Query 008762
Match_columns 554
No_of_seqs 185 out of 490
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 16:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03662 Glyco_hydro_79n: Glyc 100.0 3.1E-77 6.7E-82 604.8 -0.2 317 43-366 2-319 (319)
2 COG3534 AbfA Alpha-L-arabinofu 100.0 9.3E-44 2E-48 363.8 28.4 437 43-546 3-499 (501)
3 PF01229 Glyco_hydro_39: Glyco 99.4 3E-11 6.5E-16 132.5 22.4 312 94-446 43-391 (486)
4 smart00813 Alpha-L-AF_C Alpha- 99.0 4.1E-09 8.9E-14 101.4 12.3 115 394-539 64-189 (189)
5 PF11790 Glyco_hydro_cc: Glyco 98.7 2.7E-07 5.8E-12 92.1 12.8 106 211-344 63-177 (239)
6 PF06964 Alpha-L-AF_C: Alpha-L 98.6 1.4E-07 3E-12 89.8 9.3 109 393-539 68-177 (177)
7 PF02055 Glyco_hydro_30: O-Gly 98.4 2.7E-05 5.8E-10 85.4 20.8 234 200-459 207-473 (496)
8 PF00150 Cellulase: Cellulase 98.3 3.9E-05 8.3E-10 77.5 17.1 218 92-347 22-251 (281)
9 COG5520 O-Glycosyl hydrolase [ 98.1 0.00026 5.6E-09 72.4 18.1 213 202-449 157-375 (433)
10 PF12891 Glyco_hydro_44: Glyco 98.0 2.1E-05 4.5E-10 77.3 9.1 94 197-294 103-237 (239)
11 PF07745 Glyco_hydro_53: Glyco 97.9 0.00018 3.9E-09 74.8 13.9 201 90-345 23-242 (332)
12 PF12876 Cellulase-like: Sugar 97.6 0.00013 2.8E-09 61.2 6.4 73 212-292 9-88 (88)
13 smart00633 Glyco_10 Glycosyl h 97.0 0.061 1.3E-06 54.1 18.6 210 146-402 12-253 (254)
14 COG3867 Arabinogalactan endo-1 96.8 0.17 3.6E-06 51.2 19.2 213 89-344 61-287 (403)
15 COG3664 XynB Beta-xylosidase [ 95.7 0.11 2.4E-06 54.8 11.7 181 214-416 105-300 (428)
16 PRK10150 beta-D-glucuronidase; 94.5 1.6 3.5E-05 49.5 17.7 66 214-294 409-474 (604)
17 PF14587 Glyco_hydr_30_2: O-Gl 94.4 0.4 8.6E-06 50.7 11.5 127 200-344 157-312 (384)
18 PF02836 Glyco_hydro_2_C: Glyc 93.8 2.3 4.9E-05 43.7 15.7 82 153-254 62-151 (298)
19 PF00332 Glyco_hydro_17: Glyco 88.1 5.7 0.00012 41.3 11.7 196 92-347 14-242 (310)
20 PF03198 Glyco_hydro_72: Gluca 86.6 15 0.00032 38.0 13.3 127 153-295 82-217 (314)
21 COG5309 Exo-beta-1,3-glucanase 84.2 25 0.00054 35.6 13.1 77 154-251 91-168 (305)
22 PF00331 Glyco_hydro_10: Glyco 81.2 73 0.0016 33.1 16.5 73 331-404 232-317 (320)
23 KOG2566 Beta-glucocerebrosidas 66.1 1.9E+02 0.0041 31.0 16.2 61 394-456 432-494 (518)
24 PF02449 Glyco_hydro_42: Beta- 62.5 67 0.0014 34.1 10.9 54 97-179 16-69 (374)
25 PF02806 Alpha-amylase_C: Alph 57.6 34 0.00074 28.3 6.2 15 531-545 79-93 (95)
26 PF14488 DUF4434: Domain of un 49.9 1.9E+02 0.0042 27.0 10.5 94 150-264 65-161 (166)
27 TIGR03356 BGL beta-galactosida 44.3 48 0.001 36.1 6.2 99 97-225 60-164 (427)
28 PF02449 Glyco_hydro_42: Beta- 41.4 64 0.0014 34.2 6.6 75 325-404 281-365 (374)
29 PRK10340 ebgA cryptic beta-D-g 33.6 1.6E+02 0.0035 35.8 9.0 29 214-254 441-469 (1021)
30 PRK09525 lacZ beta-D-galactosi 32.4 2.6E+02 0.0057 34.1 10.4 29 214-254 454-482 (1027)
31 KOG4701 Chitinase [Cell wall/m 30.3 7.1E+02 0.015 26.7 13.8 42 151-207 91-132 (568)
32 TIGR01212 radical SAM protein, 28.5 4.8E+02 0.01 26.8 10.4 124 146-297 90-220 (302)
33 PF10566 Glyco_hydro_97: Glyco 27.2 1.5E+02 0.0032 30.3 6.1 128 146-290 28-156 (273)
34 PRK10984 DNA-binding transcrip 25.6 68 0.0015 28.7 2.9 31 91-122 7-37 (127)
35 PF07417 Crl: Transcriptional 23.6 61 0.0013 28.8 2.2 31 91-122 5-35 (125)
36 PF02057 Glyco_hydro_59: Glyco 23.3 1.2E+03 0.026 27.0 19.7 182 208-442 168-368 (669)
37 PRK15014 6-phospho-beta-glucos 20.5 2.1E+02 0.0046 31.6 6.3 99 97-224 75-180 (477)
38 TIGR03006 pepcterm_polyde poly 20.4 8.9E+02 0.019 24.4 11.9 102 152-283 30-134 (265)
No 1
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=100.00 E-value=3.1e-77 Score=604.79 Aligned_cols=317 Identities=55% Similarity=1.053 Sum_probs=155.0
Q ss_pred eeEEEecCCCcccccCCceeEEEeccCCCCCCCCCCcccccccccccCCCcHHHHHHHHHcCCCeEecCCcccceEeeec
Q 008762 43 GGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDT 122 (554)
Q Consensus 43 ~~~v~I~~~~~~~~i~~~f~g~sie~wp~~~~~y~~~~~~~~sl~~~~l~~~~L~~l~k~L~p~~LRiGG~~~D~~~~~~ 122 (554)
.++|.|+...+++++|++|+|+++||||++||+||+|+||++||+|+||+++.|++++|+|+|.+||+||+.||+++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~ 81 (319)
T PF03662_consen 2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT 81 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCChHHHHH
Q 008762 123 EDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAES 202 (554)
Q Consensus 123 ~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~ 202 (554)
+...++|.|+.++++..|||+++|+++.+||++++|++++| +++|||||++.|+....++.+.|+|+++||++
T Consensus 82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG-------~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~ 154 (319)
T PF03662_consen 82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTG-------LKLIFGLNALLGRRQLADRDWDGSWNSSNAQS 154 (319)
T ss_dssp ------------------------------HHHHHHHHHHT--------EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTT
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHHhC-------CEEEEEecccCCCCCCCCCCcCCCCChHHHHH
Confidence 98888999988888999999999999999999999999999 99999999999864333334568999999999
Q ss_pred HHHHHHhcCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHhcCC
Q 008762 203 FISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQ 282 (554)
Q Consensus 203 ~l~y~~~~g~~l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~~~~ 282 (554)
+++|+.+++|+|++|||||||++++.+.+++++||++|+.+||++|+++|++...+|+++||+++++.+|+++||++.++
T Consensus 155 Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~ 234 (319)
T PF03662_consen 155 LLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGP 234 (319)
T ss_dssp EEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTT
T ss_pred HHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCC
Confidence 99999999999999999999999878889999999999999999999998876788999999998899999999999998
Q ss_pred C-CCeEEEEeecCCCCCChhhhhhhcChhhhHHHHHHHHHHHHHHHhcCCCCcEEEeccccccCCCCCCchhHHHHHHHH
Q 008762 283 S-LDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWY 361 (554)
Q Consensus 283 ~-id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vSdtf~aalw~ 361 (554)
. ||++|||+|++++|.|+.++++|++|.+|+++..+++.+++++++++|++++|+|||+++|++|+++|||||+++|||
T Consensus 235 ~~vD~vT~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~Fww 314 (319)
T PF03662_consen 235 GVVDAVTWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWW 314 (319)
T ss_dssp T--SEEEEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHH
T ss_pred CccCEEEEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHH
Confidence 5 999999999998888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 008762 362 LDQLG 366 (554)
Q Consensus 362 lD~Lg 366 (554)
||+||
T Consensus 315 LDqLG 319 (319)
T PF03662_consen 315 LDQLG 319 (319)
T ss_dssp HHHH-
T ss_pred HHhhC
Confidence 99997
No 2
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.3e-44 Score=363.82 Aligned_cols=437 Identities=14% Similarity=0.184 Sum_probs=311.3
Q ss_pred eeEEEecCCCcccccCCceeEEEeccCCCCCCCCCCcccccccccccCCCcHHHHHHHHHcCCCeEec-CCcccceEeee
Q 008762 43 GGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRL-GGTLQDKVIYD 121 (554)
Q Consensus 43 ~~~v~I~~~~~~~~i~~~f~g~sie~wp~~~~~y~~~~~~~~sl~~~~l~~~~L~~l~k~L~p~~LRi-GG~~~D~~~~~ 121 (554)
..+++|+++..++.||++++|+++|+ .++|+|++++.+++.+++.+..+..++.++|.|.+|+||+ |||+.|.|+|.
T Consensus 3 ~a~~~v~~d~~ig~I~k~iYG~F~EH--lGr~vY~Giyepd~p~~d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~We 80 (501)
T COG3534 3 KARAVVDTDYTIGKIDKRIYGHFIEH--LGRAVYEGIYEPDSPIADERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWE 80 (501)
T ss_pred ccceeechhhccCcchhhhhhHHHHh--hccceeeeeecCCCCCcchhhhHHHHHHHHHhcCCceeecCCcccccccccc
Confidence 46789999999999999999999997 7899999999998889888866777899999999999995 99999999999
Q ss_pred cCCCCCccCcccc------CCCCcccccccccCchhHHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCC
Q 008762 122 TEDNRQPCKQFVK------NSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAW 195 (554)
Q Consensus 122 ~~~~~~~~~p~~~------~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W 195 (554)
++++|...+|.+. .+++.||+ +||++||++.| +++++.+|+|++
T Consensus 81 DGIGP~e~Rp~rldlaW~t~EtN~~Gt----------~EF~~~~e~iG-------aep~~avN~Gsr------------- 130 (501)
T COG3534 81 DGIGPREERPRRLDLAWGTTETNEFGT----------HEFMDWCELIG-------AEPYIAVNLGSR------------- 130 (501)
T ss_pred cCcCchhhCchhhcccccccccccccH----------HHHHHHHHHhC-------CceEEEEecCCc-------------
Confidence 9999988888664 47888988 99999999999 999999999986
Q ss_pred ChHHHHHHHHHHH----------------hcCCcceeeeeeccCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCC
Q 008762 196 DYTNAESFISYTV----------------KKNYSIHGWELGNELCG-NGVGTRVAAAQYATDTISLRNVVQKIYTGVDSK 258 (554)
Q Consensus 196 ~~~~A~~~l~y~~----------------~~g~~l~~wElGNEp~~-~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~ 258 (554)
..++|++|+|||+ ++++++++|+||||.|| |++|. .++.+|++-..+++++++=+.|.+ +
T Consensus 131 gvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~-~~a~EY~~~A~e~~k~~k~~d~t~--e 207 (501)
T COG3534 131 GVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGH-KTAPEYGRLANEYRKYMKYFDPTI--E 207 (501)
T ss_pred cHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCccccc-ccCHHHHHHHHHHHHHHhhcCccc--c
Confidence 4899999999983 37899999999999999 77875 467788888888888888777764 4
Q ss_pred ceEEccCC---CCChHHHHHHHHhcCCCCCeEEEEeecCCCCCC-hhhhhhhcC-hhhhHHHHHHHHHHHHHHHhcCCC-
Q 008762 259 PLIIAPGG---FFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVD-QHLVEKILD-PLYLDREVDTFSQLENTLKSSATS- 332 (554)
Q Consensus 259 ~~~vgP~~---~~~~~w~~~fl~~~~~~id~vs~H~Y~~~~g~~-~~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~- 332 (554)
..++|.++ ..++.|.+.+|+++.+.+|++|+|+|..+...+ +.....-+. ..+++.++..... +.+++.+.
T Consensus 208 ~~v~g~a~~~n~~~~~W~~~vl~~~~e~vD~ISlH~Y~Gn~~~~t~ny~~~~~~~~~~i~~l~~~~d~---Vk~k~r~kk 284 (501)
T COG3534 208 NVVCGSANGANPTDPNWEAVVLEEAYERVDYISLHYYKGNATDDTPNYWAKSLKLDRYIDDLIKKIDY---VKAKKRSKK 284 (501)
T ss_pred ceEEeecCCCCCCchHHHHHHHHHHhhhcCeEEEEEecCccccCcHHHHHHHhhhhHHHHHHHHHHHH---HHhcccccc
Confidence 45666543 257899999999999899999999996542211 111111111 1122222222222 22344333
Q ss_pred -CcEEEeccccccCCCC-----------CCc---hhHHHHHHHHHHHHHHHhhcCceeeeee--cccCcccc-cccC-CC
Q 008762 333 -AVAWVGESGGAYNSGH-----------NLV---TNAFVFSFWYLDQLGMAAAHDTKTYCRQ--SLIGGNYG-LLNT-TT 393 (554)
Q Consensus 333 -~p~wl~Etns~~~~G~-----------~~v---Sdtf~aalw~lD~Lg~aA~~g~~v~~~q--~ligg~Y~-l~~~-~~ 393 (554)
..+-++|||.+|..-. ++. -.+|-.||...=.|....++.-.|.+.+ .++.---. +... +.
T Consensus 285 ~v~l~fDEWnvWy~~~~~d~~~~~w~~~p~~Le~~ytl~Dal~~g~~l~~f~k~sdrV~iAniAQlVNvi~ai~~ekgg~ 364 (501)
T COG3534 285 RVGLSFDEWNVWYHVRKEDLDRIPWGTAPGLLEQIYTLEDALFAGSLLNIFHKHSDRVRIANIAQLVNVLAAIMTEKGGP 364 (501)
T ss_pred ceeEEEecccceeecchhhhccccCCCCCccccccchHHHHHHHHHHHHHHHhhcceeehhHHHHHHHHhhheeecCCCc
Confidence 4467899999986511 111 1133333333333444444443332211 11100000 1111 23
Q ss_pred CCcCcchHHHHHHHHHcCCCeeeeeecCCc----------eeEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEEecCcccc
Q 008762 394 FVPNPDYYSALLWHRLMGRNALSTSFSGTK----------KIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTS 463 (554)
Q Consensus 394 ~~p~P~Yy~~lL~~~~~G~~vl~~~~~~~~----------~v~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~l~~~~~~ 463 (554)
...+|.||++.+++.+.+...|++.++++. ++.+.|++....|.|++.++|++.+++..++|.+.|+
T Consensus 365 ~~~~~~y~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~~l~i~vvN~~~~d~~~~~i~l~G~--- 441 (501)
T COG3534 365 AWLTPIYYPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGGELTIFVVNRALEDALKLNISLNGL--- 441 (501)
T ss_pred ceeeehhhhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCCeEEEEEEeccccccccceEEeccc---
Confidence 556899999999999988888888775432 4666666665458999999999999988999999986
Q ss_pred cccccchhhhhhcccCCCCCCceeEEEEEecCCCCccccceeecCeeeecCCCCCCCCCCccccCC-CCceEEcCceEEE
Q 008762 464 RHKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKS-TQPVSVGPFSIVF 542 (554)
Q Consensus 464 ~~~~~~~~~~~~~l~~~~~~~~~~~~y~Lt~~~~~l~s~~v~lNG~~l~~~~~g~~p~l~~~~~~~-~~~~~lPp~S~~f 542 (554)
.+.+.++.++||++ ++.+++.+--...+. +-.-++..++. ..++.+||+|+.+
T Consensus 442 ------------------~~a~~~~~~~lt~~--~~~a~Nt~d~p~~V~------p~~~~~~~vs~~~l~~~~~~~S~~v 495 (501)
T COG3534 442 ------------------KKAKSAEHQVLTGD--DLNATNTFDAPENVV------PVPGKGATVSKNELTLDLPPLSVSV 495 (501)
T ss_pred ------------------cccceeeEEEEecC--ccccccCCCCCCcee------cccCCCccccCCceeEecCCceEEE
Confidence 12468899999988 777777662111111 11122223333 4678999999999
Q ss_pred EEec
Q 008762 543 VHMP 546 (554)
Q Consensus 543 ~vl~ 546 (554)
+.|.
T Consensus 496 irl~ 499 (501)
T COG3534 496 IRLK 499 (501)
T ss_pred EEEe
Confidence 9984
No 3
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.39 E-value=3e-11 Score=132.47 Aligned_cols=312 Identities=15% Similarity=0.192 Sum_probs=158.0
Q ss_pred HHHHHHHHHcCCCeEecCCcccceEe-eecCCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCccccccE
Q 008762 94 NILLNAVKAFSPLKIRLGGTLQDKVI-YDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAK 172 (554)
Q Consensus 94 ~~L~~l~k~L~p~~LRiGG~~~D~~~-~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~~ 172 (554)
..|..+.+.+|--+||+=|-+.|.+. +.... ++.. ..+.-...|++++|..+.| .+
T Consensus 43 ~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~-----------~~~~-----~~Ynf~~lD~i~D~l~~~g-------~~ 99 (486)
T PF01229_consen 43 EQLRELQEELGFRYVRFHGLFSDDMMVYSESD-----------EDGI-----PPYNFTYLDQILDFLLENG-------LK 99 (486)
T ss_dssp HHHHHHHCCS--SEEEES-TTSTTTT-EEEEE-----------TTEE-----EEE--HHHHHHHHHHHHCT--------E
T ss_pred HHHHHHHhccCceEEEEEeeccCchhhccccc-----------cCCC-----CcCChHHHHHHHHHHHHcC-------CE
Confidence 34566667788899999887766433 21100 0100 0134467799999999999 99
Q ss_pred EEEEeecCCCCcccCCCCC-CCCCC-----hHHH-------HHHHHHHH-hcCC---cceeeeeeccCCCCCCCCCCCHH
Q 008762 173 IVFGLNALTGRSIQNDGSV-KGAWD-----YTNA-------ESFISYTV-KKNY---SIHGWELGNELCGNGVGTRVAAA 235 (554)
Q Consensus 173 ~i~glN~~~~~~~~~~~~~-~g~W~-----~~~A-------~~~l~y~~-~~g~---~l~~wElGNEp~~~~~~~~~t~~ 235 (554)
+++-|.+.-.. .+.+.. .-.|. +..- .++++... ..|. .-.+|||.||||+......-+.+
T Consensus 100 P~vel~f~p~~--~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ 177 (486)
T PF01229_consen 100 PFVELGFMPMA--LASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPE 177 (486)
T ss_dssp EEEEE-SB-GG--GBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HH
T ss_pred EEEEEEechhh--hcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHH
Confidence 98888653221 000000 00111 2222 23333322 1221 23378999999985433334678
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCceEEccCCC-CChHHHHHHHHh---cCCCCCeEEEEeecCCCCCChhhhhhhcCh-h
Q 008762 236 QYATDTISLRNVVQKIYTGVDSKPLIIAPGGF-FDAKWFKEFLDK---SGQSLDVATHHIYNLGPGVDQHLVEKILDP-L 310 (554)
Q Consensus 236 ~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~-~~~~w~~~fl~~---~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~-~ 310 (554)
+|.+-|+..+++||++.|+ .++.||+.. ....|..+|++- .+..+|++|+|.|+.+.+.+. ....... .
T Consensus 178 ey~~ly~~~~~~iK~~~p~----~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~--~~~~~~~~~ 251 (486)
T PF01229_consen 178 EYFELYDATARAIKAVDPE----LKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDI--NENMYERIE 251 (486)
T ss_dssp HHHHHHHHHHHHHHHH-TT----SEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE---SS-EEEEB-
T ss_pred HHHHHHHHHHHHHHHhCCC----CcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccc--chhHHhhhh
Confidence 8999999999999999876 488999432 234788877653 334599999999986422110 0111100 1
Q ss_pred hhHHHHHHHHHHHHHHH-hcCCCCcEEEeccccccCCCCCCchhHHHHHHHHHHHHHHHhhcCceeee------------
Q 008762 311 YLDREVDTFSQLENTLK-SSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYC------------ 377 (554)
Q Consensus 311 ~l~~~~~~~~~~~~~~~-~~~~~~p~wl~Etns~~~~G~~~vSdtf~aalw~lD~Lg~aA~~g~~v~~------------ 377 (554)
..+.+..++..++++++ +..|..|+.++|+|+... ....+.|+...|-..+..+.-.....++.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~-~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee~~ 330 (486)
T PF01229_consen 252 DSRRLFPELKETRPIINDEADPNLPLYITEWNASIS-PRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEENG 330 (486)
T ss_dssp -HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SS-TT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---TTS
T ss_pred hHHHHHHHHHHHHHHHhhccCCCCceeecccccccC-CCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhccC
Confidence 12233345556655554 456789999999998763 3344556544333334432222111122211
Q ss_pred -eecccCcccccccCCCCCcCcchHHHHHHHHHcCCCeeeeeecCCceeEEEEEEEeCCCcEEEEEEeCC
Q 008762 378 -RQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLD 446 (554)
Q Consensus 378 -~q~ligg~Y~l~~~~~~~p~P~Yy~~lL~~~~~G~~vl~~~~~~~~~v~~YA~~~~~~g~v~l~lIN~~ 446 (554)
....+.|.+||+... -.+.|.||++.|.+++ |..++... ...+. ..++++.+.|++-|..
T Consensus 331 ~~~~pf~ggfGLlt~~-gI~KPa~~A~~~L~~l-g~~~~~~~---~~~~v----t~~~~~~~~il~~n~~ 391 (486)
T PF01229_consen 331 TPRKPFHGGFGLLTKL-GIPKPAYYAFQLLNKL-GDRLVAKG---DHYIV----TSKDDGSVQILVWNHN 391 (486)
T ss_dssp S-SSSSSS-S-SEECC-CEE-HHHHHHHHHTT---SEEEEEE---TTEEE----EE-TTS-EEEEEEE--
T ss_pred CCCCceecchhhhhcc-CCCchHHHHHHHHHhh-CceeEecC---CCcee----EEcCCCeEEEEEecCc
Confidence 111233567888776 5689999999999987 77554322 22222 3334678999888854
No 4
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=98.99 E-value=4.1e-09 Score=101.37 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=81.6
Q ss_pred CCcCcchHHHHHHHHHcCCCeeeeeecCC---------ceeEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEEecCccccc
Q 008762 394 FVPNPDYYSALLWHRLMGRNALSTSFSGT---------KKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSR 464 (554)
Q Consensus 394 ~~p~P~Yy~~lL~~~~~G~~vl~~~~~~~---------~~v~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~l~~~~~~~ 464 (554)
...+|.||++.||++++|.+++++.+.++ +.+.+.|.+..+.+.++|.++|.+.++++.++|++.|+
T Consensus 64 ~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~~~~~v~vvN~~~~~~~~~~l~l~g~---- 139 (189)
T smart00813 64 AWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGGSLTVKVVNRSPEEAVTVTISLRGL---- 139 (189)
T ss_pred EEECCcCHHHHHhhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCCCEEEEEEEeCCCCcCEEEEEEecCC----
Confidence 56789999999999999999999887533 34666666543335799999999988778899998885
Q ss_pred ccccchhhhhhcccCCCCCCceeEEEEEecCCCCccccceeecCeeeecCCCCCCCCCCc-cccC-CCCceEEcCce
Q 008762 465 HKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEP-LRVK-STQPVSVGPFS 539 (554)
Q Consensus 465 ~~~~~~~~~~~~l~~~~~~~~~~~~y~Lt~~~~~l~s~~v~lNG~~l~~~~~g~~p~l~~-~~~~-~~~~~~lPp~S 539 (554)
..+....++|+++ ++.+.+.+-+...+. |.-.. .... ....++|||+|
T Consensus 140 ------------------~~~~~~~~~l~~~--~~~a~Nt~~~p~~V~-------p~~~~~~~~~~~~~~~~lp~~S 189 (189)
T smart00813 140 ------------------KAKSAEGTVLTSP--DLNAANTFEDPNKVV-------PVTSTLAAVEGGTLTVTLPPHS 189 (189)
T ss_pred ------------------ccceEEEEEEeCC--CCccccCCCCCCeee-------ccccCCceeeCCEEEEEeCCCC
Confidence 1235688899987 777878776654443 22111 1122 22568999987
No 5
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.65 E-value=2.7e-07 Score=92.06 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=75.8
Q ss_pred CCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCC-------ChHHHHHHHHhcC--
Q 008762 211 NYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFF-------DAKWFKEFLDKSG-- 281 (554)
Q Consensus 211 g~~l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~-------~~~w~~~fl~~~~-- 281 (554)
+...+++..-||||... ..+++++++++.|+++.+.++. + +.++++|+... ...|+++|++...
T Consensus 63 ~~~~~~ll~fNEPD~~~-qsn~~p~~aa~~w~~~~~~~~~--~----~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~~ 135 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG-QSNMSPEEAAALWKQYMNPLRS--P----GVKLGSPAVAFTNGGTPGGLDWLSQFLSACARG 135 (239)
T ss_pred ccCccceeeecCCCCCC-CCCCCHHHHHHHHHHHHhHhhc--C----CcEEECCeecccCCCCCCccHHHHHHHHhcccC
Confidence 55677899999999843 5689999999999998888773 2 46899998631 2479999999875
Q ss_pred CCCCeEEEEeecCCCCCChhhhhhhcChhhhHHHHHHHHHHHHHHHhcCCCCcEEEecccccc
Q 008762 282 QSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAY 344 (554)
Q Consensus 282 ~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~ 344 (554)
-.+|++++|.|. + +. . .+... +..+.++++ +||||||.+...
T Consensus 136 ~~~D~iavH~Y~---~-~~---~---------~~~~~---i~~~~~~~~--kPIWITEf~~~~ 177 (239)
T PF11790_consen 136 CRVDFIAVHWYG---G-DA---D---------DFKDY---IDDLHNRYG--KPIWITEFGCWN 177 (239)
T ss_pred CCccEEEEecCC---c-CH---H---------HHHHH---HHHHHHHhC--CCEEEEeecccC
Confidence 469999999992 1 11 1 11222 233333444 999999998543
No 6
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=98.63 E-value=1.4e-07 Score=89.78 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=74.6
Q ss_pred CCCcCcchHHHHHHHHHcCCCeeeeeecCCceeEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEEecCcccccccccchhh
Q 008762 393 TFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKM 472 (554)
Q Consensus 393 ~~~p~P~Yy~~lL~~~~~G~~vl~~~~~~~~~v~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~l~~~~~~~~~~~~~~~ 472 (554)
....+|.||+..||+++.|..+| +.+.+.|.+..+.+.+.|.+||.+.+ .++++|++.|+.
T Consensus 68 ~~~~tpsY~v~~lf~~~~g~~~l-------~~l~~~As~d~~~~~l~v~vVN~~~~-~~~v~l~l~g~~----------- 128 (177)
T PF06964_consen 68 QVFGTPSYYVQKLFSNHRGDTVL-------PPLDVSASRDEDGGELYVKVVNRSSE-PQTVTLNLQGFS----------- 128 (177)
T ss_dssp EEEESHHHHHHHHHHHCTTSEEE-------ESEEEEEEEETTTTEEEEEEEE-SSS-BEEEEEEETTST-----------
T ss_pred CEEECchHHHHHHHHhcCCCeEe-------ccEEEEEEEECCCCEEEEEEEECCCC-CEEEEEEEcCCC-----------
Confidence 45679999999999999999998 45666676655445799999999887 578999998851
Q ss_pred hhhcccCCCCCCceeEEEEEecCCCCccccceeecCeeeecCCCCCCCCCCcccc-CCCCceEEcCce
Q 008762 473 KIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRV-KSTQPVSVGPFS 539 (554)
Q Consensus 473 ~~~~l~~~~~~~~~~~~y~Lt~~~~~l~s~~v~lNG~~l~~~~~g~~p~l~~~~~-~~~~~~~lPp~S 539 (554)
.....+.+.|+++ ++.+.+.+-|...+. |.-..... .....++|||+|
T Consensus 129 ----------~~~~a~~~~Ltg~--~~~a~Nt~~~p~~V~-------p~~~~~~~~~~~~~~~lp~~S 177 (177)
T PF06964_consen 129 ----------PAATATVTTLTGD--DPDAENTFENPENVV-------PVTSTVSAEGGTFTYTLPPYS 177 (177)
T ss_dssp ----------S-EEEEEEEEETS--STT-B-CSSSTTSSE-------EEEEEEEEETTEEEEEE-SSE
T ss_pred ----------CCceEEEEEEECC--CcccccCCCCCCEEE-------EEEeeEEecCCEEEEEeCCCC
Confidence 2357899999987 567777765554433 22111111 223578999987
No 7
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=98.40 E-value=2.7e-05 Score=85.40 Aligned_cols=234 Identities=16% Similarity=0.190 Sum_probs=127.7
Q ss_pred HHHHHHHH---HhcCCcceeeeeeccCCCC-----CC-CCCCCHHHHHHHHHH-HHHHHHHHccCCCCCceEEccCCC--
Q 008762 200 AESFISYT---VKKNYSIHGWELGNELCGN-----GV-GTRVAAAQYATDTIS-LRNVVQKIYTGVDSKPLIIAPGGF-- 267 (554)
Q Consensus 200 A~~~l~y~---~~~g~~l~~wElGNEp~~~-----~~-~~~~t~~~Ya~d~~~-~~~~l~~~~~~~~~~~~~vgP~~~-- 267 (554)
|..+++|. +++|.+|.+.-+.|||+.. .+ ...|++++-++=.+. |.-.|++.... .+.++++-+..
T Consensus 207 A~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~~ 284 (496)
T PF02055_consen 207 ADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNRD 284 (496)
T ss_dssp HHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEGG
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCCc
Confidence 66666665 3589999999999999851 12 346888876443332 66677764321 23566664432
Q ss_pred CChHHHHHHHHh--cCCCCCeEEEEeecCCCCCChhhhhhhcChhhhHHHHHHHHHHHHHHHhcCCCCcEEEeccccccC
Q 008762 268 FDAKWFKEFLDK--SGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYN 345 (554)
Q Consensus 268 ~~~~w~~~fl~~--~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~ 345 (554)
..++|...+|+. +...||.+.+|.|-. ++. +..|++ +.+.-|++.+|.+|......
T Consensus 285 ~~~~~~~~il~d~~A~~yv~GiA~HwY~g----~~~-------~~~l~~-----------~h~~~P~k~l~~TE~~~g~~ 342 (496)
T PF02055_consen 285 NLPDYADTILNDPEAAKYVDGIAFHWYGG----DPS-------PQALDQ-----------VHNKFPDKFLLFTEACCGSW 342 (496)
T ss_dssp GTTHHHHHHHTSHHHHTTEEEEEEEETTC----S-H-------CHHHHH-----------HHHHSTTSEEEEEEEESS-S
T ss_pred ccchhhhhhhcChhhHhheeEEEEECCCC----Cch-------hhHHHH-----------HHHHCCCcEEEeeccccCCC
Confidence 235788888863 344699999999953 110 111211 12235889999999643221
Q ss_pred CCCCCc-hhHHHHHHHHHHHHHHHhhcCceeeeeecc----cCcc-----cc----cccC--CCCCcCcchHHHHHHHHH
Q 008762 346 SGHNLV-TNAFVFSFWYLDQLGMAAAHDTKTYCRQSL----IGGN-----YG----LLNT--TTFVPNPDYYSALLWHRL 409 (554)
Q Consensus 346 ~G~~~v-Sdtf~aalw~lD~Lg~aA~~g~~v~~~q~l----igg~-----Y~----l~~~--~~~~p~P~Yy~~lL~~~~ 409 (554)
.....+ ...+..+..+..-+...-.++...++...+ .||. +. .++. +.+..+|.||.+-=|+++
T Consensus 343 ~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKF 422 (496)
T PF02055_consen 343 NWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKF 422 (496)
T ss_dssp TTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTT
T ss_pred CcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcc
Confidence 111111 123444555544433334556554433322 1221 10 1222 245678999999999999
Q ss_pred c--CCCeeeeeecCC-ceeEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEEecC
Q 008762 410 M--GRNALSTSFSGT-KKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNG 459 (554)
Q Consensus 410 ~--G~~vl~~~~~~~-~~v~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~l~~ 459 (554)
+ |...+.++.... ..|.+-|.-. .+|+++|+++|...++. .++|.+.+
T Consensus 423 V~PGa~RI~st~~~~~~~l~~vAF~n-PDGs~vvVv~N~~~~~~-~~~v~v~~ 473 (496)
T PF02055_consen 423 VRPGAVRIGSTSSSSDSGLEAVAFLN-PDGSIVVVVLNRGDSDQ-NFSVTVKD 473 (496)
T ss_dssp S-TT-EEEEEEESSSTTTEEEEEEEE-TTSEEEEEEEE-SSS-E-EEEEEEEC
T ss_pred cCCCCEEEEeeccCCCCceeEEEEEC-CCCCEEEEEEcCCCCcc-ceEEEEec
Confidence 9 555555554322 2576666544 47999999999987764 55555544
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.26 E-value=3.9e-05 Score=77.49 Aligned_cols=218 Identities=17% Similarity=0.156 Sum_probs=111.7
Q ss_pred CcHHHHHHHHHcCCCeEecCCcccceEeeecCCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCcccccc
Q 008762 92 NSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRA 171 (554)
Q Consensus 92 ~~~~L~~l~k~L~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~ 171 (554)
..+..+..++++|.-.||+.=. |..-..+. | +.... .-...+++++++.|++.| .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~------~~~~~~~~---~-----~~~~~----~~~~~~ld~~v~~a~~~g-------i 76 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG------WEAYQEPN---P-----GYNYD----ETYLARLDRIVDAAQAYG-------I 76 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE------STSTSTTS---T-----TTSBT----HHHHHHHHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHCCCCEEEeCCC------HHHhcCCC---C-----Ccccc----HHHHHHHHHHHHHHHhCC-------C
Confidence 4455678899999999996322 21111000 0 00000 112356799999999999 9
Q ss_pred EEEEEeecCCCCcccCCCCCCCCCChHHHHHH----HHHH-Hh--cCCcceeeeeeccCCCCCCCC---CCCHHHHHHHH
Q 008762 172 KIVFGLNALTGRSIQNDGSVKGAWDYTNAESF----ISYT-VK--KNYSIHGWELGNELCGNGVGT---RVAAAQYATDT 241 (554)
Q Consensus 172 ~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~----l~y~-~~--~g~~l~~wElGNEp~~~~~~~---~~t~~~Ya~d~ 241 (554)
.+|+.+....+= ...+ ..........++ +++. .. ....+.+|||.|||+....+. ..++.+|.+-+
T Consensus 77 ~vild~h~~~~w-~~~~---~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~ 152 (281)
T PF00150_consen 77 YVILDLHNAPGW-ANGG---DGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWY 152 (281)
T ss_dssp EEEEEEEESTTC-SSST---STTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHH
T ss_pred eEEEEeccCccc-cccc---cccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHH
Confidence 999888774110 0000 011122222222 2221 21 233477999999999742221 22557788888
Q ss_pred HHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHh--cCCCCCeEEEEeecCCCCCChhhhhhhcChhhhHHHHHHH
Q 008762 242 ISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDK--SGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTF 319 (554)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~--~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~ 319 (554)
++..+.||++.|+ .+.+++.... .......+... .....+++++|.|..... ... ...........+...+
T Consensus 153 ~~~~~~Ir~~~~~---~~i~~~~~~~-~~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~--~~~-~~~~~~~~~~~~~~~~ 225 (281)
T PF00150_consen 153 QRAIDAIRAADPN---HLIIVGGGGW-GADPDGAAADNPNDADNNDVYSFHFYDPYDF--SDQ-WNPGNWGDASALESSF 225 (281)
T ss_dssp HHHHHHHHHTTSS---SEEEEEEHHH-HTBHHHHHHHSTTTTTTSEEEEEEEETTTCH--HTT-TSTCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCc---ceeecCCCcc-ccccchhhhcCcccccCceeEEeeEeCCCCc--CCc-cccccchhhhHHHHHH
Confidence 8999999998775 3445544221 00111112221 123578999999984210 000 0000001111222333
Q ss_pred HHHHHHHHhcCCCCcEEEeccccccCCC
Q 008762 320 SQLENTLKSSATSAVAWVGESGGAYNSG 347 (554)
Q Consensus 320 ~~~~~~~~~~~~~~p~wl~Etns~~~~G 347 (554)
+.+...+.+ .++|+|+||++.....+
T Consensus 226 ~~~~~~~~~--~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 226 RAALNWAKK--NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HHHHHHHHH--TTSEEEEEEEESSTTTS
T ss_pred HHHHHHHHH--cCCeEEEeCcCCcCCCC
Confidence 433333333 45899999999875433
No 9
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=0.00026 Score=72.39 Aligned_cols=213 Identities=11% Similarity=0.076 Sum_probs=113.6
Q ss_pred HHHHHHHhcCCcceeeeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCC-ChHHHHHHHH
Q 008762 202 SFISYTVKKNYSIHGWELGNELCGN--GVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFF-DAKWFKEFLD 278 (554)
Q Consensus 202 ~~l~y~~~~g~~l~~wElGNEp~~~--~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~-~~~w~~~fl~ 278 (554)
+.+.|.+..|.++++.-+=||||.- .-+..|+++|-.+=++++..-+.+ +.+++-|+++. .+.|-+..|.
T Consensus 157 ~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~-------~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 157 DFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINA-------EMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred HHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhcc-------ccEEecchhccccccccccccc
Confidence 3444556789999999999999973 125679998876554444443322 45788898763 3456555554
Q ss_pred h--cCCCCCeEEEEeecCCCCCChhhhhhhcChhhhHHHHHHHHHHHHHHHhcCCCCcEEEeccccccCCCCCCchhHHH
Q 008762 279 K--SGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFV 356 (554)
Q Consensus 279 ~--~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vSdtf~ 356 (554)
. +-..+|.+.+|.|... .+ + .|..+ .+....+|.+|++|.-.-. ..++-.|+
T Consensus 230 Dp~a~a~~~ilg~H~Ygg~--v~-----~--~p~~l-------------ak~~~~gKdlwmte~y~~e--sd~~s~dr-- 283 (433)
T COG5520 230 DPKALANMDILGTHLYGGQ--VS-----D--QPYPL-------------AKQKPAGKDLWMTECYPPE--SDPNSADR-- 283 (433)
T ss_pred CHhHhcccceeEeeecccc--cc-----c--chhhH-------------hhCCCcCCceEEeecccCC--CCCCcchH--
Confidence 3 2235999999999532 10 0 01111 1223458999999954321 11222233
Q ss_pred HHHHHHHHHHHHhhcC-ceeeeeecccCcccccccCCCCCcCcchHHHHHHHHHcCCCeeeeeecCCceeEEEEEEEeCC
Q 008762 357 FSFWYLDQLGMAAAHD-TKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQS 435 (554)
Q Consensus 357 aalw~lD~Lg~aA~~g-~~v~~~q~ligg~Y~l~~~~~~~p~P~Yy~~lL~~~~~G~~vl~~~~~~~~~v~~YA~~~~~~ 435 (554)
.++|...++..+...| .+.+.-.-+ -.+|+..-...-.- -+=|..--++.+++..-..++...+.+--+|+..-.+.
T Consensus 284 ~~~~~~~hi~~gm~~gg~~ayv~W~i-~~~~~~~~~~gg~~-k~~y~ma~fskf~q~gy~rldat~sp~~nvyvsayvg~ 361 (433)
T COG5520 284 EALHVALHIHIGMTEGGFQAYVWWNI-RLDYGGGPNHGGNS-KRGYCMAHFSKFVQNGYVRLDATKSPYGNVYVSAYVGP 361 (433)
T ss_pred HHHHHHHHHHhhccccCccEEEEEEE-eeccCCCcCCCccc-ccceeEeeeeeeccCCceEEecccCccceEEEEEEecC
Confidence 5677766665554443 333322211 12333322210000 12233334555566652233322233323333222236
Q ss_pred CcEEEEEEeCCCCC
Q 008762 436 KGLVLLLINLDNST 449 (554)
Q Consensus 436 g~v~l~lIN~~~~~ 449 (554)
+.++++.||+....
T Consensus 362 nkvvivaink~~~~ 375 (433)
T COG5520 362 NKVVIVAINKGTYP 375 (433)
T ss_pred CcEEEEeecccccc
Confidence 78999999997665
No 10
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=98.03 E-value=2.1e-05 Score=77.25 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhc------CCcceeeeeeccCCCC---C---CCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEcc
Q 008762 197 YTNAESFISYTVKK------NYSIHGWELGNELCGN---G---VGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAP 264 (554)
Q Consensus 197 ~~~A~~~l~y~~~~------g~~l~~wElGNEp~~~---~---~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP 264 (554)
+.=..+||+|...+ +..|++|.|.|||++| + +|...+.+++.+.+.+++++||+++|++ +++||
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a----~v~GP 178 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDA----KVFGP 178 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTS----EEEEE
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCC----eEeec
Confidence 34477888887543 5679999999999984 1 3788999999999999999999999874 89999
Q ss_pred CCC---------CC------------hHHHHHHHH-------hcCC-CCCeEEEEeecC
Q 008762 265 GGF---------FD------------AKWFKEFLD-------KSGQ-SLDVATHHIYNL 294 (554)
Q Consensus 265 ~~~---------~~------------~~w~~~fl~-------~~~~-~id~vs~H~Y~~ 294 (554)
... .+ ..|+.=||+ ..|. -+|++.+|+|+.
T Consensus 179 ~~wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvlDiH~YPq 237 (239)
T PF12891_consen 179 VEWGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVLDIHYYPQ 237 (239)
T ss_dssp EE-SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEEEEEE--S
T ss_pred hhhccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeeeeeeecCC
Confidence 632 11 125555554 2353 499999999985
No 11
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.91 E-value=0.00018 Score=74.84 Aligned_cols=201 Identities=17% Similarity=0.193 Sum_probs=110.6
Q ss_pred CCCcHHHHHHHHHcCCCeEecCCcccceEeeecCCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCcccc
Q 008762 90 DLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQF 169 (554)
Q Consensus 90 ~l~~~~L~~l~k~L~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~ 169 (554)
+.....+..++|.-|...||+ + .|.+... .+..+.++-.++.+=+++.|
T Consensus 23 ~G~~~d~~~ilk~~G~N~vRl------R-vwv~P~~------------------~g~~~~~~~~~~akrak~~G------ 71 (332)
T PF07745_consen 23 NGQEKDLFQILKDHGVNAVRL------R-VWVNPYD------------------GGYNDLEDVIALAKRAKAAG------ 71 (332)
T ss_dssp TSSB--HHHHHHHTT--EEEE------E-E-SS-TT------------------TTTTSHHHHHHHHHHHHHTT------
T ss_pred CCCCCCHHHHHHhcCCCeEEE------E-eccCCcc------------------cccCCHHHHHHHHHHHHHCC------
Confidence 344566789999999888775 2 2433110 12334455577788888999
Q ss_pred ccEEEEEeecCC-----CCcccCCCCCCCCCChH----HHHHHHHHH-------HhcCCcceeeeeeccCCC---CCCCC
Q 008762 170 RAKIVFGLNALT-----GRSIQNDGSVKGAWDYT----NAESFISYT-------VKKNYSIHGWELGNELCG---NGVGT 230 (554)
Q Consensus 170 ~~~~i~glN~~~-----~~~~~~~~~~~g~W~~~----~A~~~l~y~-------~~~g~~l~~wElGNEp~~---~~~~~ 230 (554)
.++++.+-+.. +.+..+ .+|... .+.++-+|+ +..|.....+|||||.+. +..+.
T Consensus 72 -m~vlldfHYSD~WaDPg~Q~~P-----~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~ 145 (332)
T PF07745_consen 72 -MKVLLDFHYSDFWADPGKQNKP-----AAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK 145 (332)
T ss_dssp --EEEEEE-SSSS--BTTB-B-------TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC
T ss_pred -CeEEEeecccCCCCCCCCCCCC-----ccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC
Confidence 99997776621 111111 355542 233344443 457888999999999885 33445
Q ss_pred CCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHhcCCCCCeEEEEeecCCCCCChhhhhhhcChh
Q 008762 231 RVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPL 310 (554)
Q Consensus 231 ~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~ 310 (554)
.-+..++++-+..=.+++|++.|++..-..+..|+......|+-+-|.+.+...|++.+++||.-.+
T Consensus 146 ~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~------------- 212 (332)
T PF07745_consen 146 PSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG------------- 212 (332)
T ss_dssp TT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-------------
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcc-------------
Confidence 5667788888888888999887764211122223221122455555666677799999999986422
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCcEEEeccccccC
Q 008762 311 YLDREVDTFSQLENTLKSSATSAVAWVGESGGAYN 345 (554)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~ 345 (554)
.++.+ ...++.+.++| +||+++.||+-.+.
T Consensus 213 ~l~~l---~~~l~~l~~ry--~K~V~V~Et~yp~t 242 (332)
T PF07745_consen 213 TLEDL---KNNLNDLASRY--GKPVMVVETGYPWT 242 (332)
T ss_dssp -HHHH---HHHHHHHHHHH--T-EEEEEEE---SB
T ss_pred hHHHH---HHHHHHHHHHh--CCeeEEEecccccc
Confidence 12222 23444555667 49999999986553
No 12
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.64 E-value=0.00013 Score=61.24 Aligned_cols=73 Identities=23% Similarity=0.172 Sum_probs=42.1
Q ss_pred CcceeeeeeccCCC-CC--C---CCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHhcC-CCC
Q 008762 212 YSIHGWELGNELCG-NG--V---GTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSG-QSL 284 (554)
Q Consensus 212 ~~l~~wElGNEp~~-~~--~---~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~~~-~~i 284 (554)
.+|.+|||+||+++ +. . ......+.|.+-.++..+++|+++|+. |..+|-... +... ++... +.+
T Consensus 9 ~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~---pvt~g~~~~-~~~~----~~~~~~~~~ 80 (88)
T PF12876_consen 9 PRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQ---PVTSGFWGG-DWED----LEQLQAENL 80 (88)
T ss_dssp GGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS----EE--B--S--TTH----HHHS--TT-
T ss_pred CCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCC---cEEeecccC-CHHH----HHHhchhcC
Confidence 35889999999444 22 1 123456788999999999999998863 444443222 1111 33333 679
Q ss_pred CeEEEEee
Q 008762 285 DVATHHIY 292 (554)
Q Consensus 285 d~vs~H~Y 292 (554)
|++|+|.|
T Consensus 81 DvisfH~Y 88 (88)
T PF12876_consen 81 DVISFHPY 88 (88)
T ss_dssp SSEEB-EE
T ss_pred CEEeeecC
Confidence 99999998
No 13
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.01 E-value=0.061 Score=54.14 Aligned_cols=210 Identities=13% Similarity=0.106 Sum_probs=100.8
Q ss_pred ccCchhHHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCCh-----HHHHHHHHHHH----hcCCccee
Q 008762 146 CLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDY-----TNAESFISYTV----KKNYSIHG 216 (554)
Q Consensus 146 ~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~-----~~A~~~l~y~~----~~g~~l~~ 216 (554)
.+.-+..|++.+||++.| .++.... +.-.. +. ..|.. +....+.+|.. ..+..+..
T Consensus 12 ~~n~~~~D~~~~~a~~~g-------i~v~gH~-l~W~~-~~------P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~ 76 (254)
T smart00633 12 QFNFSGADAIVNFAKENG-------IKVRGHT-LVWHS-QT------PDWVFNLSKETLLARLENHIKTVVGRYKGKIYA 76 (254)
T ss_pred ccChHHHHHHHHHHHHCC-------CEEEEEE-Eeecc-cC------CHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceE
Confidence 445567799999999999 6653221 11110 11 23322 22344555643 34556899
Q ss_pred eeeeccCCCCCCC---C-CC---CHHHHHHHHHHHHHHHHHHccCCCCCceEEc------cCCCC-C-hHHHHHHHHhcC
Q 008762 217 WELGNELCGNGVG---T-RV---AAAQYATDTISLRNVVQKIYTGVDSKPLIIA------PGGFF-D-AKWFKEFLDKSG 281 (554)
Q Consensus 217 wElGNEp~~~~~~---~-~~---t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vg------P~~~~-~-~~w~~~fl~~~~ 281 (554)
|++.|||...+.+ . .| -+.+|.. ...++.++++|+. + .++. +.... . ..+.+.+. +.+
T Consensus 77 wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~---~af~~ar~~~P~a--~-l~~Ndy~~~~~~~k~~~~~~~v~~l~-~~g 149 (254)
T smart00633 77 WDVVNEALHDNGSGLRRSVWYQILGEDYIE---KAFRYAREADPDA--K-LFYNDYNTEEPNAKRQAIYELVKKLK-AKG 149 (254)
T ss_pred EEEeeecccCCCcccccchHHHhcChHHHH---HHHHHHHHhCCCC--E-EEEeccCCcCccHHHHHHHHHHHHHH-HCC
Confidence 9999999763210 0 11 1124433 3345667777763 1 2221 10000 0 12333333 345
Q ss_pred CCCCeEEEEeecCCCCCChhhhhhhcChhhhHHHHHHHHHHHHHHHhcCCCCcEEEeccccccCCCCCCchhHHHHHHHH
Q 008762 282 QSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWY 361 (554)
Q Consensus 282 ~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vSdtf~aalw~ 361 (554)
..||.+-++..... +. + + ++.+...++.+. ..++|++++|....... + .=..|-++
T Consensus 150 ~~iDgiGlQ~H~~~-~~-~-------~---~~~~~~~l~~~~------~~g~pi~iTE~dv~~~~-----~-~~~qA~~~ 205 (254)
T smart00633 150 VPIDGIGLQSHLSL-GS-P-------N---IAEIRAALDRFA------SLGLEIQITELDISGYP-----N-PQAQAADY 205 (254)
T ss_pred CccceeeeeeeecC-CC-C-------C---HHHHHHHHHHHH------HcCCceEEEEeecCCCC-----c-HHHHHHHH
Confidence 56998888422110 10 1 1 112222222222 23799999998865421 1 12223344
Q ss_pred HHHHHHHhhcC-ceeeeeecccCc-------ccccccCCCCCcCcchHH
Q 008762 362 LDQLGMAAAHD-TKTYCRQSLIGG-------NYGLLNTTTFVPNPDYYS 402 (554)
Q Consensus 362 lD~Lg~aA~~g-~~v~~~q~ligg-------~Y~l~~~~~~~p~P~Yy~ 402 (554)
-+.+-.+.++. +..++-.++..+ .-+|+|.+ +.|+|.|++
T Consensus 206 ~~~l~~~~~~p~v~gi~~Wg~~d~~~W~~~~~~~L~d~~-~~~kpa~~~ 253 (254)
T smart00633 206 EEVFKACLAHPAVTGVTVWGVTDKYSWLDGGAPLLFDAN-YQPKPAYWA 253 (254)
T ss_pred HHHHHHHHcCCCeeEEEEeCCccCCcccCCCCceeECCC-CCCChhhhc
Confidence 45544444432 333333333221 22466666 788998864
No 14
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.17 Score=51.23 Aligned_cols=213 Identities=16% Similarity=0.141 Sum_probs=118.4
Q ss_pred cCCCcHHHHHHHHHcCCCeEecCCcccceEeeecCCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCccc
Q 008762 89 LDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQ 168 (554)
Q Consensus 89 ~~l~~~~L~~l~k~L~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~ 168 (554)
.+-..+...+++|+-|.-+||+ -.|.+... ..++.+|- +.-....--++..-++..|
T Consensus 61 ~ng~~qD~~~iLK~~GvNyvRl-------RvwndP~d---------sngn~ygg--GnnD~~k~ieiakRAk~~G----- 117 (403)
T COG3867 61 TNGVRQDALQILKNHGVNYVRL-------RVWNDPYD---------SNGNGYGG--GNNDLKKAIEIAKRAKNLG----- 117 (403)
T ss_pred cCChHHHHHHHHHHcCcCeEEE-------EEecCCcc---------CCCCccCC--CcchHHHHHHHHHHHHhcC-----
Confidence 3344556678889999999886 24655211 11222221 1111222256666677889
Q ss_pred cccEEEEEeecCCCCcccCCCCCCCCCChHHH----HHHHHHH-------HhcCCcceeeeeeccCCC---CCCCCCCCH
Q 008762 169 FRAKIVFGLNALTGRSIQNDGSVKGAWDYTNA----ESFISYT-------VKKNYSIHGWELGNELCG---NGVGTRVAA 234 (554)
Q Consensus 169 ~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A----~~~l~y~-------~~~g~~l~~wElGNEp~~---~~~~~~~t~ 234 (554)
.++++.+-+..-=........-.+|.--+- +++-+|+ ++.|....-.|+|||.++ |..|..-+-
T Consensus 118 --mKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f 195 (403)
T COG3867 118 --MKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNF 195 (403)
T ss_pred --cEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcCh
Confidence 999865544210000000001123432221 1223333 457888889999999987 333333345
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHhcCCCCCeEEEEeecCCCCCChhhhhhhcChhhhHH
Q 008762 235 AQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDR 314 (554)
Q Consensus 235 ~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~ 314 (554)
...++-+.+-.+++|++.|++..-..+.-|.......|+-+=|.+.+-..|++...+||.-.| +++++
T Consensus 196 ~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhg----tl~nL-------- 263 (403)
T COG3867 196 DKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHG----TLNNL-------- 263 (403)
T ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccC----cHHHH--------
Confidence 566666666677777777764322233334333345677666766777799999999987533 11211
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEecccccc
Q 008762 315 EVDTFSQLENTLKSSATSAVAWVGESGGAY 344 (554)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~p~wl~Etns~~ 344 (554)
-..+..+.++|. |.+.+-|+.-.|
T Consensus 264 ----~~nl~dia~rY~--K~VmV~Etay~y 287 (403)
T COG3867 264 ----TTNLNDIASRYH--KDVMVVETAYTY 287 (403)
T ss_pred ----HhHHHHHHHHhc--CeEEEEEeccee
Confidence 123445556664 889999988765
No 15
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.11 Score=54.79 Aligned_cols=181 Identities=15% Similarity=0.203 Sum_probs=100.9
Q ss_pred ceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHhcCCCCCeEEEEeec
Q 008762 214 IHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYN 293 (554)
Q Consensus 214 l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~~~~~id~vs~H~Y~ 293 (554)
..-+++-|||+.. ..-.+|-+-+. ...++.+|.+ .+-| ...++....|++ ..+.||+++.|.|.
T Consensus 105 kw~f~~~~~pn~~-----ad~~eyfk~y~---~~a~~~~p~i----~vg~---~w~~e~l~~~~k-~~d~idfvt~~a~~ 168 (428)
T COG3664 105 KWPFYSPNEPNLL-----ADKQEYFKLYD---ATARQRAPSI----QVGG---SWNTERLHEFLK-KADEIDFVTELANS 168 (428)
T ss_pred ecceeecCCCCcc-----cchHHHHHHHH---hhhhccCcce----eecc---ccCcHHHhhhhh-ccCcccceeecccc
Confidence 4477888999862 23334433222 2222344432 2222 222233445555 55679999999986
Q ss_pred CCCC-CChhhhhhh-cChhhhHHHHHHHHHHHHHHHhcCCCCcEEEeccccccCCCCCCchhHHHHHHHHHHHHHHHhh-
Q 008762 294 LGPG-VDQHLVEKI-LDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAA- 370 (554)
Q Consensus 294 ~~~g-~~~~~~~~~-l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vSdtf~aalw~lD~Lg~aA~- 370 (554)
.... .+....+.+ +.+. ....+..+.+++.+++++-++|+.+.|+|..+ ++..-+-++|+.|--.+..|..+..
T Consensus 169 ~~av~~~~~~~~~~~l~~~--~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt-~~~~~~n~sy~raa~i~~~Lr~~g~~ 245 (428)
T COG3664 169 VDAVDFSTPGAEEVKLSEL--KRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLT-GPREPTNGSYVRAAYIMRLLREAGSP 245 (428)
T ss_pred cccccccCCCchhhhhhhh--hhhhhHHHHHHHHHHhccCCCcceeecccccC-CCccccCceeehHHHHHHHHHhcCCh
Confidence 5321 111111122 2222 34556778888889988889999999999987 4555566777775555444444322
Q ss_pred ---------cCce-eeeeec--ccCcccccccCCCCCcCcchHHHHHHHHHcCCCeee
Q 008762 371 ---------HDTK-TYCRQS--LIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALS 416 (554)
Q Consensus 371 ---------~g~~-v~~~q~--ligg~Y~l~~~~~~~p~P~Yy~~lL~~~~~G~~vl~ 416 (554)
.... -.+.+. ++ +.+++++.- ..-+|.|+.++++.++ |..++.
T Consensus 246 v~a~~yW~~sdl~e~~g~~~~~~~-~gfel~~~~-~~rrpa~~~~l~~n~L-g~~~l~ 300 (428)
T COG3664 246 VDAFGYWTNSDLHEEHGPPEAPFV-GGFELFAPY-GGRRPAWMAALFFNRL-GRTLLS 300 (428)
T ss_pred hhhhhhhhcccccccCCCcccccc-cceeeeccc-ccchhHHHHHHHHHHH-HHHhhh
Confidence 1111 001221 11 222344433 3458999999999999 877654
No 16
>PRK10150 beta-D-glucuronidase; Provisional
Probab=94.49 E-value=1.6 Score=49.52 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=37.5
Q ss_pred ceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHhcCCCCCeEEEEeec
Q 008762 214 IHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYN 293 (554)
Q Consensus 214 l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~~~~~id~vs~H~Y~ 293 (554)
|..|.+|||+... ......-++++.+++|+.+|+ +|.-.+-..... ... ......+|++++|.|+
T Consensus 409 Ii~Ws~gNE~~~~-------~~~~~~~~~~l~~~~k~~Dpt---R~vt~~~~~~~~--~~~---~~~~~~~Dv~~~N~Y~ 473 (604)
T PRK10150 409 VVMWSIANEPASR-------EQGAREYFAPLAELTRKLDPT---RPVTCVNVMFAT--PDT---DTVSDLVDVLCLNRYY 473 (604)
T ss_pred EEEEeeccCCCcc-------chhHHHHHHHHHHHHHhhCCC---CceEEEecccCC--ccc---ccccCcccEEEEcccc
Confidence 7799999998641 112223356788889998876 333322110000 000 1122348999999886
Q ss_pred C
Q 008762 294 L 294 (554)
Q Consensus 294 ~ 294 (554)
.
T Consensus 474 ~ 474 (604)
T PRK10150 474 G 474 (604)
T ss_pred e
Confidence 4
No 17
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=94.43 E-value=0.4 Score=50.73 Aligned_cols=127 Identities=17% Similarity=0.084 Sum_probs=64.8
Q ss_pred HHHHHHHH---HhcCCcceeeeeeccCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCC----
Q 008762 200 AESFISYT---VKKNYSIHGWELGNELCGN-----GVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGF---- 267 (554)
Q Consensus 200 A~~~l~y~---~~~g~~l~~wElGNEp~~~-----~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~---- 267 (554)
|.-|++++ ++.|.++.+.+-=|||+.. +-|..+++++-++=.+.+++.|++.-.+ .+|..++..
T Consensus 157 A~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~----t~I~~~Ea~~~~~ 232 (384)
T PF14587_consen 157 ADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLS----TKISACEAGDWEY 232 (384)
T ss_dssp HHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-----EEEEEEESSGGG
T ss_pred HHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCC----ceEEecchhhHHH
Confidence 44444443 4679999999999999972 1267789988888888888888886322 245545421
Q ss_pred -CC--------hHHHHHHHHhcCC-------C-CCeEEEEeecCCCCCChhhhhhhcChhhhHHHHHHHHHHHHHHHhcC
Q 008762 268 -FD--------AKWFKEFLDKSGQ-------S-LDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSA 330 (554)
Q Consensus 268 -~~--------~~w~~~fl~~~~~-------~-id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 330 (554)
+. ..-+..|+..... . -..++-|.|.... + .+.+...-+.+.+.++++.
T Consensus 233 l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~v~~~i~~HsYwt~~---~-----------~~~l~~~R~~~~~~~~~~~ 298 (384)
T PF14587_consen 233 LYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPNVPNIISGHSYWTDS---P-----------WDDLRDIRKQLADKLDKYS 298 (384)
T ss_dssp GS---S-TTS---HHHHHHSTTSTT--TT-TTEEEEEEE--TT-SS---S-----------HHHHHHHHHHHHHHHHTTS
T ss_pred HhhccCCchhhhhhHHhhcCCCchhhhhccccchhheeecccccCC---C-----------HHHHHHHHHHHHHHHHhhC
Confidence 11 1234667654321 2 4588999997541 2 1223344466777788888
Q ss_pred CCCcEEEecccccc
Q 008762 331 TSAVAWVGESGGAY 344 (554)
Q Consensus 331 ~~~p~wl~Etns~~ 344 (554)
|+..+|.+|+..-.
T Consensus 299 ~~~~~wqtE~~il~ 312 (384)
T PF14587_consen 299 PGLKYWQTEYCILG 312 (384)
T ss_dssp S--EEEE----S--
T ss_pred cCCceeeeeeeecc
Confidence 99999999987653
No 18
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=93.80 E-value=2.3 Score=43.68 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCCccccccEEEEEeecC-CCCcccCC----CCCCCCCC---hHHHHHHHHHHHhcCCcceeeeeeccCC
Q 008762 153 DELNAFFKKSGCPCIQFRAKIVFGLNAL-TGRSIQND----GSVKGAWD---YTNAESFISYTVKKNYSIHGWELGNELC 224 (554)
Q Consensus 153 d~~~~f~~~~G~~~~~~~~~~i~glN~~-~~~~~~~~----~~~~g~W~---~~~A~~~l~y~~~~g~~l~~wElGNEp~ 224 (554)
++|+++|.+.| .-++--+... .+...... ......|. .++.+++|+....++ .|-.|.+|||+
T Consensus 62 ~~~~~~cD~~G-------ilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-SIi~W~~gNE~- 132 (298)
T PF02836_consen 62 PRFYDLCDELG-------ILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHP-SIIMWSLGNES- 132 (298)
T ss_dssp HHHHHHHHHHT--------EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-T-TEEEEEEEESS-
T ss_pred HHHHHHHhhcC-------CEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcC-chheeecCccC-
Confidence 67899999999 7666555441 11000000 00001111 122333444332222 37799999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHccC
Q 008762 225 GNGVGTRVAAAQYATDTISLRNVVQKIYTG 254 (554)
Q Consensus 225 ~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~ 254 (554)
.+...++++.+.+++.+|+
T Consensus 133 -----------~~~~~~~~l~~~~k~~Dpt 151 (298)
T PF02836_consen 133 -----------DYREFLKELYDLVKKLDPT 151 (298)
T ss_dssp -----------HHHHHHHHHHHHHHHH-TT
T ss_pred -----------ccccchhHHHHHHHhcCCC
Confidence 3455567788889998886
No 19
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=88.10 E-value=5.7 Score=41.26 Aligned_cols=196 Identities=17% Similarity=0.235 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHcCCCeEecCCcccceEeeecCCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCcccccc
Q 008762 92 NSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRA 171 (554)
Q Consensus 92 ~~~~L~~l~k~L~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~ 171 (554)
.-..+++++|..+...+|+ |+.. .++++-...+| .
T Consensus 14 ~p~~vv~l~ks~~i~~vri---------~d~~-----------------------------~~iL~a~a~S~-------i 48 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRI---------YDAD-----------------------------PSILRAFAGSG-------I 48 (310)
T ss_dssp -HHHHHHHHHHTT--EEEE---------SS-------------------------------HHHHHHHTTS---------
T ss_pred CHHHHHHHHHhcccccEEe---------ecCc-----------------------------HHHHHHHhcCC-------c
Confidence 5567889999988877775 3221 23344455689 9
Q ss_pred EEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHh---cCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 008762 172 KIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVK---KNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVV 248 (554)
Q Consensus 172 ~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~l~y~~~---~g~~l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l 248 (554)
++++++.-..-. ... =....|..|++--.. ..-++.+.-+|||.-.. ........-.+.+++++
T Consensus 49 ~v~v~vpN~~l~-~la-------~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~-----~~~~~lvpAm~ni~~aL 115 (310)
T PF00332_consen 49 EVMVGVPNEDLA-SLA-------SSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTG-----TDNAYLVPAMQNIHNAL 115 (310)
T ss_dssp EEEEEE-GGGHH-HHH-------HHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCC-----SGGGGHHHHHHHHHHHH
T ss_pred eeeeccChHHHH-Hhc-------cCHHHHhhhhhhcccccCcccceeeeecccccccC-----ccceeeccHHHHHHHHH
Confidence 999888621100 000 023456677764222 22459999999998652 11114555566778888
Q ss_pred HHHccCCCCCceEEcc------------C-CCCChHH------HHHHHHhcCCC--CCeEEEEeecCCCCCCh---hhh-
Q 008762 249 QKIYTGVDSKPLIIAP------------G-GFFDAKW------FKEFLDKSGQS--LDVATHHIYNLGPGVDQ---HLV- 303 (554)
Q Consensus 249 ~~~~~~~~~~~~~vgP------------~-~~~~~~w------~~~fl~~~~~~--id~vs~H~Y~~~~g~~~---~~~- 303 (554)
++.- ...++++.-| + +.+...+ +.+||+..+.. +.++.++-|..++..-+ +..
T Consensus 116 ~~~~--L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~ 193 (310)
T PF00332_consen 116 TAAG--LSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQ 193 (310)
T ss_dssp HHTT---TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-
T ss_pred HhcC--cCCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCCCceeccchhhhccCCcccCCccccccc
Confidence 7651 1123455433 1 1233333 45777776643 22322222221211100 000
Q ss_pred --hhhcCh--hhhHHHHHHHHHHHHHHHhcC-CCCcEEEeccccccCCC
Q 008762 304 --EKILDP--LYLDREVDTFSQLENTLKSSA-TSAVAWVGESGGAYNSG 347 (554)
Q Consensus 304 --~~~l~~--~~l~~~~~~~~~~~~~~~~~~-~~~p~wl~Etns~~~~G 347 (554)
....|+ .|-.-+..+++.+..++.+.+ +++++|++|||-.+.|+
T Consensus 194 ~~~~~~D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~ 242 (310)
T PF00332_consen 194 PNSGVVDGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGD 242 (310)
T ss_dssp SSS-SEETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSS
T ss_pred ccccccccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCC
Confidence 000011 111223355677777776543 57899999999766444
No 20
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=86.57 E-value=15 Score=38.04 Aligned_cols=127 Identities=18% Similarity=0.335 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHh-cCC-cceeeeeeccCCCCCCCC
Q 008762 153 DELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVK-KNY-SIHGWELGNELCGNGVGT 230 (554)
Q Consensus 153 d~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~l~y~~~-~g~-~l~~wElGNEp~~~~~~~ 230 (554)
|++|..+...| .=+|+.||.-.. .+........|+...-....+-... .+| |+.+|=+|||.-... .
T Consensus 82 d~CM~~~~~aG-------IYvi~Dl~~p~~--sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~--~ 150 (314)
T PF03198_consen 82 DECMSAFADAG-------IYVILDLNTPNG--SINRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDA--S 150 (314)
T ss_dssp HHHHHHHHHTT--------EEEEES-BTTB--S--TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-ST--T
T ss_pred HHHHHHHHhCC-------CEEEEecCCCCc--cccCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCC--C
Confidence 88999999999 888888887632 1221122236765443333222221 333 577999999986421 1
Q ss_pred CCCHHHHHHH-HHHHHHHHHHHccCCCCCceEEccCCCCCh---HHHHHHHHhcC---CCCCeEEEEeecCC
Q 008762 231 RVAAAQYATD-TISLRNVVQKIYTGVDSKPLIIAPGGFFDA---KWFKEFLDKSG---QSLDVATHHIYNLG 295 (554)
Q Consensus 231 ~~t~~~Ya~d-~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~---~w~~~fl~~~~---~~id~vs~H~Y~~~ 295 (554)
+..+..|.+- .|..++.|++. ..+..-+|-+..... .-+.++|. .+ ..+|++.+-.|-+.
T Consensus 151 ~t~aap~vKAavRD~K~Yi~~~----~~R~IPVGYsaaD~~~~r~~~a~Yl~-Cg~~~~~iDf~g~N~Y~WC 217 (314)
T PF03198_consen 151 NTNAAPYVKAAVRDMKAYIKSK----GYRSIPVGYSAADDAEIRQDLANYLN-CGDDDERIDFFGLNSYEWC 217 (314)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHS----SS----EEEEE---TTTHHHHHHHTT-BTT-----S-EEEEE----
T ss_pred CcccHHHHHHHHHHHHHHHHhc----CCCCCceeEEccCChhHHHHHHHHhc-CCCcccccceeeeccceec
Confidence 2334455433 22233444432 123345554443222 23445554 22 25999999999864
No 21
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=84.19 E-value=25 Score=35.55 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHhcCC-cceeeeeeccCCCCCCCCCC
Q 008762 154 ELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNY-SIHGWELGNELCGNGVGTRV 232 (554)
Q Consensus 154 ~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~l~y~~~~g~-~l~~wElGNEp~~~~~~~~~ 232 (554)
.+..-+++.| .++.+|+=.... ...+.+ -..+..|-...++ .+..+-+|||.=. +...
T Consensus 91 ~v~pAa~~~g-------~kv~lGiw~tdd----------~~~~~~-~til~ay~~~~~~d~v~~v~VGnEal~---r~~~ 149 (305)
T COG5309 91 NVLPAAEASG-------FKVFLGIWPTDD----------IHDAVE-KTILSAYLPYNGWDDVTTVTVGNEALN---RNDL 149 (305)
T ss_pred hhHHHHHhcC-------ceEEEEEeeccc----------hhhhHH-HHHHHHHhccCCCCceEEEEechhhhh---cCCC
Confidence 3445577888 999999855321 111111 1223334333344 3889999999743 3468
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 008762 233 AAAQYATDTISLRNVVQKI 251 (554)
Q Consensus 233 t~~~Ya~d~~~~~~~l~~~ 251 (554)
+++|.++.....|.++++.
T Consensus 150 tasql~~~I~~vrsav~~a 168 (305)
T COG5309 150 TASQLIEYIDDVRSAVKEA 168 (305)
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999865
No 22
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=81.15 E-value=73 Score=33.13 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=41.9
Q ss_pred CCCcEEEeccccccCCCCCCchhHHHHHHHHHHHHHHHhhcC---ceeeeeecccC------c---cc-ccccCCCCCcC
Q 008762 331 TSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHD---TKTYCRQSLIG------G---NY-GLLNTTTFVPN 397 (554)
Q Consensus 331 ~~~p~wl~Etns~~~~G~~~vSdtf~aalw~lD~Lg~aA~~g---~~v~~~q~lig------g---~Y-~l~~~~~~~p~ 397 (554)
-++++.++|.........+.....-..|-++-|++-++.++. +..+.-.++.. . .+ .|+|.+ +.|.
T Consensus 232 ~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-~~~K 310 (320)
T PF00331_consen 232 LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDED-YQPK 310 (320)
T ss_dssp TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TT-SBB-
T ss_pred cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCC-cCCC
Confidence 469999999876543222222223345667888887777776 45444333322 2 12 355655 8899
Q ss_pred cchHHHH
Q 008762 398 PDYYSAL 404 (554)
Q Consensus 398 P~Yy~~l 404 (554)
|-||+.+
T Consensus 311 pa~~~~~ 317 (320)
T PF00331_consen 311 PAYDAIV 317 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 23
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=66.12 E-value=1.9e+02 Score=30.95 Aligned_cols=61 Identities=11% Similarity=0.271 Sum_probs=39.3
Q ss_pred CCcCcchHHHHHHHHHcCCCeeeeee--cCCceeEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEE
Q 008762 394 FVPNPDYYSALLWHRLMGRNALSTSF--SGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVA 456 (554)
Q Consensus 394 ~~p~P~Yy~~lL~~~~~G~~vl~~~~--~~~~~v~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~ 456 (554)
|.-.|-||+.--|++++-+....+.. +.+..|.+-|.- +.+|+.++++.|++.... .++|+
T Consensus 432 fYKQPmfya~~hFSkFl~pGs~Rv~~~i~~~~~ve~~afl-npdGskvvVllnk~s~~~-~~~I~ 494 (518)
T KOG2566|consen 432 FYKQPMFYALGHFSKFLPPGSVRVGHSINQNLDVEATAFL-NPDGSKVVVLLNKNSLDS-PLTIK 494 (518)
T ss_pred HhhccHHHHHHHHhhcCCCCceEeeeeeccccccceeEEE-cCCCcEEEEEeccCCCCC-ceEEe
Confidence 34578999998899998554444433 333344444433 347899999999987664 55553
No 24
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=62.54 E-value=67 Score=34.07 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=32.3
Q ss_pred HHHHHHcCCCeEecCCcccceEeeecCCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCccccccEEEEE
Q 008762 97 LNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFG 176 (554)
Q Consensus 97 ~~l~k~L~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~g 176 (554)
+.++|.+|--.+|+|=- .|..- .| +. +.+.-+..|.+++.+++.| .+++++
T Consensus 16 ~~~m~~~G~n~vri~~~-----~W~~l------EP----~e-------G~ydF~~lD~~l~~a~~~G-------i~viL~ 66 (374)
T PF02449_consen 16 LRLMKEAGFNTVRIGEF-----SWSWL------EP----EE-------GQYDFSWLDRVLDLAAKHG-------IKVILG 66 (374)
T ss_dssp HHHHHHHT-SEEEE-CC-----EHHHH-------S----BT-------TB---HHHHHHHHHHHCTT--------EEEEE
T ss_pred HHHHHHcCCCEEEEEEe-----chhhc------cC----CC-------CeeecHHHHHHHHHHHhcc-------CeEEEE
Confidence 57778889999998642 23220 11 11 1223355799999999999 999988
Q ss_pred eec
Q 008762 177 LNA 179 (554)
Q Consensus 177 lN~ 179 (554)
+..
T Consensus 67 ~~~ 69 (374)
T PF02449_consen 67 TPT 69 (374)
T ss_dssp ECT
T ss_pred ecc
Confidence 864
No 25
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=57.59 E-value=34 Score=28.33 Aligned_cols=15 Identities=20% Similarity=0.545 Sum_probs=12.8
Q ss_pred CceEEcCceEEEEEe
Q 008762 531 QPVSVGPFSIVFVHM 545 (554)
Q Consensus 531 ~~~~lPp~S~~f~vl 545 (554)
..++|||+|...+.+
T Consensus 79 ~~~~lp~~s~~vl~~ 93 (95)
T PF02806_consen 79 ITVTLPPYSALVLKL 93 (95)
T ss_dssp EEEEESTTEEEEEEE
T ss_pred EEEEECCCEEEEEEE
Confidence 469999999998876
No 26
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=49.93 E-value=1.9e+02 Score=27.03 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHh---cCCcceeeeeeccCCCC
Q 008762 150 HRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVK---KNYSIHGWELGNELCGN 226 (554)
Q Consensus 150 ~~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~l~y~~~---~g~~l~~wElGNEp~~~ 226 (554)
.-.+.+++.|++.| .++++||++...--+. ....|..+....+++...+ +.-.+++|=|-+|++..
T Consensus 65 d~l~~~L~~A~~~G-------mkv~~Gl~~~~~~w~~----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~ 133 (166)
T PF14488_consen 65 DLLEMILDAADKYG-------MKVFVGLYFDPDYWDQ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY 133 (166)
T ss_pred cHHHHHHHHHHHcC-------CEEEEeCCCCchhhhc----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc
Confidence 34588999999999 9999999884321000 0112211111222222111 12268999999999862
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEcc
Q 008762 227 GVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAP 264 (554)
Q Consensus 227 ~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP 264 (554)
++.. .+.++.+.+.++++.+ .+|..+.|
T Consensus 134 ----~~~~---~~~~~~l~~~lk~~s~---~~Pv~ISp 161 (166)
T PF14488_consen 134 ----NWNA---PERFALLGKYLKQISP---GKPVMISP 161 (166)
T ss_pred ----ccch---HHHHHHHHHHHHHhCC---CCCeEEec
Confidence 2222 4456678888888855 35777766
No 27
>TIGR03356 BGL beta-galactosidase.
Probab=44.27 E-value=48 Score=36.07 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=63.3
Q ss_pred HHHHHHcCCCeEecCCcccceEeeecCCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCccccccEEEEE
Q 008762 97 LNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFG 176 (554)
Q Consensus 97 ~~l~k~L~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~g 176 (554)
+.+++.+|-..+|++=.++-. +-.+.+ .+ ++ - .-...+++++-+++.| .++|++
T Consensus 60 i~l~~~~G~~~~R~si~Wsri--~p~g~~----~~---n~---~-------~~~~y~~~i~~l~~~g-------i~pivt 113 (427)
T TIGR03356 60 VALMKELGVDAYRFSIAWPRI--FPEGTG----PV---NP---K-------GLDFYDRLVDELLEAG-------IEPFVT 113 (427)
T ss_pred HHHHHHcCCCeEEcccchhhc--ccCCCC----Cc---CH---H-------HHHHHHHHHHHHHHcC-------CeeEEe
Confidence 688899999999987665432 111110 00 00 0 1245689999999999 999988
Q ss_pred eecCCCCcccCCC-CCCCCCC-hHHHHHHHHHHH----hcCCcceeeeeeccCCC
Q 008762 177 LNALTGRSIQNDG-SVKGAWD-YTNAESFISYTV----KKNYSIHGWELGNELCG 225 (554)
Q Consensus 177 lN~~~~~~~~~~~-~~~g~W~-~~~A~~~l~y~~----~~g~~l~~wElGNEp~~ 225 (554)
|.=-.- +.. ...|.|. ++....+++|++ ..+..+++|+.=|||+.
T Consensus 114 L~Hfd~----P~~l~~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 114 LYHWDL----PQALEDRGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred eccCCc----cHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 853211 110 0125564 445667888874 45778999999999985
No 28
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=41.37 E-value=64 Score=34.19 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=28.7
Q ss_pred HHHhcCCCCcEEEeccccccCC-CC--CCchhHHHHHHHHHHHHHHHhhcCceee----eeecccC---cccccccCCCC
Q 008762 325 TLKSSATSAVAWVGESGGAYNS-GH--NLVTNAFVFSFWYLDQLGMAAAHDTKTY----CRQSLIG---GNYGLLNTTTF 394 (554)
Q Consensus 325 ~~~~~~~~~p~wl~Etns~~~~-G~--~~vSdtf~aalw~lD~Lg~aA~~g~~v~----~~q~lig---g~Y~l~~~~~~ 394 (554)
+++....++|+|+.|+.+...+ +. ....+-.. .+|..-.+. +|.+.+ .|+...| ..+|+++.+..
T Consensus 281 l~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~-~~~~~~~~A----~Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~ 355 (374)
T PF02449_consen 281 LMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGEL-RLWSWQAIA----HGADGILFWQWRQSRFGAEQFHGGLVDHDGR 355 (374)
T ss_dssp HHHHHTTT--EEEEEE--S--SSSSS-----TTHH-HHHHHHHHH----TT-S-EEEC-SB--SSSTTTTS--SB-TTS-
T ss_pred HHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHH-HHHHHHHHH----HhCCeeEeeeccCCCCCchhhhcccCCccCC
Confidence 3344467899999998654211 11 01111111 334333333 444322 3455555 46689998844
Q ss_pred CcCcchHHHH
Q 008762 395 VPNPDYYSAL 404 (554)
Q Consensus 395 ~p~P~Yy~~l 404 (554)
.|++.|.-..
T Consensus 356 ~~~~~~~e~~ 365 (374)
T PF02449_consen 356 EPTRRYREVA 365 (374)
T ss_dssp -B-HHHHHHH
T ss_pred CCCcHHHHHH
Confidence 7777776544
No 29
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=33.60 E-value=1.6e+02 Score=35.84 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=22.1
Q ss_pred ceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccC
Q 008762 214 IHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTG 254 (554)
Q Consensus 214 l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~ 254 (554)
|..|.+|||... ...++++.+++|+.+|+
T Consensus 441 Ii~WslGNE~~~------------g~~~~~~~~~~k~~Dpt 469 (1021)
T PRK10340 441 IIIWSLGNESGY------------GCNIRAMYHAAKALDDT 469 (1021)
T ss_pred EEEEECccCccc------------cHHHHHHHHHHHHhCCC
Confidence 779999999842 22456788999998875
No 30
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=32.41 E-value=2.6e+02 Score=34.14 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=21.2
Q ss_pred ceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccC
Q 008762 214 IHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTG 254 (554)
Q Consensus 214 l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~ 254 (554)
|..|.+|||+.. + ..++++.+++|+.+|+
T Consensus 454 Ii~WSlgNE~~~---g---------~~~~~l~~~~k~~Dpt 482 (1027)
T PRK09525 454 IIIWSLGNESGH---G---------ANHDALYRWIKSNDPS 482 (1027)
T ss_pred EEEEeCccCCCc---C---------hhHHHHHHHHHhhCCC
Confidence 779999999852 1 1245677888988875
No 31
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=30.34 E-value=7.1e+02 Score=26.71 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHH
Q 008762 151 RWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYT 207 (554)
Q Consensus 151 ~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~l~y~ 207 (554)
++.+=++-|+..| .|+++.|-=+.|.|...+ -++|.-++.|.
T Consensus 91 qi~~di~~CQS~G-------iKVlLSLGG~~GnYs~~~--------d~dA~~fA~~L 132 (568)
T KOG4701|consen 91 QIETDIQVCQSNG-------IKVLLSLGGYNGNYSLNN--------DDDATNFAFQL 132 (568)
T ss_pred hhhhHHHHHHhcC-------eEEEEeccCcccceeecc--------chhHHHHHHHH
Confidence 3344567899999 999988866665544432 34555555553
No 32
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=28.55 E-value=4.8e+02 Score=26.77 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=57.9
Q ss_pred ccCchhHHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHhcCCcceeeeeeccCCC
Q 008762 146 CLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCG 225 (554)
Q Consensus 146 ~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~l~y~~~~g~~l~~wElGNEp~~ 225 (554)
.++.++..++++.+.+.. -+.++.+..+. + .-..+..++++...+.|.++ ..+||=|.-.
T Consensus 90 ~l~~~~L~~l~~~i~~~~---------~~~~isi~trp----d------~l~~e~l~~L~~l~~~G~~~-~i~lGlQS~~ 149 (302)
T TIGR01212 90 YAPVEVLKEMYEQALSYD---------DVVGLSVGTRP----D------CVPDEVLDLLAEYVERGYEV-WVELGLQTAH 149 (302)
T ss_pred CCCHHHHHHHHHHHhCCC---------CEEEEEEEecC----C------cCCHHHHHHHHHhhhCCceE-EEEEccCcCC
Confidence 455666777777776543 23344444431 1 12344445555444445543 6788866543
Q ss_pred ----CCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEc-cCCCCChHHH--HHHHHhcCCCCCeEEEEeecCCCC
Q 008762 226 ----NGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIA-PGGFFDAKWF--KEFLDKSGQSLDVATHHIYNLGPG 297 (554)
Q Consensus 226 ----~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vg-P~~~~~~~w~--~~fl~~~~~~id~vs~H~Y~~~~g 297 (554)
...+...+.+++.+-.+. +++..-.... -.++| |+-. ..++. .+++... .+|.+++|.+..-+|
T Consensus 150 d~~L~~i~Rg~t~~~~~~ai~~----l~~~gi~v~~-~lI~GlPget-~e~~~~t~~~l~~l--~~d~i~i~~l~~~pg 220 (302)
T TIGR01212 150 DKTLKKINRGHDFACYVDAVKR----ARKRGIKVCS-HVILGLPGED-REEMMETAKIVSLL--DVDGIKIHPLHVVKG 220 (302)
T ss_pred HHHHHHHcCcChHHHHHHHHHH----HHHcCCEEEE-eEEECCCCCC-HHHHHHHHHHHHhc--CCCEEEEEEEEecCC
Confidence 123344565555443333 3332100001 14555 4322 22333 3344433 377888877655434
No 33
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=27.23 E-value=1.5e+02 Score=30.30 Aligned_cols=128 Identities=12% Similarity=0.064 Sum_probs=63.6
Q ss_pred ccCchhHHHHHHHHHHcCCCccccccEEEEEeecCCCC-cccCCCCCCCCCChHHHHHHHHHHHhcCCcceeeeeeccCC
Q 008762 146 CLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGR-SIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELC 224 (554)
Q Consensus 146 ~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~-~~~~~~~~~g~W~~~~A~~~l~y~~~~g~~l~~wElGNEp~ 224 (554)
.++.+....+++||.+.| ++-++- +.+=.. ....+.+....+......++++|++++|..|..|---+.-
T Consensus 28 g~~t~~~k~yIDfAa~~G-------~eYvlv-D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~- 98 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMG-------IEYVLV-DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETG- 98 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT--------SEEEE-BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHT-
T ss_pred CCCHHHHHHHHHHHHHcC-------CCEEEe-ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcc-
Confidence 457778899999999999 888764 554210 0000111223334567889999999999888777433221
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHhcCCCCCeEEEE
Q 008762 225 GNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHH 290 (554)
Q Consensus 225 ~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~~~~~id~vs~H 290 (554)
++...|-++.+++-+.+++. .-...|..+++-++..-..|.+++++.+...==.|.+|
T Consensus 99 -------~~~~~~~~~~~~~f~~~~~~-Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 99 -------GNVANLEKQLDEAFKLYAKW-GVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp -------TBHHHHHCCHHHHHHHHHHC-TEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEET
T ss_pred -------hhhHhHHHHHHHHHHHHHHc-CCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEec
Confidence 23333444433333333332 10012333333322222357777887665432356667
No 34
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=25.58 E-value=68 Score=28.68 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHcCCCeEecCCcccceEeeec
Q 008762 91 LNSNILLNAVKAFSPLKIRLGGTLQDKVIYDT 122 (554)
Q Consensus 91 l~~~~L~~l~k~L~p~~LRiGG~~~D~~~~~~ 122 (554)
.++-+|+...++||| |||=+=|..|+++||=
T Consensus 7 ~~~~RLlk~f~alGP-YlRE~qc~e~~ffFDC 37 (127)
T PRK10984 7 HPKSRLIKKFTALGP-YLREGQCEENRFFFDC 37 (127)
T ss_pred CCchHHHHHHHHhCc-hhchhcccCCCEEeee
Confidence 456778888899995 9999999999999874
No 35
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=23.63 E-value=61 Score=28.85 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHcCCCeEecCCcccceEeeec
Q 008762 91 LNSNILLNAVKAFSPLKIRLGGTLQDKVIYDT 122 (554)
Q Consensus 91 l~~~~L~~l~k~L~p~~LRiGG~~~D~~~~~~ 122 (554)
.++-+|+...++||| |||=+=|..|+++||=
T Consensus 5 ~~~~RLlk~f~alGP-YlRE~qc~e~~ffFDC 35 (125)
T PF07417_consen 5 PTHSRLLKKFAALGP-YLREGQCQEDRFFFDC 35 (125)
T ss_dssp S-HHHHHHHHHTT-T-TB-GGG-BTTEEEEEE
T ss_pred CchHHHHHHHHhhCc-hhcccccccCcEeeec
Confidence 356678888899995 9999999999999973
No 36
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=23.28 E-value=1.2e+03 Score=27.00 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=74.3
Q ss_pred HhcCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHhc--CCCCC
Q 008762 208 VKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKS--GQSLD 285 (554)
Q Consensus 208 ~~~g~~l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~~--~~~id 285 (554)
+.+|..|.|..+-||=.. + .+|. +.||+.+++.. -.+.+|++.+.... .+-..++... ...||
T Consensus 168 ~~~gl~idYvg~~NEr~~-------~-~~~i---k~lr~~l~~~g---y~~vkiva~D~~~~-~~~~~m~~D~~l~~avd 232 (669)
T PF02057_consen 168 KTHGLDIDYVGIWNERGF-------D-VNYI---KWLRKALNSNG---YNKVKIVAADNNWE-SISDDMLSDPELRNAVD 232 (669)
T ss_dssp HHH-----EE-S-TTS-----------HHHH---HHHHHHHHHTT----TT-EEEEEEE-ST-THHHHHHH-HHHHHH--
T ss_pred HHhCCCceEechhhccCC-------C-hhHH---HHHHHHHhhcc---ccceEEEEeCCCcc-chhhhhhcCHHHHhccc
Confidence 357999999988888642 2 3564 45777777641 24578999886532 3444444321 12499
Q ss_pred eEEEEeecCCCCCChhhhhhhcChhhhHHHHHHHHHHHHHHHhcCCCCcEEEeccccccCCCCCCchhHHHHHHH--HHH
Q 008762 286 VATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFW--YLD 363 (554)
Q Consensus 286 ~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vSdtf~aalw--~lD 363 (554)
++..| |+.. +.. . . .+. .+||+|-.|-.+-+ .+-.+++-| .++
T Consensus 233 vig~H-Y~~~---~~~--~-------------~-------a~~--~~K~lW~SE~~s~~-------~~~~g~g~~ar~ln 277 (669)
T PF02057_consen 233 VIGYH-YPGT---YSS--K-------------N-------AKL--TGKPLWSSEDYSTF-------NYNVGAGCWARILN 277 (669)
T ss_dssp EEEEE-S-TT--------H-------------H-------HHH--HT-EEEEEEEE-S--------TTHHHHHHHHHHHH
T ss_pred Eeccc-cCCC---CcH--H-------------H-------HHH--hCCCeEEcCCcccc-------cCcCchHHHHHHHH
Confidence 99999 4421 110 0 0 011 15999999965533 222233332 223
Q ss_pred HHHHHhhcCceeeeeecccCccccc--------cc-CC----CCCcCcchHHHHHHHHHcCC--CeeeeeecCCceeEEE
Q 008762 364 QLGMAAAHDTKTYCRQSLIGGNYGL--------LN-TT----TFVPNPDYYSALLWHRLMGR--NALSTSFSGTKKIRSY 428 (554)
Q Consensus 364 ~Lg~aA~~g~~v~~~q~ligg~Y~l--------~~-~~----~~~p~P~Yy~~lL~~~~~G~--~vl~~~~~~~~~v~~Y 428 (554)
+-- ..-....++-|.+|++.|.- +. .+ -+...+..|+..=+.++.-. +-|+. +..-..-..|
T Consensus 278 ~~y--v~g~mT~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG~Y~v~~~iWv~AHtTQFt~pGW~YL~~-~G~l~~gGSY 354 (669)
T PF02057_consen 278 RNY--VNGRMTAYINWPLVASYYPGLPYSRKGLMTANEPWSGHYEVDSPIWVTAHTTQFTQPGWRYLDS-VGHLRGGGSY 354 (669)
T ss_dssp HHH--HHH--SEEEEE-SEE-S-TTSTTTT-SSCE---TTT---B--HHHHHHHHHHTT--TT-EEES---EE-TTS-EE
T ss_pred hhh--hccceEEEEeehhhhhhcCCCCCCCccceEecCCcccceEecceeeeeeehhccCCCCeEEccC-ccccCCCcce
Confidence 221 12223455778888877742 21 11 23556788888777777633 33432 1001112345
Q ss_pred EEEEeCCCcEEEEE
Q 008762 429 AHCAKQSKGLVLLL 442 (554)
Q Consensus 429 A~~~~~~g~v~l~l 442 (554)
...+.+.|.+++++
T Consensus 355 VtLtd~~gn~tiii 368 (669)
T PF02057_consen 355 VTLTDGTGNYTIII 368 (669)
T ss_dssp EEEE-SSS-EEEEE
T ss_pred EEeecCCCCceEEE
Confidence 44444345666654
No 37
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=20.50 E-value=2.1e+02 Score=31.59 Aligned_cols=99 Identities=12% Similarity=0.162 Sum_probs=63.5
Q ss_pred HHHHHHcCCCeEecCCcccceEeeecCCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCccccccEEEEE
Q 008762 97 LNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFG 176 (554)
Q Consensus 97 ~~l~k~L~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~g 176 (554)
+.+++.||--..|++=.++=- +-.+... .+ +.- .-...+++++-+++.| .+++++
T Consensus 75 I~Lm~elG~~~yRfSIsWsRI--~P~G~~~---~~------N~~-------gl~~Y~~lid~l~~~G-------I~P~vT 129 (477)
T PRK15014 75 IKLFAEMGFKCFRTSIAWTRI--FPKGDEA---QP------NEE-------GLKFYDDMFDELLKYN-------IEPVIT 129 (477)
T ss_pred HHHHHHcCCCEEEecccceee--ccCCCCC---CC------CHH-------HHHHHHHHHHHHHHcC-------CEEEEE
Confidence 689999999888887664331 1111100 00 111 1134588889999999 999988
Q ss_pred eecCCCCcccCCCC-CC-CCC-ChHHHHHHHHHHH----hcCCcceeeeeeccCC
Q 008762 177 LNALTGRSIQNDGS-VK-GAW-DYTNAESFISYTV----KKNYSIHGWELGNELC 224 (554)
Q Consensus 177 lN~~~~~~~~~~~~-~~-g~W-~~~~A~~~l~y~~----~~g~~l~~wElGNEp~ 224 (554)
|.=-.. +..- .. |.| +++.+..+++||. ..+..|++|--=|||+
T Consensus 130 L~H~dl----P~~L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~ 180 (477)
T PRK15014 130 LSHFEM----PLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEIN 180 (477)
T ss_pred eeCCCC----CHHHHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcc
Confidence 853221 1000 12 678 5566777889974 5788899999999998
No 38
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=20.37 E-value=8.9e+02 Score=24.40 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHhcCCcceeeeeeccCCCCCCCCC
Q 008762 152 WDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTR 231 (554)
Q Consensus 152 wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~l~y~~~~g~~l~~wElGNEp~~~~~~~~ 231 (554)
.+.+++..++.| .+..|=++-.. .++-.++++...+. .+||||=-+.+..-..
T Consensus 30 t~riL~lL~~~g-------ikATFFv~g~~---------------~e~~p~lir~i~~~-----GhEIgsHg~sH~~l~~ 82 (265)
T TIGR03006 30 TDRILDLLDRHG-------VKATFFTLGWV---------------AERYPELVRRIVAA-----GHELASHGYGHERVTT 82 (265)
T ss_pred HHHHHHHHHHcC-------CcEEEEEeccc---------------hhhCHHHHHHHHHc-----CCEeeeccccCcCchh
Confidence 478899999999 99988885321 11122344444433 4688887665332346
Q ss_pred CCHHHHHHHHHHHHHHHHHHccCCCCCc-eEEccCCCC--ChHHHHHHHHhcCCC
Q 008762 232 VAAAQYATDTISLRNVVQKIYTGVDSKP-LIIAPGGFF--DAKWFKEFLDKSGQS 283 (554)
Q Consensus 232 ~t~~~Ya~d~~~~~~~l~~~~~~~~~~~-~~vgP~~~~--~~~w~~~fl~~~~~~ 283 (554)
++.++..+|..+-.++|+++... .+ -+..|+... ...|..+.|.+.|=.
T Consensus 83 ls~ee~~~eI~~s~~~Le~itG~---~~~gfRaP~~s~~~~t~~a~~iL~e~Gy~ 134 (265)
T TIGR03006 83 QTPEAFRADIRRSKALLEDLSGQ---PVRGYRAPSFSIGKKNLWALDVLAEAGYR 134 (265)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCC---CceEEECCCCCCCCCcHHHHHHHHHCCCE
Confidence 88999999999999999987432 22 344665432 336777888877643
Done!