)
437 3ius_A Uncharacterized conserv 26.9 53 0.0018 31.1 4.3 52 32-87 5-57 (286)
438 2yxd_A Probable cobalt-precorr 26.8 2.9E+02 0.01 23.4 10.3 65 31-103 56-122 (183)
439 1hdc_A 3-alpha, 20 beta-hydrox 26.8 3.7E+02 0.013 25.0 10.3 82 31-116 4-87 (254)
440 2uva_G Fatty acid synthase bet 26.6 1.1E+02 0.0037 38.9 7.9 84 47-136 683-794 (2060)
441 1p4c_A L(+)-mandelate dehydrog 26.6 1.6E+02 0.0055 30.3 8.2 86 45-136 214-306 (380)
442 3tqv_A Nicotinate-nucleotide p 26.5 1.3E+02 0.0044 30.3 7.1 67 80-150 170-238 (287)
443 3l0g_A Nicotinate-nucleotide p 26.5 2E+02 0.0069 29.1 8.6 66 59-134 211-276 (300)
444 3i45_A Twin-arginine transloca 26.5 3.2E+02 0.011 26.7 10.2 79 33-115 143-234 (387)
445 1ja9_A 4HNR, 1,3,6,8-tetrahydr 26.4 2.5E+02 0.0085 26.1 9.0 84 28-115 17-106 (274)
446 2iks_A DNA-binding transcripti 26.4 3.4E+02 0.011 25.4 10.0 63 46-116 40-108 (293)
447 3dbi_A Sugar-binding transcrip 26.4 4.4E+02 0.015 25.3 11.4 65 44-116 81-151 (338)
448 2rgy_A Transcriptional regulat 26.3 2.1E+02 0.0073 26.8 8.5 63 45-116 27-98 (290)
449 2ioy_A Periplasmic sugar-bindi 26.3 2.1E+02 0.0071 26.8 8.4 63 46-116 21-90 (283)
450 1zk4_A R-specific alcohol dehy 26.0 3.4E+02 0.012 24.8 9.8 82 31-116 5-90 (251)
451 1twd_A Copper homeostasis prot 26.0 2.1E+02 0.0071 28.4 8.4 90 41-135 99-196 (256)
452 3tfw_A Putative O-methyltransf 25.8 2.5E+02 0.0087 26.2 8.9 79 32-115 88-169 (248)
453 4e38_A Keto-hydroxyglutarate-a 25.7 2.3E+02 0.0079 27.4 8.6 76 52-136 123-201 (232)
454 2wsb_A Galactitol dehydrogenas 25.7 3.9E+02 0.013 24.4 10.3 82 30-116 9-93 (254)
455 3awd_A GOX2181, putative polyo 25.7 3.9E+02 0.013 24.5 10.8 82 31-116 12-98 (260)
456 1uf3_A Hypothetical protein TT 25.7 1.8E+02 0.0062 26.0 7.6 66 31-119 4-74 (228)
457 2rjo_A Twin-arginine transloca 25.6 2.6E+02 0.0088 26.9 9.1 63 46-116 25-96 (332)
458 3m9w_A D-xylose-binding peripl 25.6 2.5E+02 0.0086 26.6 9.0 66 44-116 20-91 (313)
459 2rdx_A Mandelate racemase/muco 25.6 1.2E+02 0.0041 30.9 6.9 73 64-144 201-274 (379)
460 3czc_A RMPB; alpha/beta sandwi 25.6 2.9E+02 0.01 23.0 9.0 88 22-124 8-102 (110)
461 3tqv_A Nicotinate-nucleotide p 25.5 1.5E+02 0.0051 29.8 7.4 66 60-135 203-268 (287)
462 2dri_A D-ribose-binding protei 25.4 1.9E+02 0.0065 26.9 7.9 68 41-116 13-90 (271)
463 3op4_A 3-oxoacyl-[acyl-carrier 25.3 3.3E+02 0.011 25.3 9.7 82 31-116 8-91 (248)
464 2pnf_A 3-oxoacyl-[acyl-carrier 25.3 2.7E+02 0.0093 25.3 8.9 82 31-116 6-93 (248)
465 1cyd_A Carbonyl reductase; sho 25.2 1.4E+02 0.0048 27.3 6.8 79 30-116 5-84 (244)
466 3v8b_A Putative dehydrogenase, 25.1 3.3E+02 0.011 26.0 9.8 87 28-116 24-113 (283)
467 2px0_A Flagellar biosynthesis 25.1 1.6E+02 0.0054 29.1 7.5 59 32-93 134-195 (296)
468 2h6r_A Triosephosphate isomera 25.0 2.6E+02 0.009 26.2 8.8 79 53-136 108-198 (219)
469 4ef8_A Dihydroorotate dehydrog 25.0 79 0.0027 32.6 5.4 57 94-152 265-328 (354)
470 3v2g_A 3-oxoacyl-[acyl-carrier 25.0 3.1E+02 0.011 26.0 9.5 81 32-116 31-117 (271)
471 1vl0_A DTDP-4-dehydrorhamnose 24.9 3.6E+02 0.012 25.2 9.9 56 31-88 11-73 (292)
472 3ksu_A 3-oxoacyl-acyl carrier 24.9 3.3E+02 0.011 25.6 9.6 83 30-116 9-99 (262)
473 1vs1_A 3-deoxy-7-phosphoheptul 24.8 2.1E+02 0.007 28.4 8.3 71 65-139 161-245 (276)
474 3skv_A SSFX3; jelly roll, GDSL 24.8 1.3E+02 0.0044 31.2 7.0 79 32-117 185-292 (385)
475 4eso_A Putative oxidoreductase 24.8 3.8E+02 0.013 25.1 10.0 81 32-116 8-90 (255)
476 3paj_A Nicotinate-nucleotide p 24.8 3.3E+02 0.011 27.7 9.9 92 34-135 204-301 (320)
477 2ekc_A AQ_1548, tryptophan syn 24.7 3.5E+02 0.012 26.1 9.8 95 36-137 127-234 (262)
478 2o6l_A UDP-glucuronosyltransfe 24.5 3.1E+02 0.011 23.5 8.7 69 78-156 86-156 (170)
479 3llv_A Exopolyphosphatase-rela 24.5 1.1E+02 0.0039 25.7 5.6 93 32-136 29-122 (141)
480 2bgk_A Rhizome secoisolaricire 24.4 4.3E+02 0.015 24.5 11.0 84 29-116 13-100 (278)
481 1j8m_F SRP54, signal recogniti 24.4 1.3E+02 0.0044 29.8 6.8 53 32-86 126-188 (297)
482 4egf_A L-xylulose reductase; s 24.3 4.5E+02 0.015 24.7 11.0 85 28-116 16-106 (266)
483 3nav_A Tryptophan synthase alp 24.3 2.7E+02 0.0094 27.4 9.0 98 35-138 129-238 (271)
484 4dmm_A 3-oxoacyl-[acyl-carrier 24.3 3.2E+02 0.011 25.9 9.4 82 31-116 27-114 (269)
485 8abp_A L-arabinose-binding pro 24.1 2.5E+02 0.0085 26.3 8.5 64 46-116 22-90 (306)
486 2ew8_A (S)-1-phenylethanol deh 24.1 4.1E+02 0.014 24.5 10.0 82 31-116 6-90 (249)
487 3rwb_A TPLDH, pyridoxal 4-dehy 24.1 3.4E+02 0.012 25.2 9.4 82 31-116 5-88 (247)
488 2cvh_A DNA repair and recombin 24.1 1.4E+02 0.0047 26.8 6.4 85 33-117 46-155 (220)
489 1rpx_A Protein (ribulose-phosp 24.1 2.5E+02 0.0086 26.1 8.4 71 64-139 24-100 (230)
490 3ged_A Short-chain dehydrogena 24.0 2.6E+02 0.009 26.9 8.7 79 34-116 4-83 (247)
491 3ioy_A Short-chain dehydrogena 24.0 3.1E+02 0.011 26.8 9.5 83 32-116 8-95 (319)
492 1id1_A Putative potassium chan 23.9 3E+02 0.01 23.5 8.4 53 78-135 71-123 (153)
493 3ezl_A Acetoacetyl-COA reducta 23.8 2.3E+02 0.0079 26.2 8.1 82 31-116 12-99 (256)
494 1usg_A Leucine-specific bindin 23.8 2.4E+02 0.0082 26.9 8.4 62 47-114 157-225 (346)
495 2nv1_A Pyridoxal biosynthesis 23.7 74 0.0025 31.5 4.8 42 93-137 195-238 (305)
496 1yde_A Retinal dehydrogenase/r 23.7 3.2E+02 0.011 25.9 9.2 81 31-116 8-90 (270)
497 2i7c_A Spermidine synthase; tr 23.7 2E+02 0.0068 27.9 7.9 69 32-103 102-181 (283)
498 2dwc_A PH0318, 433AA long hypo 23.6 2.3E+02 0.0078 28.9 8.7 31 32-63 19-49 (433)
499 3edm_A Short chain dehydrogena 23.6 2.8E+02 0.0095 26.1 8.7 82 31-116 7-94 (259)
500 2f6u_A GGGPS, (S)-3-O-geranylg 23.6 1.5E+02 0.0052 28.8 6.8 60 66-136 23-83 (234)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.93 E-value=9.3e-26 Score=205.53 Aligned_cols=122 Identities=24% Similarity=0.483 Sum_probs=114.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++|||||||++.+|..|..+|+..||+ |.+|.+|.+|++.++.. .||+||+|+.||+|||++++++|++....+++
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCC
Confidence 4689999999999999999999999996 66899999999999987 89999999999999999999999987767889
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+.+...+|+++||+|||.|||+.++|...|++++++
T Consensus 89 pvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 89 PVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999887654
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.88 E-value=5.3e-22 Score=172.33 Aligned_cols=120 Identities=25% Similarity=0.401 Sum_probs=111.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+.+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+||
T Consensus 2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~--~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF--TPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB--CCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCCCCcHHHHHHHHHhcccccCCCE
Confidence 35899999999999999999999999999999999999999776 8999999999999999999999997655578999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|++|+..+.+...+++++||++||.||++.++|...++++++
T Consensus 80 i~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 80 IVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999987753
No 3
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.88 E-value=5.6e-22 Score=175.31 Aligned_cols=125 Identities=22% Similarity=0.404 Sum_probs=114.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|++.+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+
T Consensus 2 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~ 79 (136)
T 3t6k_A 2 MKPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN--LPDALICDVLLPGIDGYTLCKRVRQHPLTKTL 79 (136)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSGGGTTC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCc
Confidence 5678999999999999999999999999999999999999999876 89999999999999999999999985445689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
|||++|+..+.....+++++||++||.||++.++|...+++++++..
T Consensus 80 pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 80 PILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp CEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred cEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999998876543
No 4
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.87 E-value=3.6e-21 Score=200.54 Aligned_cols=171 Identities=22% Similarity=0.308 Sum_probs=130.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~-g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
|++++||||||++.++..|..+|... +|+ |..+.++.+|++.+... .|||||+|+.||+++|++++++|++..
T Consensus 1 M~~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~--~pDlVllDi~mp~~dGlell~~l~~~~--- 75 (349)
T 1a2o_A 1 MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF--NPDVLTLDVEMPRMDGLDFLEKLMRLR--- 75 (349)
T ss_dssp CCCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEECCCSSSCHHHHHHHHHHSS---
T ss_pred CCCCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc--CCCEEEEECCCCCCCHHHHHHHHHhcC---
Confidence 45789999999999999999999986 898 55999999999999887 799999999999999999999999863
Q ss_pred CceEEEEecCCCH--HHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHHHHHHHHHhhhhhhhccccccccccCC
Q 008761 108 RIPVIMMSAQDEV--SVVVKCLRLGAADYLVKPLRT---------NELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASD 176 (554)
Q Consensus 108 ~iPIIVLSs~~d~--e~~~eAL~aGA~DyL~KP~~~---------eeL~~~L~~llr~~rl~~~~~~~~~~~~~~~v~ss 176 (554)
++|||++|+..+. +...+++++||+|||.||++. ++|...++.+.+.. . .. . ...
T Consensus 76 p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~-------~--~~--~---~~~ 141 (349)
T 1a2o_A 76 PMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR-------I--AA--H---KPM 141 (349)
T ss_dssp CCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC-------G--GG--G---SCC
T ss_pred CCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh-------c--cc--C---CCc
Confidence 3999999998765 458899999999999999983 44444444432211 0 00 0 000
Q ss_pred CCCCCCCcceeeccCCccccccCCCCCCCCCCCcccCCCCccEEEEEccCcchhcccccccccCCCCCcc
Q 008761 177 PSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASECGPDVPG 246 (554)
Q Consensus 177 ps~a~s~~~vLi~get~~~~~~~~~~~~~~~t~~e~~s~~~~iVaIGASTGGp~AL~~I~L~~lPaD~Pp 246 (554)
+. ... . . .. . .. ....+++||+||||++||+.+ |..+|++|++
T Consensus 142 ~~----~~~------------~--~----~~--~-~~-~~~~vv~iGaS~gG~~al~~~-l~~lp~~~~~ 184 (349)
T 1a2o_A 142 AA----PTT------------L--K----AG--P-LL-SSEKLIAIGASTGGTEAIRHV-LQPLPLSSPA 184 (349)
T ss_dssp CC----CCC------------C--C----CC--C-CC-CTTCEEEEEECTTHHHHHHHH-HTTCCTTCCE
T ss_pred cc----cCC------------C--C----Cc--c-cC-CCceEEEEecCcccHHHHHHH-HHhCCCCCCe
Confidence 00 000 0 0 00 0 00 224699999999999999999 9999999875
No 5
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=4.5e-21 Score=165.64 Aligned_cols=117 Identities=28% Similarity=0.447 Sum_probs=109.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
..+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++. ..+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlii~D~~~p~~~g~~~~~~lr~~---~~~~i 76 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDGVEVCREVRKK---YDMPI 76 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCSEEEEETTSTTTHHHHHHHHHHTT---CCSCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCE
Confidence 35899999999999999999999999999999999999999876 89999999999999999999999874 47899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|++|+..+.....+++++||++||.||++.++|...++.+++
T Consensus 77 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 77 IMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887764
No 6
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.86 E-value=1.5e-20 Score=164.68 Aligned_cols=126 Identities=23% Similarity=0.337 Sum_probs=115.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|++++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. +.+
T Consensus 1 m~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~ 76 (132)
T 3crn_A 1 MSLKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDMEGTELLEKAHKLR--PGM 76 (132)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSBHHHHHHHHHHHC--TTS
T ss_pred CCccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhC--CCC
Confidence 3467999999999999999999999999999999999999999876 799999999999999999999999754 679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~~ 159 (554)
|||++|+..+.+...+++++||++||.||++.++|...++.++++.....
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~~~ 126 (132)
T 3crn_A 77 KKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEKEG 126 (132)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999999999999887665543
No 7
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.86 E-value=1.6e-23 Score=188.45 Aligned_cols=116 Identities=15% Similarity=0.280 Sum_probs=103.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
|..+++|||||||++.++..|..+|+..||+|. +|.+|.+|++++... .||+||+|+.||+|||++++++|++
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~--~~DlvllDi~mP~~~G~el~~~lr~---- 77 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKG--QFDIAIIDVNLDGEPSYPVADILAE---- 77 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHC--CSSEEEECSSSSSCCSHHHHHHHHH----
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHc----
Confidence 444678999999999999999999999999986 899999999999887 8999999999999999999999996
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
.++|||++|++.+... +.++|+.+||.|||+.++|...|.+++
T Consensus 78 ~~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 78 RNVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp TCCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred CCCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 4689999999876543 456899999999999999998876653
No 8
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.85 E-value=1.6e-20 Score=163.86 Aligned_cols=122 Identities=22% Similarity=0.467 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
.+++||||||++..+..|..+|+..||. |..+.++.+|++.+... ..||+||+|+.||+++|++++++|++....+.+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 4679999999999999999999999985 88999999999988764 269999999999999999999999976555789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|||++|+..+.....+++++||++||.||++.++|...++.++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987753
No 9
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.85 E-value=4.1e-21 Score=179.11 Aligned_cols=124 Identities=16% Similarity=0.282 Sum_probs=114.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|.+++||||||++.++..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~ 80 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAE--KFEFITVXLHLGNDSGLSLIAPLCDLQ--PDA 80 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTS--CCSEEEECSEETTEESHHHHHHHHHHC--TTC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeccCCCccHHHHHHHHHhcC--CCC
Confidence 5678999999999999999999999999999999999999999766 799999999999999999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
|||++|+..+.+...+|+++||++||.||++.++|...|+.+++....
T Consensus 81 ~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 128 (184)
T 3rqi_A 81 RILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQA 128 (184)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999888776543
No 10
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.85 E-value=4.3e-20 Score=162.89 Aligned_cols=128 Identities=20% Similarity=0.382 Sum_probs=116.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|++++||||||++..+..|..+|...||+|..+.++.+|++.+......||+||+|+.||+++|+++++.|+... +.+
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 78 (143)
T 3jte_A 1 MSLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKIT--PHM 78 (143)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHC--TTC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCC
Confidence 567899999999999999999999999999999999999999984223799999999999999999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~~ 159 (554)
|||++|+..+.+...+++++||++||.||++.++|...|+.++++.+...
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~ 128 (143)
T 3jte_A 79 AVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLLM 128 (143)
T ss_dssp EEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988776543
No 11
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.85 E-value=3.7e-20 Score=160.22 Aligned_cols=120 Identities=15% Similarity=0.336 Sum_probs=111.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|.+.+||||||++..+..+..+|...||+|..+.++.++++.+... .||+||+|+.||+++|++++++|++.. +.+
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 76 (126)
T 1dbw_A 1 MQDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLK--INI 76 (126)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTT--CCC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCC
Confidence 3567999999999999999999999999999999999999998765 799999999999999999999999754 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|||++|+..+.....++++.||++||.||++.++|...++.+++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 77 PSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887754
No 12
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.85 E-value=3.3e-20 Score=163.28 Aligned_cols=118 Identities=22% Similarity=0.422 Sum_probs=107.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHHHh-----cCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNA-----EGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e-V~~A~dg~EALe~L~~-----~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
.++||||||++..+..|..+|...|+. |..+.++.+|++.+.. . .|||||+|+.||+++|++++++|++..
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~- 78 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGE--NYNMIFMDVQMPKVDGLLSTKMIRRDL- 78 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTC--CCSEEEECSCCSSSCHHHHHHHHHHHS-
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCC--CCCEEEEeCCCCCCChHHHHHHHHhhc-
Confidence 468999999999999999999988874 7899999999999876 4 799999999999999999999999632
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 106 ~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
...+|||++|+..+.....+++++||++||.||++.++|...++.++
T Consensus 79 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 125 (133)
T 2r25_B 79 GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFC 125 (133)
T ss_dssp CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999887764
No 13
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.85 E-value=2.9e-20 Score=164.50 Aligned_cols=128 Identities=13% Similarity=0.297 Sum_probs=114.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~e--V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
|.|.+++||||||++..+..|..+|...|+. |..+.++.+|++.+... .||+||+|+.||+++|+++++.|++...
T Consensus 1 M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~ 78 (144)
T 3kht_A 1 MSLRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSAVRKPGA 78 (144)
T ss_dssp ----CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHHHHSSST
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhccc
Confidence 3456789999999999999999999999876 88999999999999766 8999999999999999999999998444
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHHHH
Q 008761 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 106 ~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~-~~eeL~~~L~~llr~~rl 157 (554)
.+.+|||++|+..+.+...+++++||++||.||+ +.++|...|+.++++...
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999 999999999999887543
No 14
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.2e-20 Score=165.70 Aligned_cols=123 Identities=27% Similarity=0.450 Sum_probs=107.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhc--cCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD--KELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~--~~~~ 107 (554)
+..++||||||++..+..|..+|+..||.|..+.++++|++.+... .||+||+|+.||+++|++++++|+.. ...+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEE--DYDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 3468999999999999999999999999999999999999999876 89999999999999999999999853 2235
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.+|||++|+..+.+...+++++||++||.||+..++|...+..+...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999887543
No 15
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.84 E-value=4.2e-20 Score=166.56 Aligned_cols=123 Identities=24% Similarity=0.436 Sum_probs=114.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+++||||||++..+..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|+++++.|+.....+.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 468999999999999999999999999999999999999999766 899999999999999999999999865557899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
||++|+..+.+...+++++||++||.||++.++|...|+.+++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887654
No 16
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.84 E-value=2.4e-20 Score=160.63 Aligned_cols=118 Identities=25% Similarity=0.378 Sum_probs=109.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++.+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|
T Consensus 2 m~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (124)
T 1srr_A 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE--RPDLVLLDMKIPGMDGIEILKRMKVID--ENIR 77 (124)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCTTCCHHHHHHHHHHHC--TTCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHHhC--CCCC
Confidence 457999999999999999999999999999999999999999876 799999999999999999999999764 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
||++|+..+.+...++++.||++||.||++.++|...+++++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 78 VIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHS
T ss_pred EEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887764
No 17
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.84 E-value=1.1e-19 Score=155.11 Aligned_cols=118 Identities=20% Similarity=0.396 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ii 76 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHTT--CCSCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 4899999999999999999999999999999999999999876 799999999999999999999999754 679999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887754
No 18
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.84 E-value=2e-20 Score=161.76 Aligned_cols=122 Identities=18% Similarity=0.198 Sum_probs=109.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|.+++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~ 78 (127)
T 3i42_A 1 MSLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRALPMEKTS 78 (127)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCC
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCC
Confidence 4578999999999999999999999999999999999999999877 79999999999999999999999986445789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+... .+++..||++||.||++.++|...+...++.
T Consensus 79 ~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 79 KFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 9999999888777 8899999999999999999999999877654
No 19
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.84 E-value=1.2e-19 Score=155.63 Aligned_cols=120 Identities=20% Similarity=0.395 Sum_probs=110.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|...+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++. +.+
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~---~~~ 75 (123)
T 1xhf_A 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKNGLLLARELREQ---ANV 75 (123)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHH---CCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhC---CCC
Confidence 3467999999999999999999998899999999999999999876 79999999999999999999999975 578
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+.....+++++||++||.||++.++|...++.++++
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 76 ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp EEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999988899999999999999999999999999887654
No 20
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.84 E-value=6.1e-20 Score=160.96 Aligned_cols=122 Identities=13% Similarity=0.255 Sum_probs=108.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g--~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.+++||||||++..+..|..+|...| +.|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~g~~~~~~l~~~~--~~ 77 (133)
T 3b2n_A 2 SLTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMTGLEVLAEIRKKH--LN 77 (133)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTT--CS
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHHHC--CC
Confidence 45799999999999999999998775 4567899999999999877 799999999999999999999999753 68
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
+|||++|+..+.....++++.||++||.||++.++|...+++++++..
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 78 IKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred CcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999988876543
No 21
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.84 E-value=1.4e-19 Score=162.33 Aligned_cols=124 Identities=22% Similarity=0.375 Sum_probs=116.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+++||||||++..+..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|+... +.+|
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 88 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMDGPTLLARIHQQY--PSTT 88 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHC--TTSE
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCcHHHHHHHHHhHC--CCCe
Confidence 468999999999999999999999999999999999999999877 899999999999999999999999854 7899
Q ss_pred EEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008761 111 VIMMSAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aG-A~DyL~KP~~~eeL~~~L~~llr~~rl~ 158 (554)
||++|+..+.+...++++.| |++||.||++.++|...|+.++++.+..
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 137 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHSE 137 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999 9999999999999999999998876553
No 22
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.84 E-value=8.8e-20 Score=157.59 Aligned_cols=122 Identities=21% Similarity=0.443 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~-eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
..++||||||++..+..+..+|...|| .|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++....+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 457899999999999999999998898 688999999999998765 79999999999999999999999975445689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888754
No 23
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1.1e-19 Score=160.71 Aligned_cols=121 Identities=22% Similarity=0.403 Sum_probs=112.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. +.+|||
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~--~~~~ii 80 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--KPQLIILDLKLPDMSGEDVLDWINQND--IPTSVI 80 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH--CCSEEEECSBCSSSBHHHHHHHHHHTT--CCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 4899999999999999999998899999999999999999877 799999999999999999999999754 679999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
++|+..+.+...++++.||++||.||++.++|...++.++++.+.
T Consensus 81 ~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 125 (137)
T 3cfy_A 81 IATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKL 125 (137)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876543
No 24
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.83 E-value=1.6e-19 Score=161.51 Aligned_cols=124 Identities=22% Similarity=0.354 Sum_probs=110.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhc-----CCCceEEEEecCCCCCcHHHHHHHHHhc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAE-----GSDIDLILAEVDLPMTKGLKMLKYITRD 103 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~-----~~~PDLILLDi~MP~mDGlElLr~Ir~~ 103 (554)
..++||||||++..+..|..+|...|+ .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.|++.
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 357999999999999999999998876 788999999999998741 1269999999999999999999999985
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
...+.+|||++|+..+.....+++++||++||.||++.++|...++.+++.
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 444689999999999989999999999999999999999999999888653
No 25
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.83 E-value=4.2e-20 Score=162.39 Aligned_cols=125 Identities=18% Similarity=0.361 Sum_probs=113.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 468999999999999999999999999999999999999999877 799999999999999999999999843457899
Q ss_pred EEEEecCCCHHHHH-HHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVV-KCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 111 IIVLSs~~d~e~~~-eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
||++|+..+..... ++++.||++||.||++.++|...|+.++++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 99999988777666 899999999999999999999999999876543
No 26
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.83 E-value=2.2e-19 Score=153.78 Aligned_cols=118 Identities=21% Similarity=0.421 Sum_probs=110.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
..+||||||++..+..|..+|...||.|..+.++.++++.+... .||+||+|+.||+++|+++++.|++ . +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~-~--~~~~i 76 (122)
T 1zgz_A 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDENGLMLTRALRE-R--STVGI 76 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHT-T--CCCEE
T ss_pred CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCChHHHHHHHHh-c--CCCCE
Confidence 46899999999999999999999999999999999999999876 7999999999999999999999997 2 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++|+..+.....+++++||++||.||++.++|...++.++++
T Consensus 77 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 77 ILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 9999999998899999999999999999999999999888754
No 27
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.83 E-value=1.6e-19 Score=161.41 Aligned_cols=125 Identities=18% Similarity=0.387 Sum_probs=111.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHh-------cCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNA-------EGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~-------~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
++++||||||++..+..|..+|...|+ +|..+.++.+|++.+.. ....|||||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 368999999999999999999999998 89999999999999961 123799999999999999999999999
Q ss_pred hccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
.....+.+|||++|+..+.+...+++++||++||.||++.++|...|+++.+..
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 854457899999999999999999999999999999999999999999885543
No 28
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.83 E-value=1.1e-19 Score=155.29 Aligned_cols=117 Identities=18% Similarity=0.405 Sum_probs=108.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+++||||||++..+..+..+|...||+ +..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKID--PNAK 77 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGCHHHHHHHHHHHC--TTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhhC--CCCe
Confidence 468999999999999999999999999 45899999999999877 799999999999999999999999864 6789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
||++|+..+.....++++.||++||.||++.++|...+++++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 78 IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998887653
No 29
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.83 E-value=1.5e-19 Score=153.73 Aligned_cols=116 Identities=31% Similarity=0.497 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..+...|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~---~~~~ii 76 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEIDGLEVAKTIRKT---SSVPIL 76 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHH---CCCCEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCCHHHHHHHHHhC---CCCCEE
Confidence 4899999999999999999999999999999999999999877 79999999999999999999999974 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
++|+..+.....++++.||++||.||++.++|...++.+++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 77 MLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 99999998889999999999999999999999999887764
No 30
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.83 E-value=3.8e-20 Score=162.86 Aligned_cols=122 Identities=19% Similarity=0.336 Sum_probs=112.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~--mDGlElLr~Ir~~~~~~~ 108 (554)
.+++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+ ++|++++++|++.. +.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~~~g~~~~~~l~~~~--~~ 80 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISD--DAIGMIIEAHLEDKKDSGIELLETLVKRG--FH 80 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCT--TEEEEEEETTGGGBTTHHHHHHHHHHHTT--CC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEeCcCCCCCccHHHHHHHHHhCC--CC
Confidence 357999999999999999999999999999999999999998765 7999999999999 99999999999864 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
+|||++|+..+.+...+++++||++||.||++.++|...|++++....
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999877653
No 31
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.83 E-value=1.2e-19 Score=158.89 Aligned_cols=124 Identities=20% Similarity=0.333 Sum_probs=115.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+++||||||++..+..|..+|...++.|..+.++.+|++.+... .|||||+|+.||+++|+++++.|++.. +.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ 81 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLGGLEMLDRIKAGG--AKPY 81 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTT--CCCE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCc
Confidence 368999999999999999999999889999999999999999887 799999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~ 158 (554)
||++|+..+.+...+++++||++||.||++.++|...|+++++.....
T Consensus 82 ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 82 VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998876543
No 32
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.83 E-value=1.2e-19 Score=157.85 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=107.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++.+||||||++..+..|..+|. .+|+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 46899999999999999999998 789999999999999999877 799999999999999999999999865456899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
||++|+..+... .++++.||++||.||++.++|...|+.++++..
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 999999888777 899999999999999999999999999987654
No 33
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.83 E-value=4.3e-20 Score=163.34 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=112.0
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CcHHHHHHHHHhccCC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKEL 106 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~-mDGlElLr~Ir~~~~~ 106 (554)
|.|.+++||||||++..+..|..+|...||+|..+.++.+|++.+... ..|||||+|+.||+ ++|+++++.|++.
T Consensus 1 M~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~--- 76 (140)
T 3h5i_A 1 MSLKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQI--- 76 (140)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHH---
T ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhC---
Confidence 345678999999999999999999999999999999999999999762 27999999999995 9999999999975
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~ 158 (554)
+.+|||++|+..+.+...+++++||++||.||++.++|...|+.++++.+..
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 77 SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999888777888999999999999999999999999998876543
No 34
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.5e-19 Score=176.29 Aligned_cols=122 Identities=22% Similarity=0.412 Sum_probs=114.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+.+++||||||++.++..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~ 96 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARET--RPDAVILDVXMPGMDGFGVLRRLRADG--IDA 96 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHTT--CCC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCC
Confidence 3578999999999999999999999999999999999999999887 799999999999999999999999864 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|||++|+..+.+...+++++||++||.||++.++|...|+.++++.
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 97 PALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp CEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988754
No 35
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.83 E-value=4.1e-20 Score=162.78 Aligned_cols=127 Identities=23% Similarity=0.390 Sum_probs=106.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|.+.+||||||++..+..|..+|... +.|..+.++.+|++.+... .|||||+|+.||+++|++++++|+.....+.+
T Consensus 1 M~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 77 (140)
T 3n53_A 1 MSLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC------CHHHHHHTSTTCTTC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCC
Confidence 45789999999999999999999888 9999999999999999887 79999999999999999999999986545789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~~ 159 (554)
|||++|+..+.+...+++++||++||.||++.++|...|+.++++.+...
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 127 (140)
T 3n53_A 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
T ss_dssp CEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHHHH
Confidence 99999999888888899999999999999999999999999998877654
No 36
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.83 E-value=3.1e-20 Score=163.57 Aligned_cols=124 Identities=20% Similarity=0.341 Sum_probs=113.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHHHh-cCCCceEEEEecCCC-CCcHHHHHHHHHhccCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~-~g~eV~~A~dg~EALe~L~~-~~~~PDLILLDi~MP-~mDGlElLr~Ir~~~~~~ 107 (554)
.+++||||||++..+..|..+|.. .||+|..+.++.+|++.+.. . .|||||+|+.|| +++|++++++|++....+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~--~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLD--SITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCC--CCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCC--CCcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 367999999999999999999999 89999999999999999987 5 899999999999 999999999999833348
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
.+|||++|+..+.+...+++++||++||.||++.++|...|+.++++..
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999998876544
No 37
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.83 E-value=1.4e-19 Score=155.06 Aligned_cols=118 Identities=21% Similarity=0.383 Sum_probs=103.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN--KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 4899999999999999999999999999999999999999876 79999999999999999999999985445689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
++|+..+.....++++.||++||.||++.++|...++.++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 119 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 9999888888889999999999999999999999888765
No 38
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.83 E-value=1.1e-19 Score=157.79 Aligned_cols=122 Identities=22% Similarity=0.351 Sum_probs=105.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+.+.+||||||++..+..|..+|...||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. +.+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 80 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNGLKLLEHIRNRG--DQT 80 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC-----CHHHHHHHHHTT--CCC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcC--CCC
Confidence 4567999999999999999999999999999999999999999766 799999999999999999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~-~~eeL~~~L~~llr~~ 155 (554)
|||++|+..+.....++++.||++||.||+ +.++|...++.++.+.
T Consensus 81 ~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 81 PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp CEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999999 8899999998887543
No 39
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.82 E-value=2.4e-19 Score=157.74 Aligned_cols=127 Identities=22% Similarity=0.389 Sum_probs=114.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcC--------CCceEEEEecCCCCCcHHHHHH
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEG--------SDIDLILAEVDLPMTKGLKMLK 98 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~--------~~PDLILLDi~MP~mDGlElLr 98 (554)
.+++++||||||++..+..|..+|...|+ .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 82 (149)
T 1k66_A 3 GNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQ 82 (149)
T ss_dssp SCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHH
Confidence 45678999999999999999999999998 8999999999999998610 2799999999999999999999
Q ss_pred HHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+|++....+.+|||++|+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 83 ~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp HHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999754336799999999999999999999999999999999999999999987654
No 40
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=2.6e-19 Score=158.17 Aligned_cols=119 Identities=24% Similarity=0.368 Sum_probs=111.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. ..+||
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~l~~~l~~~---~~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGDGWTLCKKIRNV---TTCPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEEHHHHHHHHHTT---CCCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHccC---CCCCE
Confidence 57999999999999999999998899999999999999999876 79999999999999999999999974 37899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|++|+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 79 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 79 VYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp EEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654
No 41
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.82 E-value=2.1e-19 Score=158.49 Aligned_cols=123 Identities=25% Similarity=0.367 Sum_probs=108.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|.+++||||||++..+..|..+|...||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.......+
T Consensus 1 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 78 (138)
T 3c3m_A 1 MSLYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMDGWETLERIKTDPATRDI 78 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred CCcceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCC
Confidence 3467999999999999999999999999999999999999999876 79999999999999999999999976444679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+......++.+|+++||.||++.++|...++.++.+
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 79 PVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp CEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 999999987666566667778899999999999999998887643
No 42
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.82 E-value=1.7e-19 Score=178.83 Aligned_cols=126 Identities=21% Similarity=0.387 Sum_probs=115.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
..++||||||++.++..+...|...|+.|..+.++.+|++.+... ..|||||+|+.||++||++++++|++......+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 367999999999999999999999999999999999999999765 1489999999999999999999999876556799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
||++|+..+.....+++++||+|||.||++.++|...+++++++.+.
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 99999999988999999999999999999999999999998876543
No 43
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.82 E-value=1.2e-19 Score=156.96 Aligned_cols=120 Identities=20% Similarity=0.390 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~-eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+++||||||++..+..+..+|...|| .|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 57899999999999999999998898 788999999999999876 799999999999999999999998754457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
||++|+..+.....++++.||++||.||++.++|...++.+++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887754
No 44
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.82 E-value=4.4e-19 Score=155.39 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-CCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVK-CSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~-~g~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.+++||||||++..+..|..+|.. .||+ |..+.++.+|++.+... .||+||+|+.||+++|++++++|+.....+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 468999999999999999999998 8999 88999999999999876 7999999999999999999999998434578
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+|||++|+..+.....+++++||++||.||++.++|...|+.++++.
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999887643
No 45
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.82 E-value=3.9e-19 Score=155.45 Aligned_cols=124 Identities=19% Similarity=0.370 Sum_probs=111.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+.+||||||++..+..|..+|...||+|..+.++.+|+..+... ..|||||+|+.||+++|+++++.|++.. .+.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~~ 83 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASE-RAALS 83 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTST-TTTCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcC-CCCCC
Confidence 368999999999999999999999999999999999999999876 1399999999999999999999999752 47899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
||++|+..+.+...+++++||++||.||++.++|...|++++....
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999999999999988876543
No 46
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.82 E-value=4.7e-19 Score=153.92 Aligned_cols=125 Identities=23% Similarity=0.353 Sum_probs=113.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhc-----CCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAE-----GSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~-----~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
+.+||||||++..+..|..+|...|+ .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.|++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 56999999999999999999999988 899999999999999761 02799999999999999999999999864
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
..+.+|||++|+..+.+...+++++||++||.||++.++|...++.++++..
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 3367999999999999999999999999999999999999999999876543
No 47
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.82 E-value=3.8e-19 Score=151.46 Aligned_cols=117 Identities=24% Similarity=0.377 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++..+..+..+|...||.|..+.++.+++..+... .||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~---~~~~~ii 76 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQ---WSAVPVI 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESEETTEEHHHHHHHHHT---TCCCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHh---CCCCcEE
Confidence 5899999999999999999998899999999999999998876 7999999999999999999999984 2679999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887654
No 48
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.82 E-value=2.8e-19 Score=158.31 Aligned_cols=124 Identities=19% Similarity=0.324 Sum_probs=113.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.....+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 3578999999999999999999999999999999999999999887 79999999999999999999999974345789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|||++|+..+.....+++++||++||.||++.++|...|+.++++.
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887654
No 49
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.82 E-value=3e-19 Score=159.66 Aligned_cols=121 Identities=21% Similarity=0.429 Sum_probs=111.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g--~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.+++||||||++..+..|..+|...+ +.|..+.++.+|++.+... .|||||+|+.||+++|+++++.|+... +.
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~--~~ 94 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKE--SVDIAILDVEMPVKTGLEVLEWIRSEK--LE 94 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTS--CCSEEEECSSCSSSCHHHHHHHHHHTT--CS
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhcc--CCCEEEEeCCCCCCcHHHHHHHHHHhC--CC
Confidence 57899999999999999999999876 7888999999999999776 799999999999999999999999864 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+|||++|+..+.+...+++++||++||.||++.++|...|++++++.
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998887643
No 50
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.81 E-value=3.3e-19 Score=155.06 Aligned_cols=120 Identities=18% Similarity=0.357 Sum_probs=108.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++||||||++..+..|..+|... ||++. .+.++.+|++.+... .||+||+|+.||+++|++++++|++. ..+.+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~-~~~~~ 78 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLDGLAVLERIRAG-FEHQP 78 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHH-CSSCC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhc-CCCCC
Confidence 468999999999999999999987 88876 899999999999877 79999999999999999999999974 12568
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 79 NVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999887643
No 51
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.81 E-value=6.3e-19 Score=154.91 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=112.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHh-----cCCCceEEEEecCCCCCcHHHHHHHHHhc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNA-----EGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~-----~~~~PDLILLDi~MP~mDGlElLr~Ir~~ 103 (554)
.+++||||||++..+..|..+|...|+ .|..+.++.+|++.+.. . .|||||+|+.||+++|+++++.|++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGR--WPSIICIDINMPGINGWELIDLFKQH 85 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSC--CCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCC--CCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 468999999999999999999999998 88899999999999987 5 79999999999999999999999983
Q ss_pred c--CCCCceEEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 104 K--ELQRIPVIMMSAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 104 ~--~~~~iPIIVLSs~~d~e~~~eAL~aG-A~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
. ..+.+|||++|+..+.....+++..| |++||.||++.++|...|++.+..
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 2 34789999999999999999999999 999999999999999999887643
No 52
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.81 E-value=7.1e-19 Score=157.41 Aligned_cols=124 Identities=15% Similarity=0.298 Sum_probs=113.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCC-ceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSD-IDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~-PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
++++||||||++..+..|..+|.. ||+|..+.++.+|++.+... . +||||+|+.||+++|+++++.|+... +.+
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 77 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS--DPFSVIMVDMRMPGMEGTEVIQKARLIS--PNS 77 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS--CCCSEEEEESCCSSSCHHHHHHHHHHHC--SSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC--CCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCc
Confidence 468999999999999999999976 89999999999999999875 5 49999999999999999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008761 110 PVIMMSAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aG-A~DyL~KP~~~eeL~~~L~~llr~~rl~~ 159 (554)
|||++|+..+.+...+++..| |++||.||++.++|...|..++++.+...
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~~~ 128 (151)
T 3kcn_A 78 VYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDLVT 128 (151)
T ss_dssp EEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999999999988766543
No 53
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.81 E-value=1.3e-19 Score=159.18 Aligned_cols=126 Identities=22% Similarity=0.334 Sum_probs=114.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++....+.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 4578999999999999999999999999999999999999999876 79999999999999999999999984334789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
|||++|+..+.+...+++++||++||.||++.++|...|+.++++.+.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 999999988877788899999999999999999999999999876654
No 54
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.81 E-value=5.6e-20 Score=158.29 Aligned_cols=120 Identities=28% Similarity=0.411 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+++||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSS--CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 46899999999999999999999999999999999999988655 7999999999999999999999997544468999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|++|+..+.+...++++.||++||.||++.++|...++.+++
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp EEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 999999888889999999999999999999999999988764
No 55
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.81 E-value=4.5e-19 Score=154.71 Aligned_cols=119 Identities=28% Similarity=0.444 Sum_probs=110.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+.+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLDGIEVCKQLRQQK--LMFPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHcCC--CCCCE
Confidence 46999999999999999999999999999999999999999877 799999999999999999999999864 67899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++|+..+......+++.||++||.||++.++|...++.++++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 79 LMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp EEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999988877788999999999999999999999999887754
No 56
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.81 E-value=3e-20 Score=163.03 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g-~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
.+.+||||||++..+..|..+|...| |+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. +.+
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 88 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADT--RPGIVILDLGGGDLLGKPGIVEARALW--ATV 88 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTC--CCSEEEEEEETTGGGGSTTHHHHHGGG--TTC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhcc--CCCEEEEeCCCCCchHHHHHHHHHhhC--CCC
Confidence 36799999999999999999999999 9999999999999998765 899999999999999999999999875 589
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+.+...+++++||++||.||++.++|...++.+++.
T Consensus 89 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 89 PLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999998876543
No 57
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.81 E-value=1.3e-19 Score=157.75 Aligned_cols=120 Identities=16% Similarity=0.300 Sum_probs=108.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+++||||||++..+..|..+|...||+|. .+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~--~~~~ 76 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGI 76 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTT--CCSE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCChHHHHHHHHhcC--CCCe
Confidence 36999999999999999999999999988 899999999999887 899999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
||++|+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 77 IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp EEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred EEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999988888999999999999999999999999998887543
No 58
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.81 E-value=2.7e-19 Score=161.75 Aligned_cols=121 Identities=19% Similarity=0.361 Sum_probs=111.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
+++++||||||++..+..|..+|...||+|. .+.++.+|++.+......|||||+|+.||+++|++++++|++.. +.
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~--~~ 111 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD--KN 111 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC--TT
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC--CC
Confidence 3468999999999999999999999999988 99999999999986522489999999999999999999999865 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
+|||++|+..+.+...+++++||++||.||++.++|...|+.++
T Consensus 112 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 112 ARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888764
No 59
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.81 E-value=5.7e-19 Score=154.44 Aligned_cols=122 Identities=25% Similarity=0.409 Sum_probs=111.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHHHhcc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDK 104 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~Ir~~~ 104 (554)
|++++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.|| +++|+++++.|+...
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 1 MSLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 4578999999999999999999999999999999999999999876 799999999999 999999999999864
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+.+|||++|+..+.+...+++++||++||.||++.++|...|+.++++.
T Consensus 79 --~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 79 --RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp --TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred --cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999889999999999999999999999999998877543
No 60
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.81 E-value=1.1e-19 Score=190.35 Aligned_cols=118 Identities=19% Similarity=0.409 Sum_probs=112.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIV 113 (554)
+||||||++.++..|..+|+..||+|..+.++.+|++.+... .|||||+|+.||+|||++++++|++.. +.+|||+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllDi~mP~~dG~ell~~lr~~~--~~~pvI~ 77 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDGVNFIDFIKENS--PDSVVIV 77 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHB--CCSEEEEESEETTEETTTHHHHHHHHC--TTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeEEE
Confidence 799999999999999999999999999999999999999887 899999999999999999999999865 7899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 114 LSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+|++.+.+.+.+|+++||+|||.||++.++|...|++++...
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887654
No 61
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.81 E-value=1.1e-18 Score=156.32 Aligned_cols=125 Identities=14% Similarity=0.345 Sum_probs=115.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+.+++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 80 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMGGEVFLEQVAKSY--PDI 80 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSCHHHHHHHHHHHC--TTS
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhC--CCC
Confidence 4578999999999999999999999999999999999999999876 799999999999999999999999864 689
Q ss_pred eEEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008761 110 PVIMMSAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aG-A~DyL~KP~~~eeL~~~L~~llr~~rl~ 158 (554)
|||++|+..+.....++++.| |++||.||++.++|...|+.+++..+..
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~~ 130 (154)
T 2rjn_A 81 ERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFLR 130 (154)
T ss_dssp EEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999988999999998 9999999999999999999998776543
No 62
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.81 E-value=1e-18 Score=151.70 Aligned_cols=121 Identities=21% Similarity=0.350 Sum_probs=105.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+.+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++......++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 357999999999999999999999999999999999999999876 899999999999999999999999864334566
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
||+++..... ...+++++||++||.||++.++|...|++....
T Consensus 83 ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 83 ILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 6666665555 788999999999999999999999999887654
No 63
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.80 E-value=5.7e-19 Score=168.44 Aligned_cols=126 Identities=20% Similarity=0.308 Sum_probs=108.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHHHhc-----------CCCceEEEEecCCCCCcHHHHH
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAE-----------GSDIDLILAEVDLPMTKGLKML 97 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~-eV~~A~dg~EALe~L~~~-----------~~~PDLILLDi~MP~mDGlElL 97 (554)
+...+||||||++.++..|..+|...|| .|..+.++.+|++.+... ...|||||+|+.||+++|++++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~ 138 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEAT 138 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHH
Confidence 4568999999999999999999999998 899999999999999763 1269999999999999999999
Q ss_pred HHHHhccC--CCCceEEEEecCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 98 KYITRDKE--LQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 98 r~Ir~~~~--~~~iPIIVLSs~~-d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
++|++... .+.+|||++|+.. +.+...+++++||++||.||++ +|...|+.++++.+.
T Consensus 139 ~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 139 REIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp HHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred HHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 99997521 2679999999987 7788899999999999999999 888888888766543
No 64
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.80 E-value=3.4e-19 Score=167.65 Aligned_cols=122 Identities=17% Similarity=0.415 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+.+||||||++.++..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ 78 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPE--QHGCLVLDMRMPGMSGIELQEQLTAIS--DGIP 78 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTT--SCEEEEEESCCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 467999999999999999999999999999999999999998765 799999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
||++|+..+.+...++++.||++||.||++.++|...++.+++...
T Consensus 79 ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 124 (208)
T 1yio_A 79 IVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124 (208)
T ss_dssp EEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 9999999888888999999999999999999999999998887644
No 65
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.80 E-value=4.4e-19 Score=174.23 Aligned_cols=121 Identities=28% Similarity=0.458 Sum_probs=111.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.|.+++||||||++.++..|..+|...||.|..+.++.+|++.+... .|||||+|+.||+++|++++++|+.. +.
T Consensus 34 ~m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~G~~l~~~lr~~---~~ 108 (249)
T 3q9s_A 34 RMNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFDGGDVVQRLRKN---SA 108 (249)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHHHHHHHHHHHTT---CC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHcC---CC
Confidence 45678999999999999999999999999999999999999999876 79999999999999999999999973 67
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+|||++|+..+.+...+++++||++||.||++.++|...|+.++++
T Consensus 109 ~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 109 LPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp CCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887653
No 66
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.80 E-value=1.4e-18 Score=151.94 Aligned_cols=123 Identities=14% Similarity=0.267 Sum_probs=114.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mDGlElLr~Ir~~~~~~~ 108 (554)
.+++||||||++..+..|..+|...||+|. .+.++.+|++.+... .||+||+|+.|| +++|+++++.|+.. +.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~g~~~~~~l~~~---~~ 82 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALDGVETAARLAAG---CN 82 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSCHHHHHHHHHHH---SC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCCHHHHHHHHHhC---CC
Confidence 468999999999999999999998899999 699999999999887 799999999999 79999999999985 67
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRML 158 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl~ 158 (554)
+|||++|+..+.....++++.||++||.||++.++|...|+.++++....
T Consensus 83 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 83 LPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp CCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999988766543
No 67
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.80 E-value=7.6e-19 Score=154.67 Aligned_cols=121 Identities=21% Similarity=0.353 Sum_probs=111.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+ ||+++|+++++.|+... +.+|
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~--~~~p 77 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEF--PDTK 77 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHC--TTCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHC--CCCC
Confidence 367999999999999999999999999999999999999999876 899999999 99999999999999764 6799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
||++|+..+.+...++++.||++||.||++.++|...++.++++.+
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 78 VAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999998876543
No 68
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.80 E-value=7.8e-19 Score=157.14 Aligned_cols=124 Identities=17% Similarity=0.309 Sum_probs=112.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~-~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
|.+.+++||||||++..+..|..+|.. .||.|. .+.++.+|++.+... .||+||+|+.||+++|++++++|+...
T Consensus 1 m~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~- 77 (153)
T 3cz5_A 1 MSLSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPGGIEATRHIRQWD- 77 (153)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSCHHHHHHHHHHHC-
T ss_pred CCCcccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhC-
Confidence 346678999999999999999999998 799988 899999999999876 799999999999999999999999864
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 106 ~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+.+|||++|+..+.+...+++++||++||.||++.++|...|+.++++.
T Consensus 78 -~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 78 -GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp -TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred -CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 6799999999999999999999999999999999999999998876543
No 69
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.80 E-value=2.8e-19 Score=158.49 Aligned_cols=120 Identities=16% Similarity=0.251 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHHHh--cCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNA--EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g-~eV~~A~dg~EALe~L~~--~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
.+.+||||||++..+..|..+|...| |+|..+.++.+++..+.. . .|||||+|+.||+++|++++++|+... +
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~--~ 94 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLD--AFDILMIDGAALDTAELAAIEKLSRLH--P 94 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHT--TCSEEEEECTTCCHHHHHHHHHHHHHC--T
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCC--CCCEEEEeCCCCCccHHHHHHHHHHhC--C
Confidence 47899999999999999999999888 999999999988887754 4 799999999999999999999999864 7
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
.+|||++|+..+.+...+++++||++||.||++.++|...|+.++++
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999888754
No 70
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.80 E-value=8.8e-20 Score=184.53 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=108.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mDGlElLr~Ir~~~~~~~i 109 (554)
..+||||||++.++..+..+|+..||+|. .|.||.+|++.+... .|||||+|+.|| +|||+++++.|++.. .+
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e~~~~ir~~~---~~ 234 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGIDAVKDILGRM---DV 234 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTTTTHHHHHHT---TC
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHHHHHHHHhcC---CC
Confidence 46899999999999999999999999999 999999999999887 899999999999 899999999999863 89
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|||++|+..+ ...+|+++||++||.||++.++|...|..++...
T Consensus 235 piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 235 PVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp CEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 9999999853 4677999999999999999999999999987653
No 71
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.80 E-value=8.9e-19 Score=149.70 Aligned_cols=121 Identities=18% Similarity=0.358 Sum_probs=109.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCC-CCcHHHHHHHHHhccCCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mDGlElLr~Ir~~~~~~~ 108 (554)
|++++||||||++..+..|...|...||+|..+.++.+|++.+... .||+||+|+.|| +++|+++++.|++....+.
T Consensus 3 mm~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 3 HMSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQNGYLICGKLKKDDDLKN 80 (127)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCBHHHHHHHHHHSTTTTT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCCHHHHHHHHhcCccccC
Confidence 4457999999999999999999999999999999999999999887 799999999999 9999999999998644578
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
+|||++ +..+.....++++.||++||.||++.++|...++.+++
T Consensus 81 ~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 81 VPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp SCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 999999 88888888999999999999999999999998887653
No 72
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.79 E-value=4.2e-19 Score=185.00 Aligned_cols=123 Identities=26% Similarity=0.467 Sum_probs=108.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.+++++||||||++.++..|..+|+..||+|..+.++.+|++.+... .|||||+|+.||+|||++++++|++.. +.
T Consensus 2 ~~~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~--~~ 77 (394)
T 3eq2_A 2 HKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRMPQIDGLELIRRIRQTA--SE 77 (394)
T ss_dssp --CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS--CCSEEEECCCSSSSCTHHHHHHHHHTT--CC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHHhhC--CC
Confidence 34568999999999999999999999999999999999999999876 799999999999999999999999864 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRRR 155 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~-~~eeL~~~L~~llr~~ 155 (554)
+|||++|+..+.+...++++.||+|||.||+ ..++|...+.+++++.
T Consensus 78 ~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 78 TPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp CCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999 5788888887776543
No 73
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.79 E-value=9.8e-19 Score=166.17 Aligned_cols=120 Identities=28% Similarity=0.463 Sum_probs=112.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~lr~~~--~~~~i 77 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNE--PFDVVILDIMLPVHDGWEILKSMRESG--VNTPV 77 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 57999999999999999999999999999999999999999876 799999999999999999999999864 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|++|+..+.+...+++++||++||.||++.++|...++.++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 78 LMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp EEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999889999999999999999999999999999887654
No 74
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.79 E-value=1.8e-18 Score=163.81 Aligned_cols=120 Identities=24% Similarity=0.338 Sum_probs=110.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~-g~eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.+++||||||++.++..|..+|... ++.| ..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~ 79 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKS--LS 79 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSCHHHHHHHHHHSC--CC
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHHhC--CC
Confidence 3679999999999999999999986 4887 6899999999999877 799999999999999999999999864 67
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+|||++|+..+.+...+++++||++||.||++.++|...++.++++
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 80 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp SEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred CcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999888754
No 75
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.5e-18 Score=155.14 Aligned_cols=123 Identities=21% Similarity=0.308 Sum_probs=111.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSY-Q-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~-e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.+.+||||||++..+..|..+|...|+ . |..+.++.+|++.+... .|||||+|+.||+++|+++++.|++.. +.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~--~~ 89 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMDGAQVAAAVRSYE--LP 89 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTT--CS
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CC
Confidence 468999999999999999999998884 3 45899999999999887 799999999999999999999999864 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
+|||++|+..+.....+++++||++||.||++.++|...|..++++...
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 9999999999999999999999999999999999999999988775543
No 76
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.79 E-value=5e-19 Score=157.25 Aligned_cols=121 Identities=17% Similarity=0.318 Sum_probs=103.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh--CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVK--CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~--~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
+++||||||++..+..|..+|.. .||.+. .+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~--~~ 77 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH--PPNVLLTDVRMPRMDGIELVDNILKLY--PD 77 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHC--TT
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CC
Confidence 46999999999999999999973 578777 999999999998765 799999999999999999999999754 68
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
+|||++|+..+.+...++++.||++||.||++.++|...|+.+++...
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 78 CSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp CEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999998887788899999999999999999999999998876543
No 77
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.79 E-value=1.2e-18 Score=171.87 Aligned_cols=123 Identities=22% Similarity=0.361 Sum_probs=114.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
...++||||||++..+..+..+|+..||+|..+.++.+|++.+... .||+||+|+.||+|+|++++++|++.. +.+
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~dlvl~D~~mp~~~G~~l~~~ir~~~--~~~ 202 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLSDVNMPNMDGYRLTQRIRQLG--LTL 202 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHS--CCSEEEEEESSCSSCCHHHHHHHHHHH--CCS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcC--CCC
Confidence 3468999999999999999999999999999999999999999876 799999999999999999999999865 679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
|||++|+..+.+...+++++|+++||.||++.++|...+.+++++.+
T Consensus 203 piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 203 PVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp CEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 99999999998999999999999999999999999999998887654
No 78
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.79 E-value=5.7e-19 Score=149.97 Aligned_cols=114 Identities=19% Similarity=0.376 Sum_probs=103.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..+...|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii 77 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGISGLEVAGEIRKKK--KDAKII 77 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHHC--TTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHccC--CCCeEE
Confidence 4899999999999999999999999999999999999999876 799999999999999999999999864 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
++|+..+.. .++++.||++||.||++.++|...+++++
T Consensus 78 ~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 78 LLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 999876654 67889999999999999999998887653
No 79
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.79 E-value=1.2e-18 Score=164.16 Aligned_cols=121 Identities=19% Similarity=0.368 Sum_probs=111.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+.+||||||++..+..|..+|...||+|. .+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. .+.|
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~g~~~~~~l~~~---~~~p 87 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRDGIDAASEIASK---RIAP 87 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHT---TCSC
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCChHHHHHHHHhc---CCCC
Confidence 46999999999999999999999999988 999999999999887 79999999999999999999999975 3459
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
||++|+..+.+...++++.||++||.||++.++|...|+.++++.+.
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 134 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFRE 134 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988876543
No 80
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.79 E-value=1.9e-18 Score=151.31 Aligned_cols=120 Identities=20% Similarity=0.355 Sum_probs=104.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC---C
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL---Q 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~---~ 107 (554)
..++||||||++..+..+..+|...||+|..+.++.+|++.+... +|+||+|+.||+++|+++++.|++.... .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999999999999999999999988543 4999999999999999999999853211 1
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
..+||++|+..+.....++++.||++||.||++.++|...++.+++
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 2358889999998889999999999999999999999998887653
No 81
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.79 E-value=4.4e-18 Score=149.89 Aligned_cols=120 Identities=19% Similarity=0.302 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..+..+|... |+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ii 76 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRTGVDFLTEVRERW--PETVRI 76 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSCHHHHHHHHHHHC--TTSEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCcEE
Confidence 47999999999999999999875 9999999999999999876 799999999999999999999999764 678999
Q ss_pred EEecCCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRL-GAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~a-GA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
++|+..+.....+++.. ||++||.||++.++|...++.+++....
T Consensus 77 ~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 122 (139)
T 2jk1_A 77 IITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFTL 122 (139)
T ss_dssp EEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999888888899886 5999999999999999999988775543
No 82
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.79 E-value=1.5e-18 Score=182.58 Aligned_cols=121 Identities=21% Similarity=0.390 Sum_probs=113.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++.++..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|+... +.+|||
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~ell~~lr~~~--~~~pvI 76 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVNGLEILKWIKERS--PETEVI 76 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEE
Confidence 4799999999999999999998899999999999999999876 799999999999999999999999864 789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
++|++.+.+.+.+|++.||+|||.||++.++|...++++++..++
T Consensus 77 vlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l 121 (387)
T 1ny5_A 77 VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKL 121 (387)
T ss_dssp EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876543
No 83
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.78 E-value=2.7e-18 Score=153.93 Aligned_cols=122 Identities=20% Similarity=0.443 Sum_probs=113.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~--~~~pi 78 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGLALFRKILALD--PDLPM 78 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHC--TTSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCE
Confidence 57999999999999999999999999999999999999998765 799999999999999999999999864 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
|++|+..+.....++++.||++||.||++.++|...++.++++.+.
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 79 ILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp EEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999988999999999999999999999999999998877654
No 84
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.78 E-value=2.5e-18 Score=151.17 Aligned_cols=120 Identities=25% Similarity=0.356 Sum_probs=107.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhc----CCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAE----GSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~----~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
.+++||||||++..+..|..+|...|+ .|..+.++.+|++.+... ...|||||+|+.||+++|+++++.|++..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 457999999999999999999998887 899999999999999861 02799999999999999999999999764
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
..+.+|||++|+..+.+...+++++||++||.||++.++|...+..
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999887554
No 85
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.78 E-value=3e-18 Score=181.36 Aligned_cols=123 Identities=23% Similarity=0.341 Sum_probs=114.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++.++..|..+|...||.|..+.++.+|++.+... .|||||+|+.||+|+|+++++.|+.....+.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 4899999999999999999999999999999999999999877 79999999999999999999999985445689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
++|+..+.+...+++++||+|||.||++.++|...++.+++....
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 124 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLV 124 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998876544
No 86
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.78 E-value=1.2e-18 Score=166.37 Aligned_cols=122 Identities=25% Similarity=0.420 Sum_probs=112.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
..++||||||++.++..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. +.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~--~~~~ 81 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLDGVSVVTALRAMD--NDVP 81 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 467999999999999999999999999999999999999999876 799999999999999999999999764 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
||++|+..+.+...+++++||++||.||++.++|...++.++++..
T Consensus 82 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999888888899999999999999999999999999887643
No 87
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.77 E-value=1.6e-18 Score=155.01 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=99.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CC-EEEEECCHHHHHHHHHh-cCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SY-QVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~-g~-eV~~A~dg~EALe~L~~-~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
|++++||||||++..+..|..+|... |+ .|..+.++.+|++.+.. . .|||||+|+.||+++|+++++.|+...
T Consensus 1 M~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~-- 76 (154)
T 2qsj_A 1 MSLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADN--TVDLILLDVNLPDAEAIDGLVRLKRFD-- 76 (154)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTC--CCSEEEECC------CHHHHHHHHHHC--
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccC--CCCEEEEeCCCCCCchHHHHHHHHHhC--
Confidence 45789999999999999999999987 88 67899999999999987 5 799999999999999999999999864
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+.+|||++|+..+.+...++++.||++||.||++.++|...|+.++++.
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 77 PSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 6899999999988889999999999999999999999999998876543
No 88
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.77 E-value=5.9e-18 Score=154.56 Aligned_cols=112 Identities=21% Similarity=0.376 Sum_probs=95.5
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCC-CE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCS-YQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g-~e-V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
|.+.+++||||||++..+..|..+|...+ +. |..+.++.+|++.+... .|||||+|+.||+++|++++++|+...
T Consensus 21 M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~l~~~lr~~~- 97 (164)
T 3t8y_A 21 MTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLNGIEALKLIMKKA- 97 (164)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHHS-
T ss_pred cccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCCHHHHHHHHHhcC-
Confidence 44557899999999999999999999874 44 44899999999999887 799999999999999999999999864
Q ss_pred CCCceEEEEecCCCH--HHHHHHHHcCCCEEEeCCCCHHHH
Q 008761 106 LQRIPVIMMSAQDEV--SVVVKCLRLGAADYLVKPLRTNEL 144 (554)
Q Consensus 106 ~~~iPIIVLSs~~d~--e~~~eAL~aGA~DyL~KP~~~eeL 144 (554)
++|||++|+..+. ....+++++||++||.||++.++|
T Consensus 98 --~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 136 (164)
T 3t8y_A 98 --PTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISL 136 (164)
T ss_dssp --CCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred --CceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHH
Confidence 3899999987664 367799999999999999994333
No 89
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.77 E-value=1.1e-17 Score=147.32 Aligned_cols=121 Identities=17% Similarity=0.366 Sum_probs=106.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.+++||||||++..+..|..+|... ++.++ .+.++.+|++.+... .|||||+|+.||+++|+++++.|+... +.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~ 83 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLDGVLLAQNISQFA--HK 83 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSCHHHHHHHHTTST--TC
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHccC--CC
Confidence 4689999999999999999999875 78854 899999999999876 799999999999999999999999753 56
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
+|||++|+..+ ...++++.||++||.||++.++|...|+.+++..+.
T Consensus 84 ~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 84 PFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp CEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 78999998744 567899999999999999999999999998876553
No 90
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.77 E-value=2.3e-18 Score=166.46 Aligned_cols=119 Identities=25% Similarity=0.449 Sum_probs=109.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++++||||||++.++..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|+++++.|+.. ..+
T Consensus 3 ~m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~~~~~lr~~---~~~ 77 (238)
T 2gwr_A 3 TMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRVLRAD---SGV 77 (238)
T ss_dssp CCCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHTT---CCC
T ss_pred cccCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhC---CCC
Confidence 3467999999999999999999999999999999999999999877 79999999999999999999999975 479
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|||++|+..+.....+++++||++||.||++.++|...|+.+++
T Consensus 78 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 78 PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp CEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99999999888888999999999999999999999998887654
No 91
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.76 E-value=1.8e-18 Score=150.00 Aligned_cols=119 Identities=18% Similarity=0.309 Sum_probs=106.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|++++||||||++..+..|..+|...++.|..+.+++++++.+.. .||+||+|+.||+++|+++++.|++.. +.+
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~---~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 75 (135)
T 3eqz_A 1 MSLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN---KQDIIILDLMMPDMDGIEVIRHLAEHK--SPA 75 (135)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC---TTEEEEEECCTTTTHHHHHHHHHHHTT--CCC
T ss_pred CCcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc---CCCEEEEeCCCCCCCHHHHHHHHHhCC--CCC
Confidence 457899999999999999999999888899999999999988743 399999999999999999999999864 789
Q ss_pred eEEEEecCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEV-----SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 110 PIIVLSs~~d~-----e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
|||++|+..+. +...+++++||++||.||++.++|...|++++.
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 76 SLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred CEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 99999998874 667789999999999999999999999887754
No 92
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.76 E-value=1.2e-17 Score=144.66 Aligned_cols=122 Identities=18% Similarity=0.282 Sum_probs=108.4
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CcHHHHHHHHHhccCC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKEL 106 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~-mDGlElLr~Ir~~~~~ 106 (554)
|.|.+++||||||++..+..|..+|...||+|..+.++.+|++.+... ..||+||+|+.||+ ++|++++++|+...
T Consensus 1 m~m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~-- 77 (132)
T 2rdm_A 1 MSLEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREID-- 77 (132)
T ss_dssp -CCSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHC--
T ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcC--
Confidence 456788999999999999999999999999999999999999999753 16999999999997 99999999999864
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+.+|||++|+..+.....+++..| +||.||++.++|...|++++..
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 78 PNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp TTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 689999999988877777777776 8999999999999999887653
No 93
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.76 E-value=4e-18 Score=162.76 Aligned_cols=118 Identities=27% Similarity=0.441 Sum_probs=110.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+++||||||++.++..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~---~~~~i 78 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA--GADIVLLDLMLPGMSGTDVCKQLRAR---SSVPV 78 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHH---CSCSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEECCCCCCCHHHHHHHHHcC---CCCCE
Confidence 57999999999999999999999999999999999999999877 79999999999999999999999984 57999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++|+..+.....+++++||++||.||++.++|...++.++++
T Consensus 79 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 79 IMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 9999998888899999999999999999999999999887654
No 94
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.75 E-value=7.8e-18 Score=171.71 Aligned_cols=120 Identities=27% Similarity=0.364 Sum_probs=109.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~-~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+.+||||||++.++..|..+|.. .||+|..+.++.+|++.+... .|||||+|+.||+|+|+++++.|+.....+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI--KPTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 46899999999999999999964 589999999999999999877 799999999999999999999999754456899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
||++|+..+.....+|+++||+|||.||++.++|...+..+++
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877643
No 95
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.75 E-value=1.2e-17 Score=158.80 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=108.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+++||||||++.++..|..+|...| .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.|+... +.+||
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~i 74 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETR--PETWV 74 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcE
Confidence 5799999999999999999999888 888999999999987 3 799999999999999999999999864 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|++|+..+.+...+++++||++||.||++.++|...++.++++
T Consensus 75 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 75 ILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999988765
No 96
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.74 E-value=3.5e-18 Score=164.41 Aligned_cols=121 Identities=17% Similarity=0.290 Sum_probs=111.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCS-YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g-~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++||||||++.++..|..+|...| |.++ .+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~ 76 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGNGIELCRDLLSRM--PDL 76 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEEHHHHHHHHHHHC--TTC
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHHhC--CCC
Confidence 3699999999999999999999886 8855 899999999999877 799999999999999999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
|||++|+..+.+...++++.||++||.||++.++|...++.++++..
T Consensus 77 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 77 RCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp EEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999887643
No 97
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.74 E-value=5.6e-17 Score=142.11 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=107.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC-
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ- 107 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~- 107 (554)
...+.+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+|| ||+++|+++++.|+.. +
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~~~~~g~~~~~~l~~~---~~ 85 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEK---HS 85 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----ECSTTHHHHHHHHHHH---ST
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----EcCccHHHHHHHHHhc---CC
Confidence 34578999999999999999999999999999999999999999876 799999 8999999999999975 5
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRR 154 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~-~~eeL~~~L~~llr~ 154 (554)
.+|||++|+..+.+...++++.||++||.||+ +.++|...|+.++++
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999 999999998887654
No 98
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.73 E-value=1.3e-17 Score=146.92 Aligned_cols=120 Identities=19% Similarity=0.336 Sum_probs=102.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc---CCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK---ELQR 108 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~---~~~~ 108 (554)
.++||||||++..+..+..+|...|+.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. ..+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS--CCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 46999999999999999999998899999999999999999876 799999999999999999999998631 1357
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
+|||++|+........ ++||++||.||++.++|...|+.++....
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 8999999865433222 78999999999999999999988875543
No 99
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.73 E-value=8.9e-18 Score=176.40 Aligned_cols=122 Identities=17% Similarity=0.295 Sum_probs=107.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~-~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
|++++||||||++.++..+..+|.. .+++|..+.++.+|++.+... ..|||||+|+.||+|||++++++|+... +.
T Consensus 1 M~~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~--~~ 77 (400)
T 3sy8_A 1 MNDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSG--KV 77 (400)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHT--CE
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CC
Confidence 4568999999999999999999987 578999999999999999872 1799999999999999999999999864 55
Q ss_pred ceEEEEecCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEV-----SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 109 iPIIVLSs~~d~-----e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
++||++|+..+. ..+.+|+++||.+||.||++.++|...+.+++..
T Consensus 78 ~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~ 128 (400)
T 3sy8_A 78 HSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNAR 128 (400)
T ss_dssp EEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred ceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHh
Confidence 677777777665 5678899999999999999999999999887654
No 100
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.73 E-value=2e-17 Score=138.72 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=104.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.+||||||++..+..+...|...||+|..+.++.++++.+... .||+||+|+.||+++|+++++.|++....+.+|||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 4899999999999999999999999999999999999999887 79999999999999999999999986544789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~l 151 (554)
++|...+.. ++++.|+++||.||++.++|...++.+
T Consensus 80 ~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 80 LFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp EEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred EEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 999877655 899999999999999999998887654
No 101
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.73 E-value=1.8e-17 Score=146.95 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=96.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
...+||||||++..+..|..+|+.. ||.++ .+.++.+|++.+.... .|||||+|+.||+++|++++++|+... .
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~---~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKT---R 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHC---C
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcC---C
Confidence 4679999999999999999999988 88865 8999999999997641 599999999999999999999999863 4
Q ss_pred ceEEEEec--CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 109 IPVIMMSA--QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 109 iPIIVLSs--~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
+|||+++. ..+.+...+++++||++||.||++.++|...++.
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~ 131 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEKT 131 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------CT
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHH
Confidence 89999997 5566678899999999999999997776655443
No 102
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.73 E-value=2.2e-19 Score=153.16 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=109.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
|.+.+||||||++..+..+..+|...||+|..+.++.++++.+... .||+||+|+.||+++|+++++.|+... +.+
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~ 76 (124)
T 1dc7_A 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGLALLKQIKQRH--PML 76 (124)
T ss_dssp CCCCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHCSTHHHHHHHC--TTS
T ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHHHHHHHHHhhC--CCC
Confidence 4567899999999999999999998899999999999999998755 799999999999999999999998754 679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|||++|+..+.+...++++.||++||.||++.++|...++.++++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 77 PVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp CCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 999999988877888999999999999999999999999887653
No 103
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.73 E-value=4.3e-18 Score=163.21 Aligned_cols=120 Identities=7% Similarity=0.030 Sum_probs=104.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHH-HHhcCCCceEEEEecCCCCCcHHHHHHHHHh-ccCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVRSPRQVIDA-LNAEGSDIDLILAEVDLPMTKGLKMLKYITR-DKEL 106 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~-~g~eV~-~A~dg~EALe~-L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~-~~~~ 106 (554)
.+++||||||++.++..|..+|+. .||+|. .+.++.+++.. +... .|||||+|+.||+++|++++++|++ ..
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~-- 81 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESR--SIQMLVIDYSRISDDVLTDYSSFKHISC-- 81 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGG--GCCEEEEEGGGCCHHHHHHHHHHHHHHC--
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhcc--CCCEEEEeCCCCCCCHHHHHHHHHHhhC--
Confidence 468999999999999999999984 688886 45566666653 5554 7999999999999999999999997 43
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
+.+|||++|+..+......++++||++||.||++.++|...++.++++
T Consensus 82 ~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 82 PDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp TTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 789999999998888889999999999999999999999999988764
No 104
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.70 E-value=3.8e-17 Score=152.81 Aligned_cols=116 Identities=13% Similarity=0.268 Sum_probs=103.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
..++||||||++..+..|..+|...||.|..+.++.+|+ .. .|||||+|+.||+++|+ +++.++... +.+|
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~~--~~dlvl~D~~mp~~~g~-l~~~~~~~~--~~~~ 81 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DV--PVDVVFTSIFQNRHHDE-IAALLAAGT--PRTT 81 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SS--CCSEEEEECCSSTHHHH-HHHHHHHSC--TTCE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----CC--CCCEEEEeCCCCccchH-HHHHHhccC--CCCC
Confidence 467999999999999999999998899999888877766 23 79999999999999999 888888653 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
||++|+..+.+...++++.||++||.||++.++|...+..++...
T Consensus 82 ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 82 LVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877654
No 105
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.69 E-value=4.3e-17 Score=143.04 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=101.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHh-cCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~-~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
+...+||||||++..+..|..+|...||+|..+.++.+|++.+.. . .||+||+|+.||+++|+++++.|+.. .+.
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~~dlvilD~~l~~~~g~~~~~~l~~~--~~~ 88 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS--TCDLLIVSDQLVDLSIFSLLDIVKEQ--TKQ 88 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG--SCSEEEEETTCTTSCHHHHHHHHTTS--SSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC--CCCEEEEeCCCCCCCHHHHHHHHHhh--CCC
Confidence 457899999999999999999999999999999999999999987 6 79999999999999999999999974 378
Q ss_pred ceEEEEe-cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 109 IPVIMMS-AQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 109 iPIIVLS-s~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
+|||++| +..+... .+++ |++||.||++.++|...++.+++
T Consensus 89 ~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 89 PSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 9999999 8766555 5666 99999999999999998877654
No 106
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.67 E-value=3.5e-16 Score=148.89 Aligned_cols=114 Identities=19% Similarity=0.246 Sum_probs=105.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++||||||++.++..|..+|...||+|..+.++.+|++.+... .||+|| ||+++|+++++.|++. ...+|||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----lp~~~g~~~~~~lr~~--~~~~~ii 72 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEK--HSSIVVL 72 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----ECCTTHHHHHHHHHHH--CTTSEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----eCCCCHHHHHHHHHhC--CCCCcEE
Confidence 4799999999999999999999999999999999999999765 799999 9999999999999985 2379999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRR 154 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~KP~-~~eeL~~~L~~llr~ 154 (554)
++|+..+.+...+++++||++||.||+ +.++|...++.++++
T Consensus 73 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 73 VSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999 999999998887643
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.63 E-value=4.3e-16 Score=154.37 Aligned_cols=103 Identities=16% Similarity=0.272 Sum_probs=87.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+.+||||||++.++..|...|... |+.|.. .++.+++..+... .||+||+|+.||++||++++++|++. .+|
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~-~~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~~----~~p 76 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDA-FDTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLER----GLP 76 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ESSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHHT----TCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEE-eChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHhC----CCC
Confidence 468999999999999999999764 777754 4555666655443 79999999999999999999999863 589
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRT 141 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~ 141 (554)
||++|+..+.+...+|+++||+|||.||...
T Consensus 77 vi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 77 VVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999999643
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.60 E-value=1.4e-15 Score=173.11 Aligned_cols=119 Identities=11% Similarity=0.172 Sum_probs=109.5
Q ss_pred EEEEEeCCH-HH-------HHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC----CcHHHHHHHHH
Q 008761 34 RILLCDNDS-NS-------SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM----TKGLKMLKYIT 101 (554)
Q Consensus 34 rVLIVDDd~-~~-------r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~----mDGlElLr~Ir 101 (554)
+||||||+. .+ ++.|...|+..||+|..+.++++|+..+... ..||+||+|+.||+ ++|+++|++|+
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~iR 80 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHHH
Confidence 899999999 88 9999999999999999999999999999764 24999999999999 99999999999
Q ss_pred hccCCCCceEEEEecCCC-HHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDE-VSVVVKCLRLGAADYLVKPLRTNE-LLNLWTHMWRRR 155 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d-~e~~~eAL~aGA~DyL~KP~~~ee-L~~~L~~llr~~ 155 (554)
+.. ..+||||+|+..+ .+....++..||+|||.||++..+ |..+|+.++++.
T Consensus 81 ~~~--~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 81 ERQ--QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHS--TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HhC--CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 875 5799999999877 777888999999999999999999 889999998775
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.10 E-value=2.8e-09 Score=112.56 Aligned_cols=123 Identities=20% Similarity=0.329 Sum_probs=105.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...+||+|||+...+..+...|.. .+.+....++.+++. +... .||+|++|+.||+|+|+++++.|+.......+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 456999999999988888888865 366778888888863 3333 699999999999999999999999876667899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~rl 157 (554)
||++|+..+......+++.|++||+.||+...++...+..+++..+.
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~~ 273 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRY 273 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998899999999999999999999998888877765544
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.03 E-value=1.7e-10 Score=109.63 Aligned_cols=92 Identities=17% Similarity=0.396 Sum_probs=75.4
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 57 YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 57 ~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +..+|++++.....+...++++.||++||.
T Consensus 6 ~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~ 81 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIV 81 (237)
T ss_dssp EEEECCCSSSTTHHHHHHH--CCSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHHCCHHheEe
Confidence 4556788999999999887 799999999999999999999999765 344556666555678899999999999999
Q ss_pred CC--CCHHHHHHHHHHHH
Q 008761 137 KP--LRTNELLNLWTHMW 152 (554)
Q Consensus 137 KP--~~~eeL~~~L~~ll 152 (554)
|| +...+|...+.+.+
T Consensus 82 kp~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 82 NTAAVENPSLITQIAQTF 99 (237)
T ss_dssp SHHHHHCTHHHHHHHHHH
T ss_pred CCcccChHHHHHHHHHHh
Confidence 99 66667776665544
No 111
>3sft_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; modified doubly-wound/fold, chemoreceptor; 2.15A {Thermotoga maritima}
Probab=97.61 E-value=1.9e-05 Score=76.19 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=29.5
Q ss_pred ccEEEEEccCcchhcccccccccCCCCCc-ccccc
Q 008761 217 VATATVVASTSGTAAVEPIDASECGPDVP-GISDR 250 (554)
Q Consensus 217 ~~iVaIGASTGGp~AL~~I~L~~lPaD~P-pil~~ 250 (554)
.++|+||||||||+||+.+ |..||+||| |++.-
T Consensus 7 ~~vV~IGaStGG~~AL~~~-l~~LP~~~~~~iviv 40 (193)
T 3sft_A 7 GKIVVIGSSTGGPRSLDMI-IPNLPKNFPAPIVVV 40 (193)
T ss_dssp SCEEEEEECTTHHHHHTTT-GGGSCTTCSSCEEEE
T ss_pred CCEEEEEeCCCCHHHHHHH-HHhCCCCCCCeEEEE
Confidence 4799999999999999999 999999999 65443
No 112
>1chd_A CHEB methylesterase; chemotaxis protein, serine hydrolase, carboxyl methylesteras; 1.75A {Salmonella typhimurium} SCOP: c.40.1.1
Probab=97.42 E-value=3.5e-05 Score=74.87 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=28.6
Q ss_pred ccEEEEEccCcchhcccccccccCCCCCccccc
Q 008761 217 VATATVVASTSGTAAVEPIDASECGPDVPGISD 249 (554)
Q Consensus 217 ~~iVaIGASTGGp~AL~~I~L~~lPaD~Ppil~ 249 (554)
.++|+||||||||+||+.+ |..||+|||+|+.
T Consensus 10 ~~vV~IGaStGG~~AL~~~-l~~LP~~~~~ivi 41 (203)
T 1chd_A 10 EKLIAIGASTGGTEAIRHV-LQPLPLSSPAVII 41 (203)
T ss_dssp CCEEEEEECTTHHHHHHHH-HTTCCTTSCEEEE
T ss_pred CCEEEEEeCCCCHHHHHHH-HHhCCCCCCeEEE
Confidence 4799999999999999999 9999999986443
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.04 E-value=0.00078 Score=76.45 Aligned_cols=104 Identities=9% Similarity=0.123 Sum_probs=79.2
Q ss_pred HHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHH-
Q 008761 45 SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV- 123 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~- 123 (554)
.+.|...|+..||+|..+.+.++|+..++.+ ..+++||+|+.++ +.+++++|++.+ ..+||++++.......+
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~--~~iPVFl~~~~~~~~~~~ 92 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMN--ENLPLYAFANTYSTLDVS 92 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHC--TTCEEEEECCTTCCCCGG
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhC--CCCCEEEEecCCcccccc
Confidence 3457788889999999999999999999876 3699999999985 789999999876 78999999987542222
Q ss_pred HHHHHcCCCEEEeCCCCH-HHHHHHHHHHHHHH
Q 008761 124 VKCLRLGAADYLVKPLRT-NELLNLWTHMWRRR 155 (554)
Q Consensus 124 ~eAL~aGA~DyL~KP~~~-eeL~~~L~~llr~~ 155 (554)
.+. -.++++|+.+.... +.+...|.+..++.
T Consensus 93 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 93 LND-LRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp GTT-SCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhh-hhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 222 35789999998764 44445555554443
No 114
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.98 E-value=0.0014 Score=64.02 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=68.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...+||||||++..+..|..+|...|++|..+.+. . ...+|+||+|+.+|...+. ..
T Consensus 10 ~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~--------~-~~~~~~ii~d~~~~~~~~~--------------~~ 66 (254)
T 2ayx_A 10 SGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ--------E-PTPEDVLITDEVVSKKWQG--------------RA 66 (254)
T ss_dssp TTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC--------C-CCTTCEEEEESSCSCCCCS--------------SE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC--------C-CCcCcEEEEcCCCcccccc--------------ce
Confidence 46799999999999999999999999999877641 1 2369999999999875431 13
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
+|.++...... ....+...++.||+...++...+.++.
T Consensus 67 ~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 67 VVTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp EEEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred EEEEecccCCC----cccccCCceeccccchHHHHHHHHHHh
Confidence 56666532210 112355688999998887776665543
No 115
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.46 E-value=0.022 Score=49.56 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=82.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
...||+|-.+-.+.-.+++++....|.+++...-. .....|+|+|+..+-. +.|...+.....-+
T Consensus 12 ~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~--------~e~~AdlIfCEYlLLP-------e~ifS~k~~~~~dl 76 (121)
T 3q7r_A 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK--------QELSADLVVCEYSLLP-------REIRSPKSLEGSFV 76 (121)
T ss_dssp CEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC--------CCTTEEEEEEEGGGSC-------TTCCCCTTCCSCEE
T ss_pred CcEEEEEecCchhhHHHHHhcCCcceeEEeccccC--------CcccceeEEEeeecCh-------HHhcCCCCCCcccE
Confidence 45789999898889999999977789888665321 1236799999985532 12333333456778
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 112 IVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
||+=..-+.+..++.+..||. ||..|++..-|.+.|+..++.
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 888888889999999999999 999999999999998888765
No 116
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.43 E-value=0.094 Score=48.44 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=85.8
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC-C-cHHHHHHHHH
Q 008761 31 SKVRILLC----DNDSNSSDAVFSLLVKCSYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYIT 101 (554)
Q Consensus 31 skirVLIV----DDd~~~r~~L~~lL~~~g~eV~~---A~dg~EALe~L~~~~~~PDLILLDi~MP~-m-DGlElLr~Ir 101 (554)
.+.+||+. |-+..=...+..+|+..||+|+. ....++.++.+.+. +||+|.+-..+.. + .--++++.|+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~--~~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQE--DVDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT--TCSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEeechhhHHHHHHHHHHHH
Confidence 35688888 77777778888899999999983 34788888988877 8999999887654 2 2345667777
Q ss_pred hccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~r 156 (554)
+... .+++|+ +.+..-......+.+.|++.++..-.+..+....++.++...+
T Consensus 95 ~~g~-~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~~ 147 (161)
T 2yxb_A 95 ELGA-DDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEKR 147 (161)
T ss_dssp HTTC-TTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCC-CCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHhh
Confidence 6431 356655 4444444444456789999867655566777777777776544
No 117
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.95 E-value=0.019 Score=53.80 Aligned_cols=81 Identities=15% Similarity=0.306 Sum_probs=61.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEec-CCCCCcHH--HHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE-----
Q 008761 64 SPRQVIDALNAEGSDIDLILAEV-DLPMTKGL--KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL----- 135 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi-~MP~mDGl--ElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL----- 135 (554)
+..+.++.+.... .++|++.++ .++.++|+ ++++++... ..+|||.+++....+...++++.||++++
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~ 206 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 206 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHH
Confidence 4566666665542 467999997 67777774 466666543 58999999999999999999999999985
Q ss_pred -eCCCCHHHHHHHH
Q 008761 136 -VKPLRTNELLNLW 148 (554)
Q Consensus 136 -~KP~~~eeL~~~L 148 (554)
.+|++..++...+
T Consensus 207 ~~~~~~~~~~~~~l 220 (237)
T 3cwo_X 207 HFREIDVRELKEYL 220 (237)
T ss_dssp HTTSSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 6788888876643
No 118
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=94.78 E-value=0.99 Score=40.28 Aligned_cols=116 Identities=12% Similarity=0.042 Sum_probs=75.4
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCC-c-HHHHHHHHHh
Q 008761 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-K-GLKMLKYITR 102 (554)
Q Consensus 32 kirVLIV----DDd~~~r~~L~~lL~~~g~eV~---~A~dg~EALe~L~~~~~~PDLILLDi~MP~m-D-GlElLr~Ir~ 102 (554)
+.+|||. |-+..=...+..+|+..||+|+ .....++.++.+.+. +||+|.+-..+... . --++++.|++
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~--~~d~v~lS~~~~~~~~~~~~~i~~l~~ 80 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET--KADAILVSSLYGQGEIDCKGLRQKCDE 80 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH--TCSEEEEEECSSTHHHHHTTHHHHHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEecCcCcHHHHHHHHHHHHh
Confidence 4456554 2333445567778889999987 456799999999887 89999998877542 1 2346677776
Q ss_pred ccCCCCceEEEEecC----CCHH-HHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQ----DEVS-VVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~----~d~e-~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
.. ..+++|++=... .+.. ....+.++|++.|+.--.+..++...+..
T Consensus 81 ~g-~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 81 AG-LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp TT-CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred cC-CCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 53 235666543322 2222 24457899999888766667766655543
No 119
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=93.22 E-value=1.3 Score=44.38 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=79.2
Q ss_pred CcEEEEEeCCH------HHHHHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHH
Q 008761 32 KVRILLCDNDS------NSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLK 98 (554)
Q Consensus 32 kirVLIVDDd~------~~r~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr 98 (554)
-+++=|+-|+. .......+.|.+.||.|. +..|...|..+... .+++| +.+..| +..-+++++
T Consensus 105 ~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~---G~~aV-mPlg~pIGsG~Gi~~~~lI~ 180 (265)
T 1wv2_A 105 LVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEI---GCIAV-MPLAGLIGSGLGICNPYNLR 180 (265)
T ss_dssp EEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHS---CCSEE-EECSSSTTCCCCCSCHHHHH
T ss_pred eEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh---CCCEE-EeCCccCCCCCCcCCHHHHH
Confidence 45666663322 222234556667899877 67788877776543 58887 555544 233478999
Q ss_pred HHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHH
Q 008761 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~-----KP~~~eeL~~~L~~llr~~rl 157 (554)
.|.+. ..+|||+=..-...+.+.+||++||+..+. |--++..+...+...+..-|.
T Consensus 181 ~I~e~---~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~aGr~ 241 (265)
T 1wv2_A 181 IILEE---AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRL 241 (265)
T ss_dssp HHHHH---CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99874 678998866778899999999999999864 434455555555555544443
No 120
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=92.17 E-value=1 Score=43.82 Aligned_cols=89 Identities=13% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC------CCCCcHHHHHHHHHhccCCCCceEEEE
Q 008761 42 SNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD------LPMTKGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 42 ~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~------MP~mDGlElLr~Ir~~~~~~~iPIIVL 114 (554)
+.....+.+.+.+.|..+. .+.+.+++...... ..|+|.+-+. .+...+++++++|... .+|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~ipvIA~ 187 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAE 187 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TCCEEEE
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CCCEEEE
Confidence 3344455555566687665 77899999887754 5898864322 2234578999998752 7899988
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeC
Q 008761 115 SAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 115 Ss~~d~e~~~eAL~aGA~DyL~K 137 (554)
.+-.+.+.+.+++.+||+.++.=
T Consensus 188 GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 188 GRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCHHHHHHHHHcCCCEEEEc
Confidence 88888999999999999999763
No 121
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.17 E-value=1.9 Score=44.32 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=75.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC---CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC---SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~---g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
.++++.|+|.++...+.|...|.+. .|+|..+++.+.+.+.+++. ++||+|+|-.+..-. ..+. .
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~--~~dilli~e~~~~~~-----~~~~-----~ 87 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEY--RIDVLIAEEDFNIDK-----SEFK-----R 87 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHH--TCSEEEEETTCCCCG-----GGGC-----S
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcC--CCCEEEEcchhhhhh-----hhhc-----c
Confidence 5899999999999999999999643 58999999999999999887 899999998775521 1111 3
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
...+++++.....+ ...-...+.|--..+++...+..+.
T Consensus 88 ~~~v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 88 NCGLAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp SCEEEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 35677776643221 0112246788888888876665554
No 122
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=91.44 E-value=0.094 Score=32.87 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhccC.....
Q 008761 468 VDRREAALIKFRQKRKERC..... 486 (554)
Q Consensus 468 ~~~r~~~~~r~~~k~~~r~..... 486 (554)
+..|.+.|.||-||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 3469999999999999973
No 123
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=91.17 E-value=1.5 Score=41.53 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=69.5
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CcH-HHHHHHHHh
Q 008761 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPM-TKG-LKMLKYITR 102 (554)
Q Consensus 32 kirVLIV----DDd~~~r~~L~~lL~~~g~eV~~A~---dg~EALe~L~~~~~~PDLILLDi~MP~-mDG-lElLr~Ir~ 102 (554)
+.+||+. |-+..-...+..+|+..||+|.... ..++.++.+.+. +||+|.+-..++. +.. -++++.|++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY--QPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH--CCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHh
Confidence 4578888 6667777888889999999988433 577788888777 8999999887653 333 456777776
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
....+.+||++-....+.+. +-+.||+.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 43223477776655555443 35579887754
No 124
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=90.93 E-value=2.3 Score=42.54 Aligned_cols=116 Identities=9% Similarity=0.131 Sum_probs=76.1
Q ss_pred CcEEEEE----eCCHHHHHHHHHH--------HhhC-CCEEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC----C
Q 008761 32 KVRILLC----DNDSNSSDAVFSL--------LVKC-SYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPM----T 91 (554)
Q Consensus 32 kirVLIV----DDd~~~r~~L~~l--------L~~~-g~eV~~---A~dg~EALe~L~~~~~~PDLILLDi~MP~----m 91 (554)
+.+||+. |-+..=...+..+ |+.. ||+|+. .-..++.++.+.+. +||+|.+-..+.. +
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~--~~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVEL--EADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeecCCccchH
Confidence 5677665 4444445556666 8888 999873 33688888888877 8999999998875 3
Q ss_pred cHH-HHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 92 KGL-KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 92 DGl-ElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
..+ ++++.|++......++|++=....+.+ .+.+.||+.|..--....++...+...+
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~ 256 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTL 256 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHH
Confidence 332 466677664322236664444444433 3667899988877677777666555444
No 125
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.89 E-value=1.7 Score=42.29 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC------CCCCcHHHHHHHHHhccCCCCceEEEE
Q 008761 42 SNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD------LPMTKGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 42 ~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~------MP~mDGlElLr~Ir~~~~~~~iPIIVL 114 (554)
+.....+.+.+.+.|..+. .+.+.+++...... ..|+|.+-+. .+...+++++++|+.. .+|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~ 187 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAE 187 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEE
Confidence 3344455555666677665 77889998877654 4898864322 1234568999998862 6899988
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe
Q 008761 115 SAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 115 Ss~~d~e~~~eAL~aGA~DyL~ 136 (554)
++-.+.+.+.+++++||+.++.
T Consensus 188 GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 188 GRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 8888899999999999999976
No 126
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=90.46 E-value=3.4 Score=40.60 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=74.6
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCC-CcH-HHHHHHHH
Q 008761 31 SKVRILLC----DNDSNSSDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKG-LKMLKYIT 101 (554)
Q Consensus 31 skirVLIV----DDd~~~r~~L~~lL~~~g~eV~---~A~dg~EALe~L~~~~~~PDLILLDi~MP~-mDG-lElLr~Ir 101 (554)
...+||+. |-+..-...+..+|+..||+|+ .--..++.++.+... +||+|.+-..+.. +.. -++++.|+
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~--~~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKE--KPIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHH--CCSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeeccCCHHHHHHHHHHHH
Confidence 35678887 5566677788889999999986 234677888888877 8999999887664 333 45778887
Q ss_pred hccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ll 152 (554)
+.. ..+||++-......+. +-..||+.|..-. .+....++.++
T Consensus 200 ~~~--~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 200 ENG--IKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp TTT--CCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHH
T ss_pred hcC--CCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHH
Confidence 754 4577766555445443 2378987665533 33334444443
No 127
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=89.25 E-value=2.5 Score=47.43 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=78.9
Q ss_pred CCcEEEEEe---CCHHHHHH-H----HHHHhhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC----CcHH-
Q 008761 31 SKVRILLCD---NDSNSSDA-V----FSLLVKCSYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPM----TKGL- 94 (554)
Q Consensus 31 skirVLIVD---Dd~~~r~~-L----~~lL~~~g~eV~~---A~dg~EALe~L~~~~~~PDLILLDi~MP~----mDGl- 94 (554)
.+.+|||.- |--++-.. + ..+|+..||+|+. .-..++.++.+.+. +||+|.+-..|.. +..+
T Consensus 601 ~kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Ee--dADVVGLSsLLTt~dihL~~Mk 678 (763)
T 3kp1_A 601 TPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIEL--KADAILASTIISHDDIHYKNMK 678 (763)
T ss_dssp SCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCGGGHHHHHHH
T ss_pred cCCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCchhhHHHHH
Confidence 467888872 44444442 2 4678888999973 34789999999887 8999999988876 4444
Q ss_pred HHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 95 ElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
++++.|++......++||+=......+. +-+.||+.|..-.....++...|...+.
T Consensus 679 evIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~ 734 (763)
T 3kp1_A 679 RIHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRR 734 (763)
T ss_dssp HHHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHH
Confidence 4677777654222356554333444433 4589999998877777766665555443
No 128
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=88.92 E-value=3.2 Score=47.12 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=78.1
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-C-cHHHHHHHHH
Q 008761 31 SKVRILLC----DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYIT 101 (554)
Q Consensus 31 skirVLIV----DDd~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~-m-DGlElLr~Ir 101 (554)
.+.+|||. |-+..=...+..+|+..||+|+.- ...++.++.+.+. ++|+|.+-..|.. + ..-++++.|+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHhHHHHHHHHHHHHH
Confidence 35678776 333333445566778889999843 3678999998877 8999999887753 2 2356777887
Q ss_pred hccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
+... .+++ |++.+..-......+.+.|++.|+.--.+..++...+...++
T Consensus 673 ~~G~-~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 673 KLGR-PDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp HTTC-TTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hcCC-CCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 7542 2444 445542222233456889999999866677776666655543
No 129
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=87.69 E-value=3.2 Score=41.64 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=68.6
Q ss_pred HHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCc-----HHHHHHHHHhccCCCC-ceEEEEecCCCH
Q 008761 49 FSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK-----GLKMLKYITRDKELQR-IPVIMMSAQDEV 120 (554)
Q Consensus 49 ~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~mD-----GlElLr~Ir~~~~~~~-iPIIVLSs~~d~ 120 (554)
.+.|.+.||.|. +..|...|.++.. . .+++| +.+-.|-.. -.++++.|.+.. .. +|||+=..-...
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~ak~l~~-~--G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~--~~~vPVI~~GGI~tp 190 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLAKRLAA-L--GTATV-MPLAAPIGSGWGVRTRALLELFAREK--ASLPPVVVDAGLGLP 190 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHHHHHHH-H--TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTT--TTSSCBEEESCCCSH
T ss_pred HHHHHHCCCEEeeccCCCHHHHHHHHh-c--CCCEE-EecCccCcCCcccCCHHHHHHHHHhc--CCCCeEEEeCCCCCH
Confidence 345557799877 5567766655544 3 57877 666554222 256788887622 46 899986677888
Q ss_pred HHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHH
Q 008761 121 SVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRM 157 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~-----KP~~~eeL~~~L~~llr~~rl 157 (554)
+.+..+|++||+..+. |--++..+...+...+..-|.
T Consensus 191 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~agr~ 232 (268)
T 2htm_A 191 SHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRK 232 (268)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 444455566665555554444
No 130
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=87.24 E-value=7.7 Score=38.68 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=66.0
Q ss_pred EEEEEeC--CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC---CCCCcHHHHHHHHHhccCCC
Q 008761 34 RILLCDN--DSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD---LPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 34 rVLIVDD--d~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~---MP~mDGlElLr~Ir~~~~~~ 107 (554)
.|+|+.. +......+.......|..+. .+.+.+++...+.. .+|+|-+.-. ... -+++.+.+|...- ..
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~-~dl~~~~~l~~~v-~~ 212 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLD-VDRDCFARIAPGL-PS 212 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCC-BCTTHHHHHGGGS-CT
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccc-cCHHHHHHHHHhC-cc
Confidence 4555432 22333445555566788765 78899887766654 4888877532 112 2356677776542 12
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
.+|||..++-.+.+.+.+++++||+.+++=
T Consensus 213 ~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 213 SVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp TSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 689998888888999999999999999863
No 131
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=87.08 E-value=0.17 Score=32.09 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 008761 471 REAALIKFRQKRKERCFDK 489 (554)
Q Consensus 471 r~~~~~r~~~k~~~r~~~k 489 (554)
|.+.|.||-||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5678999999999986554
No 132
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=86.89 E-value=2 Score=41.35 Aligned_cols=100 Identities=10% Similarity=0.068 Sum_probs=69.0
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEE--ecCCCC-Cc-HHHHHHHH
Q 008761 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILA--EVDLPM-TK-GLKMLKYI 100 (554)
Q Consensus 32 kirVLIV----DDd~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILL--Di~MP~-mD-GlElLr~I 100 (554)
+.+||+. |-+..=...+..+|+..||+|+.. -..++.++.+.+. +||+|.+ -..|.. +. --++++.|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~--~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKH--KGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHT--TTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHc--CCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4678877 556666677888889999998743 3678888888887 8999999 776642 33 34577777
Q ss_pred HhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 101 TRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
++......+||++=...-..+. +-+.||+.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 7754222577766555555443 34679988854
No 133
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=86.31 E-value=8.4 Score=37.76 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=54.1
Q ss_pred CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHH
Q 008761 57 YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (554)
Q Consensus 57 ~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~-------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~ 128 (554)
..+. ++.+.+|+.+.... .+|.|.+.-..|. .-|++.++++.... ...+|||.+.+- +.+.+.+++.
T Consensus 136 ~~iG~S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI-~~~ni~~~~~ 210 (243)
T 3o63_A 136 TLIGRSTHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGI-NAQRLPAVLD 210 (243)
T ss_dssp CEEEEEECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHHHHHH
T ss_pred CEEEEeCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCC-CHHHHHHHHH
Confidence 3444 78899998877653 5899998664432 23788899887531 137899999876 5567888999
Q ss_pred cCCCEEEe
Q 008761 129 LGAADYLV 136 (554)
Q Consensus 129 aGA~DyL~ 136 (554)
+||+.+..
T Consensus 211 aGa~gvav 218 (243)
T 3o63_A 211 AGARRIVV 218 (243)
T ss_dssp TTCCCEEE
T ss_pred cCCCEEEE
Confidence 99999864
No 134
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=85.98 E-value=5.7 Score=45.38 Aligned_cols=121 Identities=10% Similarity=0.069 Sum_probs=80.5
Q ss_pred CCcEEEEEe----CCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-C-cHHHHHHHHH
Q 008761 31 SKVRILLCD----NDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYIT 101 (554)
Q Consensus 31 skirVLIVD----Dd~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~-m-DGlElLr~Ir 101 (554)
.+.+|||.- -+..=...+..+|+..||+|+.- .+.++.++.+.+. .+|+|.+-..|.. + ..-++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDA--DVHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHHHHHHHHHHHHHHH
Confidence 356787763 23333445666888889999843 3678999998877 7999999877653 2 2356777887
Q ss_pred hccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+... .+++ |++.+..-......+.+.|++.|+..-.+..++...+..++...
T Consensus 681 ~~G~-~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 681 SLGR-PDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp HTTC-TTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCC-CCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 7542 2444 44554222223345678999999987678888777777766543
No 135
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=85.09 E-value=9.7 Score=40.20 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=68.3
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecC-----------CCCCcHH
Q 008761 32 KVRILLCDN----DSNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVD-----------LPMTKGL 94 (554)
Q Consensus 32 kirVLIVDD----d~~~r~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~-----------MP~mDGl 94 (554)
.+.++++|- +..+.+.+..+-+..+..|+ .+.+.++|..++.. ..|.|++... -.+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 356777752 33445555555444466554 68899999888765 4899998421 0112346
Q ss_pred HHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 95 ElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+++..+........+|||.-.+-.+...+.+++.+||+....
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 777777653222478999888888889999999999998864
No 136
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=84.07 E-value=9.8 Score=35.81 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=53.6
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHH
Q 008761 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127 (554)
Q Consensus 56 g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~-------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL 127 (554)
+..+. .+.+.+++.+.... ..|.|+++-..+. .-|++.++.++.. ..+||++..+- +.+.+.+++
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~---~~~pvia~GGI-~~~nv~~~~ 182 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR---ISIPVIAIGGM-TPDRLRDVK 182 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHH---CCSCEEEESSC-CGGGHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHH
Confidence 55444 67788888776653 5899999764332 2368888888764 37898888776 778888999
Q ss_pred HcCCCEEEe
Q 008761 128 RLGAADYLV 136 (554)
Q Consensus 128 ~aGA~DyL~ 136 (554)
++||+.+..
T Consensus 183 ~~Ga~gv~v 191 (221)
T 1yad_A 183 QAGADGIAV 191 (221)
T ss_dssp HTTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999998754
No 137
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=81.56 E-value=16 Score=33.91 Aligned_cols=97 Identities=10% Similarity=0.064 Sum_probs=58.1
Q ss_pred EEEEeCCH--HHHHHHHHHHhhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEecCCC----CCcHHHHHHHHHhcc
Q 008761 35 ILLCDNDS--NSSDAVFSLLVKCSYQVTSV----RSPRQVIDALNAEGSDIDLILAEVDLP----MTKGLKMLKYITRDK 104 (554)
Q Consensus 35 VLIVDDd~--~~r~~L~~lL~~~g~eV~~A----~dg~EALe~L~~~~~~PDLILLDi~MP----~mDGlElLr~Ir~~~ 104 (554)
.+++-+.+ .....+.+.+++.|..+... .+..+.++.+... ..|+|.++.... ...+++.+++|++..
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~--g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~ 157 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA--GADMLAVHTGTDQQAAGRKPIDDLITMLKVR 157 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH--TCCEEEEECCHHHHHTTCCSHHHHHHHHHHC
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc--CCCEEEEcCCCcccccCCCCHHHHHHHHHHc
Confidence 34444443 33345556666667766532 3444444444444 478887762211 113578888888752
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+.+||++-.+- ..+.+.+++++||+.++.
T Consensus 158 --~~~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 158 --RKARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp --SSCEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred --CCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 46788766554 367788899999999864
No 138
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=81.12 E-value=17 Score=33.57 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=52.2
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHH
Q 008761 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127 (554)
Q Consensus 56 g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~-------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL 127 (554)
+..+. .+.+..++..... . ..|.|+++-..|. ..+++.++++++. ..+||++..+-. .+.+.+++
T Consensus 108 ~~~~~v~~~t~~e~~~~~~-~--g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~pvia~GGI~-~~nv~~~~ 180 (215)
T 1xi3_A 108 NLIIGASVYSLEEALEAEK-K--GADYLGAGSVFPTKTKEDARVIGLEGLRKIVES---VKIPVVAIGGIN-KDNAREVL 180 (215)
T ss_dssp TSEEEEEESSHHHHHHHHH-H--TCSEEEEECSSCC----CCCCCHHHHHHHHHHH---CSSCEEEESSCC-TTTHHHHH
T ss_pred CCEEEEecCCHHHHHHHHh-c--CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh---CCCCEEEECCcC-HHHHHHHH
Confidence 44433 5678888766544 3 5899998764443 3578899988764 368988776655 66777888
Q ss_pred HcCCCEEEe
Q 008761 128 RLGAADYLV 136 (554)
Q Consensus 128 ~aGA~DyL~ 136 (554)
+.||+.+..
T Consensus 181 ~~Ga~gv~v 189 (215)
T 1xi3_A 181 KTGVDGIAV 189 (215)
T ss_dssp TTTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999999853
No 139
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=80.43 E-value=17 Score=37.87 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=68.2
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----------CCCcH
Q 008761 32 KVRILLCD----NDSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL-----------PMTKG 93 (554)
Q Consensus 32 kirVLIVD----Dd~~~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~M-----------P~mDG 93 (554)
...+++|| +.+...+.++.+-+.. +..|+ .+.+.++|..+... ..|.|.+.+.- .+...
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~gpGs~~~tr~~~g~g~p~ 196 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQ 196 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTBCHHHHHCCCCCH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecCCCCCCCcccccCcccch
Confidence 45677776 3445555555555554 45543 58899999988765 48999984221 11234
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
++++..+........+|||....-.+...+.+++.+||+....
T Consensus 197 ~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 197 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5666666542222468999888888888999999999988854
No 140
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=79.48 E-value=7.7 Score=38.26 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=52.4
Q ss_pred CCEEE--EECCHHHHHHHHHhcCCCceEEEE-ecCCC---CCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHc
Q 008761 56 SYQVT--SVRSPRQVIDALNAEGSDIDLILA-EVDLP---MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL 129 (554)
Q Consensus 56 g~eV~--~A~dg~EALe~L~~~~~~PDLILL-Di~MP---~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~a 129 (554)
|+.+. ++.+.+++...... ..|.|+. -...+ +..+.++++++++. ..+|||+..+-.+.+.+.+++.+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~ 199 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMEL 199 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHT
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHc
Confidence 66555 55677766655543 4677633 00001 23357888999874 57899999888888999999999
Q ss_pred CCCEEEeC
Q 008761 130 GAADYLVK 137 (554)
Q Consensus 130 GA~DyL~K 137 (554)
||+.++.=
T Consensus 200 GAdgViVG 207 (264)
T 1xm3_A 200 GADGVLLN 207 (264)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEc
Confidence 99998653
No 141
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=78.93 E-value=15 Score=36.99 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=69.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
...+.|-+.-.++.+...+..+|...-|.+..+.+.++.++.+..+...+|.+|+... +..-..+...|.+.. .-.
T Consensus 7 ~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g--~lL 82 (289)
T 1r8j_A 7 LSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEG--VVV 82 (289)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTT--CCC
T ss_pred ccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcC--ccc
Confidence 3578898999999999999999988889999999999999999887778999998762 223567788888766 567
Q ss_pred eEEEEecC
Q 008761 110 PVIMMSAQ 117 (554)
Q Consensus 110 PIIVLSs~ 117 (554)
|+|++...
T Consensus 83 P~vil~~~ 90 (289)
T 1r8j_A 83 PAIVVGDR 90 (289)
T ss_dssp CEEEESCC
T ss_pred cEEEeccC
Confidence 99988664
No 142
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=77.94 E-value=34 Score=34.50 Aligned_cols=108 Identities=12% Similarity=0.080 Sum_probs=61.2
Q ss_pred CCcCCCCCcEEEEEeCCHHHHH-HHHHHHhhCCCEEE-EE-CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 25 DGFIDRSKVRILLCDNDSNSSD-AVFSLLVKCSYQVT-SV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 25 ~~~~~mskirVLIVDDd~~~r~-~L~~lL~~~g~eV~-~A-~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
...+.|+++||.||.--..-+. .+..+....+++|+ .+ .+.+.+.+..... ....+ -|+ +.+-
T Consensus 20 ~~~~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--g~~~~-~~~-----------~~ll 85 (350)
T 3rc1_A 20 ENPANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF--GGEPV-EGY-----------PALL 85 (350)
T ss_dssp ------CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH--CSEEE-ESH-----------HHHH
T ss_pred CCCCCCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc--CCCCc-CCH-----------HHHh
Confidence 3445677899999998766553 34444444478776 33 3555555554433 22222 222 2222
Q ss_pred hccCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
.. ..+-+|+++... ..+.+..|+++|..=++.||+. .++..+.++
T Consensus 86 ~~---~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~ 134 (350)
T 3rc1_A 86 ER---DDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFA 134 (350)
T ss_dssp TC---TTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred cC---CCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 22 345667666543 3667889999999999999975 455554443
No 143
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=77.45 E-value=28 Score=37.58 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=67.1
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC-----------CcH
Q 008761 32 KVRILLCD----NDSNSSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM-----------TKG 93 (554)
Q Consensus 32 kirVLIVD----Dd~~~r~~L~~lL~~~g-~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~-----------mDG 93 (554)
...+++|| +...+.+.+..+-+..+ ..|+ .+.+.+.|..++.. ..|.|++.+.-.. ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 46678887 33444455555555543 3333 67788888887765 4898887442211 234
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
++++..+.+......+|||.-.+-.....+.+|+.+||+..+.=
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 55555554322224689998888888999999999999998653
No 144
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=76.69 E-value=22 Score=35.71 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=58.9
Q ss_pred HHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC----C---CcHHHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 49 FSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP----M---TKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 49 ~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP----~---mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
.+.+...|..|. .+.+.+++...... ..|.|+++-.-+ + ...++++++++.. ..+|||+-.+-.+.
T Consensus 111 ~~~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPviaaGGI~~~ 184 (328)
T 2gjl_A 111 IAEFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPIIASGGFADG 184 (328)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEEEESSCCSH
T ss_pred HHHHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEEEECCCCCH
Confidence 344455566655 57788888776654 489999853222 1 2567888888764 47899988888788
Q ss_pred HHHHHHHHcCCCEEEe
Q 008761 121 SVVVKCLRLGAADYLV 136 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~ 136 (554)
+.+.+++.+||+.+..
T Consensus 185 ~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 185 RGLVAALALGADAINM 200 (328)
T ss_dssp HHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8899999999998864
No 145
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=76.29 E-value=18 Score=36.65 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=59.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
|.|++++|.||.--..-+..+. .|... ++++. .+..-.+..+.+.. +.+-.. .|--+++ ..
T Consensus 1 M~m~~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~~------~~~~~ll----~~-- 63 (359)
T 3e18_A 1 MSLKKYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAAQ----KGLKIY------ESYEAVL----AD-- 63 (359)
T ss_dssp --CCCEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHHT----TTCCBC------SCHHHHH----HC--
T ss_pred CCCCcCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHHh----cCCcee------CCHHHHh----cC--
Confidence 3467899999997665554444 45444 78876 44433333344332 222110 1222232 22
Q ss_pred CCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 106 LQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 106 ~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
..+-+|+++... ..+.+..|+++|..=++.||+. .++..+.++.
T Consensus 64 -~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 111 (359)
T 3e18_A 64 -EKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDV 111 (359)
T ss_dssp -TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred -CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHH
Confidence 345666666543 3667899999999999999975 4555554443
No 146
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=74.86 E-value=21 Score=36.16 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=59.0
Q ss_pred HHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCC-CC----CcHHHHHHHHHhccCCCCceEEEEecCCCHHHH
Q 008761 50 SLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDL-PM----TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV 123 (554)
Q Consensus 50 ~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~M-P~----mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~ 123 (554)
+.|...|..|. .+.+.++|...... .+|.|+++-.- .+ ...++++..+... ..+|||+-.+-.+.+.+
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---~~iPviaaGGI~~~~dv 191 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIAAGGIADGRGM 191 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHH---cCCCEEEECCCCCHHHH
Confidence 44455566655 56788888776643 48999886422 12 3468888888764 46899988888888999
Q ss_pred HHHHHcCCCEEEe
Q 008761 124 VKCLRLGAADYLV 136 (554)
Q Consensus 124 ~eAL~aGA~DyL~ 136 (554)
.+++.+||+.+..
T Consensus 192 ~~al~~GA~gV~v 204 (326)
T 3bo9_A 192 AAAFALGAEAVQM 204 (326)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHhCCCEEEe
Confidence 9999999999864
No 147
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=74.46 E-value=21 Score=36.90 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=64.1
Q ss_pred cEEEEEe----CCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----------CCCcHHH
Q 008761 33 VRILLCD----NDSNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL-----------PMTKGLK 95 (554)
Q Consensus 33 irVLIVD----Dd~~~r~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~M-----------P~mDGlE 95 (554)
..+++|| +...+.+.+..+-+..+..|+ .+.+.++|..++.. ..|.|.+-+.- .+...++
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~~ 194 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQIT 194 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHHH
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcHH
Confidence 4456664 333445555555555465544 67888888887764 48999883210 0123455
Q ss_pred HHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 96 MLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 96 lLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
++..+........+|||.-..-.+...+.+++.+||+....
T Consensus 195 ~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 195 AIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 56655432111368998887877888999999999998854
No 148
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=74.45 E-value=28 Score=35.64 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=56.3
Q ss_pred hhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCC---------CC-------CcHHHHHHHHHhccCCCCceEEEEe
Q 008761 53 VKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDL---------PM-------TKGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 53 ~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~M---------P~-------mDGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
...|..|. .+.+.+++...... .+|.|+++-.- +. ...++++++++.. ..+|||+..
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~---~~iPViaaG 215 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---VDIPVVAAG 215 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---CSSCEEEES
T ss_pred HHCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh---cCceEEEEC
Confidence 34566555 67788887766543 58999995311 10 2348899998864 478998888
Q ss_pred cCCCHHHHHHHHHcCCCEEEe
Q 008761 116 AQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 116 s~~d~e~~~eAL~aGA~DyL~ 136 (554)
+-.+.+.+.+++.+||+.+..
T Consensus 216 GI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 216 GIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp SCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 877889999999999988754
No 149
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=74.45 E-value=46 Score=29.44 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=71.5
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 32 KVRILLCDNDS-NSSDAVFSLLVKCSYQVTS-V--RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 32 kirVLIVDDd~-~~r~~L~~lL~~~g~eV~~-A--~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
.++++|+.+.. .....+..++...+ .|.. . -+.++..+.+. ..|++|+-... ..-|+.+++.+. .
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a-----~ 138 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC-----L 138 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH-----T
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH-----C
Confidence 57888888754 24566777777766 4444 3 35556666664 46988885443 334677887776 4
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
.+|||+. .. ....+.+ .|...++..|.+.++|...|..++.
T Consensus 139 G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 139 GAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp TCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 5787643 22 2334445 7888999999999999999988876
No 150
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=73.49 E-value=25 Score=35.09 Aligned_cols=109 Identities=11% Similarity=0.125 Sum_probs=64.4
Q ss_pred CCcCCCCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 25 DGFIDRSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 25 ~~~~~mskirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
+.+..++|+||-||.--..-+..+...|... +++|+ ++. +.+.|-+..+.. ...-+.-|+ +.|-
T Consensus 16 ~n~~~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--g~~~~y~d~-----------~ell 82 (350)
T 4had_A 16 ENLYFQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRF--SVPHAFGSY-----------EEML 82 (350)
T ss_dssp ------CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHH--TCSEEESSH-----------HHHH
T ss_pred ccccccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc--CCCeeeCCH-----------HHHh
Confidence 3344456899999997766655555666554 67776 444 555555555443 222233232 2232
Q ss_pred hccCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
.. ..+-+|+|+.... .+.+.+|+++|-.=|+.||+. .++..+.++
T Consensus 83 ~~---~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 131 (350)
T 4had_A 83 AS---DVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIA 131 (350)
T ss_dssp HC---SSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHH
T ss_pred cC---CCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHH
Confidence 22 4567777766444 678999999999999999985 455444443
No 151
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=73.42 E-value=20 Score=36.35 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=60.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~-~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
|.|+++||.||.--..-...+...|.. .+++++ .+..-.+..+.+.+. .+.+-+. .|--+++. .
T Consensus 1 M~M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~--~~~~~~~------~~~~~ll~----~-- 66 (359)
T 3m2t_A 1 MSLSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRF--ISDIPVL------DNVPAMLN----Q-- 66 (359)
T ss_dssp --CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGT--SCSCCEE------SSHHHHHH----H--
T ss_pred CCCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHh--cCCCccc------CCHHHHhc----C--
Confidence 346789999999877665534444544 467776 444333333333322 1111111 12223332 2
Q ss_pred CCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 106 LQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 106 ~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
+.+-+|+++... -.+.+..|+++|..=|+.||+. .++..+.++.
T Consensus 67 -~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~ 114 (359)
T 3m2t_A 67 -VPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDA 114 (359)
T ss_dssp -SCCSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHH
T ss_pred -CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHH
Confidence 345666666543 3567889999999999999975 4555554443
No 152
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=73.34 E-value=40 Score=34.57 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=65.2
Q ss_pred cEEEEEe----CCHHHHHHHHHHHhhC-CCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCCC------------CcH
Q 008761 33 VRILLCD----NDSNSSDAVFSLLVKC-SYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLPM------------TKG 93 (554)
Q Consensus 33 irVLIVD----Dd~~~r~~L~~lL~~~-g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi~MP~------------mDG 93 (554)
..++.++ +.....+.+..+-+.. +..| ..+.+.++|..++.. ..|.|.+... ++ ..-
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p~ 208 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYPQ 208 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCCH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCccH
Confidence 4566665 3344455555554444 4443 367889999888765 4898877532 21 123
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCC
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPL 139 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy-L~KP~ 139 (554)
++++..+........+|||.-.+-.+...+.+||.+||+.. +-++|
T Consensus 209 ~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 44444443322113689998888888999999999999987 45565
No 153
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=73.19 E-value=31 Score=34.47 Aligned_cols=87 Identities=9% Similarity=0.022 Sum_probs=59.4
Q ss_pred HHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCC---CCCcHHHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 45 SDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDL---PMTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~M---P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
...|.......|.++. .+++.+|+...+.. .+|+|=+...- -..| ++.+.+|...- ...+|+|.-++-...
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~i-p~~~~vIaesGI~t~ 232 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMA-PSDRLLVGESGIFTH 232 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHS-CTTSEEEEESSCCSH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhC-CCCCcEEEECCCCCH
Confidence 3344444556788765 88899998766643 58988765321 1222 45555554432 136788888888899
Q ss_pred HHHHHHHHcCCCEEEe
Q 008761 121 SVVVKCLRLGAADYLV 136 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~ 136 (554)
+.+.++.++||+.+|+
T Consensus 233 edv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 233 EDCLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999975
No 154
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=72.47 E-value=22 Score=36.16 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
|+++||.||.--..-...+...|...+++++ .+. +.+.+.+..... ...-+.. |- +.+-.. +
T Consensus 24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--~~~~~~~-------~~----~~ll~~---~ 87 (361)
T 3u3x_A 24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVY--ADARRIA-------TA----EEILED---E 87 (361)
T ss_dssp --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHS--SSCCEES-------CH----HHHHTC---T
T ss_pred ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHc--CCCcccC-------CH----HHHhcC---C
Confidence 4579999999654443445555556788876 444 455454444432 1111121 11 222222 4
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 108 ~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
.+-+|+|+... -.+.+..|+++|-.=|+.||+. .++..+.++
T Consensus 88 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 133 (361)
T 3u3x_A 88 NIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRR 133 (361)
T ss_dssp TCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHH
Confidence 56677776543 3667899999999999999975 455554443
No 155
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=72.09 E-value=24 Score=34.85 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=67.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g--~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
.++++|+.+.+. ..+..++.... +.+.-.-+..+..+.+.. .|++|+-..-.+.-|+.+++.+. ..+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a-----~G~ 308 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA-----AGT 308 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH-----HTC
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH-----cCC
Confidence 467777776655 45555554321 222222344555666653 47777753212334667777775 356
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|||+. .. ....+.+..|...++..|.+.++|...|..++...
T Consensus 309 PvI~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 350 (406)
T 2gek_A 309 AVVAS-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILEDD 350 (406)
T ss_dssp EEEEC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCH
T ss_pred CEEEe-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCH
Confidence 87643 22 34556777788899999999999999998887643
No 156
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=71.87 E-value=26 Score=35.34 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=56.9
Q ss_pred HHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHH
Q 008761 51 LLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (554)
Q Consensus 51 lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~ 124 (554)
.++..|+.|. .+.+.++|...... .+|.|+++-.-. ....++++++++.. ..+|||+..+-.+.+.+.
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~---~~iPViaaGGI~~~~~~~ 178 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATA---ISIPVIAAGGIADGEGAA 178 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHHH
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHh---cCCCEEEECCCCCHHHHH
Confidence 3444566555 56777777665543 589999863211 23458889998865 468999888888889999
Q ss_pred HHHHcCCCEEEe
Q 008761 125 KCLRLGAADYLV 136 (554)
Q Consensus 125 eAL~aGA~DyL~ 136 (554)
+++.+||+.+..
T Consensus 179 ~al~~GAdgV~v 190 (332)
T 2z6i_A 179 AGFMLGAEAVQV 190 (332)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcCCCEEEe
Confidence 999999988754
No 157
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=71.64 E-value=21 Score=33.32 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=57.7
Q ss_pred HHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecC-----CC----CCcHHHHHHHHHhccCCCCceEEE
Q 008761 45 SDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD-----LP----MTKGLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 45 r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~-----MP----~mDGlElLr~Ir~~~~~~~iPIIV 113 (554)
.+.+..+-+.. +..+. .+.+.+++.+.... ..|+|.+-.. .. ...+++++++++.. ..+|||+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~---~~ipvia 180 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS---VDAKVIA 180 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH---CCSEEEE
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh---CCCCEEE
Confidence 33344433332 55543 66788888775543 4788765321 01 12356788888864 4689998
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeC
Q 008761 114 MSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 114 LSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
..+-.+.+.+.+++++||+.++.=
T Consensus 181 ~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 181 EGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ecCCCCHHHHHHHHHcCCCEEEEC
Confidence 888878999999999999998763
No 158
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=70.93 E-value=11 Score=35.18 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=54.5
Q ss_pred HHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCcHHHHHHHHHhccCCC-CceEEEEecCCCHHHHHHH
Q 008761 50 SLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKC 126 (554)
Q Consensus 50 ~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mDGlElLr~Ir~~~~~~-~iPIIVLSs~~d~e~~~eA 126 (554)
+.....|..+. .+.+..++.+.... ..|.|++ .| ...|++.+++|.+.. + .+||++..+-. .+.+.++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~--~~~ipvia~GGI~-~~~i~~~ 165 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVL--PSDIAVFAVGGVT-PENLAQW 165 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTS--CTTCEEEEESSCC-TTTHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhc--cCCCeEEEeCCCC-HHHHHHH
Confidence 44455565533 57889998776543 5899886 22 123688888887642 2 58998887755 5677888
Q ss_pred HHcCCCEEEeC
Q 008761 127 LRLGAADYLVK 137 (554)
Q Consensus 127 L~aGA~DyL~K 137 (554)
+++||+.++.=
T Consensus 166 ~~~Ga~gv~vG 176 (212)
T 2v82_A 166 IDAGCAGAGLG 176 (212)
T ss_dssp HHHTCSEEEEC
T ss_pred HHcCCCEEEEC
Confidence 89999999643
No 159
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=70.71 E-value=35 Score=31.78 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=47.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCC--------CCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDLP--------MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~MP--------~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~ 132 (554)
.+.+..++..... . ..|.|++..-.| ...|++.++++++.. ..+||++..+-. .+.+.+++.+||+
T Consensus 122 s~~t~~e~~~a~~-~--g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~--~~~pvia~GGI~-~~nv~~~~~~Ga~ 195 (227)
T 2tps_A 122 SAHTMSEVKQAEE-D--GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGGIT-IDNAAPVIQAGAD 195 (227)
T ss_dssp EECSHHHHHHHHH-H--TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESSCC-TTTSHHHHHTTCS
T ss_pred ecCCHHHHHHHHh-C--CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC--CCCCEEEEcCCC-HHHHHHHHHcCCC
Confidence 4578888665553 3 589998732222 123788899988642 238988877655 5667778889999
Q ss_pred EEEe
Q 008761 133 DYLV 136 (554)
Q Consensus 133 DyL~ 136 (554)
.+..
T Consensus 196 gv~v 199 (227)
T 2tps_A 196 GVSM 199 (227)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8853
No 160
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=69.48 E-value=61 Score=34.72 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=67.5
Q ss_pred cEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----------CCCcHH
Q 008761 33 VRILLCD----NDSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL-----------PMTKGL 94 (554)
Q Consensus 33 irVLIVD----Dd~~~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~M-----------P~mDGl 94 (554)
..++++| ......+.+..+-+.. +..|+ .+.+.++|..++.. ..|.|.+.+.- .+...+
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g~Gs~~~t~~~~g~g~p~~ 318 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIGPGSICTTRIVAGVGVPQI 318 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHTCBCCCHH
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCCCCcCCCccccCCCCccHH
Confidence 5677776 4445556666665554 44443 47888888887765 48999873210 012345
Q ss_pred HHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 95 ElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+++..+.+......+|||.-.+-.....+.+|+.+||+..+.
T Consensus 319 ~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 319 SAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 666666653222479999888888889999999999998865
No 161
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=69.33 E-value=58 Score=30.47 Aligned_cols=117 Identities=12% Similarity=0.209 Sum_probs=68.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEe----------cCCC----CCcHHHH
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAE----------VDLP----MTKGLKM 96 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLD----------i~MP----~mDGlEl 96 (554)
+.+|+++-..+.+...+..++...+.++. ...+.+++++..+.....+|+||.- +..| ..+|+++
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Di 83 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDT 83 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHH
Confidence 46899999999999988888876665654 5567888888776622368988842 1233 3566666
Q ss_pred HHHHHhccCCCCceEEEEecC---CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008761 97 LKYITRDKELQRIPVIMMSAQ---DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (554)
Q Consensus 97 Lr~Ir~~~~~~~iPIIVLSs~---~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~l 151 (554)
++.|....... -.|-+++-. .......+.+.....-|.. .+.+++...++.+
T Consensus 84 l~al~~a~~~~-~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~--~~~~e~~~~i~~l 138 (196)
T 2q5c_A 84 MRAVYNAKRFG-NELALIAYKHSIVDKHEIEAMLGVKIKEFLF--SSEDEITTLISKV 138 (196)
T ss_dssp HHHHHHHGGGC-SEEEEEEESSCSSCHHHHHHHHTCEEEEEEE--CSGGGHHHHHHHH
T ss_pred HHHHHHHHhhC-CcEEEEeCcchhhHHHHHHHHhCCceEEEEe--CCHHHHHHHHHHH
Confidence 66666544322 245555432 2334444444443222222 2345555555544
No 162
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=69.17 E-value=1.7 Score=43.30 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=46.9
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHhhCCCEEEEECCHHH--HHHHHHhcCCCceEEEEecCCC-CC--cHHHHHHHHHhcc
Q 008761 32 KVRILLCDND--SNSSDAVFSLLVKCSYQVTSVRSPRQ--VIDALNAEGSDIDLILAEVDLP-MT--KGLKMLKYITRDK 104 (554)
Q Consensus 32 kirVLIVDDd--~~~r~~L~~lL~~~g~eV~~A~dg~E--ALe~L~~~~~~PDLILLDi~MP-~m--DGlElLr~Ir~~~ 104 (554)
+.+||||+++ +.....|..+|+..||+|.......- -.+.|. .+|+||++-... .+ +-++.|+..-+.
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~d~~~~~l~~~~~~~L~~yV~~- 78 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILSDYPAERMTAQAIDQLVTMVKA- 78 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEESCCGGGBCHHHHHHHHHHHHT-
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEcCCccccCCHHHHHHHHHHHHh-
Confidence 5699999988 66778899999999998876553221 123343 589999873211 12 234444443332
Q ss_pred CCCCceEEEEecC
Q 008761 105 ELQRIPVIMMSAQ 117 (554)
Q Consensus 105 ~~~~iPIIVLSs~ 117 (554)
.--+|++...
T Consensus 79 ---GGgLi~~gG~ 88 (259)
T 3rht_A 79 ---GCGLVMLGGW 88 (259)
T ss_dssp ---TCEEEEECST
T ss_pred ---CCeEEEecCc
Confidence 3456666553
No 163
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=68.84 E-value=23 Score=39.20 Aligned_cols=101 Identities=14% Similarity=0.231 Sum_probs=68.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-Cc-HHHHHHHHHh
Q 008761 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM-TK-GLKMLKYITR 102 (554)
Q Consensus 32 kirVLIV----DDd~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~-mD-GlElLr~Ir~ 102 (554)
+.+|||. |-+..-..++..+|+..||+|+.. -..++.++.+.+. +||+|.+-..+.. ++ --++++.|++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~--~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEV--NADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHH--TCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5678887 555566677788889999998743 3688888888877 8999999887753 22 2346677776
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHc-----CCCEEEeCC
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRL-----GAADYLVKP 138 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~a-----GA~DyL~KP 138 (554)
.. ..+||++-......+... -+. ||+.|..--
T Consensus 176 ~g--~~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~DA 212 (579)
T 3bul_A 176 QG--FTIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQNA 212 (579)
T ss_dssp TT--CCSCEEEESTTCCHHHHH--HHTGGGCSSCEEECCSH
T ss_pred cC--CCCeEEEEccccchhhhh--hhhhhcccCCeEEECCH
Confidence 54 468876655555544332 233 887776543
No 164
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=68.10 E-value=27 Score=33.24 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=50.5
Q ss_pred HHHHHhhCCCEEE-EEC--CHHHHHHHHHhcCCCce-EEEEecCCCCCc---------HHHHHHHHHhccCCCCceEEEE
Q 008761 48 VFSLLVKCSYQVT-SVR--SPRQVIDALNAEGSDID-LILAEVDLPMTK---------GLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 48 L~~lL~~~g~eV~-~A~--dg~EALe~L~~~~~~PD-LILLDi~MP~mD---------GlElLr~Ir~~~~~~~iPIIVL 114 (554)
+.+.+++.|..+. .+. +..+.++.+... .| +|.+ +..++.. +++.+++|++. ..+||++-
T Consensus 125 ~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~---~~~pi~~~ 197 (248)
T 1geq_A 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRI---CRNKVAVG 197 (248)
T ss_dssp HHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHH---CSSCEEEE
T ss_pred HHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhh---cCCCEEEE
Confidence 3444444555443 222 456666666543 34 5544 3335432 35677888764 36898877
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeC
Q 008761 115 SAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 115 Ss~~d~e~~~eAL~aGA~DyL~K 137 (554)
.+-...+.+.+++.+||+.++.=
T Consensus 198 GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 198 FGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEEC
T ss_pred eecCCHHHHHHHHHcCCCEEEEc
Confidence 77777688888989999999864
No 165
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=66.93 E-value=70 Score=31.88 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=59.8
Q ss_pred HHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHH
Q 008761 48 VFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (554)
Q Consensus 48 L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~e 125 (554)
|++.|......+. .-.+..+.++.+... .+|.|++|++=...+--++...++... ....+++|=+...+...+..
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~-~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIA-PYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHT-TSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHH-hcCCCEEEEECCCCHHHHHH
Confidence 5555654322333 223444555666554 699999999665555555555555432 23566666666667778889
Q ss_pred HHHcCCCEEEe-CCCCHHHHHHHHH
Q 008761 126 CLRLGAADYLV-KPLRTNELLNLWT 149 (554)
Q Consensus 126 AL~aGA~DyL~-KP~~~eeL~~~L~ 149 (554)
+++.|++..+. |--+.+++...++
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~ 131 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVR 131 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 99999987644 3345677555443
No 166
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=66.69 E-value=14 Score=36.84 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=37.7
Q ss_pred HHHHHHHHhccCCCCceEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQD------EVSVVVKCLRLGAADYLVKPLRTNELLNL 147 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~------d~e~~~eAL~aGA~DyL~KP~~~eeL~~~ 147 (554)
++++++|++.. ..+||++++-.+ -...+.++.++|++.+|.-....++....
T Consensus 83 ~~~v~~ir~~~--~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~ 140 (267)
T 3vnd_A 83 FDIITKVRAQH--PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPF 140 (267)
T ss_dssp HHHHHHHHHHC--TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHH
T ss_pred HHHHHHHHhcC--CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHH
Confidence 67777777642 578999997532 24568889999999999977777664443
No 167
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=66.48 E-value=23 Score=34.69 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHHhccCCCCceEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008761 93 GLKMLKYITRDKELQRIPVIMMSAQDE------VSVVVKCLRLGAADYLVKPLRTNELLNLW 148 (554)
Q Consensus 93 GlElLr~Ir~~~~~~~iPIIVLSs~~d------~e~~~eAL~aGA~DyL~KP~~~eeL~~~L 148 (554)
.++++++|++. .+.+||++++-... ...+..+.++|++.++.-.+..+++...+
T Consensus 81 ~~~~v~~ir~~--~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~ 140 (262)
T 2ekc_A 81 VLELSETLRKE--FPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELK 140 (262)
T ss_dssp HHHHHHHHHHH--CTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHHhh--cCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 45668888764 23789999864321 34567788999999999777776654444
No 168
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=66.33 E-value=48 Score=34.37 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----------CCCcHHHHHHHHHhccCCCC
Q 008761 43 NSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL-----------PMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 43 ~~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~M-----------P~mDGlElLr~Ir~~~~~~~ 108 (554)
...+.+..+-+.. +..|. ...+.++|..+.. . .+|.|++...- .+...++.+..+.+......
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~-~--Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS-V--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT-T--TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh-c--CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 3444444443444 55544 5677877776654 3 58999882210 02224566666665322247
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+|||....-.+...+.+++.+||+.+..
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 8999888888899999999999998865
No 169
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=66.24 E-value=80 Score=30.91 Aligned_cols=99 Identities=8% Similarity=0.048 Sum_probs=59.2
Q ss_pred HHHHHhhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHH
Q 008761 48 VFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (554)
Q Consensus 48 L~~lL~~~g--~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~e 125 (554)
|++.|.... +.++..-...+.++.+... .+|.|++|++=...+--++...++... ....+++|=+...+...+..
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~-~~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVA-PYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHT-TSSSEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHH
Confidence 555554322 2333333344555666554 699999999665555555555555432 23456655555566778888
Q ss_pred HHHcCCCEEEe-CCCCHHHHHHHHH
Q 008761 126 CLRLGAADYLV-KPLRTNELLNLWT 149 (554)
Q Consensus 126 AL~aGA~DyL~-KP~~~eeL~~~L~ 149 (554)
+++.|++..+. |=-+.+++...++
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~ 110 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHH
Confidence 99999987644 3345677555443
No 170
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=65.87 E-value=80 Score=32.71 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=60.8
Q ss_pred cEEEEEeC----CHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CcH
Q 008761 33 VRILLCDN----DSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM------------TKG 93 (554)
Q Consensus 33 irVLIVDD----d~~~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~------------mDG 93 (554)
..++.||- ...+.+.+..+-+.. +..|+ .+.+.++|..++.. ..|.|.+.+. |+ ...
T Consensus 113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p~ 188 (361)
T 3r2g_A 113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVPM 188 (361)
T ss_dssp CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCCH
T ss_pred CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHHH
Confidence 45777763 233333343333322 44444 47889999888765 4899998543 22 223
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
++++..+... .. |||.-..-.+...+.+||.+||+....
T Consensus 189 l~aI~~~~~~---~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 189 LTCIQDCSRA---DR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHTTS---SS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHh---CC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4555554432 22 888888888889999999999988754
No 171
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=65.41 E-value=41 Score=33.03 Aligned_cols=100 Identities=10% Similarity=0.114 Sum_probs=60.6
Q ss_pred HHHHHhhCCCEE--EEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHH
Q 008761 48 VFSLLVKCSYQV--TSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (554)
Q Consensus 48 L~~lL~~~g~eV--~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~ 124 (554)
|++.|......+ +... +..+.++++... .+|.|++|++=-..+.-.+...|+.... ..++++|=....+...+.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~~-~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAKN-AGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHHH-HTCEEEEECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHH
Confidence 455565443333 3333 445566666655 6999999998877776666666654321 233333333334557788
Q ss_pred HHHHcCCCEEEe-CCCCHHHHHHHHHH
Q 008761 125 KCLRLGAADYLV-KPLRTNELLNLWTH 150 (554)
Q Consensus 125 eAL~aGA~DyL~-KP~~~eeL~~~L~~ 150 (554)
.++..|++..+. |--+.+++...+..
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~ 109 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRL 109 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHH
Confidence 999999988754 44456777665543
No 172
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=65.11 E-value=85 Score=31.33 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=61.5
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~-~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
+.++++||.||.--..-...+..+... .+++++ .+. +.+.+.+..... .+-.. .|--++++ .
T Consensus 9 ~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~----~~~~~------~~~~~ll~----~- 73 (354)
T 3q2i_A 9 ITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT----GARGH------ASLTDMLA----Q- 73 (354)
T ss_dssp CCSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH----CCEEE------SCHHHHHH----H-
T ss_pred CCCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc----CCcee------CCHHHHhc----C-
Confidence 344578999999766555556555554 478866 444 444444443332 22121 12223332 1
Q ss_pred CCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
..+-+|+++.... .+.+..|+++|..=++.||+. .++..+.++
T Consensus 74 --~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~ 120 (354)
T 3q2i_A 74 --TDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVK 120 (354)
T ss_dssp --CCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHH
T ss_pred --CCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHH
Confidence 3456666665433 567889999999999999975 455544443
No 173
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=64.90 E-value=46 Score=33.60 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=60.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHH-hhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLL-VKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL-~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
..|+++||.||.--..-+..+..+. ...+++++ .+. +.+.+-+..... .+.+-..+ +--+++ ..
T Consensus 19 ~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~--g~~~~~~~------~~~~ll----~~- 85 (357)
T 3ec7_A 19 FQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY--AIEAKDYN------DYHDLI----ND- 85 (357)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH--TCCCEEES------SHHHHH----HC-
T ss_pred cCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh--CCCCeeeC------CHHHHh----cC-
Confidence 4567899999998776665555555 33478876 444 333333333332 21111111 112232 22
Q ss_pred CCCCceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 105 ~~~~iPIIVLSs~--~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
..+-+|+++.. ...+.+..|+++|..=|+.||+. .++..+.++.
T Consensus 86 --~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~ 133 (357)
T 3ec7_A 86 --KDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEA 133 (357)
T ss_dssp --TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred --CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHH
Confidence 34556666553 33667889999999999999975 4555554443
No 174
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=64.01 E-value=65 Score=28.36 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=67.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHh--hC----CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLV--KC----SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~--~~----g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
.++++|+.+.+.. ..+..++. .. .+.+.-.-+.++..+.+.. .|++|+-.. ...-|+.+++.+.
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama---- 119 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA---- 119 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH----
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH----
Confidence 4677888764432 23334433 21 2334444456667777764 588886333 2334677877775
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 106 ~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
..+|||+.. . ....+.+..|...++. +.+.++|...|..++..
T Consensus 120 -~G~PvI~~~-~---~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 120 -SGKPVIAVN-E---GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp -TTCCEEEES-S---HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred -cCCcEEEeC-C---CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 467887542 2 3445566678889999 99999999999888754
No 175
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=63.91 E-value=24 Score=36.95 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=60.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHH---hcCCCceEEEEecCCCCCcHHHHHHHHHhc
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALN---AEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~---~~~~~PDLILLDi~MP~mDGlElLr~Ir~~ 103 (554)
.|.++||.||.--..-...+..+....+++|+ .+. +.+.+-+... ... .++.-+.+- ...| ++.|-..
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g-~~~~~~~~~--~~~~----~~~ll~~ 89 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNG-KKPAKVFGN--GNDD----YKNMLKD 89 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTT-CCCCEEECS--STTT----HHHHTTC
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcC-CCCCceecc--CCCC----HHHHhcC
Confidence 45679999999766555555544443477776 444 3333333222 111 122222210 0112 2233322
Q ss_pred cCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 104 KELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
..+-+|+++... ..+.+.+||++|..=|+.||+. .++..+.++
T Consensus 90 ---~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~ 136 (444)
T 2ixa_A 90 ---KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVK 136 (444)
T ss_dssp ---TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHH
T ss_pred ---CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHH
Confidence 456677776543 3678899999999999999985 455544443
No 176
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=63.24 E-value=55 Score=32.58 Aligned_cols=105 Identities=9% Similarity=0.103 Sum_probs=57.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHH------HHhh-CCCEEE-EECC-HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 29 DRSKVRILLCDNDSNSSDAVFS------LLVK-CSYQVT-SVRS-PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~------lL~~-~g~eV~-~A~d-g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
.|+++||-||.-=..-+..+.. ++.. .+.+|+ ++.. .+.|-+..+.. ...-+..|+ +.
T Consensus 22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--g~~~~y~d~-----------~e 88 (393)
T 4fb5_A 22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF--GFEKATADW-----------RA 88 (393)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH--TCSEEESCH-----------HH
T ss_pred CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh--CCCeecCCH-----------HH
Confidence 5788999999965443332222 2222 256766 4443 33333333332 222233332 22
Q ss_pred HHhccCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 100 ITRDKELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 100 Ir~~~~~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
|-.. +.+-+|+|+... -.+.+..|+++|-.=|+.||+. .++..+.++
T Consensus 89 ll~~---~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~ 139 (393)
T 4fb5_A 89 LIAD---PEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLA 139 (393)
T ss_dssp HHHC---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred HhcC---CCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhh
Confidence 3232 456677776543 3678999999999999999986 455544443
No 177
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=63.00 E-value=23 Score=33.67 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=35.5
Q ss_pred HHHHHHHHHhccCCCCceEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHH
Q 008761 93 GLKMLKYITRDKELQRIPVIMMSAQDE------VSVVVKCLRLGAADYLVKPLRTNEL 144 (554)
Q Consensus 93 GlElLr~Ir~~~~~~~iPIIVLSs~~d------~e~~~eAL~aGA~DyL~KP~~~eeL 144 (554)
+++++++|++. ..+||++++.... .+.+..++++||+.++.-....++.
T Consensus 68 ~~~~i~~i~~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~ 122 (248)
T 1geq_A 68 AFWIVKEFRRH---SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHA 122 (248)
T ss_dssp HHHHHHHHHTT---CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGH
T ss_pred HHHHHHHHHhh---CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhH
Confidence 47788888864 4679988874332 4677889999999999865555443
No 178
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=62.80 E-value=35 Score=33.98 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=58.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
|.|+++||.||.--..-...+..+....+++++ .+. +.+.+.+..... ...-+. .|--+++ ..
T Consensus 1 M~m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~--~~~~~~-------~~~~~ll----~~-- 65 (330)
T 3e9m_A 1 MSLDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKEL--AIPVAY-------GSYEELC----KD-- 65 (330)
T ss_dssp --CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHT--TCCCCB-------SSHHHHH----HC--
T ss_pred CCCCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHc--CCCcee-------CCHHHHh----cC--
Confidence 346678999999766555555444444577776 333 334444443332 111011 1222232 21
Q ss_pred CCCceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 106 LQRIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 106 ~~~iPIIVLSs~--~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
..+-+|+++.. ...+.+..|+++|..=++.||+. .++..+.++
T Consensus 66 -~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~ 112 (330)
T 3e9m_A 66 -ETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFA 112 (330)
T ss_dssp -TTCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHH
T ss_pred -CCCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHH
Confidence 34556666543 33667889999999999999975 455544433
No 179
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=62.64 E-value=43 Score=29.99 Aligned_cols=81 Identities=20% Similarity=0.170 Sum_probs=45.7
Q ss_pred CcEEEEEeCCHHH--HHHHHHHHhhCCCEEE--EE--C-CHHHHHHH----HHhcCCCceEEEEecCCCCCc--------
Q 008761 32 KVRILLCDNDSNS--SDAVFSLLVKCSYQVT--SV--R-SPRQVIDA----LNAEGSDIDLILAEVDLPMTK-------- 92 (554)
Q Consensus 32 kirVLIVDDd~~~--r~~L~~lL~~~g~eV~--~A--~-dg~EALe~----L~~~~~~PDLILLDi~MP~mD-------- 92 (554)
..|||++.|+-.. ...|.+.|... ..|. .. . .....++. +... +||+|++.+..-+..
T Consensus 20 ~prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~Vvi~~G~ND~~~~~~~~~~ 96 (200)
T 4h08_A 20 LPHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVLKNT--KFDVIHFNNGLHGFDYTEEEYDK 96 (200)
T ss_dssp SCEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHHHHS--CCSEEEECCCSSCTTSCHHHHHH
T ss_pred CCeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHHhcC--CCCeEEEEeeeCCCCCCHHHHHH
Confidence 4699999999654 23455555433 3333 11 1 11222332 2233 799999976555431
Q ss_pred H-HHHHHHHHhccCCCCceEEEEecC
Q 008761 93 G-LKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 93 G-lElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
. -++++.|++.. +..+||+++..
T Consensus 97 ~l~~ii~~l~~~~--p~~~ii~~~~~ 120 (200)
T 4h08_A 97 SFPKLIKIIRKYA--PKAKLIWANTT 120 (200)
T ss_dssp HHHHHHHHHHHHC--TTCEEEEECCC
T ss_pred HHHHHHHHHhhhC--CCccEEEeccC
Confidence 1 24666777654 66788877753
No 180
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=61.86 E-value=36 Score=32.29 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEecCCCCCc---HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 63 RSPRQVIDALNAEGSDID-LILAEVDLPMTK---GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 63 ~dg~EALe~L~~~~~~PD-LILLDi~MP~mD---GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+..+..+.+... ..| |.+.|....+.. -++++++|++. ..+|||+...-.+.+.+.+++.+||+..+.
T Consensus 31 ~d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 31 GDPVEAARAYDEA--GADELVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp TCHHHHHHHHHHH--TCSCEEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHc--CCCEEEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 3566666666554 345 445576543332 24567777653 579999998888899999999999988866
No 181
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=61.33 E-value=20 Score=35.09 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=37.3
Q ss_pred HHHHHHHHHhccCCCCceEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008761 93 GLKMLKYITRDKELQRIPVIMMSAQD------EVSVVVKCLRLGAADYLVKPLRTNELLNLW 148 (554)
Q Consensus 93 GlElLr~Ir~~~~~~~iPIIVLSs~~------d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L 148 (554)
++++++.|++.. ..+||++++-.. ....+..+.++||+.++.-....+++...+
T Consensus 81 ~~~~v~~ir~~~--~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~ 140 (268)
T 1qop_A 81 CFEMLAIIREKH--PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFR 140 (268)
T ss_dssp HHHHHHHHHHHC--SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHH
T ss_pred HHHHHHHHHhcC--CCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHH
Confidence 456788887642 468998886322 245677889999999999877766554444
No 182
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=60.72 E-value=71 Score=30.16 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCCC-c--HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----
Q 008761 66 RQVIDALNAEGSDID-LILAEVDLPMT-K--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV----- 136 (554)
Q Consensus 66 ~EALe~L~~~~~~PD-LILLDi~MP~m-D--GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~----- 136 (554)
.+.++.+... ..+ +++.+..-.++ . .++++++|++. ..+|||...+-...+.+.++++.||+.++.
T Consensus 155 ~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~ 229 (252)
T 1ka9_F 155 VEWAVKGVEL--GAGEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFH 229 (252)
T ss_dssp HHHHHHHHHH--TCCEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHc--CCCEEEEecccCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444 356 44455532221 2 38999999875 478999988888888888999999999864
Q ss_pred -CCCCHHHHHHH
Q 008761 137 -KPLRTNELLNL 147 (554)
Q Consensus 137 -KP~~~eeL~~~ 147 (554)
.|++..+++..
T Consensus 230 ~~~~~~~~~~~~ 241 (252)
T 1ka9_F 230 FGEIPIPKLKRY 241 (252)
T ss_dssp TTSSCHHHHHHH
T ss_pred cCCCCHHHHHHH
Confidence 34566665544
No 183
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=60.72 E-value=31 Score=33.13 Aligned_cols=68 Identities=15% Similarity=0.251 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCceEEEE-ecCCCC-Cc--HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 65 PRQVIDALNAEGSDIDLILA-EVDLPM-TK--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILL-Di~MP~-mD--GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
..+..+.+... ..+.|++ ++.-.+ .. .++++++|++. ..+|||...+-.+.+.+.++++.||+.++.=
T Consensus 158 ~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTTCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 45555555554 4666665 433111 12 38899999875 5789999988888888999999999998653
No 184
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=60.31 E-value=21 Score=34.93 Aligned_cols=93 Identities=9% Similarity=0.056 Sum_probs=58.3
Q ss_pred HHHHHhhCCC-EEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHH
Q 008761 48 VFSLLVKCSY-QVTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (554)
Q Consensus 48 L~~lL~~~g~-eV~~A~dg~EALe~L~~~-~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~e 125 (554)
+...|...+. -|+...+.++++++++.. .....+|=+ .+-.-++++++++|++.. +. .+|-...--+.+.+..
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEv--t~~t~~a~e~I~~l~~~~--~~-~~iGaGTVlt~~~a~~ 101 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEI--TFRSDAAVEAIRLLRQAQ--PE-MLIGAGTILNGEQALA 101 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEE--ETTSTTHHHHHHHHHHHC--TT-CEEEEECCCSHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEE--eCCCCCHHHHHHHHHHhC--CC-CEEeECCcCCHHHHHH
Confidence 4455555564 466677777777766542 114554444 444567899999998753 33 3444444566889999
Q ss_pred HHHcCCCEEEeCCCCHHHHHH
Q 008761 126 CLRLGAADYLVKPLRTNELLN 146 (554)
Q Consensus 126 AL~aGA~DyL~KP~~~eeL~~ 146 (554)
|+++||+-. .-|-...++..
T Consensus 102 Ai~AGA~fI-vsP~~~~~vi~ 121 (232)
T 4e38_A 102 AKEAGATFV-VSPGFNPNTVR 121 (232)
T ss_dssp HHHHTCSEE-ECSSCCHHHHH
T ss_pred HHHcCCCEE-EeCCCCHHHHH
Confidence 999999655 45654444443
No 185
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=59.90 E-value=8.1 Score=38.69 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=49.4
Q ss_pred CCcEEEEEeC-----CHHHHHHHHHHHhhCC-CEEEEECCHH-----HHHHHHHhcCCCceEEEEecCCCCCc--HHHHH
Q 008761 31 SKVRILLCDN-----DSNSSDAVFSLLVKCS-YQVTSVRSPR-----QVIDALNAEGSDIDLILAEVDLPMTK--GLKML 97 (554)
Q Consensus 31 skirVLIVDD-----d~~~r~~L~~lL~~~g-~eV~~A~dg~-----EALe~L~~~~~~PDLILLDi~MP~mD--GlElL 97 (554)
++++||||.. -+.....|..+|++.| |+|.++.+.. +.+. ... ..+|+||++..+...+ ..+.+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~--~~L-~~~D~vV~~~~~~~l~~~~~~~l 79 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV--LDF-SPYQLVVLDYNGDSWPEETNRRF 79 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC--CCC-TTCSEEEECCCSSCCCHHHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh--hhh-hcCCEEEEeCCCCcCCHHHHHHH
Confidence 5789999986 3667788999999888 9998776531 2221 111 2699999988654443 22333
Q ss_pred HHHHhccCCCCceEEEEe
Q 008761 98 KYITRDKELQRIPVIMMS 115 (554)
Q Consensus 98 r~Ir~~~~~~~iPIIVLS 115 (554)
....+ ....+|++=
T Consensus 80 ~~yV~----~Ggglv~~H 93 (281)
T 4e5v_A 80 LEYVQ----NGGGVVIYH 93 (281)
T ss_dssp HHHHH----TTCEEEEEG
T ss_pred HHHHH----cCCCEEEEe
Confidence 22222 345777664
No 186
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=59.79 E-value=74 Score=31.99 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=59.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
|.|+++||.||.--..-+......|... +++|+ .+. +.+. +.+. .+.+-..+ |- +.+-..
T Consensus 1 M~m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~----~~~~--~~~~~~~~------~~----~~ll~~- 63 (358)
T 3gdo_A 1 MSLDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE----VKRD--FPDAEVVH------EL----EEITND- 63 (358)
T ss_dssp -CTTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH----HHHH--CTTSEEES------ST----HHHHTC-
T ss_pred CCCCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH----HHhh--CCCCceEC------CH----HHHhcC-
Confidence 3456799999998665554455566554 67876 333 3332 2222 12221211 11 222222
Q ss_pred CCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
..+-+|+++.... .+.+..|+++|..=|+.||+. .++..+.++.
T Consensus 64 --~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~ 111 (358)
T 3gdo_A 64 --PAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRA 111 (358)
T ss_dssp --TTCCEEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred --CCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHH
Confidence 4566777765433 678899999999999999975 4555544443
No 187
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=59.49 E-value=96 Score=30.08 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=58.4
Q ss_pred HHHHHhhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHH
Q 008761 48 VFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (554)
Q Consensus 48 L~~lL~~~g--~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~e 125 (554)
|++.|.... +.++..-+..+.++.+... .+|.|++|++=...+--++...++.. .....+++|=+...+...+..
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~p~~~~~a~~~~~~~-~~~~~~~~VRv~~~~~~~i~~ 86 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMAL-KGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHT-TTCSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHH-HhCCCcEEEECCCCCHHHHHH
Confidence 555555432 2333333445555665544 69999999965533333444444443 224566666666667778888
Q ss_pred HHHcCCCEEE-eCCCCHHHHHHHH
Q 008761 126 CLRLGAADYL-VKPLRTNELLNLW 148 (554)
Q Consensus 126 AL~aGA~DyL-~KP~~~eeL~~~L 148 (554)
+++.|++.++ +|--+.+++...+
T Consensus 87 ~l~~g~~gI~~P~V~s~~ev~~~~ 110 (256)
T 1dxe_A 87 LLDIGFYNFLIPFVETKEEAELAV 110 (256)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHH
T ss_pred HHhcCCceeeecCcCCHHHHHHHH
Confidence 9999998864 4444567775443
No 188
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=59.37 E-value=83 Score=31.10 Aligned_cols=107 Identities=19% Similarity=0.129 Sum_probs=71.9
Q ss_pred CCcEEEEEeCCHH-HHHHHHHHHhhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 31 SKVRILLCDNDSN-SSDAVFSLLVKCSYQVT-SVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 31 skirVLIVDDd~~-~r~~L~~lL~~~g~eV~-~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
..++++|+.+.+. ....|..+....+ .++ ... +.++..+.+. ..|++++-... +.-|+.+++.+.
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~----~adv~v~ps~~-e~~~~~~~EAma----- 352 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC----- 352 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECBSC-CSSCHHHHHHHH-----
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH----HCCEEEeCCCC-CCccHHHHHHHH-----
Confidence 3678888887653 3366777777777 444 333 5566666664 36888876544 445677887775
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
..+|||. |... ...+.+..| .+++..|.+.++|.+.|..++.
T Consensus 353 ~G~Pvi~-s~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 353 LGAIPIA-SAVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp TTCEEEE-ESST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCCeEE-cCCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 4678875 3332 233455566 8999999999999999998877
No 189
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=59.08 E-value=32 Score=34.21 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=54.8
Q ss_pred CCEEEEECCH--------HHHHHHH----HhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHH
Q 008761 56 SYQVTSVRSP--------RQVIDAL----NAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV 123 (554)
Q Consensus 56 g~eV~~A~dg--------~EALe~L----~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~ 123 (554)
+++|.++.+| +++...+ ++. .||+||.=---|...|-...+++... ..+|.|++|.-.... .
T Consensus 32 dI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~--~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K-~ 105 (283)
T 1qv9_A 32 DVEFRVVGTSVKMDPECVEAAVEMALDIAEDF--EPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLK-V 105 (283)
T ss_dssp SEEEEEEECTTCCSHHHHHHHHHHHHHHHHHH--CCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGG-G
T ss_pred CceEEEeccCCCCCHHHHHHHHHHhhhhhhhc--CCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchh-h
Confidence 5666666543 3444443 444 89999998777888898888888764 689999999755444 4
Q ss_pred HHHHHcCCCEEEeCC
Q 008761 124 VKCLRLGAADYLVKP 138 (554)
Q Consensus 124 ~eAL~aGA~DyL~KP 138 (554)
.++|+..-.+||.-+
T Consensus 106 kd~l~~~g~GYIivk 120 (283)
T 1qv9_A 106 KDEMEEQGLGYILVK 120 (283)
T ss_dssp HHHHHHTTCEEEEET
T ss_pred HHHHHhcCCcEEEEe
Confidence 578888788886544
No 190
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=58.76 E-value=22 Score=35.34 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=56.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
|.|+++||.||.--..-...+..+....+++++ .+. +.+.+.+..... ...-+.- +- +.+-..
T Consensus 1 M~m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~--~~~~~~~-------~~----~~ll~~-- 65 (329)
T 3evn_A 1 MSLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKY--HLPKAYD-------KL----EDMLAD-- 65 (329)
T ss_dssp ----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CC--CCSCEES-------CH----HHHHTC--
T ss_pred CCCCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHc--CCCcccC-------CH----HHHhcC--
Confidence 346789999999876555555555444567666 333 332232222211 1110111 21 222222
Q ss_pred CCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 106 LQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 106 ~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
..+-+|+++... ..+.+..|+++|..=|+.||+. .++..+.++
T Consensus 66 -~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~ 112 (329)
T 3evn_A 66 -ESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFA 112 (329)
T ss_dssp -TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHH
T ss_pred -CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHH
Confidence 345667666543 3667889999999999999975 455544443
No 191
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=58.35 E-value=31 Score=32.74 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=52.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEecCCCCCc------------
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEVDLPMTK------------ 92 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-------dg~EALe~L~~~~~~PDLILLDi~MP~mD------------ 92 (554)
+++|||..-...+...|...|.+.|++|.... +.+...+.+... .+|+||--......+
T Consensus 5 ~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~--~~d~vi~~a~~~~~~~~~~~~~~~~~~ 82 (287)
T 3sc6_A 5 KERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEI--RPHIIIHCAAYTKVDQAEKERDLAYVI 82 (287)
T ss_dssp CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHH--CCSEEEECCCCCCHHHHTTCHHHHHHH
T ss_pred eeEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhc--CCCEEEECCcccChHHHhcCHHHHHHH
Confidence 35899999999999999999988899988653 444444555443 589988644333211
Q ss_pred ----HHHHHHHHHhccCCCCceEEEEec
Q 008761 93 ----GLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 93 ----GlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
...+++.++.. .+++|++|+
T Consensus 83 n~~~~~~l~~~~~~~----~~~~v~~SS 106 (287)
T 3sc6_A 83 NAIGARNVAVASQLV----GAKLVYIST 106 (287)
T ss_dssp HTHHHHHHHHHHHHH----TCEEEEEEE
T ss_pred HHHHHHHHHHHHHHc----CCeEEEEch
Confidence 13355555543 347888886
No 192
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=58.15 E-value=68 Score=32.83 Aligned_cols=107 Identities=10% Similarity=0.043 Sum_probs=70.5
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 32 KVRILLCDNDS-NSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 32 kirVLIVDDd~-~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.++++||.+.+ ..+..|..+....+-.|. ... +.++..+.+.. .|++++--.. ..-|+.+++.+. ..
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma-----~G 389 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALR-----YG 389 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHH-----HT
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHH-----CC
Confidence 57888888765 356777777766553343 222 44444466653 5888875442 344667777765 35
Q ss_pred ceEEEEecCCCHHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLG---------AADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aG---------A~DyL~KP~~~eeL~~~L~~ll 152 (554)
+|||+. .. .-..+.+..| ..+++..|.+.++|.+.|..++
T Consensus 390 ~PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 390 CIPVVA-RT---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp CEEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred CCEEEe-CC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 788753 22 2344556666 7889999999999999998887
No 193
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=58.11 E-value=88 Score=33.55 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=66.5
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhC-CCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCcH
Q 008761 32 KVRILLCD----NDSNSSDAVFSLLVKC-SYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTKG 93 (554)
Q Consensus 32 kirVLIVD----Dd~~~r~~L~~lL~~~-g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----------~mDG 93 (554)
...+++|| +.....+.++.+-+.. +..| ..+.+.++|..++.. ..|.|++...-. +...
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g~Gs~~~tr~~~g~g~p~ 319 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQ 319 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSSCCTTBCHHHHHCCCCCH
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCCCCcCcccccccCCCccH
Confidence 35677776 4455556666666554 3333 357788888887765 489998753211 1234
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
++++..+........+|||.-.+-.....+.+|+.+||+..+.
T Consensus 320 ~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 320 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 5555555542211368999877888889999999999998865
No 194
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=57.64 E-value=66 Score=27.56 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=47.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhc--CCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAE--GSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~--~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
|..++|.||.| +..... +.-.|+++..+.+.+++.+.++.. ...+.||++.-.+-.. --+.+.+++.. .
T Consensus 1 m~~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~---~ 71 (109)
T 2d00_A 1 MVPVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRG---R 71 (109)
T ss_dssp CCCCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTC---C
T ss_pred CCccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhC---C
Confidence 45678999998 444332 234578888888887776555431 1268899998776552 23455666532 3
Q ss_pred CceEEEEe
Q 008761 108 RIPVIMMS 115 (554)
Q Consensus 108 ~iPIIVLS 115 (554)
..|+|+.-
T Consensus 72 ~~P~Il~I 79 (109)
T 2d00_A 72 DLPVLLPI 79 (109)
T ss_dssp CCCEEEEE
T ss_pred CCeEEEEE
Confidence 46776554
No 195
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=57.41 E-value=39 Score=35.31 Aligned_cols=110 Identities=12% Similarity=0.107 Sum_probs=57.1
Q ss_pred CcCCCCCcEEEEEeC----CHHHHHHHHHHHhh-CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHH
Q 008761 26 GFIDRSKVRILLCDN----DSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLK 98 (554)
Q Consensus 26 ~~~~mskirVLIVDD----d~~~r~~L~~lL~~-~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr 98 (554)
+.|.|.++||.||.- -..-...+..+... .+++++ .+. +.+.+.+...... -+++-..+ | ++
T Consensus 14 ~~m~m~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g-~~~~~~~~------~----~~ 82 (438)
T 3btv_A 14 TVPNAAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLK-LSNATAFP------T----LE 82 (438)
T ss_dssp -----CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT-CTTCEEES------S----HH
T ss_pred cccccCCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC-CCcceeeC------C----HH
Confidence 335556799999997 22223334444444 467765 444 3433433333321 12111111 1 12
Q ss_pred HHHhccCCCCceEEEEecCC--CHHHHHHHHHcC------CCEEEeCCCC--HHHHHHHHH
Q 008761 99 YITRDKELQRIPVIMMSAQD--EVSVVVKCLRLG------AADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~--d~e~~~eAL~aG------A~DyL~KP~~--~eeL~~~L~ 149 (554)
.+... ..+-+|+++... ..+.+..|+++| -.=|+.||+. .++..+.++
T Consensus 83 ~ll~~---~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~ 140 (438)
T 3btv_A 83 SFASS---STIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYK 140 (438)
T ss_dssp HHHHC---SSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHH
T ss_pred HHhcC---CCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHH
Confidence 23222 356677776543 356788999999 8889999986 455444433
No 196
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=57.18 E-value=73 Score=29.59 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhcCCCceEEEE-ecCCCCC---cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDIDLILA-EVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILL-Di~MP~m---DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+.++.+... ..|.|++ .+...+. -.++.+++|++. ..+|||+..+-...+.+.+++++||+.++.
T Consensus 155 ~~~e~~~~~~~~--G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 155 DAVKWAKEVEEL--GAGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp EHHHHHHHHHHH--TCSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEecccCCCCcCcCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 344545555544 4777765 4432221 146788888875 478999888877778888999999999864
No 197
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=57.01 E-value=49 Score=31.31 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=51.0
Q ss_pred HHHhhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEecCCCCC-------cHHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 50 SLLVKCSYQVT-SV--RSPRQVIDALNAEGSDIDLILAEVDLPMT-------KGLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 50 ~lL~~~g~eV~-~A--~dg~EALe~L~~~~~~PDLILLDi~MP~m-------DGlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
+.+...|..+. .+ .+..+.++.+.......|.|+++-..|+. .+++.++++++.. ..+||++.-+-..
T Consensus 107 ~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~--~~~pi~v~GGI~~ 184 (228)
T 1h1y_A 107 QSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--PSLDIEVDGGLGP 184 (228)
T ss_dssp HHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTSEEEEESSCST
T ss_pred HHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc--CCCCEEEECCcCH
Confidence 33444565554 33 23344555444300037999998777752 3467777777653 3678776665433
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008761 120 VSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 120 ~e~~~eAL~aGA~DyL~K 137 (554)
+.+.+++++||+.++.=
T Consensus 185 -~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 185 -STIDVAASAGANCIVAG 201 (228)
T ss_dssp -TTHHHHHHHTCCEEEES
T ss_pred -HHHHHHHHcCCCEEEEC
Confidence 56777888899998653
No 198
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=56.96 E-value=40 Score=32.78 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=66.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
.++++|+.+.+. ..+..++...+. .|......++..+.+.. .|++++-... ..-|..+++.+. ..+
T Consensus 228 ~~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a-----~G~ 295 (374)
T 2iw1_A 228 NTLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT-----AGL 295 (374)
T ss_dssp TEEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH-----HTC
T ss_pred ceEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH-----CCC
Confidence 457788876542 445555554442 34444444455555543 4787775432 344677777775 356
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVK-PLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~K-P~~~eeL~~~L~~llr~ 154 (554)
|||+....... +.+..|..+++.. |.+.++|.+.+..++..
T Consensus 296 Pvi~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 296 PVLTTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp CEEEETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred CEEEecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 88764432222 3445567889887 89999999999988764
No 199
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=56.61 E-value=1.3e+02 Score=29.89 Aligned_cols=105 Identities=10% Similarity=0.117 Sum_probs=60.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhh--CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVK--CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~--~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
...++||.||.--..+.......|.. .+++++ .+. +.+.+.+..... ...-+.-| ++.+-..
T Consensus 15 ~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~--~~~~~~~~-----------~~~ll~~- 80 (340)
T 1zh8_A 15 PLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV--GNPAVFDS-----------YEELLES- 80 (340)
T ss_dssp -CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH--SSCEEESC-----------HHHHHHS-
T ss_pred CCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh--CCCcccCC-----------HHHHhcC-
Confidence 34578999999774444444444544 357765 444 444444444332 11112222 2222222
Q ss_pred CCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 105 ~~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
+.+-+|+++... -.+.+..|+++|..=|+.||+. .++..+.++
T Consensus 81 --~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 127 (340)
T 1zh8_A 81 --GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVE 127 (340)
T ss_dssp --SCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHH
T ss_pred --CCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 356667666543 3678899999999999999984 455554443
No 200
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=56.52 E-value=23 Score=34.44 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCCcEEEEEeCC--------------------HHHHHHHHHHHhhCCCEEEEECCHH-----------------HHHHHH
Q 008761 30 RSKVRILLCDND--------------------SNSSDAVFSLLVKCSYQVTSVRSPR-----------------QVIDAL 72 (554)
Q Consensus 30 mskirVLIVDDd--------------------~~~r~~L~~lL~~~g~eV~~A~dg~-----------------EALe~L 72 (554)
|+++|||+|-.. ......|.+.|.+.|++|..+.... ...+.+
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWL 80 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHH
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHH
Confidence 456899999887 2344557777778899988655321 455566
Q ss_pred HhcCCCceEEEEecCCC
Q 008761 73 NAEGSDIDLILAEVDLP 89 (554)
Q Consensus 73 ~~~~~~PDLILLDi~MP 89 (554)
+.. +||||.+-...+
T Consensus 81 ~~~--~~Dvi~~~~~~~ 95 (342)
T 2iuy_A 81 RTA--DVDVVHDHSGGV 95 (342)
T ss_dssp HHC--CCSEEEECSSSS
T ss_pred Hhc--CCCEEEECCchh
Confidence 655 799988865443
No 201
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=56.50 E-value=22 Score=34.37 Aligned_cols=85 Identities=8% Similarity=0.132 Sum_probs=52.4
Q ss_pred HHHHHHhhCCCEEE--EEC-CHHHHHHHHHhcCCCceEEEEecCCCC---------CcHHHHHHHHHhccCCCCceEEEE
Q 008761 47 AVFSLLVKCSYQVT--SVR-SPRQVIDALNAEGSDIDLILAEVDLPM---------TKGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 47 ~L~~lL~~~g~eV~--~A~-dg~EALe~L~~~~~~PDLILLDi~MP~---------mDGlElLr~Ir~~~~~~~iPIIVL 114 (554)
.+...+.+.|+.++ .+. +..+.++.+... ..++|.+.- .++ ...+++++++++. ..+||++-
T Consensus 134 ~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~--~~g~v~~~s-~~G~tG~~~~~~~~~~~~i~~v~~~---~~~pI~vg 207 (262)
T 1rd5_A 134 SLWSEAKNNNLELVLLTTPAIPEDRMKEITKA--SEGFVYLVS-VNGVTGPRANVNPRVESLIQEVKKV---TNKPVAVG 207 (262)
T ss_dssp HHHHHHHHTTCEECEEECTTSCHHHHHHHHHH--CCSCEEEEC-SSCCBCTTSCBCTHHHHHHHHHHHH---CSSCEEEE
T ss_pred HHHHHHHHcCCceEEEECCCCCHHHHHHHHhc--CCCeEEEec-CCCCCCCCcCCCchHHHHHHHHHhh---cCCeEEEE
Confidence 34445556676533 222 334454554443 234444432 222 1245688888865 47899988
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeC
Q 008761 115 SAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 115 Ss~~d~e~~~eAL~aGA~DyL~K 137 (554)
.+-.+.+.+.+++.+||+.++.=
T Consensus 208 GGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 208 FGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCcCCHHHHHHHHHcCCCEEEEC
Confidence 88777899999999999999764
No 202
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=56.11 E-value=77 Score=33.86 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecC--------------CCCCcHHHHHHHHHhccCC
Q 008761 44 SSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVD--------------LPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 44 ~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~--------------MP~mDGlElLr~Ir~~~~~ 106 (554)
..+.+..+-+.. ++-|. .+.+.++|..+... ..|.|.+... +|....+.++..+...
T Consensus 283 ~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~--- 356 (514)
T 1jcn_A 283 QIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR--- 356 (514)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG---
T ss_pred HHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh---
Confidence 344455554444 45444 46788888777655 3788877432 1223346677777654
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCC
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPL 139 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~Dy-L~KP~ 139 (554)
..+|||...+-.+...+.+|+.+||+.. +-.++
T Consensus 357 ~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 357 FGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 4689998888888899999999999887 44554
No 203
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=55.98 E-value=28 Score=35.33 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=56.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE----------EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ----------VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e----------V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
.++++||-+.+.-...|.+++...|.. |.......+...++. .-|++++--..-+.-|..+++.+.
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~----~aDv~vl~ss~~e~gg~~~lEAmA 300 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP----VGKIAIVGGTFVNIGGHNLLEPTC 300 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG----GEEEEEECSSSSSSCCCCCHHHHT
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH----hCCEEEECCcccCCCCcCHHHHHH
Confidence 356666666654434555555555432 222221233333332 247766522111112344555543
Q ss_pred hccCCCCceEEEEecCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVVVKC-LRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~~eA-L~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
..+|||.-+...+...+.+. ...| ++..+-+.++|.+.+..++..
T Consensus 301 -----~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 301 -----WGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -----TTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred -----hCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 56898842222333333333 3455 455567889999998888764
No 204
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=55.89 E-value=1.4e+02 Score=29.64 Aligned_cols=102 Identities=10% Similarity=0.188 Sum_probs=58.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHH-hhCCCEEE-EEC-CHHHHHHHHHhcCCCc-eEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLL-VKCSYQVT-SVR-SPRQVIDALNAEGSDI-DLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL-~~~g~eV~-~A~-dg~EALe~L~~~~~~P-DLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
++||.||.--..-...+..+. ...+++++ .+. +.+.+.+..... .+ .-+.-| --+++ .. .
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~--g~~~~~~~~-------~~~ll----~~---~ 65 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY--QLNATVYPN-------DDSLL----AD---E 65 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT--TCCCEEESS-------HHHHH----HC---T
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh--CCCCeeeCC-------HHHHh----cC---C
Confidence 579999998665555555555 23477766 444 344444443332 22 122222 12222 22 3
Q ss_pred CceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 108 RIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 108 ~iPIIVLSs~--~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
.+-+|+++.. ...+.+..|+++|..=++.||+. .++..+.++
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~ 111 (344)
T 3mz0_A 66 NVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVE 111 (344)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHH
Confidence 4566666654 33667889999999999999975 455554443
No 205
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=55.88 E-value=35 Score=33.91 Aligned_cols=103 Identities=13% Similarity=0.143 Sum_probs=54.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
|+++||.||.--..-...+...|...+++++ .+. +.+.+.+..... +.+ +..+. .+.+-.. +
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~---~~~-------~~~~~---~~~ll~~---~ 65 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLF---PSV-------PFAAS---AEQLITD---A 65 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHS---TTC-------CBCSC---HHHHHTC---T
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhc---CCC-------cccCC---HHHHhhC---C
Confidence 5678999998643322223334445678865 444 333333333222 110 01111 1222222 4
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHH
Q 008761 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLW 148 (554)
Q Consensus 108 ~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L 148 (554)
.+-+|+++... ..+.+..|+++|..=|+.||+. .++..+.+
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~ 110 (336)
T 2p2s_A 66 SIDLIACAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQ 110 (336)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHH
T ss_pred CCCEEEEeCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHH
Confidence 56677776543 3668889999999999999975 35544433
No 206
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=55.69 E-value=1.7e+02 Score=29.36 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=65.1
Q ss_pred cEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCC------------c-
Q 008761 33 VRILLCD----NDSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMT------------K- 92 (554)
Q Consensus 33 irVLIVD----Dd~~~r~~L~~lL~~~-g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~MP~m------------D- 92 (554)
..++.++ +.....+.+..+-+.. +.-|. ...+.++|..++.. ..|.|++..+ ++. .
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g 196 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGG 196 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCch
Confidence 3444454 4455556666665554 34333 36788888887765 4898888432 211 1
Q ss_pred -HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 93 -GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 93 -GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
-++++.++... ..+|||.-..-.+...+.+|+.+||+....
T Consensus 197 ~~~~~l~~v~~~---~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 197 WQLAALRWCAKA---ASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp CHHHHHHHHHHT---CSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 36777777764 479999888888888999999999998743
No 207
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=55.61 E-value=1.3e+02 Score=29.82 Aligned_cols=102 Identities=9% Similarity=0.135 Sum_probs=57.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
++||.||.--..-...+..+....+++++ .+. +.+.+.+..... ...-+.-| --+++ .. ..+
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~--~~~~~~~~-------~~~ll----~~---~~~ 65 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKL--GVEKAYKD-------PHELI----ED---PNV 65 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHH--TCSEEESS-------HHHHH----HC---TTC
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHh--CCCceeCC-------HHHHh----cC---CCC
Confidence 57999999765544444444343467766 444 444444444333 22222222 12222 22 345
Q ss_pred eEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 110 PVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 110 PIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
-+|+++.... .+.+..|+++|..=++.||+. .++..+.++
T Consensus 66 D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~ 109 (344)
T 3ezy_A 66 DAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIE 109 (344)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHH
T ss_pred CEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 6676665433 567889999999999999964 455544443
No 208
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=55.58 E-value=72 Score=31.91 Aligned_cols=109 Identities=13% Similarity=0.232 Sum_probs=66.5
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 32 KVRILLCDND---SNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 32 kirVLIVDDd---~~~r~~L~~lL~~~g~--eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
.++++|+.+. ......|..++...+. .|.... +.++..+.+.. .|++++-.. .+.-|+.+++.+.
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--- 347 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--- 347 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH---
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH---
Confidence 4677777761 1234556666665442 243333 44666666654 477776443 2334677777765
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
..+|||+. .... ..+.+..|..+++..|.+.++|.+.|..++..
T Consensus 348 --~G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 348 --SGTPVIAA-RVGG---LPIAVAEGETGLLVDGHSPHAWADALATLLDD 391 (438)
T ss_dssp --TTCCEEEE-SCTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC
T ss_pred --cCCCEEec-CCCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC
Confidence 46787753 3332 33455667889999999999999999888763
No 209
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=55.54 E-value=81 Score=32.20 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=62.2
Q ss_pred CCCcEEEEEeCCH---HHHHHHHHHHhhCCCEEEE-E-C-CHHHHHHHHHhcCCCce-EEEEecCCCCCcHHHHHHHHHh
Q 008761 30 RSKVRILLCDNDS---NSSDAVFSLLVKCSYQVTS-V-R-SPRQVIDALNAEGSDID-LILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 30 mskirVLIVDDd~---~~r~~L~~lL~~~g~eV~~-A-~-dg~EALe~L~~~~~~PD-LILLDi~MP~mDGlElLr~Ir~ 102 (554)
|+++||.||.--. .-...+..+....+++++. + . +.+.+.+...... -+. -+. .|--++++.-..
T Consensus 10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g-~~~~~~~-------~~~~~ll~~~~~ 81 (398)
T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLG-VDSERCY-------ADYLSMFEQEAR 81 (398)
T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTT-CCGGGBC-------SSHHHHHHHHTT
T ss_pred cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhC-CCcceee-------CCHHHHHhcccc
Confidence 5689999999775 3344444443344577663 3 3 4555555544331 110 111 133345443211
Q ss_pred ccCCCCceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~--~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
.. +.+-+|+|+.. ...+.+..|+++|-.=|+.||+. .++..+.++.
T Consensus 82 ~~--~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 131 (398)
T 3dty_A 82 RA--DGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLREL 131 (398)
T ss_dssp CT--TCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHH
T ss_pred cC--CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHH
Confidence 11 34566666554 33678999999999999999985 4555554443
No 210
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=55.54 E-value=1.2e+02 Score=29.46 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~ 145 (554)
.+..+.+. ..|++++.- |.-+++.+. ..+|||+....... .+.+..| ..++..+ +.++|.
T Consensus 274 ~~~~~~~~----~ad~~v~~s------g~~~lEA~a-----~G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la 333 (375)
T 3beo_A 274 IDFHNVAA----RSYLMLTDS------GGVQEEAPS-----LGVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIF 333 (375)
T ss_dssp HHHHHHHH----TCSEEEECC------HHHHHHHHH-----HTCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHH
T ss_pred HHHHHHHH----hCcEEEECC------CChHHHHHh-----cCCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHH
Confidence 34555544 357777643 544656554 45798865221222 2346678 8888876 899999
Q ss_pred HHHHHHHHHH
Q 008761 146 NLWTHMWRRR 155 (554)
Q Consensus 146 ~~L~~llr~~ 155 (554)
+.+..++...
T Consensus 334 ~~i~~ll~~~ 343 (375)
T 3beo_A 334 SLADELLSDK 343 (375)
T ss_dssp HHHHHHHHCH
T ss_pred HHHHHHHhCh
Confidence 9999887643
No 211
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=55.52 E-value=71 Score=27.39 Aligned_cols=94 Identities=7% Similarity=0.098 Sum_probs=46.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...|+++|.++...+.+. ..|+.+.... .-.+.++.+... ..|+|++-+.-+. .-..++..++... +.++
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~~~~-~n~~~~~~a~~~~--~~~~ 100 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHLE--CAKWLILTIPNGY-EAGEIVASARAKN--PDIE 100 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTGG--GCSEEEECCSCHH-HHHHHHHHHHHHC--SSSE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCcc--cCCEEEEECCChH-HHHHHHHHHHHHC--CCCe
Confidence 345666666665443332 2455544322 122333332222 4677776433211 1233444555443 5566
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
||+... +.+......++||+..+.
T Consensus 101 iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 101 IIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 665554 344555666788887664
No 212
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=55.25 E-value=63 Score=32.60 Aligned_cols=71 Identities=13% Similarity=0.284 Sum_probs=48.5
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecC-------------------------CC--C--------CcHHHHHHHHHhcc
Q 008761 60 TSVRSPRQVIDALNAEGSDIDLILAEVD-------------------------LP--M--------TKGLKMLKYITRDK 104 (554)
Q Consensus 60 ~~A~dg~EALe~L~~~~~~PDLILLDi~-------------------------MP--~--------mDGlElLr~Ir~~~ 104 (554)
..+.+..||+..+.. .+|+|.+... |+ + ...++++++|...
T Consensus 130 v~v~~~~Ea~~a~~~---Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~- 205 (297)
T 4adt_A 130 CGCTNLGEALRRISE---GASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL- 205 (297)
T ss_dssp EEESSHHHHHHHHHH---TCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH-
T ss_pred EEeCCHHHHHHHHhC---CCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh-
Confidence 367788888777765 3777777633 11 0 1236778888765
Q ss_pred CCCCceEEEE--ecCCCHHHHHHHHHcCCCEEEe
Q 008761 105 ELQRIPVIMM--SAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 105 ~~~~iPIIVL--Ss~~d~e~~~eAL~aGA~DyL~ 136 (554)
.++|||++ ++-...+.+.+++.+||+.++.
T Consensus 206 --~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 206 --KRLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp --TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred --cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 45788753 3445788999999999999975
No 213
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=55.22 E-value=55 Score=32.01 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=31.7
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
++++++|++. ..+|||....-.+.+.+.+++.+||+...
T Consensus 230 ~~~i~~i~~~---~~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 230 LKLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp HHHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 4777888764 47899988787888999999999998873
No 214
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=55.21 E-value=95 Score=30.95 Aligned_cols=101 Identities=10% Similarity=0.125 Sum_probs=58.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
+++||.||.--..-+ .+...|... +++++ .+. +.+.+.+..... .... -.|--+++ .. .
T Consensus 4 ~~~~vgiiG~G~~g~-~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~--g~~~--------~~~~~~~l----~~---~ 65 (354)
T 3db2_A 4 NPVGVAAIGLGRWAY-VMADAYTKSEKLKLVTCYSRTEDKREKFGKRY--NCAG--------DATMEALL----AR---E 65 (354)
T ss_dssp CCEEEEEECCSHHHH-HHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH--TCCC--------CSSHHHHH----HC---S
T ss_pred CcceEEEEccCHHHH-HHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc--CCCC--------cCCHHHHh----cC---C
Confidence 468999999766444 455555554 78866 444 444444443332 1110 11222232 22 3
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 108 ~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
.+-+|+++... ..+.+..|+++|..=|+.||+. .++..+.++
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~ 111 (354)
T 3db2_A 66 DVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQ 111 (354)
T ss_dssp SCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHH
Confidence 45666666543 3667889999999999999975 455554443
No 215
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=54.93 E-value=62 Score=32.16 Aligned_cols=97 Identities=9% Similarity=0.062 Sum_probs=53.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhh-------CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVK-------CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~-------~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
.|+++||-||.--..-+..+..+... .+.+|+ ++. +.+.+-+..... ...-+..|+ +.
T Consensus 3 ~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~--g~~~~~~d~-----------~~ 69 (390)
T 4h3v_A 3 AMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKL--GWSTTETDW-----------RT 69 (390)
T ss_dssp -CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHH--TCSEEESCH-----------HH
T ss_pred CCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHc--CCCcccCCH-----------HH
Confidence 47789999998433222222222211 123555 444 444454444433 222233332 33
Q ss_pred HHhccCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCCH
Q 008761 100 ITRDKELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLRT 141 (554)
Q Consensus 100 Ir~~~~~~~iPIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~~ 141 (554)
|-.. +.+-+|+|+.... .+.+..|+++|-.=|+.||+..
T Consensus 70 ll~~---~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~ 110 (390)
T 4h3v_A 70 LLER---DDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLAN 110 (390)
T ss_dssp HTTC---TTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCS
T ss_pred HhcC---CCCCEEEEeCChHHHHHHHHHHHHcCCCceeecCccc
Confidence 3332 4566777765433 6789999999999999999863
No 216
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=54.78 E-value=1.1e+02 Score=31.68 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=60.5
Q ss_pred CCCcEEEEEeCCH---HHHHHHHHHHhhCCCEEEE-E-C-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhc
Q 008761 30 RSKVRILLCDNDS---NSSDAVFSLLVKCSYQVTS-V-R-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (554)
Q Consensus 30 mskirVLIVDDd~---~~r~~L~~lL~~~g~eV~~-A-~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~ 103 (554)
|+++||.||.--. .-...+..+....+++++. + . +.+.+.+..+......+-+. .|--++++.-...
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~-------~~~~~ll~~~~~~ 107 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVY-------SDFKEMAIREAKL 107 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBC-------SCHHHHHHHHHHC
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCccccc-------CCHHHHHhccccc
Confidence 5689999999775 3333344333333577653 3 3 45555544443311100111 1333454432211
Q ss_pred cCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 104 KELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
. +.+-+|+|+... -.+.+..|+++|-.=|+.||+. .++..+.++
T Consensus 108 ~--~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 155 (417)
T 3v5n_A 108 K--NGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKK 155 (417)
T ss_dssp T--TCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHH
T ss_pred C--CCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHH
Confidence 1 345666665543 3678999999999999999975 455554443
No 217
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.67 E-value=48 Score=29.68 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=37.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh--CCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVK--CSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~--~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
..+||+||-|+.. .+...+.. .++.+..+.. ....+.+......+|+||+|.- |.. +......+..
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~-~~~-~~~~~~~l~~ 97 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGA-GSL-SVITSAAVMV 97 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECC-SSS-SHHHHHHHHH
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECC-CCC-CHHHHHHHHH
Confidence 5689999988643 34455543 3466766554 3333333333336999999973 233 3333444443
No 218
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=54.19 E-value=1.2e+02 Score=29.68 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=55.8
Q ss_pred cEEEEE-eCCHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 33 VRILLC-DNDSNSSDAVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 33 irVLIV-DDd~~~r~~L~~lL~~~g~eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
++++++ .+.+..+..|.+++.... .|.... ...+..+++. ..|++++.- .|+ +++.+. ..+
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~----~ad~~v~~S-----~g~-~lEA~a-----~G~ 294 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMR----ASLLLVTDS-----GGL-QEEGAA-----LGV 294 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHH----TEEEEEESC-----HHH-HHHHHH-----TTC
T ss_pred eEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHH----hCcEEEECC-----cCH-HHHHHH-----cCC
Confidence 566664 555545555655543221 243331 2234444443 357777642 355 445443 568
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|+|+.....+.... .+.| ..++.. .+.++|...+..++..
T Consensus 295 PvI~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~d 334 (376)
T 1v4v_A 295 PVVVLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLEN 334 (376)
T ss_dssp CEEECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHTC
T ss_pred CEEeccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHhC
Confidence 99876443333322 3455 467763 4889999999888753
No 219
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=53.93 E-value=81 Score=30.91 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=53.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHh-hCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLV-KCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~-~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
|.|++++|.||.--..-+..+...|. ..+++++ .+. +.+.+-+..... ... ..+.++. |.
T Consensus 1 m~m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~--g~~---------~~~~~~~---l~--- 63 (319)
T 1tlt_A 1 MSLKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW--RIP---------YADSLSS---LA--- 63 (319)
T ss_dssp ----CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH--TCC---------BCSSHHH---HH---
T ss_pred CCCCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc--CCC---------ccCcHHH---hh---
Confidence 34667899999975544442444444 3467766 444 332232222222 111 1122333 21
Q ss_pred CCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHH
Q 008761 105 ELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLN 146 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~ 146 (554)
..+-+|+++.... .+.+..|+++|..=++.||+. .++..+
T Consensus 64 --~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~ 107 (319)
T 1tlt_A 64 --ASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAER 107 (319)
T ss_dssp --TTCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHH
T ss_pred --cCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHH
Confidence 2356676766544 567888999999889999975 444443
No 220
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=53.26 E-value=65 Score=32.95 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=67.5
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 32 KVRILLCDNDS-NSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 32 kirVLIVDDd~-~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.++++||.+.+ .....|..+....+-.|. ... +.++..+.+.. .|++++--. ...-|+.+++.+. ..
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma-----~G 390 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK-----YG 390 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH-----HT
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH-----CC
Confidence 56777777654 356667776666543332 222 33333455543 477776443 2344667777765 35
Q ss_pred ceEEEEecCCCHHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLG---------AADYLVKPLRTNELLNLWTHMW 152 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aG---------A~DyL~KP~~~eeL~~~L~~ll 152 (554)
+|||+. .. .-..+.+..| ..+++..|.+.++|...|..++
T Consensus 391 ~PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 391 TLPLVR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp CEEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred CCEEEC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 788754 22 2344556666 7899999999999999998887
No 221
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=53.08 E-value=19 Score=33.20 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCC--CcHHHHHHHHHhccCCCCceEEE--EecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 63 RSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIM--MSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 63 ~dg~EALe~L~~~~~~PDLILLDi~MP~--mDGlElLr~Ir~~~~~~~iPIIV--LSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
.+.+++++.++.. ...+-++++.++- .+|.++++.|++.. +..||++ .........+..+.++||+.+...+
T Consensus 10 ~~~~~~~~~~~~~--~~~v~~iev~~~~~~~~g~~~i~~l~~~~--~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~ 85 (207)
T 3ajx_A 10 LSTEAALELAGKV--AEYVDIIELGTPLIKAEGLSVITAVKKAH--PDKIVFADMKTMDAGELEADIAFKAGADLVTVLG 85 (207)
T ss_dssp SCHHHHHHHHHHH--GGGCSEEEECHHHHHHHCTHHHHHHHHHS--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEET
T ss_pred CCHHHHHHHHHHh--hccCCEEEECcHHHHhhCHHHHHHHHHhC--CCCeEEEEEEecCccHHHHHHHHhCCCCEEEEec
Confidence 3567777777654 2222346665542 36788899998752 3678774 4332123347789999999988777
Q ss_pred CCH
Q 008761 139 LRT 141 (554)
Q Consensus 139 ~~~ 141 (554)
...
T Consensus 86 ~~~ 88 (207)
T 3ajx_A 86 SAD 88 (207)
T ss_dssp TSC
T ss_pred cCC
Confidence 655
No 222
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=52.72 E-value=87 Score=33.22 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=58.3
Q ss_pred CCCcEEEEEeC----CHHHHHHHHHHHhh-CCCEEE-EEC-CHHHHHHHHHhcCCCce-EEEEecCCCCCcHHHHHHHHH
Q 008761 30 RSKVRILLCDN----DSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDID-LILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 30 mskirVLIVDD----d~~~r~~L~~lL~~-~g~eV~-~A~-dg~EALe~L~~~~~~PD-LILLDi~MP~mDGlElLr~Ir 101 (554)
|.++||.||.- -..-...+..+... .+++|+ ++. +.+.+.+...... -+. .+.-| ++.|.
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g-~~~~~~~~d-----------~~ell 104 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ-LKHATGFDS-----------LESFA 104 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT-CTTCEEESC-----------HHHHH
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC-CCcceeeCC-----------HHHHh
Confidence 56799999997 33333344444443 477765 444 4444444443321 111 12222 12232
Q ss_pred hccCCCCceEEEEecCCC--HHHHHHHHHcC------CCEEEeCCCC--HHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDE--VSVVVKCLRLG------AADYLVKPLR--TNELLNLW 148 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d--~e~~~eAL~aG------A~DyL~KP~~--~eeL~~~L 148 (554)
.. ..+-+|+++.... .+.+..|+++| -.=|+.||+. .++..+.+
T Consensus 105 ~~---~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~ 158 (479)
T 2nvw_A 105 QY---KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELY 158 (479)
T ss_dssp HC---TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHH
T ss_pred cC---CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHH
Confidence 22 4566777765433 56788999999 7788999975 45544433
No 223
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=52.52 E-value=1.5e+02 Score=29.77 Aligned_cols=88 Identities=15% Similarity=-0.005 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCCCE--EEEE---CCHHHHHHHHHhcCCCceEEEEecC---------------------CCCCcHHHHHH
Q 008761 45 SDAVFSLLVKCSYQ--VTSV---RSPRQVIDALNAEGSDIDLILAEVD---------------------LPMTKGLKMLK 98 (554)
Q Consensus 45 r~~L~~lL~~~g~e--V~~A---~dg~EALe~L~~~~~~PDLILLDi~---------------------MP~mDGlElLr 98 (554)
.+.+..+-+..+.- |..+ .+.++|...... ..|.|++..+ .-+....+.+.
T Consensus 167 ~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~ 243 (349)
T 1p0k_A 167 LKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLA 243 (349)
T ss_dssp HHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHH
Confidence 34455444444433 3233 466776655544 4788888521 12356677888
Q ss_pred HHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
.+.+.. ..+|||...+-.+.+.+.+++.+||+.++.=
T Consensus 244 ~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 244 EIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 887642 4799999999899999999999999998543
No 224
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=52.35 E-value=65 Score=31.43 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
.+++++|++. ..+||++=.+-.+.+.+.+++.+||+.++.=
T Consensus 194 ~~~i~~lr~~---~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEY---HAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHT---TCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhc---cCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5788888875 4678766445556888889899999999864
No 225
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=52.09 E-value=22 Score=35.92 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=47.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCC-CCcHHHHHHHHHh
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITR 102 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mDGlElLr~Ir~ 102 (554)
-++.+||-++.....|++.+....-..+...|+..++..+.....++|||++|---- ..+.-++++.|.+
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 589999999999999988886643223356788888887644323589999996332 2244445555543
No 226
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=51.56 E-value=1.7e+02 Score=28.79 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=57.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
+++||.||.--..-...+..+....+++++ .+. +.+.+.+..... .+. +.-| ++.+... ..
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--g~~-~~~~-----------~~~~l~~---~~ 65 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN--GAE-AVAS-----------PDEVFAR---DD 65 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT--TCE-EESS-----------HHHHTTC---SC
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc--CCc-eeCC-----------HHHHhcC---CC
Confidence 368999999765555444444444477776 444 344444333322 211 1111 1223221 34
Q ss_pred ceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHH
Q 008761 109 IPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLW 148 (554)
Q Consensus 109 iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L 148 (554)
+-+|+++... ..+.+..|+++|..=++.||+. .++..+.+
T Consensus 66 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~ 109 (344)
T 3euw_A 66 IDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACK 109 (344)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHH
T ss_pred CCEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHH
Confidence 5667666543 3667889999999999999975 35544433
No 227
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=51.21 E-value=64 Score=32.57 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCceEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 107 QRIPVIMMSA--QDEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 107 ~~iPIIVLSs--~~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
+.+-+|+++. ....+.+..|+++|..=|+.||+. .++..+.++
T Consensus 82 ~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~ 128 (383)
T 3oqb_A 82 KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVK 128 (383)
T ss_dssp SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHH
Confidence 3456666654 345778999999999999999985 455554444
No 228
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=50.65 E-value=22 Score=35.40 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=38.4
Q ss_pred cHHHHHHHHHhccCCCCceEEEEec------CCCHHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 008761 92 KGLKMLKYITRDKELQRIPVIMMSA------QDEVSVVVKCLRLGAADYLVKPLRTNELLN 146 (554)
Q Consensus 92 DGlElLr~Ir~~~~~~~iPIIVLSs------~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~ 146 (554)
+.+++++++++.. ..+|||+|+- +.-...+.+|.++|++.+|.-.+..++...
T Consensus 83 ~~~~~v~~~r~~~--~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~ 141 (271)
T 3nav_A 83 ICFELIAQIRARN--PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQP 141 (271)
T ss_dssp HHHHHHHHHHHHC--TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHH
T ss_pred HHHHHHHHHHhcC--CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 3467788887642 5789999983 233557888999999999997677666433
No 229
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=50.60 E-value=51 Score=31.54 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhcCCCceEEE-EecCCCCC---cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 64 SPRQVIDALNAEGSDIDLIL-AEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLIL-LDi~MP~m---DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
+..+..+.+.+. ..|.|. .|....+. .-++++++|++. ..+|||+...-.+.+.+.+++..||+..+.=
T Consensus 31 ~~~~~a~~~~~~--Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHH--TCSEEEEEETTTSSCSSCCCHHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHC--CCCEEEEEecCcccCCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 455655555554 355444 56543321 127888888864 5789999877777788889999999998764
No 230
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=49.66 E-value=67 Score=27.43 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=68.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
..++++|+.+.+. ...+..++...+..|.. .-+.++..+.+. ..|++++-.. ...-|+.+++.+. ..+
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~Eama-----~G~ 99 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILK----TCTLYVHAAN-VESEAIACLEAIS-----VGI 99 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHT----TCSEEEECCC-SCCCCHHHHHHHH-----TTC
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHH----hCCEEEECCc-ccCccHHHHHHHh-----cCC
Confidence 3678999987654 46677777776765554 223456666654 4698887544 3444677887775 465
Q ss_pred -eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 -PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 -PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|||..+...... +.+..|. ++..|.+.++|...|..++...
T Consensus 100 vPvi~~~~~~~~~---~~~~~~~--~~~~~~~~~~l~~~i~~l~~~~ 141 (166)
T 3qhp_A 100 VPVIANSPLSATR---QFALDER--SLFEPNNAKDLSAKIDWWLENK 141 (166)
T ss_dssp CEEEECCTTCGGG---GGCSSGG--GEECTTCHHHHHHHHHHHHHCH
T ss_pred CcEEeeCCCCchh---hhccCCc--eEEcCCCHHHHHHHHHHHHhCH
Confidence 888633222211 1122222 3778889999999998887643
No 231
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=49.35 E-value=92 Score=31.43 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=50.4
Q ss_pred hCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCC--CCcH----------HHHHHHH----HhccCCCCceEEEEe-
Q 008761 54 KCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLP--MTKG----------LKMLKYI----TRDKELQRIPVIMMS- 115 (554)
Q Consensus 54 ~~g~-eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP--~mDG----------lElLr~I----r~~~~~~~iPIIVLS- 115 (554)
+.|+ .+.++.+.++|.++... .||+|++..-+- +.-| .+.++.+ ++.. +++.|+.-.
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vn--pdvivLc~gG 235 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIR--DDIIILSHGG 235 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHC--SCCEEEEEST
T ss_pred HCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhC--CCcEEEecCC
Confidence 4565 45689999999999876 599999866532 2222 3333333 3322 444333323
Q ss_pred cCCCHHHHHHHHHc--CCCEEEeCC
Q 008761 116 AQDEVSVVVKCLRL--GAADYLVKP 138 (554)
Q Consensus 116 s~~d~e~~~eAL~a--GA~DyL~KP 138 (554)
.-...+.+..++++ |++.|+.-.
T Consensus 236 pIstpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 236 PIANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp TCCSHHHHHHHHHHCTTCCEEEESH
T ss_pred CCCCHHHHHHHHhcCCCccEEEeeh
Confidence 23568889999999 999999753
No 232
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=49.29 E-value=54 Score=31.23 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=44.1
Q ss_pred CcEEEEEeC---CHHHHHH---HHHHHhhCCCEEEEEC-----CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHH
Q 008761 32 KVRILLCDN---DSNSSDA---VFSLLVKCSYQVTSVR-----SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKML 97 (554)
Q Consensus 32 kirVLIVDD---d~~~r~~---L~~lL~~~g~eV~~A~-----dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElL 97 (554)
+.+|.||-. ++.+... +...++..||++..+. +.. +.++.+... ++|.||+--.-+. .-.+.+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiii~~~~~~-~~~~~~ 79 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALAT--YPSGIATTIPSDT-AFSKSL 79 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHT--CCSEEEECCCCSS-TTHHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHc--CCCEEEEeCCCHH-HHHHHH
Confidence 455555432 4444433 4455556799887544 333 455555555 7998887432211 114566
Q ss_pred HHHHhccCCCCceEEEEec
Q 008761 98 KYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 98 r~Ir~~~~~~~iPIIVLSs 116 (554)
++++. ..+|||++..
T Consensus 80 ~~~~~----~giPvV~~~~ 94 (297)
T 3rot_A 80 QRANK----LNIPVIAVDT 94 (297)
T ss_dssp HHHHH----HTCCEEEESC
T ss_pred HHHHH----CCCCEEEEcC
Confidence 77765 3689998864
No 233
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=49.26 E-value=38 Score=33.58 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhc-CCCceEEEEecCCC--CCc--------------------HHHHHHHHHhccCCCCceEEEEecC---
Q 008761 64 SPRQVIDALNAE-GSDIDLILAEVDLP--MTK--------------------GLKMLKYITRDKELQRIPVIMMSAQ--- 117 (554)
Q Consensus 64 dg~EALe~L~~~-~~~PDLILLDi~MP--~mD--------------------GlElLr~Ir~~~~~~~iPIIVLSs~--- 117 (554)
+.+..++.++.. .. .|+|.+++-.. -.| .++++++|++. ..+|||+++-.
T Consensus 28 ~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~---~~~Pii~m~y~n~v 103 (271)
T 1ujp_A 28 SREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL---TEKPLFLMTYLNPV 103 (271)
T ss_dssp CHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CCSCEEEECCHHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecCcHH
Confidence 445555555432 23 78888876332 122 35778888864 57899998632
Q ss_pred ---CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008761 118 ---DEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (554)
Q Consensus 118 ---~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~ 149 (554)
.....+..+.++|++.+|.-.+..+++...+.
T Consensus 104 ~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~ 138 (271)
T 1ujp_A 104 LAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVR 138 (271)
T ss_dssp HHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHH
T ss_pred HHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHH
Confidence 22445777899999999987676655544443
No 234
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=49.18 E-value=69 Score=25.67 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=53.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g-~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+.+|+|+.- -.+...+...|...| ++|..+..-.+.++.+... ...++.+|+.- .+.+..+.. ..-
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~~-----~~~~~~~~~-----~~d 71 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAKD-----EAGLAKALG-----GFD 71 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTTC-----HHHHHHHTT-----TCS
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCCC-----HHHHHHHHc-----CCC
Confidence 468999998 777888888888888 8887555444444555433 45666666542 233333322 334
Q ss_pred EEEEecC--CCHHHHHHHHHcCCCEE
Q 008761 111 VIMMSAQ--DEVSVVVKCLRLGAADY 134 (554)
Q Consensus 111 IIVLSs~--~d~e~~~eAL~aGA~Dy 134 (554)
+|+.+.. ........+.+.|+.-|
T Consensus 72 ~vi~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 72 AVISAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EEEECCCchhhHHHHHHHHHhCCCEE
Confidence 5555542 22345556677776544
No 235
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=49.18 E-value=1.2e+02 Score=30.65 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=57.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~-~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
++||.||.--..+.......|.. .+++++ .+. +.+.+.+..... ... +.- |--++++ . +.
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--g~~-~~~-------~~~ell~----~---~~ 64 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY--GIP-VFA-------TLAEMMQ----H---VQ 64 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH--TCC-EES-------SHHHHHH----H---SC
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc--CCC-eEC-------CHHHHHc----C---CC
Confidence 67899998773444444444444 467776 444 444444443332 111 111 2223332 2 34
Q ss_pred ceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 109 IPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 109 iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
+-+|+++... ..+.+..|+++|..=|+.||+. .++..+.++
T Consensus 65 vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~ 109 (387)
T 3moi_A 65 MDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIE 109 (387)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHH
Confidence 5666666543 3567889999999999999975 455544443
No 236
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=48.58 E-value=65 Score=31.05 Aligned_cols=85 Identities=11% Similarity=-0.053 Sum_probs=52.4
Q ss_pred cEEEEE-eCCHH---HHHHHHHHHhhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 33 VRILLC-DNDSN---SSDAVFSLLVKCSYQVT---SV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 33 irVLIV-DDd~~---~r~~L~~lL~~~g~eV~---~A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
-+|.|| +|+.. ..+.+.+.|...|++|. .. .+....+..+... .||+|++.. .+.....+++.++
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~--~~dav~~~~--~~~~a~~~~~~~~ 211 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAA--NPDAILVGA--SGTAAALPQTTLR 211 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHH--CCSEEEEEC--CHHHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhc--CCCEEEEec--CcchHHHHHHHHH
Confidence 355555 44443 33445666777787654 22 2456677777665 799999854 2345677888888
Q ss_pred hccCCCCceEEEEecCCCHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVV 123 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~ 123 (554)
+.. ..+|+|.+....+....
T Consensus 212 ~~g--~~~p~i~~~g~~~~~~~ 231 (362)
T 3snr_A 212 ERG--YNGLIYQTHGAASMDFI 231 (362)
T ss_dssp HTT--CCSEEEECGGGCSHHHH
T ss_pred HcC--CCccEEeccCcCcHHHH
Confidence 765 46788655566665443
No 237
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=48.39 E-value=1.4e+02 Score=31.54 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhC-CCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCcHHHHHHHHHhccCCCCc
Q 008761 44 SSDAVFSLLVKC-SYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 44 ~r~~L~~lL~~~-g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----------~mDGlElLr~Ir~~~~~~~i 109 (554)
..+.+..+-+.. ++.| ....+.++|..+... ..|.|.+...-. +...++++..+........+
T Consensus 265 ~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~i 341 (494)
T 1vrd_A 265 VIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDV 341 (494)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCC
Confidence 444455444444 3433 356677888666543 488888744210 12345555555443222478
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
|||.-..-.+...+.+++.+||+....
T Consensus 342 pvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 342 PIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 999888888999999999999988754
No 238
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=48.38 E-value=46 Score=31.66 Aligned_cols=99 Identities=9% Similarity=0.065 Sum_probs=63.3
Q ss_pred HHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC----C-CCcHHHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 48 VFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL----P-MTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 48 L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~M----P-~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
....|+..|+.+. -+..+...+..+... +||.|=+|-.+ . ......+++.|........+.| +..+-++.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~l--~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~v-iaeGVEt~ 220 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTRL--PFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV-VAEGVENA 220 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHHS--CCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEE-EECCCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHhC--CCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeE-EEEeCCCH
Confidence 4455667788766 456777888888877 89999999632 1 2223345555544322234443 45566777
Q ss_pred HHHHHHHHcCCCEE----EeCCCCHHHHHHHHH
Q 008761 121 SVVVKCLRLGAADY----LVKPLRTNELLNLWT 149 (554)
Q Consensus 121 e~~~eAL~aGA~Dy----L~KP~~~eeL~~~L~ 149 (554)
+....+.++|++-+ +.||...+++...+.
T Consensus 221 ~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~ 253 (259)
T 3s83_A 221 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLN 253 (259)
T ss_dssp HHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHH
T ss_pred HHHHHHHhcCCCEeecCcccCCCCHHHHHHHHH
Confidence 77778888998653 779999998876554
No 239
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=47.90 E-value=53 Score=35.28 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCc-HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 65 PRQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILLDi~MP~mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+.+..++. . .+|+|.+|...+... -++++++|++.. +.+||++ ..-...+.+..+.++||+.++.
T Consensus 233 ~~~a~~l~~-a--G~d~I~id~a~g~~~~~~~~i~~ir~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE-A--GVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH-T--TCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh-c--cCceEEeccccccchHHHHHHHHHHHHC--CCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 344444443 3 599999999877654 368899998753 5778876 3345667888999999998875
No 240
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=47.85 E-value=88 Score=29.31 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=56.2
Q ss_pred HHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEE---EEecCCCC-----CcHHHHHHHHHhccCCCCceEEEE
Q 008761 45 SDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLI---LAEVDLPM-----TKGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 45 r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLI---LLDi~MP~-----mDGlElLr~Ir~~~~~~~iPIIVL 114 (554)
.+.+..+-+.. +..|. .+.+.+++...+.. ..|+| +..+ .|+ ...++++++++.. .+||++.
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~-~~~~~~~~~~~~~~i~~~~~~----~ipvia~ 192 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGY-TPYSRQEAGPDVALIEALCKA----GIAVIAE 192 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTS-STTSCCSSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeecccc-CCCCcCCCCCCHHHHHHHHhC----CCCEEEE
Confidence 34444433332 45554 66788888777654 47888 2322 121 1246888888752 6899988
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe
Q 008761 115 SAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 115 Ss~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+-.+.+.+.+++++||+.++.
T Consensus 193 GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 193 GKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp SCCCSHHHHHHHHTTCCSEEEE
T ss_pred CCCCCHHHHHHHHHCCCCEEEE
Confidence 8888799999999999999865
No 241
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=47.45 E-value=1.1e+02 Score=29.70 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=49.2
Q ss_pred EEEEE-eCCHHH---HHHHHHHHhhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 34 RILLC-DNDSNS---SDAVFSLLVKCSYQVT---SV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 34 rVLIV-DDd~~~---r~~L~~lL~~~g~eV~---~A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
+|.|| +|+..- .+.+.+.|...|.+|. .. .+....+..++.. .||+|++... +.+...+++.+++
T Consensus 141 ~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~~--~~~a~~~~~~~~~ 216 (368)
T 4eyg_A 141 KVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDA--KPDAMFVFVP--AGQGGNFMKQFAE 216 (368)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHH--CCSEEEEECC--TTCHHHHHHHHHH
T ss_pred EEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhc--CCCEEEEecc--chHHHHHHHHHHH
Confidence 45444 444433 3456667777887654 12 3566777777766 7999998543 4478889999887
Q ss_pred ccCCCC-ceEEEEe
Q 008761 103 DKELQR-IPVIMMS 115 (554)
Q Consensus 103 ~~~~~~-iPIIVLS 115 (554)
...... +||+...
T Consensus 217 ~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 217 RGLDKSGIKVIGPG 230 (368)
T ss_dssp TTGGGTTCEEEEET
T ss_pred cCCCcCCceEEecC
Confidence 653222 6665544
No 242
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=47.41 E-value=2.2e+02 Score=28.19 Aligned_cols=88 Identities=8% Similarity=0.045 Sum_probs=58.6
Q ss_pred HHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEec---CCCCCcHHHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 45 SDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV---DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi---~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
...|..+-...|.+|. .+.+.+|.-..+.. .+++|=+.- .--..| ++...+|...- ...+.+|.-|+-...
T Consensus 142 l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vd-l~~t~~L~~~i-p~~~~~VsESGI~t~ 216 (258)
T 4a29_A 142 LESLLEYARSYGMEPLILINDENDLDIALRI---GARFIGIMSRDFETGEIN-KENQRKLISMI-PSNVVKVAKLGISER 216 (258)
T ss_dssp HHHHHHHHHHTTCCCEEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBC-HHHHHHHHTTS-CTTSEEEEEESSCCH
T ss_pred HHHHHHHHHHHhHHHHHhcchHHHHHHHhcC---CCcEEEEeCCCccccccC-HHHHHHHHhhC-CCCCEEEEcCCCCCH
Confidence 3445555567788754 89999998777764 478775532 222333 44455554432 134556666788889
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008761 121 SVVVKCLRLGAADYLVK 137 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~K 137 (554)
+.+.+...+|++.||.-
T Consensus 217 ~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 217 NEIEELRKLGVNAFLIS 233 (258)
T ss_dssp HHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHCCCCEEEEC
Confidence 99999999999999874
No 243
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=47.39 E-value=52 Score=28.14 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=18.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVT 60 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~ 60 (554)
+||||..+......+..+++..||.|.
T Consensus 53 kiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 577777777777777677766676654
No 244
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=47.37 E-value=92 Score=30.47 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=57.2
Q ss_pred CcEEEEE-eCCHHHHHHHHHHHhhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 32 KVRILLC-DNDSNSSDAVFSLLVKCSYQVTSV--RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 32 kirVLIV-DDd~~~r~~L~~lL~~~g~eV~~A--~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
.++++|+ .+.+..++.+.+++...+ .|... -...+..+.+.. .|++++.- .|. +++.+. ..
T Consensus 238 ~~~l~i~~g~~~~~~~~l~~~~~~~~-~v~~~g~~~~~~~~~~~~~----ad~~v~~S-----g~~-~lEA~a-----~G 301 (384)
T 1vgv_A 238 DIQIVYPVHLNPNVREPVNRILGHVK-NVILIDPQEYLPFVWLMNH----AWLILTDS-----GGI-QEEAPS-----LG 301 (384)
T ss_dssp TEEEEEECCBCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHH----CSEEEESS-----STG-GGTGGG-----GT
T ss_pred CeEEEEEcCCCHHHHHHHHHHhhcCC-CEEEeCCCCHHHHHHHHHh----CcEEEECC-----cch-HHHHHH-----cC
Confidence 3556654 444445555665554322 23332 123455555543 47777643 222 333322 56
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
+|||+.-...... +.++.| ..++..| +.++|.+.+..++...
T Consensus 302 ~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~d~ 343 (384)
T 1vgv_A 302 KPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLKDE 343 (384)
T ss_dssp CCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHHCH
T ss_pred CCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHhCh
Confidence 8988664323322 235568 8898877 8999999999887643
No 245
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=47.37 E-value=72 Score=30.14 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCCceEEE-EecCCCCC-c--HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 65 PRQVIDALNAEGSDIDLIL-AEVDLPMT-K--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLIL-LDi~MP~m-D--GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..+.++.+... .++.|+ .++.-.++ . .++++++|++. ..+|||...+-...+.+.++++.||+.++.
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALA 223 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHH
Confidence 45555555544 467444 55542221 2 38899999864 478999888888888899999999999864
No 246
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=46.97 E-value=1.4e+02 Score=29.43 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=58.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC---CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC---SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~---g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
++||.||.--..-+..+ ..|... +++++ .+. +.+.+.+..... ...-+.- |--++ -..
T Consensus 2 ~~rigiiG~G~ig~~~~-~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~--~~~~~~~-------~~~~l----l~~--- 64 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFT-AVLQTLPRSEHQVVAVAARDLSRAKEFAQKH--DIPKAYG-------SYEEL----AKD--- 64 (334)
T ss_dssp CEEEEEECCSHHHHHHH-HHHTTSCTTTEEEEEEECSSHHHHHHHHHHH--TCSCEES-------SHHHH----HHC---
T ss_pred ccEEEEECchHHHHHHH-HHHHhCCCCCeEEEEEEcCCHHHHHHHHHHc--CCCcccC-------CHHHH----hcC---
Confidence 57999999766555544 444433 35655 333 455555554433 1111221 11223 222
Q ss_pred CCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 107 QRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 107 ~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
..+-+|+++... ..+.+.+|+++|-.=++.||+. .++..+.++.
T Consensus 65 ~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~ 112 (334)
T 3ohs_X 65 PNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTE 112 (334)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHH
Confidence 456677776543 3667889999999999999984 4565554443
No 247
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=46.86 E-value=51 Score=32.20 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=64.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC------CCCcHHHHHHHHHhc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL------PMTKGLKMLKYITRD 103 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~M------P~mDGlElLr~Ir~~ 103 (554)
.++++|+.+.+. ...+..++....-.|. -.-+.++..+.+.. .|++++-... +..-|+.+++.+.
T Consensus 229 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-- 301 (394)
T 3okp_A 229 DAQLLIVGSGRY-ESTLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-- 301 (394)
T ss_dssp TCEEEEECCCTT-HHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--
T ss_pred CeEEEEEcCchH-HHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--
Confidence 467777766543 3344444422211232 33344666666653 4777774443 1444677777765
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 104 ~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
..+|||+ |.... ..+.+..| .+++..|.+.++|.+.|..++..
T Consensus 302 ---~G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 302 ---CGVPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp ---TTCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHHTC
T ss_pred ---cCCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHHhC
Confidence 4578875 33322 22344567 89999999999999999888753
No 248
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=46.30 E-value=78 Score=29.64 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHHHHhhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 46 DAVFSLLVKCSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~d---g---~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
..+.+.+.+.||.+..+.. . .+.++.+... .+|-||+-...+ .+.++.+.. ..+|||++...
T Consensus 27 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~----~~~~~~l~~----~~iPvV~i~~~ 94 (276)
T 3jy6_A 27 KGISSILESRGYIGVLFDANADIEREKTLLRAIGSR--GFDGLILQSFSN----PQTVQEILH----QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTT--TCSEEEEESSCC----HHHHHHHHT----TSSCEEEESCC
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecCCc----HHHHHHHHH----CCCCEEEEecc
Confidence 3344556677998774432 2 2355555554 789888864433 567777764 46899988653
No 249
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=46.05 E-value=52 Score=34.42 Aligned_cols=96 Identities=13% Similarity=0.269 Sum_probs=56.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
.+.|+|||.++...+.+. ..|+.|+... +-.+.|+.+... ..|+||+-+.-+ ..-+.++..++... +.++
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~agi~--~A~~viv~~~~~-~~n~~i~~~ar~~~--p~~~ 97 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGAA--KAEVLINAIDDP-QTNLQLTEMVKEHF--PHLQ 97 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTTTT--TCSEEEECCSSH-HHHHHHHHHHHHHC--TTCE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcCCC--ccCEEEECCCCh-HHHHHHHHHHHHhC--CCCe
Confidence 456777887776554433 3465544322 123344444323 678888765321 22345666666654 6677
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
||+.+. +........++||+..+.-.
T Consensus 98 Iiara~--~~~~~~~L~~~Gad~Vi~~~ 123 (413)
T 3l9w_A 98 IIARAR--DVDHYIRLRQAGVEKPERET 123 (413)
T ss_dssp EEEEES--SHHHHHHHHHTTCSSCEETT
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEECcc
Confidence 776665 44566777899999887644
No 250
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=45.95 E-value=51 Score=31.66 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=38.4
Q ss_pred CceEEEEecCCCCCcH-------HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 78 DIDLILAEVDLPMTKG-------LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 78 ~PDLILLDi~MP~mDG-------lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+|.|++...-|+..| ++-+++|++.. ..++|. +.+--+.+.+.++.++||+-++.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~--~~~~I~-VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF--PSLDIE-VDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC--TTCEEE-EESSCSTTTHHHHHHHTCCEEEE
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc--CCCCEE-EeCCcCHHHHHHHHHcCCCEEEE
Confidence 3788887666677655 45566776643 345554 45444567888999999999865
No 251
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=45.91 E-value=2.2e+02 Score=27.92 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=56.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHH-hhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLL-VKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL-~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
+.+++|.||.--..-+..+..+. ...+++++ .+..-.+..+.+... ...+.+.-| - +.+-.. .
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~-~g~~~~~~~-------~----~~~l~~---~ 70 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYTN-------Y----KDMIDT---E 70 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT-TCCSEEESC-------H----HHHHTT---S
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-hCCCcccCC-------H----HHHhcC---C
Confidence 35789999997655444444444 33477765 444333334333332 122222222 1 222221 3
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHH
Q 008761 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLN 146 (554)
Q Consensus 108 ~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~ 146 (554)
.+-+|+++... ..+.+..|++.|..=++.||+. .++..+
T Consensus 71 ~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~ 113 (346)
T 3cea_A 71 NIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDE 113 (346)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHH
T ss_pred CCCEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHH
Confidence 45666666543 3567889999999888999975 444433
No 252
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=45.83 E-value=1.6e+02 Score=30.47 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=56.6
Q ss_pred HHHHHHHHhhCCCEEE--EE---CCHHHHHHHHHhcCCCceEEEEecCCC---------------------CCcHHHHHH
Q 008761 45 SDAVFSLLVKCSYQVT--SV---RSPRQVIDALNAEGSDIDLILAEVDLP---------------------MTKGLKMLK 98 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~--~A---~dg~EALe~L~~~~~~PDLILLDi~MP---------------------~mDGlElLr 98 (554)
.+.|+.+-+..+.-|. .+ .+.++|..+... .+|.|+++-. . +....+++.
T Consensus 195 ~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~ 270 (365)
T 3sr7_A 195 KKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVLL 270 (365)
T ss_dssp HHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHHHH
Confidence 3455555554443333 34 577777777654 4899987543 1 223345666
Q ss_pred HHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 99 ~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.++... ..+|||.-..-.+...+.+||.+||+.+..
T Consensus 271 ~v~~~~--~~ipvia~GGI~~g~Dv~KaLalGAdaV~i 306 (365)
T 3sr7_A 271 NAQPLM--DKVEILASGGIRHPLDIIKALVLGAKAVGL 306 (365)
T ss_dssp HHGGGT--TTSEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHhc--CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 665432 468998888888899999999999999854
No 253
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=45.81 E-value=30 Score=32.91 Aligned_cols=62 Identities=21% Similarity=0.208 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+.+++.+... +||+| . -||+.-- ++++++++. ..+|||+=.--.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~--~PD~i--E-iLPGi~p-~iI~~i~~~---~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKV--QPDCI--E-LLPGIIP-EQVQKMTQK---LHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHH--CCSEE--E-EECTTCH-HHHHHHHHH---HCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhc--CCCEE--E-ECCchhH-HHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 4577777776 79987 2 3577543 788888875 578987655567889999999999988754
No 254
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=45.60 E-value=1.1e+02 Score=28.68 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=55.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-Cc-HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE---
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPM-TK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL--- 135 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~MP~-mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL--- 135 (554)
-+.+..|+.+.+.. ..|.|-+ .|. .- |++.++.|+... +++||+.+.+- +.+.+.+.+.+||+.+.
T Consensus 110 G~~t~~e~~~A~~~---Gad~v~~---fpa~~~gG~~~lk~l~~~~--~~ipvvaiGGI-~~~n~~~~l~aGa~~vavgS 180 (207)
T 2yw3_A 110 GVLTPTEVERALAL---GLSALKF---FPAEPFQGVRVLRAYAEVF--PEVRFLPTGGI-KEEHLPHYAALPNLLAVGGS 180 (207)
T ss_dssp EECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHHHC--TTCEEEEBSSC-CGGGHHHHHTCSSBSCEEES
T ss_pred cCCCHHHHHHHHHC---CCCEEEE---ecCccccCHHHHHHHHhhC--CCCcEEEeCCC-CHHHHHHHHhCCCcEEEEeh
Confidence 57789999887764 4898877 443 23 889999998753 57898866654 35778899999998764
Q ss_pred --eCCCCHHHHHHHHHHH
Q 008761 136 --VKPLRTNELLNLWTHM 151 (554)
Q Consensus 136 --~KP~~~eeL~~~L~~l 151 (554)
.+ -+.+++....+++
T Consensus 181 ai~~-~d~~~i~~~a~~~ 197 (207)
T 2yw3_A 181 WLLQ-GNLEAVRAKVRAA 197 (207)
T ss_dssp GGGS-SCHHHHHHHHHHH
T ss_pred hhhC-CCHHHHHHHHHHH
Confidence 33 3344455554444
No 255
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=45.19 E-value=53 Score=33.06 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=58.4
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKC-SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~-g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
|.|+++||.||.--..-+......|... +++|+.+.+.... .+.+. .+.+-..+ | ++.+-..
T Consensus 1 M~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~~--~~~~~~~~------~----~~~ll~~--- 63 (362)
T 3fhl_A 1 MSLEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKE--LSKER--YPQASIVR------S----FKELTED--- 63 (362)
T ss_dssp --CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGGTT--CTTSEEES------C----SHHHHTC---
T ss_pred CCCCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHHh--CCCCceEC------C----HHHHhcC---
Confidence 4467899999997665544344455444 6777633322211 12111 11221111 1 1222222
Q ss_pred CCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 107 QRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 107 ~~iPIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
+.+-+|+++.... .+.+..|+++|..=|+.||+. .++..+.++.
T Consensus 64 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 111 (362)
T 3fhl_A 64 PEIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIAL 111 (362)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHH
Confidence 4566777765433 668899999999999999984 5565554443
No 256
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=45.18 E-value=42 Score=30.91 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC--CcHHHHHHHHHhccCCCCceEEE--EecCCCHHHHHHHHHcCCCEEEeCCC
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIM--MSAQDEVSVVVKCLRLGAADYLVKPL 139 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~--mDGlElLr~Ir~~~~~~~iPIIV--LSs~~d~e~~~eAL~aGA~DyL~KP~ 139 (554)
+.+++++.+.......|+|-+- +|- ..|+++++.|++.. +.+||.+ +........+..+.++||+.++....
T Consensus 11 ~~~~~~~~~~~~~~~~diie~G--~p~~~~~g~~~i~~ir~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEVG--TPFLIREGVNAIKAIKEKY--PHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV 86 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEC--HHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhhcCccEEEeC--cHHHHhccHHHHHHHHHhC--CCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Confidence 5666777666532245544333 243 35789999998753 4677753 22322233488899999999888554
Q ss_pred CH
Q 008761 140 RT 141 (554)
Q Consensus 140 ~~ 141 (554)
..
T Consensus 87 ~~ 88 (211)
T 3f4w_A 87 TD 88 (211)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 257
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=45.01 E-value=1.3e+02 Score=28.05 Aligned_cols=84 Identities=10% Similarity=0.071 Sum_probs=52.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCC
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~ 106 (554)
.+..-+|||..-..-+-..+...|.+.|+.|+ ...+...+.+...+.......+.+| +-+.+.+ ++++.+.+..
T Consensus 6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D--~~~~~~~~~~~~~~~~~~-- 81 (261)
T 3n74_A 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAAD--ISKEADVDAAVEAALSKF-- 81 (261)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECC--TTSHHHHHHHHHHHHHHH--
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEec--CCCHHHHHHHHHHHHHhc--
Confidence 34456899999999999999999998999887 4556555444444432234444444 4444443 3556665432
Q ss_pred CCceEEEEec
Q 008761 107 QRIPVIMMSA 116 (554)
Q Consensus 107 ~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 82 g~id~li~~A 91 (261)
T 3n74_A 82 GKVDILVNNA 91 (261)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4566776654
No 258
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=44.88 E-value=1.7e+02 Score=28.04 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCC--CHHH----HHHHHHcCCCEEEe
Q 008761 67 QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD--EVSV----VVKCLRLGAADYLV 136 (554)
Q Consensus 67 EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~--d~e~----~~eAL~aGA~DyL~ 136 (554)
++.+.+.+. ..|+|.+.. + -+++.+++|... .++|||+..+-. +.+. +.+++++||+.+..
T Consensus 170 ~~a~~a~~~--Gad~i~~~~--~--~~~~~l~~i~~~---~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 170 HAARLGAEL--GADIVKTSY--T--GDIDSFRDVVKG---CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp HHHHHHHHT--TCSEEEECC--C--SSHHHHHHHHHH---CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHc--CCCEEEECC--C--CCHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 333444444 689988874 2 468899998865 468999988755 3444 66677899998854
No 259
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=44.72 E-value=34 Score=31.46 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=43.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..++...+.. ..|+|-+... ..-|++.+++++... +++||+...+-. .+.+.+++.+||+.+..
T Consensus 113 t~~e~~~a~~~---Gad~vk~~~~--~~~g~~~~~~l~~~~--~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMKL---GHTILKLFPG--EVVGPQFVKAMKGPF--PNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHHT---TCCEEEETTH--HHHHHHHHHHHHTTC--TTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHc---CCCEEEEcCc--cccCHHHHHHHHHhC--CCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 56776666543 4777655321 123788888887642 478888776654 45788899999998854
No 260
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=44.55 E-value=2.3e+02 Score=28.21 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=56.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
+.+++|.||.--..-+..+..+....+++++ .+. +.+.+.+........+.+...+ + ++.+-.. .
T Consensus 4 ~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~------~----~~~ll~~---~ 70 (362)
T 1ydw_A 4 ETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG------S----YESLLED---P 70 (362)
T ss_dssp --CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES------S----HHHHHHC---T
T ss_pred CCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeC------C----HHHHhcC---C
Confidence 3468999998765555444444443467765 444 4444444443321001111111 1 1222221 3
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHH
Q 008761 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLN 146 (554)
Q Consensus 108 ~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~ 146 (554)
.+-+|+++... ..+.+..|+++|..=++.||+. .++...
T Consensus 71 ~~D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~ 113 (362)
T 1ydw_A 71 EIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDK 113 (362)
T ss_dssp TCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHH
T ss_pred CCCEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHH
Confidence 45666666543 3567889999999999999975 344443
No 261
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=44.51 E-value=69 Score=33.21 Aligned_cols=66 Identities=17% Similarity=0.019 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCc-HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+.++.+.+. .+|+|.+|....... -++.+++|++.. +.+|||+ -.-...+.+..+.++||+...+
T Consensus 102 ~e~~~~a~~a--GvdvI~id~a~G~~~~~~e~I~~ir~~~--~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRDA--GADFFCVDVAHAHAKYVGKTLKSLRQLL--GSRCIMA-GNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHHT--TCCEEEEECSCCSSHHHHHHHHHHHHHH--TTCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcHhHHHHHHHHHHhc--CCCeEEE-cCcCCHHHHHHHHHcCCCEEEE
Confidence 4445555444 699999997654332 257888888753 4678776 1234567788999999998876
No 262
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=44.30 E-value=61 Score=32.15 Aligned_cols=108 Identities=12% Similarity=0.110 Sum_probs=58.7
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHH---HHHHhccCCC
Q 008761 32 KVRILLCDN-DSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKML---KYITRDKELQ 107 (554)
Q Consensus 32 kirVLIVDD-d~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElL---r~Ir~~~~~~ 107 (554)
|+||.||.- -..-...+ ..|...+.+++.+.+.......+.+. .+.+-+.+ +--+++ +.|.... .
T Consensus 3 mirvgiIG~gG~i~~~h~-~~l~~~~~~lvav~d~~~~~~~~~~~--~~~~~~~~------~~~~ll~~~~~l~~~~--~ 71 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHL-KAIKEVGGVLVASLDPATNVGLVDSF--FPEAEFFT------EPEAFEAYLEDLRDRG--E 71 (312)
T ss_dssp CCEEEEECTTSSSHHHHH-HHHHHTTCEEEEEECSSCCCGGGGGT--CTTCEEES------CHHHHHHHHHHHHHTT--C
T ss_pred ceEEEEECCChHHHHHHH-HHHHhCCCEEEEEEcCCHHHHHHHhh--CCCCceeC------CHHHHHHHhhhhcccC--C
Confidence 689999997 33334444 44444577766433332222222221 22222211 112333 3333211 5
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 108 ~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
.+-+|+|+... -.+.+..|+++|..=|+.||+. .++..+.++.
T Consensus 72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 118 (312)
T 3o9z_A 72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKEL 118 (312)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHH
T ss_pred CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHH
Confidence 66777776543 3668999999999999999975 4565554443
No 263
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=44.12 E-value=2.2e+02 Score=28.92 Aligned_cols=103 Identities=9% Similarity=0.083 Sum_probs=58.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh--------CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVK--------CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~--------~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
++||-||.-=..-+..+..+... .+.+|+ ++. +.+.|-+..+.. ...-+.-|+ +.|-
T Consensus 26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~--~~~~~y~d~-----------~~ll 92 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL--GAEKAYGDW-----------RELV 92 (412)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH--TCSEEESSH-----------HHHH
T ss_pred cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc--CCCeEECCH-----------HHHh
Confidence 69999999655444333333221 135665 444 444454444433 222233222 2222
Q ss_pred hccCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 102 RDKELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
.. +.+-+|+|+.... .+.+..||++|-.=|+.||+. .++..+.++.
T Consensus 93 ~~---~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 142 (412)
T 4gqa_A 93 ND---PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQA 142 (412)
T ss_dssp HC---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHH
T ss_pred cC---CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHH
Confidence 22 4566777765433 678999999999999999985 4555554443
No 264
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=44.02 E-value=77 Score=33.93 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCc-HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+.++.+.+. .+|+|.+|...+... -++++++|++.. +.+|||+ ..-...+.+..+.++||+.+..
T Consensus 229 ~~~~~a~~l~~a--G~d~I~id~a~g~~~~~~~~v~~i~~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAA--GVDVVVVDTAHGHSKGVIERVRWVKQTF--PDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHT--TCSEEEEECSCCSBHHHHHHHHHHHHHC--TTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhhc--ccceEEecccCCcchhHHHHHHHHHHHC--CCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 334444555444 699999998876543 367889998753 5678776 3345667888999999998875
No 265
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=43.97 E-value=40 Score=30.71 Aligned_cols=83 Identities=12% Similarity=0.246 Sum_probs=48.9
Q ss_pred CCcEEEEEeCCHHH----------HHHHHHHHhhCCCEEEEE-----------------C---CHHHHHHHHH----hcC
Q 008761 31 SKVRILLCDNDSNS----------SDAVFSLLVKCSYQVTSV-----------------R---SPRQVIDALN----AEG 76 (554)
Q Consensus 31 skirVLIVDDd~~~----------r~~L~~lL~~~g~eV~~A-----------------~---dg~EALe~L~----~~~ 76 (554)
..++|+++.|+-.. ...|.+.|...++.|... - ...+.+..+. ..
T Consensus 4 ~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~~~- 82 (215)
T 2vpt_A 4 KTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTH- 82 (215)
T ss_dssp CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHHH-
T ss_pred CceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhhcc-
Confidence 46799999998764 467777887666654322 1 1233333332 23
Q ss_pred CCceEEEEecCCCCC--------cH-HHHHHHHHhccCCCCceEEEEecC
Q 008761 77 SDIDLILAEVDLPMT--------KG-LKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 77 ~~PDLILLDi~MP~m--------DG-lElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
+||+|++.+-.-+. .. -++++.|++.. +..+||+++-.
T Consensus 83 -~pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~--p~~~ii~~~~~ 129 (215)
T 2vpt_A 83 -NPDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVK--PNVTLFVADYY 129 (215)
T ss_dssp -CCSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHC--TTCEEEEECCC
T ss_pred -CCCEEEEEccccccCCCCChhHHHHHHHHHHHHHhC--CCCEEEEEeCC
Confidence 79999987632211 11 24666777653 56777777643
No 266
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=43.80 E-value=1e+02 Score=31.57 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=59.5
Q ss_pred HHHHHHHhhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHHHhccCCCCceEEEEecCC
Q 008761 46 DAVFSLLVKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 46 ~~L~~lL~~~g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
+.+..+-+..+.-| ..+.+.++|...+.. ..|.|.+.-+-. ...-++++..++..- ...+|||...+-.
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~-~~~ipvia~GGI~ 290 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAA-QGRIPVFLDGGVR 290 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT-TTSSCEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHh-CCCCEEEEECCCC
Confidence 44555555545433 356778888776654 489998854211 124567788887642 1369999999988
Q ss_pred CHHHHHHHHHcCCCEEEe
Q 008761 119 EVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 119 d~e~~~eAL~aGA~DyL~ 136 (554)
....+.+++.+||+.+..
T Consensus 291 ~~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 291 RGTDVFKALALGAAGVFI 308 (370)
T ss_dssp SHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEee
Confidence 999999999999999854
No 267
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=43.67 E-value=1.1e+02 Score=31.59 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=60.2
Q ss_pred HHHHHHHhhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHHHhccCCCCceEEEEecCC
Q 008761 46 DAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (554)
Q Consensus 46 ~~L~~lL~~~g--~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~Ir~~~~~~~iPIIVLSs~~ 118 (554)
+.+..+-+..+ +-|..+.+.++|...... ..|.|++.-+-. +...++++.+|...- ...+|||.-.+-.
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av-~~~ipVia~GGI~ 282 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAV-KGKIEVYMDGGVR 282 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHH-TTSSEEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHh-CCCCeEEEECCCC
Confidence 33444444434 334466788888877654 589998854211 234578888886532 1368999999989
Q ss_pred CHHHHHHHHHcCCCEEEe
Q 008761 119 EVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 119 d~e~~~eAL~aGA~DyL~ 136 (554)
+...+.++|.+||+....
T Consensus 283 ~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 283 TGTDVLKALALGARCIFL 300 (352)
T ss_dssp SHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999854
No 268
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=43.43 E-value=76 Score=30.13 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhcCCCceEE-EEecCCC---CCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDIDLI-LAEVDLP---MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLI-LLDi~MP---~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+..+.+.+. ..|.| +.|+.-. ...-++++++|++. ..+|||+-..-.+.+.+.+++..||+..+.
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 455555555554 45644 4566422 12237888998875 578999888888889999999999887754
No 269
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=43.43 E-value=45 Score=31.94 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEecC---C-CCC-cHHHHHHHHHhccCCCCceEE--EEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVD---L-PMT-KGLKMLKYITRDKELQRIPVI--MMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~---M-P~m-DGlElLr~Ir~~~~~~~iPII--VLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+.++.+.+. ..|+|=+|+. . |.+ .|.++++.|++. ...|+. +++. +.......++++||+.+..
T Consensus 18 ~l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~---~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 18 RLGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPL---TKKTLDVHLMIV-EPEKYVEDFAKAGADIISV 91 (230)
T ss_dssp GHHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGG---CCSEEEEEEESS-SGGGTHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhh---cCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEE
Confidence 455666666554 4676666652 1 222 377999999875 345665 6664 3234567899999999977
Q ss_pred CCC--CHHHHHHHHHH
Q 008761 137 KPL--RTNELLNLWTH 150 (554)
Q Consensus 137 KP~--~~eeL~~~L~~ 150 (554)
... ..+.+...++.
T Consensus 92 h~e~~~~~~~~~~~~~ 107 (230)
T 1tqj_A 92 HVEHNASPHLHRTLCQ 107 (230)
T ss_dssp ECSTTTCTTHHHHHHH
T ss_pred CcccccchhHHHHHHH
Confidence 655 43444444433
No 270
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=43.31 E-value=93 Score=32.02 Aligned_cols=99 Identities=12% Similarity=0.171 Sum_probs=56.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC--CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC--SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~--g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
.++||.||.-- . .+.-...|.+. +++++ +++ +.+.|.+..+.. ... +..|+. ++ -
T Consensus 6 ~~~rv~VvG~G-~-g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~--gv~-~~~~~~-------~l----~----- 64 (372)
T 4gmf_A 6 PKQRVLIVGAK-F-GEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF--GIP-LYTSPE-------QI----T----- 64 (372)
T ss_dssp -CEEEEEECST-T-THHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT--TCC-EESSGG-------GC----C-----
T ss_pred CCCEEEEEehH-H-HHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh--CCC-EECCHH-------HH----h-----
Confidence 47899999964 3 33333444332 57766 444 455555555443 222 233331 11 1
Q ss_pred CCceEEEEec-C-CC----HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 107 QRIPVIMMSA-Q-DE----VSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 107 ~~iPIIVLSs-~-~d----~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
.++-+++|.. . .- .+.+.+||++|..=++.||++.++..+.++.
T Consensus 65 ~~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~ 114 (372)
T 4gmf_A 65 GMPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTL 114 (372)
T ss_dssp SCCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHH
T ss_pred cCCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHH
Confidence 1233343332 1 11 5789999999999999999988776555443
No 271
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=43.15 E-value=77 Score=29.43 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEecCCCCC---cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 63 RSPRQVIDALNAEGSDID-LILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 63 ~dg~EALe~L~~~~~~PD-LILLDi~MP~m---DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+..+.++.+.+. ..| |.+.|...... ..++++++|++. ..+||++...-.+.+.+.+++++||+.++.
T Consensus 33 ~~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4566666666655 467 44545433211 246788888764 468999877777888889999999887764
No 272
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=43.12 E-value=2.4e+02 Score=28.68 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=53.5
Q ss_pred EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc--CCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 58 QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK--ELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 58 eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~--~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
.++..-...+.++.+... .+|.|++|++=...+--++...|+... .....+++|=+...+...+..+++.|++.++
T Consensus 45 g~~l~i~~p~~~e~a~~~--GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gIm 122 (339)
T 1izc_A 45 GVAHGIPSTFVTKVLAAT--KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIV 122 (339)
T ss_dssp EEEECSCCHHHHHHHHHT--CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEE
T ss_pred EEEEECCCHHHHHHHHhC--CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEE
Confidence 344333344455555544 699999999665555445555554321 1112555555555567788889999998764
Q ss_pred e-CCCCHHHHHHHHHH
Q 008761 136 V-KPLRTNELLNLWTH 150 (554)
Q Consensus 136 ~-KP~~~eeL~~~L~~ 150 (554)
. |=-+.+++......
T Consensus 123 lP~V~saee~~~~~~~ 138 (339)
T 1izc_A 123 IPHVETVEEVREFVKE 138 (339)
T ss_dssp ETTCCCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHH
Confidence 4 33356777655433
No 273
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=42.98 E-value=46 Score=33.67 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccCCCCceEEEEe--cCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 008761 93 GLKMLKYITRDKELQRIPVIMMS--AQDEVSVVVKCLRLGAADYLVK-----PLRTNELLNLWTHMW 152 (554)
Q Consensus 93 GlElLr~Ir~~~~~~~iPIIVLS--s~~d~e~~~eAL~aGA~DyL~K-----P~~~eeL~~~L~~ll 152 (554)
.++++++|++. ..+|||++. .-...+.+.+++++||+.++.= --++......+...+
T Consensus 186 d~elI~~Ike~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av 249 (291)
T 3o07_A 186 PVSLLKDVLEK---GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEAT 249 (291)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHc---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHH
Confidence 47899999875 578999884 3457889999999999999653 334555555554444
No 274
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=42.84 E-value=68 Score=31.87 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=58.5
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHH---HHHHhccCCC
Q 008761 32 KVRILLCDN-DSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKML---KYITRDKELQ 107 (554)
Q Consensus 32 kirVLIVDD-d~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElL---r~Ir~~~~~~ 107 (554)
|+||.||.- -..-...+ ..|...+.+++.+.+.......+... .+.+-+.+ +--+++ +.|.. ....
T Consensus 3 mirvgiIG~gG~i~~~h~-~~l~~~~~~lvav~d~~~~~~~~~~~--~~~~~~~~------~~~~ll~~~~~l~~-~~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHM-RAIKDTGNCLVSAYDINDSVGIIDSI--SPQSEFFT------EFEFFLDHASNLKR-DSAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHH-HHHHHTTCEEEEEECSSCCCGGGGGT--CTTCEEES------SHHHHHHHHHHHTT-STTT
T ss_pred ceEEEEECCCcHHHHHHH-HHHHhCCCEEEEEEcCCHHHHHHHhh--CCCCcEEC------CHHHHHHhhhhhhh-ccCC
Confidence 689999987 33333434 44444577766433332222222222 22222221 122333 33321 0115
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 108 ~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
.+-+|+|+... -.+.+.+|+++|..=|+.||+. .++..+.++
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 118 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAV 118 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHH
Confidence 67777776543 3668999999999999999975 456555444
No 275
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=42.77 E-value=53 Score=32.49 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=59.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++++|+.+.+. ...+..++...+. .|......++..+.+. ..|++++-.. .+.-|+.+++.+. ..+|
T Consensus 242 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~EAma-----~G~P 310 (394)
T 2jjm_A 242 AKLLLVGDGPE-FCTILQLVKNLHIEDRVLFLGKQDNVAELLA----MSDLMLLLSE-KESFGLVLLEAMA-----CGVP 310 (394)
T ss_dssp CEEEEECCCTT-HHHHHHHHHTTTCGGGBCCCBSCSCTHHHHH----TCSEEEECCS-CCSCCHHHHHHHH-----TTCC
T ss_pred CEEEEECCchH-HHHHHHHHHHcCCCCeEEEeCchhhHHHHHH----hCCEEEeccc-cCCCchHHHHHHh-----cCCC
Confidence 45555554432 3344444444332 1222222233333433 3577776443 2334667777765 4578
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
||+... .. ..+.+..|-..++..|-+.++|.+.|..++..
T Consensus 311 vI~~~~-~~---~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 311 CIGTRV-GG---IPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp EEEECC-TT---STTTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred EEEecC-CC---hHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 775432 21 12334557788999999999999999888764
No 276
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=42.70 E-value=1.2e+02 Score=28.51 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHhcCCCceEEE-EecCCCCC---cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 63 RSPRQVIDALNAEGSDIDLIL-AEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 63 ~dg~EALe~L~~~~~~PDLIL-LDi~MP~m---DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
.+..+..+.+... ..|.|. .|...... ..+++++.|++. ..+||++-..-.+.+.+.+++++||+..+.-
T Consensus 30 ~d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 30 GDPVELGKFYSEI--GIDELVFLDITASVEKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp TCHHHHHHHHHHT--TCCEEEEEESSCSSSHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred cCHHHHHHHHHHc--CCCEEEEECCchhhcCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3555555555544 456544 44332221 235667777753 5789998888788888999999999888653
No 277
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=42.41 E-value=36 Score=31.54 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=34.9
Q ss_pred CceEEEEecCCCCCcH-------HHHHHHHHhccC--CCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 78 DIDLILAEVDLPMTKG-------LKMLKYITRDKE--LQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 78 ~PDLILLDi~MP~mDG-------lElLr~Ir~~~~--~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..|.|+++-..|+.+| ++-++.+++... ...+||++.-+-. .+.+.+++++||+.++.
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEE
Confidence 4788888776665444 344555554320 0156766554433 56666788889998854
No 278
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=42.36 E-value=1.2e+02 Score=28.50 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHc---CCCEEEe
Q 008761 64 SPRQVIDALNAEGSDID-LILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL---GAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PD-LILLDi~MP~m---DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~a---GA~DyL~ 136 (554)
+..+.++.+... .+| |+++++.-.++ -.++++++|++. ..+|||...+-...+.+.+++++ ||+.++.
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAA---TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 455655555544 477 44456542221 247899999864 47899998888888899999999 9998864
Q ss_pred ------CCCCHHHHHHH
Q 008761 137 ------KPLRTNELLNL 147 (554)
Q Consensus 137 ------KP~~~eeL~~~ 147 (554)
.|+...++...
T Consensus 222 G~al~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 222 GKALYAKAFTLEEALEA 238 (244)
T ss_dssp CHHHHTTSSCHHHHHHH
T ss_pred eHHHHcCCCCHHHHHHH
Confidence 35555554443
No 279
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=42.07 E-value=1.4e+02 Score=29.75 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
+++||.||.--..-+......|... +++|+ .+. +.+.+. +. .+.+-+. .|- +.+-.. +
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~----~~--~~~~~~~------~~~----~~ll~~---~ 66 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH----AD--WPAIPVV------SDP----QMLFND---P 66 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH----TT--CSSCCEE------SCH----HHHHHC---S
T ss_pred CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH----hh--CCCCceE------CCH----HHHhcC---C
Confidence 4689999997765554345555544 67876 443 333322 21 2222111 111 222222 4
Q ss_pred CceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 108 RIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 108 ~iPIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
.+-+|+++.... .+.+..|+++|..=|+.||+. .++..+.++
T Consensus 67 ~vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~ 112 (352)
T 3kux_A 67 SIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKE 112 (352)
T ss_dssp SCCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHH
Confidence 566777765433 678899999999999999964 455554443
No 280
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=41.87 E-value=1.7e+02 Score=29.44 Aligned_cols=101 Identities=11% Similarity=0.148 Sum_probs=57.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
+.++||.||.--..-+......|... +++|+ .+. +.+.+. .. .+.+-+.+ |- +.+-..
T Consensus 5 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~----~~--~~~~~~~~------~~----~~ll~~--- 65 (364)
T 3e82_A 5 NNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK----RD--LPDVTVIA------SP----EAAVQH--- 65 (364)
T ss_dssp --CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH----HH--CTTSEEES------CH----HHHHTC---
T ss_pred CCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH----hh--CCCCcEEC------CH----HHHhcC---
Confidence 35789999998665554455556554 67876 443 343322 21 12221211 11 222222
Q ss_pred CCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 107 QRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 107 ~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
..+-+|+++... ..+.+..|+++|..=|+.||+. .++..+.++
T Consensus 66 ~~~D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~ 112 (364)
T 3e82_A 66 PDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIA 112 (364)
T ss_dssp TTCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHH
Confidence 456667666543 3668899999999999999985 455544433
No 281
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=41.67 E-value=71 Score=33.56 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+.++.+.+. .+|+|++|.....-.. .++++++++. ..+|||+= .-...+.+..++++||+.++.
T Consensus 146 ~e~~~~lvea--GvdvIvldta~G~~~~~~e~I~~ik~~---~~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSK---MNIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHH--TCSEEEECCSCCSBHHHHHHHHHHHTT---CCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcccHHHHHHHHHhc---CCCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 4555555555 6999999976543222 6788888764 36787752 224577888999999999887
No 282
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=41.55 E-value=1.3e+02 Score=28.84 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=40.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC--------CHHHHHHHHHhcCCCceEEEEecCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR--------SPRQVIDALNAEGSDIDLILAEVDLP 89 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~--------dg~EALe~L~~~~~~PDLILLDi~MP 89 (554)
++++|||..-.-.+-..|...|...|++|+.+. +.....+.+... .+|+||.-....
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~--~~d~vih~a~~~ 66 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASE--RIDQVYLAAAKV 66 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHH--CCSEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhc--CCCEEEEcCeec
Confidence 456899999999999999999988899877543 333333444433 589988655443
No 283
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=41.48 E-value=1.4e+02 Score=29.91 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCCceEEEEecCC--------CCCcHHHHHHHHHhccCCCCceEEEEecCC------------C-----
Q 008761 65 PRQVIDALNAEGSDIDLILAEVDL--------PMTKGLKMLKYITRDKELQRIPVIMMSAQD------------E----- 119 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILLDi~M--------P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~------------d----- 119 (554)
...|++.+.+.. ..+|+||.... -++..+..++++- +.+||++-+++. .
T Consensus 150 i~~ave~i~~~G-n~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~-----~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v 223 (285)
T 3sz8_A 150 LKHVVSKCGEVG-NDRVMLCERGSSFGYDNLVVDMLGFRQMAETT-----GGCPVIFDVTHSLQCRDPLGDASGGRRRQV 223 (285)
T ss_dssp THHHHHHHHHTT-CCCEEEEECCEECSSSCEECCTTHHHHHHHHT-----TSCCEEEETTTTCC---------------H
T ss_pred HHHHHHHHHHcC-CCcEEEEeCCCCCCCCcCccCHHHHHHHHHhC-----CCCCEEEeCCCccccCCCcCCCCCCchhhH
Confidence 467888887643 67999997532 2355655554431 248998866665 3
Q ss_pred HHHHHHHHHcCCCE-EEeCCCC-------------HHHHHHHHHHHH
Q 008761 120 VSVVVKCLRLGAAD-YLVKPLR-------------TNELLNLWTHMW 152 (554)
Q Consensus 120 ~e~~~eAL~aGA~D-yL~KP~~-------------~eeL~~~L~~ll 152 (554)
......|..+||+. +|.|-++ +++|...++.+.
T Consensus 224 ~~~a~AAvA~GA~gl~IE~H~~pd~al~D~~~sl~p~el~~lv~~i~ 270 (285)
T 3sz8_A 224 LDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMK 270 (285)
T ss_dssp HHHHHHHHHHCCSEEEEEEESCGGGCSCSSCCCEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEeccChhccCCchhhccCHHHHHHHHHHHH
Confidence 45678899999997 5655332 456665555553
No 284
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=41.46 E-value=1.7e+02 Score=26.44 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=26.2
Q ss_pred EEEEEeCCHHHHHHHHHHHh-hCCCEEE-EECCHH
Q 008761 34 RILLCDNDSNSSDAVFSLLV-KCSYQVT-SVRSPR 66 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~-~~g~eV~-~A~dg~ 66 (554)
+|||..-...+-..+.+.|. ..|++|. ...+..
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~ 41 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK 41 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 59999988888888888887 7899887 445554
No 285
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=41.43 E-value=1.8e+02 Score=28.22 Aligned_cols=84 Identities=11% Similarity=0.008 Sum_probs=51.8
Q ss_pred CcEEEEE-e-CCHHH---HHHHHHHHhhCCCEEEE--E----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHH
Q 008761 32 KVRILLC-D-NDSNS---SDAVFSLLVKCSYQVTS--V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYI 100 (554)
Q Consensus 32 kirVLIV-D-Dd~~~---r~~L~~lL~~~g~eV~~--A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~I 100 (554)
.-+|.|| + ++... .+.+...|+..|.+|.. . .+....+..+... .||+|++... +.+...+++.+
T Consensus 149 ~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~~--~~~a~~~~~~~ 224 (366)
T 3td9_A 149 AKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSF--NPDAIYITGY--YPEIALISRQA 224 (366)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHT--CCSEEEECSC--HHHHHHHHHHH
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhc--CCCEEEEccc--hhHHHHHHHHH
Confidence 3477777 3 44433 34456677777877652 1 3556677777765 7999998432 34567788888
Q ss_pred HhccCCCCceEEEEecCCCHH
Q 008761 101 TRDKELQRIPVIMMSAQDEVS 121 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs~~d~e 121 (554)
++.. ..+|||.........
T Consensus 225 ~~~g--~~~~~~~~~~~~~~~ 243 (366)
T 3td9_A 225 RQLG--FTGYILAGDGADAPE 243 (366)
T ss_dssp HHTT--CCSEEEECGGGCSTH
T ss_pred HHcC--CCceEEeeCCcCCHH
Confidence 8765 456766544444433
No 286
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=41.36 E-value=1.7e+02 Score=29.27 Aligned_cols=93 Identities=26% Similarity=0.250 Sum_probs=57.0
Q ss_pred EEEEEeCCHHHHH----HHHHHHhhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 34 RILLCDNDSNSSD----AVFSLLVKCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 34 rVLIVDDd~~~r~----~L~~lL~~~g~--eV-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
-+||.||+..+.- .+...-+..+. .| +++.+.+++.+.+.. .+|+|.+|-.-| +.++++.+...
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a---GaD~I~ld~~~~-----~~~k~av~~v~- 238 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA---GADLILLDNFPL-----EALREAVRRVG- 238 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH---TCSEEEEESCCH-----HHHHHHHHHHT-
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhC-
Confidence 4688887665432 23333233332 23 377899999998865 489999997433 22333322111
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 107 ~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.++|+++ ++--+.+.+.+..+.|++.+-.
T Consensus 239 ~~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 239 GRVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp TSSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred CCCeEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 2567655 5666788888999999877643
No 287
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=41.03 E-value=1.1e+02 Score=28.75 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=40.0
Q ss_pred CcEEEEEe------CCHHHHHHHHHHHhhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 32 KVRILLCD------NDSNSSDAVFSLLVKCSYQVTSV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 32 kirVLIVD------Dd~~~r~~L~~lL~~~g~eV~~A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
..+|++|+ |.......+.+.|+..|++|... .+.++..+.+.. .|.|++ |+.+-+.+++.|+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 35788886 33335566777777778777766 366666666653 466665 5666666666665
Q ss_pred h
Q 008761 102 R 102 (554)
Q Consensus 102 ~ 102 (554)
.
T Consensus 99 ~ 99 (206)
T 3l4e_A 99 R 99 (206)
T ss_dssp H
T ss_pred H
Confidence 4
No 288
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=40.88 E-value=66 Score=31.51 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=52.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCC----CCC-cHHHHHHHHHhccCCCCceEEE-EecCCCHHHHHHHHHcCCCEEEeC
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDL----PMT-KGLKMLKYITRDKELQRIPVIM-MSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~M----P~m-DGlElLr~Ir~~~~~~~iPIIV-LSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
+..++++.+... ..|.+=+|+.- |.+ -|.++++.|+... +..|+.+ +--.+-...+..+.++||+-+...
T Consensus 41 ~L~~~i~~l~~~--G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~--p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH 116 (246)
T 3inp_A 41 RLGDDVKAVLAA--GADNIHFDVMDNHYVPNLTFGPMVLKALRDYG--ITAGMDVHLMVKPVDALIESFAKAGATSIVFH 116 (246)
T ss_dssp GHHHHHHHHHHT--TCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHT--CCSCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHHc--CCCEEEEEecCCCcCcchhcCHHHHHHHHHhC--CCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence 467788887764 46666666532 333 3889999998753 3566654 333333456777889999888776
Q ss_pred CCCHHHHHHHHHH
Q 008761 138 PLRTNELLNLWTH 150 (554)
Q Consensus 138 P~~~eeL~~~L~~ 150 (554)
......+.+.++.
T Consensus 117 ~Ea~~~~~~~i~~ 129 (246)
T 3inp_A 117 PEASEHIDRSLQL 129 (246)
T ss_dssp GGGCSCHHHHHHH
T ss_pred cccchhHHHHHHH
Confidence 5444444444433
No 289
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=40.83 E-value=73 Score=29.92 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=52.0
Q ss_pred CHHHHHHHHHhcCCCceEE-EEecCCCCC---cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHc---CCCEEEe
Q 008761 64 SPRQVIDALNAEGSDIDLI-LAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL---GAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLI-LLDi~MP~m---DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~a---GA~DyL~ 136 (554)
+..+.++.+... .++.| +.+..-.+. -.++++++|++. ..+|||...+-...+.+.+++++ ||+.++.
T Consensus 150 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 150 DLWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp EHHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 345555555544 46755 456543322 257888888864 57899998888888889999998 9998754
Q ss_pred ------CCCCHHHHHH
Q 008761 137 ------KPLRTNELLN 146 (554)
Q Consensus 137 ------KP~~~eeL~~ 146 (554)
.|+...++..
T Consensus 225 G~al~~~~~~~~~~~~ 240 (244)
T 2y88_A 225 GKALYARRFTLPQALA 240 (244)
T ss_dssp CHHHHTTSSCHHHHHH
T ss_pred cHHHHCCCcCHHHHHH
Confidence 3555554443
No 290
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=40.71 E-value=1.1e+02 Score=30.16 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred CcEEEEEeCCHHHH----HHHHHHHhhCCCEEEEECC-------------------------------------------
Q 008761 32 KVRILLCDNDSNSS----DAVFSLLVKCSYQVTSVRS------------------------------------------- 64 (554)
Q Consensus 32 kirVLIVDDd~~~r----~~L~~lL~~~g~eV~~A~d------------------------------------------- 64 (554)
++|||++-....-. ..|...|.+.|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEe
Q 008761 65 ----------------------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 65 ----------------------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
.....+.++.. +||+|++|. +...|.-+.+. ..+|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~PD~Vv~~~--~~~~~~~aa~~-------~giP~v~~~ 142 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAW--RPSVLLVDV--CALIGRVLGGL-------LDLPVVLHR 142 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEET--TCHHHHHHHHH-------TTCCEEEEC
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHhc--CCCEEEeCc--chhHHHHHHHH-------hCCCEEEEe
No 291
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=40.29 E-value=42 Score=31.40 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=48.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC--------CcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008761 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPM--------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (554)
Q Consensus 61 ~A~dg~EALe~L~~~~~~PDLILLDi~MP~--------mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~ 132 (554)
.+.+.+++.... . ..|.|+++--.|. .-|++.++.+.... ...+|||.+.+-. .+.+.+++++||+
T Consensus 94 s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~-~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 94 SCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAK-IIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTT-CSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred ecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhc-CCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 678888876654 3 5899998765442 23678888887531 0368999887654 5677889999999
Q ss_pred EE
Q 008761 133 DY 134 (554)
Q Consensus 133 Dy 134 (554)
.+
T Consensus 168 gV 169 (210)
T 3ceu_A 168 GA 169 (210)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 292
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=40.13 E-value=2e+02 Score=26.73 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 45 SDAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~---dg---~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
...+...+...||++..+. +. .+.++.+... .+|.||+-..-+. ...+.++.+.. ..+|||++..
T Consensus 24 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 94 (291)
T 3l49_A 24 YQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQ--KPDAIIEQLGNLD-VLNPWLQKIND----AGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHH--CCSEEEEESSCHH-HHHHHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHc--CCCEEEEeCCChh-hhHHHHHHHHH----CCCcEEEecC
Confidence 4455666677899877543 22 3455555555 7999987532111 13355666665 4689988864
No 293
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=39.99 E-value=1.6e+02 Score=26.85 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=53.1
Q ss_pred HHhhCCCE-EEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHH
Q 008761 51 LLVKCSYQ-VTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (554)
Q Consensus 51 lL~~~g~e-V~~A~dg~EALe~L~~~-~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~ 128 (554)
.|...+.- +....+.+++.+.++.. ....++|-+.+..| ++.+.++.+++... .+. +|-++.-.+.+.+.+|.+
T Consensus 6 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~-~~~-~ig~~~v~~~~~~~~a~~ 81 (205)
T 1wa3_A 6 LFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKE-KGA-IIGAGTVTSVEQCRKAVE 81 (205)
T ss_dssp HHHHHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHH-TTC-EEEEESCCSHHHHHHHHH
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCC-CCc-EEEecccCCHHHHHHHHH
Confidence 34444543 33445666666655431 12578887766654 56777888876521 122 344434456778889999
Q ss_pred cCCCEEEeCCCCHHHHHH
Q 008761 129 LGAADYLVKPLRTNELLN 146 (554)
Q Consensus 129 aGA~DyL~KP~~~eeL~~ 146 (554)
.||+-. .-|.-..++.+
T Consensus 82 ~Gad~i-v~~~~~~~~~~ 98 (205)
T 1wa3_A 82 SGAEFI-VSPHLDEEISQ 98 (205)
T ss_dssp HTCSEE-ECSSCCHHHHH
T ss_pred cCCCEE-EcCCCCHHHHH
Confidence 999766 55654444443
No 294
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=39.28 E-value=1.6e+02 Score=27.30 Aligned_cols=82 Identities=16% Similarity=0.018 Sum_probs=50.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~ 108 (554)
++.+|||..-..-+-..+...|.+.|+.|+ ...+...+-+..... ...+.++-+++-+.+.+ ++++.+.+.. ..
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~--g~ 77 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL--GNAVIGIVADLAHHEDVDVAFAAAVEWG--GL 77 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTSHHHHHHHHHHHHHHH--CS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--cCCceEEECCCCCHHHHHHHHHHHHHhc--CC
Confidence 345799999999999999999999999887 445554433333322 11344444444444444 3555555432 45
Q ss_pred ceEEEEec
Q 008761 109 IPVIMMSA 116 (554)
Q Consensus 109 iPIIVLSs 116 (554)
+-+|+-.+
T Consensus 78 id~lvnnA 85 (235)
T 3l6e_A 78 PELVLHCA 85 (235)
T ss_dssp CSEEEEEC
T ss_pred CcEEEECC
Confidence 66777665
No 295
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=39.24 E-value=1.7e+02 Score=30.24 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCC-cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~m-DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+.++.+.+. .+|+|.+|..-... .-++.+++|++.. +.+|||+- .-...+.+..+.++||+....
T Consensus 110 ~~~~~~liea--Gvd~I~idta~G~~~~~~~~I~~ik~~~--p~v~Vi~G-~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVEA--GVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIGG-NVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHhc--CCCceEee-eeCCHHHHHHHHHcCCCEEEE
Confidence 4555555554 69999998643222 2357788888753 56777652 234567788899999998877
No 296
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=39.06 E-value=1e+02 Score=32.02 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=54.6
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCE
Q 008761 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133 (554)
Q Consensus 59 V~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~D 133 (554)
|..+.+.++|...... .+|.|++.-+-. +..-++++.++++.- ...+|||+-..-.....+.++|.+||+.
T Consensus 257 vKgv~~~e~A~~a~~a---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~av-~~~ipVia~GGI~~g~Dv~kalalGAd~ 332 (392)
T 2nzl_A 257 AKGILRGDDAREAVKH---GLNGILVSNHGARQLDGVPATIDVLPEIVEAV-EGKVEVFLDGGVRKGTDVLKALALGAKA 332 (392)
T ss_dssp EEEECCHHHHHHHHHT---TCCEEEECCGGGTSSTTCCCHHHHHHHHHHHH-TTSSEEEECSSCCSHHHHHHHHHTTCSE
T ss_pred EEecCCHHHHHHHHHc---CCCEEEeCCCCCCcCCCCcChHHHHHHHHHHc-CCCCEEEEECCCCCHHHHHHHHHhCCCe
Confidence 3356788888777654 589999854311 234567788887542 1358999888888999999999999998
Q ss_pred EEe-CCC
Q 008761 134 YLV-KPL 139 (554)
Q Consensus 134 yL~-KP~ 139 (554)
... .|+
T Consensus 333 V~iGr~~ 339 (392)
T 2nzl_A 333 VFVGRPI 339 (392)
T ss_dssp EEECHHH
T ss_pred eEECHHH
Confidence 854 454
No 297
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=38.97 E-value=1.9e+02 Score=30.78 Aligned_cols=75 Identities=12% Similarity=0.011 Sum_probs=49.7
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCcHHHHHHHHHhccCCC------CceEEEEecCCCHH
Q 008761 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTKGLKMLKYITRDKELQ------RIPVIMMSAQDEVS 121 (554)
Q Consensus 59 V~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----------~mDGlElLr~Ir~~~~~~------~iPIIVLSs~~d~e 121 (554)
+....+.+.|..++... .|+|.+.+.-. +..-++++..+.+..... .+|||.=.+-....
T Consensus 289 ~G~V~t~~~a~~l~~aG---ad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~ 365 (503)
T 1me8_A 289 AGNIVDGEGFRYLADAG---ADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDY 365 (503)
T ss_dssp EEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHH
T ss_pred eccccCHHHHHHHHHhC---CCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHH
Confidence 34678888888887654 78888744210 123455555554321001 57888766778888
Q ss_pred HHHHHHHcCCCEEEe
Q 008761 122 VVVKCLRLGAADYLV 136 (554)
Q Consensus 122 ~~~eAL~aGA~DyL~ 136 (554)
.+.+||.+||+....
T Consensus 366 di~kAlalGA~~V~i 380 (503)
T 1me8_A 366 HMTLALAMGADFIML 380 (503)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999998865
No 298
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.91 E-value=1.8e+02 Score=24.76 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=64.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCceE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPV 111 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iPI 111 (554)
+-|++..-+......+..++...||.|.++.++.+.-+.+.+.-.++..-|+-+-..+..- -.+++.++... ..+-|
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslg--aqvli 80 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLG--AQVLI 80 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHC--CCCEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcC--CeEEE
Confidence 4455556667777789999999999999999999887777664223333332222222221 12344444433 33334
Q ss_pred EEEecCCC--HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 112 IMMSAQDE--VSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 112 IVLSs~~d--~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|+.-...+ .+...+.-+.|..--- -.+++++...+.++++..
T Consensus 81 iiydqdqnrleefsrevrrrgfevrt--vtspddfkkslerlirev 124 (134)
T 2l69_A 81 IIYDQDQNRLEEFSREVRRRGFEVRT--VTSPDDFKKSLERLIREV 124 (134)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEE--ESSHHHHHHHHHHHHHHH
T ss_pred EEEeCchhHHHHHHHHHHhcCceEEE--ecChHHHHHHHHHHHHHh
Confidence 43332111 2233344455532221 124577777777776643
No 299
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=38.87 E-value=47 Score=32.03 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCCCCceEEEEecCCCHH---HHHHHHHcCCCEEEeCCCCHHHHHH
Q 008761 93 GLKMLKYITRDKELQRIPVIMMSAQDEVS---VVVKCLRLGAADYLVKPLRTNELLN 146 (554)
Q Consensus 93 GlElLr~Ir~~~~~~~iPIIVLSs~~d~e---~~~eAL~aGA~DyL~KP~~~eeL~~ 146 (554)
+++++++|++. .++||++++-. +.. ....+.++||+.++.-....+++..
T Consensus 82 ~~~~i~~ir~~---~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~ 134 (262)
T 1rd5_A 82 VLEMLREVTPE---LSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHS 134 (262)
T ss_dssp HHHHHHHHGGG---CSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHH
T ss_pred HHHHHHHHHhc---CCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHH
Confidence 56778888764 57899887522 211 1224899999999886555444433
No 300
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=38.86 E-value=96 Score=33.40 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
+..+.++.+.+. .+|+|.+|...+...+ ++++++|++.. +.+|||+- .-...+.+..+.++||+.++.
T Consensus 256 d~~era~aLvea--Gvd~I~Id~a~g~~~~v~~~i~~i~~~~--~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVKA--SVDAIVLDTAHGHSQGVIDKVKEVRAKY--PSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHC--TTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHhh--ccceEEecccccchhhhhhHHHHHHHhC--CCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 344445555554 6999999988776655 57899998753 56777753 345677888999999988875
No 301
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=38.77 E-value=2.4e+02 Score=28.82 Aligned_cols=101 Identities=10% Similarity=0.178 Sum_probs=53.8
Q ss_pred cEEEEE-eCCHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 33 VRILLC-DNDSNSSDAVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 33 irVLIV-DDd~~~r~~L~~lL~~~g~eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
++++++ .+++..++.+...+.... .|.... ...+...++.. -|+++.+- -|+. .+.. ...+
T Consensus 258 ~~~v~~~~~~~~~~~~l~~~~~~~~-~v~l~~~l~~~~~~~l~~~----ad~vv~~S-----Gg~~--~EA~----a~g~ 321 (403)
T 3ot5_A 258 TELVYPMHLNPAVREKAMAILGGHE-RIHLIEPLDAIDFHNFLRK----SYLVFTDS-----GGVQ--EEAP----GMGV 321 (403)
T ss_dssp EEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHH----EEEEEECC-----HHHH--HHGG----GTTC
T ss_pred ceEEEecCCCHHHHHHHHHHhCCCC-CEEEeCCCCHHHHHHHHHh----cCEEEECC-----ccHH--HHHH----HhCC
Confidence 455554 445555555555443221 233222 23355555543 46766653 2333 2222 2678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
|+|++-...+... ..+.| ..++..+ +.++|...+..++..
T Consensus 322 PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 322 PVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp CEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred CEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHcC
Confidence 9987633333222 35677 5677765 889999998888754
No 302
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=38.76 E-value=1.4e+02 Score=29.05 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=59.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~-~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
|+++||.||.--..-+..+...|.. .++++. .+. +.+.+.+..... .... -.+--++++
T Consensus 4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--~~~~--------~~~~~~ll~-------- 65 (308)
T 3uuw_A 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY--RIMP--------FDSIESLAK-------- 65 (308)
T ss_dssp -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH--TCCB--------CSCHHHHHT--------
T ss_pred cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc--CCCC--------cCCHHHHHh--------
Confidence 5678999999876655545665655 467776 444 444444444332 1111 112223332
Q ss_pred CCceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 107 QRIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 107 ~~iPIIVLSs~--~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
.+-+|+++.. ...+.+..|+++|..=++.||+. .++..+.++.
T Consensus 66 -~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~ 112 (308)
T 3uuw_A 66 -KCDCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIEL 112 (308)
T ss_dssp -TCSEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHH
T ss_pred -cCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHH
Confidence 2345555543 34667889999999999999985 4555554443
No 303
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=38.47 E-value=1.8e+02 Score=25.10 Aligned_cols=70 Identities=7% Similarity=0.088 Sum_probs=46.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
..+|..||-++...+..+..+...++ .+. ...+..+.+..+......+|+|++|.-.-..+..++++.+.
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~ 139 (187)
T 2fhp_A 67 MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKML 139 (187)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHH
Confidence 35899999999999988888876553 233 55677776554432123799999985422334456666663
No 304
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=38.32 E-value=20 Score=33.14 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=32.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILL 84 (554)
|||||.-......+.+.|++.|+++.........++.+... .+|.||+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 99999776666778889988898877655432223334333 4788887
No 305
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=38.30 E-value=82 Score=31.42 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=57.8
Q ss_pred CCCCCcEEEEEeCCHHHH-HHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCC
Q 008761 28 IDRSKVRILLCDNDSNSS-DAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r-~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~ 106 (554)
-.|+++||.||.--..-+ ..+..+....+++|+.+.+... . .+.+-.. .|--++++. .
T Consensus 21 ~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~-------~--~~g~~~~------~~~~~ll~~----~-- 79 (330)
T 4ew6_A 21 QSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG-------T--VEGVNSY------TTIEAMLDA----E-- 79 (330)
T ss_dssp CCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC-------C--CTTSEEE------SSHHHHHHH----C--
T ss_pred ccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh-------h--hcCCCcc------CCHHHHHhC----C--
Confidence 346679999999876655 3444444444677763333221 1 1221111 122233322 1
Q ss_pred CCceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008761 107 QRIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (554)
Q Consensus 107 ~~iPIIVLSs~--~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~ 150 (554)
+.+-+|+++.. .-.+.+.+|+++|..=|+.||+. .++..+.++.
T Consensus 80 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~ 127 (330)
T 4ew6_A 80 PSIDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEAL 127 (330)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHH
Confidence 24556666553 33667899999999999999974 4555554443
No 306
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=38.23 E-value=1.4e+02 Score=27.32 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=50.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-C-C---HHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-R-S---PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRD 103 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~-d---g~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~ 103 (554)
+...+|||..-...+-..+...|.+.|++|+.. . + .++..+.+... ...+.++..++-+.+.+ ++++.+.+.
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 345689999999999999999999899998865 3 2 23333444433 23454444444454444 345555443
Q ss_pred cCCCCceEEEEec
Q 008761 104 KELQRIPVIMMSA 116 (554)
Q Consensus 104 ~~~~~iPIIVLSs 116 (554)
. ..+-+|+-.+
T Consensus 81 ~--~~~d~vi~~A 91 (247)
T 2hq1_A 81 F--GRIDILVNNA 91 (247)
T ss_dssp H--SCCCEEEECC
T ss_pred c--CCCCEEEECC
Confidence 2 3556666654
No 307
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=38.22 E-value=2.7e+02 Score=27.52 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
+..+.++.+.+. .+|+|.+....| .+++++++.. .++|+... ...+.+..+.+.|++.++.-.
T Consensus 84 ~~~~~~~~~~~~--g~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v~g 146 (328)
T 2gjl_A 84 PYAEYRAAIIEA--GIRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSIDG 146 (328)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEEEC
T ss_pred cHHHHHHHHHhc--CCCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEEEC
Confidence 456777777766 799999988766 5788888763 56777533 355677789999999988743
No 308
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=38.10 E-value=2.3e+02 Score=29.20 Aligned_cols=87 Identities=9% Similarity=-0.102 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEecCCCCC---------------------------
Q 008761 44 SSDAVFSLLVKCSYQVTS--V---RSPRQVIDALNAEGSDIDLILAEVDLPMT--------------------------- 91 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~--A---~dg~EALe~L~~~~~~PDLILLDi~MP~m--------------------------- 91 (554)
..+.|+.+.+..+.-|.. + -+.+.|..+... .+|.|.++-. .+.
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~a---Gad~I~V~g~-GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~ 250 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSY---GIKNFDTSGQ-GGTNWIAIEMIRDIRRGNWKAESAKNFLDW 250 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHT---TCCEEECCCB-TSBCHHHHHHHHHHHTTCTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhC---CCCEEEEeCC-CCCcccchhhhhcccccccchhhccccccc
Confidence 455566555554544432 3 467777766654 5899888654 332
Q ss_pred --cHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 92 --KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 92 --DGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.....+.+++... ..+|||.-..-.+...+.+++.+||+.+..
T Consensus 251 g~pt~~~l~~v~~~~--~~ipvia~GGI~~~~d~~kal~lGA~~v~i 295 (368)
T 3vkj_A 251 GVPTAASIMEVRYSV--PDSFLVGSGGIRSGLDAAKAIALGADIAGM 295 (368)
T ss_dssp SCBHHHHHHHHHHHS--TTCEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cccHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1224455555542 358999888888899999999999998854
No 309
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=37.99 E-value=3e+02 Score=26.91 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=57.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
++||.||.--..-...+..+....+++++ .+. +.+.+.+..... ... .- +--+++ .. +.+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~--~~~--~~-------~~~~~l----~~---~~~ 64 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY--GCE--VR-------TIDAIE----AA---ADI 64 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT--TCE--EC-------CHHHHH----HC---TTC
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh--CCC--cC-------CHHHHh----cC---CCC
Confidence 68999999765544444444444478876 444 444444433332 221 21 222232 22 345
Q ss_pred eEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 110 PVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 110 PIIVLSs~--~d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
-+|+++.. ...+.+..|+++|..=++.||+. .++..+.++
T Consensus 65 D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~ 108 (331)
T 4hkt_A 65 DAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLK 108 (331)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CEEEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHH
Confidence 66666654 33667889999999999999965 455544433
No 310
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=37.95 E-value=91 Score=32.10 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=63.3
Q ss_pred HHHHHHHHhhCCC--EEEEEC--CHHHHHHHHHhcCCCc----eEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 45 SDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDI----DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 45 r~~L~~lL~~~g~--eV~~A~--dg~EALe~L~~~~~~P----DLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
...|..++...|. .|.... +.++..+.+.. . |++++-..- +.-|+.+++.+. ..+|||...
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~~-Eg~~~~~lEAma-----~G~PvI~s~- 389 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSFY-EPFGLAPVEAMA-----SGLPAVVTR- 389 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCSC-BCCCSHHHHHHH-----TTCCEEEES-
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECccc-CCCCcHHHHHHH-----cCCCEEEec-
Confidence 6677777776654 244333 45666666653 5 888874432 334667777765 467887542
Q ss_pred CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 117 QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 117 ~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr 153 (554)
.. ...+.+..|..+++..|.+.++|...|..++.
T Consensus 390 ~~---g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 390 NG---GPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp SB---HHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred CC---CHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 22 34456677888899999999999999888764
No 311
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=37.87 E-value=54 Score=32.07 Aligned_cols=87 Identities=11% Similarity=-0.019 Sum_probs=53.5
Q ss_pred HHHHHHHh---hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-C-CcHHHHHHHHHhccCC--CCceEEEEecC
Q 008761 46 DAVFSLLV---KCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-M-TKGLKMLKYITRDKEL--QRIPVIMMSAQ 117 (554)
Q Consensus 46 ~~L~~lL~---~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP-~-mDGlElLr~Ir~~~~~--~~iPIIVLSs~ 117 (554)
..+.+++. ..|..+. .+++.+|+...+.. .+|+|=+...-. . .-.++.+.+|...-+. ..+|+|..++-
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~---gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEA---GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc---CCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 34555544 4587765 77888887766654 367775533211 1 1123444444432100 15788888888
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 008761 118 DEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 118 ~d~e~~~eAL~aGA~DyL~ 136 (554)
.+.+.+.+++. ||+.++.
T Consensus 218 ~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEE
T ss_pred CCHHHHHHHHc-CCCEEEE
Confidence 88999999999 9999975
No 312
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=37.53 E-value=37 Score=31.99 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC--CcHHHHHHHHHhccCCCCceEEEEecC-CC-HHHHHHHHHcCCCEEEeCCC
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIMMSAQ-DE-VSVVVKCLRLGAADYLVKPL 139 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~--mDGlElLr~Ir~~~~~~~iPIIVLSs~-~d-~e~~~eAL~aGA~DyL~KP~ 139 (554)
+.+++++.++.. ...+-++++.+|- ..|.++++.|++.. +..||++-.-. +. ...+..+.++||+-+.....
T Consensus 17 ~~~~~~~~~~~~--~~~vd~ie~g~~~~~~~G~~~i~~lr~~~--~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~ 92 (218)
T 3jr2_A 17 NLTDAVAVASNV--ASYVDVIEVGTILAFAEGMKAVSTLRHNH--PNHILVCDMKTTDGGAILSRMAFEAGADWITVSAA 92 (218)
T ss_dssp SHHHHHHHHHHH--GGGCSEEEECHHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETT
T ss_pred CHHHHHHHHHHh--cCCceEEEeCcHHHHhcCHHHHHHHHHhC--CCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecC
Confidence 455555555443 1122244444432 24667777777642 34566543221 22 22456677788877766555
Q ss_pred CH
Q 008761 140 RT 141 (554)
Q Consensus 140 ~~ 141 (554)
..
T Consensus 93 ~~ 94 (218)
T 3jr2_A 93 AH 94 (218)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 313
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=37.47 E-value=1.4e+02 Score=29.10 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=50.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHH---HHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EA---Le~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~ 106 (554)
.-.|||..-..-+-..+...|.+.|+.|+. ..+...+ .+.+... ...+.++-+++-+.+.+ ++++.+.+..
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-- 106 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVCDVRHLDEMVRLADEAFRLL-- 106 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHhC--
Confidence 357999999999999999999999998874 4454333 3333333 23444444444454443 3555665432
Q ss_pred CCceEEEEec
Q 008761 107 QRIPVIMMSA 116 (554)
Q Consensus 107 ~~iPIIVLSs 116 (554)
..+-+||-.+
T Consensus 107 g~id~lvnnA 116 (301)
T 3tjr_A 107 GGVDVVFSNA 116 (301)
T ss_dssp SSCSEEEECC
T ss_pred CCCCEEEECC
Confidence 4566776654
No 314
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=37.41 E-value=1.5e+02 Score=27.32 Aligned_cols=83 Identities=10% Similarity=0.079 Sum_probs=52.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHH---HHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQ---VIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~E---ALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
+...+|||..-..-+-..+...|.+.|+.|+ ...+... ..+.+... ...+.++.+++-+.+.+ ++++.+.+.
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~- 79 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKAE- 79 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHT-
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHH-
Confidence 3455899999999999999999999999887 4444433 33333333 24455544444455444 356666553
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
+..+-+|+..+
T Consensus 80 -~~~id~li~~A 90 (247)
T 3lyl_A 80 -NLAIDILVNNA 90 (247)
T ss_dssp -TCCCSEEEECC
T ss_pred -cCCCCEEEECC
Confidence 25667777665
No 315
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=37.04 E-value=1.8e+02 Score=27.71 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=54.1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~ 105 (554)
+.+..-+|||..-..-+-..+...|.+.|+.|.. ..+.+.+.+.+... ...+.++..++-+.+.+ ++++.+.+..
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 99 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL--GKDVFVFSANLSDRKSIKQLAEVAEREM- 99 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEeecCCHHHHHHHHHHHHHHc-
Confidence 3445568999999999999999999999998874 44555444444443 23455554445455444 3555555432
Q ss_pred CCCceEEEEec
Q 008761 106 LQRIPVIMMSA 116 (554)
Q Consensus 106 ~~~iPIIVLSs 116 (554)
..+-+||-.+
T Consensus 100 -g~iD~lvnnA 109 (266)
T 3grp_A 100 -EGIDILVNNA 109 (266)
T ss_dssp -TSCCEEEECC
T ss_pred -CCCCEEEECC
Confidence 4566776654
No 316
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=36.98 E-value=89 Score=29.29 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHHHHHhhCCCEEEEECC--H----HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 45 SDAVFSLLVKCSYQVTSVRS--P----RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~d--g----~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
...+.+.+.+.||.+..+.. . .+.++.+... .+|-||+--.- .+ -+.++.+.. ..+|||++..
T Consensus 32 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiIi~~~~--~~-~~~~~~l~~----~~iPvV~~~~ 100 (292)
T 3k4h_A 32 IRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGR--QIGGIILLYSR--EN-DRIIQYLHE----QNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTT--CCCEEEESCCB--TT-CHHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcC--CCCEEEEeCCC--CC-hHHHHHHHH----CCCCEEEECC
Confidence 33455566678998775442 2 2345555544 79998873211 11 256677765 4689998864
No 317
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=36.88 E-value=2.9e+02 Score=26.71 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEE
Q 008761 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVL 114 (554)
+...+...+...||.+..+. +.+ +.++.+... .+|-||+-- ....-+.++.+.. ..+|+|++
T Consensus 86 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdGiIi~~---~~~~~~~~~~l~~----~~iPvV~i 153 (344)
T 3kjx_A 86 VLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSW--RPSGVIIAG---LEHSEAARAMLDA----AGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTT--CCSEEEEEC---SCCCHHHHHHHHH----CSSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEEC---CCCCHHHHHHHHh----CCCCEEEE
Confidence 34455566667799877543 233 345555544 789888742 1112256666665 46899988
No 318
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=36.80 E-value=1.4e+02 Score=30.74 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=61.0
Q ss_pred HHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecC----CC-CCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 45 SDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVD----LP-MTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 45 r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~----MP-~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
.+.+..+-+..+. -|..+.+.++|...... ..|.|++.-+ +. +..-++++.++++.- ...+|||.-..-
T Consensus 218 ~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v-~~~ipVia~GGI 293 (368)
T 2nli_A 218 PRDIEEIAGHSGLPVFVKGIQHPEDADMAIKR---GASGIWVSNHGARQLYEAPGSFDTLPAIAERV-NKRVPIVFDSGV 293 (368)
T ss_dssp HHHHHHHHHHSSSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH-TTSSCEEECSSC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc---CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh-CCCCeEEEECCC
Confidence 3444444444443 33356788888777654 4898888542 11 234578888887642 126899988888
Q ss_pred CCHHHHHHHHHcCCCEEEe-CCC
Q 008761 118 DEVSVVVKCLRLGAADYLV-KPL 139 (554)
Q Consensus 118 ~d~e~~~eAL~aGA~DyL~-KP~ 139 (554)
.+...+.++|.+||+.+.. .|+
T Consensus 294 ~~g~D~~kalalGAd~V~iGr~~ 316 (368)
T 2nli_A 294 RRGEHVAKALASGADVVALGRPV 316 (368)
T ss_dssp CSHHHHHHHHHTTCSEEEECHHH
T ss_pred CCHHHHHHHHHcCCCEEEECHHH
Confidence 9999999999999999854 344
No 319
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=36.72 E-value=3e+02 Score=26.59 Aligned_cols=76 Identities=7% Similarity=0.181 Sum_probs=47.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKC-SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~-g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+||.|+.-.-.+-+.+.+.+... ++++..+-+..+-++.+... .+| |++|..-|. ...+.++...+ ..+|+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~--~~D-vvIDfT~p~-a~~~~~~~a~~----~g~~~ 72 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDG--NTE-VVIDFTHPD-VVMGNLEFLID----NGIHA 72 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHT--TCC-EEEECSCTT-THHHHHHHHHH----TTCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhcc--CCc-EEEEccChH-HHHHHHHHHHH----cCCCE
Confidence 47899987777777777777654 78877443211112222222 588 778888776 34666666554 45788
Q ss_pred EEEec
Q 008761 112 IMMSA 116 (554)
Q Consensus 112 IVLSs 116 (554)
|+-|.
T Consensus 73 VigTT 77 (245)
T 1p9l_A 73 VVGTT 77 (245)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 87654
No 320
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=36.51 E-value=1.5e+02 Score=25.21 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhCCCEEEEE--------CCHHHHHHHHHhcCCCce---EEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 42 SNSSDAVFSLLVKCSYQVTSV--------RSPRQVIDALNAEGSDID---LILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 42 ~~~r~~L~~lL~~~g~eV~~A--------~dg~EALe~L~~~~~~PD---LILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+..+..+..++......|.+- .-...|.++|... ..+ +...|+.. +-++...|+.......+|
T Consensus 3 ~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~--gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP 76 (121)
T 3gx8_A 3 TEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQ--GVDPAKFAAYNVLE----DPELREGIKEFSEWPTIP 76 (121)
T ss_dssp HHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHH--TBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHc--CCCcceEEEEEecC----CHHHHHHHHHHhCCCCCC
Confidence 456778888888876655533 2457788888776 344 77788753 234445554432347799
Q ss_pred EEEEecC--CCHHHHHHHHHc
Q 008761 111 VIMMSAQ--DEVSVVVKCLRL 129 (554)
Q Consensus 111 IIVLSs~--~d~e~~~eAL~a 129 (554)
.|++-+. ...+.+.+..+.
T Consensus 77 ~vfI~g~~iGG~d~l~~l~~~ 97 (121)
T 3gx8_A 77 QLYVNKEFIGGCDVITSMARS 97 (121)
T ss_dssp EEEETTEEEESHHHHHHHHHH
T ss_pred eEEECCEEEecHHHHHHHHHc
Confidence 9999763 334444443333
No 321
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=36.17 E-value=52 Score=36.79 Aligned_cols=94 Identities=9% Similarity=0.061 Sum_probs=58.9
Q ss_pred HHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-Cc-HHHHHHHHHhccCCCCceEEEEecCCCH-
Q 008761 47 AVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM-TK-GLKMLKYITRDKELQRIPVIMMSAQDEV- 120 (554)
Q Consensus 47 ~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~-mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~- 120 (554)
.+..+|+..||+|+.. .+ ++.++.+.+. .+|||.+-..+.. +. .-++++.|++.. +..|+|.+....
T Consensus 529 ~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e~--~adiv~lSsl~~~~~~~~~~v~~~Lk~aG----~~~V~vgG~P~~d 601 (637)
T 1req_B 529 FSSPVWHIAGIDTPQVEGGTT-AEIVEAFKKS--GAQVADLCSSAKVYAQQGLEVAKALKAAG----AKALYLSGAFKEF 601 (637)
T ss_dssp HHHHHHHHTTCBCCEEECCCH-HHHHHHHHHH--TCSEEEEECCHHHHHHHHHHHHHHHHHTT----CSEEEEESCGGGG
T ss_pred HHHHHHHhCCeeEEeCCCCCC-HHHHHHHHhc--CCCEEEEecccHHHHHHHHHHHHHHHhCC----CCeEEEeCCCCcc
Confidence 4555778889988732 34 8888888777 7999988765432 22 245777777754 233556663221
Q ss_pred -HHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008761 121 -SVVVKCLRLGAADYLVKPLRTNELLNLW 148 (554)
Q Consensus 121 -e~~~eAL~aGA~DyL~KP~~~eeL~~~L 148 (554)
+...+..+ |+++|+.--.+..+++..+
T Consensus 602 ~~~~~~~~~-G~D~~~~~g~~~~~~l~~l 629 (637)
T 1req_B 602 GDDAAEAEK-LIDGRLFMGMDVVDTLSST 629 (637)
T ss_dssp GGGHHHHHH-HCCCEECTTCCHHHHHHHH
T ss_pred chhhHHHHh-ccceEecCCcCHHHHHHHH
Confidence 11223344 9999998777776554443
No 322
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=35.86 E-value=1.1e+02 Score=29.07 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCHHHHHH---HHHHHhhCCCEEEEEC-----CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 40 NDSNSSDA---VFSLLVKCSYQVTSVR-----SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 40 Dd~~~r~~---L~~lL~~~g~eV~~A~-----dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
+++.+... +...+.+.||.+..+. ...+.++.+... .+|-||+--..... +.++.+.. ..+||
T Consensus 21 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiIi~~~~~~~---~~~~~l~~----~~iPv 91 (294)
T 3qk7_A 21 NNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETR--RVDALIVAHTQPED---FRLQYLQK----QNFPF 91 (294)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHT--CCSEEEECSCCSSC---HHHHHHHH----TTCCE
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcC--CCCEEEEeCCCCCh---HHHHHHHh----CCCCE
Confidence 45554444 4455667799876433 234566777665 78988874432222 56677765 46899
Q ss_pred EEEec
Q 008761 112 IMMSA 116 (554)
Q Consensus 112 IVLSs 116 (554)
|++..
T Consensus 92 V~~~~ 96 (294)
T 3qk7_A 92 LALGR 96 (294)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 98865
No 323
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=35.75 E-value=1.8e+02 Score=31.45 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=59.2
Q ss_pred HHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHHHhccC----CCCceEEEE
Q 008761 46 DAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKE----LQRIPVIMM 114 (554)
Q Consensus 46 ~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~Ir~~~~----~~~iPIIVL 114 (554)
+.|..+-+..+. -|..+.+.++|..+... ..|.|++.-+-. ....++++..+...-. ...+|||+-
T Consensus 333 ~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~ 409 (511)
T 1kbi_A 333 KDIEELKKKTKLPIVIKGVQRTEDVIKAAEI---GVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVD 409 (511)
T ss_dssp HHHHHHHHHCSSCEEEEEECSHHHHHHHHHT---TCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEE
T ss_pred HHHHHHHHHhCCcEEEEeCCCHHHHHHHHHc---CCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 334444443443 33356678888776654 589998854311 1234677777765421 136999998
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe-CCC
Q 008761 115 SAQDEVSVVVKCLRLGAADYLV-KPL 139 (554)
Q Consensus 115 Ss~~d~e~~~eAL~aGA~DyL~-KP~ 139 (554)
..-.....+.++|.+||+.... .|+
T Consensus 410 GGI~~g~Dv~kaLalGAdaV~iGr~~ 435 (511)
T 1kbi_A 410 GGVRRGTDVLKALCLGAKGVGLGRPF 435 (511)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 8889999999999999998844 454
No 324
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=35.62 E-value=77 Score=30.54 Aligned_cols=83 Identities=8% Similarity=0.055 Sum_probs=54.0
Q ss_pred HHhhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCcH-------HHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 51 LLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPMTKG-------LKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 51 lL~~~g~eV~~A~---dg~EALe~L~~~~~~PDLILLDi~MP~mDG-------lElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
.+++.|..+..+- +..+.++.+... ..+|+|++=.--|+..| ++-++++++.. ..++| .+.+--+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--~~~~I-~VdGGI~~ 184 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLNI-QVDGGLNI 184 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCEE-EEESSCCH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--cCCeE-EEECCCCH
Confidence 6677888776443 344555555441 03899877665565544 56667777653 24554 45666667
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008761 121 SVVVKCLRLGAADYLVK 137 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~K 137 (554)
+.+.++.++||+-++.=
T Consensus 185 ~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 185 ETTEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 88999999999998754
No 325
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=35.59 E-value=1.5e+02 Score=27.94 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=52.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-C------------H---HHHHHHHHhcCCCceEEEEecCCCCCcHH
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-S------------P---RQVIDALNAEGSDIDLILAEVDLPMTKGL 94 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-d------------g---~EALe~L~~~~~~PDLILLDi~MP~mDGl 94 (554)
..-+|||..-..-+-..+...|.+.|+.|+.+. + . +++...+... ...+.++.+++-+.+.+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHHHH
Confidence 445799999999999999999999999887542 2 2 2333333333 34555555555555554
Q ss_pred -HHHHHHHhccCCCCceEEEEec
Q 008761 95 -KMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 95 -ElLr~Ir~~~~~~~iPIIVLSs 116 (554)
++++.+.+.. ..+-+||-.+
T Consensus 87 ~~~~~~~~~~~--g~id~lv~nA 107 (287)
T 3pxx_A 87 SRELANAVAEF--GKLDVVVANA 107 (287)
T ss_dssp HHHHHHHHHHH--SCCCEEEECC
T ss_pred HHHHHHHHHHc--CCCCEEEECC
Confidence 4566665432 4566777654
No 326
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=35.49 E-value=1.3e+02 Score=28.60 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=39.3
Q ss_pred CHHHHHH---HHHHHhhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceE
Q 008761 41 DSNSSDA---VFSLLVKCSYQVTSVRSP------RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (554)
Q Consensus 41 d~~~r~~---L~~lL~~~g~eV~~A~dg------~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPI 111 (554)
++.+... +...+...||.+..+... .+.++.+... .+|-||+--.... -+.++.+.. ..+||
T Consensus 39 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~---~~~~~~l~~----~~iPv 109 (305)
T 3huu_A 39 NPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSK--SVDGFILLYSLKD---DPIEHLLNE----FKVPY 109 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTT--CCSEEEESSCBTT---CHHHHHHHH----TTCCE
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCCcCC---cHHHHHHHH----cCCCE
Confidence 4444443 444555679988755422 2345555554 7898887422111 256677765 46899
Q ss_pred EEEec
Q 008761 112 IMMSA 116 (554)
Q Consensus 112 IVLSs 116 (554)
|++..
T Consensus 110 V~i~~ 114 (305)
T 3huu_A 110 LIVGK 114 (305)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 98864
No 327
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=34.98 E-value=1.9e+02 Score=26.25 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHhhCCCEEE---EEC-----CH-----------HHHHHHHHhcCCCceEEEEecCCCCC-cHHHHHHHH
Q 008761 41 DSNSSDAVFSLLVKCSYQVT---SVR-----SP-----------RQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYI 100 (554)
Q Consensus 41 d~~~r~~L~~lL~~~g~eV~---~A~-----dg-----------~EALe~L~~~~~~PDLILLDi~MP~m-DGlElLr~I 100 (554)
+......+...|+..| .|. ... ++ +..++++. ..|+||..+.-|+. .++|+--..
T Consensus 17 ~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~----~aD~vvA~l~~~d~Gt~~EiG~A~ 91 (152)
T 4fyk_A 17 DQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQ----QADVVVAEVTQPSLGVGYELGRAV 91 (152)
T ss_dssp THHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHH----HCSEEEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHH----HCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3345567888888888 553 111 11 11234443 46999998885543 356665554
Q ss_pred HhccCCCCceEEEEecCCCHHHHHHHHHcCC---CEEEeCCCCHHHHHHHHHHHHH
Q 008761 101 TRDKELQRIPVIMMSAQDEVSVVVKCLRLGA---ADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA---~DyL~KP~~~eeL~~~L~~llr 153 (554)
. ...|||++..... ...+.+|-.|. ..|..+.+...+|...|.+.+.
T Consensus 92 a-----lgkPV~~l~~~~~-~~~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 92 A-----LGKPILCLFRPQS-GRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFE 141 (152)
T ss_dssp H-----TTCCEEEEECGGG-SCCCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHHC
T ss_pred H-----cCCeEEEEEeCCc-cchhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHHH
Confidence 3 4579999876331 11223344444 3477788776777777766543
No 328
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=34.93 E-value=1.7e+02 Score=28.40 Aligned_cols=33 Identities=9% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCC--CEEE
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCS--YQVT 60 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g--~eV~ 60 (554)
|.+.+++|||..-...+...|...|...| +.|.
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~ 54 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKII 54 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEE
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEE
Confidence 44556799999999999999888887766 5655
No 329
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=34.81 E-value=3.4e+02 Score=26.70 Aligned_cols=107 Identities=21% Similarity=0.150 Sum_probs=63.2
Q ss_pred CcEEEEEeCCH----HHHHHHHHHHhhCCC--EEEEEC-----CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHH
Q 008761 32 KVRILLCDNDS----NSSDAVFSLLVKCSY--QVTSVR-----SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYI 100 (554)
Q Consensus 32 kirVLIVDDd~----~~r~~L~~lL~~~g~--eV~~A~-----dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~I 100 (554)
.++++|+.+.+ .....+..+....+. .|.... +.++..+.+.. .|++++--.. ..-|+.+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-EGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-CSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-CCCccHHHHHH
Confidence 46778887763 334445554443332 233321 23455555543 4777764332 33466777776
Q ss_pred HhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008761 101 TRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~ 154 (554)
. ..+|||.. .. ....+.+..|...++.. +.++|.+.|..++..
T Consensus 337 a-----~G~PvI~~-~~---~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~ 379 (416)
T 2x6q_A 337 W-----KGKPVIGR-AV---GGIKFQIVDGETGFLVR--DANEAVEVVLYLLKH 379 (416)
T ss_dssp H-----TTCCEEEE-SC---HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHHC
T ss_pred H-----cCCCEEEc-cC---CCChhheecCCCeEEEC--CHHHHHHHHHHHHhC
Confidence 5 46787753 22 23455666788889886 889999988888753
No 330
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=34.77 E-value=1.6e+02 Score=27.60 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 44 SSDAVFSLLVKCSYQVTSVRS------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~d------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
+...+...+...||.+..+.. ..+.++.+... .+|-||+--.... + +.++.+.. ..+|||++..
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~-~--~~~~~l~~----~~iPvV~~~~ 95 (287)
T 3bbl_A 26 FLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSG--NVDGFVLSSINYN-D--PRVQFLLK----QKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTT--CCSEEEECSCCTT-C--HHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcC--CCCEEEEeecCCC-c--HHHHHHHh----cCCCEEEECC
Confidence 344556666778998775432 24567776655 7998887432222 1 55666654 4689988864
No 331
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=34.75 E-value=73 Score=27.75 Aligned_cols=81 Identities=10% Similarity=0.019 Sum_probs=44.3
Q ss_pred CcEEEEEeCCHHH----------HHHHHHHHhhCC--CEEEE-EC---CHHHHHHHHHhc--CCCceEEEEecCCCCC--
Q 008761 32 KVRILLCDNDSNS----------SDAVFSLLVKCS--YQVTS-VR---SPRQVIDALNAE--GSDIDLILAEVDLPMT-- 91 (554)
Q Consensus 32 kirVLIVDDd~~~----------r~~L~~lL~~~g--~eV~~-A~---dg~EALe~L~~~--~~~PDLILLDi~MP~m-- 91 (554)
+.+|+++.|+-.. ...|...|...+ +.|.- .- +..+.+..+... ..+||+|++-+..-+.
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~ 81 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELGANDGLR 81 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCHHHHHT
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEeecccCCC
Confidence 4588889888754 567778887654 34441 21 233344333221 0179999987643221
Q ss_pred --c-------HHHHHHHHHhccCCCCceEEEEec
Q 008761 92 --K-------GLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 92 --D-------GlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
+ =-++++.|++. ..+||+++.
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~----~~~vvl~~~ 111 (185)
T 3hp4_A 82 GFPVKKMQTNLTALVKKSQAA----NAMTALMEI 111 (185)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT----TCEEEEECC
T ss_pred CcCHHHHHHHHHHHHHHHHHc----CCeEEEEeC
Confidence 1 12355566553 456676663
No 332
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=34.62 E-value=2e+02 Score=29.02 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=43.5
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 60 ~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
+.+.+.+++.+.+.. .+|+|.||-. +--++-+.++... .+ ..|..|+.-+.+.+.+..+.|++-+
T Consensus 214 VEvdtlde~~eAl~a---GaD~I~LDn~----~~~~l~~av~~i~--~~-v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH---GARSVLLDNF----TLDMMRDAVRVTE--GR-AVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT---TCEEEEEESC----CHHHHHHHHHHHT--TS-EEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhC--CC-CeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 468899999988875 4899999963 3233322333221 22 4566777777777888888999655
No 333
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=34.56 E-value=35 Score=32.16 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=36.2
Q ss_pred CceEEEEecCCCCCc-------HHHHHHHHHhccC--CCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 78 DIDLILAEVDLPMTK-------GLKMLKYITRDKE--LQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 78 ~PDLILLDi~MP~mD-------GlElLr~Ir~~~~--~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..|.|+++-..|+.. +++.+++|++... ..++||++.-+-. .+.+.+++++||+.++.
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVA 206 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 468888887766543 3455566665320 0157776555433 56666788899998854
No 334
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=34.54 E-value=1.3e+02 Score=30.15 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=57.1
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 34 RILLCDNDSNS----SDAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 34 rVLIVDDd~~~----r~~L~~lL~~~g--~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
-+||-|++-.+ ...+...-+..+ .-.+.+.+.+++.+.+.. ..|+|++|-.-| .+-.++++.++... +
T Consensus 167 ~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~-~~~~~~v~~l~~~~--~ 240 (284)
T 1qpo_A 167 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAV-WQTQTAVQRRDSRA--P 240 (284)
T ss_dssp SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCH-HHHHHHHHHHHHHC--T
T ss_pred hhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHhhccC--C
Confidence 36666654332 223333333333 223477789999998865 489999997433 22234455555421 3
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
++ .|..|+--+.+.+.+..+.|++-+.
T Consensus 241 ~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 241 TV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp TC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred Ce-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 33 5667777777788888899987664
No 335
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=34.52 E-value=2.7e+02 Score=25.88 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
...+...+...||++..+. +.. +.++.+... ++|.||+-...+. .-.+.++.+.. ..+|+|++..
T Consensus 21 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 91 (290)
T 2fn9_A 21 AETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAA--GYDAIIFNPTDAD-GSIANVKRAKE----AGIPVFCVDR 91 (290)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCSCTT-TTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEecCChH-HHHHHHHHHHH----CCCeEEEEec
Confidence 3345556667899877543 333 345555544 7998887432221 11345666654 4679988864
No 336
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=34.47 E-value=75 Score=29.99 Aligned_cols=78 Identities=13% Similarity=0.270 Sum_probs=53.3
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecC----CCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHc-----C-CC
Q 008761 64 SPRQVIDALNAEGSDID-LILAEVD----LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL-----G-AA 132 (554)
Q Consensus 64 dg~EALe~L~~~~~~PD-LILLDi~----MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~a-----G-A~ 132 (554)
+..+....+.+. ..+ |++.++. +.+. .++++++|++. ..+|||....-...+.+.++++. | |+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~iPvia~GGI~~~~d~~~~~~~~~~~~G~ad 218 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIE---AEVKVLAAGGISSENSLKTAQKVHTETNGLLK 218 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHH---HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHhcccccCCeEe
Confidence 555655555544 567 4444542 2333 38899999875 47899998888888899999988 9 98
Q ss_pred EEEe------CCCCHHHHHHH
Q 008761 133 DYLV------KPLRTNELLNL 147 (554)
Q Consensus 133 DyL~------KP~~~eeL~~~ 147 (554)
.++. .+++..+++..
T Consensus 219 gv~vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 219 GVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp EEEECHHHHTTSSCHHHHHHH
T ss_pred EEEeeHHHHcCCCCHHHHHHH
Confidence 8754 46666665543
No 337
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=34.45 E-value=1.8e+02 Score=26.36 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=47.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHHHhcC--CCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ--VT-SVRSPRQVIDALNAEG--SDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e--V~-~A~dg~EALe~L~~~~--~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
..+|..||-++......+..+...|+. |. ...+..+.+..+.... ..+|+|++|... .+-..+++.+..
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~~~ 162 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEESLK 162 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHHHH
Confidence 468999999999999999998877642 43 5678877776664310 279999998742 223445555543
No 338
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=34.38 E-value=1.3e+02 Score=29.69 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=47.4
Q ss_pred HHHHHHHHhhCCCEEE--EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcH---------HHHHHHHHhccCCCCceEE
Q 008761 45 SDAVFSLLVKCSYQVT--SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKG---------LKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~--~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDG---------lElLr~Ir~~~~~~~iPII 112 (554)
...+...+.+.|+.++ .+. +..+-++.+.... ...+.+. .+.+..| .++++++++. ..+||+
T Consensus 133 ~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~--~gfiy~v-s~~G~TG~~~~~~~~~~~~v~~vr~~---~~~Pv~ 206 (271)
T 1ujp_A 133 DPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHA--TGFVYAV-SVTGVTGMRERLPEEVKDLVRRIKAR---TALPVA 206 (271)
T ss_dssp CHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTC--CSCEEEE-CC------------CCHHHHHHHHTT---CCSCEE
T ss_pred HHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhC--CCCEEEE-ecCcccCCCCCCCccHHHHHHHHHhh---cCCCEE
Confidence 3444555555565433 222 2234444444442 3344444 3444333 4788888864 478987
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
+=.+-.+.+.+.++ .||+..++=
T Consensus 207 vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 207 VGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp EESCCCSHHHHHHH--TTSSEEEEC
T ss_pred EEcCCCCHHHHHHh--cCCCEEEEC
Confidence 66666667777775 999999874
No 339
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=34.22 E-value=1.7e+02 Score=25.86 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=46.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC--CcHHHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY-QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~-eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~--mDGlElLr~Ir~ 102 (554)
..+|.-||-++...+..+..+...+. .+. ...|..+.+..+.. ..+|+|++|.-... .+-.++++.+..
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p~~~~~~~~~~~l~~~~~ 139 (189)
T 3p9n_A 67 AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPPYNVDSADVDAILAALGT 139 (189)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCCCCcchhhHHHHHHHHHh
Confidence 34899999999999998888876654 333 55677666543322 37999999854333 233456666655
No 340
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=34.13 E-value=1.6e+02 Score=28.96 Aligned_cols=83 Identities=8% Similarity=0.063 Sum_probs=49.1
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 33 VRILLCDNDSNS----SDAVFSLLVKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 33 irVLIVDDd~~~----r~~L~~lL~~~g~eV~~---A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
-+|.||-++... .+.+.+.|+..|.+|.. . .+....+..++.. .||+|++.. .+.+...+++.++
T Consensus 144 ~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~--~~dav~~~~--~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 144 AKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQA--GVEYVVHQN--VAGPVANILKDAK 219 (392)
T ss_dssp CEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHT--TCCEEEEES--CHHHHHHHHHHHH
T ss_pred CEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhc--CCCEEEEec--CcchHHHHHHHHH
Confidence 456555443332 23456667677876542 1 2456677777665 799999744 3445677888888
Q ss_pred hccCCCCceEEEEecCCCHH
Q 008761 102 RDKELQRIPVIMMSAQDEVS 121 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e 121 (554)
+.. ..+|++......+..
T Consensus 220 ~~g--~~~~~~~~~~~~~~~ 237 (392)
T 3lkb_A 220 RLG--LKMRHLGAHYTGGPD 237 (392)
T ss_dssp HTT--CCCEEEECGGGCSHH
T ss_pred HcC--CCceEEEecCcccHH
Confidence 765 456765544334443
No 341
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=33.99 E-value=2.7e+02 Score=25.98 Aligned_cols=81 Identities=9% Similarity=0.053 Sum_probs=51.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~i 109 (554)
..+|||..-..-+-..+...|.+.|+.|+ ...+.+.+.+.+... ...+.++.+++-+.+.+ ++++.+.+.. ..+
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~--g~i 83 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI--GPAAYAVQMDVTRQDSIDAAIAATVEHA--GGL 83 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHS--SSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCCceEEEeeCCCHHHHHHHHHHHHHHc--CCC
Confidence 45799999999999999999999999887 445655555554443 23344444444444443 3556665542 456
Q ss_pred eEEEEec
Q 008761 110 PVIMMSA 116 (554)
Q Consensus 110 PIIVLSs 116 (554)
-+|+-.+
T Consensus 84 d~lv~~A 90 (259)
T 4e6p_A 84 DILVNNA 90 (259)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 7776654
No 342
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=33.91 E-value=1.7e+02 Score=27.29 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCC-C-cHHHHHHHHHhccCCCCceEEEEe
Q 008761 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~-m-DGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
+...+.+.+.+.||.+..+. +.. +.++.+... .+|-||+--.-.. . ...++++.+.. ..+|||++.
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~~~ 106 (298)
T 3tb6_A 33 IIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQ--HIDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAMIN 106 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--CCSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHC--CCCEEEEecccccccCCcHHHHHHHHh----cCCCEEEEe
Confidence 34455666677899877543 232 345555555 7999888433221 1 23467777765 468999886
Q ss_pred c
Q 008761 116 A 116 (554)
Q Consensus 116 s 116 (554)
.
T Consensus 107 ~ 107 (298)
T 3tb6_A 107 A 107 (298)
T ss_dssp S
T ss_pred c
Confidence 4
No 343
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=33.82 E-value=1.1e+02 Score=28.55 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 46 DAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
..+...+...||.+..+. +.. +.++.+... .+|.||+-..-+. .-.++++.+.. ..+|||++...
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 98 (293)
T 3l6u_A 28 NAFKAEAKANKYEALVATSQNSRISEREQILEFVHL--KVDAIFITTLDDV-YIGSAIEEAKK----AGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHT--TCSEEEEECSCTT-TTHHHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHc--CCCEEEEecCChH-HHHHHHHHHHH----cCCCEEEecCC
Confidence 335555667799877443 232 455555555 7998888533222 12256777765 46899988654
No 344
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=33.68 E-value=51 Score=29.86 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=40.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~m 91 (554)
++|||..-...+-..|...|.+.|++|. ...+...+ ..+... ...++..|+.-+..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~-~~~~~~--~~~~~~~D~~d~~~ 57 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA-ADRLGA--TVATLVKEPLVLTE 57 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHTCT--TSEEEECCGGGCCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc-ccccCC--CceEEecccccccH
Confidence 3799999999999999999988899988 44555443 333222 57888888865543
No 345
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=33.42 E-value=2.2e+02 Score=26.39 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=53.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHHH---HHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhc
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRD 103 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg~EA---Le~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~ 103 (554)
.+..-.|||..-..-+-..+.+.|.+.|+.|+.+ .+.+.+ .+.+... ...+.++.+++-+.+.+ ++++.+.+.
T Consensus 6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3445689999999999999999999999988744 454333 2333333 34555555555555444 355566543
Q ss_pred cCCCCceEEEEec
Q 008761 104 KELQRIPVIMMSA 116 (554)
Q Consensus 104 ~~~~~iPIIVLSs 116 (554)
. ..+-+|+..+
T Consensus 84 ~--g~id~li~~A 94 (253)
T 3qiv_A 84 F--GGIDYLVNNA 94 (253)
T ss_dssp H--SCCCEEEECC
T ss_pred c--CCCCEEEECC
Confidence 2 4566776654
No 346
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=33.35 E-value=62 Score=30.90 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=51.1
Q ss_pred HHHHHhhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEecCCCCC-------cHHHHHHHHHhccC--CCCceEEEEe
Q 008761 48 VFSLLVKCSYQVT-SV--RSPRQVIDALNAEGSDIDLILAEVDLPMT-------KGLKMLKYITRDKE--LQRIPVIMMS 115 (554)
Q Consensus 48 L~~lL~~~g~eV~-~A--~dg~EALe~L~~~~~~PDLILLDi~MP~m-------DGlElLr~Ir~~~~--~~~iPIIVLS 115 (554)
+.+.+...|..+. .+ .+..+.++.+.. ..|.|++--..|+. .+++.+++|++... ...+||.+.-
T Consensus 104 ~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~---~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G 180 (230)
T 1tqj_A 104 TLCQIRELGKKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDG 180 (230)
T ss_dssp HHHHHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHHHHcCCcEEEEEeCCCcHHHHHHHHh---cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 4444455666655 33 344555554433 36777766555642 35677777776420 0167887776
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 008761 116 AQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 116 s~~d~e~~~eAL~aGA~DyL~K 137 (554)
+-.. +.+.++.++||+.++.=
T Consensus 181 GI~~-~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 181 GLKP-NNTWQVLEAGANAIVAG 201 (230)
T ss_dssp SCCT-TTTHHHHHHTCCEEEES
T ss_pred CcCH-HHHHHHHHcCCCEEEEC
Confidence 6443 66778889999999763
No 347
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=33.28 E-value=1.7e+02 Score=25.01 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=30.7
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
.++++.|++ ..++++++|+.........+-.+|...|+...
T Consensus 42 ~~~l~~l~~----~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 42 GIGIKLLQK----MGITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp HHHHHHHHT----TTCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHH----CCCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 478888876 45799999988776655556678888888543
No 348
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=33.28 E-value=1.1e+02 Score=30.51 Aligned_cols=76 Identities=21% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCcEEEEEeCC----HHHHHHHHHHHhhCCCEEEEECCHH--------------------------------------
Q 008761 29 DRSKVRILLCDND----SNSSDAVFSLLVKCSYQVTSVRSPR-------------------------------------- 66 (554)
Q Consensus 29 ~mskirVLIVDDd----~~~r~~L~~lL~~~g~eV~~A~dg~-------------------------------------- 66 (554)
...++||||+-.. -.-...|...|.+.|++|..+....
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPR 91 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCS
T ss_pred CCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCccccccc
Q ss_pred ----------------------HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEe
Q 008761 67 ----------------------QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 67 ----------------------EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
...+.++.. +||+|+.|. ...-|.-+.+.+. +|+|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pDlVv~d~--~~~~~~~~a~~~g-------iP~v~~~ 151 (398)
T 4fzr_A 92 EEKPLLEHIGRGYGRLVLRMRDEALALAERW--KPDLVLTET--YSLTGPLVAATLG-------IPWIEQS 151 (398)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEET--TCTHHHHHHHHHT-------CCEEEEC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEECc--cccHHHHHHHhhC-------CCEEEec
No 349
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=33.03 E-value=1.5e+02 Score=27.65 Aligned_cols=85 Identities=14% Similarity=0.032 Sum_probs=49.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~ 105 (554)
|.+...+|||..-..-+-..+...|.+.|++|+.+ .+.....+..........++.+|+ -+.+.+ ++++.+.+..
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~--~~~~~v~~~~~~~~~~~- 84 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADV--TSEKDVQTALALAKGKF- 84 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCT--TCHHHHHHHHHHHHHHH-
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCC--CCHHHHHHHHHHHHHHC-
Confidence 34455689999999999999999998889988744 333222222222211344444454 444443 3555555432
Q ss_pred CCCceEEEEec
Q 008761 106 LQRIPVIMMSA 116 (554)
Q Consensus 106 ~~~iPIIVLSs 116 (554)
..+-+||..+
T Consensus 85 -g~id~li~~A 94 (265)
T 2o23_A 85 -GRVDVAVNCA 94 (265)
T ss_dssp -SCCCEEEECC
T ss_pred -CCCCEEEECC
Confidence 3566666554
No 350
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=32.94 E-value=2.5e+02 Score=26.84 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccC
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~ 105 (554)
+.+....|||..-..-+-..+...|.+.|+.|+.+ .+.+.+.+...+. ...+..+.+.+-+.+.+ ++++.+.+..
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 99 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI--GSKAFGVRVDVSSAKDAESMVEKTTAKW- 99 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHc-
Confidence 44455689999999999999999999999988744 4554444444433 23344444444444443 3555555432
Q ss_pred CCCceEEEEec
Q 008761 106 LQRIPVIMMSA 116 (554)
Q Consensus 106 ~~~iPIIVLSs 116 (554)
..+-+||-.+
T Consensus 100 -g~iD~lv~nA 109 (277)
T 4dqx_A 100 -GRVDVLVNNA 109 (277)
T ss_dssp -SCCCEEEECC
T ss_pred -CCCCEEEECC
Confidence 4566776654
No 351
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=32.90 E-value=2.3e+02 Score=27.10 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=50.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~ 107 (554)
+..-.|||..-..-+-..+...|.+.|+.|+.+ .+.+.+.+.......+...+.+|+ -+.+.+ .+++.+.+.. .
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv--~~~~~v~~~~~~~~~~~--g 78 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDV--RSLQDQKRAAERCLAAF--G 78 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCT--TCHHHHHHHHHHHHHHH--S
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCC--CCHHHHHHHHHHHHHhc--C
Confidence 345579999999999999999999999988754 454444333333322344444454 344443 4556665432 4
Q ss_pred CceEEEEec
Q 008761 108 RIPVIMMSA 116 (554)
Q Consensus 108 ~iPIIVLSs 116 (554)
.+-+||-.+
T Consensus 79 ~iD~lvnnA 87 (281)
T 3zv4_A 79 KIDTLIPNA 87 (281)
T ss_dssp CCCEEECCC
T ss_pred CCCEEEECC
Confidence 566666554
No 352
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=32.71 E-value=2.5e+02 Score=27.07 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=55.0
Q ss_pred cEEEEEeCCHHHHHHHHHHH-hhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhcc
Q 008761 33 VRILLCDNDSNSSDAVFSLL-VKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL-~~~g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
..+++.+++......+.+.+ +..|.+|+. ..|....+..++.. .||+|++-. ...+...+++.+++..
T Consensus 145 ~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~--~~d~v~~~~--~~~~~~~~~~~~~~~g 220 (353)
T 4gnr_A 145 KVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGK--DFDAIVVPG--YYNEAGKIVNQARGMG 220 (353)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHTS--CCSEEECCS--CHHHHHHHHHHHHHTT
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc--CCCEEEEec--CcHHHHHHHHHHHHcC
Confidence 34566666554444454444 456766542 13567778888766 899998643 3446778888888765
Q ss_pred CCCCceEEEEecCCCHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQDEVSVVVKCL 127 (554)
Q Consensus 105 ~~~~iPIIVLSs~~d~e~~~eAL 127 (554)
...|++.............+.
T Consensus 221 --~~~~~~~~~~~~~~~~~~~~~ 241 (353)
T 4gnr_A 221 --IDKPIVGGDGFNGEEFVQQAT 241 (353)
T ss_dssp --CCSCEEECGGGCSHHHHHHHC
T ss_pred --CCCcEEEecccccchhhhhhh
Confidence 456776665566655554443
No 353
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=32.71 E-value=1.4e+02 Score=29.14 Aligned_cols=63 Identities=14% Similarity=0.291 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEe
Q 008761 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
+...+...+...||.+..+. +.. +.++.+... .+|-||+--. ....+.++.+.. ..+|+|++.
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~~---~~~~~~~~~l~~----~~iPvV~i~ 156 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRR--RPEAMVLSYD---GHTEQTIRLLQR----ASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--CCSEEEEECS---CCCHHHHHHHHH----CCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCC---CCCHHHHHHHHh----CCCCEEEEC
Confidence 33445556667899877543 232 445555555 7898887422 122356666665 468999883
No 354
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=32.57 E-value=1.3e+02 Score=29.83 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=66.4
Q ss_pred CcEEEEEeCCHH-----HHHHHHHHHhhCCCE---------EEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHH
Q 008761 32 KVRILLCDNDSN-----SSDAVFSLLVKCSYQ---------VTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLK 95 (554)
Q Consensus 32 kirVLIVDDd~~-----~r~~L~~lL~~~g~e---------V~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlE 95 (554)
.++++||.+.+. ....+.+++...|.. |.... +.++..+.+.. .|++++--. -+.-|+.
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~ 289 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLC 289 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcH
Confidence 456777765432 235566666555533 33222 35666666654 488887433 2344677
Q ss_pred HHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCC---------------EE--EeCCCCHHHHHHHHHHHHHH
Q 008761 96 MLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA---------------DY--LVKPLRTNELLNLWTHMWRR 154 (554)
Q Consensus 96 lLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~---------------Dy--L~KP~~~eeL~~~L~~llr~ 154 (554)
+++.+. ..+|||.. .. ....+.+..|.. ++ +..|.+.++|.+.| .++..
T Consensus 290 ~lEAma-----~G~PvI~s-~~---~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~ 355 (413)
T 3oy2_A 290 SAEGAV-----LGKPLIIS-AV---GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKD 355 (413)
T ss_dssp HHHHHT-----TTCCEEEE-CC---HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTS
T ss_pred HHHHHH-----cCCCEEEc-CC---CChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcC
Confidence 777764 56788753 22 234456666665 77 88889999999999 88754
No 355
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=32.39 E-value=97 Score=25.38 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 42 SNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 42 ~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
....+.+..++......+.+. .....+..+|... ....-..|+..-.-++.++.+.|........+|.|++-+
T Consensus 6 ~~~~~~~~~~i~~~~v~vy~~~~Cp~C~~~~~~L~~~--~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g 81 (113)
T 3rhb_A 6 SRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRL--GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCG 81 (113)
T ss_dssp CHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHHT--TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred HHHHHHHHHHHhcCCEEEEECCCChhHHHHHHHHHHc--CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECC
Confidence 445667788887776555533 3467788888776 445556676543335666666665533346789998854
No 356
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=32.30 E-value=2.1e+02 Score=27.23 Aligned_cols=31 Identities=6% Similarity=0.007 Sum_probs=26.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSV 62 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A 62 (554)
+.+|||..-.-.+-..|...|.+.|++|...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 32 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIIL 32 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4589999999999999999888889887743
No 357
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=32.27 E-value=1.7e+02 Score=29.18 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCC-----------------------CCCcHHHHHHHHHhccCCCCceEEEEecCCC
Q 008761 63 RSPRQVIDALNAEGSDIDLILAEVDL-----------------------PMTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (554)
Q Consensus 63 ~dg~EALe~L~~~~~~PDLILLDi~M-----------------------P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d 119 (554)
.+.++|..+. +. ..|.|++.-.- .+...++++.+++... ..+|||....-.+
T Consensus 193 ~~~e~a~~~~-~~--G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~--~~ipvia~GGI~~ 267 (332)
T 1vcf_A 193 LSREAALALR-DL--PLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVL--PHLPLVASGGVYT 267 (332)
T ss_dssp CCHHHHHHHT-TS--CCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHC--SSSCEEEESSCCS
T ss_pred CCHHHHHHHH-Hc--CCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhc--CCCeEEEECCCCC
Confidence 5667765443 33 58988875421 1234577788887642 3699999999999
Q ss_pred HHHHHHHHHcCCCEE-EeCCC
Q 008761 120 VSVVVKCLRLGAADY-LVKPL 139 (554)
Q Consensus 120 ~e~~~eAL~aGA~Dy-L~KP~ 139 (554)
...+.++|.+||+.+ +-.|+
T Consensus 268 ~~d~~kal~~GAd~V~igr~~ 288 (332)
T 1vcf_A 268 GTDGAKALALGADLLAVARPL 288 (332)
T ss_dssp HHHHHHHHHHTCSEEEECGGG
T ss_pred HHHHHHHHHhCCChHhhhHHH
Confidence 999999999999887 44454
No 358
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=32.25 E-value=2.2e+02 Score=25.79 Aligned_cols=69 Identities=14% Similarity=0.280 Sum_probs=46.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAEG--SDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~-~A~dg~EALe~L~~~~--~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
..+|..||-++......++.+...|. .|. ...+..+.+..+.... ..+|+|++|.. ..+-..+++.+..
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~ 167 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQ 167 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHHH
Confidence 45899999999999999988887664 343 5567777766654311 27999999864 2233445555543
No 359
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=32.00 E-value=72 Score=31.91 Aligned_cols=104 Identities=11% Similarity=0.139 Sum_probs=58.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
++||.||.--..-+......|... +++|+.+.+...+.+...... .+.+-+.+ + ++.+-.. +.+-
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~-~~~~~~~~------~----~~~ll~~---~~~D 67 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFK-EKGVNFTA------D----LNELLTD---PEIE 67 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHH-TTTCEEES------C----THHHHSC---TTCC
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhC-CCCCeEEC------C----HHHHhcC---CCCC
Confidence 689999997766554555656544 678763333222222222110 12322221 1 1223222 4566
Q ss_pred EEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008761 111 VIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (554)
Q Consensus 111 IIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~ 149 (554)
+|+++... ..+.+.+|+++|..=|+.||+. .++..+.++
T Consensus 68 ~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~ 110 (349)
T 3i23_A 68 LITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFA 110 (349)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHH
Confidence 67666543 3667889999999999999976 555554444
No 360
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=31.79 E-value=1.5e+02 Score=27.29 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=53.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHH---HHHHHHhcC-CCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQ---VIDALNAEG-SDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~E---ALe~L~~~~-~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
....|||..-..-+-..+...|.+.|+.|+. ..+... ..+.+.... ....++.+|+...+.+.+ ++++.+....
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~ 92 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEF 92 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhC
Confidence 4558999999999999999999999998874 445433 233333321 245566667765665554 3556665432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+||..+
T Consensus 93 --g~id~lv~nA 102 (247)
T 3i1j_A 93 --GRLDGLLHNA 102 (247)
T ss_dssp --SCCSEEEECC
T ss_pred --CCCCEEEECC
Confidence 4566776654
No 361
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=31.77 E-value=1.2e+02 Score=27.72 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=47.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~i 109 (554)
..+|||..-...+-..+...|.+.|++|.. ..+....-+..... ....++.+|+ -+.+.+ ++++.+.... ..+
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~--~~~~~~~~~~~~~~~~~--~~i 79 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL-EGALPLPGDV--REEGDWARAVAAMEEAF--GEL 79 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-TTCEEEECCT--TCHHHHHHHHHHHHHHH--SCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hhceEEEecC--CCHHHHHHHHHHHHHHc--CCC
Confidence 347999999999999999999889998874 44544333333222 1344444554 344443 3445554432 345
Q ss_pred eEEEEec
Q 008761 110 PVIMMSA 116 (554)
Q Consensus 110 PIIVLSs 116 (554)
-+|+-.+
T Consensus 80 d~li~~A 86 (234)
T 2ehd_A 80 SALVNNA 86 (234)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 5666554
No 362
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=31.70 E-value=3.7e+02 Score=26.13 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=54.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
+++|.||.--..-...+..+....+++++ .+. +.+.+.+..... ...-+.. +--++ | . ..+
T Consensus 1 ~~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~--~~~~~~~-------~~~~~---l-~----~~~ 63 (325)
T 2ho3_A 1 MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY--QNIQLFD-------QLEVF---F-K----SSF 63 (325)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGS--SSCEEES-------CHHHH---H-T----SSC
T ss_pred CeEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc--CCCeEeC-------CHHHH---h-C----CCC
Confidence 36888888765544444444433467765 444 444443333222 1111121 11122 2 1 345
Q ss_pred eEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHH
Q 008761 110 PVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLW 148 (554)
Q Consensus 110 PIIVLSs~~d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L 148 (554)
-+|+++.... .+.+..|+++|..=|+.||+. .++....+
T Consensus 64 D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~ 106 (325)
T 2ho3_A 64 DLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLI 106 (325)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHH
T ss_pred CEEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHH
Confidence 6676665433 567889999999999999984 44444433
No 363
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=31.39 E-value=2.5e+02 Score=30.38 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCCceEEEE-ecCCCCC-c--HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHH-cCCCEEEe---
Q 008761 65 PRQVIDALNAEGSDIDLILA-EVDLPMT-K--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR-LGAADYLV--- 136 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILL-Di~MP~m-D--GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~-aGA~DyL~--- 136 (554)
..+..+.+.+. ..+.||+ |+.-.++ . -++++++|.+. ..+|||.-..-.+.+.+.++++ .||+..+.
T Consensus 454 ~~e~a~~~~~~--Ga~~il~t~~~~dG~~~G~d~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a 528 (555)
T 1jvn_A 454 VWELTRACEAL--GAGEILLNCIDKDGSNSGYDLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGM 528 (555)
T ss_dssp HHHHHHHHHHT--TCCEEEECCGGGTTTCSCCCHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHH
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHH
Confidence 34444555444 4566554 5533222 2 37899999875 5789988777788889999998 89999864
Q ss_pred ---CCCCHHHHHHH
Q 008761 137 ---KPLRTNELLNL 147 (554)
Q Consensus 137 ---KP~~~eeL~~~ 147 (554)
.++...+++..
T Consensus 529 ~~~~~~~~~e~~~~ 542 (555)
T 1jvn_A 529 FHRGEFTVNDVKEY 542 (555)
T ss_dssp HHTTSCCHHHHHHH
T ss_pred HHcCCCCHHHHHHH
Confidence 36677776654
No 364
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=31.37 E-value=83 Score=30.28 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=56.2
Q ss_pred HHHHhhCCCE--EEEECCHHHHHHHHHhcCCCceEEEE------ecCCCCCcHHHHHHHHHhccCCCC-ceEEEEecCCC
Q 008761 49 FSLLVKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILA------EVDLPMTKGLKMLKYITRDKELQR-IPVIMMSAQDE 119 (554)
Q Consensus 49 ~~lL~~~g~e--V~~A~dg~EALe~L~~~~~~PDLILL------Di~MP~mDGlElLr~Ir~~~~~~~-iPIIVLSs~~d 119 (554)
.+.|...|+. +...-+..+|+...+.. .+.|-- |+ +.||+++++.|........ -..|+..+..+
T Consensus 95 ~~~L~~~GI~vn~TlifS~~Qa~~Aa~AG---a~yISPfvgRi~d~---~~dG~~~v~~i~~~~~~~~~~t~ilaAS~R~ 168 (212)
T 3r8r_A 95 VRALTDLGIKTNVTLIFNANQALLAARAG---ATYVSPFLGRLDDI---GHNGLDLISEVKQIFDIHGLDTQIIAASIRH 168 (212)
T ss_dssp HHHHHHTTCCEEEEEECSHHHHHHHHHHT---CSEEEEBHHHHHHT---TSCHHHHHHHHHHHHHHHTCCCEEEEBSCCS
T ss_pred HHHHHHCCCcEEEEEeCCHHHHHHHHHcC---CeEEEeccchhhhc---CCChHHHHHHHHHHHHHcCCCCEEEEecCCC
Confidence 3455667764 45667888888877664 455532 44 5688888888876422112 34566677888
Q ss_pred HHHHHHHHHcCCCEEEeCC
Q 008761 120 VSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 120 ~e~~~eAL~aGA~DyL~KP 138 (554)
...+.+|..+|++-.-.-|
T Consensus 169 ~~~v~~~a~~G~d~~Tip~ 187 (212)
T 3r8r_A 169 PQHVTEAALRGAHIGTMPL 187 (212)
T ss_dssp HHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHcCCCEEEcCH
Confidence 9999999999999654433
No 365
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=31.32 E-value=2.3e+02 Score=25.68 Aligned_cols=83 Identities=7% Similarity=0.029 Sum_probs=49.5
Q ss_pred CCcEEEEEeCCHHHHHH----HHHHHhhCCCEEE-EEC---CHHHHHHHHHhc---CCCceEEEEecCCCCCc-------
Q 008761 31 SKVRILLCDNDSNSSDA----VFSLLVKCSYQVT-SVR---SPRQVIDALNAE---GSDIDLILAEVDLPMTK------- 92 (554)
Q Consensus 31 skirVLIVDDd~~~r~~----L~~lL~~~g~eV~-~A~---dg~EALe~L~~~---~~~PDLILLDi~MP~mD------- 92 (554)
...+|+++.|+-..... +...|. ++.|. ..- +..+.+..+... ..+||+|++-+...+..
T Consensus 37 ~~~~i~~~GDSit~g~~~~~~~~~~l~--~~~v~n~g~~G~t~~~~~~~~~~~~l~~~~pd~vvi~~G~ND~~~~~~~~~ 114 (232)
T 1es9_A 37 KEPEVVFIGDSLVQLMHQCEIWRELFS--PLHALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVT 114 (232)
T ss_dssp CCCSEEEEESHHHHTHHHHSCHHHHTG--GGCEEEEECTTCCHHHHHHHHHTTTTTTCCCSEEEEECCTTCTTSCHHHHH
T ss_pred CCCCEEEEechHhhccCccccHHHHCC--CCceEEeecccccHHHHHHHHhcCccccCCCCEEEEEeecCCCCCCHHHHH
Confidence 35789999999876533 334443 34443 222 344555555431 23799999977655432
Q ss_pred --HHHHHHHHHhccCCCCceEEEEecC
Q 008761 93 --GLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 93 --GlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
=.++++.|++.. +..+||+++-.
T Consensus 115 ~~l~~~i~~l~~~~--p~~~ii~~~~~ 139 (232)
T 1es9_A 115 GGIKAIVQLVNERQ--PQARVVVLGLL 139 (232)
T ss_dssp HHHHHHHHHHHHHS--TTCEEEEECCC
T ss_pred HHHHHHHHHHHHHC--CCCeEEEecCC
Confidence 124666666643 56788888754
No 366
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=31.22 E-value=1.5e+02 Score=30.46 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
.+.++.+.+. .+|+|.+|........ ++.+++|++. ..+|||+ ..-...+.+..+.++||+....
T Consensus 107 ~e~a~~l~ea--Gad~I~ld~a~G~~~~~~~~i~~i~~~---~~~~Viv-g~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSK---MNIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHT--TCSEEEECCSCCSBHHHHHHHHHHHHH---CCCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CcCeEEEeCCCCCcHHHHHHHHHHHHh---cCCcEEE-ccCCCHHHHHHHHHcCcCEEEE
Confidence 4555555444 6999999876543333 4677888764 3678776 2234677888999999988876
No 367
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=30.58 E-value=1.2e+02 Score=31.56 Aligned_cols=105 Identities=8% Similarity=0.146 Sum_probs=58.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEC-CHHHHHHHHHhcCCCce--EE-EEecCCCCCcHHHHHHHHHh
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDID--LI-LAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~-~g~eV~-~A~-dg~EALe~L~~~~~~PD--LI-LLDi~MP~mDGlElLr~Ir~ 102 (554)
.|.+++|.||.--..-+..+...|.. .+++++ .+. +.+.+.+...... .+. +. .-|+ +.+-.
T Consensus 80 ~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g-~~~~~~~~~~~~-----------~~ll~ 147 (433)
T 1h6d_A 80 EDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYG-VDPRKIYDYSNF-----------DKIAK 147 (433)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTT-CCGGGEECSSSG-----------GGGGG
T ss_pred CCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhC-CCcccccccCCH-----------HHHhc
Confidence 46679999999865544244444444 367765 444 4444443333321 111 11 1111 11222
Q ss_pred ccCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHH
Q 008761 103 DKELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLW 148 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L 148 (554)
. ..+-+|+++... ..+.+..|+++|..=|+.||+. .++....+
T Consensus 148 ~---~~vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~ 194 (433)
T 1h6d_A 148 D---PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMI 194 (433)
T ss_dssp C---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHH
T ss_pred C---CCCCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHH
Confidence 1 346677776543 3667889999999889999985 44544433
No 368
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=30.56 E-value=88 Score=30.19 Aligned_cols=107 Identities=10% Similarity=0.037 Sum_probs=63.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecC---------CCCCcHHHHHHHH
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVD---------LPMTKGLKMLKYI 100 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~--~A~dg~EALe~L~~~~~~PDLILLDi~---------MP~mDGlElLr~I 100 (554)
.++++|+.+.+ ....+.++....+-.|. -.-+..+..+.+.. .|++++-.. ..+.-|+.+++.+
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAm 262 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAA 262 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHH
Confidence 35677777643 23344444433222233 22345555666653 477776443 1234467777776
Q ss_pred HhccCCCCceEEEEecCCCHHHHHHHHHc--CCCEEEeCCCCHHHHHHHHHHHHH
Q 008761 101 TRDKELQRIPVIMMSAQDEVSVVVKCLRL--GAADYLVKPLRTNELLNLWTHMWR 153 (554)
Q Consensus 101 r~~~~~~~iPIIVLSs~~d~e~~~eAL~a--GA~DyL~KP~~~eeL~~~L~~llr 153 (554)
. ..+|||.. .... ..+.+.. |...++..| +.++|.+.|..++.
T Consensus 263 a-----~G~PvI~s-~~~~---~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 263 V-----SGTPVVGT-GNGC---LAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp H-----TTCCEEEC-CTTT---HHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred h-----cCCCEEEc-CCCC---hHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 5 46788743 3222 4456666 778899999 99999998887754
No 369
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=30.53 E-value=1.4e+02 Score=29.10 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=20.5
Q ss_pred CCcEEEEEeCCH--------HHHHHHHHHHhhCCCEEEE
Q 008761 31 SKVRILLCDNDS--------NSSDAVFSLLVKCSYQVTS 61 (554)
Q Consensus 31 skirVLIVDDd~--------~~r~~L~~lL~~~g~eV~~ 61 (554)
.+++||+|-... .....|...|.+.|++|..
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v 57 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSV 57 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 467999998642 3445567777778988763
No 370
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=30.50 E-value=1.2e+02 Score=30.52 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCc-HHHHHHHHHhccCCCCceEEEEecCCCH-------------HHHHH
Q 008761 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEV-------------SVVVK 125 (554)
Q Consensus 60 ~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~-------------e~~~e 125 (554)
+++.+.+.|+...+....+..|. -++..++.. +..+++.+++. ..+||.+|...... +.+..
T Consensus 44 vc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~---~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~ 119 (287)
T 3iwp_A 44 VCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQS---VQIPVFVMIRPRGGDFLYSDREIEVMKADIRL 119 (287)
T ss_dssp EEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTT---CCSCEEEECCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHh---cCCCeEEEEecCCCCcccCHHHHHHHHHHHHH
Q ss_pred HHHcCCCEEEe
Q 008761 126 CLRLGAADYLV 136 (554)
Q Consensus 126 AL~aGA~DyL~ 136 (554)
+.++||+.++.
T Consensus 120 ~~~~GAdGvVf 130 (287)
T 3iwp_A 120 AKLYGADGLVF 130 (287)
T ss_dssp HHHTTCSEEEE
T ss_pred HHHcCCCEEEE
No 371
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=30.44 E-value=2.1e+02 Score=26.96 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHH----HHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVID----ALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRD 103 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe----~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~ 103 (554)
+..-+|||..-..-+-..+...|.+.|+.|+. ..+..+..+ .+... ...+.++.+.+-+.+.+ ++++.+...
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 104 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESDFIEAIQTIVQS 104 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 34457999999999999999999999998874 443333332 33333 34555555555554443 456666543
Q ss_pred cCCCCceEEEEec
Q 008761 104 KELQRIPVIMMSA 116 (554)
Q Consensus 104 ~~~~~iPIIVLSs 116 (554)
. ..+-+|+..+
T Consensus 105 ~--g~id~li~nA 115 (271)
T 4iin_A 105 D--GGLSYLVNNA 115 (271)
T ss_dssp H--SSCCEEEECC
T ss_pred c--CCCCEEEECC
Confidence 2 4566776654
No 372
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=30.44 E-value=87 Score=32.00 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=48.5
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHH
Q 008761 33 VRILLCDNDSN-----SSDAVFSLLVKCSYQVTSVR---------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLK 98 (554)
Q Consensus 33 irVLIVDDd~~-----~r~~L~~lL~~~g~eV~~A~---------dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr 98 (554)
-|+|||-|... ..+.+...|...|+++..+. +..++++.+++. ++|+||- +.+..-+++.+
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~IIa---vGGGsv~D~AK 115 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRND--SFDFVVG---LGGGSPMDFAK 115 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTS--CCSEEEE---EESHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhc--CCCEEEE---eCChHHHHHHH
Confidence 48888887733 34677778887787654332 245566666554 7898883 34545566666
Q ss_pred HHHhccCC---------------CCceEEEEec
Q 008761 99 YITRDKEL---------------QRIPVIMMSA 116 (554)
Q Consensus 99 ~Ir~~~~~---------------~~iPIIVLSs 116 (554)
.+...... +.+|+|.|-.
T Consensus 116 ~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 148 (371)
T 1o2d_A 116 AVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPT 148 (371)
T ss_dssp HHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEEC
T ss_pred HHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeC
Confidence 65543211 4678887743
No 373
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=30.36 E-value=2e+02 Score=27.64 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=51.7
Q ss_pred cEEEEE-eCCHHHH---HHHHHHHhhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 33 VRILLC-DNDSNSS---DAVFSLLVKCSYQVT---SV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 33 irVLIV-DDd~~~r---~~L~~lL~~~g~eV~---~A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
-+|.+| +|+...+ +.+...|...|.++. .. .+....++.+... .||+|++.... .+...+++.++
T Consensus 140 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~--~~d~i~~~~~~--~~a~~~~~~~~ 215 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDE--APQAIYLAMAY--EDAAPFLRALR 215 (358)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHH--CCSEEEEESCH--HHHHHHHHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhc--CCCEEEEccCc--hHHHHHHHHHH
Confidence 355555 4444433 345566677787654 12 3566777777665 79999986432 24567888888
Q ss_pred hccCCCCceEEEEecCCCHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVV 123 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~ 123 (554)
+.. ..+|||...........
T Consensus 216 ~~g--~~~p~~~~~~~~~~~~~ 235 (358)
T 3hut_A 216 ARG--SALPVYGSSALYSPKFI 235 (358)
T ss_dssp HTT--CCCCEEECGGGCSHHHH
T ss_pred HcC--CCCcEEecCcccCHHHH
Confidence 765 46787655554554433
No 374
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=30.26 E-value=2.2e+02 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=19.6
Q ss_pred cEEEEEeCCHH-H---HHHHHHHHhhCCCEEEEEC
Q 008761 33 VRILLCDNDSN-S---SDAVFSLLVKCSYQVTSVR 63 (554)
Q Consensus 33 irVLIVDDd~~-~---r~~L~~lL~~~g~eV~~A~ 63 (554)
+|||++-...- . ...|.+.|.+.|++|..+.
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~ 41 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLG 41 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEe
Confidence 68888865421 1 1246667777788887543
No 375
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=30.20 E-value=1.8e+02 Score=24.10 Aligned_cols=72 Identities=11% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 42 SNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 42 ~~~r~~L~~lL~~~g~eV~~A---~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
......+..++......|.+. .....|..+|... ....-..|+..- -++.++.+.|........+|.|++-+
T Consensus 4 ~~~~~~~~~~i~~~~v~vy~~~~Cp~C~~ak~~L~~~--~i~~~~~dvd~~-~~~~~~~~~l~~~~g~~tvP~vfi~g 78 (114)
T 3h8q_A 4 EELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSL--GVECNVLELDQV-DDGARVQEVLSEITNQKTVPNIFVNK 78 (114)
T ss_dssp HHHHHHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHT--TCCCEEEETTTS-TTHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred HHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHc--CCCcEEEEecCC-CChHHHHHHHHHHhCCCccCEEEECC
Confidence 445677888887776666543 3467788888776 344556666542 24555555554333347799999854
No 376
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=30.19 E-value=1.2e+02 Score=30.44 Aligned_cols=98 Identities=7% Similarity=0.073 Sum_probs=55.2
Q ss_pred CcCCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccC
Q 008761 26 GFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (554)
Q Consensus 26 ~~~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~ 105 (554)
..|.-.++||||+.- -.+...+...|.. .++|..+.-..+.++.+.. ....+-+|+. |--++.+.|..
T Consensus 10 ~~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---~~~~~~~d~~----d~~~l~~~~~~--- 77 (365)
T 3abi_A 10 HHIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---FATPLKVDAS----NFDKLVEVMKE--- 77 (365)
T ss_dssp ------CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---TSEEEECCTT----CHHHHHHHHTT---
T ss_pred ccccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---cCCcEEEecC----CHHHHHHHHhC---
Confidence 344556789999987 7778888888865 4788766544555566543 3455556643 33233333332
Q ss_pred CCCceEEEEec--CCCHHHHHHHHHcCCCEEEeCCC
Q 008761 106 LQRIPVIMMSA--QDEVSVVVKCLRLGAADYLVKPL 139 (554)
Q Consensus 106 ~~~iPIIVLSs--~~d~e~~~eAL~aGA~DyL~KP~ 139 (554)
. -+|+.+. .-....+..|+++|.. |+.--+
T Consensus 78 -~--DvVi~~~p~~~~~~v~~~~~~~g~~-yvD~s~ 109 (365)
T 3abi_A 78 -F--ELVIGALPGFLGFKSIKAAIKSKVD-MVDVSF 109 (365)
T ss_dssp -C--SEEEECCCGGGHHHHHHHHHHHTCE-EEECCC
T ss_pred -C--CEEEEecCCcccchHHHHHHhcCcc-eEeeec
Confidence 2 3443332 3345677788999974 654333
No 377
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Probab=30.19 E-value=2.1e+02 Score=26.53 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=50.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCE-EEE-ECCH-HHHHHHHHhcCCCceEEEEecCCCCC-cHH-HHHHHHHhcc
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQ-VTS-VRSP-RQVIDALNAEGSDIDLILAEVDLPMT-KGL-KMLKYITRDK 104 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~e-V~~-A~dg-~EALe~L~~~~~~PDLILLDi~MP~m-DGl-ElLr~Ir~~~ 104 (554)
+...+|||..-..-+-..+...|.+.|+. |+. ..+. .+.++.+........+.++-+++-+. +.+ ++++.+.+..
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence 44568999999999999999999888985 653 3432 24555554431112444443444443 333 4555555432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+||-.+
T Consensus 83 --g~id~lv~~A 92 (254)
T 1sby_A 83 --KTVDILINGA 92 (254)
T ss_dssp --SCCCEEEECC
T ss_pred --CCCCEEEECC
Confidence 3566666654
No 378
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=30.11 E-value=2.1e+02 Score=27.83 Aligned_cols=64 Identities=8% Similarity=0.099 Sum_probs=36.0
Q ss_pred HHHHHHhhCCCEEEEEC---CHHH---HHHHHHhcCCCceEEEEecCCCCC-cHHHHHHHHHhccCCCCceEEEEecC
Q 008761 47 AVFSLLVKCSYQVTSVR---SPRQ---VIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 47 ~L~~lL~~~g~eV~~A~---dg~E---ALe~L~~~~~~PDLILLDi~MP~m-DGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
.+.+.++..||.+.... +... .++.+.....++|.||+- |.. ...++++++.. ..+|||++...
T Consensus 25 g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~---~~~~~~~~~~~~~~~----~giPvV~~~~~ 95 (350)
T 3h75_A 25 FMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLV---NEQYVAPQILRLSQG----SGIKLFIVNSP 95 (350)
T ss_dssp HHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEE---CCSSHHHHHHHHHTT----SCCEEEEEESC
T ss_pred HHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEe---CchhhHHHHHHHHHh----CCCcEEEEcCC
Confidence 34445556688876433 3322 333333310279998883 322 34456666654 57899988753
No 379
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=30.11 E-value=55 Score=29.92 Aligned_cols=51 Identities=25% Similarity=0.226 Sum_probs=32.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH---HHHHHHHHhcCCCceEEEE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSP---RQVIDALNAEGSDIDLILA 84 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg---~EALe~L~~~~~~PDLILL 84 (554)
++|+|||.-..+...+.+.|+..|+++....+. ++..+.+... ..+++||+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEEC
Confidence 479999966567777888898889887755543 3333333221 13556665
No 380
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=30.06 E-value=1.1e+02 Score=29.81 Aligned_cols=85 Identities=9% Similarity=0.020 Sum_probs=51.1
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHhhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 33 VRILLCD-NDSN---SSDAVFSLLVKCSYQVT---SV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 33 irVLIVD-Dd~~---~r~~L~~lL~~~g~eV~---~A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
-+|.||. |+.. ..+.+.+.|+..|.+|. .. .+....+..+... .||+|++... ..+...+++.++
T Consensus 160 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~--~~dav~~~~~--~~~a~~~~~~~~ 235 (386)
T 3sg0_A 160 KKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIAT--KPDAVFIASA--GTPAVLPQKALR 235 (386)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHT--CCSEEEEECC--SGGGHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhc--CCCEEEEecC--cchHHHHHHHHH
Confidence 3555554 4443 23445566666677653 22 3556677777665 7999988543 345778888888
Q ss_pred hccCCCCceEEEEecCCCHHHH
Q 008761 102 RDKELQRIPVIMMSAQDEVSVV 123 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs~~d~e~~ 123 (554)
+.. ...|+|......+.+..
T Consensus 236 ~~g--~~~~~~~~~~~~~~~~~ 255 (386)
T 3sg0_A 236 ERG--FKGAIYQTHGVATEEFI 255 (386)
T ss_dssp HTT--CCSEEECCGGGCSHHHH
T ss_pred HcC--CCCcEEeccccCCHHHH
Confidence 765 34676655555554443
No 381
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=30.03 E-value=1.6e+02 Score=29.47 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR 63 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~ 63 (554)
++.+|||+..... ...+...+...|++|..+.
T Consensus 10 ~~~~ili~g~g~~-~~~~~~a~~~~G~~v~~~~ 41 (391)
T 1kjq_A 10 AATRVMLLGSGEL-GKEVAIECQRLGVEVIAVD 41 (391)
T ss_dssp TCCEEEEESCSHH-HHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHcCCEEEEEE
Confidence 4579999987654 4456666777899877544
No 382
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=30.03 E-value=1.2e+02 Score=29.41 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHhh-CCCEEEE------E--CCHHHHHHHHHhcCCCceEEEEecCCC---CCcHHHHHHHHHhccCCCC
Q 008761 41 DSNSSDAVFSLLVK-CSYQVTS------V--RSPRQVIDALNAEGSDIDLILAEVDLP---MTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 41 d~~~r~~L~~lL~~-~g~eV~~------A--~dg~EALe~L~~~~~~PDLILLDi~MP---~mDGlElLr~Ir~~~~~~~ 108 (554)
.......+++++.. .|..|+. + .+..+|+++|... .++=||..=.-+ -.+|++.|++|.+.. ..
T Consensus 102 g~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~l--Gv~rILTSG~~~~~~a~~g~~~L~~Lv~~a--~~ 177 (224)
T 2bdq_A 102 NHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVAL--GFTRILLHGSSNGEPIIENIKHIKALVEYA--NN 177 (224)
T ss_dssp SSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHT--TCCEEEECSCSSCCCGGGGHHHHHHHHHHH--TT
T ss_pred CCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHc--CCCEEECCCCCCCCcHHHHHHHHHHHHHhh--CC
Confidence 33445556666643 3555542 5 7889999999987 688888865444 478999999997643 22
Q ss_pred ceEEEEecCCCHHHHHHHH-HcCCCEEEe
Q 008761 109 IPVIMMSAQDEVSVVVKCL-RLGAADYLV 136 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL-~aGA~DyL~ 136 (554)
-..||..+--..+.+.+.+ ..|+..|-.
T Consensus 178 ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~ 206 (224)
T 2bdq_A 178 RIEIMVGGGVTAENYQYICQETGVKQAHG 206 (224)
T ss_dssp SSEEEECSSCCTTTHHHHHHHHTCCEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhhCCCEEcc
Confidence 2445554433333444444 478888843
No 383
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=29.90 E-value=2.6e+02 Score=27.29 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=55.9
Q ss_pred HHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC-C--CCCcHHHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 45 SDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD-L--PMTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~-M--P~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
...|.....+.|.++. .+.+.+|+...+... .+|+|-+... + -..| ++...+|...- ...+++|.-++-...
T Consensus 139 l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~--g~~iIGinnr~l~t~~~d-~~~~~~l~~~i-p~~~~vIaEsGI~t~ 214 (251)
T 1i4n_A 139 IKEIYEAAEELGMDSLVEVHSREDLEKVFSVI--RPKIIGINTRDLDTFEIK-KNVLWELLPLV-PDDTVVVAESGIKDP 214 (251)
T ss_dssp HHHHHHHHHTTTCEEEEEECSHHHHHHHHTTC--CCSEEEEECBCTTTCCBC-TTHHHHHGGGS-CTTSEEEEESCCCCG
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CCCEEEEeCcccccCCCC-HHHHHHHHHhC-CCCCEEEEeCCCCCH
Confidence 3334444456788765 889999988777541 3788866542 1 1222 45555555432 134566666666778
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008761 121 SVVVKCLRLGAADYLVK 137 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~K 137 (554)
+.+.++.++ |+.+|.-
T Consensus 215 edv~~~~~~-a~avLVG 230 (251)
T 1i4n_A 215 RELKDLRGK-VNAVLVG 230 (251)
T ss_dssp GGHHHHTTT-CSEEEEC
T ss_pred HHHHHHHHh-CCEEEEc
Confidence 889999999 9999753
No 384
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=29.81 E-value=1.8e+02 Score=28.82 Aligned_cols=83 Identities=23% Similarity=0.267 Sum_probs=49.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCH--------HHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHH
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSP--------RQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKY 99 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg--------~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~ 99 (554)
|....|||..-+.-+-..+...|.+.|+.|+ ++.+. ++..+.+... ..++.++.+++-+.+.+ ++++.
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~--~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN--DVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHH
Confidence 4455789999999999999999999999887 33331 2222333333 23455554444454443 35566
Q ss_pred HHhccCCCCceEEEEec
Q 008761 100 ITRDKELQRIPVIMMSA 116 (554)
Q Consensus 100 Ir~~~~~~~iPIIVLSs 116 (554)
+.+.. ..+-+||-.+
T Consensus 81 ~~~~~--g~iD~lVnnA 95 (324)
T 3u9l_A 81 IIGED--GRIDVLIHNA 95 (324)
T ss_dssp HHHHH--SCCSEEEECC
T ss_pred HHHHc--CCCCEEEECC
Confidence 65432 4566776654
No 385
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=29.81 E-value=91 Score=30.25 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=39.3
Q ss_pred ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCC--C--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 008761 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD--E--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTHM 151 (554)
Q Consensus 79 PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~--d--~e~~~eAL~aGA~DyL~KP~~--~eeL~~~L~~l 151 (554)
.|++++-- + |..+++.+. ..+|||+..... + ........+.|. +++..|-+ .++|.+.|..+
T Consensus 255 ad~~v~~s---g--~~~~~EAma-----~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 255 ADVVVCRS---G--ALTVSEIAA-----AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CSEEEECC---C--HHHHHHHHH-----HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CCEEEECC---c--hHHHHHHHH-----hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 36666532 2 777777775 357888664321 1 112334556777 99998865 88888888765
No 386
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.81 E-value=1.1e+02 Score=29.08 Aligned_cols=68 Identities=9% Similarity=0.133 Sum_probs=39.8
Q ss_pred CCHHHHHH---HHHHHhhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 40 NDSNSSDA---VFSLLVKCSYQVTSVRSP------RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 40 Dd~~~r~~---L~~lL~~~g~eV~~A~dg------~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
+++.+... +...+.+.||.+..+... .+.++.+... .+|-||+--.. .+ -++++.+.. ..+|
T Consensus 23 ~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~~~--~~-~~~~~~l~~----~~iP 93 (295)
T 3hcw_A 23 LNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQR--MVDAFILLYSK--EN-DPIKQMLID----ESMP 93 (295)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTT--CCSEEEESCCC--TT-CHHHHHHHH----TTCC
T ss_pred cChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhC--CcCEEEEcCcc--cC-hHHHHHHHh----CCCC
Confidence 45554444 455556779988755421 2345555554 78988874221 11 256666664 4689
Q ss_pred EEEEec
Q 008761 111 VIMMSA 116 (554)
Q Consensus 111 IIVLSs 116 (554)
||++..
T Consensus 94 vV~i~~ 99 (295)
T 3hcw_A 94 FIVIGK 99 (295)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 998864
No 387
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=29.80 E-value=1.1e+02 Score=30.82 Aligned_cols=59 Identities=7% Similarity=-0.054 Sum_probs=45.9
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 78 ~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
..+||.+|..- .--..+++++|++.. ...+||++=-+-.+.+.+.+++.+||+..++--
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~-~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGL-GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHS-CTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 46899999754 334468999998752 016899877788889999999999999998764
No 388
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=29.78 E-value=1.7e+02 Score=27.94 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=26.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR 63 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~ 63 (554)
.+|||..-...+-..|...|...|++|....
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 4899999999999999998888899887543
No 389
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=29.66 E-value=1.5e+02 Score=26.68 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=42.6
Q ss_pred CcEEEEEeCCHHH-----------------HHHHHHHHhhCCCEEE-EECC---HHHHHHHHH---hcCCCceEEEEecC
Q 008761 32 KVRILLCDNDSNS-----------------SDAVFSLLVKCSYQVT-SVRS---PRQVIDALN---AEGSDIDLILAEVD 87 (554)
Q Consensus 32 kirVLIVDDd~~~-----------------r~~L~~lL~~~g~eV~-~A~d---g~EALe~L~---~~~~~PDLILLDi~ 87 (554)
..+|+++.|+-.. ...|...+. .++.|. ..-+ ....+..+. ....+||+|++-+.
T Consensus 3 ~~~i~~~GDSit~~g~~~~~~~~~g~~~~~~~~l~~~~~-~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~~pd~vvi~~G 81 (240)
T 3mil_A 3 YEKFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYT-RKMDILQRGFKGYTSRWALKILPEILKHESNIVMATIFLG 81 (240)
T ss_dssp CEEEEEEESHHHHTTTCSCCSTTCCCCCCHHHHHHHHTT-TTEEEEEEECTTCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_pred cccEEEEccchhhhhcCcccccccchHhHHHHHHHHHhc-cceEEEecCcCcccHHHHHHHHHHHhcccCCCCEEEEEee
Confidence 4588999988664 223333332 245555 3323 333433332 11137999999765
Q ss_pred CCCC--------c------H-HHHHHHHHhccCCCCceEEEEecC
Q 008761 88 LPMT--------K------G-LKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 88 MP~m--------D------G-lElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
.-+. + . .++++.|++. ..+||+++..
T Consensus 82 ~ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~----~~~vil~~~~ 122 (240)
T 3mil_A 82 ANDACSAGPQSVPLPEFIDNIRQMVSLMKSY----HIRPIIIGPG 122 (240)
T ss_dssp TTTTSSSSTTCCCHHHHHHHHHHHHHHHHHT----TCEEEEECCC
T ss_pred cCcCCccCCCCCCHHHHHHHHHHHHHHHHHc----CCeEEEEcCC
Confidence 4433 1 1 2355556553 4577777753
No 390
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=29.66 E-value=1.1e+02 Score=25.36 Aligned_cols=84 Identities=7% Similarity=0.103 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHhhCCCEEEEE--------CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 41 DSNSSDAVFSLLVKCSYQVTSV--------RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 41 d~~~r~~L~~lL~~~g~eV~~A--------~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
++.....+..++......|.+- .....|.++|... ..+....|+.. .-++.+.|+.......+|.|
T Consensus 4 s~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~--gi~~~~~dI~~----~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 4 TPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNL--NVPFEDVNILE----NEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp CHHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHT--TCCCEEEEGGG----CHHHHHHHHHHHTCSSSCEE
T ss_pred CHHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHc--CCCcEEEECCC----CHHHHHHHHHHHCCCCCCeE
Confidence 3556777888888766555533 2357788888877 45666677752 12344444433234678999
Q ss_pred EEecC--CCHHHHHHHHHcC
Q 008761 113 MMSAQ--DEVSVVVKCLRLG 130 (554)
Q Consensus 113 VLSs~--~d~e~~~eAL~aG 130 (554)
++-+. .+.+.+.+..+.|
T Consensus 78 fi~g~~iGG~d~l~~l~~~G 97 (109)
T 3ipz_A 78 YIGGEFFGGCDITLEAFKTG 97 (109)
T ss_dssp EETTEEEECHHHHHHHHHHS
T ss_pred EECCEEEeCHHHHHHHHHcC
Confidence 98753 3444555554444
No 391
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=29.55 E-value=2.4e+02 Score=24.92 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=59.2
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCC--cHHHHHHHHHhccCCCC
Q 008761 34 RILLCD--NDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQR 108 (554)
Q Consensus 34 rVLIVD--Dd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~m--DGlElLr~Ir~~~~~~~ 108 (554)
+|+|+. .+......+...|...|..+.... ++.+....+.... +=|++|+ +...+. +-+++++..++ ..
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~d~~i~-iS~sG~t~~~~~~~~~ak~----~g 114 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLR-PTDLMIG-VSVWRYLRDTVAALAGAAE----RG 114 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCC-TTEEEEE-ECCSSCCHHHHHHHHHHHH----TT
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCC-CCCEEEE-EeCCCCCHHHHHHHHHHHH----CC
Confidence 555554 566667777888888888888776 5666655554432 3455554 555554 34566666665 46
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 109 iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
++||.+|...+..... .|+-.|.-|
T Consensus 115 ~~vi~IT~~~~s~l~~-----~ad~~l~~~ 139 (187)
T 3sho_A 115 VPTMALTDSSVSPPAR-----IADHVLVAA 139 (187)
T ss_dssp CCEEEEESCTTSHHHH-----HCSEEEECC
T ss_pred CCEEEEeCCCCCcchh-----hCcEEEEec
Confidence 8999999976654332 356666554
No 392
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=29.55 E-value=2.9e+02 Score=26.04 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=48.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAE---GSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~-~A~dg~EALe~L~~~---~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
..+|..||-++......++.+...|+ .|. ...++.+.+..+... ...+|+|++|.... +-..+++.+..
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~ 178 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRLID 178 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHHHH
Confidence 35899999999999999998887775 344 567887777665311 13799999996532 33455555544
No 393
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=29.51 E-value=2.8e+02 Score=24.91 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=23.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTS 61 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~ 61 (554)
+|||..-...+-..|.+.|.+.|++|..
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~ 29 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYA 29 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEE
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence 7899998888888898888888888763
No 394
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=29.31 E-value=1.1e+02 Score=32.22 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=29.1
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHhhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEec
Q 008761 32 KVRILLCDNDS---NSSDAVFSLLVKCSYQVTSVR---SP----RQVIDALNAEGSDIDLILAEV 86 (554)
Q Consensus 32 kirVLIVDDd~---~~r~~L~~lL~~~g~eV~~A~---dg----~EALe~L~~~~~~PDLILLDi 86 (554)
..+|++||-|+ .....|...-...++.|+.+. +. .++++.+... .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 46788888775 222223222233355555432 22 3345555433 689999998
No 395
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=29.30 E-value=1.9e+02 Score=30.80 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 65 PRQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
..+.++.+.+. .+|+|.+|........ ++++++|++.. +.+|||+-.- ...+.+..+.++||+.+..
T Consensus 256 ~~~~a~~~~~a--G~d~v~i~~~~G~~~~~~~~i~~i~~~~--~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKY--PHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHT--TCSEEEECCSCCCSHHHHHHHHHHHHHC--TTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHc--CCCEEEeeccCCcchhHHHHHHHHHHhC--CCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 34444445444 6999999887644433 58899998763 4788876332 5567788999999988766
No 396
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=29.24 E-value=3.6e+02 Score=25.46 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=54.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CC----------HHHHHHHHHhcCCCceEEEEecCCCCCcHH-HH
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RS----------PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KM 96 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~d----------g~EALe~L~~~~~~PDLILLDi~MP~mDGl-El 96 (554)
.+..-.|||..-..-+-..+...|.+.|+.|+.+ .+ .++..+.+... ...+.++-+++-+.+.+ ++
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~ 80 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRAA 80 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHH
Confidence 3455689999999999999999999999988743 33 34555555544 34555555555555554 45
Q ss_pred HHHHHhccCCCCceEEEEec
Q 008761 97 LKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 97 Lr~Ir~~~~~~~iPIIVLSs 116 (554)
++++.+.. ..+-+||-.+
T Consensus 81 ~~~~~~~~--g~iD~lvnnA 98 (274)
T 3e03_A 81 VAATVDTF--GGIDILVNNA 98 (274)
T ss_dssp HHHHHHHH--SCCCEEEECC
T ss_pred HHHHHHHc--CCCCEEEECC
Confidence 66665542 4566776665
No 397
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=29.24 E-value=1.6e+02 Score=24.71 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHhhCCCEEEEEC---CHHHH-HHHHHhcCCC---ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEE
Q 008761 41 DSNSSDAVFSLLVKCSYQVTSVR---SPRQV-IDALNAEGSD---IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 41 d~~~r~~L~~lL~~~g~eV~~A~---dg~EA-Le~L~~~~~~---PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIV 113 (554)
++.....+..++......+.+.. ....+ ..+|... . +++..+|+.... +|.++.+.|.+......+|.|+
T Consensus 11 ~~~~~~~~~~~i~~~~Vvvf~~~~Cp~C~~alk~~L~~~--~~~~i~~~~vdid~~~-~~~~~~~~l~~~~g~~tvP~vf 87 (118)
T 3c1r_A 11 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKL--KVPRSKVLVLQLNDMK-EGADIQAALYEINGQRTVPNIY 87 (118)
T ss_dssp CHHHHHHHHHHHHHSSEEEEECSSCHHHHHHHHHHHTTS--CCCGGGEEEEEGGGST-THHHHHHHHHHHHSCCSSCEEE
T ss_pred CHHHHHHHHHHHccCcEEEEEcCCCcCHHHHHHHHHHHc--CCCCCCeEEEECccCC-ChHHHHHHHHHHhCCCCcCEEE
Confidence 45566778888877655555433 34566 6666554 5 788888886533 4555555555433346789997
Q ss_pred Eec
Q 008761 114 MSA 116 (554)
Q Consensus 114 LSs 116 (554)
+-+
T Consensus 88 i~g 90 (118)
T 3c1r_A 88 ING 90 (118)
T ss_dssp ETT
T ss_pred ECC
Confidence 744
No 398
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=29.23 E-value=1.8e+02 Score=28.62 Aligned_cols=33 Identities=6% Similarity=0.151 Sum_probs=26.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEEEE
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVTSV 62 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~-g~eV~~A 62 (554)
|++.+|||..-.-.+-..|...|.+. |++|...
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~ 55 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGM 55 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEE
Confidence 45679999999999999988888766 8887743
No 399
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=29.18 E-value=1.3e+02 Score=28.07 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=23.9
Q ss_pred HHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 69 IDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 69 Le~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
++.+.+. +|||||...... .-+..++|.+ ..+|+|++..
T Consensus 52 ~E~i~~l--~PDlIi~~~~~~---~~~~~~~L~~----~gipvv~~~~ 90 (255)
T 3md9_A 52 AEGILAM--KPTMLLVSELAQ---PSLVLTQIAS----SGVNVVTVPG 90 (255)
T ss_dssp HHHHHTT--CCSEEEEETTCS---CHHHHHHHHH----TTCEEEEECC
T ss_pred HHHHHcc--CCCEEEEcCCcC---chhHHHHHHH----cCCcEEEeCC
Confidence 3445444 799999865431 1345666654 3478888864
No 400
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=29.18 E-value=60 Score=31.49 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCEEEEECCHHHH-------HHHHHhcCCCceEEEEec-CC---CC-----------CcHHHHHHHHHhc
Q 008761 46 DAVFSLLVKCSYQVTSVRSPRQV-------IDALNAEGSDIDLILAEV-DL---PM-----------TKGLKMLKYITRD 103 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~dg~EA-------Le~L~~~~~~PDLILLDi-~M---P~-----------mDGlElLr~Ir~~ 103 (554)
..|.++|+..+++|.... ..++ ++.|. .+||||++- .- .. .+-++++++.-+.
T Consensus 43 ~~l~~aL~~~~~~v~~~~-~~~~~~~fp~~~~~L~----~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~ 117 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMP-AHTVQIAFPESIDELN----RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKN 117 (256)
T ss_dssp HHHHHHHHHTTCEEEEEC-HHHHHHCCCCSHHHHH----TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCceEEEEe-cccchhhCCcChhHHh----cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHh
Confidence 346666666789888763 2211 13332 589999863 21 10 3445666666653
Q ss_pred cCCCCceEEEEecC
Q 008761 104 KELQRIPVIMMSAQ 117 (554)
Q Consensus 104 ~~~~~iPIIVLSs~ 117 (554)
...+|++.+.
T Consensus 118 ----GGgll~igG~ 127 (256)
T 2gk3_A 118 ----GGGLLMIGGY 127 (256)
T ss_dssp ----TCEEEEECST
T ss_pred ----CCEEEEECCh
Confidence 4678888664
No 401
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=29.03 E-value=2.2e+02 Score=26.69 Aligned_cols=63 Identities=8% Similarity=0.193 Sum_probs=37.3
Q ss_pred HHHHHHHHhhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 45 SDAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~---dg---~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
...+...+...||.+..+. +. .+.++.+... .+|-||+--. ..+ -+.++.+.. ..+|||++..
T Consensus 35 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~--~~~-~~~~~~l~~----~~iPvV~~~~ 103 (289)
T 2fep_A 35 ARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGK--QVDGIVFMGG--NIT-DEHVAEFKR----SPVPIVLAAS 103 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCS--CCC-HHHHHHHHH----SSSCEEEESC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecC--CCC-HHHHHHHHh----cCCCEEEEcc
Confidence 3444556667899876443 23 2345555555 7998887432 112 345666654 4689998864
No 402
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=29.02 E-value=1.6e+02 Score=27.44 Aligned_cols=82 Identities=11% Similarity=0.036 Sum_probs=51.4
Q ss_pred CCcEEEEEeCC--HHHHHHHHHHHhhCCCEEEEE-C--CHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 31 SKVRILLCDND--SNSSDAVFSLLVKCSYQVTSV-R--SPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 31 skirVLIVDDd--~~~r~~L~~lL~~~g~eV~~A-~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
...+|||..-. .-+-..+...|.+.|+.|+.+ . ...+.++.+........++.+|+ -+.+.+ .+++.+.+..
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv--~~~~~v~~~~~~~~~~~ 90 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDV--ADDAQIDALFASLKTHW 90 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCT--TCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCC--CCHHHHHHHHHHHHHHc
Confidence 45688999976 888899999998889988754 2 33455555544322344444554 444444 3666666542
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+||..+
T Consensus 91 --g~id~lv~nA 100 (271)
T 3ek2_A 91 --DSLDGLVHSI 100 (271)
T ss_dssp --SCEEEEEECC
T ss_pred --CCCCEEEECC
Confidence 4566776654
No 403
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=28.85 E-value=2.2e+02 Score=26.53 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=48.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCCceE
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRIPV 111 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~iPI 111 (554)
-+|||..-..-+-..+...|.+.|+.|..+....+.++.+.........+.+|+ -+.+.+ ++++.+.+.. ..+-+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv--~~~~~v~~~~~~~~~~~--g~id~ 78 (247)
T 3dii_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDV--ADPLTLKKFVEYAMEKL--QRIDV 78 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCT--TSHHHHHHHHHHHHHHH--SCCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeEEeeC--CCHHHHHHHHHHHHHHc--CCCCE
Confidence 378999999999999999999999988754433333444433311333444454 344443 3555555432 45667
Q ss_pred EEEec
Q 008761 112 IMMSA 116 (554)
Q Consensus 112 IVLSs 116 (554)
|+-.+
T Consensus 79 lv~nA 83 (247)
T 3dii_A 79 LVNNA 83 (247)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76654
No 404
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=28.84 E-value=1.8e+02 Score=28.68 Aligned_cols=80 Identities=11% Similarity=0.171 Sum_probs=49.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECC--HHHHHHHHHhcCCCceEEEEecCCC-----------CCcH-HHHH
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRS--PRQVIDALNAEGSDIDLILAEVDLP-----------MTKG-LKML 97 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~-eV~~A~d--g~EALe~L~~~~~~PDLILLDi~MP-----------~mDG-lElL 97 (554)
++|||..-.-.+-..|.+.|.+.|+ +|+.+.- -.+.++.+.. .+|+|+--.... ...| ..++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~---~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~ 77 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALL---KADFIVHLAGVNRPEHDKEFSLGNVSYLDHVL 77 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHH---HCSEEEECCCSBCTTCSTTCSSSCCBHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhc---cCCEEEECCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999888887787 8875542 2344444433 389988533211 1233 3455
Q ss_pred HHHHhccCCCCceEEEEecC
Q 008761 98 KYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 98 r~Ir~~~~~~~iPIIVLSs~ 117 (554)
+.+++.. ....+|.+|+.
T Consensus 78 ~a~~~~~--~~~~~v~~Ss~ 95 (369)
T 3st7_A 78 DILTRNT--KKPAILLSSSI 95 (369)
T ss_dssp HHHTTCS--SCCEEEEEEEG
T ss_pred HHHHHhC--CCCeEEEeCch
Confidence 5555432 22368888763
No 405
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=28.84 E-value=2.7e+02 Score=27.88 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=55.0
Q ss_pred cccccccccCCCCCCCCCCCCCcCCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CC----------HHHHHHHHH
Q 008761 5 EMNLNKECSGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RS----------PRQVIDALN 73 (554)
Q Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~d----------g~EALe~L~ 73 (554)
-|.+|......+....- ......+..-.|||..-..-+-..+...|.+.|+.|+.+ .+ ..++.+.+.
T Consensus 20 ~~~~m~~~~~~~~~~~m--~~~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~ 97 (346)
T 3kvo_A 20 HMASMTGGQQMGRGSAM--LPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIE 97 (346)
T ss_dssp ----------------C--CCCCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHH
T ss_pred hhhhcCCcccccCCccc--CccCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHH
Confidence 45555555444432221 111123345679999999999999999999999987743 33 235556665
Q ss_pred hcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCCceEEEEec
Q 008761 74 AEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 74 ~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~iPIIVLSs 116 (554)
.. ...+.++-+++-+.+.+ ++++.+.+.. ..+-+||-.+
T Consensus 98 ~~--g~~~~~~~~Dv~d~~~v~~~~~~~~~~~--g~iDilVnnA 137 (346)
T 3kvo_A 98 AV--GGKALPCIVDVRDEQQISAAVEKAIKKF--GGIDILVNNA 137 (346)
T ss_dssp HT--TCEEEEEECCTTCHHHHHHHHHHHHHHH--SCCCEEEECC
T ss_pred hc--CCeEEEEEccCCCHHHHHHHHHHHHHHc--CCCCEEEECC
Confidence 54 34555555555555554 3556665432 4566776654
No 406
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=28.78 E-value=3.2e+02 Score=26.12 Aligned_cols=84 Identities=8% Similarity=0.013 Sum_probs=54.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CC----------HHHHHHHHHhcCCCceEEEEecCCCCCcHH-HH
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RS----------PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KM 96 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~d----------g~EALe~L~~~~~~PDLILLDi~MP~mDGl-El 96 (554)
.+..-.|||..-..-+-..+...|.+.|+.|+.+ .+ .++..+.+... ...+.++-+++-+.+.+ ++
T Consensus 6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHH
Confidence 3445689999999999999999999999988743 33 33555555554 34555555555555544 35
Q ss_pred HHHHHhccCCCCceEEEEec
Q 008761 97 LKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 97 Lr~Ir~~~~~~~iPIIVLSs 116 (554)
++.+.+.. ..+-+||-.+
T Consensus 84 ~~~~~~~~--g~id~lvnnA 101 (285)
T 3sc4_A 84 VAKTVEQF--GGIDICVNNA 101 (285)
T ss_dssp HHHHHHHH--SCCSEEEECC
T ss_pred HHHHHHHc--CCCCEEEECC
Confidence 66665542 4567777654
No 407
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=28.77 E-value=2.4e+02 Score=26.29 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=48.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAE---GSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~--eV~-~A~dg~EALe~L~~~---~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
..+|..||-++...+..++.+...|+ .|. ...++.+.+..+... ...+|+|++|...+ +-.++++.+..
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~~ 169 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLMK 169 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHHH
Confidence 46899999999999999999987775 244 567888877665321 13799999996432 33445555544
No 408
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=28.74 E-value=1.8e+02 Score=28.82 Aligned_cols=34 Identities=9% Similarity=-0.006 Sum_probs=21.6
Q ss_pred CCcEEEEEeCCH----HHHHHHHHHHhhCCCEEEEECC
Q 008761 31 SKVRILLCDNDS----NSSDAVFSLLVKCSYQVTSVRS 64 (554)
Q Consensus 31 skirVLIVDDd~----~~r~~L~~lL~~~g~eV~~A~d 64 (554)
+++||||+-... .-...|...|.+.|++|..+..
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 346999886431 1123467777788998885543
No 409
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=28.55 E-value=2.2e+02 Score=28.02 Aligned_cols=101 Identities=13% Similarity=0.192 Sum_probs=54.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-C----HHHHHHHHHhcCCCce-EEEEecCCCCCcHHHHHHHHHhcc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-S----PRQVIDALNAEGSDID-LILAEVDLPMTKGLKMLKYITRDK 104 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~-d----g~EALe~L~~~~~~PD-LILLDi~MP~mDGlElLr~Ir~~~ 104 (554)
++||.||.--......+.. | ..+++++ .+. + .+.+.+.+.+. .++ -+.- |--+++..
T Consensus 2 ~~rvgiiG~G~~~~~~~~~-l-~~~~~lvav~d~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~ll~~----- 65 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEG-L-DEECSITGIAPGVPEEDLSKLEKAISEM--NIKPKKYN-------NWWEMLEK----- 65 (337)
T ss_dssp CEEEEEECSSSCHHHHHTT-C-CTTEEEEEEECSSTTCCCHHHHHHHHTT--TCCCEECS-------SHHHHHHH-----
T ss_pred ceEEEEEccchhHHHHHHh-c-CCCcEEEEEecCCchhhHHHHHHHHHHc--CCCCcccC-------CHHHHhcC-----
Confidence 5788898864444433333 3 4567766 343 1 22333333322 221 1111 22233332
Q ss_pred CCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHH
Q 008761 105 ELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLRT--NELLNLWTH 150 (554)
Q Consensus 105 ~~~~iPIIVLSs~~--d~e~~~eAL~aGA~DyL~KP~~~--eeL~~~L~~ 150 (554)
..+-+|+|+... -.+.+.+|+++|..=|+.||+.. ++..+.++.
T Consensus 66 --~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 113 (337)
T 3ip3_A 66 --EKPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSV 113 (337)
T ss_dssp --HCCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHH
T ss_pred --CCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 234566665533 35678999999999999999854 555554443
No 410
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=28.52 E-value=1.3e+02 Score=27.24 Aligned_cols=67 Identities=7% Similarity=0.095 Sum_probs=45.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSY-QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~-eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
.+|.-||-++...+..+..+...++ .|. ...|..+.+.. ....+|+|++|.-....+..++++.|..
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~---~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ---KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS---CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh---cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 4899999999999999988877764 343 44566554322 2236999999865333344567777754
No 411
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=28.50 E-value=2.5e+02 Score=29.03 Aligned_cols=68 Identities=15% Similarity=0.266 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC---C------EEE-EECCHHHHHHHHHhcCCCceEEEEecCC-CC------CcHHH
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCS---Y------QVT-SVRSPRQVIDALNAEGSDIDLILAEVDL-PM------TKGLK 95 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g---~------eV~-~A~dg~EALe~L~~~~~~PDLILLDi~M-P~------mDGlE 95 (554)
.+|.+||=++.+.+..++.|...+ + .|. ...|+.+.++.+......+|+||+|.-- |. .-..+
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~e 291 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWE 291 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHH
Confidence 689999999999998888765211 1 233 5678888887653222379999999854 41 23456
Q ss_pred HHHHH
Q 008761 96 MLKYI 100 (554)
Q Consensus 96 lLr~I 100 (554)
+.+.+
T Consensus 292 Fy~~~ 296 (364)
T 2qfm_A 292 FLRLI 296 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 412
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=28.46 E-value=1.5e+02 Score=30.11 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=55.6
Q ss_pred cEEEEE-eCCHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCc
Q 008761 33 VRILLC-DNDSNSSDAVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (554)
Q Consensus 33 irVLIV-DDd~~~r~~L~~lL~~~g~eV~~A~--dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~i 109 (554)
++++++ .+++..++.+.+++.... .|.... ...+...++.. -|+++++- + |+. .+.+. ..+
T Consensus 264 ~~~v~~~g~~~~~~~~l~~~~~~~~-~v~~~~~lg~~~~~~l~~~----ad~vv~~S---G--g~~--~EA~a----~G~ 327 (396)
T 3dzc_A 264 CQILYPVHLNPNVREPVNKLLKGVS-NIVLIEPQQYLPFVYLMDR----AHIILTDS---G--GIQ--EEAPS----LGK 327 (396)
T ss_dssp EEEEEECCBCHHHHHHHHHHTTTCT-TEEEECCCCHHHHHHHHHH----CSEEEESC---S--GGG--TTGGG----GTC
T ss_pred ceEEEEeCCChHHHHHHHHHHcCCC-CEEEeCCCCHHHHHHHHHh----cCEEEECC---c--cHH--HHHHH----cCC
Confidence 555554 445656666665543221 233322 22455555543 47777764 2 332 22222 568
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008761 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~llr~~ 155 (554)
|+|++-...+.. +..+.|+. ++..+ +.++|...+..++...
T Consensus 328 PvV~~~~~~~~~---e~v~~G~~-~lv~~-d~~~l~~ai~~ll~d~ 368 (396)
T 3dzc_A 328 PVLVMRETTERP---EAVAAGTV-KLVGT-NQQQICDALSLLLTDP 368 (396)
T ss_dssp CEEECCSSCSCH---HHHHHTSE-EECTT-CHHHHHHHHHHHHHCH
T ss_pred CEEEccCCCcch---HHHHcCce-EEcCC-CHHHHHHHHHHHHcCH
Confidence 998753333322 35667864 66654 7889999998887643
No 413
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=28.40 E-value=58 Score=25.78 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.0
Q ss_pred CCccchhhhhhhhhcCCC-ccceeeec
Q 008761 488 DKKIRYVNRKRLAERRPR-VRGQFVRK 513 (554)
Q Consensus 488 ~k~i~y~~rk~~a~~r~r-~~g~f~~~ 513 (554)
.|+.-++||-..|-.|+| -.|||...
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~ 62 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTA 62 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccC
Confidence 455679999999999999 78999754
No 414
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=28.39 E-value=2.3e+02 Score=23.42 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=27.4
Q ss_pred EECCHHHHHHH-HHhcCCCceEEEEecC-CCCCcH---HHHHHHHHhccCCCCceEEEE
Q 008761 61 SVRSPRQVIDA-LNAEGSDIDLILAEVD-LPMTKG---LKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 61 ~A~dg~EALe~-L~~~~~~PDLILLDi~-MP~mDG---lElLr~Ir~~~~~~~iPIIVL 114 (554)
...+..+++-. .... ..+|+|++... ...... -...+++... .++||+++
T Consensus 91 ~~g~~~~~I~~~~a~~-~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~---~~~pVlvV 145 (146)
T 3s3t_A 91 SYGIPKHTIEDYAKQH-PEIDLIVLGATGTNSPHRVAVGSTTSYVVDH---APCNVIVI 145 (146)
T ss_dssp EEECHHHHHHHHHHHS-TTCCEEEEESCCSSCTTTCSSCHHHHHHHHH---CSSEEEEE
T ss_pred ecCChHHHHHHHHHhh-cCCCEEEECCCCCCCcceEEEcchHHHHhcc---CCCCEEEe
Confidence 34455555544 3322 27999999864 222221 1344455443 56899886
No 415
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=28.29 E-value=3.4e+02 Score=25.81 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=51.3
Q ss_pred cCCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 27 ~~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
.|.+....|||..-..-+-..+...|.+.|+.|+.+. +...+-+...+......+.++.+++-+.+.+ ++++.+.+..
T Consensus 24 ~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (276)
T 2b4q_A 24 YFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELS 103 (276)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3445556899999999999999999999999988554 4433322222211111444444444444443 3455555432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+||-.+
T Consensus 104 --g~iD~lvnnA 113 (276)
T 2b4q_A 104 --ARLDILVNNA 113 (276)
T ss_dssp --SCCSEEEECC
T ss_pred --CCCCEEEECC
Confidence 4566776654
No 416
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=28.29 E-value=3.4e+02 Score=25.57 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=51.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-C------------H---HHHHHHHHhcCCCceEEEEecCCCCCcHH
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-S------------P---RQVIDALNAEGSDIDLILAEVDLPMTKGL 94 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-d------------g---~EALe~L~~~~~~PDLILLDi~MP~mDGl 94 (554)
..-+|||..-..-+-..+...|.+.|+.|+.+. + . .+..+.+... ...+.++.+++-+.+.+
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHH
Confidence 445799999999999999999999999887543 2 2 2233334333 34555555555555444
Q ss_pred -HHHHHHHhccCCCCceEEEEec
Q 008761 95 -KMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 95 -ElLr~Ir~~~~~~~iPIIVLSs 116 (554)
++++.+.+.. ..+-+||-.+
T Consensus 87 ~~~~~~~~~~~--g~id~lv~nA 107 (281)
T 3s55_A 87 ESFVAEAEDTL--GGIDIAITNA 107 (281)
T ss_dssp HHHHHHHHHHH--TCCCEEEECC
T ss_pred HHHHHHHHHhc--CCCCEEEECC
Confidence 3556665432 4566776654
No 417
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=28.27 E-value=3.4e+02 Score=27.07 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=55.9
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 34 RILLCDNDSNS----SDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 34 rVLIVDDd~~~----r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
.|+|.|.+-.. .+.+..+-+..+. -.+.+.+.+++.+.+.. .+|.|.+|- ++ .+.++.+.+.. ..
T Consensus 181 ~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~----~~-~e~l~~~v~~~-~~ 251 (296)
T 1qap_A 181 AFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDN----FN-TDQMREAVKRV-NG 251 (296)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESS----CC-HHHHHHHHHTT-CT
T ss_pred EEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECC----CC-HHHHHHHHHHh-CC
Confidence 35565554443 4445554444443 34478888888888764 589999985 33 34444444321 13
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
.++| ..|+.-+.+.+.+..+.||+-+
T Consensus 252 ~~~I-~ASGGIt~~~i~~~a~~GvD~i 277 (296)
T 1qap_A 252 QARL-EVSGNVTAETLREFAETGVDFI 277 (296)
T ss_dssp TCCE-EECCCSCHHHHHHHHHTTCSEE
T ss_pred CCeE-EEECCCCHHHHHHHHHcCCCEE
Confidence 4554 4566668888999999999554
No 418
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=28.18 E-value=3.4e+02 Score=25.25 Aligned_cols=83 Identities=8% Similarity=-0.009 Sum_probs=49.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~ 107 (554)
+...+|||..-..-+-..+...|.+.|++|.. ..+...+-+..........++.+|+ -+.+.+ ++++.+.+.. .
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~--~d~~~v~~~~~~~~~~~--g 85 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDV--TKRASVDAAMQKAIDAL--G 85 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCT--TCHHHHHHHHHHHHHHH--T
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeC--CCHHHHHHHHHHHHHHc--C
Confidence 34568999999999999999999999999874 4555444333332211234444554 343443 3455554432 3
Q ss_pred CceEEEEec
Q 008761 108 RIPVIMMSA 116 (554)
Q Consensus 108 ~iPIIVLSs 116 (554)
.+-+||-.+
T Consensus 86 ~iD~lv~~A 94 (263)
T 3ak4_A 86 GFDLLCANA 94 (263)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEECC
Confidence 556666554
No 419
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=28.14 E-value=3.1e+02 Score=25.52 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=48.4
Q ss_pred CCcEEEEEeCC--HHHHHHHHHHHhhCCCEEEEE-CC--HHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 31 SKVRILLCDND--SNSSDAVFSLLVKCSYQVTSV-RS--PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 31 skirVLIVDDd--~~~r~~L~~lL~~~g~eV~~A-~d--g~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
..-+|||..-. .-+-..+...|.+.|+.|+.. .+ ..+.++.+........+.++-+++-+.+.+ ++++.+.+..
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 34578999888 448888988888889988754 33 224444443321111344444444455544 3566665542
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 86 --g~id~li~~A 95 (266)
T 3oig_A 86 --GVIHGIAHCI 95 (266)
T ss_dssp --SCCCEEEECC
T ss_pred --CCeeEEEEcc
Confidence 4556666654
No 420
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=28.08 E-value=84 Score=28.61 Aligned_cols=68 Identities=7% Similarity=0.131 Sum_probs=44.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC---EEE-EECCHHHHHHHHHhcCCC-ceEEEEecCCCCCcHHHHHHHHHh
Q 008761 33 VRILLCDNDSNSSDAVFSLLVKCSY---QVT-SVRSPRQVIDALNAEGSD-IDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g~---eV~-~A~dg~EALe~L~~~~~~-PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
.+|.-||-++...+..+..+...++ .|. ...|..+.+..+. ... +|+|++|.-....+-.++++.+..
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~~~~~~~~~~~~~~l~~~~~ 149 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ--NQPHFDVVFLDPPFHFNLAEQAISLLCE 149 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC--SSCCEEEEEECCCSSSCHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc--cCCCCCEEEECCCCCCccHHHHHHHHHh
Confidence 4899999999999999988877665 344 4456655432211 126 899999865433344567777743
No 421
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=28.03 E-value=66 Score=29.63 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=39.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCc-eEEEEecC
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDI-DLILAEVD 87 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~P-DLILLDi~ 87 (554)
.++.++|||..-...+-..|.+.|.+.|++|.. ..+... ++.+... .. .++.+|+.
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~-~~~~~~~--~~~~~~~~Dl~ 75 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQ-GPELRER--GASDIVVANLE 75 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHT--TCSEEEECCTT
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHH-HHHHHhC--CCceEEEcccH
Confidence 345679999999999999999999888999884 444443 3444433 56 77778876
No 422
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=27.94 E-value=1.3e+02 Score=28.26 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=38.2
Q ss_pred HHHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
...+.+.+...||.+..+. +.. +.++.+... .+|-||+--... ..++++.+.. ..+|||++...
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~---~~~~~~~~~~----~~iPvV~~~~~ 96 (291)
T 3egc_A 27 ASGVESEARHKGYSVLLANTAEDIVREREAVGQFFER--RVDGLILAPSEG---EHDYLRTELP----KTFPIVAVNRE 96 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCSS---CCHHHHHSSC----TTSCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHC--CCCEEEEeCCCC---ChHHHHHhhc----cCCCEEEEecc
Confidence 3445556667899877544 222 355555555 799888744322 2345555543 57899988653
No 423
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=27.79 E-value=4e+02 Score=28.33 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=58.0
Q ss_pred HHHHHHHHhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC---CCCCcHHHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 45 SDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD---LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~---MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
...|.....+.|.++. .+++.+|+...+.. .+|+|=+... --..| ++.+.+|...-+ ..+++|.-|+-...
T Consensus 146 l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~l---ga~iIGinnr~L~t~~~d-l~~~~~L~~~ip-~~~~vIaEsGI~t~ 220 (452)
T 1pii_A 146 YRQLAAVAHSLEMGVLTEVSNEEEQERAIAL---GAKVVGINNRDLRDLSID-LNRTRELAPKLG-HNVTVISESGINTY 220 (452)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHHHT---TCSEEEEESEETTTTEEC-THHHHHHHHHHC-TTSEEEEESCCCCH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHC---CCCEEEEeCCCCCCCCCC-HHHHHHHHHhCC-CCCeEEEECCCCCH
Confidence 3344444556798866 88999999888765 4888877542 11222 455555543211 35677777788889
Q ss_pred HHHHHHHHcCCCEEEe
Q 008761 121 SVVVKCLRLGAADYLV 136 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~ 136 (554)
+.+.++.++ |+.||.
T Consensus 221 edv~~~~~~-a~avLV 235 (452)
T 1pii_A 221 AQVRELSHF-ANGFLI 235 (452)
T ss_dssp HHHHHHTTT-CSEEEE
T ss_pred HHHHHHHHh-CCEEEE
Confidence 999999999 999975
No 424
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=27.65 E-value=2.7e+02 Score=23.27 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=13.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSV 62 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A 62 (554)
+|+|+.--. +...+...|...|++|...
T Consensus 8 ~v~I~G~G~-iG~~la~~L~~~g~~V~~i 35 (141)
T 3llv_A 8 EYIVIGSEA-AGVGLVRELTAAGKKVLAV 35 (141)
T ss_dssp SEEEECCSH-HHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCH-HHHHHHHHHHHCCCeEEEE
Confidence 455555433 3444444444445554433
No 425
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=27.64 E-value=1.3e+02 Score=30.45 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=45.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC-----cHHHHHHHHHhc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-----KGLKMLKYITRD 103 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~m-----DGlElLr~Ir~~ 103 (554)
..+|.+||=++.+.+..++.+... .-.|. ...|+.+.+..+.. ..+|+||+|+..+.. ...++++.+++.
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~ 189 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP--ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRG 189 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT--TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC--CCCCEEEECCCCccccchhhhHHHHHHHHHHh
Confidence 568999999999998888877532 12233 56778776644322 379999999865531 124566666543
No 426
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=27.57 E-value=1.2e+02 Score=28.43 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=46.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ---VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e---V~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
..+|..||-++...+..++.+...|+. |. ...++.+.+..+.. ..+|+|++|..... -.++++.+..
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~V~~d~~~~~--~~~~l~~~~~ 151 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQLVFGQVSPMD--LKALVDAAWP 151 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEEEEECCCTTT--HHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCeEEEcCcHHH--HHHHHHHHHH
Confidence 458999999999999999999887754 54 45566665544322 37999999975443 3345555543
No 427
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=27.52 E-value=2.2e+02 Score=28.37 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=42.3
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHH
Q 008761 33 VRILLCDNDSN----SSDAVFSLLVKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (554)
Q Consensus 33 irVLIVDDd~~----~r~~L~~lL~~~g~eV~~---A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir 101 (554)
-+|.||-++.. ..+.+.+.+++.|.+|.. . .+....+..++.. .||+|++....+ .+...+++.++
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~--~~d~v~~~~~~~-~~~~~~~~~~~ 241 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRAD--PPAVIVVTHFYP-QDQALFMNQFM 241 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHS--CCSEEEECCCCH-HHHHHHHHHHT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhc--CCCEEEEccccC-chHHHHHHHHH
Confidence 46655554444 334455566667877652 1 3567778888766 799999863221 24567788887
Q ss_pred hcc
Q 008761 102 RDK 104 (554)
Q Consensus 102 ~~~ 104 (554)
+..
T Consensus 242 ~~g 244 (419)
T 3h5l_A 242 TDP 244 (419)
T ss_dssp TSC
T ss_pred HcC
Confidence 654
No 428
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=27.45 E-value=2.1e+02 Score=26.86 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHHHHHHhhCCC-EEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCceEEEEec
Q 008761 45 SDAVFSLLVKCSY-QVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 45 r~~L~~lL~~~g~-eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iPIIVLSs 116 (554)
...+...+...|| ++..+. +.. +.++.+... .+|.||+-.. ..+. .++++.+.. ..+|||++..
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiii~~~--~~~~~~~~~~~~~~----~~iPvV~~~~ 92 (309)
T 2fvy_A 21 RKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK--GVKALAINLV--DPAAAGTVIEKARG----QNVPVVFFNK 92 (309)
T ss_dssp HHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCS--SGGGHHHHHHHHHT----TTCCEEEESS
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHc--CCCEEEEeCC--CcchhHHHHHHHHH----CCCcEEEecC
Confidence 3445556667798 877543 333 345555544 7998887321 2222 356677654 4689998865
Q ss_pred C
Q 008761 117 Q 117 (554)
Q Consensus 117 ~ 117 (554)
.
T Consensus 93 ~ 93 (309)
T 2fvy_A 93 E 93 (309)
T ss_dssp C
T ss_pred C
Confidence 4
No 429
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=27.41 E-value=1.8e+02 Score=24.96 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHhhCCCEEEEEC---CHHHH-HHHHHhcCCC---ceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEE
Q 008761 41 DSNSSDAVFSLLVKCSYQVTSVR---SPRQV-IDALNAEGSD---IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (554)
Q Consensus 41 d~~~r~~L~~lL~~~g~eV~~A~---dg~EA-Le~L~~~~~~---PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIV 113 (554)
+......+..++....+.|.+.. ....| ...|... . +++..+|+.... +|.++.+.|........+|.|+
T Consensus 23 ~~~~~~~v~~~i~~~~Vvvy~~~~Cp~C~~a~k~~L~~~--~~~~i~~~~vdvd~~~-~~~~~~~~L~~~~g~~tVP~vf 99 (129)
T 3ctg_A 23 SQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQEL--NVPKSKALVLELDEMS-NGSEIQDALEEISGQKTVPNVY 99 (129)
T ss_dssp CHHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHTTS--CCCGGGEEEEEGGGST-THHHHHHHHHHHHSCCSSCEEE
T ss_pred cHHHHHHHHHHHcCCCEEEEECCCCCchHHHHHHHHHhc--CccCCCcEEEEccccC-CHHHHHHHHHHHhCCCCCCEEE
Confidence 45567778888877665555433 35566 6666555 5 778888886543 4555555555433346789998
Q ss_pred Eec
Q 008761 114 MSA 116 (554)
Q Consensus 114 LSs 116 (554)
+-.
T Consensus 100 i~g 102 (129)
T 3ctg_A 100 ING 102 (129)
T ss_dssp ETT
T ss_pred ECC
Confidence 754
No 430
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=27.32 E-value=1.5e+02 Score=28.10 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=48.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~ 108 (554)
+..+|||..-...+-..+...|.+.|+.|+. ..+.....+..........++.+|+ -+.+.+ ++++.+.+.. ..
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv--~~~~~~~~~~~~~~~~~--g~ 79 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDV--TDGERIDVVAADVLARY--GR 79 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCT--TCHHHHHHHHHHHHHHH--SC
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeC--CCHHHHHHHHHHHHHhC--CC
Confidence 3457899999999999999999889998874 4444433333333322344455554 343443 3445554432 45
Q ss_pred ceEEEEec
Q 008761 109 IPVIMMSA 116 (554)
Q Consensus 109 iPIIVLSs 116 (554)
+-+|+-.+
T Consensus 80 id~lv~~A 87 (281)
T 3m1a_A 80 VDVLVNNA 87 (281)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 56666654
No 431
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=27.29 E-value=3.8e+02 Score=25.34 Aligned_cols=85 Identities=9% Similarity=0.172 Sum_probs=51.0
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHH---HHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHh
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITR 102 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EA---Le~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~ 102 (554)
+.+...+|||..-...+-..+...|.+.|+.|+... +...+ .+.+... ...+.++..++-+.+.+ ++++.+.+
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~ 117 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKILT 117 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHHHH
Confidence 344556899999999999999999998899887544 54332 3333332 23444443434444443 34555544
Q ss_pred ccCCCCceEEEEec
Q 008761 103 DKELQRIPVIMMSA 116 (554)
Q Consensus 103 ~~~~~~iPIIVLSs 116 (554)
.. ..+-+|+..+
T Consensus 118 ~~--~~id~li~~A 129 (285)
T 2c07_A 118 EH--KNVDILVNNA 129 (285)
T ss_dssp HC--SCCCEEEECC
T ss_pred hc--CCCCEEEECC
Confidence 32 4566776654
No 432
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=27.28 E-value=1.2e+02 Score=28.50 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHH---HHHHHhhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEE
Q 008761 42 SNSSDA---VFSLLVKCSYQVTSVRS------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 42 ~~~r~~---L~~lL~~~g~eV~~A~d------g~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPII 112 (554)
+.+... +.+.+.+.||.+..+.. ..+.++.+... .+|-||+--.. ..-+.++.+.. ..+|||
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~---~~~~~~~~l~~----~~iPvV 93 (288)
T 3gv0_A 23 GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETG--SADGVIISKIE---PNDPRVRFMTE----RNMPFV 93 (288)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHT--CCSEEEEESCC---TTCHHHHHHHH----TTCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcC--CccEEEEecCC---CCcHHHHHHhh----CCCCEE
Confidence 445444 44455567898775432 23445555544 78888764211 11255666665 468999
Q ss_pred EEec
Q 008761 113 MMSA 116 (554)
Q Consensus 113 VLSs 116 (554)
++..
T Consensus 94 ~i~~ 97 (288)
T 3gv0_A 94 THGR 97 (288)
T ss_dssp EESC
T ss_pred EECC
Confidence 8864
No 433
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=27.26 E-value=1.4e+02 Score=27.54 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
...+.+.+...||.+..+. +.. +.++.+... .+|-||+--..+. ..+.++.+.. ..+|||++...
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~--~~~~~~~~~~----~~iPvV~~~~~ 91 (272)
T 3o74_A 21 AKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRAR--RCDALFVASCLPP--EDDSYRELQD----KGLPVIAIDRR 91 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCCCS--SCCHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEecCccc--cHHHHHHHHH----cCCCEEEEccC
Confidence 3344555667788876443 222 345555555 7898887543322 2345566654 46888888653
No 434
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=27.15 E-value=1.8e+02 Score=29.80 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=53.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCCCHH
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPLRTN 142 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy-L~KP~~~e 142 (554)
+.++|++.++... ..++..++--++. +-++.+++|++. ..+||+.-=...+.....++++.|+.|+ .+|+...-
T Consensus 230 ~~~~ai~~~~~l~-~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 304 (410)
T 2gl5_A 230 GTNSAIQFAKAIE-KYRIFLYEEPIHP-LNSDNMQKVSRS---TTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304 (410)
T ss_dssp CHHHHHHHHHHHG-GGCEEEEECSSCS-SCHHHHHHHHHH---CSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHHH-hcCCCeEECCCCh-hhHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccC
Confidence 6788888887752 5677777755553 447777888865 4688775444456778889999997776 56776544
Q ss_pred HHHH
Q 008761 143 ELLN 146 (554)
Q Consensus 143 eL~~ 146 (554)
-|..
T Consensus 305 Git~ 308 (410)
T 2gl5_A 305 GITE 308 (410)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 4443
No 435
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=27.10 E-value=3.5e+02 Score=26.42 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCceEEEEe----cC--CCCCc-HHHHHHHHHhccCCCCceEEEEecCCCH------HHHHHHHHcCCCE
Q 008761 67 QVIDALNAEGSDIDLILAE----VD--LPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEV------SVVVKCLRLGAAD 133 (554)
Q Consensus 67 EALe~L~~~~~~PDLILLD----i~--MP~mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~------e~~~eAL~aGA~D 133 (554)
.|++.+... ..++++||. .. -|..+ -+..+..|++. .++|||+.+++... .....|..+||++
T Consensus 148 ~Av~~i~~~-Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~---~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~G 223 (262)
T 1zco_A 148 YSAEYIMAQ-GNENVILCERGIRTFETATRFTLDISAVPVVKEL---SHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADG 223 (262)
T ss_dssp HHHHHHHTT-TCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHH---BSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHC-CCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhh---hCCCEEEEcCCCCCccchHHHHHHHHHHcCCCE
Confidence 344555543 357999987 21 12111 12334445443 35799888887542 5577789999997
Q ss_pred E-EeCC
Q 008761 134 Y-LVKP 138 (554)
Q Consensus 134 y-L~KP 138 (554)
+ |.|-
T Consensus 224 l~iE~H 229 (262)
T 1zco_A 224 IMVEVH 229 (262)
T ss_dssp EEEEBC
T ss_pred EEEEec
Confidence 6 4454
No 436
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=26.90 E-value=1.2e+02 Score=29.61 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=45.0
Q ss_pred EEEEE-eCCHH---HHHHHHHHHhhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHh
Q 008761 34 RILLC-DNDSN---SSDAVFSLLVKCSYQVT---SV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (554)
Q Consensus 34 rVLIV-DDd~~---~r~~L~~lL~~~g~eV~---~A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~ 102 (554)
+|.|| +|+.. ..+.+.+.|.+.|.+|. .. .+....+..++.. .||+|++.. .+.+...+++.+++
T Consensus 143 ~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~--~~~~a~~~~~~~~~ 218 (364)
T 3lop_A 143 RIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAA--DVQAIFLGA--TAEPAAQFVRQYRA 218 (364)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHS--CCSEEEEES--CHHHHHHHHHHHHH
T ss_pred eEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhC--CCCEEEEec--CcHHHHHHHHHHHH
Confidence 44444 44443 23445666667776432 22 2566777777765 799999854 23456778888887
Q ss_pred ccCCCCceEEEE
Q 008761 103 DKELQRIPVIMM 114 (554)
Q Consensus 103 ~~~~~~iPIIVL 114 (554)
.. ..+|||..
T Consensus 219 ~g--~~~~~i~~ 228 (364)
T 3lop_A 219 RG--GEAQLLGL 228 (364)
T ss_dssp TT--CCCEEEEC
T ss_pred cC--CCCeEEEe
Confidence 65 45675533
No 437
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=26.90 E-value=53 Score=31.10 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=35.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVD 87 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~ 87 (554)
+++|||..- -.+-..|...|.+.|++|.. ..+... .+.+... ...++..|+.
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~--~~~~~~~D~~ 57 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQ-MEAIRAS--GAEPLLWPGE 57 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGG-HHHHHHT--TEEEEESSSS
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhh-hhhHhhC--CCeEEEeccc
Confidence 468999997 88888899988888999884 444433 3333333 4666666654
No 438
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=26.80 E-value=2.9e+02 Score=23.43 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=46.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSY-QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~-eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~ 103 (554)
...+|..+|-++...+.....+...+. .+. ...+..+. +... .+|+|+++.- .+-.++++.+.+.
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~--~~D~i~~~~~---~~~~~~l~~~~~~ 122 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---LDKL--EFNKAFIGGT---KNIEKIIEILDKK 122 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---GGGC--CCSEEEECSC---SCHHHHHHHHHHT
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---ccCC--CCcEEEECCc---ccHHHHHHHHhhC
Confidence 356899999999999999888877664 233 45666652 3223 7999999765 5556777777764
No 439
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=26.79 E-value=3.7e+02 Score=24.98 Aligned_cols=82 Identities=7% Similarity=0.050 Sum_probs=49.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~ 108 (554)
...+|||..-..-+-..+...|.+.|+.|+. ..+.+.+-+...+. ...+.++.+++-+.+.+ ++++.+.+.. ..
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~--g~ 79 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEF--GS 79 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHH--SC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHHc--CC
Confidence 3457999999999999999999999998874 45554443333322 22344443444444443 3555554432 35
Q ss_pred ceEEEEec
Q 008761 109 IPVIMMSA 116 (554)
Q Consensus 109 iPIIVLSs 116 (554)
+-+|+-.+
T Consensus 80 iD~lv~nA 87 (254)
T 1hdc_A 80 VDGLVNNA 87 (254)
T ss_dssp CCEEEECC
T ss_pred CCEEEECC
Confidence 66666654
No 440
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=26.59 E-value=1.1e+02 Score=38.93 Aligned_cols=84 Identities=10% Similarity=-0.050 Sum_probs=56.2
Q ss_pred HHHHHHhhCCCEEE-EECCHHHHHHH----HHhcCCCceEEE---Ee-cCCCCCc--------HHHHHHHHHhccCCCCc
Q 008761 47 AVFSLLVKCSYQVT-SVRSPRQVIDA----LNAEGSDIDLIL---AE-VDLPMTK--------GLKMLKYITRDKELQRI 109 (554)
Q Consensus 47 ~L~~lL~~~g~eV~-~A~dg~EALe~----L~~~~~~PDLIL---LD-i~MP~mD--------GlElLr~Ir~~~~~~~i 109 (554)
.+.++|+..|..++ .+.+..+|++. .+. .+|+|+ +. .+-.+-. -+.++.+|+.. ..+
T Consensus 683 ~~~~~l~~~gi~~i~~v~~~~~a~~~v~~l~~a---G~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~---~~i 756 (2060)
T 2uva_G 683 VANEYIQTLGIRHISFKPGSVDAIQQVINIAKA---NPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKC---SNI 756 (2060)
T ss_dssp HHHHHHHHSCCSEEEECCCSHHHHHHHHHHHHH---CTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTS---TTE
T ss_pred HHHHHHHHcCCeEEEecCCHHHHHHHHHHHHHc---CCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHH---cCC
Confidence 35566666676554 55566666655 333 588887 32 1122222 25677777764 578
Q ss_pred eEEEEecCCCHHHHHHHH-----------HcCCCEEEe
Q 008761 110 PVIMMSAQDEVSVVVKCL-----------RLGAADYLV 136 (554)
Q Consensus 110 PIIVLSs~~d~e~~~eAL-----------~aGA~DyL~ 136 (554)
|||+-.+-.+...+..+| .+||+....
T Consensus 757 pviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~ 794 (2060)
T 2uva_G 757 VLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMF 794 (2060)
T ss_dssp EEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEE
T ss_pred CEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEE
Confidence 988888889999999999 999999754
No 441
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=26.56 E-value=1.6e+02 Score=30.29 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=58.0
Q ss_pred HHHHHHHHhhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCcHHHHHHHHHhccCCCCceEEEEecC
Q 008761 45 SDAVFSLLVKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 45 r~~L~~lL~~~g~eV--~~A~dg~EALe~L~~~~~~PDLILLDi~MP-----~mDGlElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
.+.+..+-+..+.-| ..+.+.++|..++.. ..|.|++.-+-. +..-++++.+++.. ..+|||.-.+-
T Consensus 214 ~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~a---Gad~I~vs~~gg~~~d~~~~~~~~l~~v~~~---~~~pVia~GGI 287 (380)
T 1p4c_A 214 WEALRWLRDLWPHKLLVKGLLSAEDADRCIAE---GADGVILSNHGGRQLDCAISPMEVLAQSVAK---TGKPVLIDSGF 287 (380)
T ss_dssp HHHHHHHHHHCCSEEEEEEECCHHHHHHHHHT---TCSEEEECCGGGTSCTTCCCGGGTHHHHHHH---HCSCEEECSSC
T ss_pred HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEcCCCCCcCCCCcCHHHHHHHHHHH---cCCeEEEECCC
Confidence 355555555555433 356788888887764 489888843210 11236677777764 24588888888
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 008761 118 DEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 118 ~d~e~~~eAL~aGA~DyL~ 136 (554)
.....+.+++.+||+....
T Consensus 288 ~~~~dv~kal~~GAdaV~i 306 (380)
T 1p4c_A 288 RRGSDIVKALALGAEAVLL 306 (380)
T ss_dssp CSHHHHHHHHHTTCSCEEE
T ss_pred CCHHHHHHHHHhCCcHhhe
Confidence 8888999999999998854
No 442
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=26.54 E-value=1.3e+02 Score=30.31 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=44.7
Q ss_pred eEEEE-ecCCCCCcHH-HHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008761 80 DLILA-EVDLPMTKGL-KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (554)
Q Consensus 80 DLILL-Di~MP~mDGl-ElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP~~~eeL~~~L~~ 150 (554)
|.|++ |-++--..|+ +++++.++.. +..+|.|-. ++.+.+.+|+++||+-.+..-++++++...++.
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~~--~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~ 238 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKLD--SNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSI 238 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHHC--TTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHH
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhhC--CCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHh
Confidence 44554 5444333333 5677777653 567777643 355788999999999999999999888776654
No 443
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=26.53 E-value=2e+02 Score=29.11 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=43.9
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008761 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (554)
Q Consensus 59 V~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy 134 (554)
.+.+.+.+|+.+.+.. .+|+|+||-.-| -+--++++.++ . -..|..|+.-+.+.+.+..+.|++-+
T Consensus 211 eVEv~tl~e~~eAl~a---GaDiImLDn~s~-~~l~~av~~~~-----~-~v~leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 211 AIECDNISQVEESLSN---NVDMILLDNMSI-SEIKKAVDIVN-----G-KSVLEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEESCCH-HHHHHHHHHHT-----T-SSEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHhhc-----C-ceEEEEECCCCHHHHHHHHHcCCCEE
Confidence 3478899999999976 489999995332 11112333332 2 24667788777777777778888655
No 444
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=26.47 E-value=3.2e+02 Score=26.73 Aligned_cols=79 Identities=10% Similarity=0.014 Sum_probs=49.9
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhC--CCEEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHH
Q 008761 33 VRILLCDNDSN----SSDAVFSLLVKC--SYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (554)
Q Consensus 33 irVLIVDDd~~----~r~~L~~lL~~~--g~eV~~-------A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~ 99 (554)
-+|.||-++.. ....+...|+.. |++|.. ..+....+..++.. .||+|++... +.+...+++.
T Consensus 143 ~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~--~~d~v~~~~~--~~~~~~~~~~ 218 (387)
T 3i45_A 143 TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQA--EPEGLFNVLF--GADLPKFVRE 218 (387)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHT--CCSEEEECCC--TTHHHHHHHH
T ss_pred CeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhC--CCCEEEEcCc--cHHHHHHHHH
Confidence 46666654433 334456666665 676542 13567777777765 7999998654 4467788888
Q ss_pred HHhccCCCCceEEEEe
Q 008761 100 ITRDKELQRIPVIMMS 115 (554)
Q Consensus 100 Ir~~~~~~~iPIIVLS 115 (554)
+++......++|+-.+
T Consensus 219 ~~~~g~~~~~~i~~~~ 234 (387)
T 3i45_A 219 GRVRGLFAGRQVVSML 234 (387)
T ss_dssp HHHHTSSTTCEEEEEE
T ss_pred HHHcCCCCCCeEEeec
Confidence 8876543456666444
No 445
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=26.40 E-value=2.5e+02 Score=26.05 Aligned_cols=84 Identities=8% Similarity=0.041 Sum_probs=48.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-EC-CHHHH---HHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHH
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VR-SPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYIT 101 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~-dg~EA---Le~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir 101 (554)
+.+...+|||..-...+-..|.+.|.+.|+.|+. .. +...+ .+.+... ...+.++..++-+.+.+ ++++.+.
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 94 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAV 94 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3445668999999999999999999888998874 44 43332 2333332 23444444444444443 3444444
Q ss_pred hccCCCCceEEEEe
Q 008761 102 RDKELQRIPVIMMS 115 (554)
Q Consensus 102 ~~~~~~~iPIIVLS 115 (554)
... ..+-+|+..
T Consensus 95 ~~~--~~~d~vi~~ 106 (274)
T 1ja9_A 95 SHF--GGLDFVMSN 106 (274)
T ss_dssp HHH--SCEEEEECC
T ss_pred HHc--CCCCEEEEC
Confidence 322 345555543
No 446
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=26.38 E-value=3.4e+02 Score=25.37 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+...+...||.+..+. +.. +.++.+... .+|-||+-...+. ..++++.+.. ..+|||++..
T Consensus 40 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~~~--~~~~~~~~~~----~~iPvV~~~~ 108 (293)
T 2iks_A 40 NYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQR--QVDAIIVSTSLPP--EHPFYQRWAN----DPFPIVALDR 108 (293)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCSSCT--TCHHHHTTTT----SSSCEEEEES
T ss_pred HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHc--CCCEEEEeCCCCC--cHHHHHHHHh----CCCCEEEECC
Confidence 344555667799877543 232 345555554 7998887433222 1234455543 4689998864
No 447
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=26.35 E-value=4.4e+02 Score=25.26 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
+...+...+...||.+..+. +.. +.++.+... .+|-||+--. ..+.-.+.+.+.. ..+|||++..
T Consensus 81 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~~----~~iPvV~~~~ 151 (338)
T 3dbi_A 81 LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPR--FLSVDEIDDIIDA----HSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHT--TCSEEEECCS--SSCHHHHHHHHHH----CSSCEEEESS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCC--CCChHHHHHHHHc----CCCCEEEEcC
Confidence 34445566677899877543 222 255666555 7999888432 2233345555553 4589998864
No 448
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.31 E-value=2.1e+02 Score=26.82 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCEEEEECC------HHH---HHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEe
Q 008761 45 SDAVFSLLVKCSYQVTSVRS------PRQ---VIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (554)
Q Consensus 45 r~~L~~lL~~~g~eV~~A~d------g~E---ALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLS 115 (554)
...+...+...||.+..+.. ..+ .++.+... ++|-||+--..+ + -+.++.+.. ..+|||++.
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~--~-~~~~~~l~~----~~iPvV~~~ 97 (290)
T 2rgy_A 27 LKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGR--DCDGVVVISHDL--H-DEDLDELHR----MHPKMVFLN 97 (290)
T ss_dssp HHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHT--TCSEEEECCSSS--C-HHHHHHHHH----HCSSEEEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhc--CccEEEEecCCC--C-HHHHHHHhh----cCCCEEEEc
Confidence 34455566678998775432 123 56666655 799888743222 2 355666654 357999886
Q ss_pred c
Q 008761 116 A 116 (554)
Q Consensus 116 s 116 (554)
.
T Consensus 98 ~ 98 (290)
T 2rgy_A 98 R 98 (290)
T ss_dssp S
T ss_pred c
Confidence 4
No 449
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=26.28 E-value=2.1e+02 Score=26.79 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+...+...||.+..+. +.. +.++.+... ++|-||+--. ..+. .+.++.+.. ..+|||++..
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~~~----~~iPvV~~~~ 90 (283)
T 2ioy_A 21 NGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQ--KVDVLLINPV--DSDAVVTAIKEANS----KNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCS--STTTTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHc--CCCEEEEeCC--chhhhHHHHHHHHH----CCCeEEEecC
Confidence 334555666799877543 232 345555544 7998887422 2222 245666654 4689988854
No 450
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=26.05 E-value=3.4e+02 Score=24.76 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcC--CCceEEEEecCCCCCcHH-HHHHHHHhccCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEG--SDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~--~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~ 106 (554)
...+|||..-...+-..+...|.+.|++|+. ..+....-+...... ....++.+|+ -+.+.+ ++++.+.+..
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~~~~~-- 80 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDS--SDEDGWTKLFDATEKAF-- 80 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCT--TCHHHHHHHHHHHHHHH--
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCC--CCHHHHHHHHHHHHHHh--
Confidence 4457999999999999999999888998874 455443333322211 1344444554 343333 3455554432
Q ss_pred CCceEEEEec
Q 008761 107 QRIPVIMMSA 116 (554)
Q Consensus 107 ~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 81 ~~id~li~~A 90 (251)
T 1zk4_A 81 GPVSTLVNNA 90 (251)
T ss_dssp SSCCEEEECC
T ss_pred CCCCEEEECC
Confidence 3456666554
No 451
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=26.01 E-value=2.1e+02 Score=28.38 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHhh-CCCEEEE------ECCHHHHHHHHHhcCCCceEEEEecCC-CCCcHHHHHHHHHhccCCCCceEE
Q 008761 41 DSNSSDAVFSLLVK-CSYQVTS------VRSPRQVIDALNAEGSDIDLILAEVDL-PMTKGLKMLKYITRDKELQRIPVI 112 (554)
Q Consensus 41 d~~~r~~L~~lL~~-~g~eV~~------A~dg~EALe~L~~~~~~PDLILLDi~M-P~mDGlElLr~Ir~~~~~~~iPII 112 (554)
.......+++++.. .|..|+. +.|..+|++.|... .++=||..=.- .-.+|++.|++|.+.. . -..|
T Consensus 99 g~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~l--G~~rILTSG~~~~a~~g~~~L~~Lv~~a--~-~i~I 173 (256)
T 1twd_A 99 GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAEL--GIARVLTSGQKSDALQGLSKIMELIAHR--D-APII 173 (256)
T ss_dssp SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHH--TCCEEEECTTSSSTTTTHHHHHHHHTSS--S-CCEE
T ss_pred CCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHc--CCCEEECCCCCCCHHHHHHHHHHHHHhh--C-CcEE
Confidence 33445556666653 3566553 67899999999987 68878775433 3578999999998653 2 2344
Q ss_pred EEecCCCHHHHHHHHHcCCCEEE
Q 008761 113 MMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 113 VLSs~~d~e~~~eAL~aGA~DyL 135 (554)
|..+--..+.+.+.+..|+..|-
T Consensus 174 m~GgGv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 174 MAGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp EEESSCCTTTHHHHHHHTCSEEE
T ss_pred EecCCcCHHHHHHHHHcCCCeEe
Confidence 44443333333344477888775
No 452
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=25.82 E-value=2.5e+02 Score=26.25 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=51.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ--VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~e--V~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
..+|..||-++......+..+...|+. |. ...+..+.+..+.. ...+|+|++|...+ +-..+++.+...- .+
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~--~~~~~l~~~~~~L--kp 162 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKP--NNPHYLRWALRYS--RP 162 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGG--GHHHHHHHHHHTC--CT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchH--HHHHHHHHHHHhc--CC
Confidence 468999999999999999998877642 43 56677766554421 12699999987432 3345566655432 22
Q ss_pred ceEEEEe
Q 008761 109 IPVIMMS 115 (554)
Q Consensus 109 iPIIVLS 115 (554)
-=+|++.
T Consensus 163 GG~lv~~ 169 (248)
T 3tfw_A 163 GTLIIGD 169 (248)
T ss_dssp TCEEEEE
T ss_pred CeEEEEe
Confidence 2355554
No 453
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=25.74 E-value=2.3e+02 Score=27.42 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=54.5
Q ss_pred HhhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCc-HHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHH
Q 008761 52 LVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (554)
Q Consensus 52 L~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP-~mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~ 128 (554)
....|.-+. -+.+..|+...+.. .+|+|=+ .| ..- |.++++.|+.. ++++|++...+ -+.+.+.+.+.
T Consensus 123 ~~~~gi~~ipGv~TptEi~~A~~~---Gad~vK~---FPa~~~gG~~~lkal~~p--~p~ip~~ptGG-I~~~n~~~~l~ 193 (232)
T 4e38_A 123 CQEIGIDIVPGVNNPSTVEAALEM---GLTTLKF---FPAEASGGISMVKSLVGP--YGDIRLMPTGG-ITPSNIDNYLA 193 (232)
T ss_dssp HHHHTCEEECEECSHHHHHHHHHT---TCCEEEE---CSTTTTTHHHHHHHHHTT--CTTCEEEEBSS-CCTTTHHHHHT
T ss_pred HHHcCCCEEcCCCCHHHHHHHHHc---CCCEEEE---CcCccccCHHHHHHHHHH--hcCCCeeeEcC-CCHHHHHHHHH
Confidence 333466554 56799999998865 4888876 55 333 89999999863 46788875444 45678889999
Q ss_pred cCCCEEEe
Q 008761 129 LGAADYLV 136 (554)
Q Consensus 129 aGA~DyL~ 136 (554)
+|+...+.
T Consensus 194 aGa~~~vg 201 (232)
T 4e38_A 194 IPQVLACG 201 (232)
T ss_dssp STTBCCEE
T ss_pred CCCeEEEE
Confidence 99877643
No 454
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=25.72 E-value=3.9e+02 Score=24.43 Aligned_cols=82 Identities=11% Similarity=0.081 Sum_probs=47.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCc-eEEEEecCCCCCcHH-HHHHHHHhccCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDI-DLILAEVDLPMTKGL-KMLKYITRDKEL 106 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~P-DLILLDi~MP~mDGl-ElLr~Ir~~~~~ 106 (554)
+...+|||..-...+-..+...|.+.|++|.. ..+....-+......... .++.+|+. +.+.+ ++++.+.. .
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~-~-- 83 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVT--DAEAMTAAAAEAEA-V-- 83 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTT--CHHHHHHHHHHHHH-H--
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecC--CHHHHHHHHHHHHh-h--
Confidence 34568999999999999999999889998874 445443333222211122 34445543 43333 24444443 2
Q ss_pred CCceEEEEec
Q 008761 107 QRIPVIMMSA 116 (554)
Q Consensus 107 ~~iPIIVLSs 116 (554)
..+-+|+-.+
T Consensus 84 ~~id~li~~A 93 (254)
T 2wsb_A 84 APVSILVNSA 93 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCCcEEEECC
Confidence 3456666654
No 455
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=25.69 E-value=3.9e+02 Score=24.49 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=48.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHH---HHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQ---VIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~E---ALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~ 105 (554)
...+|||..-...+-..|...|.+.|++|+. ..+... ..+.+.....+..++.+|+ -+.+.+ ++++.+.+..
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~--~~~~~~~~~~~~~~~~~- 88 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDV--TNTESVQNAVRSVHEQE- 88 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT--TCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecC--CCHHHHHHHHHHHHHHc-
Confidence 4457999999999999999999888998874 445433 2333433322344444554 343333 3455554432
Q ss_pred CCCceEEEEec
Q 008761 106 LQRIPVIMMSA 116 (554)
Q Consensus 106 ~~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 89 -~~id~vi~~A 98 (260)
T 3awd_A 89 -GRVDILVACA 98 (260)
T ss_dssp -SCCCEEEECC
T ss_pred -CCCCEEEECC
Confidence 3456666554
No 456
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=25.67 E-value=1.8e+02 Score=26.00 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC--cH---HHHHHHHHhccC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT--KG---LKMLKYITRDKE 105 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~m--DG---lElLr~Ir~~~~ 105 (554)
+++||+++-|--.....+. ..++.+... +||+||+-=.+-+. .- .++++.|.+
T Consensus 4 ~~mri~~iSD~H~~~~~~~-----------------~~~~~~~~~--~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~--- 61 (228)
T 1uf3_A 4 TVRYILATSNPMGDLEALE-----------------KFVKLAPDT--GADAIALIGNLMPKAAKSRDYAAFFRILSE--- 61 (228)
T ss_dssp CCCEEEEEECCTTCHHHHH-----------------HHHTHHHHH--TCSEEEEESCSSCTTCCHHHHHHHHHHHGG---
T ss_pred ceEEEEEEeeccCCHHHHH-----------------HHHHHHhhc--CCCEEEECCCCCCCCCCHHHHHHHHHHHHh---
Confidence 4579999998875433332 333444444 68998883333221 11 246666654
Q ss_pred CCCceEEEEecCCC
Q 008761 106 LQRIPVIMMSAQDE 119 (554)
Q Consensus 106 ~~~iPIIVLSs~~d 119 (554)
..+|++++.++-+
T Consensus 62 -~~~pv~~v~GNHD 74 (228)
T 1uf3_A 62 -AHLPTAYVPGPQD 74 (228)
T ss_dssp -GCSCEEEECCTTS
T ss_pred -cCCcEEEECCCCC
Confidence 2468988888665
No 457
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=25.63 E-value=2.6e+02 Score=26.88 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=35.9
Q ss_pred HHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCC--ceEEEEecCCCCCcHH-HHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSD--IDLILAEVDLPMTKGL-KMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~--PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+...+...||++..+. +.. +.++.+... . +|.||+-.. ..+.. ++++.+.. ..+|||++..
T Consensus 25 ~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~--~~~vdgiIi~~~--~~~~~~~~~~~~~~----~~iPvV~~~~ 96 (332)
T 2rjo_A 25 KGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQK--TGGNLVLNVDPN--DSADARVIVEACSK----AGAYVTTIWN 96 (332)
T ss_dssp HHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHH--TTTCEEEEECCS--SHHHHHHHHHHHHH----HTCEEEEESC
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHC--CCCCCEEEEeCC--CHHHHHHHHHHHHH----CCCeEEEECC
Confidence 344555566788876443 232 345555555 6 998887422 11222 45666654 3579888854
No 458
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=25.62 E-value=2.5e+02 Score=26.56 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 44 ~r~~L~~lL~~~g~eV~~A~---dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
+...+...+...||.+..+. +.. +.++.+... .+|.||+...-+.. -.++++.+.. ..+|||++..
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~~~~~-~~~~~~~~~~----~~iPvV~~~~ 91 (313)
T 3m9w_A 20 DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR--GVDVLVIIPYNGQV-LSNVVKEAKQ----EGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEEECSSTTS-CHHHHHHHHT----TTCEEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHc--CCCEEEEeCCChhh-hHHHHHHHHH----CCCeEEEECC
Confidence 44556666777899877543 232 345555555 79988886443221 1356677764 4689988864
No 459
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=25.58 E-value=1.2e+02 Score=30.89 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCCCHH
Q 008761 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPLRTN 142 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~Dy-L~KP~~~e 142 (554)
+.++|++.++... ..++ .++--++ -++.+++|++. ..+||+.-=...+.....++++.|+.|+ ..|+...-
T Consensus 201 ~~~~a~~~~~~l~-~~~i-~iE~P~~---~~~~~~~l~~~---~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~G 272 (379)
T 2rdx_A 201 RVDNAIRLARATR-DLDY-ILEQPCR---SYEECQQVRRV---ADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLG 272 (379)
T ss_dssp CHHHHHHHHHHTT-TSCC-EEECCSS---SHHHHHHHHTT---CCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTT
T ss_pred CHHHHHHHHHHHH-hCCe-EEeCCcC---CHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccC
Confidence 5788888887653 4666 6654444 57777888764 4688875545567788888999886665 67886543
Q ss_pred HH
Q 008761 143 EL 144 (554)
Q Consensus 143 eL 144 (554)
-+
T Consensus 273 Gi 274 (379)
T 2rdx_A 273 GL 274 (379)
T ss_dssp SH
T ss_pred CH
Confidence 33
No 460
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=25.56 E-value=2.9e+02 Score=23.00 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=46.9
Q ss_pred CCCCCcCCCCCcEEEEEeCCHHHHH-----HHHHHHhhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH
Q 008761 22 SSGDGFIDRSKVRILLCDNDSNSSD-----AVFSLLVKCSYQ-V-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94 (554)
Q Consensus 22 ~~~~~~~~mskirVLIVDDd~~~r~-----~L~~lL~~~g~e-V-~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl 94 (554)
.||+..-...+.+||+|=+.-.-.. .|++.+...|++ + +.+.+..+.-..+ . .+|+||+-..+...-.
T Consensus 8 ~~~~~~~~~~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~--~--~~DlIi~t~~l~~~~~- 82 (110)
T 3czc_A 8 TGGQQMGRGSMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLA--S--NYDIVVASNHLIHELD- 82 (110)
T ss_dssp ----------CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHG--G--GCSEEEEETTTGGGTT-
T ss_pred cccccccccCCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhcc--C--CCcEEEECCchHHHhC-
Confidence 3566654444678877766553322 455667777876 4 4555666665443 2 5899999877652211
Q ss_pred HHHHHHHhccCCCCceEEEEecCCCHHHHH
Q 008761 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (554)
Q Consensus 95 ElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~ 124 (554)
. .+..|++.+...-+.+...
T Consensus 83 --------~--~~~~~vi~i~~~l~~~ei~ 102 (110)
T 3czc_A 83 --------G--RTNGKLIGLDNLMDDNEIK 102 (110)
T ss_dssp --------T--SCSSEEEEESSTTCHHHHH
T ss_pred --------c--CCCceEEEeeccCCHHHHH
Confidence 1 1456888887766555443
No 461
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=25.50 E-value=1.5e+02 Score=29.83 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=43.7
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 60 ~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
+.+.+.+|+.+.+.. .+|+|.+|-.-| +.++++.+... .+ ..|..|+.-+.+.+.+..+.|++-+-
T Consensus 203 VEv~tl~ea~eAl~a---GaD~I~LDn~~~-----~~l~~av~~~~-~~-v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 203 VEVTNLDELNQAIAA---KADIVMLDNFSG-----EDIDIAVSIAR-GK-VALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEESSHHHHHHHHHT---TCSEEEEESCCH-----HHHHHHHHHHT-TT-CEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEEcCCCH-----HHHHHHHHhhc-CC-ceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 378999999999875 489999997433 22232222110 22 45667777777778788888887653
No 462
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=25.44 E-value=1.9e+02 Score=26.87 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=38.0
Q ss_pred CHHHHH---HHHHHHhhCCCEEEEEC---CHHH---HHHHHHhcCCCceEEEEecCCCCCcH-HHHHHHHHhccCCCCce
Q 008761 41 DSNSSD---AVFSLLVKCSYQVTSVR---SPRQ---VIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIP 110 (554)
Q Consensus 41 d~~~r~---~L~~lL~~~g~eV~~A~---dg~E---ALe~L~~~~~~PDLILLDi~MP~mDG-lElLr~Ir~~~~~~~iP 110 (554)
++.+.. .+.+.+...||.+..+. +... .++.+... ++|-||+--. ..+. .+.++.+.. ..+|
T Consensus 13 ~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~~~----~~iP 84 (271)
T 2dri_A 13 NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR--GTKILLINPT--DSDAVGNAVKMANQ----ANIP 84 (271)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTT--TEEEEEECCS--STTTTHHHHHHHHH----TTCC
T ss_pred CHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEeCC--ChHHHHHHHHHHHH----CCCc
Confidence 444443 34555666799877543 3322 34444433 7999887432 2222 245666654 4689
Q ss_pred EEEEec
Q 008761 111 VIMMSA 116 (554)
Q Consensus 111 IIVLSs 116 (554)
||++-.
T Consensus 85 vV~i~~ 90 (271)
T 2dri_A 85 VITLDR 90 (271)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 988854
No 463
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=25.30 E-value=3.3e+02 Score=25.28 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=49.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~ 108 (554)
...+|||..-..-+-..+...|.+.|+.|+.+ .+...+.+...........+-+|+ -+.+.+ ++++.+.+.. ..
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv--~d~~~v~~~~~~~~~~~--g~ 83 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNV--TNPESIEAVLKAITDEF--GG 83 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCT--TCHHHHHHHHHHHHHHH--CC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeC--CCHHHHHHHHHHHHHHc--CC
Confidence 44578999999999999999999999988744 454433333332211233444444 444443 3556665432 45
Q ss_pred ceEEEEec
Q 008761 109 IPVIMMSA 116 (554)
Q Consensus 109 iPIIVLSs 116 (554)
+-+|+-.+
T Consensus 84 iD~lv~nA 91 (248)
T 3op4_A 84 VDILVNNA 91 (248)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 66776654
No 464
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=25.27 E-value=2.7e+02 Score=25.33 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=48.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHH---HHHHh-cCCCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVI---DALNA-EGSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EAL---e~L~~-~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
...+|||..-...+-..+...|.+.|++|.. ..+....- +.+.. . ...+.++...+-+.+.+ ++++.+.+..
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY--GVKAHGVEMNLLSEESINKAFEEIYNLV 83 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc--CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3457899999999999999999888998874 44543322 22221 1 12344444444444443 3555555432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 84 --~~~d~vi~~A 93 (248)
T 2pnf_A 84 --DGIDILVNNA 93 (248)
T ss_dssp --SCCSEEEECC
T ss_pred --CCCCEEEECC
Confidence 4566666654
No 465
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=25.15 E-value=1.4e+02 Score=27.35 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=47.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCC
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~ 108 (554)
+...+|||..-...+-..+...|.+.|++|.. ..+...+.+..... ....++.+|+. + .+-++.+... ...
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~--~---~~~~~~~~~~--~~~ 76 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-PGIEPVCVDLG--D---WDATEKALGG--IGP 76 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-TTCEEEECCTT--C---HHHHHHHHTT--CCC
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-cCCCcEEecCC--C---HHHHHHHHHH--cCC
Confidence 34568999999999999999999989998874 45554443333322 13456655554 2 2233333321 234
Q ss_pred ceEEEEec
Q 008761 109 IPVIMMSA 116 (554)
Q Consensus 109 iPIIVLSs 116 (554)
+-+|+-.+
T Consensus 77 id~vi~~A 84 (244)
T 1cyd_A 77 VDLLVNNA 84 (244)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 56666554
No 466
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=25.14 E-value=3.3e+02 Score=26.03 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=52.0
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhc-CCCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~-~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
+.+....|||..-..-+-..+...|.+.|+.|+. ..+...+.+...+. .....+.++.+++-+.+.+ ++++.+.+..
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3344557899999999999999999999998874 44544333332221 1124555555555555444 4566665432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+||..+
T Consensus 104 --g~iD~lVnnA 113 (283)
T 3v8b_A 104 --GHLDIVVANA 113 (283)
T ss_dssp --SCCCEEEECC
T ss_pred --CCCCEEEECC
Confidence 4566776654
No 467
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=25.12 E-value=1.6e+02 Score=29.13 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=29.7
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcH
Q 008761 32 KVRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93 (554)
Q Consensus 32 kirVLIVDDd~~---~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDG 93 (554)
..+|++++-+.. ..+.|.......|..+....++.+....+... ..+|+||+| .++.+.
T Consensus 134 G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~~ 195 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRNF 195 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCCT
T ss_pred CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCCh
Confidence 357888887652 22233333333344333334444333333222 269999999 455443
No 468
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=25.03 E-value=2.6e+02 Score=26.25 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=47.5
Q ss_pred hhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCcH-----------HHHHHHHHhccCCCCceEEEEecCCCH
Q 008761 53 VKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG-----------LKMLKYITRDKELQRIPVIMMSAQDEV 120 (554)
Q Consensus 53 ~~~g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDG-----------lElLr~Ir~~~~~~~iPIIVLSs~~d~ 120 (554)
...|..+. ++.+..+.... ... .+++|-+.-...-..| -+.++.++... ..+||++-.+-...
T Consensus 108 ~~~Gl~~iv~v~~~~e~~~~-~~~--~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~--~~~~ii~ggGI~~~ 182 (219)
T 2h6r_A 108 KNLGLETIVCTNNINTSKAV-AAL--SPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEIN--KDVKVLCGAGISKG 182 (219)
T ss_dssp HHHTCEEEEEESSSHHHHHH-TTT--CCSEEEECCCC--------------CSHHHHHHHHHHC--TTCEEEECSSCCSH
T ss_pred HHCCCeEEEEeCCchHHHHH-HhC--CCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhcc--CCCeEEEEeCcCcH
Confidence 44587755 66666654333 322 4677766543320022 23455555542 36788877777777
Q ss_pred HHHHHHHHcCCCEEEe
Q 008761 121 SVVVKCLRLGAADYLV 136 (554)
Q Consensus 121 e~~~eAL~aGA~DyL~ 136 (554)
+.+..+...|++.+|.
T Consensus 183 ~~~~~~~~~gaDgvlV 198 (219)
T 2h6r_A 183 EDVKAALDLGAEGVLL 198 (219)
T ss_dssp HHHHHHHTTTCCCEEE
T ss_pred HHHHHHhhCCCCEEEE
Confidence 8888889999999975
No 469
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=25.00 E-value=79 Score=32.59 Aligned_cols=57 Identities=12% Similarity=-0.034 Sum_probs=41.4
Q ss_pred HHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe------C-CCCHHHHHHHHHHHH
Q 008761 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV------K-PLRTNELLNLWTHMW 152 (554)
Q Consensus 94 lElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~------K-P~~~eeL~~~L~~ll 152 (554)
++++.+|++. ...+|||....-.+.+.+.+++.+||+.+.. . |.-..++...+...+
T Consensus 265 ~~~i~~v~~~--~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m 328 (354)
T 4ef8_A 265 LANINAFYRR--CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVM 328 (354)
T ss_dssp HHHHHHHHHH--CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHH
Confidence 7788888875 2579999999989999999999999977643 2 544444544444443
No 470
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=25.00 E-value=3.1e+02 Score=26.01 Aligned_cols=81 Identities=9% Similarity=0.083 Sum_probs=50.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCH----HHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSP----RQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg----~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~ 105 (554)
.-.|||..-..-+-..+...|.+.|+.|+.+ .+. ++..+.+... ...+..+...+-+.+.+ ++++.+.+..
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 107 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA--GGRAVAIRADNRDAEAIEQAIRETVEAL- 107 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence 4579999999999999999999999988754 332 2233344433 34455555555555544 3556665432
Q ss_pred CCCceEEEEec
Q 008761 106 LQRIPVIMMSA 116 (554)
Q Consensus 106 ~~~iPIIVLSs 116 (554)
..+-+||-.+
T Consensus 108 -g~iD~lvnnA 117 (271)
T 3v2g_A 108 -GGLDILVNSA 117 (271)
T ss_dssp -SCCCEEEECC
T ss_pred -CCCcEEEECC
Confidence 4566776654
No 471
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=24.94 E-value=3.6e+02 Score=25.21 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=40.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEecCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEVDL 88 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-------dg~EALe~L~~~~~~PDLILLDi~M 88 (554)
...+|||..-.-.+-..|...|...|++|.... +.+...+.+... .+|+|+.-...
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~--~~d~vih~A~~ 73 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEK--KPNVVINCAAH 73 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHH--CCSEEEECCCC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhc--CCCEEEECCcc
Confidence 357999999999999999999988899888543 333334444433 58998865544
No 472
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=24.89 E-value=3.3e+02 Score=25.59 Aligned_cols=83 Identities=11% Similarity=0.168 Sum_probs=53.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC----C---HHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHH
Q 008761 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR----S---PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYIT 101 (554)
Q Consensus 30 mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~----d---g~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir 101 (554)
+..-.|||..-..-+-..+...|.+.|+.|+.+. + .++..+.+... ...+.++.+++-+.+.+ .+++.+.
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3455799999999999999999999999887542 2 22333344333 34666665555565554 3566665
Q ss_pred hccCCCCceEEEEec
Q 008761 102 RDKELQRIPVIMMSA 116 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs 116 (554)
+.. ..+-+||-.+
T Consensus 87 ~~~--g~iD~lvnnA 99 (262)
T 3ksu_A 87 KEF--GKVDIAINTV 99 (262)
T ss_dssp HHH--CSEEEEEECC
T ss_pred HHc--CCCCEEEECC
Confidence 532 4566666654
No 473
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=24.81 E-value=2.1e+02 Score=28.43 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCCceEEEEe-c--CCCC---Cc-HHHHHHHHHhccCCCCceEEEEecCCC------HHHHHHHHHcCC
Q 008761 65 PRQVIDALNAEGSDIDLILAE-V--DLPM---TK-GLKMLKYITRDKELQRIPVIMMSAQDE------VSVVVKCLRLGA 131 (554)
Q Consensus 65 g~EALe~L~~~~~~PDLILLD-i--~MP~---mD-GlElLr~Ir~~~~~~~iPIIVLSs~~d------~e~~~eAL~aGA 131 (554)
...|++.+...+ .++++||. . .-|. .+ -+..+..|++. .++|||+.+++.. ......|..+||
T Consensus 161 i~~Ave~i~~~G-n~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~---~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga 236 (276)
T 1vs1_A 161 LLAAAEYILLEG-NWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEA---THLPVIVDPSHPAGRRSLVPALAKAGLAAGA 236 (276)
T ss_dssp HHHHHHHHHHTT-CCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHH---BSSCEEECCHHHHCSGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC-CCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHH---hCCCEEEeCCCCCCccchHHHHHHHHHHcCC
Confidence 455777776643 67999988 3 2232 11 34445556553 3678888777532 466788899999
Q ss_pred CEE-EeCCC
Q 008761 132 ADY-LVKPL 139 (554)
Q Consensus 132 ~Dy-L~KP~ 139 (554)
++. |.|-+
T Consensus 237 ~Gl~IE~H~ 245 (276)
T 1vs1_A 237 DGLIVEVHP 245 (276)
T ss_dssp SEEEEEBCS
T ss_pred CEEEEEecC
Confidence 865 55654
No 474
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=24.77 E-value=1.3e+02 Score=31.16 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=47.3
Q ss_pred CcEEEEEeCCHHH-----------HHHHHHHHhhCCCEEE-EECCH-H-----HHHHHHHhcCCCceEEEEecCCCC---
Q 008761 32 KVRILLCDNDSNS-----------SDAVFSLLVKCSYQVT-SVRSP-R-----QVIDALNAEGSDIDLILAEVDLPM--- 90 (554)
Q Consensus 32 kirVLIVDDd~~~-----------r~~L~~lL~~~g~eV~-~A~dg-~-----EALe~L~~~~~~PDLILLDi~MP~--- 90 (554)
..+|+++.|+-.. -..|.+.| +++|+ ..-+| . ...+.+... +||+|++.+-..+
T Consensus 185 ~~~Iv~~GDSiT~G~g~~~~~~~w~~~la~~l---~~~viN~GisG~~~~~~~~~~~~l~~~--~pdlVvI~lGtND~~~ 259 (385)
T 3skv_A 185 KPHWIHYGDSICHGRGAASPSRTWLALAARAE---GLDLQSLSFAADGSHLQPMFARLIRDL--PADLISLRVGTSNFMD 259 (385)
T ss_dssp CCEEEEEECSSCTTTTCSSGGGSHHHHHHHHH---TCEEEEECCTGGGGSCCHHHHHHHHHS--CCSEEEEEESHHHHTT
T ss_pred CceEEEEeccccCCCCCCCCCCCHHHHHHHhc---CCcEEEeecCCCcccHHHHHHHHHhcc--CCCEEEEEeeccCCCC
Confidence 5689999998642 22333333 56666 33355 2 233444444 7999999763221
Q ss_pred -C--cH-----HHHHHHHHhccCCCCceEEEEecC
Q 008761 91 -T--KG-----LKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 91 -m--DG-----lElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
+ +- ..+++.|++.. +.++||+++..
T Consensus 260 ~~~~~~~~~~l~~li~~ir~~~--P~a~Illv~p~ 292 (385)
T 3skv_A 260 GDGFVDFPANLVGFVQIIRERH--PLTPIVLGSSV 292 (385)
T ss_dssp TCCTTTHHHHHHHHHHHHHTTC--SSSCEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHC--CCCcEEEEcCC
Confidence 1 11 34778887653 67899999864
No 475
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=24.76 E-value=3.8e+02 Score=25.07 Aligned_cols=81 Identities=10% Similarity=0.031 Sum_probs=50.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHH-HHHHHHhccCCCCc
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLK-MLKYITRDKELQRI 109 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlE-lLr~Ir~~~~~~~i 109 (554)
.-+|||..-..-+-..+...|.+.|+.|+. ..+.+.+.+...+. ...+.++..++-+.+.++ +++.+.+.. ..+
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--g~i 83 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF--GPRVHALRSDIADLNEIAVLGAAAGQTL--GAI 83 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHH--SSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHHh--CCC
Confidence 347899999999999999999999998874 44544443333332 234444444444554443 555554432 456
Q ss_pred eEEEEec
Q 008761 110 PVIMMSA 116 (554)
Q Consensus 110 PIIVLSs 116 (554)
-+|+..+
T Consensus 84 d~lv~nA 90 (255)
T 4eso_A 84 DLLHINA 90 (255)
T ss_dssp EEEEECC
T ss_pred CEEEECC
Confidence 6666554
No 476
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=24.76 E-value=3.3e+02 Score=27.70 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=55.8
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCC
Q 008761 34 RILLCDNDSNS----SDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (554)
Q Consensus 34 rVLIVDDd~~~----r~~L~~lL~~~g~--eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~ 107 (554)
.|||-|..-.+ ...+..+-+..+. -.+.+.+.+++.+.+.. .+|+|.+|-. +- +.++++.+.-. .
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~----~~-~~l~~av~~l~-~ 274 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNF----SL-EMMREAVKINA-G 274 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESC----CH-HHHHHHHHHHT-T
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCC----CH-HHHHHHHHHhC-C
Confidence 46766654332 2333333223332 23488899999988875 4899999963 32 33333332210 2
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 108 RIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 108 ~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
+ ..|..|+.-+.+.+.+..+.|++-|-
T Consensus 275 ~-v~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 275 R-AALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp S-SEEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred C-CeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3 45667888888888888899986553
No 477
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=24.65 E-value=3.5e+02 Score=26.12 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=50.3
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEE--EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCc----------HHHHHHHHHh
Q 008761 36 LLCDNDSNSSDAVFSLLVKCSYQVT--SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTK----------GLKMLKYITR 102 (554)
Q Consensus 36 LIVDDd~~~r~~L~~lL~~~g~eV~--~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mD----------GlElLr~Ir~ 102 (554)
++.|-.......+...+.+.|+.++ .+. +..+-++.+.... ...+.+. .+.+.. -.+++++|++
T Consensus 127 ii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a--~gfiy~v-s~~g~TG~~~~~~~~~~~~~v~~vr~ 203 (262)
T 2ekc_A 127 IVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAA--DEMTYFV-SVTGTTGAREKLPYERIKKKVEEYRE 203 (262)
T ss_dssp ECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHC--SSCEEEE-SSCC---------CHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCCEEEE-ecCCccCCCCCcCcccHHHHHHHHHh
Confidence 3333333334555666667776643 222 2233333333332 2334443 222221 2367788876
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
. ..+||++=.+-.+.+.+.+ +..||+..+.=
T Consensus 204 ~---~~~pv~vG~GI~t~e~~~~-~~~gADgvIVG 234 (262)
T 2ekc_A 204 L---CDKPVVVGFGVSKKEHARE-IGSFADGVVVG 234 (262)
T ss_dssp H---CCSCEEEESSCCSHHHHHH-HHTTSSEEEEC
T ss_pred h---cCCCEEEeCCCCCHHHHHH-HHcCCCEEEEC
Confidence 4 4678766444555666666 89999999874
No 478
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=24.51 E-value=3.1e+02 Score=23.49 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=41.8
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHHHHHH
Q 008761 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP--LRTNELLNLWTHMWRRR 155 (554)
Q Consensus 78 ~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP--~~~eeL~~~L~~llr~~ 155 (554)
..|++|+- . -+..+++.+. ..+|+|++....+.....+.+...-..++..+ ++.++|...|..++...
T Consensus 86 ~ad~~I~~---~--G~~t~~Ea~~-----~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 86 KTRAFITH---G--GANGIYEAIY-----HGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155 (170)
T ss_dssp TEEEEEEC---C--CHHHHHHHHH-----HTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCH
T ss_pred CcCEEEEc---C--CccHHHHHHH-----cCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCH
Confidence 46777762 1 1344555554 35799988765554444444544445565555 37789999998887543
Q ss_pred H
Q 008761 156 R 156 (554)
Q Consensus 156 r 156 (554)
.
T Consensus 156 ~ 156 (170)
T 2o6l_A 156 S 156 (170)
T ss_dssp H
T ss_pred H
Confidence 3
No 479
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=24.46 E-value=1.1e+02 Score=25.74 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=50.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCce
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iP 110 (554)
...|.++|.++...+.+. ..++.+.... .-.+.++.+... ..|+|++-.. ....-+.++..++.. ....
T Consensus 29 g~~V~~id~~~~~~~~~~----~~~~~~~~gd~~~~~~l~~~~~~--~~d~vi~~~~-~~~~n~~~~~~a~~~---~~~~ 98 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLE----DEGFDAVIADPTDESFYRSLDLE--GVSAVLITGS-DDEFNLKILKALRSV---SDVY 98 (141)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEECCTTCHHHHHHSCCT--TCSEEEECCS-CHHHHHHHHHHHHHH---CCCC
T ss_pred CCeEEEEECCHHHHHHHH----HCCCcEEECCCCCHHHHHhCCcc--cCCEEEEecC-CHHHHHHHHHHHHHh---CCce
Confidence 568999999987654443 3466655432 223344433222 6898887544 111224445555543 2345
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008761 111 VIMMSAQDEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 111 IIVLSs~~d~e~~~eAL~aGA~DyL~ 136 (554)
||+..... .......++|++..+.
T Consensus 99 iia~~~~~--~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 99 AIVRVSSP--KKKEEFEEAGANLVVL 122 (141)
T ss_dssp EEEEESCG--GGHHHHHHTTCSEEEE
T ss_pred EEEEEcCh--hHHHHHHHcCCCEEEC
Confidence 55544433 2344567889865554
No 480
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=24.43 E-value=4.3e+02 Score=24.50 Aligned_cols=84 Identities=10% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHHHHHHHHhcCC--CceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSPRQVIDALNAEGS--DIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 29 ~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg~EALe~L~~~~~--~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
.+...+|||..-..-+-..+...|.+.|++|+.+ .+....-+....... ...++.+|+. +.+.+ ++++.+.+..
T Consensus 13 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVT--KDEDVRNLVDTTIAKH 90 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTT--CHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCC--CHHHHHHHHHHHHHHc
Confidence 3455689999999999999999998899988754 444333222222111 2344445543 43333 3445554432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 91 --~~id~li~~A 100 (278)
T 2bgk_A 91 --GKLDIMFGNV 100 (278)
T ss_dssp --SCCCEEEECC
T ss_pred --CCCCEEEECC
Confidence 3456666543
No 481
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=24.39 E-value=1.3e+02 Score=29.79 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=31.6
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHhhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEec
Q 008761 32 KVRILLCDNDS---NSSDAVFSLLVKCSYQVTSVR---SPR----QVIDALNAEGSDIDLILAEV 86 (554)
Q Consensus 32 kirVLIVDDd~---~~r~~L~~lL~~~g~eV~~A~---dg~----EALe~L~~~~~~PDLILLDi 86 (554)
..+|+++|-+. .....|.......|+.+.... +.. ++++.+... .+|+||+|.
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~--~~D~ViIDT 188 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE--KMEIIIVDT 188 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 45899999873 333444444444466555432 333 455555433 689999998
No 482
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=24.34 E-value=4.5e+02 Score=24.68 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=53.0
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHH---HHHHHh-cCCCceEEEEecCCCCCcHH-HHHHHHH
Q 008761 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQV---IDALNA-EGSDIDLILAEVDLPMTKGL-KMLKYIT 101 (554)
Q Consensus 28 ~~mskirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg~EA---Le~L~~-~~~~PDLILLDi~MP~mDGl-ElLr~Ir 101 (554)
+.+...+|||..-..-+-..+...|.+.|+.|+. ..+...+ .+.+.. . ...+.++-+++-+.+.+ ++++.+.
T Consensus 16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF--GTDVHTVAIDLAEPDAPAELARRAA 93 (266)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3444568999999999999999999999998874 4454433 333332 2 23444444444455554 4666666
Q ss_pred hccCCCCceEEEEec
Q 008761 102 RDKELQRIPVIMMSA 116 (554)
Q Consensus 102 ~~~~~~~iPIIVLSs 116 (554)
+.. ..+-+||-.+
T Consensus 94 ~~~--g~id~lv~nA 106 (266)
T 4egf_A 94 EAF--GGLDVLVNNA 106 (266)
T ss_dssp HHH--TSCSEEEEEC
T ss_pred HHc--CCCCEEEECC
Confidence 543 4567777665
No 483
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=24.33 E-value=2.7e+02 Score=27.41 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=58.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEE--EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCc---------HHHHHHHHHh
Q 008761 35 ILLCDNDSNSSDAVFSLLVKCSYQVT--SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTK---------GLKMLKYITR 102 (554)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~g~eV~--~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mD---------GlElLr~Ir~ 102 (554)
|+|.|=...-...+...+...|..++ .+. +..+-++.+... ..+.|.+=- +.+.. -.+++++|++
T Consensus 129 vIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~--~~gfiY~vs-~~GvTG~~~~~~~~~~~~v~~vr~ 205 (271)
T 3nav_A 129 VLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQL--GKGYTYLLS-RAGVTGAETKANMPVHALLERLQQ 205 (271)
T ss_dssp EEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHH--CCSCEEECC-CC--------CCHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHH--CCCeEEEEe-ccCCCCcccCCchhHHHHHHHHHH
Confidence 34444444445567777788887643 333 334555555554 345554411 22211 2467888886
Q ss_pred ccCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008761 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (554)
Q Consensus 103 ~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL~KP 138 (554)
. ..+||++=-+-.+.+.+.+++..||+..|.-.
T Consensus 206 ~---~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 206 F---DAPPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp T---TCCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred h---cCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 4 46888764455567778779999999998753
No 484
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=24.29 E-value=3.2e+02 Score=25.90 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=50.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-EC-CHH---HHHHHHHhcCCCceEEEEecCCCCCcHHH-HHHHHHhcc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VR-SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLK-MLKYITRDK 104 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~-dg~---EALe~L~~~~~~PDLILLDi~MP~mDGlE-lLr~Ir~~~ 104 (554)
..-.|||..-..-+-..+...|.+.|+.|.. .. +.. +..+.+... ...+.++.+++-+.+.++ +++.+.+..
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~v~~~~~~~~~~~ 104 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA--GGEAFAVKADVSQESEVEALFAAVIERW 104 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3457888899999999999999999998874 33 322 233333333 234555544455555543 556665432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+||-.+
T Consensus 105 --g~id~lv~nA 114 (269)
T 4dmm_A 105 --GRLDVLVNNA 114 (269)
T ss_dssp --SCCCEEEECC
T ss_pred --CCCCEEEECC
Confidence 4566776654
No 485
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=24.15 E-value=2.5e+02 Score=26.31 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHhhCCCEEEEEC--CHHH---HHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEec
Q 008761 46 DAVFSLLVKCSYQVTSVR--SPRQ---VIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (554)
Q Consensus 46 ~~L~~lL~~~g~eV~~A~--dg~E---ALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs 116 (554)
..+.+.+...||++..+. +... .++.+... ++|.||+.-.-+. ....+++.+.. ..+|||++..
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiii~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 90 (306)
T 8abp_A 22 KFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAAS--GAKGFVICTPDPK-LGSAIVAKARG----YDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHT--TCCEEEEECSCGG-GHHHHHHHHHH----TTCEEEEESS
T ss_pred HHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeCCCch-hhHHHHHHHHH----CCCcEEEeCC
Confidence 334455556688876443 4433 34444444 6999887543221 22345666665 4689998874
No 486
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=24.11 E-value=4.1e+02 Score=24.52 Aligned_cols=82 Identities=9% Similarity=0.075 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCH-HHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSP-RQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~-A~dg-~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~ 107 (554)
...+|||..-..-+-..+...|.+.|+.|+. ..+. ..+.+.+... ...+.++.+++-+.+.+ ++++.+.+.. .
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--g 81 (249)
T 2ew8_A 6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVISTF--G 81 (249)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH--S
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHc--C
Confidence 3457999999999999999999999998874 4444 3333344433 23444444444444443 3455554432 4
Q ss_pred CceEEEEec
Q 008761 108 RIPVIMMSA 116 (554)
Q Consensus 108 ~iPIIVLSs 116 (554)
.+-+||-.+
T Consensus 82 ~id~lv~nA 90 (249)
T 2ew8_A 82 RCDILVNNA 90 (249)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEECC
Confidence 566666654
No 487
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=24.10 E-value=3.4e+02 Score=25.23 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=51.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~ 108 (554)
..-.|||..-..-+-..+...|.+.|+.|+.+. +.+.+.+.+... ...+..+-+++-+.+.+ ++++.+.+.. ..
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--g~ 80 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQALT--GG 80 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHHHH--SC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHC--CC
Confidence 345789999999999999999999999988554 554444444433 23444444444444443 3566665532 45
Q ss_pred ceEEEEec
Q 008761 109 IPVIMMSA 116 (554)
Q Consensus 109 iPIIVLSs 116 (554)
+-+||-.+
T Consensus 81 id~lv~nA 88 (247)
T 3rwb_A 81 IDILVNNA 88 (247)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 66776654
No 488
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=24.09 E-value=1.4e+02 Score=26.81 Aligned_cols=85 Identities=13% Similarity=0.205 Sum_probs=41.4
Q ss_pred cEEEEEeCCH-HHHHHHHHHHhhCCC---------EEEEECCHH---HHHHHHHhcCC-CceEEEEecCCCCCcH-----
Q 008761 33 VRILLCDNDS-NSSDAVFSLLVKCSY---------QVTSVRSPR---QVIDALNAEGS-DIDLILAEVDLPMTKG----- 93 (554)
Q Consensus 33 irVLIVDDd~-~~r~~L~~lL~~~g~---------eV~~A~dg~---EALe~L~~~~~-~PDLILLDi~MP~mDG----- 93 (554)
-+|++++-+. .....+...+...++ .+....++. ..++.+..... .|++||+|--...++.
T Consensus 46 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~ 125 (220)
T 2cvh_A 46 KKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRS 125 (220)
T ss_dssp SEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchH
Confidence 4778887554 112334444444443 222333332 24444433222 4999999975444332
Q ss_pred ------HHHHHHHHhccCCCCceEEEEecC
Q 008761 94 ------LKMLKYITRDKELQRIPVIMMSAQ 117 (554)
Q Consensus 94 ------lElLr~Ir~~~~~~~iPIIVLSs~ 117 (554)
.++++.|+.......++||+++..
T Consensus 126 ~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~ 155 (220)
T 2cvh_A 126 GLIAELSRQLQVLLWIARKHNIPVIVINQV 155 (220)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeeE
Confidence 234333433221135778877654
No 489
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=24.05 E-value=2.5e+02 Score=26.06 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=40.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEec---C-CCCC-cHHHHHHHHHhccCCCCceEEEEecCCCH-HHHHHHHHcCCCEEEeC
Q 008761 64 SPRQVIDALNAEGSDIDLILAEV---D-LPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEV-SVVVKCLRLGAADYLVK 137 (554)
Q Consensus 64 dg~EALe~L~~~~~~PDLILLDi---~-MP~m-DGlElLr~Ir~~~~~~~iPIIVLSs~~d~-e~~~eAL~aGA~DyL~K 137 (554)
+..+.++.+.+. ..|+|=+++ . .|.. .|++++++|++. ...|+++..-..+. ..+..+.++||+.....
T Consensus 24 ~~~~~i~~~~~~--G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~---~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh 98 (230)
T 1rpx_A 24 KLGEQVKAIEQA--GCDWIHVDVMDGRFVPNITIGPLVVDSLRPI---TDLPLDVHLMIVEPDQRVPDFIKAGADIVSVH 98 (230)
T ss_dssp GHHHHHHHHHHT--TCCCEEEEEEBSSSSSCBCCCHHHHHHHGGG---CCSCEEEEEESSSHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHC--CCCEEEEeeccCCcccccccCHHHHHHHHhc---cCCcEEEEEEecCHHHHHHHHHHcCCCEEEEE
Confidence 344555555443 355554543 1 1222 468999999875 24455443333333 46778899999988665
Q ss_pred CC
Q 008761 138 PL 139 (554)
Q Consensus 138 P~ 139 (554)
..
T Consensus 99 ~~ 100 (230)
T 1rpx_A 99 CE 100 (230)
T ss_dssp CS
T ss_pred ec
Confidence 54
No 490
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=23.98 E-value=2.6e+02 Score=26.87 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=52.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCCceEE
Q 008761 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRIPVI 112 (554)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~g~eV~~A~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~iPII 112 (554)
+|||-.-..-+-..+...|.+.|+.|..+.--++.++.+.+. .++++.+-.++-+.+.+ ++++.+.+.. ..+-|+
T Consensus 4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~v~~~~~~~--g~iDiL 79 (247)
T 3ged_A 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE--RPNLFYFHGDVADPLTLKKFVEYAMEKL--QRIDVL 79 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT--CTTEEEEECCTTSHHHHHHHHHHHHHHH--SCCCEE
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--cCCEEEEEecCCCHHHHHHHHHHHHHHc--CCCCEE
Confidence 688888999999999999999999988555444455555544 45565555555454443 3555555432 566777
Q ss_pred EEec
Q 008761 113 MMSA 116 (554)
Q Consensus 113 VLSs 116 (554)
|-.+
T Consensus 80 VNNA 83 (247)
T 3ged_A 80 VNNA 83 (247)
T ss_dssp EECC
T ss_pred EECC
Confidence 6544
No 491
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=23.97 E-value=3.1e+02 Score=26.83 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=52.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHH---HHHHHHhcCCCceEEEEecCCCCCcHHH-HHHHHHhccCC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQ---VIDALNAEGSDIDLILAEVDLPMTKGLK-MLKYITRDKEL 106 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~-~A~dg~E---ALe~L~~~~~~PDLILLDi~MP~mDGlE-lLr~Ir~~~~~ 106 (554)
.-+|||..-+.-+...|...|.+.|+.|+ +..+... +.+.+........+.++-+++-+.+.++ +++.+....
T Consensus 8 ~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-- 85 (319)
T 3ioy_A 8 GRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF-- 85 (319)
T ss_dssp TCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT--
T ss_pred CCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC--
Confidence 34799999999999999999988999887 4455443 3333433311125555555555555543 556665542
Q ss_pred CCceEEEEec
Q 008761 107 QRIPVIMMSA 116 (554)
Q Consensus 107 ~~iPIIVLSs 116 (554)
..+-+||..+
T Consensus 86 g~id~lv~nA 95 (319)
T 3ioy_A 86 GPVSILCNNA 95 (319)
T ss_dssp CCEEEEEECC
T ss_pred CCCCEEEECC
Confidence 5566776665
No 492
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=23.93 E-value=3e+02 Score=23.48 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=24.2
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008761 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (554)
Q Consensus 78 ~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~~d~e~~~eAL~aGA~DyL 135 (554)
..|+|++-..-.. .-+.++..++... +..+||+....... ......+|++..+
T Consensus 71 ~ad~vi~~~~~d~-~n~~~~~~a~~~~--~~~~ii~~~~~~~~--~~~l~~~G~~~vi 123 (153)
T 1id1_A 71 RCRAILALSDNDA-DNAFVVLSAKDMS--SDVKTVLAVSDSKN--LNKIKMVHPDIIL 123 (153)
T ss_dssp TCSEEEECSSCHH-HHHHHHHHHHHHT--SSSCEEEECSSGGG--HHHHHTTCCSEEE
T ss_pred hCCEEEEecCChH-HHHHHHHHHHHHC--CCCEEEEEECCHHH--HHHHHHcCCCEEE
Confidence 4677776543211 1222333333332 44566655443332 2233567877554
No 493
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=23.82 E-value=2.3e+02 Score=26.24 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-----CHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-----SPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~-----dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
..-+|||..-..-+-..+...|.+.|+.|+... ...+.++.+... ..++.++...+-+.+.+ ++++.+.+..
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 89 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL--GFDFYASEGNVGDWDSTKQAFDKVKAEV 89 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeeEEEecCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999887532 345555666554 33444444444454443 4566666542
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 90 --g~id~lv~~A 99 (256)
T 3ezl_A 90 --GEIDVLVNNA 99 (256)
T ss_dssp --CCEEEEEECC
T ss_pred --CCCCEEEECC
Confidence 4566776654
No 494
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=23.75 E-value=2.4e+02 Score=26.86 Aligned_cols=62 Identities=16% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHhhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEE
Q 008761 47 AVFSLLVKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (554)
Q Consensus 47 ~L~~lL~~~g~eV~~---A----~dg~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVL 114 (554)
.+.+.|++.|.++.. . .+...++..+... .||+|++-.. +.+...+++.+++.. ..+|+|..
T Consensus 157 ~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~--~~d~i~~~~~--~~~a~~~~~~~~~~g--~~~~~~~~ 225 (346)
T 1usg_A 157 SVQDGLKAANANVVFFDGITAGEKDFSALIARLKKE--NIDFVYYGGY--YPEMGQMLRQARSVG--LKTQFMGP 225 (346)
T ss_dssp HHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHT--TCCEEEEESC--HHHHHHHHHHHHHTT--CCCEEEEC
T ss_pred HHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhc--CCCEEEEcCc--chHHHHHHHHHHHcC--CCCeEEec
Confidence 355566666765431 1 2445566666654 6888887531 234566777777654 34565433
No 495
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=23.74 E-value=74 Score=31.54 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=31.3
Q ss_pred HHHHHHHHHhccCCCCceEE--EEecCCCHHHHHHHHHcCCCEEEeC
Q 008761 93 GLKMLKYITRDKELQRIPVI--MMSAQDEVSVVVKCLRLGAADYLVK 137 (554)
Q Consensus 93 GlElLr~Ir~~~~~~~iPII--VLSs~~d~e~~~eAL~aGA~DyL~K 137 (554)
++++++++... ..+||| ...+-.+.+.+.+++.+||+.++.=
T Consensus 195 ~~~~i~~i~~~---~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vG 238 (305)
T 2nv1_A 195 PYELLLQIKKD---GKLPVVNFAAGGVATPADAALMMQLGADGVFVG 238 (305)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEEC
T ss_pred cHHHHHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEc
Confidence 46788888764 467888 4445557888999999999988654
No 496
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=23.69 E-value=3.2e+02 Score=25.89 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhccCCCC
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQR 108 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~dg~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~~~~~ 108 (554)
....|||..-..-+-..+...|.+.|+.|+.+ .+...+-+..... .....+.+|+ -+.+.+ ++++.+.+.. ..
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~Dv--~d~~~v~~~~~~~~~~~--g~ 82 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-PGAVFILCDV--TQEDDVKTLVSETIRRF--GR 82 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-TTEEEEECCT--TSHHHHHHHHHHHHHHH--SC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-cCCeEEEcCC--CCHHHHHHHHHHHHHHc--CC
Confidence 34579999999999999999999999998754 4544333333222 1233344444 444444 3455554432 45
Q ss_pred ceEEEEec
Q 008761 109 IPVIMMSA 116 (554)
Q Consensus 109 iPIIVLSs 116 (554)
+-+||-.+
T Consensus 83 iD~lv~nA 90 (270)
T 1yde_A 83 LDCVVNNA 90 (270)
T ss_dssp CCEEEECC
T ss_pred CCEEEECC
Confidence 66666554
No 497
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=23.68 E-value=2e+02 Score=27.89 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=45.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCc--H---HHHHHHH
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKC-----SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK--G---LKMLKYI 100 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~-----g~eV~-~A~dg~EALe~L~~~~~~PDLILLDi~MP~mD--G---lElLr~I 100 (554)
..+|..||-++.+.+..++.+... .-.|. ...|+.+.+... ...+|+|++|...|... . .++++.+
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~ 178 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDVIIVDSSDPIGPAETLFNQNFYEKI 178 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEEEEEECCCTTTGGGGGSSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---CCCceEEEEcCCCCCCcchhhhHHHHHHHH
Confidence 368999999999998888877532 11232 556777665433 23799999998655322 2 3666666
Q ss_pred Hhc
Q 008761 101 TRD 103 (554)
Q Consensus 101 r~~ 103 (554)
++.
T Consensus 179 ~~~ 181 (283)
T 2i7c_A 179 YNA 181 (283)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 498
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=23.63 E-value=2.3e+02 Score=28.88 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=21.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008761 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR 63 (554)
Q Consensus 32 kirVLIVDDd~~~r~~L~~lL~~~g~eV~~A~ 63 (554)
+.+|||+......+ .+...+.+.|++|..+.
T Consensus 19 ~~~ili~g~g~~g~-~~~~a~~~~G~~v~~v~ 49 (433)
T 2dwc_A 19 AQKILLLGSGELGK-EIAIEAQRLGVEVVAVD 49 (433)
T ss_dssp CCEEEEESCSHHHH-HHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCHHHH-HHHHHHHHCCCEEEEEE
Confidence 46899998876444 45556667899877544
No 499
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=23.62 E-value=2.8e+02 Score=26.06 Aligned_cols=82 Identities=9% Similarity=0.067 Sum_probs=50.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CC----HHHHHHHHHhcCCCceEEEEecCCCCCcHH-HHHHHHHhcc
Q 008761 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RS----PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (554)
Q Consensus 31 skirVLIVDDd~~~r~~L~~lL~~~g~eV~~A-~d----g~EALe~L~~~~~~PDLILLDi~MP~mDGl-ElLr~Ir~~~ 104 (554)
..-.|||..-..-+-..+...|.+.|+.|+.+ .. ..++.+.+... ...+.++-+++-+.+.+ ++++.+.+..
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL--GRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT--TSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999999998855 32 23344444443 23344444444444443 3556665432
Q ss_pred CCCCceEEEEec
Q 008761 105 ELQRIPVIMMSA 116 (554)
Q Consensus 105 ~~~~iPIIVLSs 116 (554)
..+-+|+..+
T Consensus 85 --g~id~lv~nA 94 (259)
T 3edm_A 85 --GEIHGLVHVA 94 (259)
T ss_dssp --CSEEEEEECC
T ss_pred --CCCCEEEECC
Confidence 4566666544
No 500
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=23.61 E-value=1.5e+02 Score=28.76 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCcHHHHHHHHHhccCCCCceEEEEecC-CCHHHHHHHHHcCCCEEEe
Q 008761 66 RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLV 136 (554)
Q Consensus 66 ~EALe~L~~~~~~PDLILLDi~MP~mDGlElLr~Ir~~~~~~~iPIIVLSs~-~d~e~~~eAL~aGA~DyL~ 136 (554)
.++++.+.+. ..|+|.+.+ --+++--.+++.+++... ..+|||+++.. ... ..|++.+|.
T Consensus 23 ~~~~~~l~~~--GaD~IelG~-S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADS--GTDAVMISG-TQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTT--TCSEEEECC-CTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHc--CCCEEEECC-CCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
Done!