BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008767
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/552 (42%), Positives = 337/552 (61%), Gaps = 7/552 (1%)
Query: 4 PVPAAVSSSIGEARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSA 63
P + +SS+ E RP A F P++WG FL + ID T++++ LK+EVR+MI +
Sbjct: 9 PSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAP 66
Query: 64 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRV 123
+ + KL ID+VQRLGV+Y F KEIEDEL+ + ++ ++LYT S+RFRLLR+
Sbjct: 67 MANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGY 126
Query: 124 KISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMI 183
+SCDV +S+ ++VRG+L LY+A++L VHGE ILDEAI FTT HL S+
Sbjct: 127 NVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHL-SLA 185
Query: 184 SRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAA 243
+ + L+E++ H +YL++Y + H++ LL+FAK+DFN+LQ
Sbjct: 186 VASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFL 245
Query: 244 HQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLIS 303
H+KELS++ RWWKDLD KLPYARDR+VE YFW + GVY EP+Y+ GR +++K+I + S
Sbjct: 246 HRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGRKMLTKVIAMAS 304
Query: 304 LIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGR 363
++DDT+D+Y T+EEL +T A++RWD D +P MK Y LL VY E + +A+ GR
Sbjct: 305 IVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGR 364
Query: 364 SYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDI 423
Y + YAK M + Y EAKW + Y PS EE+K+ AL + + SF+ MGDI
Sbjct: 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI 424
Query: 424 ATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAE 483
T E F+W PKII AS ICR +DDVA HKF+ +R SA+ECYM+++ V+ +EA
Sbjct: 425 VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAY 484
Query: 484 KALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYK-MKD 542
+ + WKDLN +E LNLAR+ + +Y +G D YT K K
Sbjct: 485 DVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKG 542
Query: 543 QVALVLKDPVTF 554
+ +L +P+
Sbjct: 543 GITSLLIEPIAL 554
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/538 (40%), Positives = 327/538 (60%), Gaps = 8/538 (1%)
Query: 17 RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDA 76
RP+A F P+LWG FL S D Q + +E +ALK++ R M+ + +++ L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKE-IEALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 77 VQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLLRQ IS ++
Sbjct: 74 IERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 137 XXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQ 196
S+ ++V G+L+LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVT 191
Query: 197 HXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255
H ++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWW
Sbjct: 192 HALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWW 251
Query: 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF 315
KDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT
Sbjct: 252 KDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTV 310
Query: 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQ 375
+EL +T+A++RWD N D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+
Sbjct: 311 KELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMK 370
Query: 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKV 435
EV+ Y E+ W EGY P V EY S AL + + T S+L M AT++ FEW+ K
Sbjct: 371 EVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKN 429
Query: 436 PKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495
PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +S +EA WK
Sbjct: 430 PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWK 489
Query: 496 DLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 552
D+N E P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 490 DIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/538 (40%), Positives = 327/538 (60%), Gaps = 8/538 (1%)
Query: 17 RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDA 76
RP+A F P+LWG FL S D Q + QE +ALK++ R M+ + +++ L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQE-IEALKEQTRSMLLATGRKLADTLNLIDI 73
Query: 77 VQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
++RLG++Y FEKEI++ L ++ N S+ ++L T +L+FRLLRQ IS ++
Sbjct: 74 IERLGISYHFEKEIDEILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 137 XXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQ 196
S+ ++V G+L+LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVT 191
Query: 197 HXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255
H ++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWW
Sbjct: 192 HALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWW 251
Query: 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF 315
KDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT
Sbjct: 252 KDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTV 310
Query: 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQ 375
+EL +T+A++RWD N D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+
Sbjct: 311 KELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMK 370
Query: 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKV 435
EV+ Y E+ W EGY P V EY S AL + + T S+L M AT++ FEW+ K
Sbjct: 371 EVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKN 429
Query: 436 PKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495
PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +S +EA WK
Sbjct: 430 PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWK 489
Query: 496 DLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 552
D+N E P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 490 DIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 216/538 (40%), Positives = 327/538 (60%), Gaps = 8/538 (1%)
Query: 17 RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDA 76
RP+A F P+LWG FL S Q + +E +ALK++ R M+ + +++ L+LID
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKE-IEALKEQTRNMLLATGMKLADTLNLIDT 75
Query: 77 VQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLLRQ IS ++
Sbjct: 76 IERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDE 134
Query: 137 XXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQ 196
S+ ++V G+L+LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+
Sbjct: 135 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVT 193
Query: 197 HXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255
H ++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWW
Sbjct: 194 HALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWW 253
Query: 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF 315
KDLD T LPYARDR+VE YFWTL GVY EP+Y+ R+++ K I +IS++DDTFDAYGT
Sbjct: 254 KDLDFVTTLPYARDRVVECYFWTL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTV 312
Query: 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQ 375
+EL +T+A++RWD N D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+
Sbjct: 313 KELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMK 372
Query: 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKV 435
E++ Y E+ W EGY P V EY S AL + + T S+L M AT++ FEW+ K
Sbjct: 373 EIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKS-ATEQDFEWLSKN 431
Query: 436 PKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495
PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +S +EA WK
Sbjct: 432 PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWK 491
Query: 496 DLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 552
D+N E P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 492 DIN-EGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/521 (40%), Positives = 319/521 (61%), Gaps = 7/521 (1%)
Query: 17 RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDA 76
RP+A F P+LWG FL S D Q + QE +ALK++ R M+ + +++ L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQE-IEALKEQTRSMLLATGRKLADTLNLIDI 73
Query: 77 VQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
++RLG++Y FEKEI++ L ++ N S+ ++L T +L+FRLLRQ IS ++
Sbjct: 74 IERLGISYHFEKEIDEILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 137 XXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQ 196
S+ ++V G+L+LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVT 191
Query: 197 HXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255
H ++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWW
Sbjct: 192 HALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWW 251
Query: 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF 315
KDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT
Sbjct: 252 KDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTV 310
Query: 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQ 375
+EL +T+A++RWD N D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+
Sbjct: 311 KELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMK 370
Query: 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKV 435
EV+ Y E+ W EGY P V EY S AL + + T S+L M AT++ FEW+ K
Sbjct: 371 EVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKN 429
Query: 436 PKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495
PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +S +EA WK
Sbjct: 430 PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWK 489
Query: 496 DLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTN 536
D+N E P+LNLAR+ E Y +D YT+
Sbjct: 490 DIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 216/538 (40%), Positives = 326/538 (60%), Gaps = 8/538 (1%)
Query: 17 RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDA 76
RP+A F P+LWG FL S Q + +E +ALK++ R M+ + +++ L+LID
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKE-IEALKEQTRNMLLATGMKLADTLNLIDT 75
Query: 77 VQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLLRQ IS ++
Sbjct: 76 IERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDE 134
Query: 137 XXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQ 196
S+ ++V G+L+LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+
Sbjct: 135 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVT 193
Query: 197 HXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255
H ++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWW
Sbjct: 194 HALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWW 253
Query: 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF 315
KDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT
Sbjct: 254 KDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTV 312
Query: 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQ 375
+EL +T+A++RWD N D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+
Sbjct: 313 KELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMK 372
Query: 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKV 435
EV+ Y E+ W EGY P V EY S AL + + T S+L M AT++ FEW+ K
Sbjct: 373 EVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKN 431
Query: 436 PKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495
PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +S +EA WK
Sbjct: 432 PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWK 491
Query: 496 DLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 552
D+N E P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 492 DIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 216/538 (40%), Positives = 326/538 (60%), Gaps = 8/538 (1%)
Query: 17 RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDA 76
RP+A F P+LWG FL S Q + +E +ALK++ R M+ + +++ L+LID
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKE-IEALKEQTRNMLLATGMKLADTLNLIDT 60
Query: 77 VQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLLRQ IS ++
Sbjct: 61 IERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDE 119
Query: 137 XXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQ 196
S+ ++V G+L+LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+
Sbjct: 120 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVT 178
Query: 197 HXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255
H ++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWW
Sbjct: 179 HALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWW 238
Query: 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF 315
KDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT
Sbjct: 239 KDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTV 297
Query: 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQ 375
+EL +T+A++RWD N D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+
Sbjct: 298 KELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMK 357
Query: 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKV 435
EV+ Y E+ W EGY P V EY S AL + + T S+L M AT++ FEW+ K
Sbjct: 358 EVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKN 416
Query: 436 PKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495
PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +S +EA WK
Sbjct: 417 PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWK 476
Query: 496 DLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 552
D+N E P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 477 DIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 533
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/521 (40%), Positives = 318/521 (61%), Gaps = 7/521 (1%)
Query: 17 RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDA 76
RP+A F P+LWG FL S D Q + +E +ALK++ R M+ + +++ L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKE-IEALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 77 VQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLLRQ IS ++
Sbjct: 74 IERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 137 XXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQ 196
S+ ++V G+L+LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVT 191
Query: 197 HXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255
H ++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWW
Sbjct: 192 HALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWW 251
Query: 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF 315
KDLD T LPYARDR+VE YF L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT
Sbjct: 252 KDLDFVTTLPYARDRVVECYFSAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTV 310
Query: 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQ 375
+EL +T+A++RWD N D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+
Sbjct: 311 KELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMK 370
Query: 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKV 435
EV+ Y E+ W EGY P V EY S AL + + T S+L M AT++ FEW+ K
Sbjct: 371 EVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKN 429
Query: 436 PKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495
PKI+ AS ICR++DD A+++ E+ RG I + +EC M+ + +S +EA WK
Sbjct: 430 PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWK 489
Query: 496 DLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTN 536
D+N E P+LNLAR+ E Y +D YT+
Sbjct: 490 DIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/521 (40%), Positives = 318/521 (61%), Gaps = 7/521 (1%)
Query: 17 RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDA 76
RP+A F P+LWG FL S D Q + +E +ALK++ R M+ + +++ L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKE-IEALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 77 VQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLLRQ IS ++
Sbjct: 74 IERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 137 XXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQ 196
S+ ++V G+L+LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVT 191
Query: 197 HXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255
H ++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWW
Sbjct: 192 HALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWW 251
Query: 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF 315
KDLD T LPYARDR+VE YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT
Sbjct: 252 KDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTV 310
Query: 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQ 375
+EL +T+A++RWD N D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+
Sbjct: 311 KELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMK 370
Query: 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKV 435
EV+ Y E+ W EGY P V EY S AL + + T S+L M AT++ FEW+ K
Sbjct: 371 EVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKN 429
Query: 436 PKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495
PKI+ AS I R++DD A+++ E+ RG I + +EC M+ + +S +EA WK
Sbjct: 430 PKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWK 489
Query: 496 DLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTN 536
D+N E P+LNLAR+ E Y +D YT+
Sbjct: 490 DIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/521 (40%), Positives = 317/521 (60%), Gaps = 7/521 (1%)
Query: 17 RPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDA 76
RP+A F P+LWG FL S D Q + +E +ALK++ R M+ + +++ L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKE-IEALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 77 VQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
++RLG++Y FEKEI+D L ++ N S+ ++L T +L+FRLLRQ IS ++
Sbjct: 74 IERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDE 132
Query: 137 XXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQ 196
S+ ++V G+L+LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+
Sbjct: 133 NGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVT 191
Query: 197 HXXXXXXXXXXXXXXXXYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255
H ++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWW
Sbjct: 192 HALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWW 251
Query: 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTF 315
KDLD T LPYARDR+VE YF L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT
Sbjct: 252 KDLDFVTTLPYARDRVVECYFSAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTV 310
Query: 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQ 375
+EL +T+A++RWD N D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+
Sbjct: 311 KELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMK 370
Query: 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKV 435
EV+ Y E+ W EGY P V EY S AL + + T S+L M AT++ FEW+ K
Sbjct: 371 EVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKN 429
Query: 436 PKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495
PKI+ AS I R++DD A+++ E+ RG I + +EC M+ + +S +EA WK
Sbjct: 430 PKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWK 489
Query: 496 DLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTN 536
D+N E P+LNLAR+ E Y +D YT+
Sbjct: 490 DIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 291 bits (746), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 183/545 (33%), Positives = 295/545 (54%), Gaps = 12/545 (2%)
Query: 14 GEARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHL 73
EAR A + PN W + FL SS ++I+ +++ L+ EVRR I + E L L
Sbjct: 12 SEARRSADYEPNSWDYDFLLSSDTDESIEVY-KDKAKKLEAEVRREINNEKAEFLTLLEL 70
Query: 74 IDAVQRLGVAYQFEKEIEDELQKLANDLGSDS---DNLYTVSLRFRLLRQQRVKISCDVX 130
ID VQRLG+ Y+FE +I L + + G D +L+ +L FRLLRQ ++S +
Sbjct: 71 IDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAF 130
Query: 131 XXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNN 190
++ + + +LSLYEA+ LA+ GE ILDEA VF +HLK + I
Sbjct: 131 SGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKE 190
Query: 191 LAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSD 250
LAEQ+ H + + Y + + ++ LL+ A LD+N++Q+ +Q++L +
Sbjct: 191 LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRE 250
Query: 251 MTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFD 310
+RWW+ + + TKL +ARDR++E ++W VGV EP+Y+ R V+K+ +++IDD +D
Sbjct: 251 TSRWWRRVGLATKLHFARDRLIESFYWA-VGVAFEPQYSDCRNSVAKMFSFVTIIDDIYD 309
Query: 311 AYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNE-AEEELAKQGRSYGIPY 369
YGT +EL LFT+AV+RWD N + LP MK + L NE A + L +G + +PY
Sbjct: 310 VYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENI-LPY 368
Query: 370 AKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIA-VLPVVTASFLDMGDIATKEV 428
+ ++ + EAKWL P+ ++Y A +S + L ++ A F + +I +E+
Sbjct: 369 LTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEI 428
Query: 429 FEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWL 488
E + K II+ +I RL +D+AS E RG ++V CYM+ +SEE A +++
Sbjct: 429 -ENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMN 487
Query: 489 EIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYKM-KDQVALV 547
I WK +N E+ + NLAR S Y +G D +T+ ++ + +V V
Sbjct: 488 LIDETWKKMNKEKLGGSLFAKPFVETAI-NLARQSHCTYHNG-DAHTSPDELTRKRVLSV 545
Query: 548 LKDPV 552
+ +P+
Sbjct: 546 ITEPI 550
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 275 bits (704), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 173/527 (32%), Positives = 270/527 (51%), Gaps = 7/527 (1%)
Query: 20 AGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQR 79
G+ P LW ++S FD + + + + +V+ M+ VD I +L LID ++R
Sbjct: 38 GGYQPTLWDFSTIQS-FDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSI-RRLELIDDLRR 95
Query: 80 LGVAYQFEKEIEDELQ-KLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXX-XXXXXX 137
LG++ FE+EI + L K + D +LY+ +LRFRLLRQ +S +V
Sbjct: 96 LGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKG 155
Query: 138 XXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQH 197
S++++ RG+L LYEA+ L+ GE L A F T L+ + NL I+
Sbjct: 156 TDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIER 215
Query: 198 XXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKD 257
+++ Y R + T+L+ AKLDFN++QA Q+EL + +RWW
Sbjct: 216 ALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNS 275
Query: 258 LDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEE 317
+ +LP+ RDR+VE Y+WT GV ++ + RI+++KI L++ IDD FD YGT EE
Sbjct: 276 TGLVHELPFVRDRIVECYYWT-TGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEE 334
Query: 318 LTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEV 377
L LFT A++RWD LP M+ Y L NE + + PY ++ +
Sbjct: 335 LQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGL 394
Query: 378 ILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPK 437
I Y EAKW +G+ PS+EEY + SI +P+++ F + D +E E + K
Sbjct: 395 IESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHD 454
Query: 438 IITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDL 497
I+ AS I RL DD+ + E +RG +P +V+CYM + SEEEA + + I WK +
Sbjct: 455 IVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMM 514
Query: 498 NYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYKMKDQV 544
N E NLARM+++IY+ D + + + +++
Sbjct: 515 NKEMMTSSFSKYFVEVSA--NLARMAQWIYQHESDGFGMQHSLVNKM 559
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 260 bits (664), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 169/553 (30%), Positives = 284/553 (51%), Gaps = 25/553 (4%)
Query: 15 EARPIAGFHPNLWGHHFLKSSFDFQTIDTT-TQEQYDALKQE----VRRMITSAVDEISH 69
+ R + P LW +++ Q+++T T+E++ K E VR ++ ++ +
Sbjct: 4 QIRRSGNYQPALWDSNYI------QSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQ- 56
Query: 70 KLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDN------LYTVSLRFRLLRQQRV 123
+L LI ++ LG++ F+ EI++ L + N+ +N LY +L FRLLRQ
Sbjct: 57 QLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGF 116
Query: 124 KISCDVXXXXXXXXXX-XXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSM 182
IS DV AS+ + +GML LYEA+ L GE L+ A F T L+
Sbjct: 117 NISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKK 176
Query: 183 I---SRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNL 239
+ I NL I+H ++++ Y+R + + + AKL+FN+
Sbjct: 177 LDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNI 236
Query: 240 LQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKII 299
+QA HQ+EL D++RWW L P KLP+ RDR+VE +FW VG++ ++ + R + + II
Sbjct: 237 IQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPHQHGYQRKMAATII 295
Query: 300 CLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELA 359
L ++IDD +D YGT +EL LFT+ KRWDT LP M+ Y + ++A ++
Sbjct: 296 VLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDIL 355
Query: 360 KQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD 419
K+ + + Y ++++ +++ YF EAKW GY PS++EY ++A S+A +++ ++
Sbjct: 356 KEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFT 415
Query: 420 MGDIA-TKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVS 478
+ + V + + + I+ + I RL DD+ + FE RG +P ++CYMK+ S
Sbjct: 416 FANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNAS 475
Query: 479 EEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSY 538
EEEA + + I WKD+N G N+ R+++FIY G
Sbjct: 476 EEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAA-NIGRVAQFIYLHGDGFGVQHS 534
Query: 539 KMKDQVALVLKDP 551
K + +A +L +P
Sbjct: 535 KTYEHIAGLLFEP 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/544 (29%), Positives = 270/544 (49%), Gaps = 13/544 (2%)
Query: 17 RPIAGFHPNLWGHHFLKSSF-DFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLID 75
R ++P+ W +F++S D++ + L V+ + D+I +L LID
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRAS--ELVTLVKMELEKETDQI-RQLELID 58
Query: 76 AVQRLGVAYQFEKEIEDELQKL-------ANDLGSDSDNLYTVSLRFRLLRQQRVKISCD 128
+QR+G++ F+ E ++ L + N + +LY+ SL FRLLR+ +++ +
Sbjct: 59 DLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQE 118
Query: 129 VXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRV-I 187
V S+ ++ RG+L LYEA+ L GE L+ A F T L+ ++ +
Sbjct: 119 VFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGV 178
Query: 188 SNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKE 247
+L +I + ++ Y + + +L+ A LD N++QA Q+E
Sbjct: 179 DGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEE 238
Query: 248 LSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDD 307
L + RWW++ KLP+ARDR+VE YFW G+ ++ RI++ K+ LI++IDD
Sbjct: 239 LKESFRWWRNTGFVEKLPFARDRLVECYFWN-TGIIEPRQHASARIMMGKVNALITVIDD 297
Query: 308 TFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGI 367
+D YGT EEL FT+ ++RWD N D LP M+ + L ++ ++ K+ I
Sbjct: 298 IYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVI 357
Query: 368 PYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKE 427
PY +Q+ ++ Y EA+W G+ PS+EEY + +SI+ ++T F + D TKE
Sbjct: 358 PYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKE 417
Query: 428 VFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALW 487
+ + K ++ S + RL DD+ + E RG +P +++CYM + SE EA K +
Sbjct: 418 TVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVK 477
Query: 488 LEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALV 547
IA WK +N E G ++L RM++ +Y +G T + Q+
Sbjct: 478 WLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRT 537
Query: 548 LKDP 551
L +P
Sbjct: 538 LFEP 541
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 225 bits (573), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 163/523 (31%), Positives = 263/523 (50%), Gaps = 40/523 (7%)
Query: 66 EISHKLHLIDAVQRLGVAYQFEKEIEDELQKLA---NDLG------SDSDNLYTVSLRFR 116
++ +L ++D + RLG+ FEKEI++ L + N+ G + +L T +L FR
Sbjct: 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFR 356
Query: 117 LLRQQRVKISCDVXXXXXXXXXXXXAS---MINNVRGMLSLYEAAHLAVHGEVILDEAIV 173
LLR R +S + S +V ML+LY A+ LA GE ILDEA
Sbjct: 357 LLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKS 416
Query: 174 FTTTHL-----KSMISRVISN--NLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDD--- 223
F T +L KS S +N NL+++I++ Y +Y D
Sbjct: 417 FATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARI 476
Query: 224 ---------LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEV 274
+++E L+ KLDFN++Q+ HQ+E+ ++T W++D +P +AR+R +E
Sbjct: 477 AKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPL-FTFARERPLEF 535
Query: 275 YFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTD 334
YF G Y EP+Y R L +K+ CL +++DD +D YGT +EL LFTEAV+RWD + T+
Sbjct: 536 YFLVAAGTY-EPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTE 594
Query: 335 TLPACMKFIYNKLLGVYNEAEEELAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYV 393
LP MK Y + +E E K QGR + + ++ ++ +L Y+ EA+WL YV
Sbjct: 595 NLPDYMKLCYQIYYDIVHEVAWEAEKEQGREL-VSFFRKGWEDYLLGYYEEAEWLAAEYV 653
Query: 394 PSVEEYKSVALRSIAVLPVVTASFLDM-GDIATKEVFEWVLKVPKIITASEN--ICRLLD 450
P+++EY + SI ++ + L M G + ++E E V + + N I RL D
Sbjct: 654 PTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLAD 713
Query: 451 DVASHKFEQKRGHIPSAVECYMKQHV-VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXX 509
D ++K E+ RG + S++ECYMK H +EEEA ++ + K+L E
Sbjct: 714 DTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELT-REFLKPDDVP 772
Query: 510 XXXXGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPV 552
+ R++ I++DG + ++KD + L +P+
Sbjct: 773 FACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPL 815
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 9 VSSSIGEARPIAGFHPNLWGH---HFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAV 64
+SS+ G R A HPN+WG+ H LKS + ID++ +E+ + L E++ M+ A+
Sbjct: 17 LSSTSGLIRRTANPHPNVWGYDLVHSLKSPY----IDSSYRERAEVLVSEIKAMLNPAI 71
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/522 (28%), Positives = 252/522 (48%), Gaps = 41/522 (7%)
Query: 66 EISHKLHLIDAVQRLGVAYQFEKEIEDELQKL-----ANDLGSDSDN----LYTVSLRFR 116
++ +L +D V+RLG+ F++EI++ L + +G +N + ++ R
Sbjct: 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLR 328
Query: 117 LLRQQRVKISCDVXXXXXXXXXXXXASMINNVRG---MLSLYEAAHLAVHGEVILDEAIV 173
+LR +S DV + RG ML++ +H++ GE I++EA +
Sbjct: 329 ILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKL 388
Query: 174 FTTTHLKSMISRV-------ISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDD--- 223
T +L++ + V N+ ++++ Y+ Y DD
Sbjct: 389 CTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWL 448
Query: 224 ---------LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEV 274
+ +E L+ AKLDFN +Q+ HQ EL D+ RWWK T L + R+R+ E+
Sbjct: 449 GKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEI 507
Query: 275 YFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTD 334
YF ++ EP+++ R + +K ++DD +DA+G+ ++L LFTE+VKRWD ++ D
Sbjct: 508 YFSPASFIF-EPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVD 566
Query: 335 TLPACMKFIYNKLLGVYNE-AEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYV 393
+P MK + +N+ A+E +QGR + Y + + + Y EA+W + YV
Sbjct: 567 QMPQQMKICFVGFYNTFNDIAKEGRERQGRDV-LGYIQNVWKVQLEAYTKEAEWSEAKYV 625
Query: 394 PSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVA 453
PS EY A SIA+ VV S L G++ T EV + + + + RL++D
Sbjct: 626 PSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTK 685
Query: 454 SHKFEQKRGHIPSAVECYMKQHV-VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 512
+++ E+ +G + SA++CYMK H +SEEEA + ++ + N ++LN E
Sbjct: 686 TYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKIPDIYKR 745
Query: 513 XGPVLNLARMSEFIYEDGVDRYTNSYKM--KDQVALVLKDPV 552
V AR+ + Y G D T S+ M K+ V L PV
Sbjct: 746 L--VFETARIMQLFYMQG-DGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/516 (27%), Positives = 240/516 (46%), Gaps = 35/516 (6%)
Query: 66 EISHKLHLIDAVQRLGVAYQFEKEIEDEL-------QKLANDLGSDS--DNLYTVSLRFR 116
++ +L L+D ++ LG+ F++EI+ L + G DS +L T +L R
Sbjct: 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLR 304
Query: 117 LLRQQRVKISCDVXXXXXXXXXXXXASMINN---VRGMLSLYEAAHLAVHGEVILDEAIV 173
LR +S DV +S +R +++L+ A+ LA E +D+A
Sbjct: 305 TLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARK 364
Query: 174 FTTTHLKSMISRVISNN--LAEQIQHXXXXXXXXXXXXXXXXYYLN------------MY 219
F +L+ ++ IS N L ++I++ Y++ +Y
Sbjct: 365 FAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLY 424
Query: 220 SRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTL 279
L + L+ AKLDFN++Q+ HQ+EL +TRWWK+ + + + R R+ EVYF +
Sbjct: 425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSSA 483
Query: 280 VGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPAC 339
EP+Y+ RI +KI CL L DD D + T +EL FTE VKRWDT++ +P C
Sbjct: 484 T---FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPEC 540
Query: 340 MKFIYNKLLGVYNEAEEELAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEE 398
M+ + + E ++ K QGR + + ++ + Y E +WL+ GY+P+ EE
Sbjct: 541 MQTCFKVWFKLMEEVNNDVVKVQGRDM-LAHIRKPWELYFNCYVQEREWLEAGYIPTFEE 599
Query: 399 YKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFE 458
Y S+ + P L MG++ +V E V + RL +D +++ E
Sbjct: 600 YLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAE 659
Query: 459 QKRGHIPSAVECYMKQHV-VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVL 517
+ RG S + CYMK + +EE+A K + + K+ ++E +
Sbjct: 660 KARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIF 719
Query: 518 NLARMSEFIYEDGVDRY-TNSYKMKDQVALVLKDPV 552
NL R+ I+ +D Y + ++KD + V DP+
Sbjct: 720 NL-RLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 39/311 (12%)
Query: 31 FLKSSFDFQTIDTTTQEQYDALKQEVRRMITSA-----VDEISHKLHLIDAVQRLGVAYQ 85
F SS F + T + L+ V+R VD H + ++D +QRLG++
Sbjct: 205 FSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVDLFEH-IWIVDRLQRLGISRY 263
Query: 86 FEKEIE---DELQKLANDLG------SDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXX 136
FE+EI+ D + + D G S ++ ++ FRLLRQ ++S DV
Sbjct: 264 FEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKE 323
Query: 137 XXXXXASMINN--VRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR-------VI 187
+N V GM +LY A+ LA E IL A F+ +L R +I
Sbjct: 324 GEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWII 383
Query: 188 SNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDD-------------LHDETLLKFAK 234
+L +I +Y++ Y ++ +++ L+ AK
Sbjct: 384 MKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAK 443
Query: 235 LDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRIL 294
D+N QA HQ E +W+++ + ++ R ++E Y+ ++ E + + R++
Sbjct: 444 QDYNNCQAQHQLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIF-ESERSHERMV 501
Query: 295 VSKIICLISLI 305
+K L+ I
Sbjct: 502 WAKSSVLVKAI 512
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 308 TFDAYGTFEELTLFTEAVKRWDTNVTDTLPACM--KFIYNKLLGVYNEAEEELAKQGRSY 365
T D Y FE++TL + + + + LPA + F +LL + + EE+ +Y
Sbjct: 38 TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID----TY 93
Query: 366 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIAT 425
YA T+Q+ + M F ++L P V +++V L ++ VL S L G
Sbjct: 94 AFAYA-HTIQK-LYMGFNAIRYLP----PHV--FQNVPLLTVLVLERNDLSSLPRG---- 141
Query: 426 KEVFEWVLKVPKIITASENICRLLDDV 452
+F K+ + ++ N+ R+ DD
Sbjct: 142 --IFHNTPKLTTLSMSNNNLERIEDDT 166
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 308 TFDAYGTFEELTLFTEAVKRWDTNVTDTLPACM--KFIYNKLLGVYNEAEEELAKQGRSY 365
T D Y FE++TL + + + + LPA + F +LL + + EE+ +Y
Sbjct: 32 TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID----TY 87
Query: 366 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIAT 425
YA T+Q+ + M F ++L P V +++V L ++ VL S L G
Sbjct: 88 AFAYA-HTIQK-LYMGFNAIRYLP----PHV--FQNVPLLTVLVLERNDLSSLPRG---- 135
Query: 426 KEVFEWVLKVPKIITASENICRLLDD 451
+F K+ + ++ N+ R+ DD
Sbjct: 136 --IFHNTPKLTTLSMSNNNLERIEDD 159
>pdb|4AE4|A Chain A, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
pdb|4AE4|B Chain B, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
Length = 118
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 429 FEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWL 488
+E VL+ K A NI ++LD + +H ++G P VE ++ H SEE+ + +L
Sbjct: 22 YECVLRAXK--AAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEXHQCSEEKXXE--FL 77
Query: 489 EIANGWKDLNYE 500
++ + +K+ +E
Sbjct: 78 QLXSKFKEXGFE 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,618,452
Number of Sequences: 62578
Number of extensions: 546870
Number of successful extensions: 1592
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 27
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)