BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008764
         (554 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
           P
          Length = 917

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 11/104 (10%)

Query: 365 MTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLE 424
           +T  +   E + E      +   +K  KL    W    E E  Q        K  Q + E
Sbjct: 625 ITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQ--------KHNQSEYE 676

Query: 425 VAAGKLAECQKTIQSLGKQLKSLA---TLEDFLIDTASIPEFSR 465
            +AG+   C KT   + K+L+  +   T ED+L +   +P  SR
Sbjct: 677 DSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSR 720


>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
          Length = 897

 Score = 30.0 bits (66), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 11/104 (10%)

Query: 365 MTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLE 424
           +T  +   E + E      +   +K  KL    W    E E  Q        K  Q + E
Sbjct: 625 ITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQ--------KHNQSEYE 676

Query: 425 VAAGKLAECQKTIQSLGKQLKSLA---TLEDFLIDTASIPEFSR 465
            +AG+   C KT   + K+L+  +   T ED+L +   +P  SR
Sbjct: 677 DSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSR 720


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.121    0.318 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,736,959
Number of Sequences: 62578
Number of extensions: 390634
Number of successful extensions: 1095
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 100
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)