BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008762
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum
pdb|3VNZ|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum In Complex With D-Glucuronic
Acid
pdb|3VO0|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum Covalent-Bonded With
2-Deoxy-2-Fluoro-D-Glucuronic Acid
Length = 488
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 40/265 (15%)
Query: 153 DELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNY 212
+ L+ F K+G K+++GLN G+ + A D +++ T+ +
Sbjct: 122 NNLSEFLDKTGW-------KLIYGLNL-------GKGTPENAADEA---AYVMETIGAD- 163
Query: 213 SIHGWELGNE---LCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFD 269
+ ++LGNE NG+ R A+ +A + I V + P P ++
Sbjct: 164 RLLAFQLGNEPDLFYRNGI--RPASYDFAAYAGDWQRFFTAIRKRVPNAPFA-GPDTAYN 220
Query: 270 AKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHL-VEKILDP-LYLDREVDTFSQLENTLK 327
KW F DK + + H Y GP D + +E+++ P L E Q+E
Sbjct: 221 TKWLVPFADKFKHDVKFISSHYYAEGPPTDPSMTIERLMKPNPRLLGETAGLKQVE---- 276
Query: 328 SSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYG 387
+ T + E+ Y G V++ F + W D + AA + + GG YG
Sbjct: 277 -ADTGLPFRLTETNSCYQGGKQGVSDTFAAALWAGDLMYQQAAAGSTGI---NFHGGGYG 332
Query: 388 LLNTTT------FVPNPDYYSALLW 406
F+ P+YY LL+
Sbjct: 333 WYTPVAGTPEDGFIARPEYYGMLLF 357
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 432 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 468
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 149 SRESRWLPSLLSNIENKTVINAALGFDSYLVXRHGNR 185
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 432 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 468
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 441 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 477
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 432 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 468
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 441 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 477
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 432 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 468
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 442 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 478
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 432 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 468
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 442 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 478
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 432 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 468
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 153 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 189
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 432 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 468
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 149 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 185
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 192 KGAWDYTNAESFISYTVKKNYSIHGWEL 219
+G +++TNA++F+ + + N ++HG L
Sbjct: 223 EGNFNFTNADAFVDWATENNMTVHGHAL 250
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 192 KGAWDYTNAESFISYTVKKNYSIHGWEL 219
+G +++TNA++F+ + + N ++HG L
Sbjct: 223 EGNFNFTNADAFVDWATENNMTVHGHAL 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,886,665
Number of Sequences: 62578
Number of extensions: 640889
Number of successful extensions: 1334
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1324
Number of HSP's gapped (non-prelim): 15
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)