Query 008764
Match_columns 554
No_of_seqs 360 out of 1916
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 16:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05911 DUF869: Plant protein 100.0 3.3E-45 7.2E-50 404.3 43.0 455 1-457 86-769 (769)
2 KOG0933 Structural maintenance 100.0 1.4E-27 3E-32 260.0 41.4 367 97-467 505-959 (1174)
3 COG1196 Smc Chromosome segrega 99.9 1.4E-19 3E-24 215.6 48.9 108 151-262 588-702 (1163)
4 TIGR02169 SMC_prok_A chromosom 99.9 1.4E-18 3E-23 208.8 50.0 91 152-250 596-697 (1164)
5 KOG0964 Structural maintenance 99.9 6.6E-18 1.4E-22 184.3 42.1 344 28-378 427-839 (1200)
6 KOG0996 Structural maintenance 99.8 1.5E-15 3.2E-20 169.5 42.4 243 152-402 690-991 (1293)
7 KOG0018 Structural maintenance 99.8 5.4E-15 1.2E-19 164.0 37.3 278 155-448 580-890 (1141)
8 TIGR02168 SMC_prok_B chromosom 99.6 1.4E-10 3E-15 139.8 50.9 107 153-267 599-717 (1179)
9 TIGR02168 SMC_prok_B chromosom 99.5 4.3E-10 9.3E-15 135.5 46.4 116 205-320 644-763 (1179)
10 TIGR02169 SMC_prok_A chromosom 99.2 2.2E-06 4.8E-11 103.6 51.4 46 233-278 673-718 (1164)
11 COG1196 Smc Chromosome segrega 99.2 1.6E-06 3.4E-11 104.5 46.5 54 235-288 668-721 (1163)
12 KOG0250 DNA repair protein RAD 98.9 4.2E-05 9.1E-10 87.2 43.3 85 4-88 376-463 (1074)
13 PRK02224 chromosome segregatio 98.8 0.00019 4E-09 84.7 46.6 78 3-80 317-396 (880)
14 PF00261 Tropomyosin: Tropomyo 98.7 1.9E-05 4.2E-10 78.2 29.1 133 307-444 95-227 (237)
15 KOG0964 Structural maintenance 98.7 0.00025 5.5E-09 79.6 40.2 44 151-194 521-571 (1200)
16 PRK02224 chromosome segregatio 98.7 0.00058 1.3E-08 80.5 45.9 34 33-66 363-396 (880)
17 KOG0996 Structural maintenance 98.7 0.00014 3.1E-09 83.1 35.3 175 228-402 779-963 (1293)
18 KOG0933 Structural maintenance 98.5 0.0041 8.9E-08 70.5 48.4 72 30-101 396-467 (1174)
19 KOG0161 Myosin class II heavy 98.4 0.00058 1.3E-08 83.6 35.1 138 227-364 838-975 (1930)
20 KOG0250 DNA repair protein RAD 98.4 0.00074 1.6E-08 77.4 33.5 171 279-449 284-464 (1074)
21 KOG0161 Myosin class II heavy 98.4 0.00069 1.5E-08 83.0 35.1 52 273-324 954-1005(1930)
22 KOG0977 Nuclear envelope prote 98.4 0.00062 1.3E-08 73.7 29.9 179 224-402 39-218 (546)
23 PHA02562 46 endonuclease subun 98.3 0.001 2.2E-08 74.4 31.7 8 473-480 459-466 (562)
24 PF12128 DUF3584: Protein of u 98.3 0.025 5.5E-07 68.8 47.7 72 28-99 464-535 (1201)
25 PF07888 CALCOCO1: Calcium bin 98.2 0.0099 2.1E-07 64.6 34.7 52 226-277 142-193 (546)
26 PF10174 Cast: RIM-binding pro 98.2 0.026 5.6E-07 64.6 39.6 22 80-101 181-202 (775)
27 PF09730 BicD: Microtubule-ass 98.2 0.026 5.6E-07 63.7 42.1 63 42-104 123-185 (717)
28 PRK11637 AmiB activator; Provi 98.2 0.017 3.7E-07 62.4 35.8 79 225-303 45-123 (428)
29 PF10174 Cast: RIM-binding pro 98.1 0.031 6.8E-07 63.9 43.6 53 48-100 115-167 (775)
30 PRK11637 AmiB activator; Provi 98.1 0.0092 2E-07 64.5 32.5 76 232-307 45-120 (428)
31 PF09726 Macoilin: Transmembra 98.1 0.0072 1.6E-07 68.6 32.0 89 228-316 419-514 (697)
32 PHA02562 46 endonuclease subun 98.1 0.0059 1.3E-07 68.2 30.9 36 366-401 336-371 (562)
33 PRK04778 septation ring format 98.0 0.043 9.3E-07 61.5 36.7 27 72-98 102-128 (569)
34 PRK03918 chromosome segregatio 98.0 0.016 3.4E-07 68.5 34.6 26 424-449 401-426 (880)
35 KOG0994 Extracellular matrix g 98.0 0.063 1.4E-06 61.9 38.0 69 239-307 1568-1636(1758)
36 PRK03918 chromosome segregatio 98.0 0.028 6E-07 66.4 35.6 31 418-448 402-432 (880)
37 PF00038 Filament: Intermediat 98.0 0.034 7.3E-07 57.4 35.2 39 358-396 214-252 (312)
38 PF00038 Filament: Intermediat 97.9 0.035 7.5E-07 57.3 36.8 32 227-258 4-35 (312)
39 PF07888 CALCOCO1: Calcium bin 97.9 0.052 1.1E-06 59.2 40.7 21 428-448 438-458 (546)
40 PF12718 Tropomyosin_1: Tropom 97.9 0.0034 7.3E-08 57.1 21.0 11 303-313 48-58 (143)
41 PF05667 DUF812: Protein of un 97.9 0.0083 1.8E-07 66.8 27.9 86 358-446 445-530 (594)
42 PF05667 DUF812: Protein of un 97.9 0.07 1.5E-06 59.6 34.6 51 226-276 327-377 (594)
43 KOG0977 Nuclear envelope prote 97.9 0.033 7.2E-07 60.7 31.0 80 368-448 304-383 (546)
44 KOG4674 Uncharacterized conser 97.9 0.14 3.1E-06 62.6 40.4 84 5-96 634-717 (1822)
45 KOG0994 Extracellular matrix g 97.9 0.1 2.2E-06 60.4 42.8 36 35-70 1227-1262(1758)
46 KOG0971 Microtubule-associated 97.9 0.077 1.7E-06 59.9 33.8 30 410-439 500-529 (1243)
47 KOG0971 Microtubule-associated 97.9 0.052 1.1E-06 61.2 32.4 17 224-240 228-244 (1243)
48 PRK04778 septation ring format 97.9 0.087 1.9E-06 59.1 44.4 68 29-96 82-154 (569)
49 COG1340 Uncharacterized archae 97.8 0.045 9.7E-07 55.0 35.4 13 426-438 233-245 (294)
50 PF09726 Macoilin: Transmembra 97.8 0.035 7.6E-07 63.1 31.5 26 422-447 630-655 (697)
51 PF14662 CCDC155: Coiled-coil 97.8 0.035 7.7E-07 52.1 26.7 106 292-397 83-188 (193)
52 PF05701 WEMBL: Weak chloropla 97.8 0.11 2.5E-06 57.4 34.6 104 299-402 283-386 (522)
53 PRK01156 chromosome segregatio 97.7 0.15 3.2E-06 60.5 36.7 29 422-450 417-445 (895)
54 PRK09039 hypothetical protein; 97.7 0.016 3.4E-07 60.6 24.6 17 227-243 46-62 (343)
55 COG1579 Zn-ribbon protein, pos 97.7 0.03 6.5E-07 54.9 24.5 54 327-380 91-144 (239)
56 PRK04863 mukB cell division pr 97.7 0.082 1.8E-06 65.0 33.5 45 227-271 286-330 (1486)
57 COG1579 Zn-ribbon protein, pos 97.7 0.032 6.9E-07 54.8 24.5 49 333-381 90-138 (239)
58 PF05701 WEMBL: Weak chloropla 97.6 0.18 3.9E-06 55.9 34.3 49 31-79 32-80 (522)
59 PRK09039 hypothetical protein; 97.6 0.0099 2.1E-07 62.1 21.5 11 536-546 312-322 (343)
60 KOG4643 Uncharacterized coiled 97.6 0.23 5E-06 56.9 34.8 51 224-274 174-224 (1195)
61 KOG0995 Centromere-associated 97.6 0.18 3.8E-06 54.8 32.1 16 154-169 163-178 (581)
62 KOG4674 Uncharacterized conser 97.6 0.43 9.2E-06 58.7 46.1 44 410-453 847-890 (1822)
63 PRK01156 chromosome segregatio 97.6 0.34 7.4E-06 57.4 47.7 9 82-90 423-431 (895)
64 PRK04863 mukB cell division pr 97.6 0.074 1.6E-06 65.4 30.6 30 245-274 297-326 (1486)
65 COG4942 Membrane-bound metallo 97.5 0.21 4.6E-06 52.8 32.6 7 536-542 348-354 (420)
66 KOG1029 Endocytic adaptor prot 97.4 0.21 4.6E-06 55.6 28.4 58 315-372 441-498 (1118)
67 PF15070 GOLGA2L5: Putative go 97.3 0.45 9.7E-06 53.5 31.7 19 384-402 198-216 (617)
68 KOG1003 Actin filament-coating 97.3 0.15 3.3E-06 47.9 27.9 8 233-240 10-17 (205)
69 TIGR02680 conserved hypothetic 97.3 0.37 8E-06 59.5 32.4 38 226-263 741-778 (1353)
70 PF15070 GOLGA2L5: Putative go 97.3 0.5 1.1E-05 53.1 33.2 57 225-281 85-141 (617)
71 PF04849 HAP1_N: HAP1 N-termin 97.3 0.26 5.5E-06 50.1 25.6 100 337-448 204-303 (306)
72 PF12128 DUF3584: Protein of u 97.3 0.89 1.9E-05 55.7 45.9 50 46-95 468-517 (1201)
73 KOG0980 Actin-binding protein 97.3 0.57 1.2E-05 53.2 33.2 8 196-203 276-283 (980)
74 PF14662 CCDC155: Coiled-coil 97.2 0.19 4.1E-06 47.3 27.3 62 332-393 67-128 (193)
75 KOG0980 Actin-binding protein 97.2 0.62 1.3E-05 52.9 30.9 34 410-443 529-562 (980)
76 KOG0976 Rho/Rac1-interacting s 97.2 0.59 1.3E-05 52.4 39.2 12 436-447 509-520 (1265)
77 PF06160 EzrA: Septation ring 97.2 0.6 1.3E-05 52.3 38.8 50 47-96 101-150 (560)
78 KOG0978 E3 ubiquitin ligase in 97.1 0.67 1.5E-05 52.1 29.1 66 30-95 45-110 (698)
79 PF15619 Lebercilin: Ciliary p 97.1 0.29 6.2E-06 46.9 24.6 28 227-254 12-39 (194)
80 KOG0999 Microtubule-associated 97.1 0.6 1.3E-05 50.3 29.6 18 223-240 11-28 (772)
81 PF10473 CENP-F_leu_zip: Leuci 97.1 0.22 4.8E-06 44.9 21.0 88 278-365 12-99 (140)
82 PF09755 DUF2046: Uncharacteri 97.0 0.54 1.2E-05 47.7 35.4 63 294-356 110-173 (310)
83 PF06160 EzrA: Septation ring 96.9 1 2.2E-05 50.5 36.4 89 355-448 346-434 (560)
84 KOG0018 Structural maintenance 96.9 0.94 2E-05 52.6 28.3 10 449-458 496-505 (1141)
85 PF09730 BicD: Microtubule-ass 96.9 1.2 2.7E-05 50.6 33.1 56 389-449 266-321 (717)
86 PF08317 Spc7: Spc7 kinetochor 96.9 0.74 1.6E-05 47.9 30.6 67 281-347 133-199 (325)
87 KOG1850 Myosin-like coiled-coi 96.8 0.67 1.4E-05 46.7 34.6 90 363-452 225-316 (391)
88 KOG0979 Structural maintenance 96.8 1.5 3.2E-05 50.8 28.9 24 437-460 429-453 (1072)
89 KOG0978 E3 ubiquitin ligase in 96.8 1.4 3.1E-05 49.6 32.2 27 422-448 595-621 (698)
90 KOG0995 Centromere-associated 96.7 1.2 2.6E-05 48.5 34.7 20 117-136 63-86 (581)
91 PF15619 Lebercilin: Ciliary p 96.7 0.59 1.3E-05 44.8 26.5 17 428-444 171-187 (194)
92 COG4372 Uncharacterized protei 96.7 0.94 2E-05 46.9 31.3 92 229-320 76-174 (499)
93 KOG4673 Transcription factor T 96.7 1.4 3.1E-05 48.7 29.8 24 227-250 346-369 (961)
94 TIGR01843 type_I_hlyD type I s 96.7 1.1 2.3E-05 48.0 26.2 19 227-245 81-99 (423)
95 KOG0946 ER-Golgi vesicle-tethe 96.7 1.4 3E-05 49.8 26.6 55 251-305 660-714 (970)
96 PF09789 DUF2353: Uncharacteri 96.6 0.91 2E-05 46.6 23.5 52 350-401 130-181 (319)
97 PRK11281 hypothetical protein; 96.6 2.6 5.6E-05 50.7 32.3 37 412-448 297-333 (1113)
98 PF14915 CCDC144C: CCDC144C pr 96.6 0.93 2E-05 45.6 32.6 82 321-402 147-228 (305)
99 PF04849 HAP1_N: HAP1 N-termin 96.6 1 2.2E-05 45.9 25.2 58 325-382 206-263 (306)
100 KOG0976 Rho/Rac1-interacting s 96.6 1.9 4.1E-05 48.6 41.1 148 302-451 328-479 (1265)
101 KOG4643 Uncharacterized coiled 96.5 2.5 5.3E-05 49.0 41.9 17 79-95 202-218 (1195)
102 KOG0979 Structural maintenance 96.5 2.5 5.5E-05 49.0 28.2 12 532-543 525-536 (1072)
103 TIGR00634 recN DNA repair prot 96.5 1.3 2.8E-05 49.8 25.9 38 238-275 165-202 (563)
104 PF13851 GAS: Growth-arrest sp 96.5 0.93 2E-05 43.7 27.9 133 264-400 29-162 (201)
105 PF05010 TACC: Transforming ac 96.4 0.94 2E-05 43.7 29.9 45 296-340 68-112 (207)
106 smart00787 Spc7 Spc7 kinetocho 96.4 1.4 3E-05 45.5 29.2 160 279-453 126-289 (312)
107 PF10481 CENP-F_N: Cenp-F N-te 96.4 0.88 1.9E-05 45.0 20.4 68 277-344 61-128 (307)
108 TIGR01843 type_I_hlyD type I s 96.4 1.8 3.9E-05 46.2 25.5 19 232-250 79-97 (423)
109 KOG0999 Microtubule-associated 96.3 2.3 4.9E-05 46.1 32.3 25 226-250 7-31 (772)
110 TIGR01005 eps_transp_fam exopo 96.2 1.9 4.2E-05 50.1 26.3 28 249-276 195-222 (754)
111 PF08317 Spc7: Spc7 kinetochor 96.2 2 4.3E-05 44.7 29.4 21 230-250 78-98 (325)
112 KOG0963 Transcription factor/C 96.1 2.9 6.2E-05 46.2 30.8 56 324-379 248-311 (629)
113 PF01576 Myosin_tail_1: Myosin 96.1 0.0014 3.1E-08 76.4 0.0 18 5-22 2-19 (859)
114 COG4372 Uncharacterized protei 96.1 2.2 4.7E-05 44.3 33.6 57 346-402 217-273 (499)
115 PRK10929 putative mechanosensi 96.1 4.9 0.00011 48.3 32.7 34 415-448 280-313 (1109)
116 KOG2129 Uncharacterized conser 96.1 2.3 5E-05 44.5 31.9 30 222-251 45-74 (552)
117 TIGR03007 pepcterm_ChnLen poly 96.0 2.3 5E-05 46.8 24.9 39 304-342 254-292 (498)
118 KOG4673 Transcription factor T 96.0 3.3 7.2E-05 46.0 30.5 14 385-398 584-597 (961)
119 PF01576 Myosin_tail_1: Myosin 95.9 0.0021 4.5E-08 75.1 0.0 38 364-401 325-362 (859)
120 COG3883 Uncharacterized protei 95.8 2.3 4.9E-05 42.5 28.6 64 229-292 33-96 (265)
121 KOG1899 LAR transmembrane tyro 95.8 3.9 8.3E-05 45.0 24.7 85 232-316 109-193 (861)
122 KOG0612 Rho-associated, coiled 95.8 5.9 0.00013 47.0 30.5 36 252-287 498-533 (1317)
123 PF05010 TACC: Transforming ac 95.7 2.1 4.6E-05 41.4 28.1 41 415-455 162-202 (207)
124 TIGR03007 pepcterm_ChnLen poly 95.7 4.4 9.6E-05 44.6 26.5 22 253-274 166-187 (498)
125 PF06008 Laminin_I: Laminin Do 95.7 2.8 6E-05 42.2 32.4 95 224-318 21-115 (264)
126 PF10481 CENP-F_N: Cenp-F N-te 95.6 1.9 4E-05 42.8 18.9 109 249-357 19-127 (307)
127 COG5185 HEC1 Protein involved 95.6 4 8.7E-05 43.5 27.0 15 155-169 199-213 (622)
128 TIGR01005 eps_transp_fam exopo 95.6 2.8 6E-05 48.8 24.0 17 234-250 201-217 (754)
129 KOG1899 LAR transmembrane tyro 95.5 5 0.00011 44.2 28.1 22 528-549 408-430 (861)
130 KOG2991 Splicing regulator [RN 95.4 2.9 6.4E-05 41.0 30.5 96 365-475 234-329 (330)
131 TIGR01000 bacteriocin_acc bact 95.3 5.6 0.00012 43.4 24.6 27 225-251 95-121 (457)
132 PF07058 Myosin_HC-like: Myosi 95.3 3.8 8.2E-05 41.3 23.6 15 476-490 191-205 (351)
133 KOG0243 Kinesin-like protein [ 95.2 8.9 0.00019 45.2 26.9 14 196-213 293-308 (1041)
134 COG4477 EzrA Negative regulato 95.2 6 0.00013 43.0 37.1 116 327-447 318-436 (570)
135 TIGR02680 conserved hypothetic 95.1 13 0.00027 46.4 34.0 41 233-273 741-781 (1353)
136 PF05483 SCP-1: Synaptonemal c 95.0 7.5 0.00016 43.4 32.6 74 349-427 453-526 (786)
137 PF15066 CAGE1: Cancer-associa 95.0 6.2 0.00013 42.1 25.9 100 243-346 319-425 (527)
138 PF13870 DUF4201: Domain of un 94.9 3.5 7.5E-05 38.8 23.8 20 422-441 153-172 (177)
139 PF08614 ATG16: Autophagy prot 94.9 0.51 1.1E-05 45.3 12.7 6 253-258 79-84 (194)
140 KOG4360 Uncharacterized coiled 94.8 3.1 6.8E-05 44.7 19.1 23 228-250 160-182 (596)
141 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.8 2.9 6.3E-05 37.4 20.5 25 422-446 106-130 (132)
142 PRK10869 recombination and rep 94.8 8.9 0.00019 42.9 27.2 39 238-276 161-199 (553)
143 PF06818 Fez1: Fez1; InterPro 94.7 4.2 9E-05 39.0 21.5 22 362-383 133-154 (202)
144 PF13514 AAA_27: AAA domain 94.6 15 0.00033 44.8 29.4 24 290-313 808-831 (1111)
145 PF04111 APG6: Autophagy prote 94.4 1.1 2.5E-05 46.2 14.7 30 373-402 105-134 (314)
146 PF04111 APG6: Autophagy prote 94.3 1.1 2.3E-05 46.4 14.3 78 302-379 55-132 (314)
147 KOG0243 Kinesin-like protein [ 94.3 11 0.00025 44.4 23.5 24 378-401 536-559 (1041)
148 COG0419 SbcC ATPase involved i 94.3 15 0.00033 43.7 34.7 24 423-446 419-442 (908)
149 PF00769 ERM: Ezrin/radixin/mo 94.3 5.6 0.00012 39.6 18.8 10 392-401 186-195 (246)
150 PRK10246 exonuclease subunit S 94.1 18 0.00039 43.8 31.8 32 424-455 856-887 (1047)
151 PF10146 zf-C4H2: Zinc finger- 94.1 3.1 6.7E-05 41.0 16.2 22 352-373 80-101 (230)
152 TIGR03017 EpsF chain length de 93.9 11 0.00024 40.7 25.5 28 249-276 172-199 (444)
153 KOG4807 F-actin binding protei 93.9 9.3 0.0002 39.8 25.7 41 210-250 281-321 (593)
154 PF06818 Fez1: Fez1; InterPro 93.9 6.3 0.00014 37.8 23.6 16 229-244 12-27 (202)
155 PF06008 Laminin_I: Laminin Do 93.8 8.1 0.00018 38.8 28.9 56 243-298 54-109 (264)
156 PF04582 Reo_sigmaC: Reovirus 93.8 0.13 2.9E-06 52.5 6.2 74 228-301 29-102 (326)
157 PF15066 CAGE1: Cancer-associa 93.7 11 0.00025 40.2 29.6 54 264-317 364-424 (527)
158 COG0419 SbcC ATPase involved i 93.7 20 0.00043 42.8 33.8 28 421-448 410-437 (908)
159 TIGR03017 EpsF chain length de 93.6 12 0.00027 40.3 22.1 13 450-462 377-389 (444)
160 smart00787 Spc7 Spc7 kinetocho 93.6 10 0.00022 39.2 29.7 48 353-400 211-258 (312)
161 KOG0804 Cytoplasmic Zn-finger 93.5 9.4 0.0002 40.6 19.2 12 436-447 436-447 (493)
162 KOG1853 LIS1-interacting prote 93.5 8.2 0.00018 37.9 19.9 15 481-495 294-308 (333)
163 PF00769 ERM: Ezrin/radixin/mo 93.2 9.8 0.00021 37.9 18.8 16 432-447 186-201 (246)
164 PF12325 TMF_TATA_bd: TATA ele 93.1 5.9 0.00013 34.9 15.2 22 227-248 23-44 (120)
165 PF05911 DUF869: Plant protein 93.0 22 0.00047 41.3 34.8 8 389-396 191-198 (769)
166 TIGR00634 recN DNA repair prot 92.9 19 0.00042 40.4 26.7 43 239-281 159-201 (563)
167 PF13870 DUF4201: Domain of un 92.8 8.6 0.00019 36.1 23.5 6 239-244 18-23 (177)
168 PF05483 SCP-1: Synaptonemal c 92.8 20 0.00043 40.2 34.9 14 428-441 349-362 (786)
169 PF09789 DUF2353: Uncharacteri 92.7 14 0.0003 38.2 26.4 49 330-378 131-179 (319)
170 PF09728 Taxilin: Myosin-like 92.6 14 0.0003 38.1 33.1 87 361-447 217-305 (309)
171 KOG4360 Uncharacterized coiled 92.6 10 0.00022 41.0 18.0 29 234-262 159-187 (596)
172 COG2433 Uncharacterized conser 92.3 7.9 0.00017 42.8 17.3 16 363-378 477-492 (652)
173 PF05557 MAD: Mitotic checkpoi 92.2 0.15 3.2E-06 59.0 4.5 55 414-468 503-557 (722)
174 KOG2991 Splicing regulator [RN 92.1 13 0.00029 36.6 23.0 23 351-373 262-284 (330)
175 PF06785 UPF0242: Uncharacteri 91.8 17 0.00036 37.3 19.0 23 418-440 198-220 (401)
176 KOG0804 Cytoplasmic Zn-finger 91.8 16 0.00034 39.0 18.1 17 385-401 432-448 (493)
177 PRK10929 putative mechanosensi 91.6 38 0.00083 41.0 31.0 32 424-455 336-367 (1109)
178 PF10498 IFT57: Intra-flagella 91.5 13 0.00028 39.2 17.5 17 353-369 335-351 (359)
179 COG2433 Uncharacterized conser 91.1 5.3 0.00012 44.1 14.3 40 234-273 422-461 (652)
180 COG4477 EzrA Negative regulato 91.0 27 0.00059 38.2 37.4 49 47-95 104-152 (570)
181 PRK11281 hypothetical protein; 91.0 45 0.00097 40.5 32.0 32 227-258 73-104 (1113)
182 PF10498 IFT57: Intra-flagella 91.0 23 0.00051 37.3 19.9 6 255-260 220-225 (359)
183 COG5185 HEC1 Protein involved 90.9 26 0.00056 37.6 30.8 18 227-244 271-288 (622)
184 PF12795 MscS_porin: Mechanose 90.9 18 0.00039 35.8 26.1 9 433-441 216-224 (240)
185 KOG4809 Rab6 GTPase-interactin 90.6 30 0.00065 37.9 24.5 59 256-314 332-390 (654)
186 PF13514 AAA_27: AAA domain 90.2 53 0.0011 40.2 33.3 16 428-443 940-955 (1111)
187 PF05557 MAD: Mitotic checkpoi 90.2 1.1 2.4E-05 51.8 9.1 57 427-488 605-666 (722)
188 PF04012 PspA_IM30: PspA/IM30 90.1 19 0.00042 34.9 26.6 6 302-307 103-108 (221)
189 PF05622 HOOK: HOOK protein; 90.0 0.09 2E-06 60.6 0.0 22 355-376 334-355 (713)
190 KOG0249 LAR-interacting protei 90.0 39 0.00084 38.2 20.6 13 530-542 453-465 (916)
191 PF10186 Atg14: UV radiation r 89.8 24 0.00053 35.6 21.6 9 454-462 214-222 (302)
192 PF05622 HOOK: HOOK protein; 89.4 0.11 2.3E-06 60.0 0.0 9 174-182 119-127 (713)
193 KOG4809 Rab6 GTPase-interactin 89.4 37 0.0008 37.2 27.6 21 228-248 332-352 (654)
194 PF14992 TMCO5: TMCO5 family 89.2 27 0.00057 35.3 17.9 22 428-450 161-182 (280)
195 KOG0288 WD40 repeat protein Ti 89.0 25 0.00054 37.1 16.6 16 475-491 173-188 (459)
196 PF09728 Taxilin: Myosin-like 88.8 31 0.00068 35.6 33.7 71 370-440 205-277 (309)
197 PF15450 DUF4631: Domain of un 88.8 40 0.00087 36.8 30.5 61 34-101 14-74 (531)
198 PF13166 AAA_13: AAA domain 88.8 51 0.0011 38.0 25.9 26 422-447 446-471 (712)
199 PF10212 TTKRSYEDQ: Predicted 88.7 42 0.0009 36.8 24.0 97 337-441 418-514 (518)
200 PF09755 DUF2046: Uncharacteri 88.5 31 0.00068 35.3 33.2 17 386-402 227-243 (310)
201 PF10226 DUF2216: Uncharacteri 88.4 23 0.0005 33.5 22.1 40 419-459 106-145 (195)
202 PF15254 CCDC14: Coiled-coil d 88.3 53 0.0011 37.6 22.9 7 486-492 657-663 (861)
203 KOG0249 LAR-interacting protei 88.3 50 0.0011 37.4 19.5 11 539-549 526-536 (916)
204 PLN02939 transferase, transfer 88.0 65 0.0014 38.3 29.0 15 385-399 328-342 (977)
205 TIGR01000 bacteriocin_acc bact 87.9 45 0.00098 36.3 25.8 26 422-447 292-317 (457)
206 COG4026 Uncharacterized protei 87.7 7.5 0.00016 37.4 11.0 15 177-191 61-78 (290)
207 PF13166 AAA_13: AAA domain 87.3 62 0.0013 37.3 28.8 26 422-447 432-457 (712)
208 PF15290 Syntaphilin: Golgi-lo 86.6 37 0.00081 34.0 15.8 16 422-437 153-168 (305)
209 PF09738 DUF2051: Double stran 86.5 23 0.0005 36.3 14.7 55 229-283 79-133 (302)
210 KOG0239 Kinesin (KAR3 subfamil 86.4 68 0.0015 36.8 22.2 49 354-402 228-276 (670)
211 TIGR02338 gimC_beta prefoldin, 86.1 21 0.00046 30.7 13.6 26 231-256 7-32 (110)
212 COG0497 RecN ATPase involved i 85.9 64 0.0014 36.0 26.7 41 236-276 159-199 (557)
213 PF09738 DUF2051: Double stran 85.6 27 0.00059 35.8 14.7 55 225-279 82-136 (302)
214 KOG0982 Centrosomal protein Nu 85.2 56 0.0012 34.8 24.1 100 303-402 310-417 (502)
215 PLN02939 transferase, transfer 85.1 92 0.002 37.1 28.3 16 363-378 327-342 (977)
216 PF04012 PspA_IM30: PspA/IM30 84.9 39 0.00085 32.8 22.3 10 292-301 53-62 (221)
217 PRK09343 prefoldin subunit bet 84.0 29 0.00063 30.5 14.0 32 227-258 7-38 (121)
218 PRK10246 exonuclease subunit S 84.0 1.1E+02 0.0024 37.2 32.9 16 422-437 861-876 (1047)
219 PF15290 Syntaphilin: Golgi-lo 83.9 50 0.0011 33.2 16.3 35 228-262 69-103 (305)
220 KOG1937 Uncharacterized conser 83.7 67 0.0015 34.5 26.0 40 224-263 228-270 (521)
221 PRK04406 hypothetical protein; 83.3 13 0.00028 29.9 8.9 50 50-99 7-56 (75)
222 PF14073 Cep57_CLD: Centrosome 83.0 42 0.00091 31.6 23.0 34 367-400 120-153 (178)
223 KOG4403 Cell surface glycoprot 82.9 70 0.0015 34.1 22.9 16 164-179 153-168 (575)
224 PRK09841 cryptic autophosphory 82.9 58 0.0013 37.8 17.8 37 241-277 260-296 (726)
225 PRK11519 tyrosine kinase; Prov 82.7 73 0.0016 37.0 18.5 32 246-277 265-296 (719)
226 KOG0982 Centrosomal protein Nu 82.5 72 0.0016 34.0 26.8 9 432-440 428-436 (502)
227 PRK03947 prefoldin subunit alp 82.3 37 0.0008 30.5 14.6 33 228-260 7-39 (140)
228 KOG0239 Kinesin (KAR3 subfamil 81.9 1E+02 0.0022 35.4 20.0 32 428-459 300-331 (670)
229 PF14992 TMCO5: TMCO5 family 81.8 62 0.0014 32.7 17.8 34 227-260 11-44 (280)
230 PF05278 PEARLI-4: Arabidopsis 81.4 62 0.0014 32.5 16.7 9 156-164 57-65 (269)
231 PRK09343 prefoldin subunit bet 81.1 38 0.00082 29.8 13.9 42 233-274 6-47 (121)
232 KOG1962 B-cell receptor-associ 81.1 42 0.00091 32.6 13.1 47 327-373 160-206 (216)
233 PF07106 TBPIP: Tat binding pr 81.0 33 0.00072 31.8 12.4 19 295-313 84-102 (169)
234 PRK02119 hypothetical protein; 80.9 11 0.00023 30.2 7.6 51 49-99 4-54 (73)
235 PF04102 SlyX: SlyX; InterPro 80.7 8.2 0.00018 30.4 6.9 50 52-101 2-51 (69)
236 PF06005 DUF904: Protein of un 80.7 27 0.00058 27.8 11.6 31 237-267 7-37 (72)
237 KOG1853 LIS1-interacting prote 80.3 64 0.0014 31.9 31.4 11 439-449 262-272 (333)
238 COG1382 GimC Prefoldin, chaper 80.0 41 0.00089 29.5 13.6 28 230-257 9-36 (119)
239 PF13863 DUF4200: Domain of un 79.8 41 0.00089 29.4 15.4 42 418-459 78-119 (126)
240 PRK02793 phi X174 lysis protei 79.6 17 0.00037 28.9 8.4 49 52-100 6-54 (72)
241 PRK03947 prefoldin subunit alp 79.4 47 0.001 29.8 14.6 25 236-260 8-32 (140)
242 PF06470 SMC_hinge: SMC protei 78.8 0.5 1.1E-05 41.0 -0.7 33 153-185 80-115 (120)
243 PF03148 Tektin: Tektin family 78.5 98 0.0021 33.0 29.0 13 239-251 135-147 (384)
244 KOG4593 Mitotic checkpoint pro 78.5 1.3E+02 0.0027 34.3 39.6 17 386-402 557-573 (716)
245 PF12777 MT: Microtubule-bindi 78.4 13 0.00027 39.1 9.5 20 37-56 12-31 (344)
246 PF04912 Dynamitin: Dynamitin 78.4 98 0.0021 33.0 20.9 21 31-51 92-112 (388)
247 KOG1937 Uncharacterized conser 78.1 1E+02 0.0023 33.1 29.4 12 166-177 171-183 (521)
248 PRK09841 cryptic autophosphory 78.0 1.1E+02 0.0024 35.5 18.0 19 266-284 271-289 (726)
249 PRK04325 hypothetical protein; 77.3 11 0.00024 30.2 6.7 46 51-96 6-51 (74)
250 PRK00736 hypothetical protein; 77.1 9.6 0.00021 30.0 6.2 46 53-98 4-49 (68)
251 TIGR02231 conserved hypothetic 76.8 34 0.00074 38.0 12.9 31 227-257 71-101 (525)
252 PRK10869 recombination and rep 76.7 1.3E+02 0.0029 33.6 26.8 18 384-401 320-337 (553)
253 TIGR01010 BexC_CtrB_KpsE polys 76.6 1E+02 0.0022 32.3 18.0 28 249-276 171-198 (362)
254 PRK00295 hypothetical protein; 76.6 12 0.00025 29.5 6.5 44 53-96 4-47 (68)
255 KOG4787 Uncharacterized conser 76.1 1.3E+02 0.0029 33.3 21.1 46 51-96 498-543 (852)
256 cd00632 Prefoldin_beta Prefold 74.7 53 0.0011 27.9 12.5 21 236-256 8-28 (105)
257 PF12252 SidE: Dot/Icm substra 73.3 2.1E+02 0.0045 34.3 20.6 22 440-461 1300-1321(1439)
258 PF10267 Tmemb_cc2: Predicted 73.3 1.4E+02 0.0029 32.0 16.2 100 271-373 214-318 (395)
259 KOG3091 Nuclear pore complex, 73.0 1.5E+02 0.0032 32.4 19.1 52 229-280 336-387 (508)
260 PF06810 Phage_GP20: Phage min 72.4 80 0.0017 29.1 14.1 23 437-459 118-140 (155)
261 TIGR02231 conserved hypothetic 72.2 51 0.0011 36.6 12.8 10 470-479 230-239 (525)
262 PF14073 Cep57_CLD: Centrosome 72.0 89 0.0019 29.4 22.9 15 365-379 139-153 (178)
263 KOG4593 Mitotic checkpoint pro 72.0 1.8E+02 0.004 33.0 33.3 12 324-335 185-196 (716)
264 PRK10698 phage shock protein P 71.7 1E+02 0.0023 30.1 26.0 8 365-372 171-178 (222)
265 PF10234 Cluap1: Clusterin-ass 71.7 1.2E+02 0.0025 30.7 19.5 10 370-379 228-237 (267)
266 PF08172 CASP_C: CASP C termin 71.3 85 0.0018 31.3 12.8 26 356-381 82-107 (248)
267 PF15294 Leu_zip: Leucine zipp 71.2 1.2E+02 0.0026 30.7 16.4 144 232-378 130-278 (278)
268 COG3074 Uncharacterized protei 71.1 48 0.001 26.0 10.7 9 383-391 62-70 (79)
269 KOG4466 Component of histone d 71.0 1.2E+02 0.0026 30.5 16.4 20 437-457 118-137 (291)
270 COG3352 FlaC Putative archaeal 71.0 53 0.0011 29.9 10.0 24 227-250 44-67 (157)
271 COG3074 Uncharacterized protei 70.8 49 0.0011 25.9 10.6 42 237-278 7-48 (79)
272 PF07794 DUF1633: Protein of u 70.7 1.6E+02 0.0036 31.9 15.1 145 194-345 578-725 (790)
273 KOG2751 Beclin-like protein [S 70.6 1.6E+02 0.0034 31.6 15.8 10 485-494 383-392 (447)
274 PF14197 Cep57_CLD_2: Centroso 70.2 52 0.0011 26.0 10.4 20 353-372 40-59 (69)
275 KOG2196 Nuclear porin [Nuclear 69.9 1.2E+02 0.0026 30.0 20.6 15 229-243 73-87 (254)
276 PF11802 CENP-K: Centromere-as 69.7 1.3E+02 0.0028 30.3 18.5 19 535-553 246-264 (268)
277 PF05266 DUF724: Protein of un 68.8 1.1E+02 0.0024 29.2 17.2 18 327-344 133-150 (190)
278 PRK10698 phage shock protein P 68.4 1.2E+02 0.0027 29.6 22.9 21 426-446 164-184 (222)
279 PF10805 DUF2730: Protein of u 67.8 67 0.0015 27.5 9.9 17 228-244 36-52 (106)
280 PRK00846 hypothetical protein; 66.8 28 0.00061 28.1 6.7 49 51-99 10-58 (77)
281 PF10212 TTKRSYEDQ: Predicted 66.8 2.1E+02 0.0045 31.6 24.3 80 320-402 422-501 (518)
282 PF15254 CCDC14: Coiled-coil d 66.7 2.5E+02 0.0054 32.5 25.4 8 441-448 596-603 (861)
283 PF12777 MT: Microtubule-bindi 66.3 1.7E+02 0.0038 30.5 23.9 42 358-399 219-260 (344)
284 PF04949 Transcrip_act: Transc 66.2 1E+02 0.0023 28.0 20.5 58 304-361 84-141 (159)
285 COG1730 GIM5 Predicted prefold 65.8 1.1E+02 0.0023 28.0 15.0 12 358-369 99-110 (145)
286 PF08826 DMPK_coil: DMPK coile 64.5 63 0.0014 24.9 10.1 40 339-378 18-57 (61)
287 KOG3809 Microtubule-binding pr 64.4 1.5E+02 0.0032 31.8 13.0 36 312-347 487-522 (583)
288 KOG2264 Exostosin EXT1L [Signa 64.4 62 0.0013 35.7 10.6 10 527-536 320-329 (907)
289 PF05335 DUF745: Protein of un 63.1 1.4E+02 0.0031 28.4 18.5 23 255-277 67-89 (188)
290 PF07111 HCR: Alpha helical co 62.3 2.9E+02 0.0062 31.7 34.4 12 189-200 98-109 (739)
291 PF03915 AIP3: Actin interacti 62.3 2.3E+02 0.005 30.6 19.7 19 226-244 150-168 (424)
292 KOG4302 Microtubule-associated 62.2 2.9E+02 0.0062 31.6 21.9 13 436-448 291-303 (660)
293 PF03962 Mnd1: Mnd1 family; I 60.4 1.6E+02 0.0034 28.1 14.9 33 228-260 63-95 (188)
294 PF06785 UPF0242: Uncharacteri 60.1 2.2E+02 0.0047 29.5 21.8 47 291-337 128-174 (401)
295 KOG4302 Microtubule-associated 59.9 3.1E+02 0.0068 31.3 27.0 13 433-445 355-367 (660)
296 KOG2077 JNK/SAPK-associated pr 59.1 2.9E+02 0.0063 30.7 18.2 24 33-56 40-63 (832)
297 TIGR02977 phageshock_pspA phag 59.0 1.8E+02 0.0039 28.3 24.9 19 244-262 34-52 (219)
298 KOG2629 Peroxisomal membrane a 58.8 2.1E+02 0.0046 29.0 13.7 26 423-448 163-188 (300)
299 PF08172 CASP_C: CASP C termin 58.3 2E+02 0.0044 28.7 13.3 20 327-346 109-128 (248)
300 COG0497 RecN ATPase involved i 58.2 3.1E+02 0.0067 30.7 26.9 17 385-401 322-338 (557)
301 TIGR03752 conj_TIGR03752 integ 57.4 1.6E+02 0.0035 32.1 12.4 43 227-269 59-101 (472)
302 COG3096 MukB Uncharacterized p 56.5 3.7E+02 0.008 31.1 29.2 9 177-185 711-719 (1480)
303 PF07445 priB_priC: Primosomal 56.5 1.7E+02 0.0038 27.3 12.7 31 417-447 141-171 (173)
304 PRK10361 DNA recombination pro 56.0 3.1E+02 0.0067 30.1 26.2 25 350-374 137-161 (475)
305 PF15397 DUF4618: Domain of un 55.8 2.3E+02 0.0049 28.5 32.5 39 421-459 200-240 (258)
306 PF07989 Microtub_assoc: Micro 55.8 1.1E+02 0.0023 24.6 9.3 21 313-333 9-29 (75)
307 PF07246 Phlebovirus_NSM: Phle 55.2 2.3E+02 0.0051 28.4 13.9 14 205-218 125-139 (264)
308 PRK00409 recombination and DNA 53.0 4.4E+02 0.0096 31.0 17.6 21 460-480 645-665 (782)
309 KOG4787 Uncharacterized conser 52.4 3.8E+02 0.0082 30.0 26.4 37 435-471 577-614 (852)
310 PF05335 DUF745: Protein of un 52.3 2.2E+02 0.0047 27.2 18.4 9 389-397 152-160 (188)
311 TIGR00293 prefoldin, archaeal 52.3 1.2E+02 0.0027 26.4 9.2 24 235-258 7-30 (126)
312 PLN03229 acetyl-coenzyme A car 52.2 4.3E+02 0.0094 30.6 22.3 16 223-238 432-447 (762)
313 PF12252 SidE: Dot/Icm substra 52.0 5E+02 0.011 31.3 24.7 22 428-449 1322-1343(1439)
314 KOG4603 TBP-1 interacting prot 51.0 2.1E+02 0.0046 26.7 14.2 6 174-179 37-42 (201)
315 PF15188 CCDC-167: Coiled-coil 50.9 82 0.0018 26.0 7.0 21 359-379 42-62 (85)
316 PF04100 Vps53_N: Vps53-like, 50.7 3.4E+02 0.0073 28.9 20.4 49 268-316 63-111 (383)
317 PLN03188 kinesin-12 family pro 50.6 5.7E+02 0.012 31.5 31.2 13 238-250 990-1002(1320)
318 PF10234 Cluap1: Clusterin-ass 49.9 2.9E+02 0.0063 27.9 19.6 6 154-159 76-81 (267)
319 PF03915 AIP3: Actin interacti 48.1 3.9E+02 0.0085 28.9 19.7 17 425-441 303-319 (424)
320 COG3206 GumC Uncharacterized p 47.8 4E+02 0.0086 28.9 23.6 40 422-462 381-420 (458)
321 PF12761 End3: Actin cytoskele 47.6 1.3E+02 0.0028 28.8 8.8 11 155-165 31-41 (195)
322 PF04728 LPP: Lipoprotein leuc 47.5 1.2E+02 0.0026 22.9 8.6 16 252-267 14-29 (56)
323 KOG3990 Uncharacterized conser 47.2 2E+02 0.0044 28.5 10.1 57 200-262 203-260 (305)
324 KOG4637 Adaptor for phosphoino 46.7 3.8E+02 0.0081 28.3 20.5 13 532-544 437-449 (464)
325 COG2900 SlyX Uncharacterized p 46.5 1E+02 0.0022 24.5 6.5 50 50-99 4-53 (72)
326 PF15358 TSKS: Testis-specific 46.1 2.1E+02 0.0045 30.5 10.6 124 273-398 108-231 (558)
327 PF06120 Phage_HK97_TLTM: Tail 45.1 3.6E+02 0.0079 27.7 20.9 6 214-219 21-26 (301)
328 PF04912 Dynamitin: Dynamitin 44.5 4.2E+02 0.009 28.2 28.5 23 224-246 91-113 (388)
329 PF07111 HCR: Alpha helical co 44.3 5.5E+02 0.012 29.5 33.3 12 436-447 590-601 (739)
330 PTZ00464 SNF-7-like protein; P 44.1 3.1E+02 0.0068 26.6 20.2 35 223-257 14-48 (211)
331 PRK13729 conjugal transfer pil 43.8 1.1E+02 0.0024 33.3 8.6 17 352-368 103-119 (475)
332 TIGR03545 conserved hypothetic 43.7 2.2E+02 0.0047 32.0 11.3 10 477-486 370-379 (555)
333 COG4717 Uncharacterized conser 43.3 6.2E+02 0.013 29.9 30.9 22 33-54 219-240 (984)
334 KOG3564 GTPase-activating prot 43.2 3E+02 0.0064 30.1 11.4 47 227-273 28-74 (604)
335 PF05700 BCAS2: Breast carcino 42.9 3.3E+02 0.0071 26.5 17.1 6 134-139 32-37 (221)
336 COG3524 KpsE Capsule polysacch 42.4 1.6E+02 0.0035 30.2 8.9 71 3-73 226-307 (372)
337 PF11570 E2R135: Coiled-coil r 42.0 2.5E+02 0.0055 25.0 14.2 18 301-318 12-29 (136)
338 TIGR03794 NHPM_micro_HlyD NHPM 41.6 4.7E+02 0.01 28.0 21.3 18 228-245 97-114 (421)
339 PF09787 Golgin_A5: Golgin sub 40.9 5.4E+02 0.012 28.5 27.3 6 281-286 233-238 (511)
340 PF06156 DUF972: Protein of un 40.9 79 0.0017 27.2 5.7 27 31-57 6-32 (107)
341 TIGR01069 mutS2 MutS2 family p 40.8 6.6E+02 0.014 29.5 17.7 28 454-481 627-654 (771)
342 KOG1850 Myosin-like coiled-coi 40.0 4.4E+02 0.0096 27.2 33.2 15 84-98 75-89 (391)
343 PRK14011 prefoldin subunit alp 39.7 2.9E+02 0.0064 25.1 13.1 32 228-259 4-35 (144)
344 TIGR02971 heterocyst_DevB ABC 39.6 4.3E+02 0.0093 27.0 19.5 22 424-445 182-203 (327)
345 PRK10803 tol-pal system protei 39.4 2.4E+02 0.0053 28.2 10.0 33 252-284 58-90 (263)
346 COG5283 Phage-related tail pro 39.1 8.2E+02 0.018 30.0 29.6 87 228-314 23-109 (1213)
347 KOG0998 Synaptic vesicle prote 38.9 70 0.0015 37.8 6.8 15 154-168 320-334 (847)
348 KOG0972 Huntingtin interacting 38.8 4.4E+02 0.0095 26.9 16.4 87 287-373 270-362 (384)
349 PF08232 Striatin: Striatin fa 38.6 2.8E+02 0.0061 24.8 9.2 57 327-383 6-69 (134)
350 cd07666 BAR_SNX7 The Bin/Amphi 37.8 4.2E+02 0.0092 26.3 27.9 20 424-443 221-240 (243)
351 COG3206 GumC Uncharacterized p 37.7 5.6E+02 0.012 27.8 27.0 30 422-451 374-403 (458)
352 TIGR00414 serS seryl-tRNA synt 37.3 2.9E+02 0.0063 29.8 10.8 25 247-271 36-60 (418)
353 PLN02678 seryl-tRNA synthetase 37.3 3.1E+02 0.0068 29.9 11.0 17 253-269 45-61 (448)
354 KOG2685 Cystoskeletal protein 37.0 5.6E+02 0.012 27.5 29.6 48 414-461 351-403 (421)
355 TIGR01069 mutS2 MutS2 family p 35.6 7.9E+02 0.017 28.9 16.1 23 71-93 142-164 (771)
356 COG5283 Phage-related tail pro 35.4 9.3E+02 0.02 29.6 28.1 69 239-307 27-95 (1213)
357 PF04880 NUDE_C: NUDE protein, 35.4 67 0.0014 30.0 4.8 10 289-298 13-22 (166)
358 PLN03229 acetyl-coenzyme A car 35.2 7.8E+02 0.017 28.6 26.7 18 431-448 715-732 (762)
359 KOG4572 Predicted DNA-binding 35.1 8E+02 0.017 28.8 24.2 24 34-57 458-481 (1424)
360 KOG2077 JNK/SAPK-associated pr 34.8 6.9E+02 0.015 28.0 15.1 17 476-492 592-608 (832)
361 COG1730 GIM5 Predicted prefold 34.6 3.6E+02 0.0078 24.6 14.9 26 228-253 7-32 (145)
362 PF15188 CCDC-167: Coiled-coil 34.4 2E+02 0.0044 23.7 6.8 66 34-103 6-71 (85)
363 PRK15178 Vi polysaccharide exp 34.3 6.4E+02 0.014 27.4 17.1 143 243-385 225-383 (434)
364 PF04880 NUDE_C: NUDE protein, 34.0 71 0.0015 29.8 4.7 14 389-402 32-45 (166)
365 KOG4657 Uncharacterized conser 33.8 4.7E+02 0.01 25.7 17.6 122 316-449 35-156 (246)
366 PF06428 Sec2p: GDP/GTP exchan 33.7 76 0.0016 27.0 4.5 12 306-317 17-28 (100)
367 PRK10476 multidrug resistance 33.4 5.6E+02 0.012 26.5 17.8 125 293-433 82-209 (346)
368 PRK10636 putative ABC transpor 33.2 3.1E+02 0.0066 31.4 10.8 27 373-399 604-630 (638)
369 TIGR03545 conserved hypothetic 33.1 6.4E+02 0.014 28.4 12.9 10 454-463 331-340 (555)
370 KOG4460 Nuclear pore complex, 33.1 7.3E+02 0.016 27.7 20.2 157 282-445 573-740 (741)
371 PF11180 DUF2968: Protein of u 33.0 4.4E+02 0.0096 25.2 16.2 12 174-185 51-62 (192)
372 PF03148 Tektin: Tektin family 32.9 6.2E+02 0.014 26.9 35.0 34 414-447 324-357 (384)
373 PRK05431 seryl-tRNA synthetase 32.7 3.9E+02 0.0084 28.9 10.9 19 253-271 40-58 (425)
374 PF14257 DUF4349: Domain of un 32.7 1.3E+02 0.0028 30.1 6.8 8 333-340 170-177 (262)
375 PRK12704 phosphodiesterase; Pr 32.3 7.5E+02 0.016 27.6 22.2 144 239-382 44-191 (520)
376 PF03961 DUF342: Protein of un 31.9 2.6E+02 0.0057 30.3 9.6 80 285-365 329-408 (451)
377 KOG3478 Prefoldin subunit 6, K 31.9 3.4E+02 0.0074 23.5 13.8 89 302-390 3-113 (120)
378 PF03961 DUF342: Protein of un 31.8 2.7E+02 0.0059 30.2 9.7 78 238-316 331-408 (451)
379 KOG4687 Uncharacterized coiled 31.7 5.5E+02 0.012 25.9 27.3 220 227-446 9-257 (389)
380 PF13874 Nup54: Nucleoporin co 31.6 3.8E+02 0.0083 24.0 9.5 106 271-376 32-140 (141)
381 PF12808 Mto2_bdg: Micro-tubul 31.5 1.7E+02 0.0037 21.8 5.4 46 8-54 5-50 (52)
382 PF06156 DUF972: Protein of un 31.5 3.4E+02 0.0073 23.3 8.6 54 230-283 4-57 (107)
383 KOG4403 Cell surface glycoprot 31.4 6.9E+02 0.015 26.9 20.3 159 230-394 241-424 (575)
384 TIGR00414 serS seryl-tRNA synt 31.2 5.5E+02 0.012 27.7 11.7 96 263-358 3-102 (418)
385 KOG1103 Predicted coiled-coil 31.2 6.3E+02 0.014 26.4 16.4 149 232-380 144-293 (561)
386 KOG4687 Uncharacterized coiled 31.2 5.6E+02 0.012 25.8 22.4 185 241-430 9-204 (389)
387 PRK10636 putative ABC transpor 31.1 3.4E+02 0.0074 31.0 10.7 76 286-361 552-634 (638)
388 cd00890 Prefoldin Prefoldin is 31.1 3.5E+02 0.0075 23.3 12.8 88 278-365 1-127 (129)
389 PF08581 Tup_N: Tup N-terminal 30.7 2.9E+02 0.0063 22.4 11.9 74 323-399 2-75 (79)
390 PF15358 TSKS: Testis-specific 30.4 7E+02 0.015 26.7 22.2 266 201-471 67-404 (558)
391 PRK05431 seryl-tRNA synthetase 30.2 4.5E+02 0.0098 28.4 10.9 73 283-355 28-103 (425)
392 cd00584 Prefoldin_alpha Prefol 29.8 3.8E+02 0.0082 23.4 13.2 88 229-316 1-127 (129)
393 PF06428 Sec2p: GDP/GTP exchan 29.8 1E+02 0.0023 26.2 4.7 78 297-374 1-79 (100)
394 PLN02678 seryl-tRNA synthetase 29.5 4.4E+02 0.0096 28.7 10.6 73 283-355 33-108 (448)
395 PF14712 Snapin_Pallidin: Snap 28.9 3.2E+02 0.0069 22.3 12.0 81 278-359 9-91 (92)
396 PF14257 DUF4349: Domain of un 28.8 2.8E+02 0.006 27.6 8.5 64 293-356 128-193 (262)
397 TIGR02449 conserved hypothetic 28.3 2.9E+02 0.0063 21.6 8.9 63 228-290 1-63 (65)
398 PF09787 Golgin_A5: Golgin sub 28.0 8.6E+02 0.019 26.9 28.5 217 227-447 187-418 (511)
399 PF15450 DUF4631: Domain of un 28.0 8.6E+02 0.019 26.9 33.0 225 230-454 196-438 (531)
400 PF05531 NPV_P10: Nucleopolyhe 27.9 3.2E+02 0.007 22.0 7.6 57 243-299 6-65 (75)
401 PF04949 Transcrip_act: Transc 27.7 4.8E+02 0.01 23.9 18.3 115 254-368 30-148 (159)
402 cd07648 F-BAR_FCHO The F-BAR ( 27.4 6.2E+02 0.013 25.1 30.1 222 227-463 22-259 (261)
403 smart00502 BBC B-Box C-termina 27.4 3.8E+02 0.0082 22.6 16.2 99 237-335 3-103 (127)
404 TIGR03794 NHPM_micro_HlyD NHPM 27.4 7.8E+02 0.017 26.2 21.4 151 286-445 92-251 (421)
405 TIGR02971 heterocyst_DevB ABC 27.2 6.8E+02 0.015 25.5 20.1 140 228-370 56-203 (327)
406 PF04977 DivIC: Septum formati 27.2 1.3E+02 0.0028 23.6 4.7 53 415-467 18-71 (80)
407 PHA03011 hypothetical protein; 27.0 3.9E+02 0.0084 22.6 8.1 63 247-309 56-118 (120)
408 PF02050 FliJ: Flagellar FliJ 26.8 3.7E+02 0.008 22.3 17.3 109 286-394 1-114 (123)
409 TIGR03495 phage_LysB phage lys 26.7 4.7E+02 0.01 23.5 11.8 77 291-367 20-96 (135)
410 PRK12704 phosphodiesterase; Pr 26.4 9.3E+02 0.02 26.8 24.6 158 232-389 29-191 (520)
411 PF13747 DUF4164: Domain of un 26.3 3.7E+02 0.0081 22.2 12.7 82 315-400 5-86 (89)
412 cd00584 Prefoldin_alpha Prefol 26.2 4.4E+02 0.0095 22.9 13.2 88 243-330 1-127 (129)
413 PF08657 DASH_Spc34: DASH comp 26.2 2.8E+02 0.006 27.9 7.7 66 252-317 177-259 (259)
414 PF02050 FliJ: Flagellar FliJ 26.2 3.8E+02 0.0082 22.2 17.8 111 230-340 1-116 (123)
415 TIGR00998 8a0101 efflux pump m 26.0 7.1E+02 0.015 25.3 18.4 127 307-433 76-205 (334)
416 PRK13182 racA polar chromosome 25.9 5.6E+02 0.012 24.1 10.0 64 281-346 83-146 (175)
417 PF13874 Nup54: Nucleoporin co 25.9 4.9E+02 0.011 23.4 9.5 94 285-378 32-125 (141)
418 PF08581 Tup_N: Tup N-terminal 25.8 3.6E+02 0.0078 21.9 12.2 75 259-336 1-75 (79)
419 PF08702 Fib_alpha: Fibrinogen 25.8 5.1E+02 0.011 23.5 16.1 109 281-391 27-135 (146)
420 PF13747 DUF4164: Domain of un 25.7 3.9E+02 0.0083 22.1 12.5 81 294-378 5-85 (89)
421 PF10211 Ax_dynein_light: Axon 25.4 5.9E+02 0.013 24.2 15.9 102 236-337 86-189 (189)
422 PLN02320 seryl-tRNA synthetase 25.4 5.3E+02 0.011 28.6 10.3 73 241-313 93-167 (502)
423 KOG3850 Predicted membrane pro 25.4 8.4E+02 0.018 25.9 18.8 128 201-352 232-373 (455)
424 KOG4677 Golgi integral membran 25.1 9.1E+02 0.02 26.2 27.9 239 230-468 220-485 (554)
425 PRK13169 DNA replication intia 25.0 2E+02 0.0044 24.9 5.7 55 2-61 3-57 (110)
426 PF14712 Snapin_Pallidin: Snap 24.9 3.8E+02 0.0083 21.8 12.2 86 281-367 5-92 (92)
427 PF06476 DUF1090: Protein of u 24.8 4E+02 0.0087 23.2 7.6 85 6-92 23-113 (115)
428 PF07989 Microtub_assoc: Micro 24.7 3.7E+02 0.0079 21.5 9.7 72 292-363 2-74 (75)
429 cd07667 BAR_SNX30 The Bin/Amph 24.7 7E+02 0.015 24.8 25.4 159 227-389 51-210 (240)
430 PF08657 DASH_Spc34: DASH comp 24.6 2.8E+02 0.0062 27.8 7.5 73 231-303 177-259 (259)
431 PLN02320 seryl-tRNA synthetase 24.6 4.5E+02 0.0097 29.2 9.6 71 283-358 93-163 (502)
432 PF05700 BCAS2: Breast carcino 24.6 6.6E+02 0.014 24.4 16.5 112 257-371 99-221 (221)
433 PRK15178 Vi polysaccharide exp 24.5 9.3E+02 0.02 26.2 19.1 153 229-383 225-385 (434)
434 PF13805 Pil1: Eisosome compon 24.5 7.5E+02 0.016 25.0 20.6 137 312-462 97-243 (271)
435 KOG3759 Uncharacterized RUN do 24.4 9.5E+02 0.02 26.2 13.8 182 291-475 65-271 (621)
436 KOG4196 bZIP transcription fac 24.4 4E+02 0.0088 23.7 7.3 68 7-74 47-115 (135)
437 PF01519 DUF16: Protein of unk 24.4 4.5E+02 0.0097 22.4 8.7 62 299-360 39-102 (102)
438 PF15035 Rootletin: Ciliary ro 24.2 6.2E+02 0.013 23.9 22.0 155 270-433 3-178 (182)
439 KOG3850 Predicted membrane pro 23.8 9E+02 0.019 25.7 17.1 105 278-385 262-378 (455)
440 PF03999 MAP65_ASE1: Microtubu 23.8 26 0.00057 39.8 0.0 202 239-440 82-298 (619)
441 TIGR02449 conserved hypothetic 23.6 3.6E+02 0.0078 21.0 9.0 63 299-361 2-64 (65)
442 KOG4677 Golgi integral membran 23.3 9.9E+02 0.021 26.0 27.0 226 225-457 184-439 (554)
443 PF05008 V-SNARE: Vesicle tran 23.0 3.8E+02 0.0082 21.1 8.6 78 299-378 1-79 (79)
444 PRK15396 murein lipoprotein; P 23.0 4.1E+02 0.0089 21.5 7.7 47 326-372 26-72 (78)
445 PF10267 Tmemb_cc2: Predicted 22.9 9.6E+02 0.021 25.7 28.9 261 35-345 6-318 (395)
446 PF11180 DUF2968: Protein of u 22.8 6.8E+02 0.015 23.9 15.9 100 265-364 87-186 (192)
447 PF14193 DUF4315: Domain of un 22.8 2.8E+02 0.006 22.8 5.7 35 368-402 2-36 (83)
448 KOG0244 Kinesin-like protein [ 22.7 1.3E+03 0.029 27.4 16.9 152 248-399 467-618 (913)
449 COG4694 Uncharacterized protei 22.7 1.1E+03 0.024 26.5 14.8 101 233-334 391-496 (758)
450 PF12126 DUF3583: Protein of u 22.6 8E+02 0.017 25.1 10.0 70 31-100 22-96 (324)
451 PF02388 FemAB: FemAB family; 22.6 4.7E+02 0.01 28.0 9.3 58 289-350 241-298 (406)
452 cd07664 BAR_SNX2 The Bin/Amphi 22.5 7.5E+02 0.016 24.4 24.3 183 257-446 3-191 (234)
453 PF08232 Striatin: Striatin fa 22.5 5.6E+02 0.012 22.9 9.6 59 344-402 9-67 (134)
454 COG4717 Uncharacterized conser 22.3 1.4E+03 0.029 27.3 32.5 222 225-449 555-853 (984)
455 PF06632 XRCC4: DNA double-str 22.3 9.2E+02 0.02 25.3 14.8 88 260-347 128-216 (342)
456 PF15456 Uds1: Up-regulated Du 22.1 5.5E+02 0.012 22.7 13.9 90 227-317 22-122 (124)
457 PF11570 E2R135: Coiled-coil r 22.0 5.7E+02 0.012 22.8 15.4 119 243-363 3-136 (136)
458 KOG4460 Nuclear pore complex, 22.0 1.1E+03 0.025 26.3 22.6 167 264-437 561-739 (741)
459 PF07794 DUF1633: Protein of u 21.8 1.1E+03 0.024 26.0 18.2 181 304-501 597-777 (790)
460 PF02388 FemAB: FemAB family; 21.8 5E+02 0.011 27.8 9.3 58 282-343 241-298 (406)
461 PF15233 SYCE1: Synaptonemal c 21.6 5.9E+02 0.013 22.7 13.9 99 288-386 4-108 (134)
462 KOG3433 Protein involved in me 21.6 7E+02 0.015 23.7 12.5 87 313-399 76-162 (203)
463 PRK14011 prefoldin subunit alp 21.2 6.3E+02 0.014 23.0 14.9 89 227-315 3-134 (144)
464 PF01502 PRA-CH: Phosphoribosy 21.2 36 0.00078 27.3 0.3 13 538-550 17-29 (75)
465 KOG3433 Protein involved in me 21.2 7.2E+02 0.016 23.6 12.8 90 241-330 74-163 (203)
466 PF07058 Myosin_HC-like: Myosi 21.1 9.2E+02 0.02 24.8 22.3 201 327-543 2-232 (351)
467 PF10368 YkyA: Putative cell-w 20.9 7.5E+02 0.016 23.8 20.8 183 214-400 7-197 (204)
468 PF09486 HrpB7: Bacterial type 20.8 6.8E+02 0.015 23.2 20.1 128 313-445 3-138 (158)
469 PF05103 DivIVA: DivIVA protei 20.7 73 0.0016 27.9 2.3 105 279-383 21-130 (131)
470 KOG2010 Double stranded RNA bi 20.7 9.6E+02 0.021 24.9 11.5 99 280-378 108-207 (405)
471 PHA03011 hypothetical protein; 20.4 5.3E+02 0.012 21.8 8.6 60 262-321 57-116 (120)
472 PF05531 NPV_P10: Nucleopolyhe 20.3 4.6E+02 0.01 21.1 7.5 57 299-355 6-65 (75)
473 PRK11020 hypothetical protein; 20.1 5.8E+02 0.013 22.2 7.6 47 224-270 2-53 (118)
474 PF05791 Bacillus_HBL: Bacillu 20.1 7.3E+02 0.016 23.3 14.4 112 229-343 68-181 (184)
No 1
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=100.00 E-value=3.3e-45 Score=404.35 Aligned_cols=455 Identities=46% Similarity=0.600 Sum_probs=326.3
Q ss_pred CchHHHHHHHHHHHHHHHhcCCCCCCCC-----------------------hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008764 1 MKLEFESRLLELQSKAETAKSEPSYHMD-----------------------PDLFEKLEFLEKENSALKMELLIQSEELE 57 (554)
Q Consensus 1 ~~~~le~~~~~~~~~~~~~~~~~~~~~~-----------------------~~l~~rl~~~eke~~~l~~el~~l~~el~ 57 (554)
+|.+||.+|.++.++|..+.++++++++ .+|+.|++++++++..|+|+++.+.++|+
T Consensus 86 ~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 86 IKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999997776 57999999999999999999999999999
Q ss_pred HHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCccc------------------ccc----ccccCc
Q 008764 58 IRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTND------------------HKS----AAASSN 115 (554)
Q Consensus 58 ~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~~~~~~------------------~~~----~~~~~~ 115 (554)
+++.|+++..++++.+++||+|.+++|++|||+|||||.++||++|||. .|. +.++++
T Consensus 166 ir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~ 245 (769)
T PF05911_consen 166 IRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSP 245 (769)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999882 111 121222
Q ss_pred cccc---ccccch---hhhhhHHHHHHh-------------------------hhhhc----------------------
Q 008764 116 CAES---LVDSQS---DSWERLNAVEMD-------------------------IRKMG---------------------- 142 (554)
Q Consensus 116 ~~~~---~~~~~~---~~g~rl~~ve~~-------------------------~~K~~---------------------- 142 (554)
+..+ +..... -+..||+.||++ ++|++
T Consensus 246 ~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~~s~~~ 325 (769)
T PF05911_consen 246 HDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELSSSQNT 325 (769)
T ss_pred ccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC
Confidence 2111 111111 236777777652 11210
Q ss_pred ---------CCCCCCCCCCchhhHHHhhhhhhhhccccccCCCce--eccCchhhcchhhhhhhceeeecCCCCCc--cc
Q 008764 143 ---------GTEPNMSEPSCSDSWASALIAELDQFKNEKAVNRNL--SASSPEIDLMDDFLEMEQLAAMPNNKSGK--HV 209 (554)
Q Consensus 143 ---------~~~~~~~~~~~~~~~a~~li~~~~~~~~~~~~g~~~--v~~~~~~~l~~~~~emerlvtl~~t~~G~--~~ 209 (554)
+..+.++.++|+++||++||++++||++.+..|+.. .+.+.+++|||||+||||||++|....+. +.
T Consensus 326 ~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~~~~~~ 405 (769)
T PF05911_consen 326 SNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSSPSSCS 405 (769)
T ss_pred CCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 012246678999999999999999999888777655 56667889999999999999998654433 33
Q ss_pred cCCcccCCCc------------------ch-hhhHHH---------HHHHHHHHHHHHHHHHH-----------------
Q 008764 210 ESGNVTTQST------------------LA-ESSLRA---------ELEAMIHRTAELEQKLE----------------- 244 (554)
Q Consensus 210 ~sG~~tGG~~------------------~~-~~~l~~---------ei~~l~~el~eLe~~l~----------------- 244 (554)
++...+.... +. ..|+.. .+..+..-+..++..+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~~~~~~ 485 (769)
T PF05911_consen 406 SSEVDSDSSVTLESSSKRESVLESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNCDDDSEEYES 485 (769)
T ss_pred CccccccccccccccccccccccchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccccccccccchhhh
Confidence 2222111100 00 011111 11111111111111111
Q ss_pred --------------------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-----------------H
Q 008764 245 --------------------RMDAEKVDLE-------EKLDKMDAEKAELEEKLEQMDAEKA-----------------E 280 (554)
Q Consensus 245 --------------------~le~ei~eLe-------~~l~~l~~e~~~l~~~ie~l~~el~-----------------~ 280 (554)
.+..++.++. ..+..+.....++...++++..-+. +
T Consensus 486 ~~~sL~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sE 565 (769)
T PF05911_consen 486 MEASLVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSE 565 (769)
T ss_pred hhhhHHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 0011111111 1111222223333344444433211 1
Q ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 281 LEEK--------------LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE 346 (554)
Q Consensus 281 ~e~e--------------l~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~ 346 (554)
++.. ..........+..+++.++.++..++..+..+..+++..+.++.+.+..+..++.++..+++
T Consensus 566 IK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 566 IKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11223455678888999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764 347 SKRIVESNVSS--------------MEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKS 412 (554)
Q Consensus 347 ~~~~le~~L~~--------------le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~ 412 (554)
....++.++.. ++.++..+..++..|+.++.+++..+.++..+|.+++.++.+...+...+...
T Consensus 646 S~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~-- 723 (769)
T PF05911_consen 646 SNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLA-- 723 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcc--
Confidence 76665555544 48889999999999999999999999999999999999999998754332222
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc
Q 008764 413 NAEVKIKQE-DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDT 457 (554)
Q Consensus 413 ~~~lk~~qe-el~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~ 457 (554)
..+++.+++ +|+.|++||++||+||.+||+||++|+|+.+|++|+
T Consensus 724 ~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~~~d~~~ds 769 (769)
T PF05911_consen 724 NEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLATPEDFLLDS 769 (769)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccC
Confidence 666777777 999999999999999999999999999999999875
No 2
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.4e-27 Score=260.03 Aligned_cols=367 Identities=18% Similarity=0.221 Sum_probs=244.0
Q ss_pred HHhhc-CCcc--ccccccccCcccccccccch------hhhhhHHH--HHHh--------------------hhhhcCCC
Q 008764 97 MACRA-SSTN--DHKSAAASSNCAESLVDSQS------DSWERLNA--VEMD--------------------IRKMGGTE 145 (554)
Q Consensus 97 ~~~k~-~~~~--~~~~~~~~~~~~~~~~~~~~------~~g~rl~~--ve~~--------------------~~K~~~~~ 145 (554)
+.+.| .|.| |++.|.+++..+.+|.|... .+|||||+ |+|+ ++||.++.
T Consensus 505 ~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~ 584 (1174)
T KOG0933|consen 505 YEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFV 584 (1174)
T ss_pred cccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhhcc
Confidence 44444 5554 66778888888878866544 35999985 4552 46887665
Q ss_pred CCCCC-------CCchhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCc
Q 008764 146 PNMSE-------PSCSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGN 213 (554)
Q Consensus 146 ~~~~~-------~~~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~ 213 (554)
.++.. .+...-||.+||.|++.+.+ .|+||+++||+++++ .+.++...|+|.||| +|| |+|+|+
T Consensus 585 ~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl----~GDV~dP~Gt 660 (1174)
T KOG0933|consen 585 LSPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTL----EGDVYDPSGT 660 (1174)
T ss_pred CCHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeee----cCceeCCCCc
Confidence 54332 24456799999999999999 999999999999999 778888889999999 999 999999
Q ss_pred ccCCCcchhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-------------------HHH
Q 008764 214 VTTQSTLAESSLR----------AELEAMIHRTAELEQKLERMDAEK---VDLEEKLD-------------------KMD 261 (554)
Q Consensus 214 ~tGG~~~~~~~l~----------~ei~~l~~el~eLe~~l~~le~ei---~eLe~~l~-------------------~l~ 261 (554)
+|||+++....+. .+++..+.++..++.+|+.++..- ..++.++. .+.
T Consensus 661 lTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~ 740 (1174)
T KOG0933|consen 661 LTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLL 740 (1174)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHH
Confidence 9999987644332 333333444444444433332211 11111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 262 AEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKM----EAEKAELEMALAKSQDSVEASELQLREATMQLEEL 337 (554)
Q Consensus 262 ~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~l----e~eleele~el~~l~~el~~~e~~i~ele~ele~l 337 (554)
.++..+...+.+...++.+...-+..+..++..+++.+.+. +..+.+++.++..+...+++....+..-+...+.+
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l 820 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERL 820 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334444444445555555555566666666665553 34456666677666666666666666666677777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Q 008764 338 QRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVE---------LQQ 408 (554)
Q Consensus 338 ~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~---------~~~ 408 (554)
+.+++.++.++...+.++..+...+..+..++..+...+......+......+......+.....++. ...
T Consensus 821 ~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e 900 (1174)
T KOG0933|consen 821 QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSE 900 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Confidence 77777777777666666666666666666666666666665555555555444444444433332221 112
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCCccccccCc
Q 008764 409 IAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAA 467 (554)
Q Consensus 409 ~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~~~~~~~ 467 (554)
.......++.+..++......-+.|.+.+..+.+...|+......|+..++.|||.+..
T Consensus 901 ~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~ 959 (1174)
T KOG0933|consen 901 KSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYD 959 (1174)
T ss_pred hhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCC
Confidence 34455667777778999999999999999999999999999999999999999998763
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.90 E-value=1.4e-19 Score=215.57 Aligned_cols=108 Identities=23% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCchhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcchhhh-
Q 008764 151 PSCSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLAESS- 224 (554)
Q Consensus 151 ~~~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~~~~- 224 (554)
.+++.++|+++|.|||.|.+ .++||+|+||++++. .++..+...-|+||| +|+ +.++|+||||+......
T Consensus 588 ~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~~~~riVTl----~G~~~~~~G~~tGG~~~~~~~~ 663 (1163)
T COG1196 588 APGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRIVTL----DGDLVEPSGSITGGSRNKRSSL 663 (1163)
T ss_pred ccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHHHHHhcCCCceEEec----CCcEEeCCeeeecCCccccchh
Confidence 36678999999999999999 999999999999998 444333222399999 999 99999999996543222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 225 -LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA 262 (554)
Q Consensus 225 -l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~ 262 (554)
...++..+..++..+...+.....++..+...+..+..
T Consensus 664 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1163)
T COG1196 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLED 702 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11133344444444444444444444443333333333
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.88 E-value=1.4e-18 Score=208.75 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=64.4
Q ss_pred CchhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCCcch-h---
Q 008764 152 SCSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA-E--- 222 (554)
Q Consensus 152 ~~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~-~--- 222 (554)
.+..+||.++|.|++.|.+ .++||+++||++++. .+..++ |+||+ +|+ |+++|+||||+... .
T Consensus 596 ~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a~~~~~~~----~~vTl----dG~~~~~~G~~tgG~~~~~~~~~ 667 (1164)
T TIGR02169 596 DGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKY----RMVTL----EGELFEKSGAMTGGSRAPRGGIL 667 (1164)
T ss_pred CCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHHHHHhcCC----cEEEe----CceeEcCCcCccCCCCCCCCCcc
Confidence 4567899999999999998 899999999999988 443356 89999 999 99999999997321 1
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 223 --SSLRAELEAMIHRTAELEQKLERMDAEK 250 (554)
Q Consensus 223 --~~l~~ei~~l~~el~eLe~~l~~le~ei 250 (554)
.+...++..+..++..+...+..+...+
T Consensus 668 ~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~ 697 (1164)
T TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSEL 697 (1164)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1113444444444444444444443333
No 5
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.6e-18 Score=184.26 Aligned_cols=344 Identities=15% Similarity=0.178 Sum_probs=224.9
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCcc--
Q 008764 28 DPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASSTN-- 105 (554)
Q Consensus 28 ~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~~~~~-- 105 (554)
.....+++..++..+.+.++.++.+..+......+++........+=.+-......|+.++....+....++...+.+
T Consensus 427 l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~ 506 (1200)
T KOG0964|consen 427 LKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVA 506 (1200)
T ss_pred HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 345556777777788888888888888777778888777777766666666666666766666555554444443321
Q ss_pred -c---ccc----ccccCcc-----cccccccch-----hhhhhHH--HHHHh---------hhhhcC-------------
Q 008764 106 -D---HKS----AAASSNC-----AESLVDSQS-----DSWERLN--AVEMD---------IRKMGG------------- 143 (554)
Q Consensus 106 -~---~~~----~~~~~~~-----~~~~~~~~~-----~~g~rl~--~ve~~---------~~K~~~------------- 143 (554)
+ ++. .++-++| +..||+.+- -+|.+|| +|++| ++++..
T Consensus 507 nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~ 586 (1200)
T KOG0964|consen 507 NGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKA 586 (1200)
T ss_pred hhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCch
Confidence 1 111 1222222 445566544 2589998 46654 233322
Q ss_pred CCCCCCCCCchhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcchhhhhhhceeeecCCCCCc-cccCCcccCCC
Q 008764 144 TEPNMSEPSCSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMDDFLEMEQLAAMPNNKSGK-HVESGNVTTQS 218 (554)
Q Consensus 144 ~~~~~~~~~~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~~~~emerlvtl~~t~~G~-~~~sG~~tGG~ 218 (554)
++......+.+. .-+..|.|+|+|.+ .+|||+|+||.+++. .+...| .| -++|| +|| ++..|+||||+
T Consensus 587 r~v~yp~~sdai-Pli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~-~l-n~ITl----~GDqvskkG~lTgGy 659 (1200)
T KOG0964|consen 587 RDVEYPKDSDAI-PLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKH-EL-NCITL----SGDQVSKKGVLTGGY 659 (1200)
T ss_pred hhccCCCCCCcc-chHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhc-CC-CeEEe----ccceecccCCccccc
Confidence 111111112233 23356779999999 999999999999999 444433 00 45555 999 99999999999
Q ss_pred cchhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 219 TLAES----------SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKM 288 (554)
Q Consensus 219 ~~~~~----------~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l 288 (554)
.+... ....++..+++.+..++..+.....+|..+...+++...........+..+..++..+..+...+
T Consensus 660 ~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v 739 (1200)
T KOG0964|consen 660 EDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRV 739 (1200)
T ss_pred hhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 86521 22356777777777777777777777777888888888887777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008764 289 DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVE---------ASELQLREATMQLEELQRELNLVNESKRIVESNVSSME 359 (554)
Q Consensus 289 ~~kl~~Le~ele~le~eleele~el~~l~~el~---------~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le 359 (554)
...+.-....|+.+...+..++.....++.++. .....+..+..++..+..++..+....-.++.....++
T Consensus 740 ~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le 819 (1200)
T KOG0964|consen 740 QESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALE 819 (1200)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777776666665543 22355666777777777777766666555666666666
Q ss_pred HHHH-HHHHHHHHHHHHHHH
Q 008764 360 MEAQ-TMTAKINSLEEEVEM 378 (554)
Q Consensus 360 ~ei~-~l~~~i~~Le~el~~ 378 (554)
..+. .+..++..|+.++.+
T Consensus 820 ~~l~~kL~~r~~~l~~ei~~ 839 (1200)
T KOG0964|consen 820 ANLNTKLYKRVNELEQEIGD 839 (1200)
T ss_pred HHHHHHHHhhhhHHHHHhhh
Confidence 6553 466666666555544
No 6
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.5e-15 Score=169.45 Aligned_cols=243 Identities=20% Similarity=0.300 Sum_probs=128.6
Q ss_pred CchhhHHHhhhhhh-hhccc--cccCCCceeccCchh----hcch-h-hhhhhceeeecCCCCCc-cccCCcccCCCcch
Q 008764 152 SCSDSWASALIAEL-DQFKN--EKAVNRNLSASSPEI----DLMD-D-FLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA 221 (554)
Q Consensus 152 ~~~~~~a~~li~~~-~~~~~--~~~~g~~~v~~~~~~----~l~~-~-~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~ 221 (554)
+-.+..-.+||.|. +.|++ ++++++|+||++++. .|+. + | |+||| +|. |++||+||||+...
T Consensus 690 penvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~----RVvTL----~G~lIe~SGtmtGGG~~v 761 (1293)
T KOG0996|consen 690 PENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRW----RVVTL----DGSLIEKSGTMTGGGKKV 761 (1293)
T ss_pred CCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCce----EEEEe----cceeecccccccCCCCcC
Confidence 33456778999997 99999 889999999999997 4533 3 8 99999 999 99999999997532
Q ss_pred -----h-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 222 -----E-------------SSLRAELEAMIHRTAELEQKLERMDAEK-------VDLEEKLDKMDAEKAELEEKLEQMDA 276 (554)
Q Consensus 222 -----~-------------~~l~~ei~~l~~el~eLe~~l~~le~ei-------~eLe~~l~~l~~e~~~l~~~ie~l~~ 276 (554)
. ..+..++..+......+..++..++..+ ..++..+..+......+...+..+..
T Consensus 762 ~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~ 841 (1293)
T KOG0996|consen 762 KGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLES 841 (1293)
T ss_pred CCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1122333333333333333333333333 33334344444444444444444444
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 008764 277 EKAELEEKLEKM---DAEKAKLEEKIEKMEAEKAELE------MALAKSQDSVEA--------SELQLREATMQLEELQR 339 (554)
Q Consensus 277 el~~~e~el~~l---~~kl~~Le~ele~le~eleele------~el~~l~~el~~--------~e~~i~ele~ele~l~~ 339 (554)
.+..++..+... ...+..+++.++.++.+++++. ..+..++..+.. .+..+..+..+++.+..
T Consensus 842 ~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~ 921 (1293)
T KOG0996|consen 842 QIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEA 921 (1293)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHH
Confidence 444444432211 1222333344444444444441 333333333322 12333444444444444
Q ss_pred HHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 340 ELNLVNES-------KRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 340 el~~l~~~-------~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
++..+... +..++..+..++.++..+..+++.|..++...+....+++..+++...-+..++.
T Consensus 922 ~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~ 991 (1293)
T KOG0996|consen 922 DIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKK 991 (1293)
T ss_pred HHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444332 2344555555555666666666666655555555555555555555555555544
No 7
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=5.4e-15 Score=163.98 Aligned_cols=278 Identities=18% Similarity=0.231 Sum_probs=167.0
Q ss_pred hhHHHhhhhhhhhccc--cccCCCceeccCchh--hcch----hhhhhhceeeecCCCCCc-cccCCcccCCCcchhhhH
Q 008764 155 DSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLMD----DFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLAESSL 225 (554)
Q Consensus 155 ~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~~----~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~~~~l 225 (554)
..++.+.|.|+++|++ .|+||+++||+++++ ++.. .| ++||| ||. |..+|.||||+.+.. |.
T Consensus 580 ~rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~----k~val----dGtl~~ksGlmsGG~s~~~-wd 650 (1141)
T KOG0018|consen 580 VRLVIDVINYEPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRF----KVVAL----DGTLIHKSGLMSGGSSGAK-WD 650 (1141)
T ss_pred eEEEEEecCCCHHHHHHHHHHhccceecCCHHHHHHhhhcccccc----eEEEe----eeeEEeccceecCCccCCC-cC
Confidence 5688899999999999 999999999999998 4422 36 89999 999 999999999998855 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 226 RAELEAMIHRTAELEQKLERMD----------AEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKL 295 (554)
Q Consensus 226 ~~ei~~l~~el~eLe~~l~~le----------~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~L 295 (554)
..+++.|......|..+|..+. ..+..+++.+..+..++..+...+.....++...+..+..+..++..+
T Consensus 651 ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i 730 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEI 730 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 8888888887777776666553 333445555555555555555556666666666666666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008764 296 EEKIEKMEAEKAELEMALAKSQDSVEASE-----LQLR---------EATMQLEELQRELNLVNESKRIVESNVSSMEME 361 (554)
Q Consensus 296 e~ele~le~eleele~el~~l~~el~~~e-----~~i~---------ele~ele~l~~el~~l~~~~~~le~~L~~le~e 361 (554)
.+++...+..+.+|+..+..++..+...- -.|. +...+..+++.++..+...+.-. .+ ......
T Consensus 731 ~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe-~~-~d~~~~ 808 (1141)
T KOG0018|consen 731 KRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFE-KQ-KDTQRR 808 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhe-ec-ccHHHH
Confidence 88888888888888888888777664220 0011 11222233444444443332111 11 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 362 AQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLG 441 (554)
Q Consensus 362 i~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~ 441 (554)
+...+..+..++.+++........+...+..+ .+++... .+.......++......+..+...+..+...|..++
T Consensus 809 ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~e 883 (1141)
T KOG0018|consen 809 VERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKN----KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIE 883 (1141)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44444444444444444444333334334433 3333211 112233444444444445555555555555555555
Q ss_pred HHHHHhh
Q 008764 442 KQLKSLA 448 (554)
Q Consensus 442 ~ql~~L~ 448 (554)
..+..+.
T Consensus 884 s~ie~~~ 890 (1141)
T KOG0018|consen 884 SKIERKE 890 (1141)
T ss_pred hHHHHHH
Confidence 5544443
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.59 E-value=1.4e-10 Score=139.84 Aligned_cols=107 Identities=18% Similarity=0.274 Sum_probs=64.4
Q ss_pred chhhHHHhhhhhhhhccc--cccCCCceeccCchh--hcc----hhhhhhhceeeecCCCCCc-cccCCcccCCCcch--
Q 008764 153 CSDSWASALIAELDQFKN--EKAVNRNLSASSPEI--DLM----DDFLEMEQLAAMPNNKSGK-HVESGNVTTQSTLA-- 221 (554)
Q Consensus 153 ~~~~~a~~li~~~~~~~~--~~~~g~~~v~~~~~~--~l~----~~~~emerlvtl~~t~~G~-~~~sG~~tGG~~~~-- 221 (554)
+...++.+++.|++.+.. .+.+|.+.+|++++. .++ .+. ++++. +|+ +..+|.++||+...
T Consensus 599 ~~~~~~~dl~~~~~~~~~~~~~~~~~~~ivt~l~~a~~~~~~~~~~g----~~v~~----~G~~~~~gg~~~~~~~~~~~ 670 (1179)
T TIGR02168 599 GFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGY----RIVTL----DGDLVRPGGVITGGSAKTNS 670 (1179)
T ss_pred chhHHHHHHhcccHhHHHHHHHHhCCceEeCCHHHHHHHHHHcCCCc----eEEec----CCEEEcCCceEecCcccccc
Confidence 446778899999888887 678888888888775 322 233 66777 887 77777776665311
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 222 -ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAEL 267 (554)
Q Consensus 222 -~~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l 267 (554)
...+..++..+...+..+...+..+..++..+...+..+...+..+
T Consensus 671 ~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~ 717 (1179)
T TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717 (1179)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445555555555555555555444444444444444333333
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.51 E-value=4.3e-10 Score=135.55 Aligned_cols=116 Identities=25% Similarity=0.371 Sum_probs=77.8
Q ss_pred CCc-cccCC-cc-cCCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 205 SGK-HVESG-NV-TTQSTLAE-SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280 (554)
Q Consensus 205 ~G~-~~~sG-~~-tGG~~~~~-~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~ 280 (554)
+|+ +.++| .+ +||+.... .....++..+..++..+...+..+...+..+...+..+...+..+...+..+...+..
T Consensus 644 ~g~~v~~~G~~~~~gg~~~~~~~~~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 723 (1179)
T TIGR02168 644 GYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723 (1179)
T ss_pred CceEEecCCEEEcCCceEecCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899 99988 44 57764222 2344677888888888888888888888888888888888888888888887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSV 320 (554)
Q Consensus 281 ~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el 320 (554)
++..+..+...+..+...+..+..++..+...+..+..++
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~ 763 (1179)
T TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444444444444443333333
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.20 E-value=2.2e-06 Score=103.59 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 233 IHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEK 278 (554)
Q Consensus 233 ~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el 278 (554)
..++..+...+..+..++..+...+..+...+..+...+..+...+
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 718 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI 718 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888777766666665555554444433
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.15 E-value=1.6e-06 Score=104.49 Aligned_cols=54 Identities=35% Similarity=0.545 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 235 RTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKM 288 (554)
Q Consensus 235 el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l 288 (554)
++..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEEL 721 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888888888888888877776555544443333
No 12
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.94 E-value=4.2e-05 Score=87.23 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHH-HHhcCCCC--CCCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhH
Q 008764 4 EFESRLLELQSKA-ETAKSEPS--YHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDS 80 (554)
Q Consensus 4 ~le~~~~~~~~~~-~~~~~~~~--~~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~ 80 (554)
.|+++|.+++.+. .....+.+ +-....|...++.++..+..|..++.++..++....++....+..+..+.+.+.-.
T Consensus 376 ~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 376 RLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776 22222211 11122344444444555555555555555555444444444444444444444444
Q ss_pred HHHHHHHH
Q 008764 81 IKKVAKLE 88 (554)
Q Consensus 81 ~~ki~kLE 88 (554)
...+..|.
T Consensus 456 ~~~l~~lk 463 (1074)
T KOG0250|consen 456 SEELKDLK 463 (1074)
T ss_pred HHHHHHHH
Confidence 44444443
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=98.84 E-value=0.00019 Score=84.67 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCC--CCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhH
Q 008764 3 LEFESRLLELQSKAETAKSEPSY--HMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDS 80 (554)
Q Consensus 3 ~~le~~~~~~~~~~~~~~~~~~~--~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~ 80 (554)
.+|++++.++...+.....+... .....+...+..++..+..+..++..+.+++......+...+..+..+..+..+.
T Consensus 317 ~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766544433110 0113445555555555555555555555555555555555555555544444443
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.75 E-value=1.9e-05 Score=78.22 Aligned_cols=133 Identities=21% Similarity=0.289 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 307 AELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQI 386 (554)
Q Consensus 307 eele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~ 386 (554)
..++..+.............+.+....+..+...+..+......++..+..++.++..+...+..++..-.+.......+
T Consensus 95 ~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~ 174 (237)
T PF00261_consen 95 EELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEY 174 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 33333333333333333333333334444444444444444444444444444444444444444444444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 387 TVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQL 444 (554)
Q Consensus 387 e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql 444 (554)
+.++..|...+....... ......+..++..|+.+...|.........+...+
T Consensus 175 e~~i~~L~~~lkeaE~Ra-----e~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRA-----EFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444321 22333333444444444444444444444444443
No 15
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=0.00025 Score=79.59 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=31.8
Q ss_pred CCchhhHHHhhhhhhhhccc--cccCCC---ceeccCchh--hcchhhhhh
Q 008764 151 PSCSDSWASALIAELDQFKN--EKAVNR---NLSASSPEI--DLMDDFLEM 194 (554)
Q Consensus 151 ~~~~~~~a~~li~~~~~~~~--~~~~g~---~~v~~~~~~--~l~~~~~em 194 (554)
+.|.-|....||.+++.|.. +-.-|| .+||++-++ .++..|-.|
T Consensus 521 ~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m 571 (1200)
T KOG0964|consen 521 PNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKM 571 (1200)
T ss_pred ccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhc
Confidence 46677888999999999998 777777 567777666 444444333
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=98.73 E-value=0.00058 Score=80.50 Aligned_cols=34 Identities=24% Similarity=0.093 Sum_probs=14.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 008764 33 EKLEFLEKENSALKMELLIQSEELEIRAIERDLS 66 (554)
Q Consensus 33 ~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~ 66 (554)
..+..+.+++..+...+..+..++..+..+++..
T Consensus 363 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433
No 17
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=0.00014 Score=83.10 Aligned_cols=175 Identities=18% Similarity=0.300 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKM---EA 304 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~l---e~ 304 (554)
..+.++..+............+...++..+..+...+..++..+..+..++..+-..+..+...+..++..+... ..
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~ 858 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK 858 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH
Confidence 566666677777777777777777777777777777777777777777776666666666666666666653332 12
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 305 EKAELEMALAKSQDSVEAS------ELQLREATMQLEELQRELNLVNE-SKRIVESNVSSMEMEAQTMTAKINSLEEEVE 377 (554)
Q Consensus 305 eleele~el~~l~~el~~~------e~~i~ele~ele~l~~el~~l~~-~~~~le~~L~~le~ei~~l~~~i~~Le~el~ 377 (554)
.+.+++..+..+..+++.+ +.++..+...+..+-...-..++ .+..+..++..+..++..+...+......+.
T Consensus 859 ~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~ 938 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIA 938 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHH
Confidence 2333344444444444443 23344444444333322222211 2334445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 378 MERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 378 ~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
+......+++..+..++.++..+..
T Consensus 939 k~q~~l~~le~~~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 939 KAQKKLSELEREIEDTEKELDDLTE 963 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544
No 18
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=0.0041 Score=70.52 Aligned_cols=72 Identities=22% Similarity=0.159 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008764 30 DLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRA 101 (554)
Q Consensus 30 ~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~ 101 (554)
.+..++..+...+.....++.....+++....++...+-....+.+........++.+..+|..+++-++.+
T Consensus 396 ~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l 467 (1174)
T KOG0933|consen 396 TLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSL 467 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777777777778888888888888888888888888888888888888888888888888888877764
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.44 E-value=0.00058 Score=83.64 Aligned_cols=138 Identities=30% Similarity=0.404 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEK 306 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~el 306 (554)
.++.....++..+..++...+....+++.....+..++..+...+..-.....+.+..+..+......++..+..+..++
T Consensus 838 e~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~ 917 (1930)
T KOG0161|consen 838 EEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERL 917 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888888888888888888887777777776655555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008764 307 AELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQT 364 (554)
Q Consensus 307 eele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~ 364 (554)
+..+.....++.+....+..+..++..++++...+.++..++...+.++..++.++..
T Consensus 918 e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 918 EEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444444444444444444444444444444444443333333
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.43 E-value=0.00074 Score=77.37 Aligned_cols=171 Identities=22% Similarity=0.373 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 279 AELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEA-------SELQLREATMQLEELQRELNLVNESKRIV 351 (554)
Q Consensus 279 ~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~-------~e~~i~ele~ele~l~~el~~l~~~~~~l 351 (554)
..++..+...+.++..+.++++.....+..+...+...+.++.. ...++..+.+.+..+..+...++......
T Consensus 284 ~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~ 363 (1074)
T KOG0250|consen 284 NNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREI 363 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333333333332 23334444444444444444444444444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHhhHHHHHHHHHHHHHHHH
Q 008764 352 ESNVSSMEMEAQTMTAKINSLEEEV-EMERALSMQITVKCQKLEEEQWRMKQEVE-L-QQIAKSNAEVKIKQEDLEVAAG 428 (554)
Q Consensus 352 e~~L~~le~ei~~l~~~i~~Le~el-~~~~~~~~e~e~kl~eLe~el~~~~~e~~-~-~~~~~~~~~lk~~qeel~~a~~ 428 (554)
++.+...+..+..+...|..++.+. ........+.+.+++.|..+.+.+..... + .....+...+...+++......
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5555555555555555554444444 22233333333344444333333332110 0 0123344445555556666778
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 008764 429 KLAECQKTIQSLGKQLKSLAT 449 (554)
Q Consensus 429 kl~e~q~tI~~L~~ql~~L~~ 449 (554)
++..+.+.|......++.|..
T Consensus 444 ~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 444 EILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888874
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.42 E-value=0.00069 Score=83.03 Aligned_cols=52 Identities=37% Similarity=0.556 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 273 QMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASE 324 (554)
Q Consensus 273 ~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e 324 (554)
.+..+....+..+..+...+..++..+.++..+...++..+..+...+...+
T Consensus 954 k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~e 1005 (1930)
T KOG0161|consen 954 KLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEE 1005 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444444443333
No 22
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.37 E-value=0.00062 Score=73.73 Aligned_cols=179 Identities=22% Similarity=0.315 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKL-EQMDAEKAELEEKLEKMDAEKAKLEEKIEKM 302 (554)
Q Consensus 224 ~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~i-e~l~~el~~~e~el~~l~~kl~~Le~ele~l 302 (554)
..+.+|..|+.+|..+-.++..++++-..|+..+..++.-...-...| ..++.++..+...+.........++.++..+
T Consensus 39 rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl 118 (546)
T KOG0977|consen 39 REKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKL 118 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999988888888888888877776665432222222 2345567777777777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 303 EAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERAL 382 (554)
Q Consensus 303 e~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~ 382 (554)
+.+++++...+.+..........++..+...+..++.++..+...+..++..+..+..+...+...|..+...++++...
T Consensus 119 ~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88888888888888877888888888888888999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008764 383 SMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 383 ~~e~e~kl~eLe~el~~~~~ 402 (554)
..++..+++.|.+++.-+..
T Consensus 199 r~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 199 RVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHh
Confidence 88888888888888876663
No 23
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.32 E-value=0.001 Score=74.40 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=3.5
Q ss_pred CcCCcccc
Q 008764 473 TVGESWKL 480 (554)
Q Consensus 473 ~~~~~~~~ 480 (554)
.|...|.+
T Consensus 459 ~g~~~~~~ 466 (562)
T PHA02562 459 RGREDFSY 466 (562)
T ss_pred CCCCccCh
Confidence 34444533
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.29 E-value=0.025 Score=68.78 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008764 28 DPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMAC 99 (554)
Q Consensus 28 ~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~ 99 (554)
..++...+...+..+.....++......+.....+....+...+.+..+.....+++.++++++..+..++.
T Consensus 464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345666777777777777777777777776666666666666666666666666667777777666665554
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.22 E-value=0.0099 Score=64.64 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE 277 (554)
Q Consensus 226 ~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~e 277 (554)
...++....+..+|......++.+...++.++..+...+.........+...
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445445544444444444444444444444444444444444333
No 26
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.19 E-value=0.026 Score=64.56 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 008764 80 SIKKVAKLEAECRRLKAMACRA 101 (554)
Q Consensus 80 ~~~ki~kLEae~q~lr~~~~k~ 101 (554)
..+.+..+++.|.+|+.++..+
T Consensus 181 ~~~~~~~~e~~~~~le~lle~~ 202 (775)
T PF10174_consen 181 ALRRIREAEARIMRLESLLERK 202 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777776544433
No 27
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.17 E-value=0.026 Score=63.70 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008764 42 NSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASST 104 (554)
Q Consensus 42 ~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~~~~ 104 (554)
...++.+|..+..++..++..++...+=-+.+.+|..|...-+..=-.+.-.||+.+..++..
T Consensus 123 fE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~ 185 (717)
T PF09730_consen 123 FEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHLNI 185 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 334445555555555555555555544444555555554443333333345556655555443
No 28
>PRK11637 AmiB activator; Provisional
Probab=98.16 E-value=0.017 Score=62.42 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKME 303 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le 303 (554)
...+++.++.++..+..++..+..++..+..++..+..++..+...+...+.++..++.++..+..++..++.++....
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444444444444444444444444444444444444444444444444444444333
No 29
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.15 E-value=0.031 Score=63.91 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008764 48 ELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACR 100 (554)
Q Consensus 48 el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k 100 (554)
++..+..+.+....++.....+++.+..++.-....++...++..+|.-.+.+
T Consensus 115 q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~ 167 (775)
T PF10174_consen 115 QFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQS 167 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444555555555555555555555555556666666655543
No 30
>PRK11637 AmiB activator; Provisional
Probab=98.11 E-value=0.0092 Score=64.48 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 232 MIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKA 307 (554)
Q Consensus 232 l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~ele 307 (554)
++.++..++.++.....++..+..++..+..++..+..++..+...+...+.++..+..++..++.+|..++.++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444333333333333333
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.09 E-value=0.0072 Score=68.57 Aligned_cols=89 Identities=16% Similarity=0.295 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDK-------MDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIE 300 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~-------l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele 300 (554)
.+..|+.+++.|+.+|+.....=.+|...+.. +..++..++.+.+.++..+..+....+.-...+..+|+++.
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655544433444444332 22333333333333333333333333333334444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 008764 301 KMEAEKAELEMALAKS 316 (554)
Q Consensus 301 ~le~eleele~el~~l 316 (554)
.....+..++.++..-
T Consensus 499 eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 499 EERRQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.06 E-value=0.0059 Score=68.23 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 366 TAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK 401 (554)
Q Consensus 366 ~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~ 401 (554)
..++..++..+...+.....+..+...++.++.++.
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444333
No 33
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.03 E-value=0.043 Score=61.51 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=12.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 008764 72 TASKQHLDSIKKVAKLEAECRRLKAMA 98 (554)
Q Consensus 72 ~~~~q~~e~~~ki~kLEae~q~lr~~~ 98 (554)
.+...+......++..+...+.++.-+
T Consensus 102 ~a~~~~~~~~~~l~~~e~~~~~i~~~l 128 (569)
T PRK04778 102 KAKHEINEIESLLDLIEEDIEQILEEL 128 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544433
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=98.01 E-value=0.016 Score=68.45 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008764 424 EVAAGKLAECQKTIQSLGKQLKSLAT 449 (554)
Q Consensus 424 ~~a~~kl~e~q~tI~~L~~ql~~L~~ 449 (554)
.....++..++..+..+...+..+..
T Consensus 401 ~~l~~~i~~l~~~~~~~~~~i~eL~~ 426 (880)
T PRK03918 401 EEIEEEISKITARIGELKKEIKELKK 426 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554444443
No 35
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.99 E-value=0.063 Score=61.91 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKA 307 (554)
Q Consensus 239 Le~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~ele 307 (554)
+.+.|+..+......+..|+.....+......+..++.+....+..+.....++.+|+..++.++.+..
T Consensus 1568 V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1568 VVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555555555555555555555555555555555555555544433
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=97.97 E-value=0.028 Score=66.41 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764 418 IKQEDLEVAAGKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 418 ~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~ 448 (554)
.+...+..+..++..+...+..|...+..+.
T Consensus 402 ~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666777777777777776666654
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.95 E-value=0.034 Score=57.38 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 358 MEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEE 396 (554)
Q Consensus 358 le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~e 396 (554)
...++..++..+..+..++...+.....++..+..++..
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 333444444444444444444444444444444433333
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.94 E-value=0.035 Score=57.28 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLD 258 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~ 258 (554)
.++..|+.++..+-.++..++.+...|+.++.
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34555555555555555555444444443333
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.94 E-value=0.052 Score=59.19 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008764 428 GKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 428 ~kl~e~q~tI~~L~~ql~~L~ 448 (554)
.+-+++..-|..|+..+..++
T Consensus 438 ~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 438 EEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344444444555555555544
No 40
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.93 E-value=0.0034 Score=57.11 Aligned_cols=11 Identities=45% Similarity=0.468 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 008764 303 EAEKAELEMAL 313 (554)
Q Consensus 303 e~eleele~el 313 (554)
+.+++.++..+
T Consensus 48 E~eld~~~~~l 58 (143)
T PF12718_consen 48 EEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 41
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.91 E-value=0.0083 Score=66.81 Aligned_cols=86 Identities=23% Similarity=0.306 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 358 MEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTI 437 (554)
Q Consensus 358 le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI 437 (554)
...++..++.++..+..++......+..+...+..+-....+ .....++-++...+++-+++|...-.....+|++|
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~R---s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNR---SAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544444333333333333332221 11223455566666666667777777777777777
Q ss_pred HHHHHHHHH
Q 008764 438 QSLGKQLKS 446 (554)
Q Consensus 438 ~~L~~ql~~ 446 (554)
..+..++..
T Consensus 522 N~l~gkL~R 530 (594)
T PF05667_consen 522 NSLTGKLDR 530 (594)
T ss_pred HHHHHHHHh
Confidence 777777654
No 42
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.89 E-value=0.07 Score=59.58 Aligned_cols=51 Identities=29% Similarity=0.456 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA 276 (554)
Q Consensus 226 ~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~ 276 (554)
..++..++..+..+...+..+..++..+...+.++..++.........+..
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666665555555555555544444444433
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.89 E-value=0.033 Score=60.66 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 368 KINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447 (554)
Q Consensus 368 ~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L 447 (554)
.+..|...+..+......+..++..|+.++..-....+ +.+......+..+.+++..+..+++.+--+--.|..++...
T Consensus 304 ~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e-~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~Y 382 (546)
T KOG0977|consen 304 RISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFE-QALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAY 382 (546)
T ss_pred cccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHH
Confidence 33333333333333333444444444444443332110 12444555566666666666666666666666666666555
Q ss_pred h
Q 008764 448 A 448 (554)
Q Consensus 448 ~ 448 (554)
.
T Consensus 383 R 383 (546)
T KOG0977|consen 383 R 383 (546)
T ss_pred H
Confidence 4
No 44
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.89 E-value=0.14 Score=62.59 Aligned_cols=84 Identities=26% Similarity=0.281 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHH
Q 008764 5 FESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKV 84 (554)
Q Consensus 5 le~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki 84 (554)
++.++.+|+..+.....+ .-.++..+++++..+..++..+..++.-...++.+....++-+.+-+.-.-+++
T Consensus 634 ~e~~l~qLe~~le~~~~E--------~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~ 705 (1822)
T KOG4674|consen 634 KEKRLRQLENELESYKKE--------KRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEV 705 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899888866554 334566667777777777777777777666666666666666666666666666
Q ss_pred HHHHHHHHHHHH
Q 008764 85 AKLEAECRRLKA 96 (554)
Q Consensus 85 ~kLEae~q~lr~ 96 (554)
..|+++-+-+..
T Consensus 706 ~tL~er~~~l~~ 717 (1822)
T KOG4674|consen 706 ETLEERNKNLQS 717 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 666666555553
No 45
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.88 E-value=0.1 Score=60.35 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=16.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHH
Q 008764 35 LEFLEKENSALKMELLIQSEELEIRAIERDLSNQAA 70 (554)
Q Consensus 35 l~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~ 70 (554)
++.+.....+|+.+|+.+...|...+..+.......
T Consensus 1227 i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~ 1262 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQLQALTEDLPQEEETLSDITNSL 1262 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc
Confidence 333444444555555555555555554444433333
No 46
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.87 E-value=0.077 Score=59.88 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=15.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 410 AKSNAEVKIKQEDLEVAAGKLAECQKTIQS 439 (554)
Q Consensus 410 ~~~~~~lk~~qeel~~a~~kl~e~q~tI~~ 439 (554)
+....-++..+.++..+..-+-+...||-.
T Consensus 500 d~~~g~~kel~~r~~aaqet~yDrdqTI~K 529 (1243)
T KOG0971|consen 500 DMAKGARKELQKRVEAAQETVYDRDQTIKK 529 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334344444555555555656666666543
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.87 E-value=0.052 Score=61.16 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008764 224 SLRAELEAMIHRTAELE 240 (554)
Q Consensus 224 ~l~~ei~~l~~el~eLe 240 (554)
.++..+..|.+++..++
T Consensus 228 eLr~QvrdLtEkLetlR 244 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLR 244 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555666665555443
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.86 E-value=0.087 Score=59.08 Aligned_cols=68 Identities=19% Similarity=0.161 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008764 29 PDLFEKLEFLEKENS-----ALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKA 96 (554)
Q Consensus 29 ~~l~~rl~~~eke~~-----~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~ 96 (554)
++....+..++..+. ..+..+..+...+..++..+.........+...+.++-..+..+...-+.+|.
T Consensus 82 ~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk 154 (569)
T PRK04778 82 PDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRK 154 (569)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 33456666666677777777777777777778888888888888888888886
No 49
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.83 E-value=0.045 Score=55.00 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 008764 426 AAGKLAECQKTIQ 438 (554)
Q Consensus 426 a~~kl~e~q~tI~ 438 (554)
+..++.++.+.|.
T Consensus 233 ~~~elre~~k~ik 245 (294)
T COG1340 233 LQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 50
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.83 E-value=0.035 Score=63.11 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 422 DLEVAAGKLAECQKTIQSLGKQLKSL 447 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~L 447 (554)
+++.+...+..-..+|..|...+..+
T Consensus 630 q~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 630 QLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555566666555444
No 51
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.77 E-value=0.035 Score=52.10 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008764 292 KAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINS 371 (554)
Q Consensus 292 l~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~ 371 (554)
...|-.....++.+...+...+..++++...+......+.....++..+...++..+-.++.-+......+.+-...++.
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333333333444444444444444444443334444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 372 LEEEVEMERALSMQITVKCQKLEEEQ 397 (554)
Q Consensus 372 Le~el~~~~~~~~e~e~kl~eLe~el 397 (554)
|..-+...+....++..++..|++.+
T Consensus 163 L~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 52
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.76 E-value=0.11 Score=57.45 Aligned_cols=104 Identities=20% Similarity=0.267 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 299 IEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEM 378 (554)
Q Consensus 299 le~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~ 378 (554)
+..+..+++.....+.....++..+...+..|..++...+..+..+..........+..+..++..++.++..+...-.+
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 33344444444444444444444444444445555555555555554444444455555555555555555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 379 ERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 379 ~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
.+....++...+..+..+....+.
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ 386 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKK 386 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554
No 53
>PRK01156 chromosome segregation protein; Provisional
Probab=97.75 E-value=0.15 Score=60.50 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 008764 422 DLEVAAGKLAECQKTIQSLGKQLKSLATL 450 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~L~~~ 450 (554)
.+..+..++..+...|..+...+..+...
T Consensus 417 ~~~~l~~~i~~l~~~i~~l~~~~~el~~~ 445 (895)
T PRK01156 417 KLQDISSKVSSLNQRIRALRENLDELSRN 445 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444433
No 54
>PRK09039 hypothetical protein; Validated
Probab=97.71 E-value=0.016 Score=60.63 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKL 243 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l 243 (554)
.+|.....++..++.++
T Consensus 46 ~~i~~~~~eL~~L~~qI 62 (343)
T PRK09039 46 REISGKDSALDRLNSQI 62 (343)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444433
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.69 E-value=0.03 Score=54.93 Aligned_cols=54 Identities=13% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 327 LREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMER 380 (554)
Q Consensus 327 i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~ 380 (554)
+..|..++..++..+..+..++..+...+..++.++..+..++..++..+...+
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444445445444444444443
No 56
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.68 E-value=0.082 Score=64.98 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKL 271 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~i 271 (554)
+++.....+..+...++...+..+..+...+..+...+..|+.+.
T Consensus 286 EEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQa 330 (1486)
T PRK04863 286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDY 330 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444443333
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.68 E-value=0.032 Score=54.77 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 333 QLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERA 381 (554)
Q Consensus 333 ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~ 381 (554)
++..|..++..++.....++..+..+..++..+...+..+...+...+.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443333
No 58
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.62 E-value=0.18 Score=55.92 Aligned_cols=49 Identities=18% Similarity=0.069 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhh
Q 008764 31 LFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLD 79 (554)
Q Consensus 31 l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e 79 (554)
....+..+++++..++.++......-.....+++...+.++.+..+...
T Consensus 32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~ 80 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEK 80 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666665556666666666666666555443
No 59
>PRK09039 hypothetical protein; Validated
Probab=97.61 E-value=0.0099 Score=62.14 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=7.7
Q ss_pred ccccccccccc
Q 008764 536 RNGFAKFFSRT 546 (554)
Q Consensus 536 ~~~~~~~~~~~ 546 (554)
..|||.+.|-.
T Consensus 312 ~~G~G~~~Pi~ 322 (343)
T PRK09039 312 AAGFGEFQPLD 322 (343)
T ss_pred EEEeCCcCcCC
Confidence 47888877753
No 60
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.61 E-value=0.23 Score=56.94 Aligned_cols=51 Identities=27% Similarity=0.451 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQM 274 (554)
Q Consensus 224 ~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l 274 (554)
-+..+++.++..+..|+.+++.--..+..++.+++.+..++..+...+.++
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666555555556666666666655555555554
No 61
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.18 Score=54.75 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=11.4
Q ss_pred hhhHHHhhhhhhhhcc
Q 008764 154 SDSWASALIAELDQFK 169 (554)
Q Consensus 154 ~~~~a~~li~~~~~~~ 169 (554)
...|-++||.+..+..
T Consensus 163 mlhWlvdlI~~~t~~v 178 (581)
T KOG0995|consen 163 MLHWLVDLIRINTALV 178 (581)
T ss_pred HHHHHHHHHHHhHHHh
Confidence 4588888888765544
No 62
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.56 E-value=0.43 Score=58.73 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=25.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 008764 410 AKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDF 453 (554)
Q Consensus 410 ~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~ 453 (554)
......+......+..+...++.....+.+|.+.++...+...+
T Consensus 847 ~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~ 890 (1822)
T KOG4674|consen 847 DELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLN 890 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 33444444445566666666666666677777777666544333
No 63
>PRK01156 chromosome segregation protein; Provisional
Probab=97.55 E-value=0.34 Score=57.42 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 008764 82 KKVAKLEAE 90 (554)
Q Consensus 82 ~ki~kLEae 90 (554)
.++..|..+
T Consensus 423 ~~i~~l~~~ 431 (895)
T PRK01156 423 SKVSSLNQR 431 (895)
T ss_pred HHHHHHHHH
Confidence 333333333
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.55 E-value=0.074 Score=65.36 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 245 RMDAEKVDLEEKLDKMDAEKAELEEKLEQM 274 (554)
Q Consensus 245 ~le~ei~eLe~~l~~l~~e~~~l~~~ie~l 274 (554)
.....+...+..+.++...+.++..++..+
T Consensus 297 eA~kkLe~tE~nL~rI~diL~ELe~rL~kL 326 (1486)
T PRK04863 297 TSRRQLAAEQYRLVEMARELAELNEAESDL 326 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.46 E-value=0.21 Score=52.75 Aligned_cols=7 Identities=14% Similarity=0.396 Sum_probs=3.1
Q ss_pred ccccccc
Q 008764 536 RNGFAKF 542 (554)
Q Consensus 536 ~~~~~~~ 542 (554)
-+|+|.+
T Consensus 348 l~GYG~v 354 (420)
T COG4942 348 LRGYGLV 354 (420)
T ss_pred hccCceE
Confidence 3444443
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.21 Score=55.63 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008764 315 KSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSL 372 (554)
Q Consensus 315 ~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~L 372 (554)
.++.+++.+..++..|...+.+.+-.+......+..+..+......++..++.+|..+
T Consensus 441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433333333333333333333333333333333333333
No 67
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.32 E-value=0.45 Score=53.51 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008764 384 MQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 384 ~e~e~kl~eLe~el~~~~~ 402 (554)
.++..++.+++..+..++.
T Consensus 198 keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKE 216 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444443
No 68
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.31 E-value=0.15 Score=47.87 Aligned_cols=8 Identities=38% Similarity=0.272 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 008764 233 IHRTAELE 240 (554)
Q Consensus 233 ~~el~eLe 240 (554)
+.++..++
T Consensus 10 nrri~~le 17 (205)
T KOG1003|consen 10 NRRIQLLE 17 (205)
T ss_pred HHHHHHHH
Confidence 33333333
No 69
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.28 E-value=0.37 Score=59.47 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 226 RAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAE 263 (554)
Q Consensus 226 ~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e 263 (554)
...|.++..++.++...+..+..++..+...+..+..+
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777776666666554
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.28 E-value=0.5 Score=53.13 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL 281 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~ 281 (554)
+..+++.|..++..+..++.....+...|..........+.+++..+..+.....+.
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~ 141 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDR 141 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666655443333333333333444444444444444443333
No 71
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.27 E-value=0.26 Score=50.09 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008764 337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEV 416 (554)
Q Consensus 337 l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~l 416 (554)
+-.++..++..+..+...|.....+....+.+|..|..++-+.......+...-.++...+...+. .-
T Consensus 204 cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske------------~Q 271 (306)
T PF04849_consen 204 CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE------------SQ 271 (306)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------HH
Confidence 334444444444444444444444444444455555444444443333333333344443333322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764 417 KIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 417 k~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~ 448 (554)
..++.++..+..+.++|.......+.+++.+.
T Consensus 272 ~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 272 RQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23445777788888888888888888887765
No 72
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.26 E-value=0.89 Score=55.65 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008764 46 KMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLK 95 (554)
Q Consensus 46 ~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr 95 (554)
..++..+...+.....+..........+..++.+...+.++.+.+.+.++
T Consensus 468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 517 (1201)
T PF12128_consen 468 KEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQAR 517 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544555555555555555555555555444444444443
No 73
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.25 E-value=0.57 Score=53.23 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=3.6
Q ss_pred ceeeecCC
Q 008764 196 QLAAMPNN 203 (554)
Q Consensus 196 rlvtl~~t 203 (554)
++|-+|..
T Consensus 276 pvv~i~~E 283 (980)
T KOG0980|consen 276 PVVYIPSE 283 (980)
T ss_pred CceecCCC
Confidence 34455443
No 74
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.23 E-value=0.19 Score=47.34 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 332 MQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKL 393 (554)
Q Consensus 332 ~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eL 393 (554)
.++++++.-+..+++....+-.+...++.+...+..++..|+.+-.+.......+..+..+|
T Consensus 67 eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 67 EELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 33334444444444433333333333334444444444444433333333333333333333
No 75
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.21 E-value=0.62 Score=52.92 Aligned_cols=34 Identities=12% Similarity=-0.018 Sum_probs=15.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 410 AKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQ 443 (554)
Q Consensus 410 ~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~q 443 (554)
..+...++.+....+.+..+..+.+..+.+++.-
T Consensus 529 ~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~s 562 (980)
T KOG0980|consen 529 AQLEDLLKQKDRLAAELVAREEEREALRLEAERS 562 (980)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444455555554444444444433
No 76
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.20 E-value=0.59 Score=52.40 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 008764 436 TIQSLGKQLKSL 447 (554)
Q Consensus 436 tI~~L~~ql~~L 447 (554)
+--.+...+..+
T Consensus 509 thldyR~els~l 520 (1265)
T KOG0976|consen 509 THLDYRSELSEL 520 (1265)
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.19 E-value=0.6 Score=52.27 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008764 47 MELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKA 96 (554)
Q Consensus 47 ~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~ 96 (554)
..+..+.+.+..++.++......++.+.....++-..+..|...-+.+|.
T Consensus 101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk 150 (560)
T PF06160_consen 101 QAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRK 150 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555666666666667777777788888777775
No 78
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.67 Score=52.12 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008764 30 DLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLK 95 (554)
Q Consensus 30 ~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr 95 (554)
.+...-..+..++..|+..+..+..........+....+.+.+...+-.+...++..+-++...++
T Consensus 45 ~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~ 110 (698)
T KOG0978|consen 45 ALTVLFDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIR 110 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH
Confidence 466666677777777777777777777777777777777777777777777777776666644444
No 79
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.10 E-value=0.29 Score=46.91 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLE 254 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe 254 (554)
..|..+...+.++...+..+..+...|+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666655554443
No 80
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.6 Score=50.30 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 008764 223 SSLRAELEAMIHRTAELE 240 (554)
Q Consensus 223 ~~l~~ei~~l~~el~eLe 240 (554)
.+++.+|+.+..++.+..
T Consensus 11 e~lr~eierLT~el~q~t 28 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTT 28 (772)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666665543
No 81
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.06 E-value=0.22 Score=44.90 Aligned_cols=88 Identities=20% Similarity=0.307 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008764 278 KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSS 357 (554)
Q Consensus 278 l~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~ 357 (554)
+...+.....+.+++..++++++..+..+..+..+.......+..++.++..+...+..+..++..+...+..+...+..
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555555555555555555555555555555444444444444
Q ss_pred HHHHHHHH
Q 008764 358 MEMEAQTM 365 (554)
Q Consensus 358 le~ei~~l 365 (554)
++..+..|
T Consensus 92 ~q~kv~eL 99 (140)
T PF10473_consen 92 KQEKVSEL 99 (140)
T ss_pred HHHHHHHH
Confidence 44444333
No 82
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.96 E-value=0.54 Score=47.71 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008764 294 KLEEKIEKMEAEKAELEMALAKSQDS-VEASELQLREATMQLEELQRELNLVNESKRIVESNVS 356 (554)
Q Consensus 294 ~Le~ele~le~eleele~el~~l~~e-l~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~ 356 (554)
.|.+++.++..++.+++..+..-+.- +..+...|..++.+....+..+..+...+..+++.|.
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE 173 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE 173 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444444432211 2333344444444444444444444444444444433
No 83
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.94 E-value=1 Score=50.49 Aligned_cols=89 Identities=18% Similarity=0.305 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008764 355 VSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQ 434 (554)
Q Consensus 355 L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q 434 (554)
...+..++..+...+..+...+.......+.+...+.++...+..+..+. ......+..+..+-..|..++...+
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q-----~~~~~~l~~L~~dE~~Ar~~l~~~~ 420 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQ-----EEINESLQSLRKDEKEAREKLQKLK 420 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666677777777777777766532 3345555556555566777777777
Q ss_pred HHHHHHHHHHHHhh
Q 008764 435 KTIQSLGKQLKSLA 448 (554)
Q Consensus 435 ~tI~~L~~ql~~L~ 448 (554)
..+....+.+....
T Consensus 421 ~~l~~ikR~lek~n 434 (560)
T PF06160_consen 421 QKLREIKRRLEKSN 434 (560)
T ss_pred HHHHHHHHHHHHcC
Confidence 77777777776553
No 84
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.94 Score=52.64 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=4.6
Q ss_pred chhhhhcccC
Q 008764 449 TLEDFLIDTA 458 (554)
Q Consensus 449 ~~~~~~~~~~ 458 (554)
.+..+|+.+.
T Consensus 496 ~lKr~fPgv~ 505 (1141)
T KOG0018|consen 496 ALKRLFPGVY 505 (1141)
T ss_pred HHHHhCCCcc
Confidence 3444554443
No 85
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.88 E-value=1.2 Score=50.58 Aligned_cols=56 Identities=30% Similarity=0.405 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008764 389 KCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLAT 449 (554)
Q Consensus 389 kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~ 449 (554)
.+.+|+.++..+..+ ...+...+...|..+..+.+.+..-+.+|..|..++.++..
T Consensus 266 EiqKL~qQL~qve~E-----K~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 266 EIQKLKQQLLQVERE-----KSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666553 25567778888888999999999999999999999999886
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.86 E-value=0.74 Score=47.87 Aligned_cols=67 Identities=24% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNES 347 (554)
Q Consensus 281 ~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~ 347 (554)
++.....+..+.+.++.-...+...+..+..+...+...+..+..-+..+......+..++..++..
T Consensus 133 l~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 133 LEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555554444455555555555555555444444444444444455555555544443
No 87
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=96.82 E-value=0.67 Score=46.73 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 363 QTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQ--QIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSL 440 (554)
Q Consensus 363 ~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~--~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L 440 (554)
.-+..+++.++..+.+-......+...+..+...+..+.++.-.| .++..+..+-.+.++-.....+++..+..|..|
T Consensus 225 ~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~L 304 (391)
T KOG1850|consen 225 ALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRL 304 (391)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333333333333333333322222 234444444444444445566777788888888
Q ss_pred HHHHHHhhchhh
Q 008764 441 GKQLKSLATLED 452 (554)
Q Consensus 441 ~~ql~~L~~~~~ 452 (554)
++-+..|++...
T Consensus 305 ekLcRALq~ern 316 (391)
T KOG1850|consen 305 EKLCRALQTERN 316 (391)
T ss_pred HHHHHHHHhccc
Confidence 888888875443
No 88
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.82 E-value=1.5 Score=50.79 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhchh-hhhcccCCc
Q 008764 437 IQSLGKQLKSLATLE-DFLIDTASI 460 (554)
Q Consensus 437 I~~L~~ql~~L~~~~-~~~~~~~~~ 460 (554)
....-..+.|++... .|-.+...|
T Consensus 429 ~~d~~dAy~wlrenr~~FK~~vyeP 453 (1072)
T KOG0979|consen 429 SSDAYDAYQWLRENRSEFKDEVYEP 453 (1072)
T ss_pred chHHHHHHHHHHHCHHHhcccccCC
Confidence 344445566666655 444444444
No 89
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=1.4 Score=49.65 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764 422 DLEVAAGKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~L~ 448 (554)
++.....+...+++.+..|...+..+.
T Consensus 595 ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 595 ELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444455555555555554443
No 90
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=1.2 Score=48.51 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=11.4
Q ss_pred ccccccc--chhhhhhHH--HHHH
Q 008764 117 AESLVDS--QSDSWERLN--AVEM 136 (554)
Q Consensus 117 ~~~~~~~--~~~~g~rl~--~ve~ 136 (554)
|+||.|. ++..+..+| .||.
T Consensus 63 pRpl~dk~~~s~c~~~I~~fL~en 86 (581)
T KOG0995|consen 63 PRPLSDKRYRSQCIRQIYNFLVEN 86 (581)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHc
Confidence 5566554 555566664 4665
No 91
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.73 E-value=0.59 Score=44.80 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 428 GKLAECQKTIQSLGKQL 444 (554)
Q Consensus 428 ~kl~e~q~tI~~L~~ql 444 (554)
..+...+..|..|...+
T Consensus 171 ~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 92
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.71 E-value=0.94 Score=46.86 Aligned_cols=92 Identities=17% Similarity=0.306 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 229 LEAMIHRTAELEQKLERMDAEKVDL-------EEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEK 301 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eL-------e~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~ 301 (554)
++.+...+..+..++.....+.... ..+++....+..............+.....++..+...-..+...+..
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~ 155 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT 155 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333 334444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008764 302 MEAEKAELEMALAKSQDSV 320 (554)
Q Consensus 302 le~eleele~el~~l~~el 320 (554)
+-.+...++.+...+...-
T Consensus 156 l~~qr~ql~aq~qsl~a~~ 174 (499)
T COG4372 156 LAEQRRQLEAQAQSLQASQ 174 (499)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 93
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.69 E-value=1.4 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEK 250 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei 250 (554)
-++..+.+++..|.+.|+.-++++
T Consensus 346 ~eLdK~~~~i~~Ln~~leaReaql 369 (961)
T KOG4673|consen 346 LELDKTKKEIKMLNNALEAREAQL 369 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555433333
No 94
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.67 E-value=1.1 Score=48.00 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLER 245 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~ 245 (554)
.++..++.++..+...+..
T Consensus 81 ~~l~~l~~~~~~l~a~~~~ 99 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVAR 99 (423)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444443
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=1.4 Score=49.84 Aligned_cols=55 Identities=16% Similarity=0.392 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 251 VDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAE 305 (554)
Q Consensus 251 ~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~e 305 (554)
..++..+..+..++..+.+....++.+.++++.+++.......++.+++.-++.+
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q 714 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ 714 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555544444444444444444333
No 96
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.64 E-value=0.91 Score=46.61 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=32.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 350 IVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK 401 (554)
Q Consensus 350 ~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~ 401 (554)
.+=.+++.+...+..++..+..+-.+.++.....+.+..++..|..++.-+-
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L 181 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYIL 181 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666666666666666666666666677777777766665443
No 97
>PRK11281 hypothetical protein; Provisional
Probab=96.62 E-value=2.6 Score=50.74 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764 412 SNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 412 ~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~ 448 (554)
....+.....+...+...++....+..++..|+.++.
T Consensus 297 ~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~ 333 (1113)
T PRK11281 297 ATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLK 333 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444556667777777788888888887775
No 98
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.61 E-value=0.93 Score=45.58 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 321 EASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRM 400 (554)
Q Consensus 321 ~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~ 400 (554)
.-+-.++...+.++..++.++......+.+-.--++.++.++...+.++..++.-...+......+..+..-+++.+..+
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Ql 226 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQL 226 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555544444444444445555555555555555555555555555555555555555555554
Q ss_pred HH
Q 008764 401 KQ 402 (554)
Q Consensus 401 ~~ 402 (554)
..
T Consensus 227 qs 228 (305)
T PF14915_consen 227 QS 228 (305)
T ss_pred HH
Confidence 43
No 99
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.60 E-value=1 Score=45.87 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 325 LQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERAL 382 (554)
Q Consensus 325 ~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~ 382 (554)
.++.....++..+..+|..-.......+..+..+..++..++.++..+-.+-+.....
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~ 263 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQH 263 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444555555555554444444444444444455544544444444444443333
No 100
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.56 E-value=1.9 Score=48.56 Aligned_cols=148 Identities=15% Similarity=0.171 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 008764 302 MEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEME-- 379 (554)
Q Consensus 302 le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~-- 379 (554)
+..++..+.-.+......++.+...+.+|+++.+.+......++..+...+..+..+.......+.+++.+.+.+-..
T Consensus 328 ltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 328 LTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344444444444444444455555666666666666666666666666666666666666777777777777766544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 008764 380 -RALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQE-DLEVAAGKLAECQKTIQSLGKQLKSLATLE 451 (554)
Q Consensus 380 -~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qe-el~~a~~kl~e~q~tI~~L~~ql~~L~~~~ 451 (554)
+..+..+...+.+..+.+..+...+-. .+.....++.+.+ .--.....+..|.+-|.-+.....+++...
T Consensus 408 ~~~dhe~~kneL~~a~ekld~mgthl~m--ad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qr 479 (1265)
T KOG0976|consen 408 GKKDHEAAKNELQEALEKLDLMGTHLSM--ADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQR 479 (1265)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHH--HHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhc
Confidence 334455555555555555555442100 0111112222222 113334567778888877777777776543
No 101
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.49 E-value=2.5 Score=48.98 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008764 79 DSIKKVAKLEAECRRLK 95 (554)
Q Consensus 79 e~~~ki~kLEae~q~lr 95 (554)
+....++.++++|.+||
T Consensus 202 ~lr~eLddleae~~klr 218 (1195)
T KOG4643|consen 202 RLRNELDDLEAEISKLR 218 (1195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344555666666665
No 102
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=2.5 Score=49.01 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=7.1
Q ss_pred Cccccccccccc
Q 008764 532 PEKNRNGFAKFF 543 (554)
Q Consensus 532 ~~~~~~~~~~~~ 543 (554)
++-.+-||--+|
T Consensus 525 e~l~~lGF~gyl 536 (1072)
T KOG0979|consen 525 EELKRLGFEGYL 536 (1072)
T ss_pred HHHHhcChHHHh
Confidence 455667776544
No 103
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.47 E-value=1.3 Score=49.76 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 238 ELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMD 275 (554)
Q Consensus 238 eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~ 275 (554)
.+...+..+..++..+.........+++.++.++++++
T Consensus 165 ~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 165 ELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444443
No 104
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.45 E-value=0.93 Score=43.71 Aligned_cols=133 Identities=23% Similarity=0.349 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 264 KAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL 343 (554)
Q Consensus 264 ~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~ 343 (554)
|..++.++..+.......+..+..+..+...+..-+..+..++.++...+..... .+..+..+...+..++.++..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k----dK~~L~~~k~rl~~~ek~l~~ 104 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK----DKQSLQNLKARLKELEKELKD 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333333333333344444444444444444444433321 112233334444444444444
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 008764 344 VNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALS-MQITVKCQKLEEEQWRM 400 (554)
Q Consensus 344 l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~-~e~e~kl~eLe~el~~~ 400 (554)
+.-....++.++..++.+...+..+....-.++...-... --++.++..+...++..
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~k 162 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKK 162 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555444443333321111 12344444444444443
No 105
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.45 E-value=0.94 Score=43.73 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 296 EEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRE 340 (554)
Q Consensus 296 e~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~e 340 (554)
...+..+..+.+.+...+..++..+..+......+...+..++..
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~N 112 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKN 112 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444444444333
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.43 E-value=1.4 Score=45.49 Aligned_cols=160 Identities=20% Similarity=0.202 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008764 279 AELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSM 358 (554)
Q Consensus 279 ~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~l 358 (554)
..++..-..+..+.+.++.-...+...++.+......+...+.....-+..+......++.++..+......++.- =
T Consensus 126 aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~---d 202 (312)
T smart00787 126 ARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC---D 202 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhC---C
Confidence 3344444445555555555555555555555555555554444444444445555555555555444433332210 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----
Q 008764 359 EMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQ---- 434 (554)
Q Consensus 359 e~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q---- 434 (554)
..++..++.++.....++...+....+...++..+...++.... .......+|+.+...+..|.
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~------------~k~e~~~~I~~ae~~~~~~r~~t~ 270 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN------------KKSELNTEIAEAEKKLEQCRGFTF 270 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhcCCCCH
Confidence 11223333333333333333333333333333333333333222 22333345555666555554
Q ss_pred HHHHHHHHHHHHhhchhhh
Q 008764 435 KTIQSLGKQLKSLATLEDF 453 (554)
Q Consensus 435 ~tI~~L~~ql~~L~~~~~~ 453 (554)
..|..|..++..++.+..+
T Consensus 271 ~Ei~~Lk~~~~~Le~l~g~ 289 (312)
T smart00787 271 KEIEKLKEQLKLLQSLTGW 289 (312)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3566677776666655543
No 107
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.37 E-value=0.88 Score=44.99 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 277 EKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344 (554)
Q Consensus 277 el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l 344 (554)
++..+..+...+......+++.-+++..++.--+..+.-++-++...+.+|..++.++..++.+++..
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333444444444444444444433
No 108
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.35 E-value=1.8 Score=46.21 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008764 232 MIHRTAELEQKLERMDAEK 250 (554)
Q Consensus 232 l~~el~eLe~~l~~le~ei 250 (554)
+..++..++.++..+..++
T Consensus 79 ~~~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEV 97 (423)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 109
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=2.3 Score=46.10 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 226 RAELEAMIHRTAELEQKLERMDAEK 250 (554)
Q Consensus 226 ~~ei~~l~~el~eLe~~l~~le~ei 250 (554)
..+++.++.++..|..++.+...++
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~ 31 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEK 31 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777664444
No 110
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.19 E-value=1.9 Score=50.12 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 249 EKVDLEEKLDKMDAEKAELEEKLEQMDA 276 (554)
Q Consensus 249 ei~eLe~~l~~l~~e~~~l~~~ie~l~~ 276 (554)
...-+..++..+..++...+.++..+..
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544444443
No 111
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.18 E-value=2 Score=44.72 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008764 230 EAMIHRTAELEQKLERMDAEK 250 (554)
Q Consensus 230 ~~l~~el~eLe~~l~~le~ei 250 (554)
.+|...+.+-+..+..++.++
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~ 98 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEET 98 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 112
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.14 E-value=2.9 Score=46.16 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 324 ELQLREATMQLEELQRELNLVNESKR--------IVESNVSSMEMEAQTMTAKINSLEEEVEME 379 (554)
Q Consensus 324 e~~i~ele~ele~l~~el~~l~~~~~--------~le~~L~~le~ei~~l~~~i~~Le~el~~~ 379 (554)
+..+..++.+++.++.++...+.... .....+.....++..|...+..++.-+..+
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e 311 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE 311 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443221 222333334445555555555554444333
No 113
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.12 E-value=0.0014 Score=76.44 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 008764 5 FESRLLELQSKAETAKSE 22 (554)
Q Consensus 5 le~~~~~~~~~~~~~~~~ 22 (554)
|++...+|..+|-....+
T Consensus 2 ~~~~~~~l~~~l~kke~E 19 (859)
T PF01576_consen 2 LERQKEELEEQLKKKEEE 19 (859)
T ss_dssp ------------------
T ss_pred chhHHHHHHHHHHhhHHH
Confidence 344445555555444444
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.08 E-value=2.2 Score=44.30 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=30.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 346 ESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 346 ~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
+++............++......|++...++........+-+.++..++.+...+..
T Consensus 217 ~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leq 273 (499)
T COG4372 217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQ 273 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555554444455555566666666666555
No 115
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.08 E-value=4.9 Score=48.33 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764 415 EVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 415 ~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~ 448 (554)
.+.....+-..+...+.....+..++..|+.++.
T Consensus 280 ~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 280 RMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344445666777777778888888887776
No 116
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.07 E-value=2.3 Score=44.47 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 222 ESSLRAELEAMIHRTAELEQKLERMDAEKV 251 (554)
Q Consensus 222 ~~~l~~ei~~l~~el~eLe~~l~~le~ei~ 251 (554)
...+-..+..+..+.+.+..+++.+....+
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kck 74 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCK 74 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHH
Confidence 444556666666666666666655544443
No 117
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.04 E-value=2.3 Score=46.79 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 304 AEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN 342 (554)
Q Consensus 304 ~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~ 342 (554)
.++.+++.++..+..........+..+..+++.++..+.
T Consensus 254 ~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 254 GRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333444555555555555443
No 118
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.04 E-value=3.3 Score=46.00 Aligned_cols=14 Identities=7% Similarity=0.123 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 008764 385 QITVKCQKLEEEQW 398 (554)
Q Consensus 385 e~e~kl~eLe~el~ 398 (554)
.+-..+.+|...|.
T Consensus 584 ~lvqqv~dLR~~L~ 597 (961)
T KOG4673|consen 584 MLVQQVEDLRQTLS 597 (961)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 119
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.90 E-value=0.0021 Score=75.12 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 364 TMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMK 401 (554)
Q Consensus 364 ~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~ 401 (554)
.+..++..++..++........+......|..++..+.
T Consensus 325 kL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~ 362 (859)
T PF01576_consen 325 KLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLT 362 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444443
No 120
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=2.3 Score=42.48 Aligned_cols=64 Identities=16% Similarity=0.383 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEK 292 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl 292 (554)
|..-...+..+......+..++..|..++..+...+..+..++.....++..++.++..+...+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554444444444444444444444444444444444444333333
No 121
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.82 E-value=3.9 Score=45.04 Aligned_cols=85 Identities=24% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 232 MIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEM 311 (554)
Q Consensus 232 l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~ 311 (554)
.++++..|+..-+.+.-++..|..++..--..|.+|+..|+.-...+...++.+++---....|+.+.-.+-.++.+|.-
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL 188 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL 188 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH
Confidence 34444444444444444455555555555555666666666655555555555444333333333333333333333333
Q ss_pred HHHHH
Q 008764 312 ALAKS 316 (554)
Q Consensus 312 el~~l 316 (554)
.+..+
T Consensus 189 kltal 193 (861)
T KOG1899|consen 189 KLTAL 193 (861)
T ss_pred HHHHH
Confidence 33333
No 122
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.80 E-value=5.9 Score=47.00 Aligned_cols=36 Identities=31% Similarity=0.503 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 252 DLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEK 287 (554)
Q Consensus 252 eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~ 287 (554)
+...++......+..++..+..+..+++.++.....
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~ 533 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN 533 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555544444444443333
No 123
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.73 E-value=2.1 Score=41.35 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 008764 415 EVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLI 455 (554)
Q Consensus 415 ~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~ 455 (554)
++..++..+....-++..++.++..-.+....|..+||=|+
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555556666666666666665444
No 124
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.67 E-value=4.4 Score=44.61 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008764 253 LEEKLDKMDAEKAELEEKLEQM 274 (554)
Q Consensus 253 Le~~l~~l~~e~~~l~~~ie~l 274 (554)
++.++..+..++...+..+..+
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 125
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.66 E-value=2.8 Score=42.21 Aligned_cols=95 Identities=18% Similarity=0.298 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKME 303 (554)
Q Consensus 224 ~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le 303 (554)
.+...++.+...+..+...+......+..++..+..+..+...+..+..........+.........+...|...+..+.
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQ 100 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555555555666666666666666666666655555555555444445555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 008764 304 AEKAELEMALAKSQD 318 (554)
Q Consensus 304 ~eleele~el~~l~~ 318 (554)
..+..+..++..+..
T Consensus 101 ~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 101 DNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHhCc
Confidence 555555555544443
No 126
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.62 E-value=1.9 Score=42.76 Aligned_cols=109 Identities=19% Similarity=0.284 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 249 EKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLR 328 (554)
Q Consensus 249 ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ 328 (554)
.|.+|+..++.+..+...-.-.++.+++.+................|.++...+-...+.++....++..++...+.++.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~ 98 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN 98 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence 44445555555555544444455555544444444444444444444444444444444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008764 329 EATMQLEELQRELNLVNESKRIVESNVSS 357 (554)
Q Consensus 329 ele~ele~l~~el~~l~~~~~~le~~L~~ 357 (554)
-++..+...+..++.++..+..+...|+.
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444444444433
No 127
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.57 E-value=4 Score=43.46 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=10.6
Q ss_pred hhHHHhhhhhhhhcc
Q 008764 155 DSWASALIAELDQFK 169 (554)
Q Consensus 155 ~~~a~~li~~~~~~~ 169 (554)
..|.++||.|.+..-
T Consensus 199 lhW~V~li~~~~~~~ 213 (622)
T COG5185 199 LHWMVRLIIKLDMCL 213 (622)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578888888765443
No 128
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.56 E-value=2.8 Score=48.82 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 234 HRTAELEQKLERMDAEK 250 (554)
Q Consensus 234 ~el~eLe~~l~~le~ei 250 (554)
.++..+..++...+.++
T Consensus 201 ~ql~~l~~~l~~aE~~l 217 (754)
T TIGR01005 201 PEIADLSKQSRDAEAEV 217 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 129
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.52 E-value=5 Score=44.22 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=12.9
Q ss_pred CCCCCcccccccc-ccccccccc
Q 008764 528 NQINPEKNRNGFA-KFFSRTKNG 549 (554)
Q Consensus 528 ~~~~~~~~~~~~~-~~~~~~~~~ 549 (554)
++.-.++-||||+ +||--+-++
T Consensus 408 ~pfl~e~kr~~~~g~~~~~~sn~ 430 (861)
T KOG1899|consen 408 APFLDELKRNGNEGANHNYSSNS 430 (861)
T ss_pred chhhhhccccCCcccccccCcCc
Confidence 3344578888887 555444443
No 130
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.43 E-value=2.9 Score=40.98 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 365 MTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQL 444 (554)
Q Consensus 365 l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql 444 (554)
...+|..|+.++..-+....++.....+|-.-+..+.. ++...+.-|--+..+|.+-.+.|..|.+.+
T Consensus 234 s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLde------------dVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 234 SEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDE------------DVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH------------HHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677766666555555555444444444444333 333333334444455555555555555444
Q ss_pred HHhhchhhhhcccCCccccccCcccccCCcC
Q 008764 445 KSLATLEDFLIDTASIPEFSRAALPIPKTVG 475 (554)
Q Consensus 445 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (554)
. .....++|.-..++-...+.....+||
T Consensus 302 ~---q~sqav~d~~~~~~a~~~~~~~e~~~k 329 (330)
T KOG2991|consen 302 E---QVSQAVGDKKDEVDAIDEDAKEEIAGK 329 (330)
T ss_pred H---HHHHHhccccccccccCCcchhhcccC
Confidence 3 334566676666665555554444444
No 131
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.29 E-value=5.6 Score=43.37 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 225 LRAELEAMIHRTAELEQKLERMDAEKV 251 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~le~ei~ 251 (554)
...++..++.++..+...+..+...+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 95 EENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666665555443
No 132
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=95.27 E-value=3.8 Score=41.31 Aligned_cols=15 Identities=40% Similarity=0.361 Sum_probs=7.0
Q ss_pred CccccCCCCccccCC
Q 008764 476 ESWKLPSNVTFSHKR 490 (554)
Q Consensus 476 ~~~~~~~~~~~~~~~ 490 (554)
..|++-+|+..+-+|
T Consensus 191 ~~~~~~sng~~~kr~ 205 (351)
T PF07058_consen 191 NFSKLSSNGGLSKRR 205 (351)
T ss_pred ccccccCCCccccCC
Confidence 445565554333333
No 133
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.20 E-value=8.9 Score=45.18 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=10.0
Q ss_pred ceeeecCCCCCc--cccCCc
Q 008764 196 QLAAMPNNKSGK--HVESGN 213 (554)
Q Consensus 196 rlvtl~~t~~G~--~~~sG~ 213 (554)
-||.| .|. |..+|+
T Consensus 293 NLVDL----AGSENI~RSGA 308 (1041)
T KOG0243|consen 293 NLVDL----AGSENISRSGA 308 (1041)
T ss_pred ceeec----ccccccccccc
Confidence 46666 777 777877
No 134
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.15 E-value=6 Score=43.00 Aligned_cols=116 Identities=18% Similarity=0.277 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 327 LREATMQLEELQRELNLVNESKRIVES---NVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQE 403 (554)
Q Consensus 327 i~ele~ele~l~~el~~l~~~~~~le~---~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e 403 (554)
+..++.....++.+++.++..-...+. .....+.++..+...+..+...+.......+.+...+..+...+..+..+
T Consensus 318 l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~ 397 (570)
T COG4477 318 LEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDE 397 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhh
Confidence 333334444444455444443222222 22234455555556666666665555555566666666666666666553
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 404 VELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447 (554)
Q Consensus 404 ~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L 447 (554)
. ..+...+..++++=..|...+...+.++..+.+-+...
T Consensus 398 q-----~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~ 436 (570)
T COG4477 398 Q-----EKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKS 436 (570)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 33444555555544456666666666666666555443
No 135
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.10 E-value=13 Score=46.38 Aligned_cols=41 Identities=29% Similarity=0.511 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 233 IHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ 273 (554)
Q Consensus 233 ~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~ 273 (554)
..++.+|+..|..+..++..+..++..+...+..+......
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~ 781 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAG 781 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555444333
No 136
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.03 E-value=7.5 Score=43.43 Aligned_cols=74 Identities=26% Similarity=0.420 Sum_probs=40.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008764 349 RIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAA 427 (554)
Q Consensus 349 ~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~ 427 (554)
..++.++......-..+..++..+..++..+.-...++...|..+.-+-..+..+. .....+++..++++....
T Consensus 453 ~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~-----~~~~~elKk~qedi~~~k 526 (786)
T PF05483_consen 453 HDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQET-----SDMALELKKQQEDINNSK 526 (786)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHH
Confidence 34444444444444555566666666666666666666667777766655555432 334444555555444333
No 137
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.96 E-value=6.2 Score=42.08 Aligned_cols=100 Identities=21% Similarity=0.352 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 008764 243 LERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKM-------EAEKAELEMALAK 315 (554)
Q Consensus 243 l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~l-------e~eleele~el~~ 315 (554)
|..+...-..-+..++.+...--.|+.++++++..+...+- +.+-+.+|...+++| --++.+++..+..
T Consensus 319 L~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqv----fvDiinkLk~niEeLIedKY~viLEKnd~~k~lqn 394 (527)
T PF15066_consen 319 LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQV----FVDIINKLKENIEELIEDKYRVILEKNDIEKTLQN 394 (527)
T ss_pred HHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHH
Confidence 33333333344445555555555555555555554433221 112222233333332 2333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 316 SQDSVEASELQLREATMQLEELQRELNLVNE 346 (554)
Q Consensus 316 l~~el~~~e~~i~ele~ele~l~~el~~l~~ 346 (554)
+..-+...+..+.+-..+-+.++.++.++..
T Consensus 395 Lqe~la~tqk~LqEsr~eKetLqlelkK~k~ 425 (527)
T PF15066_consen 395 LQEALANTQKHLQESRNEKETLQLELKKIKA 425 (527)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 4444444444444444444444444444443
No 138
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.89 E-value=3.5 Score=38.84 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008764 422 DLEVAAGKLAECQKTIQSLG 441 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~ 441 (554)
.+......+......+..+.
T Consensus 153 ~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 153 EVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 139
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.87 E-value=0.51 Score=45.26 Aligned_cols=6 Identities=50% Similarity=0.789 Sum_probs=0.0
Q ss_pred HHHHHH
Q 008764 253 LEEKLD 258 (554)
Q Consensus 253 Le~~l~ 258 (554)
+..++.
T Consensus 79 l~~ELa 84 (194)
T PF08614_consen 79 LQEELA 84 (194)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 140
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.84 E-value=3.1 Score=44.70 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEK 250 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei 250 (554)
-.+.|..++..++.+..+++.+.
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~ 182 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKA 182 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHH
Confidence 34455555555555544444433
No 141
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.77 E-value=2.9 Score=37.41 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 422 DLEVAAGKLAECQKTIQSLGKQLKS 446 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~ 446 (554)
++..+..++.++...-.-|..|+..
T Consensus 106 e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 106 ELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555543
No 142
>PRK10869 recombination and repair protein; Provisional
Probab=94.75 E-value=8.9 Score=42.93 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 238 ELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA 276 (554)
Q Consensus 238 eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~ 276 (554)
.+-..+..+..++..+.........+++.++.+++++..
T Consensus 161 ~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 161 AAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 333444444445555544444555555555555555543
No 143
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.72 E-value=4.2 Score=38.97 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008764 362 AQTMTAKINSLEEEVEMERALS 383 (554)
Q Consensus 362 i~~l~~~i~~Le~el~~~~~~~ 383 (554)
+..+...++.|..++..++...
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~ 154 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRR 154 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555555554433
No 144
>PF13514 AAA_27: AAA domain
Probab=94.59 E-value=15 Score=44.81 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 290 AEKAKLEEKIEKMEAEKAELEMAL 313 (554)
Q Consensus 290 ~kl~~Le~ele~le~eleele~el 313 (554)
..+..++..+..+...+..+...+
T Consensus 808 ~~~~~~~~~~~~~~~~l~~~~~~l 831 (1111)
T PF13514_consen 808 EQLEELEEELEQAEEELEELEAEL 831 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 145
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.37 E-value=1.1 Score=46.19 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 373 EEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 373 e~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
..++.........+..++.-....+.++++
T Consensus 105 ~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 105 QLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344455555555666666654
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.33 E-value=1.1 Score=46.45 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 302 MEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEME 379 (554)
Q Consensus 302 le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~ 379 (554)
++.+..++..++..++.+...+..++..++.+...+..+..........+..++.....+...+..++......++.+
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333444444444444444444444444444444433
No 147
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.30 E-value=11 Score=44.35 Aligned_cols=24 Identities=17% Similarity=-0.109 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 378 MERALSMQITVKCQKLEEEQWRMK 401 (554)
Q Consensus 378 ~~~~~~~e~e~kl~eLe~el~~~~ 401 (554)
+++....+....+..+...+.+..
T Consensus 536 ~l~~~~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 536 KLRRSLEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333334444444444444444443
No 148
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.29 E-value=15 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 423 LEVAAGKLAECQKTIQSLGKQLKS 446 (554)
Q Consensus 423 l~~a~~kl~e~q~tI~~L~~ql~~ 446 (554)
+......+..+...+..+...+..
T Consensus 419 ~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 419 LEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 149
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.26 E-value=5.6 Score=39.65 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 008764 392 KLEEEQWRMK 401 (554)
Q Consensus 392 eLe~el~~~~ 401 (554)
.++.+|..+.
T Consensus 186 ~lq~QL~~L~ 195 (246)
T PF00769_consen 186 RLQEQLKELK 195 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 150
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.10 E-value=18 Score=43.80 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 008764 424 EVAAGKLAECQKTIQSLGKQLKSLATLEDFLI 455 (554)
Q Consensus 424 ~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~ 455 (554)
.....++..+...+..+......+..+.++++
T Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 887 (1047)
T PRK10246 856 ADNRQQQQALMQQIAQATQQVEDWGYLNSLIG 887 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344555555555555555555555555443
No 151
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.09 E-value=3.1 Score=40.95 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=9.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 008764 352 ESNVSSMEMEAQTMTAKINSLE 373 (554)
Q Consensus 352 e~~L~~le~ei~~l~~~i~~Le 373 (554)
...+..+..++..+...++.+.
T Consensus 80 ~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 80 QEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444443
No 152
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.92 E-value=11 Score=40.72 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 249 EKVDLEEKLDKMDAEKAELEEKLEQMDA 276 (554)
Q Consensus 249 ei~eLe~~l~~l~~e~~~l~~~ie~l~~ 276 (554)
...-++.++..+..++...+..+..|..
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544
No 153
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.91 E-value=9.3 Score=39.80 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=27.6
Q ss_pred cCCcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 210 ESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEK 250 (554)
Q Consensus 210 ~sG~~tGG~~~~~~~l~~ei~~l~~el~eLe~~l~~le~ei 250 (554)
+.|--+||-.+....+..++++++..+.....+....+..+
T Consensus 281 ~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~ 321 (593)
T KOG4807|consen 281 SRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSAL 321 (593)
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhH
Confidence 45666777666666778888888888877766655444333
No 154
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.89 E-value=6.3 Score=37.77 Aligned_cols=16 Identities=6% Similarity=0.219 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 008764 229 LEAMIHRTAELEQKLE 244 (554)
Q Consensus 229 i~~l~~el~eLe~~l~ 244 (554)
|.=|+..+.+...++.
T Consensus 12 IsLLKqQLke~q~E~~ 27 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVN 27 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 155
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.83 E-value=8.1 Score=38.82 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 243 LERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEK 298 (554)
Q Consensus 243 l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~e 298 (554)
+..+...+..+..+..........+.............+...+..+...+..+-.+
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~ 109 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQ 109 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333
No 156
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.76 E-value=0.13 Score=52.53 Aligned_cols=74 Identities=15% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEK 301 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~ 301 (554)
++..+.+++..|+..+..+...+..+...+..+...++++...+.++..++..+...+..+...+..+...+..
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~ 102 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSS 102 (326)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 45555666666666555555555555555555555555555555554444444444444443333333333333
No 157
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.73 E-value=11 Score=40.17 Aligned_cols=54 Identities=22% Similarity=0.440 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 264 KAELEEKLEQMDAE-------KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQ 317 (554)
Q Consensus 264 ~~~l~~~ie~l~~e-------l~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~ 317 (554)
++.|+..|+++..+ ..+++..++.+..-+...++.+.+-..+++.+..++.++.
T Consensus 364 inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k 424 (527)
T PF15066_consen 364 INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIK 424 (527)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 44455555544332 2233333344443333444444444444444444444333
No 158
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.66 E-value=20 Score=42.77 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764 421 EDLEVAAGKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 421 eel~~a~~kl~e~q~tI~~L~~ql~~L~ 448 (554)
..+......+..+...+..+...+..+.
T Consensus 410 ~~~~e~~~~~~~~~~~l~~~~~~~~~~~ 437 (908)
T COG0419 410 EELEELEKELEELERELEELEEEIKKLE 437 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555544444
No 159
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.64 E-value=12 Score=40.34 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=6.8
Q ss_pred hhhhhcccCCccc
Q 008764 450 LEDFLIDTASIPE 462 (554)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (554)
..-.+++++..|+
T Consensus 377 ~~~~Vi~~a~~P~ 389 (444)
T TIGR03017 377 TDISILNPAVPPL 389 (444)
T ss_pred CceEeeCCCCCCC
Confidence 3344556666554
No 160
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.58 E-value=10 Score=39.17 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 353 SNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRM 400 (554)
Q Consensus 353 ~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~ 400 (554)
..|.....++.....++..++.++........+...+..++..++...
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444433333333333344444444333
No 161
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.52 E-value=9.4 Score=40.62 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q 008764 436 TIQSLGKQLKSL 447 (554)
Q Consensus 436 tI~~L~~ql~~L 447 (554)
.|..|+.|++.|
T Consensus 436 ~I~dLqEQlrDl 447 (493)
T KOG0804|consen 436 KITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHhH
Confidence 344444444443
No 162
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.51 E-value=8.2 Score=37.87 Aligned_cols=15 Identities=13% Similarity=-0.157 Sum_probs=6.4
Q ss_pred CCCCccccCCCCCCC
Q 008764 481 PSNVTFSHKRDLNSP 495 (554)
Q Consensus 481 ~~~~~~~~~~~~~~~ 495 (554)
..+.|-.|.-|+.++
T Consensus 294 ~d~gtk~~rs~si~~ 308 (333)
T KOG1853|consen 294 KDLGTKVERSDSILS 308 (333)
T ss_pred ccccccccccCcccc
Confidence 333444444444443
No 163
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.23 E-value=9.8 Score=37.92 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 008764 432 ECQKTIQSLGKQLKSL 447 (554)
Q Consensus 432 e~q~tI~~L~~ql~~L 447 (554)
.++..+..|...|..+
T Consensus 186 ~lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 186 RLQEQLKELKSELEQL 201 (246)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444443333
No 164
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.06 E-value=5.9 Score=34.89 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDA 248 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ 248 (554)
..|..++.++..+..++..+..
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~ 44 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEA 44 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 165
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.01 E-value=22 Score=41.27 Aligned_cols=8 Identities=63% Similarity=0.680 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 008764 389 KCQKLEEE 396 (554)
Q Consensus 389 kl~eLe~e 396 (554)
++.+|+.+
T Consensus 191 kiakLEaE 198 (769)
T PF05911_consen 191 KIAKLEAE 198 (769)
T ss_pred HHHHHHHH
Confidence 33333333
No 166
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.86 E-value=19 Score=40.35 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAEL 281 (554)
Q Consensus 239 Le~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~ 281 (554)
+...+..+-.+...+...+.++......+..+++.++..+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 167
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.79 E-value=8.6 Score=36.12 Aligned_cols=6 Identities=33% Similarity=0.661 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008764 239 LEQKLE 244 (554)
Q Consensus 239 Le~~l~ 244 (554)
+...+.
T Consensus 18 lk~~l~ 23 (177)
T PF13870_consen 18 LKHQLA 23 (177)
T ss_pred HHHHHH
Confidence 333333
No 168
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.77 E-value=20 Score=40.25 Aligned_cols=14 Identities=36% Similarity=0.199 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 008764 428 GKLAECQKTIQSLG 441 (554)
Q Consensus 428 ~kl~e~q~tI~~L~ 441 (554)
..+.+.+.+|.+|.
T Consensus 349 ~~v~e~qtti~~L~ 362 (786)
T PF05483_consen 349 FVVTELQTTICNLK 362 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 169
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.68 E-value=14 Score=38.16 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 330 ATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEM 378 (554)
Q Consensus 330 le~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~ 378 (554)
+-.+++.++.++..++..+..+-...+++..+...++.+.+.|..++..
T Consensus 131 lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 131 LVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555566666666666666666666666644
No 170
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.65 E-value=14 Score=38.15 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 361 EAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQ--QIAKSNAEVKIKQEDLEVAAGKLAECQKTIQ 438 (554)
Q Consensus 361 ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~--~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~ 438 (554)
++.-+..+++.++..+.+-......+...+.++...+.++.++...| ..+..+..+-...++-......+......+.
T Consensus 217 QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 217 QLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444433333333333333333333333333332222 1222333333333333334444444555555
Q ss_pred HHHHHHHHh
Q 008764 439 SLGKQLKSL 447 (554)
Q Consensus 439 ~L~~ql~~L 447 (554)
.|++-+..|
T Consensus 297 kLe~LcRaL 305 (309)
T PF09728_consen 297 KLEKLCRAL 305 (309)
T ss_pred HHHHHHHHH
Confidence 555444444
No 171
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.56 E-value=10 Score=40.97 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 234 HRTAELEQKLERMDAEKVDLEEKLDKMDA 262 (554)
Q Consensus 234 ~el~eLe~~l~~le~ei~eLe~~l~~l~~ 262 (554)
..+..|..+|..++.++..+..+...+..
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~ 187 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKT 187 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHh
Confidence 44455666666666666666655554443
No 172
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=7.9 Score=42.77 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 008764 363 QTMTAKINSLEEEVEM 378 (554)
Q Consensus 363 ~~l~~~i~~Le~el~~ 378 (554)
..+..+|..|+.++..
T Consensus 477 ~~~~~~I~~L~~~L~e 492 (652)
T COG2433 477 RARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444433333
No 173
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.17 E-value=0.15 Score=58.98 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCCccccccCcc
Q 008764 414 AEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRAAL 468 (554)
Q Consensus 414 ~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~~~~~~~~ 468 (554)
..+..++.++..+...+..+...+..|+.++..+.=..+|-.....+..|...|+
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~ 557 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPT 557 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcH
Confidence 3444455667777777777777777777777664211133233333444544444
No 174
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=92.09 E-value=13 Score=36.59 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=8.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 008764 351 VESNVSSMEMEAQTMTAKINSLE 373 (554)
Q Consensus 351 le~~L~~le~ei~~l~~~i~~Le 373 (554)
+..-+..+..+++.++.-|-.|+
T Consensus 262 L~dfm~eLdedVEgmqsTiliLQ 284 (330)
T KOG2991|consen 262 LYDFMEELDEDVEGMQSTILILQ 284 (330)
T ss_pred HHHHHHHHHHHHhcchhhHHHHH
Confidence 33333333333333333333333
No 175
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.84 E-value=17 Score=37.27 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008764 418 IKQEDLEVAAGKLAECQKTIQSL 440 (554)
Q Consensus 418 ~~qeel~~a~~kl~e~q~tI~~L 440 (554)
..|.-|..+.+|++++--+|.+|
T Consensus 198 kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 198 KRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555655555555544
No 176
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.79 E-value=16 Score=39.03 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 385 QITVKCQKLEEEQWRMK 401 (554)
Q Consensus 385 e~e~kl~eLe~el~~~~ 401 (554)
....++.+|++++..+.
T Consensus 432 s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHhHh
Confidence 34444556666665555
No 177
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.65 E-value=38 Score=41.01 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 008764 424 EVAAGKLAECQKTIQSLGKQLKSLATLEDFLI 455 (554)
Q Consensus 424 ~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~ 455 (554)
.....++++..-..-.++.+.+.+........
T Consensus 336 ~~l~~~IAdlRl~~f~~~q~~~~l~~i~~~~~ 367 (1109)
T PRK10929 336 QQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQ 367 (1109)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 44455566666555566666555554443333
No 178
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.49 E-value=13 Score=39.20 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=7.1
Q ss_pred HhHHHHHHHHHHHHHHH
Q 008764 353 SNVSSMEMEAQTMTAKI 369 (554)
Q Consensus 353 ~~L~~le~ei~~l~~~i 369 (554)
..+..++.++..+.-+|
T Consensus 335 qAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 335 QALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 33444444444444333
No 179
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=5.3 Score=44.07 Aligned_cols=40 Identities=33% Similarity=0.624 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 234 HRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ 273 (554)
Q Consensus 234 ~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~ 273 (554)
.++..++..++.++.++..|+..+.++..++..|+.++..
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 180
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=91.05 E-value=27 Score=38.18 Aligned_cols=49 Identities=6% Similarity=0.027 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008764 47 MELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLK 95 (554)
Q Consensus 47 ~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr 95 (554)
.++-++.+.+..+++.++...+.+..+..+--.+-..+...-...+.+|
T Consensus 104 ~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr 152 (570)
T COG4477 104 HEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELR 152 (570)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443333334444
No 181
>PRK11281 hypothetical protein; Provisional
Probab=90.97 E-value=45 Score=40.53 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLD 258 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~ 258 (554)
.+++...++..+++..+..+.+++.....++.
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le 104 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444555555544444444444443
No 182
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.97 E-value=23 Score=37.29 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008764 255 EKLDKM 260 (554)
Q Consensus 255 ~~l~~l 260 (554)
..+.++
T Consensus 220 ~hleqm 225 (359)
T PF10498_consen 220 SHLEQM 225 (359)
T ss_pred HHHHHH
Confidence 333333
No 183
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.88 E-value=26 Score=37.63 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLE 244 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~ 244 (554)
.+|+.++..+..+.+++.
T Consensus 271 ~~i~~lk~~n~~l~e~i~ 288 (622)
T COG5185 271 TDIANLKTQNDNLYEKIQ 288 (622)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555544444433
No 184
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=90.85 E-value=18 Score=35.78 Aligned_cols=9 Identities=0% Similarity=0.272 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 008764 433 CQKTIQSLG 441 (554)
Q Consensus 433 ~q~tI~~L~ 441 (554)
.+.++....
T Consensus 216 ae~~~~~a~ 224 (240)
T PF12795_consen 216 AEQAVEEAE 224 (240)
T ss_pred HHHHHHHHH
Confidence 333333333
No 185
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.58 E-value=30 Score=37.86 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 256 KLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALA 314 (554)
Q Consensus 256 ~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~ 314 (554)
++.....+..+|...|..++..+.+.+..+.++......|-....+....+..++..+.
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 33344444444444444444444444444444444444443333333333333333333
No 186
>PF13514 AAA_27: AAA domain
Probab=90.25 E-value=53 Score=40.19 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 008764 428 GKLAECQKTIQSLGKQ 443 (554)
Q Consensus 428 ~kl~e~q~tI~~L~~q 443 (554)
.+++.....|..+-.+
T Consensus 940 ~e~e~~~a~l~~~~~~ 955 (1111)
T PF13514_consen 940 QEREEAEAELEELAEE 955 (1111)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 187
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.23 E-value=1.1 Score=51.80 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhcccCCccccccC-----cccccCCcCCccccCCCCcccc
Q 008764 427 AGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEFSRA-----ALPIPKTVGESWKLPSNVTFSH 488 (554)
Q Consensus 427 ~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 488 (554)
...+.+++..|..+.+....| .+.|... +-+|--. |-.+.-.+.-..++.|.-...|
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RL---kevf~~k--s~eFr~av~~llGyki~~~~~~~~rl~S~ya~~~ 666 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRL---KEVFKAK--SQEFREAVYSLLGYKIDFMPNGRVRLTSMYAESP 666 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHSEEEEEETTTEEEEEETT-SST
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHhcceeeecCCCeEEEEecccCCC
Confidence 334556666666666555444 4566544 3444333 2233333344456655543333
No 188
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.09 E-value=19 Score=34.94 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008764 302 MEAEKA 307 (554)
Q Consensus 302 le~ele 307 (554)
++..+.
T Consensus 103 l~~~~~ 108 (221)
T PF04012_consen 103 LEQQLD 108 (221)
T ss_pred HHHHHH
Confidence 333333
No 189
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.02 E-value=0.09 Score=60.59 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008764 355 VSSMEMEAQTMTAKINSLEEEV 376 (554)
Q Consensus 355 L~~le~ei~~l~~~i~~Le~el 376 (554)
+..++.....+......|+.++
T Consensus 334 vk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 334 VKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444333
No 190
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.98 E-value=39 Score=38.25 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=7.4
Q ss_pred CCCcccccccccc
Q 008764 530 INPEKNRNGFAKF 542 (554)
Q Consensus 530 ~~~~~~~~~~~~~ 542 (554)
..++-+|--|++.
T Consensus 453 ~~~~~~r~~~~t~ 465 (916)
T KOG0249|consen 453 VVSEDNRYDKATI 465 (916)
T ss_pred cccccccccCCCC
Confidence 4556666666644
No 191
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.75 E-value=24 Score=35.61 Aligned_cols=9 Identities=0% Similarity=-0.186 Sum_probs=3.4
Q ss_pred hcccCCccc
Q 008764 454 LIDTASIPE 462 (554)
Q Consensus 454 ~~~~~~~~~ 462 (554)
+.+..=+|.
T Consensus 214 yL~v~Lpy~ 222 (302)
T PF10186_consen 214 YLGVPLPYP 222 (302)
T ss_pred HhCCCCCCC
Confidence 333333333
No 192
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.42 E-value=0.11 Score=59.98 Aligned_cols=9 Identities=0% Similarity=0.124 Sum_probs=3.7
Q ss_pred CCCceeccC
Q 008764 174 VNRNLSASS 182 (554)
Q Consensus 174 ~g~~~v~~~ 182 (554)
+|=.+-|+.
T Consensus 119 LgcAV~c~~ 127 (713)
T PF05622_consen 119 LGCAVQCEN 127 (713)
T ss_dssp HHHTTSSST
T ss_pred HHHhhcCcc
Confidence 333444444
No 193
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=37 Score=37.18 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDA 248 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ 248 (554)
+|+..+.+++.|.+.+..+..
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~ 352 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQA 352 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 194
>PF14992 TMCO5: TMCO5 family
Probab=89.23 E-value=27 Score=35.29 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch
Q 008764 428 GKLAECQKTIQSLGKQLKSLATL 450 (554)
Q Consensus 428 ~kl~e~q~tI~~L~~ql~~L~~~ 450 (554)
.++++ ++.+.-|++++......
T Consensus 161 ~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 161 RRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHH-HHHHHHHHHHHHHHhch
Confidence 55556 55566677766655543
No 195
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.97 E-value=25 Score=37.14 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=8.4
Q ss_pred CCccccCCCCccccCCC
Q 008764 475 GESWKLPSNVTFSHKRD 491 (554)
Q Consensus 475 ~~~~~~~~~~~~~~~~~ 491 (554)
-..|+.|.. -|+|.+|
T Consensus 173 ~h~gev~~v-~~l~~sd 188 (459)
T KOG0288|consen 173 AHEGEVHDV-EFLRNSD 188 (459)
T ss_pred cccccccee-EEccCcc
Confidence 355666653 3455544
No 196
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.83 E-value=31 Score=35.58 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 370 NSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQ--QIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSL 440 (554)
Q Consensus 370 ~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~--~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L 440 (554)
..+...-..++..+.-+..++.+++..+..-+.-+..+ ..+.....++.+..+-.....+.+.|..+|..+
T Consensus 205 ~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m 277 (309)
T PF09728_consen 205 QTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM 277 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333333444444555555555555544433311111 122333333434334444444555555444433
No 197
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=88.78 E-value=40 Score=36.79 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=33.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008764 34 KLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRA 101 (554)
Q Consensus 34 rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~ 101 (554)
+..-++.....|..++..+.. .++..+.+.-.+....+..-..++.--.+..+|+..+...
T Consensus 14 ~~~Ql~~~~~~lqaev~~lr~-------~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~ 74 (531)
T PF15450_consen 14 RWKQLEQWVAELQAEVACLRG-------HKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQR 74 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445555555555555544 3344445555555555555556666666777777766654
No 198
>PF13166 AAA_13: AAA domain
Probab=88.77 E-value=51 Score=37.98 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 422 DLEVAAGKLAECQKTIQSLGKQLKSL 447 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~L 447 (554)
++..+...+......+..+...+..+
T Consensus 446 ~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 446 EIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33334444443444444444444444
No 199
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=88.66 E-value=42 Score=36.82 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008764 337 LQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEV 416 (554)
Q Consensus 337 l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~l 416 (554)
...++..+-..++.++.+...+..+...+..++...+.+.+........+..++..|++++...+. ..+.++
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~--------NYE~QL 489 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR--------NYEEQL 489 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHH
Confidence 345566666666666677777777777777777777777666666666677777777777766553 244455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 417 KIKQEDLEVAAGKLAECQKTIQSLG 441 (554)
Q Consensus 417 k~~qeel~~a~~kl~e~q~tI~~L~ 441 (554)
..+.+-|..+..+|..-..+|..|+
T Consensus 490 s~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 490 SMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555566666666666666666654
No 200
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.53 E-value=31 Score=35.26 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 386 ITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 386 ~e~kl~eLe~el~~~~~ 402 (554)
....+..|..++.+++.
T Consensus 227 ~~shI~~Lr~EV~RLR~ 243 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQ 243 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 201
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=88.36 E-value=23 Score=33.46 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCC
Q 008764 419 KQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTAS 459 (554)
Q Consensus 419 ~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~ 459 (554)
+++++.....||.+++.....|-+.-..|..++ +..|...
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElc-l~LDeer 145 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRENLELKELC-LYLDEER 145 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhccc
Confidence 455777788888888777777777777776555 4444444
No 202
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.34 E-value=53 Score=37.61 Aligned_cols=7 Identities=29% Similarity=0.135 Sum_probs=3.3
Q ss_pred cccCCCC
Q 008764 486 FSHKRDL 492 (554)
Q Consensus 486 ~~~~~~~ 492 (554)
.++|.|+
T Consensus 657 ~~~kq~s 663 (861)
T PF15254_consen 657 TLSKQDS 663 (861)
T ss_pred ccccccc
Confidence 4445554
No 203
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.34 E-value=50 Score=37.39 Aligned_cols=11 Identities=27% Similarity=0.848 Sum_probs=7.3
Q ss_pred ccccccccccc
Q 008764 539 FAKFFSRTKNG 549 (554)
Q Consensus 539 ~~~~~~~~~~~ 549 (554)
.|+||-++++|
T Consensus 526 i~r~f~kk~~~ 536 (916)
T KOG0249|consen 526 IGRLFGKKENG 536 (916)
T ss_pred HHHHHhhhccc
Confidence 56777776665
No 204
>PLN02939 transferase, transferring glycosyl groups
Probab=88.05 E-value=65 Score=38.34 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 008764 385 QITVKCQKLEEEQWR 399 (554)
Q Consensus 385 e~e~kl~eLe~el~~ 399 (554)
++..++.+|+.-+.+
T Consensus 328 ~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 328 DLRDKVDKLEASLKE 342 (977)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 205
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=87.90 E-value=45 Score=36.33 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 422 DLEVAAGKLAECQKTIQSLGKQLKSL 447 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~L 447 (554)
++..+..++...+..+..+...+...
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45555556666666565555555443
No 206
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.65 E-value=7.5 Score=37.44 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=8.4
Q ss_pred ceeccCchh---hcchhh
Q 008764 177 NLSASSPEI---DLMDDF 191 (554)
Q Consensus 177 ~~v~~~~~~---~l~~~~ 191 (554)
.+++.+.|. .|.+.|
T Consensus 61 vlIATDaD~~GReLA~kf 78 (290)
T COG4026 61 VLIATDADRVGRELAEKF 78 (290)
T ss_pred EEEeecCcchhHHHHHHH
Confidence 455666655 555555
No 207
>PF13166 AAA_13: AAA domain
Probab=87.30 E-value=62 Score=37.28 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 422 DLEVAAGKLAECQKTIQSLGKQLKSL 447 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~L 447 (554)
.+..+...+......|..|..++...
T Consensus 432 ~~~~~~~~~~~~~~~i~~l~~~~~~~ 457 (712)
T PF13166_consen 432 KLKKAKEEIKKIEKEIKELEAQLKNT 457 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555566666555433
No 208
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.59 E-value=37 Score=34.02 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 008764 422 DLEVAAGKLAECQKTI 437 (554)
Q Consensus 422 el~~a~~kl~e~q~tI 437 (554)
+|+.-..||+-+-..+
T Consensus 153 DINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 153 DINIQNKKLESLLQSM 168 (305)
T ss_pred hhhhhHhHHHHHHHHH
Confidence 4444445554444433
No 209
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.48 E-value=23 Score=36.34 Aligned_cols=55 Identities=22% Similarity=0.345 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE 283 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~ 283 (554)
+..+...+.+++.++..+--....|.++-..+..+++.|+..+.+++..+..+..
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~r 133 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQR 133 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777666655544444444444444444444444444444443333
No 210
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=86.37 E-value=68 Score=36.80 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 354 NVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 354 ~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
....+.........++..|..++..++.....+...+..+..+..+...
T Consensus 228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~ 276 (670)
T KOG0239|consen 228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALK 276 (670)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445555555555555555555555555555544443
No 211
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=86.09 E-value=21 Score=30.72 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 231 AMIHRTAELEQKLERMDAEKVDLEEK 256 (554)
Q Consensus 231 ~l~~el~eLe~~l~~le~ei~eLe~~ 256 (554)
.+......+..++..+..++..++..
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~ 32 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQ 32 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443333333
No 212
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.86 E-value=64 Score=35.97 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 236 TAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA 276 (554)
Q Consensus 236 l~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~ 276 (554)
....-..|.++..++..+....++...+++-++-++++++.
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~ 199 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE 199 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556666666666666666777777777777766654
No 213
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.57 E-value=27 Score=35.82 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKA 279 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~ 279 (554)
++..+.++++......-...++..+...+-=+++-|...+.+++..+..+..++.
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544444444444444444444444444444444444444444443
No 214
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.24 E-value=56 Score=34.78 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 303 EAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERAL 382 (554)
Q Consensus 303 e~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~ 382 (554)
+.+..++...+..+....+.+..........|+.+..++-..++.....-..|...+.+....+.-+..+..++...+..
T Consensus 310 eeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 310 EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444445555555544444444444444444444444444444454444443332
Q ss_pred HHHHH--------HHHHHHHHHHHHHHH
Q 008764 383 SMQIT--------VKCQKLEEEQWRMKQ 402 (554)
Q Consensus 383 ~~e~e--------~kl~eLe~el~~~~~ 402 (554)
...+. .+..+++.++.++++
T Consensus 390 kl~~a~p~rgrsSaRe~eleqevkrLrq 417 (502)
T KOG0982|consen 390 KLVLANPVRGRSSAREIELEQEVKRLRQ 417 (502)
T ss_pred HHHhhccccCchhHHHHHHHHHHHHhcc
Confidence 22221 444555555555554
No 215
>PLN02939 transferase, transferring glycosyl groups
Probab=85.08 E-value=92 Score=37.14 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 008764 363 QTMTAKINSLEEEVEM 378 (554)
Q Consensus 363 ~~l~~~i~~Le~el~~ 378 (554)
..++.+++.|+.-++.
T Consensus 327 ~~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 327 QDLRDKVDKLEASLKE 342 (977)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4556666666655543
No 216
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.91 E-value=39 Score=32.76 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 008764 292 KAKLEEKIEK 301 (554)
Q Consensus 292 l~~Le~ele~ 301 (554)
...++.++..
T Consensus 53 ~~~le~~~~~ 62 (221)
T PF04012_consen 53 QKRLERKLDE 62 (221)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 217
>PRK09343 prefoldin subunit beta; Provisional
Probab=84.01 E-value=29 Score=30.52 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLD 258 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~ 258 (554)
.+++..-..+..+..++..+..++..++..+.
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~ 38 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELR 38 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 218
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=83.99 E-value=1.1e+02 Score=37.19 Aligned_cols=16 Identities=6% Similarity=0.246 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 008764 422 DLEVAAGKLAECQKTI 437 (554)
Q Consensus 422 el~~a~~kl~e~q~tI 437 (554)
.+......+.......
T Consensus 861 ~~~~~~~~~~~~~~~~ 876 (1047)
T PRK10246 861 QQQALMQQIAQATQQV 876 (1047)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 219
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.93 E-value=50 Score=33.16 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA 262 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~ 262 (554)
-|..|+.++++-+..|+.-+.+|.+|+.++.+++.
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45566666666666665555555555555444443
No 220
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.71 E-value=67 Score=34.45 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 008764 224 SLRAELEAMIHRTAELE---QKLERMDAEKVDLEEKLDKMDAE 263 (554)
Q Consensus 224 ~l~~ei~~l~~el~eLe---~~l~~le~ei~eLe~~l~~l~~e 263 (554)
+...+++.+.+..++.. ....+....+..++.....+...
T Consensus 228 se~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~ 270 (521)
T KOG1937|consen 228 SEEEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQ 270 (521)
T ss_pred ccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455666666655442 22333333444444444443333
No 221
>PRK04406 hypothetical protein; Provisional
Probab=83.35 E-value=13 Score=29.89 Aligned_cols=50 Identities=8% Similarity=0.023 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008764 50 LIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMAC 99 (554)
Q Consensus 50 ~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~ 99 (554)
..+...+..++..+.+.+.+++.++.-..+.++.|++|..+|+.|..-+.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888899999999999999999999999999988865443
No 222
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=82.97 E-value=42 Score=31.56 Aligned_cols=34 Identities=26% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 367 AKINSLEEEVEMERALSMQITVKCQKLEEEQWRM 400 (554)
Q Consensus 367 ~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~ 400 (554)
.+++.|+.+...+.....-++.++..|+..+..-
T Consensus 120 ekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE 153 (178)
T PF14073_consen 120 EKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE 153 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666666666655543
No 223
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=82.94 E-value=70 Score=34.08 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=8.7
Q ss_pred hhhhccccccCCCcee
Q 008764 164 ELDQFKNEKAVNRNLS 179 (554)
Q Consensus 164 ~~~~~~~~~~~g~~~v 179 (554)
|.+-|+..++-|.++.
T Consensus 153 yve~fk~~kv~G~alP 168 (575)
T KOG4403|consen 153 YVEAFKAKKVDGKALP 168 (575)
T ss_pred HHHHHHhccCCccccc
Confidence 3344444677776543
No 224
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.93 E-value=58 Score=37.81 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 241 QKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE 277 (554)
Q Consensus 241 ~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~e 277 (554)
.+.......+.-+..++..+..++...+..++.+..+
T Consensus 260 ~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 260 RQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555666666666666666666665543
No 225
>PRK11519 tyrosine kinase; Provisional
Probab=82.67 E-value=73 Score=36.95 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 246 MDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE 277 (554)
Q Consensus 246 le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~e 277 (554)
....+.-++.++..+..++...+..++.+..+
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666543
No 226
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.54 E-value=72 Score=33.98 Aligned_cols=9 Identities=44% Similarity=0.449 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 008764 432 ECQKTIQSL 440 (554)
Q Consensus 432 e~q~tI~~L 440 (554)
+++.+|..+
T Consensus 428 elngtilTl 436 (502)
T KOG0982|consen 428 ELNGTILTL 436 (502)
T ss_pred hhhhhhhhH
Confidence 333344333
No 227
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=82.31 E-value=37 Score=30.45 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKM 260 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l 260 (554)
+++.+...+..+...+..+...+..+...+.++
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444444444433
No 228
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=81.92 E-value=1e+02 Score=35.35 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhcccCC
Q 008764 428 GKLAECQKTIQSLGKQLKSLATLEDFLIDTAS 459 (554)
Q Consensus 428 ~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~ 459 (554)
..-..|..+|..|...+.-.....-++.+..+
T Consensus 300 ~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~ 331 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIRVFCRVRPLLPSEKQ 331 (670)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecCCCccccc
Confidence 44556777788888888877766666665555
No 229
>PF14992 TMCO5: TMCO5 family
Probab=81.75 E-value=62 Score=32.70 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKM 260 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l 260 (554)
.+.+.+.+..+.+-.++...+..+..|+.++..+
T Consensus 11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555554443
No 230
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.43 E-value=62 Score=32.50 Aligned_cols=9 Identities=22% Similarity=0.135 Sum_probs=3.5
Q ss_pred hHHHhhhhh
Q 008764 156 SWASALIAE 164 (554)
Q Consensus 156 ~~a~~li~~ 164 (554)
+|....|.+
T Consensus 57 sftl~~~~~ 65 (269)
T PF05278_consen 57 SFTLSEIEC 65 (269)
T ss_pred cccHHHHHH
Confidence 333333433
No 231
>PRK09343 prefoldin subunit beta; Provisional
Probab=81.12 E-value=38 Score=29.79 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 233 IHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQM 274 (554)
Q Consensus 233 ~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l 274 (554)
...+...-..++.+..++..+....+.+...+.+...-+.++
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455444455544444444444433333
No 232
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.09 E-value=42 Score=32.62 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008764 327 LREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLE 373 (554)
Q Consensus 327 i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le 373 (554)
+..++.+++....+++.+++....+..+.+.+..+...+-.+...|+
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444443333333
No 233
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.01 E-value=33 Score=31.85 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008764 295 LEEKIEKMEAEKAELEMAL 313 (554)
Q Consensus 295 Le~ele~le~eleele~el 313 (554)
+..++..+..+...+..++
T Consensus 84 L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 234
>PRK02119 hypothetical protein; Provisional
Probab=80.88 E-value=11 Score=30.16 Aligned_cols=51 Identities=6% Similarity=0.042 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008764 49 LLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMAC 99 (554)
Q Consensus 49 l~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~ 99 (554)
+..+...+..++..+.+.+.+++.++.-..+.++.|++|..+++.|+.-+.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888899999999999999999999999999888865443
No 235
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.73 E-value=8.2 Score=30.37 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008764 52 QSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRA 101 (554)
Q Consensus 52 l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~ 101 (554)
+...+..++..+.+.+.+++.++.-..+.+++|++|+.+++.|+.-++..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888888999999999999999999999999999888655543
No 236
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.69 E-value=27 Score=27.81 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 237 AELEQKLERMDAEKVDLEEKLDKMDAEKAEL 267 (554)
Q Consensus 237 ~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l 267 (554)
..|+.++..+-..|..|+.++..+..+...+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444444444444443333
No 237
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.32 E-value=64 Score=31.90 Aligned_cols=11 Identities=27% Similarity=0.307 Sum_probs=5.3
Q ss_pred HHHHHHHHhhc
Q 008764 439 SLGKQLKSLAT 449 (554)
Q Consensus 439 ~L~~ql~~L~~ 449 (554)
.++..+.++..
T Consensus 262 alesklascrn 272 (333)
T KOG1853|consen 262 ALESKLASCRN 272 (333)
T ss_pred hhHHHHHHHhh
Confidence 34555555543
No 238
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.02 E-value=41 Score=29.51 Aligned_cols=28 Identities=29% Similarity=0.467 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 230 EAMIHRTAELEQKLERMDAEKVDLEEKL 257 (554)
Q Consensus 230 ~~l~~el~eLe~~l~~le~ei~eLe~~l 257 (554)
++.-.+...+..++..+..+...++..+
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL 36 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQL 36 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333333333333
No 239
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=79.78 E-value=41 Score=29.39 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCC
Q 008764 418 IKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTAS 459 (554)
Q Consensus 418 ~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~ 459 (554)
.+..+|..+...+..++..|..++..+..+.+..+||..+-.
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344578888899999999999999999999999999887644
No 240
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.57 E-value=17 Score=28.91 Aligned_cols=49 Identities=14% Similarity=0.008 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008764 52 QSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACR 100 (554)
Q Consensus 52 l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k 100 (554)
+...+..++..+.+.+.+++.++.-..+.++.|++|..+++.|..-+..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567777788888888889999999999999999999998888754443
No 241
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=79.35 E-value=47 Score=29.78 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 236 TAELEQKLERMDAEKVDLEEKLDKM 260 (554)
Q Consensus 236 l~eLe~~l~~le~ei~eLe~~l~~l 260 (554)
+..+...+..+...+..+...+..+
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l 32 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEEL 32 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 242
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=78.84 E-value=0.5 Score=41.04 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=29.8
Q ss_pred chhhHHHhhhhh-hhhccc--cccCCCceeccCchh
Q 008764 153 CSDSWASALIAE-LDQFKN--EKAVNRNLSASSPEI 185 (554)
Q Consensus 153 ~~~~~a~~li~~-~~~~~~--~~~~g~~~v~~~~~~ 185 (554)
+...|+.++|.| ++.|++ .++||++++|+|++.
T Consensus 80 ~~~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~ 115 (120)
T PF06470_consen 80 GGAGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEE 115 (120)
T ss_dssp TSEEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHH
T ss_pred cchHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHH
Confidence 456899999999 789998 999999999999886
No 243
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=78.50 E-value=98 Score=32.99 Aligned_cols=13 Identities=23% Similarity=0.412 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 008764 239 LEQKLERMDAEKV 251 (554)
Q Consensus 239 Le~~l~~le~ei~ 251 (554)
|...+.++..++.
T Consensus 135 L~~~l~~~~eQl~ 147 (384)
T PF03148_consen 135 LQRTLEQAEEQLR 147 (384)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 244
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.47 E-value=1.3e+02 Score=34.27 Aligned_cols=17 Identities=24% Similarity=0.310 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 386 ITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 386 ~e~kl~eLe~el~~~~~ 402 (554)
...++..|+.++.+++.
T Consensus 557 ~k~~~e~LqaE~~~lk~ 573 (716)
T KOG4593|consen 557 KKNRLEELQAELERLKE 573 (716)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555554
No 245
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.41 E-value=13 Score=39.07 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=7.6
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 008764 37 FLEKENSALKMELLIQSEEL 56 (554)
Q Consensus 37 ~~eke~~~l~~el~~l~~el 56 (554)
.+..+...++.++....-.|
T Consensus 12 et~~~V~~m~~~L~~~~~~L 31 (344)
T PF12777_consen 12 ETEEQVEEMQEELEEKQPEL 31 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 246
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=78.37 E-value=98 Score=32.95 Aligned_cols=21 Identities=38% Similarity=0.284 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 008764 31 LFEKLEFLEKENSALKMELLI 51 (554)
Q Consensus 31 l~~rl~~~eke~~~l~~el~~ 51 (554)
+..|+..+..|+.+|+.++..
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~ 112 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEK 112 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 247
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.09 E-value=1e+02 Score=33.08 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=5.2
Q ss_pred hhccc-cccCCCc
Q 008764 166 DQFKN-EKAVNRN 177 (554)
Q Consensus 166 ~~~~~-~~~~g~~ 177 (554)
.+|.. ..+||.-
T Consensus 171 ehfqq~~~~l~dp 183 (521)
T KOG1937|consen 171 EHFQQCNAVLNDP 183 (521)
T ss_pred HHHHHHHHHhcCc
Confidence 34443 4445443
No 248
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=78.02 E-value=1.1e+02 Score=35.50 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008764 266 ELEEKLEQMDAEKAELEEK 284 (554)
Q Consensus 266 ~l~~~ie~l~~el~~~e~e 284 (554)
-+..++..+..++...+..
T Consensus 271 fL~~qL~~l~~~L~~aE~~ 289 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEK 289 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 249
>PRK04325 hypothetical protein; Provisional
Probab=77.33 E-value=11 Score=30.15 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008764 51 IQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKA 96 (554)
Q Consensus 51 ~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~ 96 (554)
.+...+..++..+.+.+.+++.++.-..+.++.|++|..+|+.|..
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888888999999999999999999999999888854
No 250
>PRK00736 hypothetical protein; Provisional
Probab=77.13 E-value=9.6 Score=29.96 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 008764 53 SEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMA 98 (554)
Q Consensus 53 ~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~ 98 (554)
...+..++..+.+.+.+++.++.-....++.|++|..+|+.|..-+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888888889999999999999999999999988886433
No 251
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.77 E-value=34 Score=38.00 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKL 257 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l 257 (554)
.++..+++++..++.++..+..++..++..+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444444333
No 252
>PRK10869 recombination and repair protein; Provisional
Probab=76.66 E-value=1.3e+02 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008764 384 MQITVKCQKLEEEQWRMK 401 (554)
Q Consensus 384 ~e~e~kl~eLe~el~~~~ 401 (554)
.++-....+++.++..+.
T Consensus 320 ~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 320 EELPQHHQQLLEEQQQLD 337 (553)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444444443
No 253
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=76.64 E-value=1e+02 Score=32.30 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 249 EKVDLEEKLDKMDAEKAELEEKLEQMDA 276 (554)
Q Consensus 249 ei~eLe~~l~~l~~e~~~l~~~ie~l~~ 276 (554)
.+.-++.++..+..++...+..+..++.
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555544
No 254
>PRK00295 hypothetical protein; Provisional
Probab=76.58 E-value=12 Score=29.51 Aligned_cols=44 Identities=7% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008764 53 SEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKA 96 (554)
Q Consensus 53 ~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~ 96 (554)
...+..++..+.+.+.+++.++......++.|+.|..+|+.|..
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777888888899999999999999999999999888864
No 255
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.09 E-value=1.3e+02 Score=33.32 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008764 51 IQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKA 96 (554)
Q Consensus 51 ~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~ 96 (554)
.+...|..++++.-++.+-.-.+.++.......+++++..|.-|+.
T Consensus 498 ~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~ 543 (852)
T KOG4787|consen 498 SDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAA 543 (852)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHH
Confidence 3445566778888888888888888888888889999999888873
No 256
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=74.66 E-value=53 Score=27.94 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008764 236 TAELEQKLERMDAEKVDLEEK 256 (554)
Q Consensus 236 l~eLe~~l~~le~ei~eLe~~ 256 (554)
++.+...+..+..++..+...
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~ 28 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQ 28 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333
No 257
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=73.29 E-value=2.1e+02 Score=34.26 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=14.4
Q ss_pred HHHHHHHhhchhhhhcccCCcc
Q 008764 440 LGKQLKSLATLEDFLIDTASIP 461 (554)
Q Consensus 440 L~~ql~~L~~~~~~~~~~~~~~ 461 (554)
.+++...+.+..+||...-+.|
T Consensus 1300 a~Kqk~di~kl~~~lv~kQKAY 1321 (1439)
T PF12252_consen 1300 AQKQKEDIVKLNDFLVEKQKAY 1321 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 4455556667788887776654
No 258
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.26 E-value=1.4e+02 Score=32.04 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 271 LEQMDAEKAELEEKLEKMDAEKAKLEE----KIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE 346 (554)
Q Consensus 271 ie~l~~el~~~e~el~~l~~kl~~Le~----ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~ 346 (554)
+..+..++.++......+...+..|.. ++.-+...+.+..-....+++++.+. +.--..++..|+.+|..+++
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~---~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDL---TELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHH
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHH
Q 008764 347 SKR-IVESNVSSMEMEAQTMTAKINSLE 373 (554)
Q Consensus 347 ~~~-~le~~L~~le~ei~~l~~~i~~Le 373 (554)
... ....+...+..-++.++.+|..++
T Consensus 291 K~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 291 KMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 259
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.98 E-value=1.5e+02 Score=32.38 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAE 280 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~ 280 (554)
.+.|..+++.-.+.+....-.|+.+.+.+.+|.....+.-.+|...+.+..+
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~ 387 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVE 387 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3444445444444444444444445455444443333333333333333333
No 260
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=72.45 E-value=80 Score=29.07 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhchhhhhcccCC
Q 008764 437 IQSLGKQLKSLATLEDFLIDTAS 459 (554)
Q Consensus 437 I~~L~~ql~~L~~~~~~~~~~~~ 459 (554)
+.-|..++..|.....+|.....
T Consensus 118 ~~Gldeqi~~lkes~~yLF~~~~ 140 (155)
T PF06810_consen 118 LKGLDEQIKALKESDPYLFEEEE 140 (155)
T ss_pred cccHHHHHHHHHhcCchhccCCc
Confidence 56677777777766655555544
No 261
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.22 E-value=51 Score=36.62 Aligned_cols=10 Identities=40% Similarity=1.036 Sum_probs=7.6
Q ss_pred ccCCcCCccc
Q 008764 470 IPKTVGESWK 479 (554)
Q Consensus 470 ~~~~~~~~~~ 479 (554)
+.+..||-|+
T Consensus 230 V~Q~TGeDW~ 239 (525)
T TIGR02231 230 IRQSTGEDWS 239 (525)
T ss_pred EEeCCCCCCC
Confidence 4578889995
No 262
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=72.04 E-value=89 Score=29.43 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 008764 365 MTAKINSLEEEVEME 379 (554)
Q Consensus 365 l~~~i~~Le~el~~~ 379 (554)
...+|..|+..+..+
T Consensus 139 ae~Ki~~LE~KL~eE 153 (178)
T PF14073_consen 139 AETKIKELEEKLQEE 153 (178)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 263
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.02 E-value=1.8e+02 Score=33.04 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 008764 324 ELQLREATMQLE 335 (554)
Q Consensus 324 e~~i~ele~ele 335 (554)
...+..+++++.
T Consensus 185 ~s~l~~~eke~~ 196 (716)
T KOG4593|consen 185 HSELQNEEKELD 196 (716)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 264
>PRK10698 phage shock protein PspA; Provisional
Probab=71.75 E-value=1e+02 Score=30.10 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 008764 365 MTAKINSL 372 (554)
Q Consensus 365 l~~~i~~L 372 (554)
+..+|..+
T Consensus 171 mE~ki~~~ 178 (222)
T PRK10698 171 FERRIDQM 178 (222)
T ss_pred HHHHHHHH
Confidence 33333333
No 265
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=71.68 E-value=1.2e+02 Score=30.65 Aligned_cols=10 Identities=40% Similarity=0.504 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 008764 370 NSLEEEVEME 379 (554)
Q Consensus 370 ~~Le~el~~~ 379 (554)
+.++.++...
T Consensus 228 EklE~EL~~l 237 (267)
T PF10234_consen 228 EKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 266
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.26 E-value=85 Score=31.33 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 356 SSMEMEAQTMTAKINSLEEEVEMERA 381 (554)
Q Consensus 356 ~~le~ei~~l~~~i~~Le~el~~~~~ 381 (554)
--+..+.+.++.+..+|+.++.....
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~ 107 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQ 107 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544433
No 267
>PF15294 Leu_zip: Leucine zipper
Probab=71.22 E-value=1.2e+02 Score=30.67 Aligned_cols=144 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 232 MIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKL--EKMDAEKAKLEEKIEKMEAEKAEL 309 (554)
Q Consensus 232 l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el--~~l~~kl~~Le~ele~le~eleel 309 (554)
+..++..|..+-..+..++..++........+...++..+.+++.........- ..-...+..|+..+..+..+++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 310 EMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVE---SNVSSMEMEAQTMTAKINSLEEEVEM 378 (554)
Q Consensus 310 e~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le---~~L~~le~ei~~l~~~i~~Le~el~~ 378 (554)
+.........++..+......+-..+.++....+.+...- .....+..-+..-..+|..|+..+.+
T Consensus 210 ---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl~k 278 (278)
T PF15294_consen 210 ---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRLAK 278 (278)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHhcC
No 268
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.09 E-value=48 Score=25.97 Aligned_cols=9 Identities=0% Similarity=-0.145 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 008764 383 SMQITVKCQ 391 (554)
Q Consensus 383 ~~e~e~kl~ 391 (554)
+..+..++.
T Consensus 62 ~~~WQerlr 70 (79)
T COG3074 62 QNGWQERLR 70 (79)
T ss_pred HHHHHHHHH
Confidence 333443333
No 269
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=71.02 E-value=1.2e+02 Score=30.51 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhchhhhhccc
Q 008764 437 IQSLGKQLKSLATLEDFLIDT 457 (554)
Q Consensus 437 I~~L~~ql~~L~~~~~~~~~~ 457 (554)
|.+|+..++.+. .+-+.+|.
T Consensus 118 ~seleeKkrkie-eeR~smDl 137 (291)
T KOG4466|consen 118 ISELEEKKRKIE-EERLSMDL 137 (291)
T ss_pred HHHHHHHHHHHH-HHHhhhhh
Confidence 455666666654 33344444
No 270
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=70.98 E-value=53 Score=29.94 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEK 250 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei 250 (554)
..|+.+.++...++..+..+...+
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~ 67 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEI 67 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccc
Confidence 456666666666666665544333
No 271
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.82 E-value=49 Score=25.93 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 237 AELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEK 278 (554)
Q Consensus 237 ~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el 278 (554)
..|+.+++++-.-|.-|..++.++..+.+.+...........
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~r 48 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 345555555555555555555555555554444444433333
No 272
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=70.74 E-value=1.6e+02 Score=31.95 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhceeeecCCCCCccccCCcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 194 MEQLAAMPNNKSGKHVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ 273 (554)
Q Consensus 194 merlvtl~~t~~G~~~~sG~~tGG~~~~~~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~ 273 (554)
|+||-+- .+.+|-.-.|+......+.-||..++..++.....|..+++...++..++..+..--...++.+.+
T Consensus 578 ~eRLkmE-------lst~kDlekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhd 650 (790)
T PF07794_consen 578 IERLKME-------LSTSKDLEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHD 650 (790)
T ss_pred hhhhhee-------eccccchhhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 274 MDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVE---ASELQLREATMQLEELQRELNLVN 345 (554)
Q Consensus 274 l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~---~~e~~i~ele~ele~l~~el~~l~ 345 (554)
...++...=..+-...+++.-..++.-.++..-.+++..+.-+..-.. .+..+-..+..++.+++......+
T Consensus 651 aK~ElA~~Y~klLagiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~ck~ke 725 (790)
T PF07794_consen 651 AKVELAAAYSKLLAGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEARCKSKE 725 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhhhhhcc
No 273
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=70.62 E-value=1.6e+02 Score=31.64 Aligned_cols=10 Identities=20% Similarity=0.062 Sum_probs=4.8
Q ss_pred ccccCCCCCC
Q 008764 485 TFSHKRDLNS 494 (554)
Q Consensus 485 ~~~~~~~~~~ 494 (554)
.|..+|+.++
T Consensus 383 ~e~~~k~~~~ 392 (447)
T KOG2751|consen 383 DELEKKDTSF 392 (447)
T ss_pred HHHHhcCccc
Confidence 3445555543
No 274
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.23 E-value=52 Score=25.96 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=7.3
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 008764 353 SNVSSMEMEAQTMTAKINSL 372 (554)
Q Consensus 353 ~~L~~le~ei~~l~~~i~~L 372 (554)
.++...-.++..|..++..+
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 275
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=69.93 E-value=1.2e+02 Score=29.97 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 008764 229 LEAMIHRTAELEQKL 243 (554)
Q Consensus 229 i~~l~~el~eLe~~l 243 (554)
...|++-++....++
T Consensus 73 ~~~LeeliNkWs~el 87 (254)
T KOG2196|consen 73 YKTLEELINKWSLEL 87 (254)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 276
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=69.69 E-value=1.3e+02 Score=30.28 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=17.1
Q ss_pred ccccccccccccccccccc
Q 008764 535 NRNGFAKFFSRTKNGIQLE 553 (554)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~ 553 (554)
=|+|-|-|-|+..+.|+|+
T Consensus 246 lR~GIa~rHP~D~~kIRL~ 264 (268)
T PF11802_consen 246 LRSGIALRHPEDPSKIRLE 264 (268)
T ss_pred HHcCCeeeCCCCcccccch
Confidence 4899999999999999985
No 277
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.84 E-value=1.1e+02 Score=29.21 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008764 327 LREATMQLEELQRELNLV 344 (554)
Q Consensus 327 i~ele~ele~l~~el~~l 344 (554)
+.+++.++.+++.+...+
T Consensus 133 i~~Le~ki~el~~~~~~~ 150 (190)
T PF05266_consen 133 IKELEMKILELQRQAAKL 150 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 278
>PRK10698 phage shock protein PspA; Provisional
Probab=68.44 E-value=1.2e+02 Score=29.60 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008764 426 AAGKLAECQKTIQSLGKQLKS 446 (554)
Q Consensus 426 a~~kl~e~q~tI~~L~~ql~~ 446 (554)
+...++..+..|..++.+...
T Consensus 164 a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 164 AMARFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 334444444445554444443
No 279
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.84 E-value=67 Score=27.50 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLE 244 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~ 244 (554)
++..+.+++......+.
T Consensus 36 ~~~~l~~~~~~~~~Rl~ 52 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQ 52 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34443333333333333
No 280
>PRK00846 hypothetical protein; Provisional
Probab=66.78 E-value=28 Score=28.07 Aligned_cols=49 Identities=16% Similarity=-0.021 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008764 51 IQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMAC 99 (554)
Q Consensus 51 ~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~ 99 (554)
.+...+..++..+.+.+.+++.++......++.|++|..+++.+..-+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777778888888888888888888899999888887764333
No 281
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.75 E-value=2.1e+02 Score=31.60 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 320 VEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWR 399 (554)
Q Consensus 320 l~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~ 399 (554)
+..+-.++.....+...+..+...+...+...+.....+..++......+..|+.++...+. .++.++.-+.+.+..
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~---NYE~QLs~MSEHLas 498 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR---NYEEQLSMMSEHLAS 498 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHH
Confidence 33333444444444444455555555555555555556666666666666666666654432 344444555555554
Q ss_pred HHH
Q 008764 400 MKQ 402 (554)
Q Consensus 400 ~~~ 402 (554)
+..
T Consensus 499 mNe 501 (518)
T PF10212_consen 499 MNE 501 (518)
T ss_pred HHH
Confidence 444
No 282
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.69 E-value=2.5e+02 Score=32.48 Aligned_cols=8 Identities=38% Similarity=0.260 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 008764 441 GKQLKSLA 448 (554)
Q Consensus 441 ~~ql~~L~ 448 (554)
..=|+.|.
T Consensus 596 MsYLkkLE 603 (861)
T PF15254_consen 596 MSYLKKLE 603 (861)
T ss_pred HHHHHhhc
Confidence 33344443
No 283
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.33 E-value=1.7e+02 Score=30.53 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 358 MEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWR 399 (554)
Q Consensus 358 le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~ 399 (554)
....+..++..+...+..+...+....++..++..++.++..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444433
No 284
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=66.18 E-value=1e+02 Score=27.96 Aligned_cols=58 Identities=10% Similarity=0.101 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008764 304 AEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEME 361 (554)
Q Consensus 304 ~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~e 361 (554)
.++.-+...|.....++..+...+...+.++.......++.+..+..+-..|..+-.+
T Consensus 84 kEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~e 141 (159)
T PF04949_consen 84 KEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSE 141 (159)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444445555555444444444433
No 285
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=65.81 E-value=1.1e+02 Score=27.96 Aligned_cols=12 Identities=8% Similarity=0.271 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 008764 358 MEMEAQTMTAKI 369 (554)
Q Consensus 358 le~ei~~l~~~i 369 (554)
++..++.+...+
T Consensus 99 l~k~~~~l~~~~ 110 (145)
T COG1730 99 LKKRIEELEKAI 110 (145)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 286
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.54 E-value=63 Score=24.85 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 339 RELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEM 378 (554)
Q Consensus 339 ~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~ 378 (554)
.+|..+....-.++.+|...+.....+..+|..|+.+++.
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444433
No 287
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=64.44 E-value=1.5e+02 Score=31.85 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 312 ALAKSQDSVEASELQLREATMQLEELQRELNLVNES 347 (554)
Q Consensus 312 el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~ 347 (554)
.+..|..-+--+..-+......++.++.+|......
T Consensus 487 ~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse 522 (583)
T KOG3809|consen 487 KLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSE 522 (583)
T ss_pred HHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 333333333333333444444444555555444433
No 288
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=64.42 E-value=62 Score=35.70 Aligned_cols=10 Identities=50% Similarity=0.444 Sum_probs=5.1
Q ss_pred CCCCCCcccc
Q 008764 527 SNQINPEKNR 536 (554)
Q Consensus 527 ~~~~~~~~~~ 536 (554)
.||+-+||+-
T Consensus 320 v~h~~~e~~~ 329 (907)
T KOG2264|consen 320 VNHIAVEKNF 329 (907)
T ss_pred ccccccCccc
Confidence 4555555543
No 289
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=63.06 E-value=1.4e+02 Score=28.42 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008764 255 EKLDKMDAEKAELEEKLEQMDAE 277 (554)
Q Consensus 255 ~~l~~l~~e~~~l~~~ie~l~~e 277 (554)
.-++.|..++.+.+..+......
T Consensus 67 ~iveqLe~ev~EAe~vV~ee~~s 89 (188)
T PF05335_consen 67 QIVEQLEQEVREAEAVVQEEKAS 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333
No 290
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=62.33 E-value=2.9e+02 Score=31.66 Aligned_cols=12 Identities=33% Similarity=0.290 Sum_probs=6.1
Q ss_pred hhhhhhhceeee
Q 008764 189 DDFLEMEQLAAM 200 (554)
Q Consensus 189 ~~~~emerlvtl 200 (554)
....||++++..
T Consensus 98 ~qa~Ele~l~~a 109 (739)
T PF07111_consen 98 AQAEELEALARA 109 (739)
T ss_pred HHHHHHHHHHHH
Confidence 344456666444
No 291
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=62.27 E-value=2.3e+02 Score=30.61 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008764 226 RAELEAMIHRTAELEQKLE 244 (554)
Q Consensus 226 ~~ei~~l~~el~eLe~~l~ 244 (554)
..+++.++.++..+.+-..
T Consensus 150 ~~Ev~~LRreLavLRQl~~ 168 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYS 168 (424)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666554443
No 292
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.24 E-value=2.9e+02 Score=31.64 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhh
Q 008764 436 TIQSLGKQLKSLA 448 (554)
Q Consensus 436 tI~~L~~ql~~L~ 448 (554)
.|..++.++..|.
T Consensus 291 ~I~~ve~Ev~Rl~ 303 (660)
T KOG4302|consen 291 IIEQVEKEVDRLE 303 (660)
T ss_pred HHHHHHHHHHHHH
Confidence 3555566666655
No 293
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.43 E-value=1.6e+02 Score=28.06 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKM 260 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l 260 (554)
....++..+..+..++..+...+..++..+...
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555444444444433
No 294
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.07 E-value=2.2e+02 Score=29.54 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 291 EKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEEL 337 (554)
Q Consensus 291 kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l 337 (554)
+...++.-+..+..+-..++.++..+..+..+.+.+-..|..++++.
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444433
No 295
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.93 E-value=3.1e+02 Score=31.34 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 008764 433 CQKTIQSLGKQLK 445 (554)
Q Consensus 433 ~q~tI~~L~~ql~ 445 (554)
.-..|..+-+.++
T Consensus 355 ll~~~d~~i~k~k 367 (660)
T KOG4302|consen 355 LLENIDNLIKKYK 367 (660)
T ss_pred HHHHHHHHHHHHH
Confidence 3333555555555
No 296
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=59.13 E-value=2.9e+02 Score=30.75 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 008764 33 EKLEFLEKENSALKMELLIQSEEL 56 (554)
Q Consensus 33 ~rl~~~eke~~~l~~el~~l~~el 56 (554)
+++++.--|+.+...++..|...-
T Consensus 40 EnLD~v~~EnqEhevELElLrEDN 63 (832)
T KOG2077|consen 40 ENLDSVLSENQEHEVELELLREDN 63 (832)
T ss_pred HHHHHHhhccchhHHHHHHHhhhH
Confidence 444444455555555555554433
No 297
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.04 E-value=1.8e+02 Score=28.27 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008764 244 ERMDAEKVDLEEKLDKMDA 262 (554)
Q Consensus 244 ~~le~ei~eLe~~l~~l~~ 262 (554)
..++..+..++..+.....
T Consensus 34 rem~~~l~~ar~~lA~~~a 52 (219)
T TIGR02977 34 QEMEDTLVEVRTTSARTIA 52 (219)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 298
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.84 E-value=2.1e+02 Score=29.04 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764 423 LEVAAGKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 423 l~~a~~kl~e~q~tI~~L~~ql~~L~ 448 (554)
|+.+...+.-....|..++.++..+.
T Consensus 163 L~~l~~~~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 163 LASLKNTLVQLSRNIEKLESEINTIK 188 (300)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344444444445555555554443
No 299
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.33 E-value=2e+02 Score=28.66 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008764 327 LREATMQLEELQRELNLVNE 346 (554)
Q Consensus 327 i~ele~ele~l~~el~~l~~ 346 (554)
+..+..+++.++.+-.++.+
T Consensus 109 ~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 109 ISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 300
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.23 E-value=3.1e+02 Score=30.74 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 385 QITVKCQKLEEEQWRMK 401 (554)
Q Consensus 385 e~e~kl~eLe~el~~~~ 401 (554)
++-....++..++..+.
T Consensus 322 ~l~~~~~~~~~el~~L~ 338 (557)
T COG0497 322 DLLEYLDKIKEELAQLD 338 (557)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33334444444444443
No 301
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.37 E-value=1.6e+02 Score=32.07 Aligned_cols=43 Identities=14% Similarity=0.403 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEE 269 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~ 269 (554)
..+..+..++++++.+++.+..+-..|..+-.+++..-..+..
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3455555566666666665555555555444444444333333
No 302
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=56.55 E-value=3.7e+02 Score=31.09 Aligned_cols=9 Identities=0% Similarity=-0.053 Sum_probs=6.1
Q ss_pred ceeccCchh
Q 008764 177 NLSASSPEI 185 (554)
Q Consensus 177 ~~v~~~~~~ 185 (554)
.+||.++..
T Consensus 711 aIVV~DL~~ 719 (1480)
T COG3096 711 AIVVPDLSQ 719 (1480)
T ss_pred eeeeccHHH
Confidence 577777754
No 303
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=56.48 E-value=1.7e+02 Score=27.35 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 417 KIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447 (554)
Q Consensus 417 k~~qeel~~a~~kl~e~q~tI~~L~~ql~~L 447 (554)
...+.+|..+.+++..|...|..++..+...
T Consensus 141 ~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~~ 171 (173)
T PF07445_consen 141 QQLQQEILALEQRLQRCRQAIEKIEEQIQRR 171 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455689999999999999999999998754
No 304
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.04 E-value=3.1e+02 Score=30.10 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=12.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 008764 350 IVESNVSSMEMEAQTMTAKINSLEE 374 (554)
Q Consensus 350 ~le~~L~~le~ei~~l~~~i~~Le~ 374 (554)
.+..-+..+...+..++.++..+..
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554443
No 305
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.79 E-value=2.3e+02 Score=28.46 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhhchhhhhcccCC
Q 008764 421 EDLEVAAGKLAECQKTIQSLGKQLK--SLATLEDFLIDTAS 459 (554)
Q Consensus 421 eel~~a~~kl~e~q~tI~~L~~ql~--~L~~~~~~~~~~~~ 459 (554)
+.|+.+...+..+...+..|..+.. .-.-|.|+|.+.++
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvll~rpK 240 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADVLLRRPK 240 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHHhcCCCC
Confidence 3445555555555555555554444 11136777777765
No 306
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=55.77 E-value=1.1e+02 Score=24.62 Aligned_cols=21 Identities=10% Similarity=-0.009 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008764 313 LAKSQDSVEASELQLREATMQ 333 (554)
Q Consensus 313 l~~l~~el~~~e~~i~ele~e 333 (554)
|..+..+...++-.|-.++..
T Consensus 9 i~~L~KENF~LKLrI~fLee~ 29 (75)
T PF07989_consen 9 IDKLKKENFNLKLRIYFLEER 29 (75)
T ss_pred HHHHHHhhhhHHHHHHHHHHH
Confidence 333333333333333333333
No 307
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=55.18 E-value=2.3e+02 Score=28.39 Aligned_cols=14 Identities=14% Similarity=-0.040 Sum_probs=8.0
Q ss_pred CCc-cccCCcccCCC
Q 008764 205 SGK-HVESGNVTTQS 218 (554)
Q Consensus 205 ~G~-~~~sG~~tGG~ 218 (554)
.|. ++.=|...|.+
T Consensus 125 ~~~~isdLgv~vg~g 139 (264)
T PF07246_consen 125 TFKIISDLGVGVGDG 139 (264)
T ss_pred CCCEeeecccccccc
Confidence 666 66666544443
No 308
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.98 E-value=4.4e+02 Score=30.97 Aligned_cols=21 Identities=0% Similarity=-0.116 Sum_probs=8.2
Q ss_pred ccccccCcccccCCcCCcccc
Q 008764 460 IPEFSRAALPIPKTVGESWKL 480 (554)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~ 480 (554)
...+...|..+...++..|.+
T Consensus 645 v~~~~~~g~v~~i~~~~~~~V 665 (782)
T PRK00409 645 YLSLGQKGEVLSIPDDKEAIV 665 (782)
T ss_pred EccCCceEEEEEEcCCCeEEE
Confidence 343333444333333334543
No 309
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.38 E-value=3.8e+02 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhchhhhhcccCC-ccccccCccccc
Q 008764 435 KTIQSLGKQLKSLATLEDFLIDTAS-IPEFSRAALPIP 471 (554)
Q Consensus 435 ~tI~~L~~ql~~L~~~~~~~~~~~~-~~~~~~~~~~~~ 471 (554)
..+..|..+++.+.-....+++-.. +|-|+|++..++
T Consensus 577 ~~~~~L~~~~~~~~~E~q~l~~~q~~~p~~gC~~~~~~ 614 (852)
T KOG4787|consen 577 AIIAELANVMQEMKNEHQKLDKIKNVTPNTGCSVKRIP 614 (852)
T ss_pred hhhhhhhhhHHHHHhhhhhhccccccCcccCccceecc
Confidence 3455666666665544445555444 788888876443
No 310
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=52.34 E-value=2.2e+02 Score=27.19 Aligned_cols=9 Identities=11% Similarity=0.438 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 008764 389 KCQKLEEEQ 397 (554)
Q Consensus 389 kl~eLe~el 397 (554)
++..|...+
T Consensus 152 Rve~L~~QL 160 (188)
T PF05335_consen 152 RVEELQRQL 160 (188)
T ss_pred HHHHHHHHH
Confidence 333333333
No 311
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=52.31 E-value=1.2e+02 Score=26.40 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 235 RTAELEQKLERMDAEKVDLEEKLD 258 (554)
Q Consensus 235 el~eLe~~l~~le~ei~eLe~~l~ 258 (554)
....+...+..+...+..+...+.
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~i~ 30 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRALIA 30 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333333
No 312
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=52.16 E-value=4.3e+02 Score=30.60 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 008764 223 SSLRAELEAMIHRTAE 238 (554)
Q Consensus 223 ~~l~~ei~~l~~el~e 238 (554)
..+..+++.|+.++-.
T Consensus 432 ~~Le~elekLk~eilK 447 (762)
T PLN03229 432 RELEGEVEKLKEQILK 447 (762)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 3466777777777644
No 313
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=52.01 E-value=5e+02 Score=31.32 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 008764 428 GKLAECQKTIQSLGKQLKSLAT 449 (554)
Q Consensus 428 ~kl~e~q~tI~~L~~ql~~L~~ 449 (554)
-.+-.+|=..+.|--|+..|..
T Consensus 1322 P~M~QlQ~ksealI~qLRelC~ 1343 (1439)
T PF12252_consen 1322 PAMVQLQFKSEALIIQLRELCE 1343 (1439)
T ss_pred hHHHHHhhhhHHHHHHHHHHHH
Confidence 3444455555555666666653
No 314
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=51.04 E-value=2.1e+02 Score=26.70 Aligned_cols=6 Identities=0% Similarity=0.180 Sum_probs=2.2
Q ss_pred CCCcee
Q 008764 174 VNRNLS 179 (554)
Q Consensus 174 ~g~~~v 179 (554)
+|+|.|
T Consensus 37 lgktav 42 (201)
T KOG4603|consen 37 LGKTAV 42 (201)
T ss_pred ccchHH
Confidence 333333
No 315
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=50.89 E-value=82 Score=25.95 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008764 359 EMEAQTMTAKINSLEEEVEME 379 (554)
Q Consensus 359 e~ei~~l~~~i~~Le~el~~~ 379 (554)
+.+...+...+...+.++..+
T Consensus 42 E~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHH
Confidence 344444444444444444443
No 316
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=50.68 E-value=3.4e+02 Score=28.92 Aligned_cols=49 Identities=14% Similarity=0.321 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 268 EEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKS 316 (554)
Q Consensus 268 ~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l 316 (554)
...+..+-.++.+++..-...+.-+..+-+.|+.|...+..|...+..+
T Consensus 63 ~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~L 111 (383)
T PF04100_consen 63 QEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTL 111 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444444444444444444
No 317
>PLN03188 kinesin-12 family protein; Provisional
Probab=50.63 E-value=5.7e+02 Score=31.55 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 008764 238 ELEQKLERMDAEK 250 (554)
Q Consensus 238 eLe~~l~~le~ei 250 (554)
.+..+|+++..++
T Consensus 990 vll~eI~dlr~qL 1002 (1320)
T PLN03188 990 VLLEEIQDLRSQL 1002 (1320)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555444
No 318
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=49.87 E-value=2.9e+02 Score=27.90 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.7
Q ss_pred hhhHHH
Q 008764 154 SDSWAS 159 (554)
Q Consensus 154 ~~~~a~ 159 (554)
++|||+
T Consensus 76 ADGyAV 81 (267)
T PF10234_consen 76 ADGYAV 81 (267)
T ss_pred hhHHHH
Confidence 344444
No 319
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=48.13 E-value=3.9e+02 Score=28.92 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 425 VAAGKLAECQKTIQSLG 441 (554)
Q Consensus 425 ~a~~kl~e~q~tI~~L~ 441 (554)
.+...+..+..+...++
T Consensus 303 DL~eDl~k~~etf~lve 319 (424)
T PF03915_consen 303 DLKEDLKKASETFALVE 319 (424)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444455554444
No 320
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=47.84 E-value=4e+02 Score=28.93 Aligned_cols=40 Identities=20% Similarity=0.081 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCCccc
Q 008764 422 DLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPE 462 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~~ 462 (554)
+++.+..-++..-.....+..+. .....+--+++.+.+|.
T Consensus 381 e~~~~r~~ye~lL~r~qe~~~~~-~~~~~n~rvIs~A~~P~ 420 (458)
T COG3206 381 EAEAARSLYETLLQRYQELSIQE-ASPIGNARVISPAVPPL 420 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCCceeEeccccCCC
Confidence 33334444444444444444443 34456666777777774
No 321
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.58 E-value=1.3e+02 Score=28.83 Aligned_cols=11 Identities=18% Similarity=0.033 Sum_probs=5.5
Q ss_pred hhHHHhhhhhh
Q 008764 155 DSWASALIAEL 165 (554)
Q Consensus 155 ~~~a~~li~~~ 165 (554)
.+|.-..|+|+
T Consensus 31 asf~k~~i~Yd 41 (195)
T PF12761_consen 31 ASFEKEQIDYD 41 (195)
T ss_pred HHHhcCCcCcc
Confidence 34444555554
No 322
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.47 E-value=1.2e+02 Score=22.88 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 008764 252 DLEEKLDKMDAEKAEL 267 (554)
Q Consensus 252 eLe~~l~~l~~e~~~l 267 (554)
.|..++.++..++..+
T Consensus 14 ~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 323
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.25 E-value=2e+02 Score=28.49 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=30.1
Q ss_pred ecCCCCCc-cccCCcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 200 MPNNKSGK-HVESGNVTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA 262 (554)
Q Consensus 200 l~~t~~G~-~~~sG~~tGG~~~~~~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~ 262 (554)
+|++.+|+ |.|-|- +.++ .-...|+.|++++..|+.-|.+-+..|.+-..++..|..
T Consensus 203 ~~n~~NG~~f~P~~D-~~~~-----dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 203 VPNNENGDGFPPFGD-RDPG-----DHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred cCCCCCCCcCCCCCC-CCCc-----chHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 56677888 888551 2111 122455666666666666665555555444444444433
No 324
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=46.67 E-value=3.8e+02 Score=28.31 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=7.8
Q ss_pred Ccccccccccccc
Q 008764 532 PEKNRNGFAKFFS 544 (554)
Q Consensus 532 ~~~~~~~~~~~~~ 544 (554)
|-.-|||=|.+|+
T Consensus 437 s~~l~n~~~qv~~ 449 (464)
T KOG4637|consen 437 SKPLRNGPGQVFT 449 (464)
T ss_pred chhhhcCcchhhh
Confidence 4445677776664
No 325
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.50 E-value=1e+02 Score=24.50 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 008764 50 LIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMAC 99 (554)
Q Consensus 50 ~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~ 99 (554)
..+...+..++....+.+++++.++....+...-++++.+..+.|-.-+.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888889999999999999988888888666554333
No 326
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=46.06 E-value=2.1e+02 Score=30.46 Aligned_cols=124 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 273 QMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVE 352 (554)
Q Consensus 273 ~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le 352 (554)
++..-+.....-+....+.|..+..+-......+..++.+...+.+.++--..+-.+|+.--..++.-..++......++
T Consensus 108 Di~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaE 187 (558)
T PF15358_consen 108 DITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAE 187 (558)
T ss_pred cHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 353 SNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQW 398 (554)
Q Consensus 353 ~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~ 398 (554)
..-..++..-.-++.++.-|+..+.++.....+.+ +.+|+..++
T Consensus 188 iKtnvLkqnS~~LEekLr~lq~qLqdE~prrqe~e--~qELeqkle 231 (558)
T PF15358_consen 188 IKTNVLKQNSALLEEKLRYLQQQLQDETPRRQEAE--WQELEQKLE 231 (558)
T ss_pred HHhcccccchHHHHHHHHHHHHHhcccCcchhhhh--HHHHHHHHh
No 327
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=45.09 E-value=3.6e+02 Score=27.70 Aligned_cols=6 Identities=0% Similarity=0.014 Sum_probs=2.5
Q ss_pred ccCCCc
Q 008764 214 VTTQST 219 (554)
Q Consensus 214 ~tGG~~ 219 (554)
+.||.+
T Consensus 21 LvGGp~ 26 (301)
T PF06120_consen 21 LVGGPP 26 (301)
T ss_pred hhcchH
Confidence 344433
No 328
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.45 E-value=4.2e+02 Score=28.18 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 008764 224 SLRAELEAMIHRTAELEQKLERM 246 (554)
Q Consensus 224 ~l~~ei~~l~~el~eLe~~l~~l 246 (554)
.....+..|+.++.+|.+++...
T Consensus 91 s~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 91 SPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666655554
No 329
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.25 E-value=5.5e+02 Score=29.50 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 008764 436 TIQSLGKQLKSL 447 (554)
Q Consensus 436 tI~~L~~ql~~L 447 (554)
.+...++.++..
T Consensus 590 ~L~~~E~rLNeA 601 (739)
T PF07111_consen 590 QLSEMEKRLNEA 601 (739)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 330
>PTZ00464 SNF-7-like protein; Provisional
Probab=44.07 E-value=3.1e+02 Score=26.62 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 223 SSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKL 257 (554)
Q Consensus 223 ~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l 257 (554)
..+...+..++.++..+..++..++.++..+...+
T Consensus 14 ~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 14 PTLEDASKRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777766665555444443
No 331
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.83 E-value=1.1e+02 Score=33.33 Aligned_cols=17 Identities=0% Similarity=0.274 Sum_probs=6.3
Q ss_pred HHhHHHHHHHHHHHHHH
Q 008764 352 ESNVSSMEMEAQTMTAK 368 (554)
Q Consensus 352 e~~L~~le~ei~~l~~~ 368 (554)
+.+|+.++.++..|+.+
T Consensus 103 e~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 332
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.70 E-value=2.2e+02 Score=32.04 Aligned_cols=10 Identities=20% Similarity=-0.077 Sum_probs=4.0
Q ss_pred ccccCCCCcc
Q 008764 477 SWKLPSNVTF 486 (554)
Q Consensus 477 ~~~~~~~~~~ 486 (554)
+|.++-+-+|
T Consensus 370 ~~~~g~P~~~ 379 (555)
T TIGR03545 370 HDLLGKPTTI 379 (555)
T ss_pred hhhhCCCeEE
Confidence 3344444333
No 333
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=43.33 E-value=6.2e+02 Score=29.89 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=9.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 008764 33 EKLEFLEKENSALKMELLIQSE 54 (554)
Q Consensus 33 ~rl~~~eke~~~l~~el~~l~~ 54 (554)
.|+..+..++......++.+..
T Consensus 219 ~rl~~l~~elr~~~~~i~~~~~ 240 (984)
T COG4717 219 ARLAELRSELRADRDHIRALRD 240 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 334
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=43.16 E-value=3e+02 Score=30.07 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQ 273 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~ 273 (554)
.++..+...-+..+++++...++...++..+.....++..+..++..
T Consensus 28 ~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkh 74 (604)
T KOG3564|consen 28 DEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKH 74 (604)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHH
Confidence 45556666666666666666666666666655555555544444433
No 335
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=42.89 E-value=3.3e+02 Score=26.53 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=2.5
Q ss_pred HHHhhh
Q 008764 134 VEMDIR 139 (554)
Q Consensus 134 ve~~~~ 139 (554)
|+.++.
T Consensus 32 I~eE~~ 37 (221)
T PF05700_consen 32 IEEEMR 37 (221)
T ss_pred HHHHHh
Confidence 444444
No 336
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=42.39 E-value=1.6e+02 Score=30.16 Aligned_cols=71 Identities=24% Similarity=0.249 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCC-C-CCCChhHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHhhhhcHHHHH
Q 008764 3 LEFESRLLELQSKAETAKSEP-S-YHMDPDLFEKLEFLEKENSALKMEL---------LIQSEELEIRAIERDLSNQAAE 71 (554)
Q Consensus 3 ~~le~~~~~~~~~~~~~~~~~-~-~~~~~~l~~rl~~~eke~~~l~~el---------~~l~~el~~~~~e~~~~~~~~e 71 (554)
+.||..+.-+++||.++++-. + +.-...|..|++++++++...+..| -.+..+.+.+..|.++.++...
T Consensus 226 s~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~l~lE~~fAekay~ 305 (372)
T COG3524 226 SKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLYLENTFAEKAYA 305 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999876 3 5677889999999999887766543 3333344444444444444443
Q ss_pred HH
Q 008764 72 TA 73 (554)
Q Consensus 72 ~~ 73 (554)
.+
T Consensus 306 AA 307 (372)
T COG3524 306 AA 307 (372)
T ss_pred HH
Confidence 33
No 337
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=41.95 E-value=2.5e+02 Score=24.96 Aligned_cols=18 Identities=22% Similarity=0.232 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008764 301 KMEAEKAELEMALAKSQD 318 (554)
Q Consensus 301 ~le~eleele~el~~l~~ 318 (554)
....++......|..++.
T Consensus 12 ~a~aeL~~a~~~I~~~q~ 29 (136)
T PF11570_consen 12 AARAELDQADEDIATLQE 29 (136)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 338
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=41.65 E-value=4.7e+02 Score=27.98 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLER 245 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~ 245 (554)
.+......+..+..++..
T Consensus 97 ~~~~~~~~l~~~~~q~~~ 114 (421)
T TIGR03794 97 RLQESYQKLTQLQEQLEE 114 (421)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 339
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=40.93 E-value=5.4e+02 Score=28.50 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008764 281 LEEKLE 286 (554)
Q Consensus 281 ~e~el~ 286 (554)
.+.++.
T Consensus 233 ~~~el~ 238 (511)
T PF09787_consen 233 EEAELQ 238 (511)
T ss_pred HHHHHH
Confidence 333333
No 340
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.85 E-value=79 Score=27.24 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008764 31 LFEKLEFLEKENSALKMELLIQSEELE 57 (554)
Q Consensus 31 l~~rl~~~eke~~~l~~el~~l~~el~ 57 (554)
|-.++..++..+..+..++..|.+.+.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 341
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.81 E-value=6.6e+02 Score=29.49 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=12.3
Q ss_pred hcccCCccccccCcccccCCcCCccccC
Q 008764 454 LIDTASIPEFSRAALPIPKTVGESWKLP 481 (554)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (554)
.||.--.+.+...|......+|..|.+-
T Consensus 627 ~Gd~V~v~~~~~~g~v~~i~~~~~~~V~ 654 (771)
T TIGR01069 627 IGDKVRIRYFGQKGKIVQILGGNKWNVT 654 (771)
T ss_pred CCCEEEEccCCceEEEEEEcCCCeEEEE
Confidence 3443334444444443333334455443
No 342
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=39.97 E-value=4.4e+02 Score=27.20 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q 008764 84 VAKLEAECRRLKAMA 98 (554)
Q Consensus 84 i~kLEae~q~lr~~~ 98 (554)
..+|+.-|+.+++..
T Consensus 75 rsKLeelCRelQr~n 89 (391)
T KOG1850|consen 75 RSKLEELCRELQRAN 89 (391)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777766543
No 343
>PRK14011 prefoldin subunit alpha; Provisional
Probab=39.74 E-value=2.9e+02 Score=25.09 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDK 259 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~ 259 (554)
+++.+...++.+.++++.+...+..+.....+
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e 35 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKME 35 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555444444444444433333
No 344
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=39.60 E-value=4.3e+02 Score=26.97 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008764 424 EVAAGKLAECQKTIQSLGKQLK 445 (554)
Q Consensus 424 ~~a~~kl~e~q~tI~~L~~ql~ 445 (554)
..+...+...+..+......+.
T Consensus 182 ~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 182 DLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444443
No 345
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.41 E-value=2.4e+02 Score=28.25 Aligned_cols=33 Identities=12% Similarity=0.306 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 252 DLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK 284 (554)
Q Consensus 252 eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~e 284 (554)
+|..+++.+..++..|...++.+..++..+.++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 346
>COG5283 Phage-related tail protein [Function unknown]
Probab=39.05 E-value=8.2e+02 Score=30.02 Aligned_cols=87 Identities=10% Similarity=0.190 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKA 307 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~ele 307 (554)
.|..|...+..-.+.+..++.+..--..-+......+..|...++....-+.++..++..+.......++.+.++..+.-
T Consensus 23 ~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~t 102 (1213)
T COG5283 23 NINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYT 102 (1213)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333333334444444444444444444444444444444444444444433333
Q ss_pred HHHHHHH
Q 008764 308 ELEMALA 314 (554)
Q Consensus 308 ele~el~ 314 (554)
.++..+.
T Consensus 103 qae~~~~ 109 (1213)
T COG5283 103 QAENKLR 109 (1213)
T ss_pred HHHHHHH
Confidence 3333333
No 347
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.91 E-value=70 Score=37.83 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=7.2
Q ss_pred hhhHHHhhhhhhhhc
Q 008764 154 SDSWASALIAELDQF 168 (554)
Q Consensus 154 ~~~~a~~li~~~~~~ 168 (554)
...|..+.+.-...+
T Consensus 320 ~~~w~l~d~~n~~~l 334 (847)
T KOG0998|consen 320 AHVWLLADTQNTGTL 334 (847)
T ss_pred hhhhhhcchhccCcc
Confidence 345666555433333
No 348
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=38.85 E-value=4.4e+02 Score=26.86 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHH
Q 008764 287 KMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE------SKRIVESNVSSMEM 360 (554)
Q Consensus 287 ~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~------~~~~le~~L~~le~ 360 (554)
.+..++..+-.++..+..++.++.........-+..-...+.+...+++.++.+++.-.. .+..+...+..++.
T Consensus 270 ~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~ 349 (384)
T KOG0972|consen 270 SLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKE 349 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHH
Confidence 333444444444444444444444333333333333333334444444444444433222 12334444555555
Q ss_pred HHHHHHHHHHHHH
Q 008764 361 EAQTMTAKINSLE 373 (554)
Q Consensus 361 ei~~l~~~i~~Le 373 (554)
+...+.-+|..++
T Consensus 350 et~~mnv~igv~e 362 (384)
T KOG0972|consen 350 ETQTMNVQIGVFE 362 (384)
T ss_pred HHHhhhhheehhh
Confidence 5555544444444
No 349
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=38.57 E-value=2.8e+02 Score=24.81 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 008764 327 LREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQ-------TMTAKINSLEEEVEMERALS 383 (554)
Q Consensus 327 i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~-------~l~~~i~~Le~el~~~~~~~ 383 (554)
|.-|..+...++.+-...+-++.++..+|..++.+.. .|..+|..|+..+.+++...
T Consensus 6 l~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 350
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.77 E-value=4.2e+02 Score=26.34 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008764 424 EVAAGKLAECQKTIQSLGKQ 443 (554)
Q Consensus 424 ~~a~~kl~e~q~tI~~L~~q 443 (554)
.-+...+.-|++-|..|+.-
T Consensus 221 ~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 221 DMAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666654
No 351
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=37.74 E-value=5.6e+02 Score=27.77 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 008764 422 DLEVAAGKLAECQKTIQSLGKQLKSLATLE 451 (554)
Q Consensus 422 el~~a~~kl~e~q~tI~~L~~ql~~L~~~~ 451 (554)
.+..+..+++-.......+-...+.+....
T Consensus 374 ~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 374 QLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666666666666666665554333
No 352
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.32 E-value=2.9e+02 Score=29.79 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 247 DAEKVDLEEKLDKMDAEKAELEEKL 271 (554)
Q Consensus 247 e~ei~eLe~~l~~l~~e~~~l~~~i 271 (554)
..+...+..+++.++.+.+.+..++
T Consensus 36 d~~~r~~~~~~~~l~~erN~~sk~i 60 (418)
T TIGR00414 36 DDERKKLLSEIEELQAKRNELSKQI 60 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444
No 353
>PLN02678 seryl-tRNA synthetase
Probab=37.29 E-value=3.1e+02 Score=29.89 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008764 253 LEEKLDKMDAEKAELEE 269 (554)
Q Consensus 253 Le~~l~~l~~e~~~l~~ 269 (554)
+..+++.+..+.+.+..
T Consensus 45 l~~~~e~lr~erN~~sk 61 (448)
T PLN02678 45 RQFELDSLRKEFNKLNK 61 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 354
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=37.00 E-value=5.6e+02 Score=27.49 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chhhhhcccCCcc
Q 008764 414 AEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA-----TLEDFLIDTASIP 461 (554)
Q Consensus 414 ~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~-----~~~~~~~~~~~~~ 461 (554)
.++..++.-+..+..+|++.+.....|..-...|. ...-+++|.+.=+
T Consensus 351 ~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL~ID~ekcm 403 (421)
T KOG2685|consen 351 DEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSLFIDREKCM 403 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhccHHHHH
Confidence 33444444444455555555555444444444333 3456666665533
No 355
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.59 E-value=7.9e+02 Score=28.86 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=12.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q 008764 71 ETASKQHLDSIKKVAKLEAECRR 93 (554)
Q Consensus 71 e~~~~q~~e~~~ki~kLEae~q~ 93 (554)
+.++......-+++..++.+++.
T Consensus 142 d~aS~~L~~ir~~~~~~~~~i~~ 164 (771)
T TIGR01069 142 DGASEELDAIRESLKALEEEVVK 164 (771)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555566655443
No 356
>COG5283 Phage-related tail protein [Function unknown]
Probab=35.37 E-value=9.3e+02 Score=29.58 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKA 307 (554)
Q Consensus 239 Le~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~ele 307 (554)
|...+......-+.++.++.....-+..-...++.+...++....-+.++...+.++.+.....+....
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~ 95 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQ 95 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544444444333333333333344444333333333333333333333333333333333
No 357
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.36 E-value=67 Score=29.98 Aligned_cols=10 Identities=30% Similarity=0.225 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 008764 289 DAEKAKLEEK 298 (554)
Q Consensus 289 ~~kl~~Le~e 298 (554)
..+..-|+.+
T Consensus 13 IERnalLE~E 22 (166)
T PF04880_consen 13 IERNALLESE 22 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhHHHHHH
Confidence 3333333333
No 358
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=35.22 E-value=7.8e+02 Score=28.64 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008764 431 AECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 431 ~e~q~tI~~L~~ql~~L~ 448 (554)
-++++...+|...+...+
T Consensus 715 ~~lkek~e~l~~e~~~~~ 732 (762)
T PLN03229 715 SELKEKFEELEAELAAAR 732 (762)
T ss_pred HhHHHHHHHHHHHHHHhh
Confidence 345555556666555443
No 359
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=35.12 E-value=8e+02 Score=28.79 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=12.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 008764 34 KLEFLEKENSALKMELLIQSEELE 57 (554)
Q Consensus 34 rl~~~eke~~~l~~el~~l~~el~ 57 (554)
+....++.+..+.+.+..+.--.+
T Consensus 458 adqdgek~~allel~ieale~hmd 481 (1424)
T KOG4572|consen 458 ADQDGEKDIALLELKIEALEIHMD 481 (1424)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344455566666665555554333
No 360
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=34.82 E-value=6.9e+02 Score=27.98 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=9.3
Q ss_pred CccccCCCCccccCCCC
Q 008764 476 ESWKLPSNVTFSHKRDL 492 (554)
Q Consensus 476 ~~~~~~~~~~~~~~~~~ 492 (554)
..|-+-.+..|-|.++.
T Consensus 592 g~~vvG~~v~~ap~~~~ 608 (832)
T KOG2077|consen 592 GGSVVGASVFYAPVAGL 608 (832)
T ss_pred CCccccCcccccCccCc
Confidence 44555555555565554
No 361
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.58 E-value=3.6e+02 Score=24.59 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDL 253 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eL 253 (554)
+++.+...++.+...++.+..++..+
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l 32 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAAL 32 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 362
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.41 E-value=2e+02 Score=23.70 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 008764 34 KLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLKAMACRASS 103 (554)
Q Consensus 34 rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr~~~~k~~~ 103 (554)
.|+.+++.+......+..+...+ .-.+...+.-..+.+++.....++...|.+...||..-+|..+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL----~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~~~ 71 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRL----RRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRKSML 71 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH----cccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhhhHH
Confidence 45555555555555555555544 3445666777778888889999999999999999986666543
No 363
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=34.34 E-value=6.4e+02 Score=27.40 Aligned_cols=143 Identities=9% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 243 LERMDAEKVDLE-----EKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKM--DAEKAKLEEKIEKMEAEKAELEMALAK 315 (554)
Q Consensus 243 l~~le~ei~eLe-----~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l--~~kl~~Le~ele~le~eleele~el~~ 315 (554)
+...+.-++.+. ..+.-...++...+..+......+..++....-+ .......-.-+..++.++.+++.++..
T Consensus 225 L~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~ 304 (434)
T PRK15178 225 LSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQ 304 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 316 SQDSVEASELQLREATMQLEELQRELNLVNESKR------IVESNV---SSMEMEAQTMTAKINSLEEEVEMERALSMQ 385 (554)
Q Consensus 316 l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~------~le~~L---~~le~ei~~l~~~i~~Le~el~~~~~~~~e 385 (554)
+...+.....++..++..+..++.+|......+. .+...+ +.+.-+..-.+..+......++..+.....
T Consensus 305 L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~R 383 (434)
T PRK15178 305 LMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALR 383 (434)
T ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 364
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.98 E-value=71 Score=29.81 Aligned_cols=14 Identities=36% Similarity=0.556 Sum_probs=0.7
Q ss_pred HHHHHHHHHHHHHH
Q 008764 389 KCQKLEEEQWRMKQ 402 (554)
Q Consensus 389 kl~eLe~el~~~~~ 402 (554)
.++.|.+++..++.
T Consensus 32 ~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 32 EVQRLKDELRDLKQ 45 (166)
T ss_dssp CH------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 365
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.76 E-value=4.7e+02 Score=25.66 Aligned_cols=122 Identities=17% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 316 SQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEE 395 (554)
Q Consensus 316 l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~ 395 (554)
+..........+.+.-..+...+.+...+...+.+.++++.....-+.+-......++.++...+.....+...++.+..
T Consensus 35 ~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lke 114 (246)
T KOG4657|consen 35 IQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKE 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008764 396 EQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLAT 449 (554)
Q Consensus 396 el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~ 449 (554)
++...+. -+..+...+..+.....+..+.-......+.|...
T Consensus 115 E~dd~ke------------iIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~wy~d 156 (246)
T KOG4657|consen 115 EKDDSKE------------IISQKRQALSKAKENAGKRKQDSADIHEAASWYND 156 (246)
T ss_pred HhhhHHH------------HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH
No 366
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=33.66 E-value=76 Score=26.99 Aligned_cols=12 Identities=25% Similarity=0.363 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 008764 306 KAELEMALAKSQ 317 (554)
Q Consensus 306 leele~el~~l~ 317 (554)
+..++.++..|.
T Consensus 17 ~~~ie~ElEeLT 28 (100)
T PF06428_consen 17 KEQIESELEELT 28 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 367
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=33.36 E-value=5.6e+02 Score=26.47 Aligned_cols=125 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHH
Q 008764 293 AKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSS---MEMEAQTMTAKI 369 (554)
Q Consensus 293 ~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~---le~ei~~l~~~i 369 (554)
..++..+...+.++...+..+......+......+..++..+...+..+...+........-... -+.++...+..+
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~ 161 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQ 161 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 008764 370 NSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAEC 433 (554)
Q Consensus 370 ~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~ 433 (554)
...+.++...+.........+..+......+.. .+..++.+...+..+
T Consensus 162 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~----------------~~a~l~~a~~~l~~~ 209 (346)
T PRK10476 162 RDAEVSLNQALLQAQAAAAAVGGVDALVAQRAA----------------REAALAIAELHLEDT 209 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH----------------HHHHHHHHHHHhhcC
No 368
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.25 E-value=3.1e+02 Score=31.36 Aligned_cols=27 Identities=4% Similarity=-0.062 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 373 EEEVEMERALSMQITVKCQKLEEEQWR 399 (554)
Q Consensus 373 e~el~~~~~~~~e~e~kl~eLe~el~~ 399 (554)
..++........++..+|.++...++.
T Consensus 604 ~~~~~~~~~~l~~~~~~w~~l~~~~~~ 630 (638)
T PRK10636 604 LQQQASAKSGLEECEMAWLEAQEQLEQ 630 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444433
No 369
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.08 E-value=6.4e+02 Score=28.36 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=4.0
Q ss_pred hcccCCcccc
Q 008764 454 LIDTASIPEF 463 (554)
Q Consensus 454 ~~~~~~~~~~ 463 (554)
|.+....|+|
T Consensus 331 F~~~~~~P~~ 340 (555)
T TIGR03545 331 FKDDNPYPDF 340 (555)
T ss_pred ccCCCCCCcE
Confidence 3333334444
No 370
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.07 E-value=7.3e+02 Score=27.69 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----
Q 008764 282 EEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSS---- 357 (554)
Q Consensus 282 e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~---- 357 (554)
+..+.....-..+++.-+..+...++.--.++..++++++..++.-..|...+++.....+.+....+.+-.....
T Consensus 573 EqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 008764 358 -------MEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKL 430 (554)
Q Consensus 358 -------le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl 430 (554)
...|+..+...++.|..-++..+.....-...+......+.+-.- ..-..+.+.++.-++.+...+
T Consensus 653 l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y-------~l~~~Q~~~iqsiL~~L~~~i 725 (741)
T KOG4460|consen 653 LSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTY-------ILSAYQRKCIQSILKELGEHI 725 (741)
T ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-------cccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 008764 431 AECQKTIQSLGKQLK 445 (554)
Q Consensus 431 ~e~q~tI~~L~~ql~ 445 (554)
.+.-+....+++-++
T Consensus 726 ~~~~k~VK~i~~~v~ 740 (741)
T KOG4460|consen 726 REMVKQVKDIRNHVN 740 (741)
T ss_pred HHHHHHHHHHHHhhc
No 371
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=32.98 E-value=4.4e+02 Score=25.15 Aligned_cols=12 Identities=17% Similarity=0.099 Sum_probs=6.3
Q ss_pred CCCceeccCchh
Q 008764 174 VNRNLSASSPEI 185 (554)
Q Consensus 174 ~g~~~v~~~~~~ 185 (554)
+|-++.+..-++
T Consensus 51 YGASLlF~~~el 62 (192)
T PF11180_consen 51 YGASLLFYPKEL 62 (192)
T ss_pred ccceeeecCCcc
Confidence 455555555554
No 372
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=32.93 E-value=6.2e+02 Score=26.87 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 414 AEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447 (554)
Q Consensus 414 ~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L 447 (554)
.+++.+.+-+..+..+|.+.+..+..|......|
T Consensus 324 ~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~L 357 (384)
T PF03148_consen 324 EEVKELRESIEALQEKLDEAEASLQKLERTRLRL 357 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555554444444
No 373
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.74 E-value=3.9e+02 Score=28.88 Aligned_cols=19 Identities=26% Similarity=0.636 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008764 253 LEEKLDKMDAEKAELEEKL 271 (554)
Q Consensus 253 Le~~l~~l~~e~~~l~~~i 271 (554)
+..+++.++.+.+.+.+.+
T Consensus 40 l~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 40 LQTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 374
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.72 E-value=1.3e+02 Score=30.07 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 008764 333 QLEELQRE 340 (554)
Q Consensus 333 ele~l~~e 340 (554)
+|.+.+.+
T Consensus 170 ~L~~v~~e 177 (262)
T PF14257_consen 170 ELSRVRSE 177 (262)
T ss_pred HHHHHHHH
Confidence 33333333
No 375
>PRK12704 phosphodiesterase; Provisional
Probab=32.25 E-value=7.5e+02 Score=27.56 Aligned_cols=144 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 239 LEQKLERMDAEKVDLEEKL-DKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQ 317 (554)
Q Consensus 239 Le~~l~~le~ei~eLe~~l-~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~ 317 (554)
..+.....+.....+..+. .++......++..+...+.++...+..+..-...+..-...+++.+.++...+..+....
T Consensus 44 ~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re 123 (520)
T PRK12704 44 LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ 123 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 318 DSVEASELQLREATMQLEELQRELNLVNESKRI---VESNVSSMEMEAQTMTAKINSLEEEVEMERAL 382 (554)
Q Consensus 318 ~el~~~e~~i~ele~ele~l~~el~~l~~~~~~---le~~L~~le~ei~~l~~~i~~Le~el~~~~~~ 382 (554)
.++......+..+..+....-..+..+...-.. ++.--..+..+...+-.++..--..-.+.++.
T Consensus 124 ~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~ 191 (520)
T PRK12704 124 QELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAK 191 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 376
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.88 E-value=2.6e+02 Score=30.33 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008764 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQT 364 (554)
Q Consensus 285 l~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~ 364 (554)
...+..++..+.+++..+..++..++..+..+...-. ....-......+..+......+...+..+..++..++..+..
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 008764 365 M 365 (554)
Q Consensus 365 l 365 (554)
.
T Consensus 408 ~ 408 (451)
T PF03961_consen 408 S 408 (451)
T ss_pred h
No 377
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=31.86 E-value=3.4e+02 Score=23.48 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHhHHHHH
Q 008764 302 MEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE----------------------SKRIVESNVSSME 359 (554)
Q Consensus 302 le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~----------------------~~~~le~~L~~le 359 (554)
+....++.-..+..++..+...-.....++..+.+-+.-++++.- .+..+..+|.-+.
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~ 82 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFIS 82 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 360 MEAQTMTAKINSLEEEVEMERALSMQITVKC 390 (554)
Q Consensus 360 ~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl 390 (554)
.++.++...+...+.+..+.+.....+...+
T Consensus 83 ~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 83 KEIKRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 378
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.77 E-value=2.7e+02 Score=30.24 Aligned_cols=78 Identities=29% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 238 ELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKS 316 (554)
Q Consensus 238 eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l 316 (554)
.+..++..+..++..+...+..+...+..+...-. ...........+..+......+...+..+..++..+...+...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 379
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.70 E-value=5.5e+02 Score=25.88 Aligned_cols=220 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEK------------------LEKM 288 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~e------------------l~~l 288 (554)
.+|..+..+...+.+++..-...|..|...+.....+...+....+.++..+..++.+ .+++
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdL 88 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDL 88 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008764 289 DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAK 368 (554)
Q Consensus 289 ~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~ 368 (554)
...+.+..++-.++..+.+.+..+...+....+-.+..+...+.+....-.+-..-.+.--.-...-...-...+.++.+
T Consensus 89 aa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak 168 (389)
T KOG4687|consen 89 AADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAK 168 (389)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 369 INSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVE-----------LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTI 437 (554)
Q Consensus 369 i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~-----------~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI 437 (554)
-..|.-.+...-....++-......+-...++..++- +..++.+..+-+-+.+.+..+.++++-...+|
T Consensus 169 ~a~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhaklkiadeElEliK~si 248 (389)
T KOG4687|consen 169 CAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAKLKIADEELELIKMSI 248 (389)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHHhcccHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 008764 438 QSLGKQLKS 446 (554)
Q Consensus 438 ~~L~~ql~~ 446 (554)
.....-...
T Consensus 249 aKYKqM~dA 257 (389)
T KOG4687|consen 249 AKYKQMADA 257 (389)
T ss_pred HHHHHHHHH
No 380
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=31.62 E-value=3.8e+02 Score=24.02 Aligned_cols=106 Identities=12% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 271 LEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRI 350 (554)
Q Consensus 271 ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~ 350 (554)
++++...+......+......+..+...+..+...-......+..+......+.-.+-.+-..++-++..=-.+...-..
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q ss_pred HHHhHHHHHHHHHH---HHHHHHHHHHHH
Q 008764 351 VESNVSSMEMEAQT---MTAKINSLEEEV 376 (554)
Q Consensus 351 le~~L~~le~ei~~---l~~~i~~Le~el 376 (554)
+..+++.+..++.. +..+++.|-..+
T Consensus 112 L~~~le~l~~~l~~p~~~~~rl~El~a~l 140 (141)
T PF13874_consen 112 LRKRLEALEAQLNAPAQLKGRLNELWAQL 140 (141)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHh
No 381
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=31.48 E-value=1.7e+02 Score=21.76 Aligned_cols=46 Identities=30% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHHHH
Q 008764 8 RLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSE 54 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eke~~~l~~el~~l~~ 54 (554)
+|.+|+.++-+.. +.-....+....+|..++.++..|+.++..++.
T Consensus 5 Rl~ELe~klkaer-E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 5 RLEELERKLKAER-EARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHhH-HhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
No 382
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.47 E-value=3.4e+02 Score=23.35 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 230 EAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEE 283 (554)
Q Consensus 230 ~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~ 283 (554)
..+-..+..++.++..+-.++..|+..+..+..+-..|..+-..+...+...+.
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 383
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.44 E-value=6.9e+02 Score=26.94 Aligned_cols=159 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 230 EAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAEL 309 (554)
Q Consensus 230 ~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleel 309 (554)
.+.-.++..--+.|+.+++.+.++..++...+.+......+...++..+. +...+..-...++.+... ++++.+
T Consensus 241 kehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~----ea~rl~elreg~e~e~~r--kelE~l 314 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD----EAPRLSELREGVENETSR--KELEQL 314 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh----hhhhhhhhhcchhHHHHH--HHHHHH
Q ss_pred HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------HH
Q 008764 310 EMALAKSQDSVE-----------------ASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEA--------QT 364 (554)
Q Consensus 310 e~el~~l~~el~-----------------~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei--------~~ 364 (554)
...+.+.+.+++ ..+.++..++.+.....+++..+.+.-..+...-..+-.-+ .+
T Consensus 315 R~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDd 394 (575)
T KOG4403|consen 315 RVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDD 394 (575)
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 365 MTAKINSLEEEVEMERALSMQITVKCQKLE 394 (554)
Q Consensus 365 l~~~i~~Le~el~~~~~~~~e~e~kl~eLe 394 (554)
...+|-.+...+.+......+..-++..++
T Consensus 395 VD~kIleak~al~evtt~lrErl~RWqQIE 424 (575)
T KOG4403|consen 395 VDHKILEAKSALSEVTTLLRERLHRWQQIE 424 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 384
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.24 E-value=5.5e+02 Score=27.66 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 008764 263 EKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQ----LREATMQLEELQ 338 (554)
Q Consensus 263 e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~----i~ele~ele~l~ 338 (554)
++..+....+.+...+..-.-......+.+-.+..+..++..+++.+..+...+.+++...... ...+..+...++
T Consensus 3 Dik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~ 82 (418)
T TIGR00414 3 DRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELK 82 (418)
T ss_pred CHHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 008764 339 RELNLVNESKRIVESNVSSM 358 (554)
Q Consensus 339 ~el~~l~~~~~~le~~L~~l 358 (554)
.++..++..+..++..+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 83 EELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 385
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.22 E-value=6.3e+02 Score=26.37 Aligned_cols=149 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 232 MIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA-EKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELE 310 (554)
Q Consensus 232 l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~-el~~~e~el~~l~~kl~~Le~ele~le~eleele 310 (554)
++.+...|.++|+---.+....+.....+...+.+-...-+.+.. -+-+....+-.....-.+.+.-.-+++.+.....
T Consensus 144 LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~ 223 (561)
T KOG1103|consen 144 LEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTK 223 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 311 MALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMER 380 (554)
Q Consensus 311 ~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~ 380 (554)
.--..+-.+-+.--..-...++.++++..+.+-+...+...+.+-.-+..++..++.-+..++......+
T Consensus 224 k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 224 KGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred CChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
No 386
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.21 E-value=5.6e+02 Score=25.82 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q 008764 241 QKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKM-----------EAEKAEL 309 (554)
Q Consensus 241 ~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~l-----------e~eleel 309 (554)
..+..+..+...+..++..-...+..+.+.++.++.+...+......++-.+..++++++-+ ..+...+
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdL 88 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDL 88 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 310 EMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVK 389 (554)
Q Consensus 310 e~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~k 389 (554)
-..|.....+-..+.-....+.....++.............++.+....-.+-..-...--+-..+-...--.+..+..+
T Consensus 89 aa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak 168 (389)
T KOG4687|consen 89 AADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAK 168 (389)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 008764 390 CQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKL 430 (554)
Q Consensus 390 l~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl 430 (554)
|..|...+..+-.+. .++..+...++-....+..++
T Consensus 169 ~a~LafDLkamideK-----EELimERDa~kcKa~RLnhEL 204 (389)
T KOG4687|consen 169 CAGLAFDLKAMIDEK-----EELIMERDAMKCKAARLNHEL 204 (389)
T ss_pred hhhhhhHHHHHhchH-----HHHHHHHHHHHHHHHHhhhHH
No 387
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=31.07 E-value=3.4e+02 Score=30.97 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008764 286 EKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASEL-------QLREATMQLEELQRELNLVNESKRIVESNVSSM 358 (554)
Q Consensus 286 ~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~-------~i~ele~ele~l~~el~~l~~~~~~le~~L~~l 358 (554)
..+......++++++.++.+++.++.++..++..+..-.. .+..+..++..++.+++.+..+-.+++..+..+
T Consensus 552 ~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 552 AELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 008764 359 EME 361 (554)
Q Consensus 359 e~e 361 (554)
..+
T Consensus 632 ~~~ 634 (638)
T PRK10636 632 LLE 634 (638)
T ss_pred hhh
No 388
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.07 E-value=3.5e+02 Score=23.33 Aligned_cols=88 Identities=18% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------H-------------
Q 008764 278 KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSV-----------------------E------------- 321 (554)
Q Consensus 278 l~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el-----------------------~------------- 321 (554)
+..+...+..+..++..+...+..+...+.++...+..+..-- .
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008764 322 ---ASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTM 365 (554)
Q Consensus 322 ---~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l 365 (554)
....-+..+...++.++..+..+.+.+..+..++..+...+..+
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 389
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=30.70 E-value=2.9e+02 Score=22.38 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 323 SELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWR 399 (554)
Q Consensus 323 ~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~ 399 (554)
+..-+..+..+++.+-.++.........++..+..--.++..++..+-.|+..-.+.+... +.++..|..+++.
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~ 75 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
No 390
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=30.43 E-value=7e+02 Score=26.69 Aligned_cols=266 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred cCCCCCc-cccCCcccCCCcch-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 201 PNNKSGK-HVESGNVTTQSTLA-----------------ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDA 262 (554)
Q Consensus 201 ~~t~~G~-~~~sG~~tGG~~~~-----------------~~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~ 262 (554)
+.+..|. ......|.||.... .-.+..-+.-++.=+-....-|..+..+-..+..-++.+..
T Consensus 67 ~~Ds~~~n~tT~dsp~g~~Sg~~~~p~pp~~pt~~w~~ddpDi~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQs 146 (558)
T PF15358_consen 67 PTDSSGTNSTTEDSPEGCASGELTLPGPPASPTPPWAPDDPDITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQS 146 (558)
T ss_pred CCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCCccHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 008764 263 EKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQL-----REATMQLEEL 337 (554)
Q Consensus 263 e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i-----~ele~ele~l 337 (554)
+-..+.+.++.-..+.++++.....+........+.++..+..-..+...-..++.++.-++.++ ..-+.++.++
T Consensus 147 eCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqdE~prrqe~e~qEL 226 (558)
T PF15358_consen 147 ECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQDETPRRQEAEWQEL 226 (558)
T ss_pred HhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcccCcchhhhhHHHH
Q ss_pred HHHHHHHHHHH-------------------------------------------------HHHHHhHHHHHHHHHHHHHH
Q 008764 338 QRELNLVNESK-------------------------------------------------RIVESNVSSMEMEAQTMTAK 368 (554)
Q Consensus 338 ~~el~~l~~~~-------------------------------------------------~~le~~L~~le~ei~~l~~~ 368 (554)
+..++.--... ...-.-|+.+..++..+..+
T Consensus 227 eqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~~rage~~~~seq~lqk~~s~LEelRrevssLtar 306 (558)
T PF15358_consen 227 EQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPAGWGGGPRAGEGPELSEQELQKVSSGLEELRREVSSLTAR 306 (558)
T ss_pred HHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCccccHHhhcccCccHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008764 369 INSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA 448 (554)
Q Consensus 369 i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~ 448 (554)
..+=+......-..+..+.-++..+-.+.++...+. ......+..++.+.+.+..-.+.-.-.+..|...+..+.
T Consensus 307 w~qEega~qEaLrlLgglggRldgflgqWERaQ~eq-----~q~ar~lqeLR~~~delct~versavs~asLrseLeglg 381 (558)
T PF15358_consen 307 WHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQ-----AQTARGLQELRGRADELCTMVERSAVSVASLRSELEGLG 381 (558)
T ss_pred HHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHhHhHHHHHHHHhhccc
Q ss_pred chhhhhcccCCccccccCccccc
Q 008764 449 TLEDFLIDTASIPEFSRAALPIP 471 (554)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~ 471 (554)
+.+-++...+..+.-+.-|.-.+
T Consensus 382 pvKPilEel~Rq~~~~rrg~d~~ 404 (558)
T PF15358_consen 382 PVKPILEELGRQLQNSRRGPDLS 404 (558)
T ss_pred CcchHHHHHHHHHHhhccCCccc
No 391
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.24 E-value=4.5e+02 Score=28.39 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008764 283 EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDS---VEASELQLREATMQLEELQRELNLVNESKRIVESNV 355 (554)
Q Consensus 283 ~el~~l~~kl~~Le~ele~le~eleele~el~~l~~e---l~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L 355 (554)
..+-.+..+..++..+++.++.++..+..++...... ...+..+...+..++..++.++..++..+...-..+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 392
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.84 E-value=3.8e+02 Score=23.37 Aligned_cols=88 Identities=23% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Q 008764 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLE------------------------------------ 272 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie------------------------------------ 272 (554)
++.+...+..+...+..+..++..+...+.++..-++.+..--.
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 273 ---QMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKS 316 (554)
Q Consensus 273 ---~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l 316 (554)
.+..-..-+...+..+...+..++..+..+..++..+...+...
T Consensus 81 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 81 VEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 393
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.78 E-value=1e+02 Score=26.17 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008764 297 EKIEKMEAEKAELEMALAKSQDSVEASELQL-REATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEE 374 (554)
Q Consensus 297 ~ele~le~eleele~el~~l~~el~~~e~~i-~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~ 374 (554)
+++..-......++.....+..+++.+-..+ .+...-+...+.+-..++.....++.++......+..++.++..|..
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 394
>PLN02678 seryl-tRNA synthetase
Probab=29.49 E-value=4.4e+02 Score=28.74 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008764 283 EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQ---DSVEASELQLREATMQLEELQRELNLVNESKRIVESNV 355 (554)
Q Consensus 283 ~el~~l~~kl~~Le~ele~le~eleele~el~~l~---~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L 355 (554)
.++-.+..+..++..+++.+..++..+..++..+. .....+..++..+..++..++.++..++..+..+-..|
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 395
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.95 E-value=3.2e+02 Score=22.27 Aligned_cols=81 Identities=12% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008764 278 KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQD--SVEASELQLREATMQLEELQRELNLVNESKRIVESNV 355 (554)
Q Consensus 278 l~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~--el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L 355 (554)
+.-+.-.+..+...+..+...-..+...++.+...+..+.. ...+.-.... +..++..++..+..+......++.++
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 008764 356 SSME 359 (554)
Q Consensus 356 ~~le 359 (554)
..++
T Consensus 88 ~~L~ 91 (92)
T PF14712_consen 88 DKLQ 91 (92)
T ss_pred Hhhc
No 396
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.80 E-value=2.8e+02 Score=27.62 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008764 293 AKLEEKIEKMEAEKAELEMALAKSQDSVEASE--LQLREATMQLEELQRELNLVNESKRIVESNVS 356 (554)
Q Consensus 293 ~~Le~ele~le~eleele~el~~l~~el~~~e--~~i~ele~ele~l~~el~~l~~~~~~le~~L~ 356 (554)
...-.++-.++..++.++.....+.+-+.... ..+-.++.+|.+.+.+|+.++.++..+..+..
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 397
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.34 E-value=2.9e+02 Score=21.57 Aligned_cols=63 Identities=27% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDA 290 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~ 290 (554)
++..+..++..|-...+.+..+-..|..++..+..+...+..+.+.....++.+-..+..+..
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
No 398
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=28.00 E-value=8.6e+02 Score=26.93 Aligned_cols=217 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAE- 305 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~e- 305 (554)
..+-..+.....|..... +...+........++...+.-+.........++.++.......-.....+-..|+.-...
T Consensus 187 ~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~ 265 (511)
T PF09787_consen 187 KRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEE 265 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008764 306 ----------KAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEE 375 (554)
Q Consensus 306 ----------leele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~e 375 (554)
++.+..+...+..++..++.+|..+..++.+.+.++..-.......-..+...-........++..+..+
T Consensus 266 ~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~e 345 (511)
T PF09787_consen 266 GFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQE 345 (511)
T ss_pred ccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 376 VEMERALS----MQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSL 447 (554)
Q Consensus 376 l~~~~~~~----~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L 447 (554)
+...+... ..+..++..-..++..+...+..........++.. .+......|-.-|..+..++..-..|
T Consensus 346 l~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~---rl~~lt~~Li~KQ~~lE~l~~ek~al 418 (511)
T PF09787_consen 346 LYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELES---RLTQLTESLIQKQTQLESLGSEKNAL 418 (511)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHH---HHhhccHHHHHHHHHHHHHHhhhhhc
No 399
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=27.99 E-value=8.6e+02 Score=26.93 Aligned_cols=225 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 008764 230 EAMIHRTAELEQKLERMDAEKVDLEEKL-DKMDAEKAELEEKLEQMDAEKAELEE--------KLEKMDAEKAKLEEKIE 300 (554)
Q Consensus 230 ~~l~~el~eLe~~l~~le~ei~eLe~~l-~~l~~e~~~l~~~ie~l~~el~~~e~--------el~~l~~kl~~Le~ele 300 (554)
..+....-.++..+...+...-..+..+ .++...-..+....++.-..+....+ +...+......+.+.+.
T Consensus 196 ~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~ 275 (531)
T PF15450_consen 196 SFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVA 275 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHH
Q 008764 301 KMEAEKAELEMALAKSQ-DSVEASELQLREATMQLEELQRELNLVNESK--------RIVESNVSSMEMEAQTMTAKINS 371 (554)
Q Consensus 301 ~le~eleele~el~~l~-~el~~~e~~i~ele~ele~l~~el~~l~~~~--------~~le~~L~~le~ei~~l~~~i~~ 371 (554)
.++..+......|..+- .++..-...-......++++...+...-..+ ......+..++....-+...+..
T Consensus 276 ~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~ 355 (531)
T PF15450_consen 276 QLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAE 355 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 008764 372 LEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLE 451 (554)
Q Consensus 372 Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~ 451 (554)
+...+.++...+..+..++.--+..+.-.-.+............+..+..=-+.+...+.+++..+..|..++..+..-+
T Consensus 356 l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc 435 (531)
T PF15450_consen 356 LMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKC 435 (531)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred hhh
Q 008764 452 DFL 454 (554)
Q Consensus 452 ~~~ 454 (554)
++.
T Consensus 436 ~~~ 438 (531)
T PF15450_consen 436 DLH 438 (531)
T ss_pred HHH
No 400
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.93 E-value=3.2e+02 Score=21.96 Aligned_cols=57 Identities=12% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 243 LERMDAEKVDLEEKLDKMDAEKAELEEKLEQ---MDAEKAELEEKLEKMDAEKAKLEEKI 299 (554)
Q Consensus 243 l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~---l~~el~~~e~el~~l~~kl~~Le~el 299 (554)
+..+...|+.+..++..+....+.++..+.. +..++..+...+..+..++..+..-+
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 401
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=27.72 E-value=4.8e+02 Score=23.86 Aligned_cols=115 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 254 EEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKM----EAEKAELEMALAKSQDSVEASELQLRE 329 (554)
Q Consensus 254 e~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~l----e~eleele~el~~l~~el~~~e~~i~e 329 (554)
...+....+.=..++..--.....+...-..+......+..+...|+.+ ..++.-+...|.....++..+...+..
T Consensus 30 ~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqK 109 (159)
T PF04949_consen 30 RSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQK 109 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008764 330 ATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAK 368 (554)
Q Consensus 330 le~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~ 368 (554)
.+.++.......++.+..+..+-..|..+-.+-..++-+
T Consensus 110 KEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmK 148 (159)
T PF04949_consen 110 KEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMK 148 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 402
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.43 E-value=6.2e+02 Score=25.07 Aligned_cols=222 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVD----------LEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLE 296 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~e----------Le~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le 296 (554)
.++...-.+...++..+..--..+.. +..-...+......+...-..+...+.++-..+..+........
T Consensus 22 ~el~~f~keRa~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~r 101 (261)
T cd07648 22 KELADFLRERATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKH 101 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008764 297 EKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEV 376 (554)
Q Consensus 297 ~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el 376 (554)
+.+.........+...+......+...+......-.+++.++.... ..+.+..++..+.... ..+...+
T Consensus 102 K~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~-s~k~~eK~~~K~~ka~----------~~Y~~~v 170 (261)
T cd07648 102 KKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENA-SPKEIEKAEAKLKKAQ----------DEYKALV 170 (261)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH----------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcc
Q 008764 377 EMERALSMQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLID 456 (554)
Q Consensus 377 ~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~ 456 (554)
.........+...+...-..+..+..+ ++.-...-+.....-+......+..|-..+...-..+..-.++..|...
T Consensus 171 ~~~~~~~~~~~~~m~~~~~~~Q~lEe~----Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~id~~~Di~~fv~~ 246 (261)
T cd07648 171 EKYNNIRADFETKMTDSCKRFQEIEES----HLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDELTVDKLLRQFVES 246 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHc
Q ss_pred cCC------cccc
Q 008764 457 TAS------IPEF 463 (554)
Q Consensus 457 ~~~------~~~~ 463 (554)
.++ +|+|
T Consensus 247 ~gtG~~~P~~~~f 259 (261)
T cd07648 247 KGTGTEKPELIEF 259 (261)
T ss_pred CCCCCCCCCCCCC
No 403
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.39 E-value=3.8e+02 Score=22.59 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 008764 237 AELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEK-AELEEKLEKMDAEKAKLEEKIEKMEAE-KAELEMALA 314 (554)
Q Consensus 237 ~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el-~~~e~el~~l~~kl~~Le~ele~le~e-leele~el~ 314 (554)
..+...+..+...+..+...+..+......+..........+ ..+..-+..+......+-..++..... ...+...+.
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~ 82 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLE 82 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008764 315 KSQDSVEASELQLREATMQLE 335 (554)
Q Consensus 315 ~l~~el~~~e~~i~ele~ele 335 (554)
.++..+..+..-+...+..+.
T Consensus 83 ~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 83 SLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 404
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=27.39 E-value=7.8e+02 Score=26.25 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008764 286 EKMDAEKAKLEEKIEKMEAEKAELEMALA-KSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQT 364 (554)
Q Consensus 286 ~~l~~kl~~Le~ele~le~eleele~el~-~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~ 364 (554)
..+..++...+..+..++.++..+..... ...............+...+..++.++..+..........+......+..
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 171 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKR 171 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q ss_pred HHHHHHHHH------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008764 365 MTAKINSLE------EEVEMERALS-MQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQE-DLEVAAGKLAECQKT 436 (554)
Q Consensus 365 l~~~i~~Le------~el~~~~~~~-~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qe-el~~a~~kl~e~q~t 436 (554)
...-..... .++...+... .........+...+..+.. ....+..... ++..+...+...+..
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---------~~~~l~~~~~~~~~~~~~~l~~~~~~ 242 (421)
T TIGR03794 172 DRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQ---------ADFQLAGVAEKELETVEARIKEARYE 242 (421)
T ss_pred HHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHH---------HHHhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 008764 437 IQSLGKQLK 445 (554)
Q Consensus 437 I~~L~~ql~ 445 (554)
+..+...+.
T Consensus 243 l~~~~~~l~ 251 (421)
T TIGR03794 243 IEELENKLN 251 (421)
T ss_pred HHHHHHHHh
No 405
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=27.24 E-value=6.8e+02 Score=25.48 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 008764 228 ELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEK---MEA 304 (554)
Q Consensus 228 ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~---le~ 304 (554)
.+...+..+......+..+...+...+-....+...+..+...+..+...+...+..+..........+.-+++ -..
T Consensus 56 ~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~ 135 (327)
T TIGR02971 56 ELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSAS 135 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHH
Q 008764 305 EKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE-----SKRIVESNVSSMEMEAQTMTAKIN 370 (554)
Q Consensus 305 eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~-----~~~~le~~L~~le~ei~~l~~~i~ 370 (554)
++++....+...+..+......+. ..+...+..+..+.. .+...+..+...+..+...+..+.
T Consensus 136 ~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 136 DLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 406
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.19 E-value=1.3e+02 Score=23.62 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCC-ccccccCc
Q 008764 415 EVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTAS-IPEFSRAA 467 (554)
Q Consensus 415 ~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~-~~~~~~~~ 467 (554)
.+..++.+++.+..+++..+..+..|..+++.+....+++...+. .++++..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~ 71 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPG 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCC
No 407
>PHA03011 hypothetical protein; Provisional
Probab=27.02 E-value=3.9e+02 Score=22.63 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 247 DAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAEL 309 (554)
Q Consensus 247 e~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleel 309 (554)
+..+..+...++.+..+.+.+..+..-+..++..++.-+++-.+++.-+..++.+++..+..+
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
No 408
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=26.75 E-value=3.7e+02 Score=22.29 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008764 286 EKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASE-----LQLREATMQLEELQRELNLVNESKRIVESNVSSMEM 360 (554)
Q Consensus 286 ~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e-----~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ 360 (554)
......+......+......+..+...+..+...+.... ..+..+..-+..+...+..+...+..++..+.....
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 361 EAQTMTAKINSLEEEVEMERALSMQITVKCQKLE 394 (554)
Q Consensus 361 ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe 394 (554)
.+.....+...++.=.+...........+.....
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~ 114 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEERREQKE 114 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 409
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=26.70 E-value=4.7e+02 Score=23.51 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008764 291 EKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTA 367 (554)
Q Consensus 291 kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~ 367 (554)
+...+...++.....+......+......+..+......-+.....+...+..+......-+..+..+..|.+.++.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 410
>PRK12704 phosphodiesterase; Provisional
Probab=26.39 E-value=9.3e+02 Score=26.81 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 232 MIHRTAELEQKLERMDAEK-VDLEEKLDKMDAEK-AELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAEL 309 (554)
Q Consensus 232 l~~el~eLe~~l~~le~ei-~eLe~~l~~l~~e~-~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleel 309 (554)
....+...+.+-..+..+. .+.+........+. .++...-.+++.++...+.++.....++..-+..+++-...++..
T Consensus 29 a~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekk 108 (520)
T PRK12704 29 AEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 310 EMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSS---MEMEAQTMTAKINSLEEEVEMERALSMQI 386 (554)
Q Consensus 310 e~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~---le~ei~~l~~~i~~Le~el~~~~~~~~e~ 386 (554)
+..+......+...+..+.....+++.+..+....-.....+...=.. +..--.++......+-.+++..-....+-
T Consensus 109 e~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (520)
T PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 008764 387 TVK 389 (554)
Q Consensus 387 e~k 389 (554)
.++
T Consensus 189 ~a~ 191 (520)
T PRK12704 189 KAK 191 (520)
T ss_pred HHH
No 411
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.33 E-value=3.7e+02 Score=22.20 Aligned_cols=82 Identities=5% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 315 KSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLE 394 (554)
Q Consensus 315 ~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe 394 (554)
.+..-+..+...|..|+..+..--...... ..++..+..+......|..+++..+...........++..++...-
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 008764 395 EEQWRM 400 (554)
Q Consensus 395 ~el~~~ 400 (554)
+.+..+
T Consensus 81 e~Ir~v 86 (89)
T PF13747_consen 81 ETIRAV 86 (89)
T ss_pred HHHHHH
No 412
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.23 E-value=4.4e+02 Score=22.94 Aligned_cols=88 Identities=26% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Q 008764 243 LERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLE------------------------------------ 286 (554)
Q Consensus 243 l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~------------------------------------ 286 (554)
++.+...+..+...+..+...+..+...+.++..-+..++.-..
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 287 ---KMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREA 330 (554)
Q Consensus 287 ---~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~el 330 (554)
.+..-+.-+.+.++.++..++.++..+..+..++......+..+
T Consensus 81 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 81 VEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 413
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.20 E-value=2.8e+02 Score=27.92 Aligned_cols=66 Identities=29% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Q 008764 252 DLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKL-----------------EEKIEKMEAEKAELEMALA 314 (554)
Q Consensus 252 eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~L-----------------e~ele~le~eleele~el~ 314 (554)
.+..++..+..+...+...+..++.++.+.+.++..+....... ++.|++-+.++.+|+.++.
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 008764 315 KSQ 317 (554)
Q Consensus 315 ~l~ 317 (554)
.++
T Consensus 257 ~Lq 259 (259)
T PF08657_consen 257 ELQ 259 (259)
T ss_pred hcC
No 414
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=26.18 E-value=3.8e+02 Score=22.22 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 230 EAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELE-----EKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEA 304 (554)
Q Consensus 230 ~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~-----~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~ 304 (554)
+.....+......+......+..+......+...+.... ..+..+..-+..+...+......+..++..++....
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 305 EKAELEMALAKSQDSVEASELQLREATMQLEELQRE 340 (554)
Q Consensus 305 eleele~el~~l~~el~~~e~~i~ele~ele~l~~e 340 (554)
.+.........+..-...............+....+
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lD 116 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEERREQKELD 116 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=25.99 E-value=7.1e+02 Score=25.32 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 008764 307 AELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKIN---SLEEEVEMERALS 383 (554)
Q Consensus 307 eele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~---~Le~el~~~~~~~ 383 (554)
..+...+...+..+.....++..++..+..++.++..++..+...+.++...+.++...+.-+. .-+.+++..+...
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~ 155 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKAL 155 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 008764 384 MQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAEC 433 (554)
Q Consensus 384 ~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~ 433 (554)
......+..++.+.............-.....+...+..++.+...+..+
T Consensus 156 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~~~ 205 (334)
T TIGR00998 156 LSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKRT 205 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhCc
No 416
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=25.93 E-value=5.6e+02 Score=24.08 Aligned_cols=64 Identities=13% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE 346 (554)
Q Consensus 281 ~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~ 346 (554)
....+.-+..+...+..++.+++..+..+..++..++ +-....+|.++...+..|+..+...+.
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYq--ll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQ--LLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHhHHHHHHHHHHHHHHHHHHHHHHh
No 417
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.89 E-value=4.9e+02 Score=23.35 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008764 285 LEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQT 364 (554)
Q Consensus 285 l~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~ 364 (554)
..++..++..-...+......+..+...+..+..--......+.++......+...+-.+-.....+...-..+..+-+.
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 008764 365 MTAKINSLEEEVEM 378 (554)
Q Consensus 365 l~~~i~~Le~el~~ 378 (554)
+..+++.+..++..
T Consensus 112 L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 112 LRKRLEALEAQLNA 125 (141)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHcC
No 418
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=25.83 E-value=3.6e+02 Score=21.85 Aligned_cols=75 Identities=13% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 259 KMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEE 336 (554)
Q Consensus 259 ~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~ 336 (554)
.+..-++.++..++.+..++.........+..++..--.++..+...+.+++.....++...++ +|..|..+++.
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe---EI~rLr~eLe~ 75 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE---EIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
No 419
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=25.76 E-value=5.1e+02 Score=23.54 Aligned_cols=109 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008764 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEM 360 (554)
Q Consensus 281 ~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ 360 (554)
+-+.-..+...+..|+..+..+...-.....-+..+...+.........-..-.......+...- +-.++..+.....
T Consensus 27 L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~~e~~i~~~~~ 104 (146)
T PF08702_consen 27 LDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYILETKIINQPS 104 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH--HHHHHHHHhhhHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 361 EAQTMTAKINSLEEEVEMERALSMQITVKCQ 391 (554)
Q Consensus 361 ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~ 391 (554)
.+..|+.-+.....++..++.........|+
T Consensus 105 ~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck 135 (146)
T PF08702_consen 105 NIRVLQNILRSNRQKIQRLEQDIDQQERYCK 135 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 420
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.71 E-value=3.9e+02 Score=22.13 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008764 294 KLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLE 373 (554)
Q Consensus 294 ~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le 373 (554)
.++.-+..+...+..|+..+..--...... ..++.++..+...-..+...+...+.+...++.-..++..++...-
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 008764 374 EEVEM 378 (554)
Q Consensus 374 ~el~~ 378 (554)
..+..
T Consensus 81 e~Ir~ 85 (89)
T PF13747_consen 81 ETIRA 85 (89)
T ss_pred HHHHH
No 421
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.44 E-value=5.9e+02 Score=24.16 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 008764 236 TAELEQKLERMDAEK-VDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAE-LEMAL 313 (554)
Q Consensus 236 l~eLe~~l~~le~ei-~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~elee-le~el 313 (554)
+..+...+..+-..+ .-++..+.-.....-........+...+..++.+...+..++..+...++.++....+ .....
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 314 AKSQDSVEASELQLREATMQLEEL 337 (554)
Q Consensus 314 ~~l~~el~~~e~~i~ele~ele~l 337 (554)
.....++..++.....+...++.+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
No 422
>PLN02320 seryl-tRNA synthetase
Probab=25.39 E-value=5.3e+02 Score=28.59 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 241 QKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA--EKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMAL 313 (554)
Q Consensus 241 ~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~--el~~~e~el~~l~~kl~~Le~ele~le~eleele~el 313 (554)
.++-.+..+...+..+++.++.+.+.+..++..... +...+..+.+.+..++..++.++..++.++.++-..|
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 423
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=25.38 E-value=8.4e+02 Score=25.93 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred cCCCCCc-cccCCcccCCCcch--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 201 PNNKSGK-HVESGNVTTQSTLA--------ESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKL 271 (554)
Q Consensus 201 ~~t~~G~-~~~sG~~tGG~~~~--------~~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~i 271 (554)
+....|. -+.+..++|+...+ ...+.++|.++.+-...|++.++.+...+.
T Consensus 232 ~S~~~gSa~~~~n~~~g~~~~n~~~s~~~~l~aileeL~eIk~~q~~Leesye~Lke~~k-------------------- 291 (455)
T KOG3850|consen 232 SSSRPGSAADETNNVPGHGGANPYHSQGAALDAILEELREIKETQALLEESYERLKEQIK-------------------- 291 (455)
T ss_pred ccCCCCccccccCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 008764 272 EQMDAEKAELEEKLEKMDAEKAKLEEKIEKM----EAEKAELEMALAKSQDSVEASE-LQLREATMQLEELQRELNLVNE 346 (554)
Q Consensus 272 e~l~~el~~~e~el~~l~~kl~~Le~ele~l----e~eleele~el~~l~~el~~~e-~~i~ele~ele~l~~el~~l~~ 346 (554)
.++.-+-.-++.-.-+-..|++.+..+ +.++..|..++..+++.+.-.- .........++.++..|.+++-
T Consensus 292 ----rdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl 367 (455)
T KOG3850|consen 292 ----RDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLEL 367 (455)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 008764 347 SKRIVE 352 (554)
Q Consensus 347 ~~~~le 352 (554)
.....+
T Consensus 368 ~qq~qq 373 (455)
T KOG3850|consen 368 QQQQQQ 373 (455)
T ss_pred HHHHHH
No 424
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=25.10 E-value=9.1e+02 Score=26.25 Aligned_cols=239 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH------
Q 008764 230 EAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEK--MDAEKAKLEEKIEK------ 301 (554)
Q Consensus 230 ~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~--l~~kl~~Le~ele~------ 301 (554)
+.+..+-..+.....-.-.++..++.+++.+-..+.-....+..+..++.++...++- +.....+|-.....
T Consensus 220 ~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~q 299 (554)
T KOG4677|consen 220 EAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQ 299 (554)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccC
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHH
Q 008764 302 -------MEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNE----SKRIVESNVSSMEMEAQTMTAKIN 370 (554)
Q Consensus 302 -------le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~----~~~~le~~L~~le~ei~~l~~~i~ 370 (554)
...+.+++.-+..-..+++...+.++..|..++.+++.+...++. ++...-.+...+..-...+...+.
T Consensus 300 s~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~e 379 (554)
T KOG4677|consen 300 SPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYE 379 (554)
T ss_pred CCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHH
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 371 SLEEEVEMERALS--------MQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGK 442 (554)
Q Consensus 371 ~Le~el~~~~~~~--------~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ 442 (554)
-+..+.+-..... ..+-.+-.+|..-..+++...---...........+..-+.....-++.+-.....|.-
T Consensus 380 c~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~ 459 (554)
T KOG4677|consen 380 CFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNA 459 (554)
T ss_pred HHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHhhchhhhhcccCCccccccCcc
Q 008764 443 QLKSLATLEDFLIDTASIPEFSRAAL 468 (554)
Q Consensus 443 ql~~L~~~~~~~~~~~~~~~~~~~~~ 468 (554)
++..|+....+..++.-..+.++++.
T Consensus 460 ~lerLq~~~N~~~~v~~~~~~n~~~~ 485 (554)
T KOG4677|consen 460 PLERLQEYVNLVEDVDTKLNLNTKFK 485 (554)
T ss_pred hHHHHHHHhccccccceeeccCCCcc
No 425
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=25.01 E-value=2e+02 Score=24.87 Aligned_cols=55 Identities=29% Similarity=0.177 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008764 2 KLEFESRLLELQSKAETAKSEPSYHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAI 61 (554)
Q Consensus 2 ~~~le~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~ 61 (554)
|.+|=.++..+++++..-.++ ...|+..+..+-+|+..|+-|-.-|...+.....
T Consensus 3 k~elfd~l~~le~~l~~l~~e-----l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKE-----LGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 426
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=24.91 E-value=3.8e+02 Score=21.80 Aligned_cols=86 Identities=10% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008764 281 LEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASEL--QLREATMQLEELQRELNLVNESKRIVESNVSSM 358 (554)
Q Consensus 281 ~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~--~i~ele~ele~l~~el~~l~~~~~~le~~L~~l 358 (554)
.+.-+.-+...+..+...+..+......+...+..+...+..... .+...-.... ...++..+.+....+...+..+
T Consensus 5 a~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~l 83 (92)
T PF14712_consen 5 AEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKL 83 (92)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 008764 359 EMEAQTMTA 367 (554)
Q Consensus 359 e~ei~~l~~ 367 (554)
+..+..++.
T Consensus 84 k~R~~~L~q 92 (92)
T PF14712_consen 84 KKRADKLQQ 92 (92)
T ss_pred HHHHHhhcC
No 427
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=24.84 E-value=4e+02 Score=23.20 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhhhh
Q 008764 6 ESRLLELQSKAETAKSEPSYHMDPDLFEKLEFL------EKENSALKMELLIQSEELEIRAIERDLSNQAAETASKQHLD 79 (554)
Q Consensus 6 e~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~------eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~~q~~e 79 (554)
+.++..|++|+..|++.....-...|...+..+ ..-.......|.....++..++.++.......+. ..+..
T Consensus 23 ~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K 100 (115)
T PF06476_consen 23 EAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAK 100 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHH
Q ss_pred HHHHHHHHHHHHH
Q 008764 80 SIKKVAKLEAECR 92 (554)
Q Consensus 80 ~~~ki~kLEae~q 92 (554)
..++++.-..+.+
T Consensus 101 ~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 101 RQKKLAEAKAELK 113 (115)
T ss_pred HHHHHHHHHHHHh
No 428
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=24.75 E-value=3.7e+02 Score=21.53 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008764 292 KAKLEEKIEKMEAEKAELEMALAKSQDSVEASE-LQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQ 363 (554)
Q Consensus 292 l~~Le~ele~le~eleele~el~~l~~el~~~e-~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~ 363 (554)
++..+..|..+..+-=.+...|.-++..+.... ..+..+..+.-+++.++..+...+......+..+...+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 429
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.74 E-value=7e+02 Score=24.78 Aligned_cols=159 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEK 306 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~el 306 (554)
.+..++.+....+...+..++.=...+-.+...+..++.++-.....+..--.++..-++.+..-+...-..+..+....
T Consensus 51 ~eF~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 51 LEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 307 -AELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQ 385 (554)
Q Consensus 307 -eele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e 385 (554)
...-..+..+..-+..++.-+..-.+..-+++..++.+ ..-..++..++.+++.++..++....++..+-.....
T Consensus 131 ~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l----~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~ 206 (240)
T cd07667 131 TEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAV----ALRKEERPKVPTDVEKCQDRVECFNADLKADMERWQN 206 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 008764 386 ITVK 389 (554)
Q Consensus 386 ~e~k 389 (554)
....
T Consensus 207 ~K~~ 210 (240)
T cd07667 207 NKRQ 210 (240)
T ss_pred HHHH
No 430
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.65 E-value=2.8e+02 Score=27.82 Aligned_cols=73 Identities=15% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 231 AMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA----------EKAELEEKLEKMDAEKAKLEEKIE 300 (554)
Q Consensus 231 ~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~----------el~~~e~el~~l~~kl~~Le~ele 300 (554)
...+++..|..++..+...+..|+.++.....++..+......-.. .....++.+..-..++.+|+.++.
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 008764 301 KME 303 (554)
Q Consensus 301 ~le 303 (554)
+++
T Consensus 257 ~Lq 259 (259)
T PF08657_consen 257 ELQ 259 (259)
T ss_pred hcC
No 431
>PLN02320 seryl-tRNA synthetase
Probab=24.61 E-value=4.5e+02 Score=29.16 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008764 283 EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSM 358 (554)
Q Consensus 283 ~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~l 358 (554)
.++-.+..+...+..+++.+..++..+..++.. ........++..+...++.++..++..+..++.++..+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 432
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=24.56 E-value=6.6e+02 Score=24.40 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 257 LDKMDAEKAELEEKLEQMDAEKAELE-----------EKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASEL 325 (554)
Q Consensus 257 l~~l~~e~~~l~~~ie~l~~el~~~e-----------~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~ 325 (554)
+..+..-+......++.....+..++ .....+...+..+++.+..+..+++.+...-...+.....
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~--- 175 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE--- 175 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008764 326 QLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINS 371 (554)
Q Consensus 326 ~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~ 371 (554)
.+..|+....++-...-.++.....++.++..++.+....+...+.
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~~ 221 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQQ 221 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
No 433
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.53 E-value=9.3e+02 Score=26.16 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAE--KAELEEKLEKMDAEKAKLEEKIEKMEAEK 306 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~e--l~~~e~el~~l~~kl~~Le~ele~le~el 306 (554)
+..-+..++.+..... ...+...+.++......+......+..++.. +-+-+........-+..|+.++-.++.++
T Consensus 225 L~~sE~~VN~Ls~rar--~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL 302 (434)
T PRK15178 225 LSFAEQHVNTVSARMQ--KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEY 302 (434)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 307 AELEMALAKSQDSVEASELQLREATMQLEELQRELN------LVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMER 380 (554)
Q Consensus 307 eele~el~~l~~el~~~e~~i~ele~ele~l~~el~------~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~ 380 (554)
..+...+..-...+..++.+|..++.++...+.++. .+...+.+.+.---..+---..+..-+..++.-.-+..
T Consensus 303 ~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~ 382 (434)
T PRK15178 303 AQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQAL 382 (434)
T ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 008764 381 ALS 383 (554)
Q Consensus 381 ~~~ 383 (554)
...
T Consensus 383 RQ~ 385 (434)
T PRK15178 383 RER 385 (434)
T ss_pred hhh
No 434
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=24.51 E-value=7.5e+02 Score=25.05 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 008764 312 ALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEE------EVEMERALSMQ 385 (554)
Q Consensus 312 el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~------el~~~~~~~~e 385 (554)
.|..+...+.-+-.++.+++..+..--.+....-+.+...|..+.........+..+|..|.. .+..+++++..
T Consensus 97 dl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvr 176 (271)
T PF13805_consen 97 DLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVR 176 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh----hhcccCCcc
Q 008764 386 ITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLED----FLIDTASIP 461 (554)
Q Consensus 386 ~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~----~~~~~~~~~ 461 (554)
++....-.+.+|..++. ...++-+..--.-+.+|-++..-|..--+.|-.+-+ ..|++..+|
T Consensus 177 aEae~lvaEAqL~n~kR--------------~~lKEa~~~~f~Al~E~aEK~~Ila~~gk~Ll~lldd~pv~PG~~r~~Y 242 (271)
T PF13805_consen 177 AEAENLVAEAQLSNIKR--------------QKLKEAYSLKFDALIERAEKQAILAEYGKRLLELLDDTPVVPGDTRPPY 242 (271)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------TTS-----
T ss_pred HHHHhhHHHHHHHHhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q ss_pred c
Q 008764 462 E 462 (554)
Q Consensus 462 ~ 462 (554)
+
T Consensus 243 ~ 243 (271)
T PF13805_consen 243 D 243 (271)
T ss_dssp -
T ss_pred C
No 435
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=24.45 E-value=9.5e+02 Score=26.21 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhH
Q 008764 291 EKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQL---------------EELQRELNLVNESKRIVESNV 355 (554)
Q Consensus 291 kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~el---------------e~l~~el~~l~~~~~~le~~L 355 (554)
.+..++.+-+.+...+-.+..-....+-.+...-.--..-..++ .+++..-..-++-...++.+-
T Consensus 65 rlr~leeEqerL~ssLlaLsSHFAqVQfRirQ~vea~p~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~lekq~ 144 (621)
T KOG3759|consen 65 RLRQLEEEQERLNSSLLALSSHFAQVQFRIRQMVEADPSERLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLEKQN 144 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCcccccccccccccccchhhhhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHH
Q 008764 356 SSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQ------QIAKSNAEVKIKQEDLEVAAGK 429 (554)
Q Consensus 356 ~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~------~~~~~~~~lk~~qeel~~a~~k 429 (554)
..-..=+..++.++..|+.-....-...-=--.-+++...-+.++.+.+++. ....+..++.. .+.....=
T Consensus 145 e~qkeLi~QLk~Ql~dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~i~~lsteelr~qVD~---A~~q~VnP 221 (621)
T KOG3759|consen 145 ERQKELIKQLKEQLEDLERTAYENGEGELPQTVILEKQKAILDELREKLELNLDIDKLSTEELRRQVDD---ALKQLVNP 221 (621)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHH---HHHHHhCh
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhcccCCc----cccccCcccccCCcC
Q 008764 430 LAECQKTIQSLGKQLKSLATLEDFLIDTASI----PEFSRAALPIPKTVG 475 (554)
Q Consensus 430 l~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 475 (554)
+..-..-+..|+.|+..|..+.+|+.+..-. |--..+++..|..||
T Consensus 222 ~k~KeQLV~QLkTQItDLErFInFlQ~e~~e~s~~p~~~~g~hs~~~sg~ 271 (621)
T KOG3759|consen 222 FKEKEQLVDQLKTQITDLERFINFLQDEVGENSNQPLQTRGGHSEPKSGG 271 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCccccc
No 436
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=24.42 E-value=4e+02 Score=23.73 Aligned_cols=68 Identities=19% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHH
Q 008764 7 SRLLELQSKAETAKSEPS-YHMDPDLFEKLEFLEKENSALKMELLIQSEELEIRAIERDLSNQAAETAS 74 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~rl~~~eke~~~l~~el~~l~~el~~~~~e~~~~~~~~e~~~ 74 (554)
..|.-|++..-+-+-+-. ++-+..=..+-..+|++...|..+|+.|..++.....|++......+.+.
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 437
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=24.38 E-value=4.5e+02 Score=22.44 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008764 299 IEKMEAEKA--ELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEM 360 (554)
Q Consensus 299 le~le~ele--ele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ 360 (554)
+.+++..+. ....++..+...+.....+|.++..++...-..+..+...+..+..+|..++.
T Consensus 39 L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E~ 102 (102)
T PF01519_consen 39 LTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKMES 102 (102)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 438
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.15 E-value=6.2e+02 Score=23.95 Aligned_cols=155 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 270 KLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAEL----------------EMALAKSQDSVEASELQLREATMQ 333 (554)
Q Consensus 270 ~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleel----------------e~el~~l~~el~~~e~~i~ele~e 333 (554)
++......-...-..+..+..++......+.+++..+..- ...+..+-..+++.+.....|..-
T Consensus 3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 008764 334 LEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQI----TVKCQKLEEEQWRMKQEVELQQI 409 (554)
Q Consensus 334 le~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~----e~kl~eLe~el~~~~~e~~~~~~ 409 (554)
-.-++.+++.+......+...+..+..+...+..++..-+............+ ..++-.|+.++..+..
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr------- 155 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRR------- 155 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-------
Q ss_pred HhhHHHHHHHHH-HHHHHHHHHHHH
Q 008764 410 AKSNAEVKIKQE-DLEVAAGKLAEC 433 (554)
Q Consensus 410 ~~~~~~lk~~qe-el~~a~~kl~e~ 433 (554)
...+++...+ +|......+..|
T Consensus 156 --~f~elr~~TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 156 --QFAELRTATERDLSDMRAEFART 178 (182)
T ss_pred --HHHHHHHHHHhhHHHHHHHHHHH
No 439
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=23.80 E-value=9e+02 Score=25.72 Aligned_cols=105 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-
Q 008764 278 KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEEL----QRELNLVNESKRIVE- 352 (554)
Q Consensus 278 l~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l----~~el~~l~~~~~~le- 352 (554)
+..+-.++.........|++.++.+ ++.+..++.-+.+.+.+.+-....|+..+.++ +.++..++.++..++
T Consensus 262 l~aileeL~eIk~~q~~Leesye~L---ke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmee 338 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERL---KEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEE 338 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 353 -------SNVSSMEMEAQTMTAKINSLEEEVEMERALSMQ 385 (554)
Q Consensus 353 -------~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e 385 (554)
.+...++..++.++.+|..++...........+
T Consensus 339 rvaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e 378 (455)
T KOG3850|consen 339 RVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQLE 378 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=23.78 E-value=26 Score=39.82 Aligned_cols=202 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 008764 239 LEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLE--EKIEKMEAEKAELEMALAKS 316 (554)
Q Consensus 239 Le~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le--~ele~le~eleele~el~~l 316 (554)
|...+..+...+..+.....+-..++..+..+++.+..++......+......-..+- ..++.+...+..++.+...-
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R 161 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERR 161 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 317 QDSVEASELQLREATMQLE-ELQ-RELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLE 394 (554)
Q Consensus 317 ~~el~~~e~~i~ele~ele-~l~-~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe 394 (554)
...+..+...|..+-..|. ... ......-.........+.--...+..|...+..|+.+.........++..+|..|+
T Consensus 162 ~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW 241 (619)
T PF03999_consen 162 LEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELW 241 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH----------HHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 008764 395 EEQWRMKQEVELQ----------QIAKSNAEVKIKQE-DLEVAAGKLAECQKTIQSL 440 (554)
Q Consensus 395 ~el~~~~~e~~~~----------~~~~~~~~lk~~qe-el~~a~~kl~e~q~tI~~L 440 (554)
..|.--..+.+.+ .+..+..++..+++ ....+..=+.++...|..|
T Consensus 242 ~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~el 298 (619)
T PF03999_consen 242 NRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEEL 298 (619)
T ss_dssp ---------------------------------------------------------
T ss_pred HHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 441
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.56 E-value=3.6e+02 Score=21.04 Aligned_cols=63 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008764 299 IEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEME 361 (554)
Q Consensus 299 le~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~e 361 (554)
+..++..++.+-.....+..+-..+..++..+..+-..+..+.+.+...+..+-.+|..++..
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq~ 64 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQH 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
No 442
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=23.26 E-value=9.9e+02 Score=26.00 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 225 LRAELEAMIHRTAELEQKLERM---DAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEK 301 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~l---e~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~ 301 (554)
+..++++...-+..--+.++.+ ..-...|...-+.+..+.......+..+...+...+.++..+...+......+..
T Consensus 184 lkvrlqe~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~ 263 (554)
T KOG4677|consen 184 LKVRLQEVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIH 263 (554)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008764 302 MEAEKAELEMALAKSQDSVEASELQL-----------------REATMQLEELQRELNLVNESKRIVESNVSSMEMEAQT 364 (554)
Q Consensus 302 le~eleele~el~~l~~el~~~e~~i-----------------~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~ 364 (554)
..+++.+....+..+. +...+.++ .....++++++-++.--.+.+..+..++..+..++.+
T Consensus 264 ~kKe~de~k~~~~l~~--~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d 341 (554)
T KOG4677|consen 264 FKKEIDEQKLLLDLFR--FLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIID 341 (554)
T ss_pred HHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008764 365 MTAKINSLEEEVEMERALS----MQITVKCQKLEEEQWRMKQEVELQQ------IAKSNAEVKIKQEDLEVAAGKLAECQ 434 (554)
Q Consensus 365 l~~~i~~Le~el~~~~~~~----~e~e~kl~eLe~el~~~~~e~~~~~------~~~~~~~lk~~qeel~~a~~kl~e~q 434 (554)
++.++..++.........+ ..+......+...++.+..+.+... .......+..++.+|.+....+
T Consensus 342 ~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l---- 417 (554)
T KOG4677|consen 342 IEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARL---- 417 (554)
T ss_pred HHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHH----
Q ss_pred HHHHHHHHHHHHhhchhhhhccc
Q 008764 435 KTIQSLGKQLKSLATLEDFLIDT 457 (554)
Q Consensus 435 ~tI~~L~~ql~~L~~~~~~~~~~ 457 (554)
+...+..+...+.+....+.++
T Consensus 418 -~~r~~~~s~~~l~~~~~qLt~t 439 (554)
T KOG4677|consen 418 -KLRAWNDSVDALFTTKNQLTYT 439 (554)
T ss_pred -HHHhhhhhHHHHhchhHHHHHH
No 443
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.00 E-value=3.8e+02 Score=21.07 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 299 IEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVE-SNVSSMEMEAQTMTAKINSLEEEVE 377 (554)
Q Consensus 299 le~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le-~~L~~le~ei~~l~~~i~~Le~el~ 377 (554)
+..+..++...-..+..... ......+..++..+++...-|..+.-+...+. +.-..+...+..++..+..+..++.
T Consensus 1 f~~l~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred H
Q 008764 378 M 378 (554)
Q Consensus 378 ~ 378 (554)
+
T Consensus 79 ~ 79 (79)
T PF05008_consen 79 K 79 (79)
T ss_dssp H
T ss_pred C
No 444
>PRK15396 murein lipoprotein; Provisional
Probab=22.95 E-value=4.1e+02 Score=21.50 Aligned_cols=47 Identities=9% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008764 326 QLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSL 372 (554)
Q Consensus 326 ~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~L 372 (554)
++..|..++..+..+++.+......+...+...+.|..+...+|+..
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 445
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.88 E-value=9.6e+02 Score=25.72 Aligned_cols=261 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH------------HHHHhhhhcHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHhhc
Q 008764 35 LEFLEKENSALKMELLIQSEELE------------IRAIERDLSNQAAETASKQHLDSIKKVA-KLEAECRRLKAMACRA 101 (554)
Q Consensus 35 l~~~eke~~~l~~el~~l~~el~------------~~~~e~~~~~~~~e~~~~q~~e~~~ki~-kLEae~q~lr~~~~k~ 101 (554)
++++...|..++.+|...+..-+ .=...........+.-+........+++ ||+.-+++|+-+....
T Consensus 6 ~~~l~~Ki~~~~eqi~~e~~~rd~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 6 IDHLQQKILKLKEQIKVEQTARDENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred ----CCcccccc----ccccCcccccccccchhhhhhHHHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhhhhhccc--c
Q 008764 102 ----SSTNDHKS----AAASSNCAESLVDSQSDSWERLNAVEMDIRKMGGTEPNMSEPSCSDSWASALIAELDQFKN--E 171 (554)
Q Consensus 102 ----~~~~~~~~----~~~~~~~~~~~~~~~~~~g~rl~~ve~~~~K~~~~~~~~~~~~~~~~~a~~li~~~~~~~~--~ 171 (554)
.|.+..+. .+.++..+. .+.-++...+++.+-+|.. .
T Consensus 86 ~~~~~p~~~~~~~~~~l~~v~~~ik---------------------------------~g~sg~s~~v~skPrEfA~lik 132 (395)
T PF10267_consen 86 SSSRQPKEVLRDMGQGLKDVGGNIK---------------------------------GGLSGLSGAVVSKPREFAHLIK 132 (395)
T ss_pred CCCCCCchhhhcccccccccccccc---------------------------------CCCcchhHHHHhCcHHHHhccc
Q ss_pred ccCCCceeccCchh---hcchhhhhhhceeeecCCC----------CC---c-cccCCcccCCCcch-----------hh
Q 008764 172 KAVNRNLSASSPEI---DLMDDFLEMEQLAAMPNNK----------SG---K-HVESGNVTTQSTLA-----------ES 223 (554)
Q Consensus 172 ~~~g~~~v~~~~~~---~l~~~~~emerlvtl~~t~----------~G---~-~~~sG~~tGG~~~~-----------~~ 223 (554)
.-||..=-+.++.. ....++ .-..++... +. . -.++|++..|+... ..
T Consensus 133 NkFGSADNI~sl~~~~~~~~~~~----~~~~l~~s~~~~~~~ky~S~d~SecSS~tS~S~~~~s~~~~~~~~~~~~~~~~ 208 (395)
T PF10267_consen 133 NKFGSADNISSLKDSLDEPNPDS----GPRSLSGSSTLTASPKYGSEDSSECSSVTSGSIDANSNSSNSGGSSQGSSVSS 208 (395)
T ss_pred CCCCCCCccccccccccccCCCC----CCcCCCCCcccccccccCcccccccccCCCCCCCCCCCCCCCCcccccccccc
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 224 SLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKME 303 (554)
Q Consensus 224 ~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le 303 (554)
.....+..+..++.++......++..+..|+.. +..++..+...+++-.-....+++.+.++.. --.
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e----------lHq 275 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQLNDLTE----------LHQ 275 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------HHH
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 304 AEKAELEMALAKSQDSVE-ASELQLREATMQLEELQRELNLVN 345 (554)
Q Consensus 304 ~eleele~el~~l~~el~-~~e~~i~ele~ele~l~~el~~l~ 345 (554)
.++..|..++..+++.+. .......++..-++.++..+.+++
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 446
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=22.85 E-value=6.8e+02 Score=23.94 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 265 AELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLV 344 (554)
Q Consensus 265 ~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l 344 (554)
+.+-..+..-...+.+.+-....+...+..+++.|..-+.....|..++.-....-......-.....+...|..+...+
T Consensus 87 E~~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 87 EAIYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 008764 345 NESKRIVESNVSSMEMEAQT 364 (554)
Q Consensus 345 ~~~~~~le~~L~~le~ei~~ 364 (554)
+..+..+..++..++.+.+.
T Consensus 167 qaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 167 QAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHhcC
No 447
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=22.78 E-value=2.8e+02 Score=22.77 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 368 KINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 368 ~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
+++.+..++++.+....++..+++.|+.+......
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.75 E-value=1.3e+03 Score=27.38 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 248 AEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQL 327 (554)
Q Consensus 248 ~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i 327 (554)
.....+..++..+...+...+.....+..+......-...+..+...++.++..++.+...+..++.........+...-
T Consensus 467 ~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer 546 (913)
T KOG0244|consen 467 QKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEER 546 (913)
T ss_pred HHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 328 REATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWR 399 (554)
Q Consensus 328 ~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~ 399 (554)
...-+.++.--..+.........+-............+...|..++...-.+-....+-..++........+
T Consensus 547 ~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~K 618 (913)
T KOG0244|consen 547 VQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEK 618 (913)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
No 449
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.68 E-value=1.1e+03 Score=26.47 Aligned_cols=101 Identities=16% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 233 IHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDA-----EKAELEEKLEKMDAEKAKLEEKIEKMEAEKA 307 (554)
Q Consensus 233 ~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~-----el~~~e~el~~l~~kl~~Le~ele~le~ele 307 (554)
+.++..+..-+..+.+.+.....++...+.+...-...++..-. .+.+.. .+..+..++..|+++++....+++
T Consensus 391 ~d~id~i~~l~k~~na~V~~~N~ri~nf~k~~~~sk~~le~~~v~~~~~~VQe~~-~Y~g~ekk~n~LE~e~kn~~~ev~ 469 (758)
T COG4694 391 KDEIDAIKDLIKKANAQVVNHNERIKNFEKQKKSSKEQLEKFLVNEFKSDVQEYN-KYCGLEKKINNLEKEIKNNQEEVK 469 (758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 308 ELEMALAKSQDSVEASELQLREATMQL 334 (554)
Q Consensus 308 ele~el~~l~~el~~~e~~i~ele~el 334 (554)
.+..++..++.-+....--+.++.+.+
T Consensus 470 kls~ei~~ie~~l~~~~~~vke~nq~l 496 (758)
T COG4694 470 KLSNEIKEIEKFLVSIKPIVKEINQTL 496 (758)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHH
No 450
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=22.62 E-value=8e+02 Score=25.07 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHhhhhcHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHhh
Q 008764 31 LFEKLEFLEKENSALKMELLIQSEELE--IRAIERDLSNQAAETASKQHLDSIKKVAKLEAECRRLK---AMACR 100 (554)
Q Consensus 31 l~~rl~~~eke~~~l~~el~~l~~el~--~~~~e~~~~~~~~e~~~~q~~e~~~ki~kLEae~q~lr---~~~~k 100 (554)
+...+..+..........|+.--.++- +..+|+++++.--.+-...+.+.-.++..|++-+||+| .++.|
T Consensus 22 m~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVek 96 (324)
T PF12126_consen 22 MRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEK 96 (324)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
No 451
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.60 E-value=4.7e+02 Score=28.02 Aligned_cols=58 Identities=29% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 289 DAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRI 350 (554)
Q Consensus 289 ~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~ 350 (554)
..-+..++.++.+++.+++++...+.... ....++.+++.+++.+..++..++.-+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 452
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.48 E-value=7.5e+02 Score=24.35 Aligned_cols=183 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q 008764 257 LDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEAS-----ELQLREAT 331 (554)
Q Consensus 257 l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~-----e~~i~ele 331 (554)
+..+..-+..+..++.+-..-+.+....+..+..+++.+...++.+-....++-..+..+-.-+..+ ...+...-
T Consensus 3 ~~~~~~~~~~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l 82 (234)
T cd07664 3 VNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRAL 82 (234)
T ss_pred hhHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 332 MQLEELQRELNLVNESKRIVE-SNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIA 410 (554)
Q Consensus 332 ~ele~l~~el~~l~~~~~~le-~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~ 410 (554)
..+.+....+..+.......+ ..+...-.+...+-.-+..+-..-.+.......+...+.+.+..+.++.. .
T Consensus 83 ~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~-------~ 155 (234)
T cd07664 83 SQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQY-------A 155 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 411 KSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKS 446 (554)
Q Consensus 411 ~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~ 446 (554)
.....+.....++..+..+...+++....+...++.
T Consensus 156 ~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~ 191 (234)
T cd07664 156 NKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRK 191 (234)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 453
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.46 E-value=5.6e+02 Score=22.86 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 344 VNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQ 402 (554)
Q Consensus 344 l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~ 402 (554)
++.+-..++..-..|+-|..+++.+|..|+.+....+.....+..+++-|+..+..-..
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~ 67 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERA 67 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 454
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=22.30 E-value=1.4e+03 Score=27.26 Aligned_cols=222 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
Q 008764 225 LRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAE----------------------------KAELEEKLEQMDA 276 (554)
Q Consensus 225 l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e----------------------------~~~l~~~ie~l~~ 276 (554)
++..+..+...+..++..++.++.+....+..+..+..+ +..+.+.+.++..
T Consensus 555 ~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~~ 634 (984)
T COG4717 555 IRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTH 634 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 277 EKAELEEKLEKMDAEKAKLEEKIEK-------------MEAEKAELEMALAK-SQDSVEASELQLREATMQLEELQRELN 342 (554)
Q Consensus 277 el~~~e~el~~l~~kl~~Le~ele~-------------le~eleele~el~~-l~~el~~~e~~i~ele~ele~l~~el~ 342 (554)
++..+..+...+..++..+-..++. +....+....+-.. ++..+.-.+.....++.++...+.++.
T Consensus 635 q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~kei~ 714 (984)
T COG4717 635 QVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEIL 714 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH------------------HHHHHHHhHHHHHHHHH----------------HHH-HHHHHHHHHHHHHHHHHHHHH
Q 008764 343 LVNE------------------SKRIVESNVSSMEMEAQ----------------TMT-AKINSLEEEVEMERALSMQIT 387 (554)
Q Consensus 343 ~l~~------------------~~~~le~~L~~le~ei~----------------~l~-~~i~~Le~el~~~~~~~~e~e 387 (554)
.+=. .....++++..+...+. .+. .+...++..++.......++.
T Consensus 715 dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~ 794 (984)
T COG4717 715 DLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELH 794 (984)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008764 388 VKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLAT 449 (554)
Q Consensus 388 ~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~ 449 (554)
+.+..+..++..+...- ..+.+..+.....+++...+.+-+.+.-...-+...+..+..
T Consensus 795 a~v~~~~~qi~~lE~g~---~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke 853 (984)
T COG4717 795 AQVAALSRQIAQLEGGG---TVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKE 853 (984)
T ss_pred HHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 455
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=22.26 E-value=9.2e+02 Score=25.29 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 260 MDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMAL-AKSQDSVEASELQLREATMQLEELQ 338 (554)
Q Consensus 260 l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el-~~l~~el~~~e~~i~ele~ele~l~ 338 (554)
+..-+.-+-..+..+......+..+...+......+..+++++-..+.+++..+ .+.-.-|.+.+.+|.++...|..++
T Consensus 128 i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 128 IRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHH
Q 008764 339 RELNLVNES 347 (554)
Q Consensus 339 ~el~~l~~~ 347 (554)
..-......
T Consensus 208 ~~~~~~~~~ 216 (342)
T PF06632_consen 208 EEEKSPKQE 216 (342)
T ss_dssp HHHHHHH--
T ss_pred ccccchhhh
No 456
>PF15456 Uds1: Up-regulated During Septation
Probab=22.14 E-value=5.5e+02 Score=22.67 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAEL-----------EEKLEQMDAEKAELEEKLEKMDAEKAKL 295 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l-----------~~~ie~l~~el~~~e~el~~l~~kl~~L 295 (554)
++++.+..++..|...+..+...+. ++.++...-..+..+ ...+..-..++......+..+..++..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008764 296 EEKIEKMEAEKAELEMALAKSQ 317 (554)
Q Consensus 296 e~ele~le~eleele~el~~l~ 317 (554)
++.+..+...+=+....+-.+.
T Consensus 101 e~R~~~~~~rLLeH~AavL~lt 122 (124)
T PF15456_consen 101 ENRLAEVRQRLLEHTAAVLQLT 122 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 457
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=22.03 E-value=5.7e+02 Score=22.80 Aligned_cols=119 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Q 008764 243 LERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEK---------------MEAEKA 307 (554)
Q Consensus 243 l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~---------------le~ele 307 (554)
++.++..+.....+|+....++..+...+.....-+......++.....+.+ .++.. ....+.
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~~~~a~~P~~~~~~~wqlkvr 80 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE--AEIKQDEFFANNPPHEYGRGWQLKVR 80 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCTT-TTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhcccccccCCCccccccHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008764 308 ELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQ 363 (554)
Q Consensus 308 ele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~ 363 (554)
.+...+..-+..+...+..+..+..+|...+.-|.....++...+......+..+.
T Consensus 81 ~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl~ 136 (136)
T PF11570_consen 81 RAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKLN 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccC
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.97 E-value=1.1e+03 Score=26.26 Aligned_cols=167 Identities=9% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 264 KAELEEKLEQMDAE-KAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELN 342 (554)
Q Consensus 264 ~~~l~~~ie~l~~e-l~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~ 342 (554)
..-+...++-|... +...-.-...++..+..+...+++--.++..++.++..+.+....+...+.+.....+.+...+.
T Consensus 561 ~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~ 640 (741)
T KOG4460|consen 561 LQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMK 640 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHH-----------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008764 343 LVNESK-----------RIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQKLEEEQWRMKQEVELQQIAK 411 (554)
Q Consensus 343 ~l~~~~-----------~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~~~e~~~~~~~~ 411 (554)
.+...- ..+...+..+-.+...+..-|+.+.....+.+.........+.+-.-.+..... ..
T Consensus 641 ~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~-------~~ 713 (741)
T KOG4460|consen 641 KLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQR-------KC 713 (741)
T ss_pred HHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHH-------HH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 412 SNAEVKIKQEDLEVAAGKLAECQKTI 437 (554)
Q Consensus 412 ~~~~lk~~qeel~~a~~kl~e~q~tI 437 (554)
+..-++++...+.....+...+....
T Consensus 714 iqsiL~~L~~~i~~~~k~VK~i~~~v 739 (741)
T KOG4460|consen 714 IQSILKELGEHIREMVKQVKDIRNHV 739 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
No 459
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=21.78 E-value=1.1e+03 Score=25.96 Aligned_cols=181 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 304 AEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALS 383 (554)
Q Consensus 304 ~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~ 383 (554)
..+.-+++++..++..+.....+|..|++..+++..++-.+...-+....-+...+.|+...-.++-.--.+-=-.++..
T Consensus 597 eki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv~KKe~ 676 (790)
T PF07794_consen 597 EKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEY 676 (790)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccCCcccc
Q 008764 384 MQITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLATLEDFLIDTASIPEF 463 (554)
Q Consensus 384 ~e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~~~~~~~~~~~~~~~~ 463 (554)
..++..-.+++..+.-+.+ .....|+.. .+.-.++..+..++..++.-+ -.||-...--+|..
T Consensus 677 t~le~qAaEvesNlaLidq---------------i~kaaIdlt-vEkprlqAeLdd~ea~ck~ke-VSDftlSKLdlpqV 739 (790)
T PF07794_consen 677 TVLEGQAAEVESNLALIDQ---------------ITKAAIDLT-VEKPRLQAELDDLEARCKSKE-VSDFTLSKLDLPQV 739 (790)
T ss_pred HHHHHHHHHHHhhHHHHHH---------------HHHHHHHHH-HhhhHHHhhchHHHhhhhhcc-cccceeccCCchhh
Q ss_pred ccCcccccCCcCCccccCCCCccccCCCCCCCCccCCC
Q 008764 464 SRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGT 501 (554)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (554)
+-.....|-+..|+-.+---+-|-...|.-+-.+.+|+
T Consensus 740 sE~Svvrpmdvdeqgtpigldefgsnkd~fp~gl~~~~ 777 (790)
T PF07794_consen 740 SEISVVRPMDVDEQGTPIGLDEFGSNKDAFPRGLAEGS 777 (790)
T ss_pred hhhcceecccccccCCccchhhcccccccCCcccccCC
No 460
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.76 E-value=5e+02 Score=27.79 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 282 EEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNL 343 (554)
Q Consensus 282 e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~ 343 (554)
...+..+..++..++.++.++...+++.. +...++..+..++..+++++.+++.-+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 461
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=21.58 E-value=5.9e+02 Score=22.74 Aligned_cols=99 Identities=21% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008764 288 MDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTA 367 (554)
Q Consensus 288 l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~ 367 (554)
+..++..|-..|.+++..+.....++.....-.+.+..++..|..+-..++.-+..-+..+..+.-.....+.+......
T Consensus 4 LeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~ 83 (134)
T PF15233_consen 4 LEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQT 83 (134)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred H------HHHHHHHHHHHHHHHHHH
Q 008764 368 K------INSLEEEVEMERALSMQI 386 (554)
Q Consensus 368 ~------i~~Le~el~~~~~~~~e~ 386 (554)
. --..+..+++....+.++
T Consensus 84 ~~~eck~R~~fe~qLE~lm~qHKdL 108 (134)
T PF15233_consen 84 LLQECKLRLDFEEQLEDLMGQHKDL 108 (134)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHH
No 462
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=21.56 E-value=7e+02 Score=23.67 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 313 LAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEVEMERALSMQITVKCQK 392 (554)
Q Consensus 313 l~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el~~~~~~~~e~e~kl~e 392 (554)
+.....-+..++.++....+....+...++.....+...+.+-..+..++..+...+..++.++.+.+..--..-.....
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~ 155 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVH 155 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q ss_pred HHHHHHH
Q 008764 393 LEEEQWR 399 (554)
Q Consensus 393 Le~el~~ 399 (554)
++.....
T Consensus 156 ~~K~~~e 162 (203)
T KOG3433|consen 156 LEKTMAE 162 (203)
T ss_pred HHHHHHH
No 463
>PRK14011 prefoldin subunit alpha; Provisional
Probab=21.24 E-value=6.3e+02 Score=22.95 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 008764 227 AELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEKAELE-------------------------------------- 268 (554)
Q Consensus 227 ~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~~~l~-------------------------------------- 268 (554)
.+++.+...++.+.++++.+...+..+.....++..-+..++
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 269 -----EKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAK 315 (554)
Q Consensus 269 -----~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~ 315 (554)
..+.-+...++.++.....+...+.++...+..+...+..--..+..
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~ 134 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQ 134 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=21.17 E-value=36 Score=27.32 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=0.0
Q ss_pred ccccccccccccc
Q 008764 538 GFAKFFSRTKNGI 550 (554)
Q Consensus 538 ~~~~~~~~~~~~~ 550 (554)
|.+.||+||++++
T Consensus 17 g~~~y~SRSR~~l 29 (75)
T PF01502_consen 17 GRATYYSRSRNRL 29 (75)
T ss_dssp SB-EEEETTTTEE
T ss_pred CcEEEEEccCCcE
No 465
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=21.17 E-value=7.2e+02 Score=23.61 Aligned_cols=90 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 241 QKLERMDAEKVDLEEKLDKMDAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSV 320 (554)
Q Consensus 241 ~~l~~le~ei~eLe~~l~~l~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el 320 (554)
..+......+.+|+..++.....+-.+...++.........++.-..+..++..+.+.++.+..++..++..--..-..+
T Consensus 74 ~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~ 153 (203)
T KOG3433|consen 74 EAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKK 153 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q ss_pred HHHHHHHHHH
Q 008764 321 EASELQLREA 330 (554)
Q Consensus 321 ~~~e~~i~el 330 (554)
......+.+.
T Consensus 154 ~~~~K~~~ea 163 (203)
T KOG3433|consen 154 VHLEKTMAEA 163 (203)
T ss_pred HHHHHHHHHH
No 466
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=21.15 E-value=9.2e+02 Score=24.84 Aligned_cols=201 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 008764 327 LREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEEEV----------EMERALSMQITVKCQKLEEE 396 (554)
Q Consensus 327 i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~el----------~~~~~~~~e~e~kl~eLe~e 396 (554)
+..+..+-.+|..+|+-++++...++..-...-.+++.|..-+..|+.-+ .+.+....++......|+.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH----------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----chhhhhcc
Q 008764 397 QWRMKQEVE----------------LQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLKSLA----TLEDFLID 456 (554)
Q Consensus 397 l~~~~~e~~----------------~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~~L~----~~~~~~~~ 456 (554)
|.+.+-... ...+.....+...+|-++..+..+|+-...+-..--.--..+. ++++=+-.
T Consensus 82 LARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 82 LARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q ss_pred cCCccccccCcccccCCcCCccccCCCCccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 008764 457 TASIPEFSRAALPIPKTVGESWKLPSNVTFSHKRDLNSPGVVAGTTCPSISKNDGNTPPSSSSSTSSAMPSNQINPEKNR 536 (554)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (554)
+.+..-........+.+|.. ..-++.-....+..+.|....-..|+|-+-.|.+..+..+ -|+.
T Consensus 162 ~~s~~~~~~~~~~s~~~gps--------------~r~~lgg~~~~~~~~sng~~~kr~~~sq~r~s~~~~~~~~--lk~~ 225 (351)
T PF07058_consen 162 SSSNSSRPTSEGKSPSNGPS--------------RRQSLGGAENFSKLSSNGGLSKRRPSSQPRSSLSGSSSPV--LKHA 225 (351)
T ss_pred CCCCCCCCCcCCCCCCCCCc--------------cCcCCCCccccccccCCCccccCCCcccccccccccchhh--hccc
Q ss_pred ccccccc
Q 008764 537 NGFAKFF 543 (554)
Q Consensus 537 ~~~~~~~ 543 (554)
+|=.+-|
T Consensus 226 ~~~s~sf 232 (351)
T PF07058_consen 226 KGTSKSF 232 (351)
T ss_pred ccCcccc
No 467
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=20.92 E-value=7.5e+02 Score=23.77 Aligned_cols=183 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred ccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 008764 214 VTTQSTLAESSLRAELEAMIHRTAELEQKLERMDAEKVDLEEKLDKMDAEK--------AELEEKLEQMDAEKAELEEKL 285 (554)
Q Consensus 214 ~tGG~~~~~~~l~~ei~~l~~el~eLe~~l~~le~ei~eLe~~l~~l~~e~--------~~l~~~ie~l~~el~~~e~el 285 (554)
+-+|| ........+-..-+.....+..+......+..++...+.+...+ ..+......+-..+...+..+
T Consensus 7 lLagC--~~~~~~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l 84 (204)
T PF10368_consen 7 LLAGC--TGKKPEEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKEL 84 (204)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008764 286 EKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTM 365 (554)
Q Consensus 286 ~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l 365 (554)
.....-+.....++..+...+..+... .+..++..+...+...-.....+-.....+-..-..+=..|..-......+
T Consensus 85 ~~Ek~ai~~a~~e~~~~~~~i~ki~d~--~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l 162 (204)
T PF10368_consen 85 KKEKEAIEKAKEEFKKAKKYIDKIEDE--KLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQL 162 (204)
T ss_dssp HHHHHHHHHHHHHHTT----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 366 TAKINSLEEEVEMERALSMQITVKCQKLEEEQWRM 400 (554)
Q Consensus 366 ~~~i~~Le~el~~~~~~~~e~e~kl~eLe~el~~~ 400 (554)
..++..+..-..........+.....+....-..+
T Consensus 163 ~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~~ 197 (204)
T PF10368_consen 163 DEKIKAINQSYKEVNKQKEKFNEYTKKYNEEKQDF 197 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=20.76 E-value=6.8e+02 Score=23.17 Aligned_cols=128 Identities=13% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 008764 313 LAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSMEMEAQTMTAKINSLEE--------EVEMERALSM 384 (554)
Q Consensus 313 l~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~le~ei~~l~~~i~~Le~--------el~~~~~~~~ 384 (554)
...+..-+.-.......++..+..++..+..+...+.............+......|+.+-. ++-..+.-..
T Consensus 3 ~~a~~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~ 82 (158)
T PF09486_consen 3 ASAWRTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRD 82 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 385 QITVKCQKLEEEQWRMKQEVELQQIAKSNAEVKIKQEDLEVAAGKLAECQKTIQSLGKQLK 445 (554)
Q Consensus 385 e~e~kl~eLe~el~~~~~e~~~~~~~~~~~~lk~~qeel~~a~~kl~e~q~tI~~L~~ql~ 445 (554)
.+..++..++.++..+.. .+......+......|......++-|.+.|..|.....
T Consensus 83 ~l~~~~~~~e~~~a~l~~-----~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~e 138 (158)
T PF09486_consen 83 VLEERVRAAEAELAALRQ-----ALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
No 469
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=20.71 E-value=73 Score=27.87 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q 008764 279 AELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESK-----RIVES 353 (554)
Q Consensus 279 ~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~-----~~le~ 353 (554)
.+...-+..+...+..+..++..+..++..+...+..+......+...+.......+.+...-..--..+ .....
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~ 100 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEAEE 100 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 354 NVSSMEMEAQTMTAKINSLEEEVEMERALS 383 (554)
Q Consensus 354 ~L~~le~ei~~l~~~i~~Le~el~~~~~~~ 383 (554)
-+.....++..+...+..|.......+...
T Consensus 101 i~~~A~~~~~~l~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 101 IIEEARAEAERLREEIEELKRQAEQFRAQF 130 (131)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 470
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=20.66 E-value=9.6e+02 Score=24.89 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008764 280 ELEEKLEKMDA-EKAKLEEKIEKMEAEKAELEMALAKSQDSVEASELQLREATMQLEELQRELNLVNESKRIVESNVSSM 358 (554)
Q Consensus 280 ~~e~el~~l~~-kl~~Le~ele~le~eleele~el~~l~~el~~~e~~i~ele~ele~l~~el~~l~~~~~~le~~L~~l 358 (554)
+.+.-+..+.+ ++..++.++++.----..|..+...+--++..++..+.+++..|..-..+.....+++.....-+..+
T Consensus 108 D~EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~L 187 (405)
T KOG2010|consen 108 DPEASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVL 187 (405)
T ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008764 359 EMEAQTMTAKINSLEEEVEM 378 (554)
Q Consensus 359 e~ei~~l~~~i~~Le~el~~ 378 (554)
+.....++..|.+-..-|++
T Consensus 188 q~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 188 QHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 471
>PHA03011 hypothetical protein; Provisional
Probab=20.40 E-value=5.3e+02 Score=21.83 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 262 AEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEKAELEMALAKSQDSVE 321 (554)
Q Consensus 262 ~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~eleele~el~~l~~el~ 321 (554)
.+++.+...++++..+...+-.+..-+...++.++.-+++-..++--+..++.+++..+.
T Consensus 57 GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 57 GDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
No 472
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.34 E-value=4.6e+02 Score=21.08 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008764 299 IEKMEAEKAELEMALAKSQDSVEASELQLRE---ATMQLEELQRELNLVNESKRIVESNV 355 (554)
Q Consensus 299 le~le~eleele~el~~l~~el~~~e~~i~e---le~ele~l~~el~~l~~~~~~le~~L 355 (554)
+..+...+..+..++..++..+..++..+.. +..+++.+...+..++........-|
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 473
>PRK11020 hypothetical protein; Provisional
Probab=20.15 E-value=5.8e+02 Score=22.18 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 224 SLRAELEAMIHRTAELEQKLERM-----DAEKVDLEEKLDKMDAEKAELEEK 270 (554)
Q Consensus 224 ~l~~ei~~l~~el~eLe~~l~~l-----e~ei~eLe~~l~~l~~e~~~l~~~ 270 (554)
.++.+|+.|..++..+..++..+ ..-+..+..++..+..++..+...
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.08 E-value=7.3e+02 Score=23.31 Aligned_cols=112 Identities=15% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 229 LEAMIHRTAELEQKLERMDAEKVDLEEKLDKM--DAEKAELEEKLEQMDAEKAELEEKLEKMDAEKAKLEEKIEKMEAEK 306 (554)
Q Consensus 229 i~~l~~el~eLe~~l~~le~ei~eLe~~l~~l--~~e~~~l~~~ie~l~~el~~~e~el~~l~~kl~~Le~ele~le~el 306 (554)
+..+.-.+-.+-..+-.........-..+..+ ......+...+..+...+...+.....+...+......+ ..+.
T Consensus 68 ~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l---~~D~ 144 (184)
T PF05791_consen 68 LDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKL---QKDS 144 (184)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008764 307 AELEMALAKSQDSVEASELQLREATMQLEELQRELNL 343 (554)
Q Consensus 307 eele~el~~l~~el~~~e~~i~ele~ele~l~~el~~ 343 (554)
..+......+...+......|..++.++..++..+..
T Consensus 145 ~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 145 RNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Done!