Query 008766
Match_columns 554
No_of_seqs 168 out of 438
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 16:18:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.1 8.5E-11 1.8E-15 88.8 3.3 47 437-487 1-48 (48)
2 PLN03212 Transcription repress 99.0 7.4E-10 1.6E-14 110.7 7.1 73 421-497 9-82 (249)
3 smart00717 SANT SANT SWI3, AD 98.8 7.5E-09 1.6E-13 74.4 5.0 48 437-488 1-48 (49)
4 PF13921 Myb_DNA-bind_6: Myb-l 98.8 7.1E-09 1.5E-13 80.7 4.9 53 440-497 1-53 (60)
5 PLN03091 hypothetical protein; 98.8 6.5E-09 1.4E-13 110.8 5.7 64 432-498 9-72 (459)
6 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 2.9E-08 6.4E-13 70.5 4.7 45 439-487 1-45 (45)
7 KOG0048 Transcription factor, 98.6 3.5E-08 7.5E-13 96.8 5.9 57 437-497 9-66 (238)
8 PLN03212 Transcription repress 98.1 2.7E-06 5.9E-11 85.5 4.7 53 435-492 76-128 (249)
9 PLN03091 hypothetical protein; 98.0 6.5E-06 1.4E-10 88.4 5.0 50 436-490 66-115 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.4 0.00034 7.4E-09 56.3 5.7 47 435-484 1-51 (57)
11 KOG0457 Histone acetyltransfer 97.4 0.00025 5.4E-09 76.2 5.6 68 438-517 73-141 (438)
12 KOG0048 Transcription factor, 97.3 0.0002 4.4E-09 70.6 4.5 54 434-492 59-112 (238)
13 KOG0049 Transcription factor, 97.3 0.00018 3.9E-09 80.5 4.5 60 434-497 357-416 (939)
14 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00052 1.1E-08 56.6 3.2 53 437-489 1-66 (90)
15 KOG0051 RNA polymerase I termi 96.8 0.00078 1.7E-08 75.1 3.6 76 436-528 383-462 (607)
16 KOG0049 Transcription factor, 96.5 0.0014 3E-08 73.7 2.3 52 433-488 408-459 (939)
17 PF13873 Myb_DNA-bind_5: Myb/S 95.9 0.0087 1.9E-07 48.9 3.6 53 437-489 2-71 (78)
18 COG5114 Histone acetyltransfer 95.3 0.025 5.4E-07 59.8 5.1 70 439-520 65-136 (432)
19 PF13325 MCRS_N: N-terminal re 94.3 0.036 7.8E-07 54.9 3.2 59 435-493 71-132 (199)
20 KOG1279 Chromatin remodeling f 93.7 0.07 1.5E-06 59.1 4.5 49 435-488 251-299 (506)
21 PF09111 SLIDE: SLIDE; InterP 93.6 0.1 2.2E-06 47.7 4.6 54 436-489 48-112 (118)
22 COG5147 REB1 Myb superfamily p 93.3 0.083 1.8E-06 58.6 4.1 60 434-497 17-76 (512)
23 KOG0050 mRNA splicing protein 93.1 0.041 9E-07 61.0 1.4 58 437-498 7-64 (617)
24 COG5259 RSC8 RSC chromatin rem 92.1 0.13 2.7E-06 56.7 3.5 47 436-487 278-324 (531)
25 COG5147 REB1 Myb superfamily p 91.1 0.12 2.6E-06 57.4 2.1 49 436-490 290-338 (512)
26 KOG4282 Transcription factor G 90.7 0.45 9.7E-06 49.2 5.7 81 437-524 54-143 (345)
27 PLN03142 Probable chromatin-re 88.2 0.57 1.2E-05 56.0 4.8 53 437-489 926-986 (1033)
28 PF11149 DUF2924: Protein of u 84.5 0.86 1.9E-05 43.0 3.0 39 144-182 7-45 (136)
29 KOG0051 RNA polymerase I termi 84.4 1 2.2E-05 51.2 4.0 59 435-497 434-518 (607)
30 PF08914 Myb_DNA-bind_2: Rap1 84.1 1.5 3.3E-05 36.4 4.0 50 437-489 2-59 (65)
31 PF12776 Myb_DNA-bind_3: Myb/S 76.5 4.3 9.3E-05 33.9 4.3 50 439-488 1-63 (96)
32 KOG2656 DNA methyltransferase 76.2 2.1 4.6E-05 46.7 3.0 54 438-492 131-190 (445)
33 PF08074 CHDCT2: CHDCT2 (NUC03 71.9 2.5 5.3E-05 41.5 2.0 47 437-483 3-58 (173)
34 COG5118 BDP1 Transcription ini 68.0 6.9 0.00015 42.9 4.5 52 433-489 361-412 (507)
35 PF04504 DUF573: Protein of un 60.3 18 0.00038 32.1 4.9 54 436-489 3-64 (98)
36 KOG0384 Chromodomain-helicase 60.1 4.5 9.7E-05 49.5 1.5 53 436-488 1132-1192(1373)
37 KOG0050 mRNA splicing protein 44.3 17 0.00038 41.2 2.8 49 436-490 58-106 (617)
38 PF09420 Nop16: Ribosome bioge 40.4 53 0.0011 31.2 5.0 52 435-487 112-163 (164)
39 PF13921 Myb_DNA-bind_6: Myb-l 31.8 40 0.00087 26.1 2.3 15 434-448 46-60 (60)
40 PRK13923 putative spore coat p 31.5 26 0.00056 34.5 1.4 54 436-489 4-58 (170)
41 KOG4468 Polycomb-group transcr 25.3 1.6E+02 0.0034 34.7 6.3 27 436-463 87-113 (782)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.07 E-value=8.5e-11 Score=88.78 Aligned_cols=47 Identities=36% Similarity=0.653 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC-CCChhhHHHHHHHhh
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLL 487 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~-~RT~VDLKDKWRNLl 487 (554)
|++||+||++.|+++|.+||.++|..|+.. ++ +||..+|+++|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR----MPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH----HSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH----cCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999889999843 44 999999999999975
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.99 E-value=7.4e-10 Score=110.65 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=60.0
Q ss_pred CCcccccCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccC-CCCChhhHHHHHHHhhccccCCCCCC
Q 008766 421 NPATVRAVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 421 ~~~~~p~~k~gkrRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f-~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
++.+.-++.--|.--++++||+||++.|++.|++||.++|..|+.. + .+||+.||++||.|.+++.+.+++|-
T Consensus 9 ~~~~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~----~g~gRT~KQCReRW~N~L~P~I~kgpWT 82 (249)
T PLN03212 9 PVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKR----AGLLRCGKSCRLRWMNYLRPSVKRGGIT 82 (249)
T ss_pred CCCCCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHh----hhcCCCcchHHHHHHHhhchhcccCCCC
Confidence 3333333333455566889999999999999999999999999742 3 58999999999999999999999995
No 3
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.80 E-value=7.5e-09 Score=74.37 Aligned_cols=48 Identities=38% Similarity=0.694 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
+.+||++|++.|+.+|++||.++|..|.. .+++||..+|+++|+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~----~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAK----ELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HcCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999779999974 3569999999999999875
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.79 E-value=7.1e-09 Score=80.72 Aligned_cols=53 Identities=34% Similarity=0.648 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 440 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 440 WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
||+||++.|+.+|++||. +|+.|.. .|++||..+|++||++.+++....+||.
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~----~l~~Rt~~~~~~r~~~~l~~~~~~~~wt 53 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAE----HLGNRTPKQCRNRWRNHLRPKISRGPWT 53 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHH----HSTTS-HHHHHHHHHHTTSTTSTSSSSS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHH----HHCcCCHHHHHHHHHHHCcccccCCCcC
Confidence 999999999999999996 9999974 3567999999999999777777767775
No 5
>PLN03091 hypothetical protein; Provisional
Probab=98.78 E-value=6.5e-09 Score=110.75 Aligned_cols=64 Identities=23% Similarity=0.451 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCc
Q 008766 432 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 498 (554)
Q Consensus 432 krRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~ 498 (554)
|++.++++||+|||+.|++.|++||.++|..|.+. .-.+||+.||++||.|.+.+.+.++||-+
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~---~g~gRT~KQCRERW~NyLdP~IkKgpWT~ 72 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQ---AGLQRCGKSCRLRWINYLRPDLKRGTFSQ 72 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhh---hccCcCcchHhHHHHhccCCcccCCCCCH
Confidence 45566789999999999999999999999999742 12589999999999999999999999963
No 6
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.67 E-value=2.9e-08 Score=70.50 Aligned_cols=45 Identities=40% Similarity=0.777 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 008766 439 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 487 (554)
Q Consensus 439 ~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 487 (554)
+||.+|++.|+.++++||.++|..|.. .+++||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~----~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAK----ELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHh----HcCCCCHHHHHHHHHHhC
Confidence 599999999999999999889999984 356799999999999874
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.64 E-value=3.5e-08 Score=96.80 Aligned_cols=57 Identities=18% Similarity=0.386 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC-CCChhhHHHHHHHhhccccCCCCCC
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~-~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
+++||+|||+.|++.|++||.|+|..|.+. +. +|++.+|+-||.|.+++.+.+++|-
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~----~gl~R~GKSCRlRW~NyLrP~ikrg~fT 66 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKL----AGLRRCGKSCRLRWTNYLRPDLKRGNFS 66 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhh----cCCCccchHHHHHhhcccCCCccCCCCC
Confidence 699999999999999999999999999853 33 9999999999999999999988774
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.11 E-value=2.7e-06 Score=85.55 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 492 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 492 (554)
-.+.+||.||++.|++.+.+||. +|+.|. ..|++||..+||.||.++++....
T Consensus 76 I~kgpWT~EED~lLlel~~~~Gn-KWs~IA----k~LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGN-RWSLIA----GRIPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccc-cHHHHH----hhcCCCCHHHHHHHHHHHHhHHHH
Confidence 44679999999999999999997 999997 347899999999999998886544
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.98 E-value=6.5e-06 Score=88.38 Aligned_cols=50 Identities=28% Similarity=0.476 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
++++||.||++.|++.+++||. +|+.|. ..|++||..+||.||..+++..
T Consensus 66 kKgpWT~EED~lLLeL~k~~Gn-KWskIA----k~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGN-RWSQIA----AQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc-chHHHH----HhcCCCCHHHHHHHHHHHHHHH
Confidence 3679999999999999999998 999998 3478999999999999988754
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.42 E-value=0.00034 Score=56.31 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCc---hhhhhhhcccCCCC-ChhhHHHHHH
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRW---SEIKRLAFASYSYR-TSVDLKDKWR 484 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkW---k~Il~~~f~~f~~R-T~VDLKDKWR 484 (554)
|+|..||+||.+.+++||+.||.|+| +.|+... ...| |..+++....
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~---~~~~lT~~qV~SH~Q 51 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM---VVDGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc---CCCCCCHHHHHHHHH
Confidence 46889999999999999999999999 9997421 1245 9999886644
No 11
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.36 E-value=0.00025 Score=76.21 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc-ccCCCCCCcccccccCCCCCCCChHHH
Q 008766 438 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA-SLAQTPPDSRMGARKHASSVPIPMPVL 516 (554)
Q Consensus 438 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~-s~~q~p~~~g~~~Rk~~~~~piP~~iL 516 (554)
--||.+||-.|++|++.||.|||.+|++. ...||.-+||+.|.++.-. .+.+-||-. -.+++|+..+
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~h----IGtKtkeeck~hy~k~fv~s~~~~~~~i~--------~~~~~~q~e~ 140 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIADH----IGTKTKEECKEHYLKHFVNSPIFPLPDIS--------LGIGVNQDED 140 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHHH----HcccchHHHHHHHHHHHhcCccccccccc--------cccCcchHHH
Confidence 45999999999999999999999999843 4589999999999988763 444444431 2455666554
Q ss_pred H
Q 008766 517 L 517 (554)
Q Consensus 517 ~ 517 (554)
+
T Consensus 141 ~ 141 (438)
T KOG0457|consen 141 A 141 (438)
T ss_pred h
Confidence 4
No 12
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.35 E-value=0.0002 Score=70.55 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=47.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 492 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 492 (554)
.-+++.||+|||+.|+++-.+||. +|+.|+ ..|++||.-++|.-|...+|..+.
T Consensus 59 ~ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA----~~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 59 DLKRGNFSDEEEDLIIKLHALLGN-RWSLIA----GRLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-HHHHHH----hhCCCcCHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999999 899997 458999999999999888775444
No 13
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.34 E-value=0.00018 Score=80.48 Aligned_cols=60 Identities=27% Similarity=0.478 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
.-++.+||++||..|+.+|++||...|.+|. ..|++|+..||++||.|.+..+...+-|.
T Consensus 357 sikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R----~~vPnRSdsQcR~RY~nvL~~s~K~~rW~ 416 (939)
T KOG0049|consen 357 SVKHGRWTDQEDVLLVCAVSRYGAKDWAKVR----QAVPNRSDSQCRERYTNVLNRSAKVERWT 416 (939)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCccchhhHH----HhcCCccHHHHHHHHHHHHHHhhccCcee
Confidence 3458899999999999999999999999997 45789999999999999999887777775
No 14
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.04 E-value=0.00052 Score=56.60 Aligned_cols=53 Identities=30% Similarity=0.460 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHh------hCC-----C--CchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 437 HRAWTLSEVMKLVEGVSK------YGA-----G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeK------yG~-----G--kWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
|..||.+|+..|++.+.. |+. + .|..|...-...=-.||+.+|++||.||.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~ 66 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK 66 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999887 321 1 5999986321111279999999999999984
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.85 E-value=0.00078 Score=75.10 Aligned_cols=76 Identities=26% Similarity=0.392 Sum_probs=58.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccc--CCCCCCcccccccCCCCCCCCh
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL--AQTPPDSRMGARKHASSVPIPM 513 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~--~q~p~~~g~~~Rk~~~~~piP~ 513 (554)
.++.||+||++.|...|..+|. .|+.|.+ .-+|.+.+|+|+||+.++.+- ..++|-. .--.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~-----~lgr~P~~crd~wr~~~~~g~~~~r~~Ws~-----------eEe~ 445 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGK-----ALGRMPMDCRDRWRQYVKCGSKRNRGAWSI-----------EEEE 445 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHH-----HHccCcHHHHHHHHHhhccccccccCcchH-----------HHHH
Confidence 5788999999999999999998 9999964 358999999999999999875 4456632 1133
Q ss_pred HHHHHHHHHH--hhcCC
Q 008766 514 PVLLRVRELA--EMQSQ 528 (554)
Q Consensus 514 ~iL~RVreLA--~~q~~ 528 (554)
-+|.-|-++- .+|||
T Consensus 446 ~Llk~V~~~~~~~~q~q 462 (607)
T KOG0051|consen 446 KLLKTVNEMIREALQPQ 462 (607)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 4555555543 36776
No 16
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.48 E-value=0.0014 Score=73.70 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=43.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 433 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 433 rRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
++-+...||..|++.|+..|++||.|+|.+|+ ..+++||..|+..+-+.++.
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA----~~Lp~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCA----MLLPKKTSRQLRRRRLRLIA 459 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHH----HHccccchhHHHHHHHHHHH
Confidence 35567889999999999999999999999997 44789999888777655554
No 17
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.89 E-value=0.0087 Score=48.93 Aligned_cols=53 Identities=32% Similarity=0.341 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhh-----CC-----------CCchhhhhhhcccC-CCCChhhHHHHHHHhhcc
Q 008766 437 HRAWTLSEVMKLVEGVSKY-----GA-----------GRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKy-----G~-----------GkWk~Il~~~f~~f-~~RT~VDLKDKWRNLlK~ 489 (554)
...||.+|.+.|++.|++| |. ..|..|........ ..||..+|+.+|.||...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999998 31 36999986433322 489999999999999764
No 18
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.26 E-value=0.025 Score=59.78 Aligned_cols=70 Identities=20% Similarity=0.446 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc-ccCCCCCCcccccccCCCCCCCChH-HH
Q 008766 439 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA-SLAQTPPDSRMGARKHASSVPIPMP-VL 516 (554)
Q Consensus 439 ~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~-s~~q~p~~~g~~~Rk~~~~~piP~~-iL 516 (554)
.|+..|+-.|+++.+..|.|+|.+|++. ...|+..++|+.|-.+.-. ..++-|.. . -..++|++ +|
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIady----iGsr~kee~k~HylK~y~es~~ypl~~i------~--~~~~v~q~~f~ 132 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADY----IGSRAKEEIKSHYLKMYDESKYYPLPDI------T--QNIHVPQDEFL 132 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHH----HhhhhhHHHHHHHHHHHhhccccccccc------c--cCCCCchHHHH
Confidence 5999999999999999999999999842 4589999999999887763 33433321 1 24567774 44
Q ss_pred HHHH
Q 008766 517 LRVR 520 (554)
Q Consensus 517 ~RVr 520 (554)
.+-|
T Consensus 133 ~qrr 136 (432)
T COG5114 133 EQRR 136 (432)
T ss_pred HHHH
Confidence 4433
No 19
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=94.26 E-value=0.036 Score=54.86 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC--CCCchhhhhhhcccC-CCCChhhHHHHHHHhhccccCC
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKASLAQ 493 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG--~GkWk~Il~~~f~~f-~~RT~VDLKDKWRNLlK~s~~q 493 (554)
..+-+||.+|++.|........ ...+.+|+..+...| ..||+.+|.+.|+.|.++...+
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence 3578999999999999877764 468999998777777 6799999999999988877664
No 20
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=93.75 E-value=0.07 Score=59.09 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
..+..||.+|.-.|++||++||. .|.+|. .....||.-||-.|+..|=-
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa----~hVg~ks~eqCI~kFL~LPi 299 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVA----DHVGTKSQEQCILKFLRLPI 299 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHH----hccCCCCHHHHHHHHHhcCc
Confidence 45678999999999999999999 999997 34569999999999987643
No 21
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=93.61 E-value=0.1 Score=47.72 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CCchhhhhh----h---ccc-CCCCChhhHHHHHHHhhcc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL----A---FAS-YSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~---GkWk~Il~~----~---f~~-f~~RT~VDLKDKWRNLlK~ 489 (554)
..+.||.+||..|+-.+.+||. |.|..|+.. . |+- |..||+.+|..|-..|++.
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999 999999863 1 221 3699999999999998874
No 22
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=93.26 E-value=0.083 Score=58.61 Aligned_cols=60 Identities=22% Similarity=0.399 Sum_probs=51.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
.++...|+..||+.|..+|++||.-+|+.|. ..|..||+.|++-+|-|.+.+.+.+..|.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~va----s~~~~~~~kq~~~rw~~~lnp~lk~~~~~ 76 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVA----SLLISSTGKQSSNRWNNHLNPQLKKKNWS 76 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHH----HHhcccccccccchhhhhhchhccccccc
Confidence 4456799999999999999999999999997 44667999999999988888877766664
No 23
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.09 E-value=0.041 Score=60.99 Aligned_cols=58 Identities=26% Similarity=0.465 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCc
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 498 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~ 498 (554)
-.-|+--|++.|..+|.+||...|+.|. ..++..|..+|+-+|--.+.+++....|.+
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~----sll~~kt~rqC~~rw~e~ldp~i~~tews~ 64 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIA----SLLNRKTARQCKARWEEWLDPAIKKTEWSR 64 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHH----HHHhhcchhHHHHHHHHHhCHHHhhhhhhh
Confidence 4579999999999999999999999997 346789999999999999999999888864
No 24
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=92.14 E-value=0.13 Score=56.75 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 487 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 487 (554)
...+||.+|.-.|++||+.||. .|.+|+. ...++|--||--|+-+|=
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~----HVgtKt~EqCIl~FL~LP 324 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVAR----HVGTKTKEQCILHFLQLP 324 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHH----HhCCCCHHHHHHHHHcCC
Confidence 4568999999999999999999 9999983 467999999999987763
No 25
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=91.11 E-value=0.12 Score=57.41 Aligned_cols=49 Identities=31% Similarity=0.597 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
.+..||.+|+..|..-+.++|. .|+.|.. ..+|-+.+|.|+||+.++.+
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~-----~~~rmp~~crd~wr~~~~~g 338 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGK-----LLGRMPNDCRDRWRDYVKCG 338 (512)
T ss_pred hhccCccccccccccccccccc-hhhHhhh-----hhccCcHHHHHHHhhhcccc
Confidence 3668999999999999999998 9999964 34899999999999999986
No 26
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=90.69 E-value=0.45 Score=49.20 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHHHHHhh----CCCC-----chhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCcccccccCCC
Q 008766 437 HRAWTLSEVMKLVEGVSKY----GAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHAS 507 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKy----G~Gk-----Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~ 507 (554)
...|+.+|+..||+...+. ..|+ |..|.......=-.||+.+||.||.||.+..-. ... ++..+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~--~k~-----~~~~~ 126 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK--EKA-----KKEGS 126 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH--Hhc-----ccCCC
Confidence 6899999999999887643 4455 999986222222479999999999999985321 101 11001
Q ss_pred CCCCChHHHHHHHHHHh
Q 008766 508 SVPIPMPVLLRVRELAE 524 (554)
Q Consensus 508 ~~piP~~iL~RVreLA~ 524 (554)
...-+..+..++-.|.-
T Consensus 127 ~~~s~~~ff~~le~~~~ 143 (345)
T KOG4282|consen 127 GEGSSWKFFSELEALLI 143 (345)
T ss_pred CCCccchHHHHHHHHHh
Confidence 23456677777666664
No 27
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=88.20 E-value=0.57 Score=56.02 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhh-------hcc-cCCCCChhhHHHHHHHhhcc
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRL-------AFA-SYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~-------~f~-~f~~RT~VDLKDKWRNLlK~ 489 (554)
.+.||.|||..|+-.+.+||.|+|..|+.. .|+ .|..||+..|+.|-..|++.
T Consensus 926 ~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~ 986 (1033)
T PLN03142 926 GKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRL 986 (1033)
T ss_pred CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHH
Confidence 557999999999999999999999999752 122 24799999999999888874
No 28
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=84.49 E-value=0.86 Score=43.04 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=36.7
Q ss_pred eccCcCHHHHHHHHhhhcCCccccchhHHHHHHhhhccc
Q 008766 144 CLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLT 182 (554)
Q Consensus 144 ~LDnLsIreL~E~FraTFGReTtVKDK~WLKRrI~mGL~ 182 (554)
-|..|++.||.+.++..||.++---.++||.+||+.-++
T Consensus 7 ~L~~l~~~eL~~~W~~~fg~~pp~~~r~~L~~rlAyriQ 45 (136)
T PF11149_consen 7 ALPDLPMPELRARWRRLFGSPPPHHNRDFLERRLAYRIQ 45 (136)
T ss_pred hcccCCHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999998775
No 29
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=84.39 E-value=1 Score=51.23 Aligned_cols=59 Identities=20% Similarity=0.443 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHH-------hh------------------CCCCchhhhhhhcccCCCCChhhHHHHHHHhhc-
Q 008766 435 KHHRAWTLSEVMKLVEGVS-------KY------------------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK- 488 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVe-------Ky------------------G~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK- 488 (554)
+.+.+||.||++.|++.|+ .| -.-+|..|.. .+..|+.++|+-||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse----~~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE----MLGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH----hhcCCCcchHHHHHHHHHhh
Confidence 5689999999999999996 44 1238999974 4679999999999999988
Q ss_pred cccCCCCCC
Q 008766 489 ASLAQTPPD 497 (554)
Q Consensus 489 ~s~~q~p~~ 497 (554)
+.+.+.++.
T Consensus 510 ~s~n~~~~~ 518 (607)
T KOG0051|consen 510 PSFNKRQES 518 (607)
T ss_pred HHhhccccc
Confidence 555555554
No 30
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=84.05 E-value=1.5 Score=36.40 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCC------C--CchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 437 HRAWTLSEVMKLVEGVSKYGA------G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~------G--kWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
|.++|.+||.+|++-|..+.. | -|+.+... ....+|--.++|+|+.-++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~---~~t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEK---HPTRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS----SSS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhc
Confidence 678999999999999966532 2 26655422 22489999999999776654
No 31
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=76.46 E-value=4.3 Score=33.92 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHhh-------CCCC-----chhhhhhhcccC-CCCChhhHHHHHHHhhc
Q 008766 439 AWTLSEVMKLVEGVSKY-------GAGR-----WSEIKRLAFASY-SYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 439 ~WT~EEveaLv~GVeKy-------G~Gk-----Wk~Il~~~f~~f-~~RT~VDLKDKWRNLlK 488 (554)
.||+++++.|++.+... +.|. |..|.......+ ..-|..+|+.||..|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999998654 2333 666664322223 45688999999888776
No 32
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=76.25 E-value=2.1 Score=46.71 Aligned_cols=54 Identities=30% Similarity=0.437 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhc-ccC-CCCChhhHHHHH----HHhhccccC
Q 008766 438 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASY-SYRTSVDLKDKW----RNLLKASLA 492 (554)
Q Consensus 438 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f-~~f-~~RT~VDLKDKW----RNLlK~s~~ 492 (554)
..||.+|.+.|.+..++|-. +|-.|.+.+- ..| .+||--|||||| |+|+++.-.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~ 190 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP 190 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC
Confidence 67999999999999999999 9999986432 235 469999999998 555555433
No 33
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.93 E-value=2.5 Score=41.50 Aligned_cols=47 Identities=30% Similarity=0.645 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhh-cccCC--CCCh------hhHHHHH
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLA-FASYS--YRTS------VDLKDKW 483 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~-f~~f~--~RT~------VDLKDKW 483 (554)
..-|-..-|=.|+.||-+||-|+|.+|.++. |.+++ -++. -++|.|+
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHH
Confidence 4568888889999999999999999999753 33332 2333 4888876
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=68.00 E-value=6.9 Score=42.90 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=45.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 433 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 433 rRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
+++..-+||.+|.+.+.+++..+|. .+..|. ..|++|...|+|-||.+--|.
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs----~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLIS----SLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHH----HhcCchhHHHHHHHHHHHhhh
Confidence 3566789999999999999999999 899997 347899999999999876653
No 35
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=60.29 E-value=18 Score=32.09 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHhh----CCCCchhhhhhh---cccC-CCCChhhHHHHHHHhhcc
Q 008766 436 HHRAWTLSEVMKLVEGVSKY----GAGRWSEIKRLA---FASY-SYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKy----G~GkWk~Il~~~---f~~f-~~RT~VDLKDKWRNLlK~ 489 (554)
-.|-||+++|-.|++|+-.| |.....++...+ ...+ .+=+..||.||-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 35779999999999999888 765444443211 1122 234778999999999884
No 36
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=60.12 E-value=4.5 Score=49.54 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC--------CCChhhHHHHHHHhhc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS--------YRTSVDLKDKWRNLLK 488 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~--------~RT~VDLKDKWRNLlK 488 (554)
.---|..+++..|+-||-+||-|+|..|+.+..--|. .=++++|.-|=.-|++
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls 1192 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLS 1192 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHH
Confidence 4567999999999999999999999999976543232 2345666666555444
No 37
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=44.32 E-value=17 Score=41.23 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
++--|+.||++.|+....-+-. .|..|+. +-+||+-+|-.||-+|+-..
T Consensus 58 ~~tews~eederlLhlakl~p~-qwrtIa~-----i~gr~~~qc~eRy~~ll~~~ 106 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPT-QWRTIAD-----IMGRTSQQCLERYNNLLDVY 106 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCC-ccchHHH-----HhhhhHHHHHHHHHHHHHHH
Confidence 3567999999999999888877 9999974 45899999999999998743
No 38
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=40.42 E-value=53 Score=31.25 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 487 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 487 (554)
++.++=|..|.+.+...|++||. .+.....+.--..-..|..||+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56788899999999999999997 77777654332334689999998877653
No 39
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=31.78 E-value=40 Score=26.13 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=12.4
Q ss_pred CCCCCCCCHHHHHHH
Q 008766 434 RKHHRAWTLSEVMKL 448 (554)
Q Consensus 434 RKkrr~WT~EEveaL 448 (554)
...+.+||.+|++.|
T Consensus 46 ~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 46 KISRGPWTKEEDQRL 60 (60)
T ss_dssp TSTSSSSSHHHHHHH
T ss_pred cccCCCcCHHHHhcC
Confidence 355788999999987
No 40
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=31.49 E-value=26 Score=34.54 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhh-hcccCCCCChhhHHHHHHHhhcc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRL-AFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~-~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
+...||.||+..|-+-|-+|+.--=+.+... .....-.||+..|.+||-..++.
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk 58 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRK 58 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Confidence 3568999999999999999986333344311 11223589999999999665553
No 41
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=25.31 E-value=1.6e+02 Score=34.66 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhh
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEI 463 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~I 463 (554)
.++.||-.|++.+.+|+..||. .+..|
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GK-dFe~V 113 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGK-DFEKV 113 (782)
T ss_pred cccccchhhHHHHHHHHHHhcc-cHHHH
Confidence 3779999999999999999998 77776
Done!