Query 008766
Match_columns 554
No_of_seqs 168 out of 438
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 11:13:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 1.1E-22 3.9E-27 177.7 8.2 86 432-526 8-93 (105)
2 2roh_A RTBP1, telomere binding 99.9 1.7E-21 5.7E-26 174.4 10.8 102 418-528 8-113 (122)
3 2ckx_A NGTRF1, telomere bindin 99.8 4.5E-21 1.5E-25 161.1 7.3 81 438-527 1-81 (83)
4 2juh_A Telomere binding protei 99.8 1E-19 3.4E-24 162.7 9.7 86 431-525 11-96 (121)
5 1x58_A Hypothetical protein 49 99.6 2.6E-16 9E-21 126.8 6.7 54 435-490 6-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 9.2E-16 3.1E-20 122.7 6.2 55 435-491 9-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.5 9.1E-15 3.1E-19 117.0 6.8 63 432-496 5-67 (69)
8 1w0t_A Telomeric repeat bindin 99.5 3.9E-14 1.3E-18 108.1 5.4 52 436-489 1-52 (53)
9 2dim_A Cell division cycle 5-l 99.3 1.2E-12 4.3E-17 104.7 6.9 60 434-497 6-65 (70)
10 2d9a_A B-MYB, MYB-related prot 99.3 2.1E-12 7.1E-17 100.5 6.3 55 433-491 4-58 (60)
11 1guu_A C-MYB, MYB proto-oncoge 99.3 1.9E-12 6.6E-17 97.9 5.6 51 436-490 2-52 (52)
12 1gvd_A MYB proto-oncogene prot 99.3 4.8E-12 1.6E-16 95.9 6.0 51 436-490 2-52 (52)
13 1x41_A Transcriptional adaptor 99.2 3.4E-11 1.2E-15 94.2 5.6 53 434-490 5-57 (60)
14 1gv2_A C-MYB, MYB proto-oncoge 99.1 5.2E-11 1.8E-15 100.9 6.8 58 436-497 3-60 (105)
15 3osg_A MYB21; transcription-DN 99.1 1.1E-10 3.6E-15 102.8 6.9 60 433-497 7-66 (126)
16 2k9n_A MYB24; R2R3 domain, DNA 99.1 8E-11 2.7E-15 100.8 5.9 57 437-497 1-57 (107)
17 2elk_A SPCC24B10.08C protein; 99.1 7.2E-11 2.5E-15 92.1 4.6 47 437-487 9-56 (58)
18 3zqc_A MYB3; transcription-DNA 99.1 1.7E-10 5.7E-15 102.0 6.9 57 437-497 2-58 (131)
19 1h8a_C AMV V-MYB, MYB transfor 99.0 2.4E-10 8.3E-15 100.3 6.6 59 435-497 25-83 (128)
20 2din_A Cell division cycle 5-l 99.0 3.1E-10 1.1E-14 89.9 3.6 54 435-494 7-60 (66)
21 2yum_A ZZZ3 protein, zinc fing 98.9 4.6E-10 1.6E-14 90.7 4.5 55 433-491 4-63 (75)
22 2cu7_A KIAA1915 protein; nucle 98.9 7.5E-10 2.6E-14 89.3 4.8 55 434-493 6-60 (72)
23 2yus_A SWI/SNF-related matrix- 98.9 9.3E-10 3.2E-14 91.4 4.8 53 431-488 12-64 (79)
24 1h89_C C-MYB, MYB proto-oncoge 98.8 3.2E-09 1.1E-13 96.1 6.5 58 436-497 57-114 (159)
25 1h89_C C-MYB, MYB proto-oncoge 98.8 6.5E-10 2.2E-14 100.6 1.9 58 436-497 5-62 (159)
26 2llk_A Cyclin-D-binding MYB-li 98.8 2E-09 6.7E-14 88.7 4.5 50 434-489 20-69 (73)
27 3zqc_A MYB3; transcription-DNA 98.8 5.6E-09 1.9E-13 92.2 7.4 58 436-498 53-110 (131)
28 1gv2_A C-MYB, MYB proto-oncoge 98.7 8.9E-09 3E-13 87.2 5.8 49 436-489 55-103 (105)
29 2cqr_A RSGI RUH-043, DNAJ homo 98.7 7.3E-09 2.5E-13 85.2 4.8 54 432-489 13-69 (73)
30 3osg_A MYB21; transcription-DN 98.7 1.7E-08 5.8E-13 88.8 6.0 52 436-492 61-112 (126)
31 2k9n_A MYB24; R2R3 domain, DNA 98.6 1.6E-08 5.4E-13 86.6 4.2 50 436-490 52-101 (107)
32 1h8a_C AMV V-MYB, MYB transfor 98.6 3E-08 1E-12 86.9 6.1 50 436-490 78-127 (128)
33 2ltp_A Nuclear receptor corepr 98.0 6.8E-09 2.3E-13 87.4 0.0 51 435-490 14-64 (89)
34 2cjj_A Radialis; plant develop 98.3 2.7E-07 9.2E-12 79.1 4.3 49 437-489 8-59 (93)
35 1ign_A Protein (RAP1); RAP1,ye 98.2 1.1E-06 3.8E-11 86.8 4.8 54 435-492 6-64 (246)
36 2eqr_A N-COR1, N-COR, nuclear 98.1 5.1E-06 1.7E-10 65.4 6.1 52 432-488 7-58 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 97.8 1.4E-05 4.7E-10 65.6 4.4 50 435-489 6-58 (72)
38 3hm5_A DNA methyltransferase 1 97.6 4.6E-05 1.6E-09 65.7 4.9 52 438-490 31-83 (93)
39 1wgx_A KIAA1903 protein; MYB D 97.3 0.00036 1.2E-08 57.8 5.6 48 438-489 9-59 (73)
40 2iw5_B Protein corest, REST co 97.3 0.00021 7.1E-09 70.4 4.9 50 434-488 130-179 (235)
41 2ebi_A DNA binding protein GT- 97.2 0.00013 4.6E-09 60.1 2.3 54 435-489 2-65 (86)
42 1fex_A TRF2-interacting telome 97.1 0.00047 1.6E-08 54.5 4.1 49 437-488 2-58 (59)
43 4b4c_A Chromodomain-helicase-D 96.9 0.00095 3.2E-08 62.3 5.2 52 437-488 134-195 (211)
44 4iej_A DNA methyltransferase 1 96.6 0.0018 6.3E-08 55.9 4.8 50 439-489 32-82 (93)
45 2yqk_A Arginine-glutamic acid 96.4 0.0074 2.5E-07 47.8 6.4 52 434-489 6-57 (63)
46 2xb0_X Chromo domain-containin 95.9 0.0039 1.3E-07 62.3 3.2 31 438-468 169-199 (270)
47 2crg_A Metastasis associated p 95.7 0.021 7.2E-07 46.2 6.2 52 434-489 5-56 (70)
48 4eef_G F-HB80.4, designed hema 95.2 0.0065 2.2E-07 50.7 1.7 44 437-484 20-66 (74)
49 2xag_B REST corepressor 1; ami 95.0 0.016 5.5E-07 62.1 4.6 49 435-488 378-426 (482)
50 1ofc_X ISWI protein; nuclear p 94.8 0.014 4.7E-07 59.4 3.2 54 436-489 211-275 (304)
51 4b4c_A Chromodomain-helicase-D 93.9 0.048 1.6E-06 50.7 4.5 53 434-488 4-58 (211)
52 4a69_C Nuclear receptor corepr 93.1 0.12 4.2E-06 44.0 5.4 48 434-486 40-87 (94)
53 2y9y_A Imitation switch protei 93.1 0.058 2E-06 56.3 4.0 53 437-489 228-291 (374)
54 1irz_A ARR10-B; helix-turn-hel 92.8 0.22 7.4E-06 40.4 6.1 54 433-488 3-61 (64)
55 1ug2_A 2610100B20RIK gene prod 87.6 0.66 2.2E-05 40.4 4.9 52 434-489 30-83 (95)
56 2lr8_A CAsp8-associated protei 85.7 0.16 5.4E-06 42.1 0.0 49 436-489 13-63 (70)
57 2xb0_X Chromo domain-containin 83.7 1.5 5.2E-05 43.8 6.0 50 436-487 2-53 (270)
58 1ign_A Protein (RAP1); RAP1,ye 82.8 0.96 3.3E-05 45.0 4.2 28 458-489 172-199 (246)
59 2xag_B REST corepressor 1; ami 58.6 2 7E-05 46.2 0.0 47 438-489 190-236 (482)
60 1ofc_X ISWI protein; nuclear p 51.5 15 0.00052 37.3 5.0 48 437-488 110-157 (304)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.87 E-value=1.1e-22 Score=177.68 Aligned_cols=86 Identities=37% Similarity=0.646 Sum_probs=75.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCcccccccCCCCCCC
Q 008766 432 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPI 511 (554)
Q Consensus 432 krRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~pi 511 (554)
++|+++++||+|||++|++||++||.|+|+.|+..+|..|.+||++|||||||||++.+... |.. | ...||
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~-p~~-----~---rg~~~ 78 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKIS-PQQ-----R---RGEPV 78 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCC-TTT-----T---TCCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCC-ccc-----c---cCCCC
Confidence 56888999999999999999999999999999987777789999999999999999977652 322 2 46899
Q ss_pred ChHHHHHHHHHHhhc
Q 008766 512 PMPVLLRVRELAEMQ 526 (554)
Q Consensus 512 P~~iL~RVreLA~~q 526 (554)
|+++|+||++|++..
T Consensus 79 P~~~l~rv~~~~~~~ 93 (105)
T 2aje_A 79 PQELLNRVLNAHGYW 93 (105)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998874
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.85 E-value=1.7e-21 Score=174.37 Aligned_cols=102 Identities=35% Similarity=0.533 Sum_probs=82.2
Q ss_pred CCCCCcccccCCCC----CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCC
Q 008766 418 PDDNPATVRAVKGG----VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 493 (554)
Q Consensus 418 s~d~~~~~p~~k~g----krRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q 493 (554)
+.+..+.+|..|.+ ++||++++||+|||++|++||++||.|+|+.|+..+|..|.+||++|||||||||++.+...
T Consensus 8 ~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~ 87 (122)
T 2roh_A 8 NSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIA 87 (122)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCC
Confidence 33444445554433 56888999999999999999999999999999998777889999999999999999866542
Q ss_pred CCCCcccccccCCCCCCCChHHHHHHHHHHhhcCC
Q 008766 494 TPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQ 528 (554)
Q Consensus 494 ~p~~~g~~~Rk~~~~~piP~~iL~RVreLA~~q~~ 528 (554)
|.. + +..++|+++++||+++...+.+
T Consensus 88 -p~~-----k---r~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 88 -PQQ-----R---RGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp -TTT-----C---CCSSCCHHHHHHHHHHHHHHHS
T ss_pred -ccc-----c---CCCCCCHHHHHHHHHHHHHHhh
Confidence 322 1 3678999999999998877543
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.83 E-value=4.5e-21 Score=161.12 Aligned_cols=81 Identities=38% Similarity=0.654 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCcccccccCCCCCCCChHHHH
Q 008766 438 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLL 517 (554)
Q Consensus 438 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~piP~~iL~ 517 (554)
++||+|||++|++||++||.|+|+.|++.+|..|++||++|||||||||++.+... |.. + .+.|||+++|+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~-p~~------~--~~~~~p~~~~~ 71 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA-PQQ------R--RGEPVPQDLLD 71 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC-GGG------C--CSSCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCC-ccc------c--cCCCCCHHHHH
Confidence 58999999999999999999999999988777789999999999999999976542 211 1 47899999999
Q ss_pred HHHHHHhhcC
Q 008766 518 RVRELAEMQS 527 (554)
Q Consensus 518 RVreLA~~q~ 527 (554)
||++|.....
T Consensus 72 rv~~~~a~~~ 81 (83)
T 2ckx_A 72 RVLAAHAYWS 81 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.80 E-value=1e-19 Score=162.71 Aligned_cols=86 Identities=37% Similarity=0.633 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCcccccccCCCCCC
Q 008766 431 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVP 510 (554)
Q Consensus 431 gkrRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~p 510 (554)
.++++++++||+|||++|++||++||.|+|+.|+..++..|.+||++|||||||||++.+..+ |.. + .+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~-p~~-----k---rg~~ 81 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA-PQQ-----R---RGEP 81 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTC-STT-----C---CCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccC-Ccc-----c---CCCC
Confidence 367888999999999999999999999999999998777889999999999999999965542 321 1 3669
Q ss_pred CChHHHHHHHHHHhh
Q 008766 511 IPMPVLLRVRELAEM 525 (554)
Q Consensus 511 iP~~iL~RVreLA~~ 525 (554)
+|+++++||+++...
T Consensus 82 ~p~e~~~rv~~~h~~ 96 (121)
T 2juh_A 82 VPQDLLDRVLAAHAY 96 (121)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998877
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=2.6e-16 Score=126.76 Aligned_cols=54 Identities=28% Similarity=0.414 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
+.+++||+||+++|++||++||. +|+.|+..+ ..|.+||+||||||||||.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y-~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSF-PFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHS-CCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhC-CCccCcccchHHHHHHHHHhcc
Confidence 56889999999999999999999 999999754 3479999999999999999864
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.59 E-value=9.2e-16 Score=122.69 Aligned_cols=55 Identities=33% Similarity=0.727 Sum_probs=48.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 491 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 491 (554)
+++++||+|||++|+++|++||.|+|+.|+... .|.+||++||+|||+||+|+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY--PFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhc--CCCCCCHHHHHHHHHHHhccCC
Confidence 457899999999999999999999999998642 2679999999999999999875
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.53 E-value=9.1e-15 Score=117.04 Aligned_cols=63 Identities=40% Similarity=0.678 Sum_probs=54.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCC
Q 008766 432 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPP 496 (554)
Q Consensus 432 krRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~ 496 (554)
+.++++++||+||++.|+++|++||.++|+.|+... .|.+||++||++||+|++++.+.+...
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc--CcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 456789999999999999999999999999998531 133999999999999999999886543
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.47 E-value=3.9e-14 Score=108.14 Aligned_cols=52 Identities=44% Similarity=0.760 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
++++||+|||+.|+++|++||.++|+.|+... .|.+||++||++||+|+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCCCHHHHHHHHHHHHcc
Confidence 47899999999999999999999999998531 13389999999999999875
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=104.73 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
..++++||+||++.|+++|++||.++|..|+. .+++||..||++||.|++++.+.++||.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt 65 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS----LLHRKSAKQCKARWYEWLDPSIKKTEWS 65 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH----HSTTCCHHHHHHHHHHTSCSSSCCCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HhcCCCHHHHHHHHHHHcCCcccCCCCC
Confidence 35678999999999999999999999999984 3679999999999999999999999996
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=2.1e-12 Score=100.51 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=49.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 008766 433 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 491 (554)
Q Consensus 433 rRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 491 (554)
...++.+||+|||+.|+++|++||.++|..|+. .|++||..||++||.+++++.+
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS----HFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH----HCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HccCCCHHHHHHHHHHHcCCcc
Confidence 345678999999999999999999999999984 3689999999999999999865
No 11
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.31 E-value=1.9e-12 Score=97.91 Aligned_cols=51 Identities=27% Similarity=0.504 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
++.+||+|||+.|+++|++||.++|..|+. .|++||..||++||.+++.+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN----YLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH----TSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HcCCCCHHHHHHHHHHHcCcC
Confidence 368999999999999999999999999983 468999999999999998763
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.27 E-value=4.8e-12 Score=95.91 Aligned_cols=51 Identities=31% Similarity=0.588 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
++.+||+|||+.|+++|++||.++|..|+ ..+++||..+|++||.|++.+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia----~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIA----KHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHH----TTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHH----HHcCCCCHHHHHHHHHHHcCcC
Confidence 36799999999999999999999999997 3468999999999999998763
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.15 E-value=3.4e-11 Score=94.24 Aligned_cols=53 Identities=21% Similarity=0.472 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
...+.+||+|||+.|+++|++||.++|..|+. .+++||..||++||.+++...
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVAN----QMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH----HHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH----HhCCCCHHHHHHHHHHHccCC
Confidence 34578999999999999999999999999984 357899999999999998754
No 14
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.14 E-value=5.2e-11 Score=100.95 Aligned_cols=58 Identities=28% Similarity=0.509 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
++++||+||++.|+++|++||.++|..|+ ..+++||+.+|++||++++.+.+..+||.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia----~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 60 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIA----KHLKGRIGKQCRERWHNHLNPEVKKTSWT 60 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHH----TTSTTCCHHHHHHHHHHTTCCCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHh----hhhcCCCHHHHHHHHHhccCCcccccCCC
Confidence 46799999999999999999999999997 34689999999999999999988878885
No 15
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.10 E-value=1.1e-10 Score=102.82 Aligned_cols=60 Identities=27% Similarity=0.525 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 433 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 433 rRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
+..++++||+|||+.|+++|++||. +|..|+ ..+++||+.||++||+|.+.+.+..++|.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia----~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT 66 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA----ATFPNRNARQCRDRWKNYLAPSISHTPWT 66 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH----HTCTTCCHHHHHHHHHHHTSTTSCCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH----HHcCCCCHHHHHHHHhhhcccccccccCC
Confidence 4566889999999999999999999 999997 34789999999999999999999888886
No 16
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.09 E-value=8e-11 Score=100.82 Aligned_cols=57 Identities=26% Similarity=0.478 Sum_probs=52.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
+++||+|||+.|+++|++||.++|..|.. .+++||+.||++||.|++.+.+..+||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT 57 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ----LMITRNPRQCRERWNNYINPALRTDPWS 57 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH----HTTTSCHHHHHHHHHHHSSSCCTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh----hcCCCCHHHHHHHHHHHHcccccccccC
Confidence 46899999999999999999999999973 4679999999999999999998888885
No 17
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.08 E-value=7.2e-11 Score=92.12 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC-CCChhhHHHHHHHhh
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLL 487 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~-~RT~VDLKDKWRNLl 487 (554)
+.+||+|||+.|+++|++||.++|..|+. .++ +||..||++||.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~----~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIAD----YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHH----HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HHCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999999974 356 899999999999874
No 18
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.07 E-value=1.7e-10 Score=101.99 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
+++||+|||+.|+.+|++||.++|..|+ ..+++||+.||++||.|.+.+.+.+++|.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 58 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRIT----SFLPNRSPKQCRERWFNHLDPAVVKHAWT 58 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGT----TSCTTSCHHHHHHHHHHHTSTTCCCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHH----HHHCCCCHHHHHHHHhhccCccccCCCCC
Confidence 5789999999999999999999999997 45789999999999999999999888885
No 19
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.04 E-value=2.4e-10 Score=100.28 Aligned_cols=59 Identities=29% Similarity=0.581 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
-++++||+|||+.|+++|++||.++|..|+. .+++||..+|++||.+++.+.+..+||.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 83 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 83 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH----HSSSCCHHHHHHHHHHTTCSSSCCSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH----HhcCCcHHHHHHHHHHhcccccccccCC
Confidence 3468999999999999999999999999973 4689999999999999999988888885
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.1e-10 Score=89.88 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCC
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQT 494 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~ 494 (554)
.++.+||.||++.|+++|++||. +|..|+. +.+||..+|++||.+++++.+...
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-----~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-----IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-----HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-----ccCcCHHHHHHHHHHHhChHhcCC
Confidence 45679999999999999999999 9999984 347999999999999999887654
No 21
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.6e-10 Score=90.74 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCC-----CCchhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 008766 433 RRKHHRAWTLSEVMKLVEGVSKYGA-----GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 491 (554)
Q Consensus 433 rRKkrr~WT~EEveaLv~GVeKyG~-----GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 491 (554)
....+.+||.||++.|+++|++||. ++|..|.. .+.+||..||+++|.+++....
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~----~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD----ELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH----HHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH----HhCCCCHHHHHHHHHHHHHHHH
Confidence 3455779999999999999999997 79999974 3679999999999999887654
No 22
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.92 E-value=7.5e-10 Score=89.32 Aligned_cols=55 Identities=25% Similarity=0.481 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCC
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 493 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q 493 (554)
...+.+||+||++.|+++|++||. +|..|.. .|++||..+||++|.++++.....
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~----~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR-RWTKISK----LIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999 9999984 368999999999999999876553
No 23
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.90 E-value=9.3e-10 Score=91.41 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 431 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 431 gkrRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
++.+..+.+||.||++.|+++|++|| ++|..|+. .+.+||..||+.+|.++.-
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~----~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSE----HVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHH----HHSSCCHHHHHHHHTTSCC
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHH----HcCCCCHHHHHHHHHHhcc
Confidence 34556678999999999999999999 89999984 3578999999999999833
No 24
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.84 E-value=3.2e-09 Score=96.13 Aligned_cols=58 Identities=28% Similarity=0.527 Sum_probs=52.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
.+.+||+||++.|+++|++||.++|..|.. .+++||..+|++||.+++.+.+..+||.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 114 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 114 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHH----TSTTCCHHHHHHHHHHTTCTTSCCSCCC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHH----HcCCCCHHHHHHHHHHHhCccccccCCC
Confidence 468999999999999999999999999973 4689999999999999999887777774
No 25
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.84 E-value=6.5e-10 Score=100.62 Aligned_cols=58 Identities=28% Similarity=0.475 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 497 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 497 (554)
.+++||+|||+.|+++|++||.++|..|+ ..+++||+.||++||+|++.+.+.++||.
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia----~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 62 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIA----NYLPNRTDVQCQHRWQKVLNPELIKGPWT 62 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTCTTCCCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHH----HHcCCCCHHHHHHHHHHccCCCcCCCCCC
Confidence 46789999999999999999999999997 34679999999999999999998888885
No 26
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.83 E-value=2e-09 Score=88.70 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
.-++.+||+|||+.|+++|++||. +|+.|++ .| +||..+||++|+.|.+.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~----~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGA----AL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH----HH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH----Hh-CCCHHHHHHHHHHHHHH
Confidence 345789999999999999999998 6999974 36 99999999999987653
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.83 E-value=5.6e-09 Score=92.23 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=51.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 498 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~ 498 (554)
.+.+||+||++.|+++|.+||. +|+.|. ..|++||..+|++||.++++..+...++.+
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia----~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIA----KLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHT----TTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHH----HHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 3568999999999999999996 999997 357899999999999999999888777654
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.74 E-value=8.9e-09 Score=87.22 Aligned_cols=49 Identities=24% Similarity=0.533 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
.+.+||+||++.|+.+|++||. +|+.|. ..|++||..+|++||+++++.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia----~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA----KLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHH----TTCTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHH----HHcCCCCHHHHHHHHHHHHhc
Confidence 4679999999999999999997 999997 347899999999999999875
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.74 E-value=7.3e-09 Score=85.23 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=46.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCC---CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 432 VRRKHHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 432 krRKkrr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
+.+..+.+||.+|+..|+.+|++||. .+|..|+ ..+++||..+|+.+|.+|+..
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA----~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA----RCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG----GGCSSSCHHHHHHHHHHHHSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH----HHcCCCCHHHHHHHHHHHHHc
Confidence 44556789999999999999999994 5899997 457899999999999999874
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.69 E-value=1.7e-08 Score=88.81 Aligned_cols=52 Identities=27% Similarity=0.580 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 492 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 492 (554)
.+.+||+|||+.|+++|++||. +|+.|. ..|++||..+|++||++|++.--.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia----~~l~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIA----KFFPGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHH----TTSTTCCHHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHH----HHcCCCCHHHHHHHHHHHHHhcCC
Confidence 3568999999999999999996 999997 357899999999999999885433
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.64 E-value=1.6e-08 Score=86.57 Aligned_cols=50 Identities=20% Similarity=0.579 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
.+.+||+||++.|+.+|.+||. +|+.|.. .|++||..+|++||++|++..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISK----FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhhH
Confidence 3679999999999999999998 9999984 368999999999999999863
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.64 E-value=3e-08 Score=86.94 Aligned_cols=50 Identities=24% Similarity=0.516 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
++.+||+||++.|+++|++||. +|+.|. ..|++||..+||++|+++++..
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia----~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA----KLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHG----GGSTTCCHHHHHHHHHTTTTC-
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHH----HHCCCCCHHHHHHHHHHHHhcc
Confidence 4679999999999999999997 999997 3478999999999999998753
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.99 E-value=6.8e-09 Score=87.41 Aligned_cols=51 Identities=24% Similarity=0.321 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
-.+.+||.||++.|+++|++||. +|..|. ..|++||..+|+.+|.++++..
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA----~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIA----RMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34679999999999999999999 899997 3478999999999999998853
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.35 E-value=2.7e-07 Score=79.13 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHhhC---CCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 437 HRAWTLSEVMKLVEGVSKYG---AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG---~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
..+||.||+..|++++++|| ..+|..|+ ..+++||..+|+.+|.+|+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA----~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVA----RAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHH----HHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHH----HHcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999998 45799998 347899999999999999753
No 35
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.17 E-value=1.1e-06 Score=86.77 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCC-----chhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 492 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~Gk-----Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 492 (554)
-.+.+||+|||+.|++.|++||..+ |..|+ ..+++||.-+||+||++++++.+.
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA----k~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS----HYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT----TTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHH----HHcCCCCHHHHHHHHHHHHhhhcc
Confidence 3467999999999999999999854 99997 347999999999999999998764
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=5.1e-06 Score=65.40 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=45.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 432 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 432 krRKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
+.|+...+||++|.+.+++|+.+||. +|..|+ ..+++||..||...|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia----~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA----SYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH----HHCTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH----HHcCCCCHHHHHHHHHHhcC
Confidence 55778899999999999999999996 999997 34789999999999977654
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.82 E-value=1.4e-05 Score=65.56 Aligned_cols=50 Identities=24% Similarity=0.474 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
.....||.||+..|.+++.+|+. .+|..|+.. + +||..|++.+|..|...
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~----l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE----L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----h-CCCHHHHHHHHHHHHHh
Confidence 34568999999999999999994 579999843 3 79999999999999876
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.63 E-value=4.6e-05 Score=65.70 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhh-cccCCCCChhhHHHHHHHhhccc
Q 008766 438 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLA-FASYSYRTSVDLKDKWRNLLKAS 490 (554)
Q Consensus 438 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~-f~~f~~RT~VDLKDKWRNLlK~s 490 (554)
.+||.||++.|.+.+++||. +|..|.+.+ +..+..||-.|||+||..+++.-
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999 999998632 12346899999999998887743
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.26 E-value=0.00036 Score=57.79 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 438 RAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 438 r~WT~EEveaLv~GVeKyG~---GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
..||.+|+.+|.+++..|+. ++|..|+ ..+++||..+|+.+|..|.+.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA----~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA----AAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH----HHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHH----HHcCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999986 6899997 346789999999999999664
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.26 E-value=0.00021 Score=70.37 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
.+...+||+||.+.+++|+.+||. +|..|.+ .+.+||..+||..|.+..+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk----~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD----VIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH----HHSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999998 9999984 3679999999999987665
No 41
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.18 E-value=0.00013 Score=60.10 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---------CCchhhhhh-hcccCCCCChhhHHHHHHHhhcc
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGA---------GRWSEIKRL-AFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~---------GkWk~Il~~-~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
++...||.+|+.+||.....+-. ..|..|... .-.-| .||+.+|++||.||.+.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~-~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF-DRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHH
Confidence 45778999999999999975322 279999852 11112 79999999999999995
No 42
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.05 E-value=0.00047 Score=54.47 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 437 HRAWTLSEVMKLVEGVSKY--------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKy--------G~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
|.+||+|||.+|++-|.+| |.--|+.+.. ..++.+|-..++|||++-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~---~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEK---SSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHH---SCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHH---hHCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 6667988863 24689999999999998664
No 43
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.86 E-value=0.00095 Score=62.27 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccC----------CCCChhhHHHHHHHhhc
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASY----------SYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f----------~~RT~VDLKDKWRNLlK 488 (554)
...||.+||..|+.||.+||.|+|..|+++....| ..++++.|..|--.|++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 45699999999999999999999999997543222 23455666666444443
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.62 E-value=0.0018 Score=55.94 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhhhhhhc-ccCCCCChhhHHHHHHHhhcc
Q 008766 439 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 439 ~WT~EEveaLv~GVeKyG~GkWk~Il~~~f-~~f~~RT~VDLKDKWRNLlK~ 489 (554)
.||.||++.|.+.+++|+. +|--|.+.+- ..+..||--|||+||-.+++.
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999 9999986432 235689999999998776653
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.0074 Score=47.83 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=43.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
+.....||+||.+...+|+.+||. .|..|... .++.||..||..-|-...|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE---LLPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH---SCTTSCHHHHHHHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCcHHHHHHHHhcccCC
Confidence 455679999999999999999999 89999731 36899999999887654443
No 46
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.87 E-value=0.0039 Score=62.32 Aligned_cols=31 Identities=45% Similarity=0.811 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhc
Q 008766 438 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF 468 (554)
Q Consensus 438 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f 468 (554)
-.|+.+||..|+.||-+||.|+|..|+.+..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~ 199 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDPF 199 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCTT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCcc
Confidence 4699999999999999999999999997644
No 47
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.65 E-value=0.021 Score=46.20 Aligned_cols=52 Identities=15% Similarity=0.365 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
|+....||++|.....+|+.+||. +|..|.. ..+++||..||..-|-...|.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~---~~v~~Kt~~~~v~fYY~wKkt 56 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQ---DFLPWKSLTSIIEYYYMWKTT 56 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHH---TTCSSSCHHHHHHHHHHHHTC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHH---HHcCCCCHHHHHHHHHhhcCC
Confidence 577889999999999999999999 8999973 136899999999988755554
No 48
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=95.18 E-value=0.0065 Score=50.74 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC---CchhhhhhhcccCCCCChhhHHHHHH
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAG---RWSEIKRLAFASYSYRTSVDLKDKWR 484 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~G---kWk~Il~~~f~~f~~RT~VDLKDKWR 484 (554)
-..||.+|..+|..++.+|+.+ +|..|+ ..+++||..+++..+.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA----~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVA----QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTG----GGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH----HHcCCCCHHHHHHHHH
Confidence 4579999999999999999976 999997 4578999999987664
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.02 E-value=0.016 Score=62.11 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 435 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 435 Kkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
+...+||.+|.+.+++||.+||. +|..|.. .+..||..|||.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~----~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD----VIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHH----HHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HhCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999998 9999984 3578999999998866444
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.83 E-value=0.014 Score=59.40 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CCchhhhhh-------hccc-CCCCChhhHHHHHHHhhcc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-------AFAS-YSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~---GkWk~Il~~-------~f~~-f~~RT~VDLKDKWRNLlK~ 489 (554)
+.+.||.+|+..|+-++.+||. |.|..|+.. .|+. |..||+.+|..|-..|++.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999 999999742 1222 3699999999999999875
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.91 E-value=0.048 Score=50.75 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=41.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC--CCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG--~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
|.....||..|...|++++.+|| .++|..|..+ ..|.++|..++++=++.+..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~d--a~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD--AELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHH--TTCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHH--hccCCCCHHHHHHHHHHHHH
Confidence 46678999999999999999999 6899999865 34789999999985555443
No 52
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=93.13 E-value=0.12 Score=43.96 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=40.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHh
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNL 486 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNL 486 (554)
|+....||+||-+.+.+++..||. +|..|. ..+++||..+|-.=|-..
T Consensus 40 r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia----~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 40 RQVMNMWSEQEKETFREKFMQHPK-NFGLIA----SFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH----HTCTTCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH----HHcCCCCHHHHHHHHhcc
Confidence 466789999999999999999998 999996 347899999998765443
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.13 E-value=0.058 Score=56.31 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CCchhhhhh-----h--ccc-CCCCChhhHHHHHHHhhcc
Q 008766 437 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-----A--FAS-YSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~-----~--f~~-f~~RT~VDLKDKWRNLlK~ 489 (554)
.+.||.+||..|+-++.+||. |.|..|+.. . |+- |..||+..|..|-..|++.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 458999999999999999999 999999753 1 222 3689999999999999885
No 54
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.85 E-value=0.22 Score=40.44 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=40.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCC--chhhhhhhcccCCCCChhhHHH---HHHHhhc
Q 008766 433 RRKHHRAWTLSEVMKLVEGVSKYGAGR--WSEIKRLAFASYSYRTSVDLKD---KWRNLLK 488 (554)
Q Consensus 433 rRKkrr~WT~EEveaLv~GVeKyG~Gk--Wk~Il~~~f~~f~~RT~VDLKD---KWRNLlK 488 (554)
.+|+|-.||+|.-+.++++|+++|..+ |+.|++.- ...+.|..+++. |||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M--~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLM--NVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999532 67887532 246889999985 4555443
No 55
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=87.59 E-value=0.66 Score=40.37 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 434 RKHHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 434 RKkrr~WT~EEveaLv~GVeKyG~--GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
-.+---||.|||..++...++-|. -.|+.|. ..+.+|+.-++++|++.|++-
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA----~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVIS----QQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH----HHHSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHH----HHHccCCHHHHHHHHHHHHHH
Confidence 356778999999999999999996 5788886 346789999999999999984
No 56
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=85.73 E-value=0.16 Score=42.08 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC--CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 436 HHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG~--GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
.--.||.|||..++...++-|. -.|+.|. ..+ +|+.-++++|++.|++-
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA----~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLA----AKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4567999999999999999997 4788886 345 89999999999999874
No 57
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.65 E-value=1.5 Score=43.84 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 008766 436 HHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 487 (554)
Q Consensus 436 krr~WT~EEveaLv~GVeKyG--~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 487 (554)
+++.||..|...|++++.+|| .++|..|..+ ..|..+....++.=+..|+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~d--A~L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIAD--GTLPVKSFEKYGETYDEMM 53 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHT--TSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh--cccccCCHHHHHHHHHHHH
Confidence 467899999999999999999 4899999865 4578888888886665444
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=82.78 E-value=0.96 Score=45.01 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=23.3
Q ss_pred CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 458 GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 458 GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
+.|+.|. ..|++||....|||||.+++.
T Consensus 172 ~~fk~ia----~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 172 EFFKHFA----EEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp THHHHHH----HHTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHH----HHCCCCChhhHHHHHHHHHhh
Confidence 3688886 347899999999999988874
No 59
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=58.57 E-value=2 Score=46.19 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 008766 438 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 489 (554)
Q Consensus 438 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 489 (554)
..||.+|...+.+|+.+||. +|..|. ..+++||..+|-.-|....|.
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~----~~lp~Ksv~e~V~yYY~WKKt 236 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQ----QMLPDKSIASLVKFYYSWKKT 236 (482)
T ss_dssp ----------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHH----HHcCCCCHHHHHHHhcccccc
Confidence 47999999999999999999 899997 347899999998765444443
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=51.50 E-value=15 Score=37.35 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 008766 437 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 488 (554)
Q Consensus 437 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 488 (554)
-..||..+-.+++.|+++||...|..|+ ..+.+.|..+++.=...+..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA----~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIA----KDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHT----TSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHH----HHhcCCCHHHHHHHHHHHHH
Confidence 5569999999999999999999999997 34568999999877555554
Done!