Query 008767
Match_columns 554
No_of_seqs 232 out of 910
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 4E-168 1E-172 1371.4 49.2 533 16-554 21-554 (554)
2 3m00_A Aristolochene synthase; 100.0 2E-167 6E-172 1365.0 49.0 546 2-554 2-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 4E-166 1E-170 1356.9 45.8 532 16-553 14-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 4E-160 1E-164 1316.5 50.7 533 16-553 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 7E-160 2E-164 1313.9 45.5 533 16-553 5-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 2E-159 8E-164 1313.6 43.5 533 16-553 34-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 9E-143 3E-147 1217.8 45.5 487 64-554 295-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 3E-142 1E-146 1206.2 48.3 484 64-554 243-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 3E-142 1E-146 1208.9 47.3 484 64-553 267-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 3E-107 9E-112 912.4 35.2 449 46-553 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.9E-50 6.4E-55 420.3 18.1 251 241-502 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 4.4E-49 1.5E-53 403.1 19.5 242 243-502 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 2E-47 6.9E-52 394.7 19.5 244 241-502 25-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 1.5E-45 5.3E-50 390.7 17.2 242 251-501 66-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 1.2E-32 4E-37 295.3 19.0 245 247-501 130-389 (433)
16 1yyq_A Trichodiene synthase; t 99.7 2.6E-17 8.8E-22 173.2 16.5 248 249-522 33-294 (374)
17 3sdr_A Alpha-bisabolene syntha 97.2 0.00011 3.7E-09 84.2 2.4 45 16-61 24-68 (817)
18 4hd1_A Squalene synthase HPNC; 90.3 15 0.00053 36.4 18.3 187 291-513 40-239 (294)
19 3acx_A Dehydrosqualene synthas 89.4 13 0.00046 36.8 17.0 196 290-514 38-245 (293)
20 3ipi_A Geranyltranstransferase 85.3 4.5 0.00015 40.6 10.6 142 365-522 127-278 (295)
21 3lmd_A Geranylgeranyl pyrophos 83.3 7.9 0.00027 40.0 11.6 103 365-475 160-275 (360)
22 3oyr_A Trans-isoprenyl diphosp 80.0 34 0.0012 34.9 15.0 89 363-457 149-239 (345)
23 3mzv_A Decaprenyl diphosphate 77.3 50 0.0017 33.6 15.2 90 362-457 136-227 (341)
24 3rmg_A Octaprenyl-diphosphate 76.8 33 0.0011 34.8 13.7 91 362-458 130-222 (334)
25 3ts7_A Geranyltranstransferase 74.8 31 0.001 35.0 12.7 111 375-498 158-281 (324)
26 1rtr_A Geranyltranstransferase 72.9 17 0.00059 36.4 10.2 109 375-498 148-270 (301)
27 3lsn_A Geranyltranstransferase 69.1 37 0.0013 34.0 11.7 123 377-521 154-289 (304)
28 3m0g_A Farnesyl diphosphate sy 68.7 27 0.00092 34.9 10.5 108 375-498 147-268 (297)
29 3p8r_A Geranyltranstransferase 67.8 22 0.00076 35.6 9.7 111 375-498 158-281 (302)
30 3lom_A Geranyltranstransferase 67.7 43 0.0015 33.7 11.9 113 375-498 158-282 (313)
31 2h8o_A Geranyltranstransferase 65.8 36 0.0012 34.6 11.0 110 375-498 192-314 (335)
32 2ftz_A Geranyltranstransferase 65.3 47 0.0016 32.9 11.5 120 365-498 134-263 (284)
33 1wy0_A Geranylgeranyl pyrophos 63.4 51 0.0018 33.4 11.6 85 366-457 138-225 (342)
34 3p8l_A Geranyltranstransferase 63.3 40 0.0014 33.7 10.6 109 376-498 157-278 (302)
35 4f62_A Geranyltranstransferase 62.8 44 0.0015 33.7 10.8 110 376-498 152-274 (317)
36 3pko_A Geranylgeranyl pyrophos 62.6 78 0.0027 32.0 12.8 103 365-474 143-258 (334)
37 3nf2_A Putative polyprenyl syn 59.2 1.3E+02 0.0045 30.5 13.8 85 366-456 144-230 (352)
38 4dhd_A Polyprenyl synthetase; 56.4 79 0.0027 32.3 11.6 85 366-456 133-231 (358)
39 3apz_A Geranyl diphosphate syn 54.4 1.1E+02 0.0037 31.0 12.2 87 365-457 153-241 (348)
40 3npk_A Geranyltranstransferase 49.4 1.2E+02 0.0041 30.0 11.3 127 374-521 144-280 (291)
41 3llw_A Geranyltranstransferase 47.3 50 0.0017 33.1 8.2 111 375-498 159-280 (311)
42 3uca_A Geranyltranstransferase 46.9 89 0.003 31.5 10.0 111 375-498 180-303 (324)
43 3pde_A Farnesyl-diphosphate sy 46.3 80 0.0028 31.6 9.5 109 376-498 156-277 (309)
44 3s9v_A Abietadiene synthase, c 44.6 9.7 0.00033 43.4 2.6 42 20-61 4-45 (785)
45 2j1p_A Geranylgeranyl pyrophos 41.9 42 0.0014 33.3 6.6 108 376-498 161-271 (293)
46 1rqj_A Geranyltranstransferase 41.7 1E+02 0.0034 30.6 9.4 110 375-498 152-275 (299)
47 1pd3_A Nonstructural protein N 40.3 21 0.0007 26.2 2.8 33 47-80 16-48 (58)
48 1wmw_A Geranylgeranyl diphosph 38.9 87 0.003 31.5 8.5 85 365-456 130-218 (330)
49 2qis_A Farnesyl pyrophosphate 35.4 1.7E+02 0.0057 30.0 10.1 89 365-457 176-271 (374)
50 1uby_A FPS, farnesyl diphospha 35.2 1.5E+02 0.0052 30.2 9.7 89 365-457 169-264 (367)
51 2azj_A Geranylgeranyl pyrophos 35.1 1.6E+02 0.0055 29.0 9.6 115 366-498 136-257 (289)
52 2her_A Fragment, farnesyl pyro 28.4 3.8E+02 0.013 27.3 11.4 89 365-456 168-260 (368)
53 1qjt_A EH1, epidermal growth f 27.9 1.2E+02 0.004 24.5 6.0 64 65-131 25-89 (99)
54 2q80_A Geranylgeranyl pyrophos 27.7 2.5E+02 0.0086 27.7 9.6 86 363-457 109-196 (301)
55 1v4e_A Octoprenyl-diphosphate 26.8 2.5E+02 0.0086 27.7 9.4 86 363-458 125-212 (299)
56 1yhl_A Farnesyl pyrophosphate 26.7 1.5E+02 0.0051 30.1 8.0 106 365-475 151-284 (362)
57 2e8v_A Geranylgeranyl pyrophos 26.5 1.1E+02 0.0039 30.8 6.9 86 366-457 132-221 (340)
58 3aqb_B Component B of hexapren 25.5 1.7E+02 0.0058 29.2 8.0 87 365-457 130-218 (325)
59 1c07_A Protein (epidermal grow 22.6 1.9E+02 0.0066 22.6 6.4 59 65-128 24-86 (95)
60 3kra_B Geranyl diphosphate syn 22.5 1E+02 0.0035 30.2 5.5 92 377-498 151-244 (274)
61 1fi6_A EH domain protein REPS1 21.9 1E+02 0.0035 24.1 4.5 72 53-128 8-84 (92)
62 3mav_A Farnesyl pyrophosphate 21.8 4.8E+02 0.017 26.6 10.8 88 366-456 179-292 (395)
63 3fau_A NEDD4-binding protein 2 21.8 71 0.0024 25.1 3.4 23 475-497 6-28 (82)
64 3vj8_A Squalene synthase; farn 21.4 6.2E+02 0.021 25.3 19.5 246 264-535 13-284 (343)
65 3lk5_A Geranylgeranyl pyrophos 20.9 6.7E+02 0.023 25.5 14.3 77 374-456 184-263 (380)
66 2ee7_A Sperm flagellar protein 20.1 88 0.003 27.2 3.9 67 243-310 12-85 (127)
67 3tc1_A Octaprenyl pyrophosphat 20.1 6.4E+02 0.022 24.9 13.7 83 365-457 122-207 (315)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=3.8e-168 Score=1371.38 Aligned_cols=533 Identities=47% Similarity=0.848 Sum_probs=497.4
Q ss_pred CCCCCCCCCCCCccccccccCCccccchhhHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHH
Q 008767 16 ARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQ 95 (554)
Q Consensus 16 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~ 95 (554)
.||+||||||+|||+||++ ++ .+..+.+.+|+++||++||+||.+...|++++|+|||+||||||+|||++||+++|+
T Consensus 21 ~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~ 98 (554)
T 3g4d_A 21 MRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELE 98 (554)
T ss_dssp ----CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHH
T ss_pred CCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHH
Confidence 7999999999999999998 43 344667889999999999999975346899999999999999999999999999999
Q ss_pred HHHhccCCCCCChhhHHHHHHHhhhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHHHHHHHH
Q 008767 96 KLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFT 175 (554)
Q Consensus 96 ~i~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~~lL~LyeAs~l~~~gE~iLdea~~ft 175 (554)
+||+.......||++|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||||+.||
T Consensus 99 ~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs 178 (554)
T 3g4d_A 99 NIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFT 178 (554)
T ss_dssp HHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 99975112237999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhcCCccHHHHHHHHccCcccccchhHHHHHhHHhhcCCCcCcHHHHHHHhhchHHHHHhhHHHHHHHHHHH
Q 008767 176 TTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWW 255 (554)
Q Consensus 176 ~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw 255 (554)
++||++.+.++ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++++|||
T Consensus 179 ~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWw 257 (554)
T 3g4d_A 179 THHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWW 257 (554)
T ss_dssp HHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999988765 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhhcCCCCcCC
Q 008767 256 KDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDT 335 (554)
Q Consensus 256 k~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~ 335 (554)
|++||.++|||||||++|||||++ |++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||++++++
T Consensus 258 k~~~l~~~L~faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~ 336 (554)
T 3g4d_A 258 KDLDFQRKLPYARDRVVEGYFWIS-GVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDE 336 (554)
T ss_dssp HHHCHHHHCTTCCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGG
T ss_pred HHcCCcccCCchHHHHHHHHHHHH-HhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCcccccc
Confidence 999997789999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHH
Q 008767 336 LPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA 415 (554)
Q Consensus 336 lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~ 415 (554)
||+|||+||.+|+++++|++.++.++||+++++|++++|+++++||++||+|+++||+||+||||+||++|+|+++++++
T Consensus 337 LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~ 416 (554)
T 3g4d_A 337 IPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAIT 416 (554)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHH
Confidence 99999999999999999999888899998999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008767 416 SFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWK 495 (554)
Q Consensus 416 ~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk 495 (554)
+++|||+.+|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||+++|+++|+++||
T Consensus 417 ~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK 496 (554)
T 3g4d_A 417 SFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWK 496 (554)
T ss_dssp HHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHhhccCCCChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCccCC
Q 008767 496 DLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 554 (554)
Q Consensus 496 ~ln~~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~pi~~ 554 (554)
+|| ++|++++++|++|+++++|+||++++||+++ ||||.|+. ||++|++||++|||+
T Consensus 497 ~lN-~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 497 DLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHH-HHHSSSCSSCHHHHHHHHHHHHHHHHHSCC------CCCHHHHHHHHHHHTCCCCC
T ss_pred HHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCCCCC
Confidence 999 9999988999999999999999999999999 99999965 999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.9e-167 Score=1364.95 Aligned_cols=546 Identities=43% Similarity=0.778 Sum_probs=507.3
Q ss_pred CCCcccccccCcCC-CCCCCCCCCCCCccccccccCCccccchhhHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHh
Q 008767 2 STPVPAAVSSSIGE-ARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRL 80 (554)
Q Consensus 2 ~~~~~~~~~~~~~~-~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrL 80 (554)
++++++ ++....+ .||+||||||+|||+||+++++ .+..+.+.+|+++||++||+||.+...+++++|+|||+||||
T Consensus 2 ~~~~~~-~~~~~~~~~R~~~~~~ps~W~d~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrL 79 (550)
T 3m00_A 2 SMASAA-VANYEEEIVRPVADFSPSLWGDQFLSFSIK-NQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERL 79 (550)
T ss_dssp ---------------CCCCCCCCCCTTTTTTSCCCCC-HHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHT
T ss_pred Cccccc-ccccccccCCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHc
Confidence 344554 2333333 7999999999999999998754 344567789999999999999975346899999999999999
Q ss_pred CcccccHHHHHHHHHHHHhccCCCCCChhhHHHHHHHhhhcCcccchhhhhccccccccccccccccchhhhhHHHhhcc
Q 008767 81 GVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHL 160 (554)
Q Consensus 81 Gi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~~lL~LyeAs~l 160 (554)
||+|||++||+++|++||++ +....||++|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+
T Consensus 80 Gi~~hF~~EI~~~L~~i~~~-~~~~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l 158 (550)
T 3m00_A 80 GISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 158 (550)
T ss_dssp TCGGGCHHHHHHHHHHHHHH-CCCCSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTT
T ss_pred CchhhhHHHHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhc
Confidence 99999999999999999986 33257999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHhHhhhcCCccHHHHHHHHccCcccccchhHHHHHhHH-hhcCCCcCcHHHHHHHhhchHH
Q 008767 161 AVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLN-MYSRDDLHDETLLKFAKLDFNL 239 (554)
Q Consensus 161 ~~~gE~iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~-~y~~~~~~n~~lLelAkldFn~ 239 (554)
++|||+|||||+.||++||++.+.++ +++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||||||+
T Consensus 159 ~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~ 237 (550)
T 3m00_A 159 RTHADDILEDALAFSTIHLESAAPHL-KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL 237 (550)
T ss_dssp CCTTCGGGTTHHHHHHHHHHHHGGGC-CTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhcc-CccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 99999999999999999999988765 778999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHH
Q 008767 240 LQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELT 319 (554)
Q Consensus 240 ~Q~~hq~El~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~ 319 (554)
||++||+||++++||||++||.++|||||||++|||||++ |++|||+||.+|+++||+++|++++||+||+|||+|||+
T Consensus 238 ~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~ 316 (550)
T 3m00_A 238 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE 316 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHH-HhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHH
Confidence 9999999999999999999997799999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHh
Q 008767 320 LFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEY 399 (554)
Q Consensus 320 ~ft~ai~rWd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEY 399 (554)
.||+||+|||++++++||+|||+||.+|+++++|++.++.++||+++++|++++|+++++||++||+|+++||+||+|||
T Consensus 317 ~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEY 396 (550)
T 3m00_A 317 AYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEY 396 (550)
T ss_dssp HHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999988889999899999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcCCCCH
Q 008767 400 KSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSE 479 (554)
Q Consensus 400 l~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~ 479 (554)
|+||++|+|++++++++++|+ +.+|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+
T Consensus 397 l~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSe 475 (550)
T 3m00_A 397 LSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIST 475 (550)
T ss_dssp HHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCH
T ss_pred HHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCH
Confidence 999999999999999998887 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCccCC
Q 008767 480 EEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 554 (554)
Q Consensus 480 EeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~pi~~ 554 (554)
|+|+++|++||+++||+|| +++++++++|++|+++++|+||+++++|+++.||||.|+. ||++|++||++|||+
T Consensus 476 EeA~~~i~~~Ie~~wK~lN-~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 476 KEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999 9999988999999999999999999999984499999985 999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=4.3e-166 Score=1356.93 Aligned_cols=532 Identities=36% Similarity=0.616 Sum_probs=501.7
Q ss_pred CCCCCCCCCCCCccccccccCCccccchhhHHHHHHHHHHHHHHHhhchh-chhhhhhHHHHHHHhCcccccHHHHHHHH
Q 008767 16 ARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVD-EISHKLHLIDAVQRLGVAYQFEKEIEDEL 94 (554)
Q Consensus 16 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~-~~~~~l~liD~lqrLGi~~hF~~EI~~~L 94 (554)
.||+||||||+|||+||+++++ .+..+.+.+|+++||++||+||.+ .. +++++|+|||+||||||+|||++||+++|
T Consensus 14 ~~~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~-~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L 91 (555)
T 3n0f_A 14 ARRSADYEPNSWDYDFLLSSDT-DESIEVYKDKAKKLEAEVRREINN-EKAEFLTLLELIDNVQRLGLGYRFESDIRRAL 91 (555)
T ss_dssp ---CCCCCCCTTCHHHHTCC------CHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHH
T ss_pred cCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence 7999999999999999998654 344677889999999999999975 45 89999999999999999999999999999
Q ss_pred HHHHhcc---CCCCCChhhHHHHHHHhhhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHHHH
Q 008767 95 QKLANDL---GSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEA 171 (554)
Q Consensus 95 ~~i~~~~---~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~~lL~LyeAs~l~~~gE~iLdea 171 (554)
++||+.+ .....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||
T Consensus 92 ~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA 171 (555)
T 3n0f_A 92 DRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEA 171 (555)
T ss_dssp HHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred HHHHhhccccccccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHHH
Confidence 9999730 1124799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhh-hcCCccHHHHHHHHccCcccccchhHHHHHhHHhhcCCCcCcHHHHHHHhhchHHHHHhhHHHHHH
Q 008767 172 IVFTTTHLKSMIS-RVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSD 250 (554)
Q Consensus 172 ~~ft~~~L~~~~~-~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~ 250 (554)
+.||++||++.+. .. +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++
T Consensus 172 ~~Fs~~~L~~~~~~~~-~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~ 250 (555)
T 3n0f_A 172 RVFAISHLKELSEEKI-GKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRE 250 (555)
T ss_dssp HHHHHHHHHTCCHHHH-CHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-CchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 9999999999765 34 778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhhcCC
Q 008767 251 MTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDT 330 (554)
Q Consensus 251 lsrWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~ 330 (554)
++||||++||.++|||||||++|||||++ |++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||+
T Consensus 251 lsrWwk~~~l~~~l~faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~ 329 (555)
T 3n0f_A 251 TSRWWRRVGLATKLHFARDRLIESFYWAV-GVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDV 329 (555)
T ss_dssp HHHHHHHHCHHHHCTTCCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHcCCcccCCchhhHHHHHHHHHH-HhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCc
Confidence 99999999997799999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchH
Q 008767 331 NVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVL 410 (554)
Q Consensus 331 ~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~ 410 (554)
+++++||+|||+||.+|+++++|++.++.+.+|.++++|++++|+++++||++||+|+++||+||+||||+||++|+|++
T Consensus 330 ~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~ 409 (555)
T 3n0f_A 330 NAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGP 409 (555)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHH
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHH
Confidence 99999999999999999999999988766666669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcCCCCHHHHHHHHHHHH
Q 008767 411 PVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEI 490 (554)
Q Consensus 411 ~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i 490 (554)
+++++++++||+.+|+++++|+.++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++|+++|
T Consensus 410 ~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~I 489 (555)
T 3n0f_A 410 LQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLI 489 (555)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHhhccCCCChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCccC
Q 008767 491 ANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVT 553 (554)
Q Consensus 491 ~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~pi~ 553 (554)
+++||+|| +++++++++|++|+++++|+||++++||+++ ||||.|+. ||++|++||++|||
T Consensus 490 e~~wK~lN-~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 490 DETWKKMN-KEKLGGSLFAKPFVETAINLARQSHCTYHNG-DAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHH-HHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC----CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHHhcCCC
Confidence 99999999 9999988999999999999999999999999 99999976 99999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=3.9e-160 Score=1316.50 Aligned_cols=533 Identities=32% Similarity=0.562 Sum_probs=510.3
Q ss_pred CCCCCCCCCCCCccccccccCCccccchhhHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHH
Q 008767 16 ARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQ 95 (554)
Q Consensus 16 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~ 95 (554)
.||++|||||+|||+||+++++ .+..+.+.+++++||++||+|+.+. .|++++|+|||+||||||+|||++||+++|+
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~~~Lk~~V~~~~~~~-~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~ 78 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSLLS-DYKEDKHVIRASELVTLVKMELEKE-TDQIRQLELIDDLQRMGLSDHFQNEFKEILS 78 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHCCC-SSCSTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTGGGTTHHHHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCCCc-hhhhhHHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHhCCchhhhHHHHHHHHH
Confidence 3899999999999999997543 3545678899999999999999874 4899999999999999999999999999999
Q ss_pred HHHhc-cC-----CC-CCChhhHHHHHHHhhhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHH
Q 008767 96 KLAND-LG-----SD-SDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVIL 168 (554)
Q Consensus 96 ~i~~~-~~-----~~-~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~~lL~LyeAs~l~~~gE~iL 168 (554)
+||+. .. .. ..||++|||+|||||||||+||||||++|||++|+|++++++||+||||||||||+++|||+||
T Consensus 79 ~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL 158 (543)
T 2ong_A 79 SIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTL 158 (543)
T ss_dssp HHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHH
T ss_pred HHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHH
Confidence 99985 11 11 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhh-cCCccHHHHHHHHccCcccccchhHHHHHhHHhhcCCCcCcHHHHHHHhhchHHHHHhhHHH
Q 008767 169 DEAIVFTTTHLKSMISR-VISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKE 247 (554)
Q Consensus 169 dea~~ft~~~L~~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E 247 (554)
|||+.||++||++.+.+ +.+++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+|
T Consensus 159 ~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~E 238 (543)
T 2ong_A 159 ESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEE 238 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999875 33678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhh
Q 008767 248 LSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKR 327 (554)
Q Consensus 248 l~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~r 327 (554)
|++++|||+++||.+++||+|||+++||||++ |++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|
T Consensus 239 l~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~-a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~r 317 (543)
T 2ong_A 239 LKESFRWWRNTGFVEKLPFARDRLVECYFWNT-GIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRR 317 (543)
T ss_dssp HHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHH-HHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHHHHH-HhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Confidence 99999999999998779999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhcc
Q 008767 328 WDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSI 407 (554)
Q Consensus 328 Wd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~ 407 (554)
||++++++||+|||+||.++++++++++.++.+.+++++++|++++|++++++|++||+|+.+||+||+||||+||.+|+
T Consensus 318 WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~ 397 (543)
T 2ong_A 318 WDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSI 397 (543)
T ss_dssp TCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccc
Confidence 99999999999999999999999999998887777779999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcCCCCHHHHHHHHH
Q 008767 408 AVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALW 487 (554)
Q Consensus 408 g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~~i~ 487 (554)
|+++++++++++||..+|+++++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++
T Consensus 398 g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~ 477 (543)
T 2ong_A 398 SGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVK 477 (543)
T ss_dssp CHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHh-hccCCCChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCccC
Q 008767 488 LEIANGWKDLNYEEL-LNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVT 553 (554)
Q Consensus 488 ~~i~~~wk~ln~~e~-l~~~~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~pi~ 553 (554)
++|+++||+|| +++ ++++++|++|+++++|+||+++++|+++ ||||.|+. ||++|++||++|||
T Consensus 478 ~~ie~~wk~ln-~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~-D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 478 WLIAEVWKKMN-AERVSKDSPFGKDFIGCAVDLGRMAQLMYHNG-DGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHH-HHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSC-STTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHH-HHhccCCCCCCHHHHHHHHHHHHeehhheeCC-CCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999 999 9988999999999999999999999999 99999976 99999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=7.1e-160 Score=1313.87 Aligned_cols=533 Identities=33% Similarity=0.626 Sum_probs=486.7
Q ss_pred CCCCCCCCCCCCccccccccCCccccchhhHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHH
Q 008767 16 ARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQ 95 (554)
Q Consensus 16 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~ 95 (554)
.||++|||||+|||+||++ +++.+..+.+.+++++||++||+|+.+. .|++++|+|||+||||||+|||++||+++|+
T Consensus 5 ~r~~~~~~ps~W~~~fl~s-~~~~~~~~~~~~~~~~Lk~~V~~~~~~~-~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~ 82 (549)
T 1n1b_A 5 IRRSGNYQPALWDSNYIQS-LNTPYTEERHLDRKAELIVQVRILLKEK-MEPVQQLELIHDLKYLGLSDFFQDEIKEILG 82 (549)
T ss_dssp ----------CCCHHHHHH-CCCSTTSHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcccC-CCcchhhhHHHHHHHHHHHHHHHHHhcc-cCHHHHHHhHHHHHhCCchhhhHHHHHHHHH
Confidence 6999999999999999954 4433445678899999999999999764 5899999999999999999999999999999
Q ss_pred HHHhcc----CC--CCCChhhHHHHHHHhhhcCcccchhhhhccccccc-cccccccccchhhhhHHHhhcccccCchHH
Q 008767 96 KLANDL----GS--DSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEG-KFKASMINNVRGMLSLYEAAHLAVHGEVIL 168 (554)
Q Consensus 96 ~i~~~~----~~--~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g-~F~~~~~~d~~~lL~LyeAs~l~~~gE~iL 168 (554)
+||+.. .. ...||++|||+|||||||||+||||||++|||++| +|++++++||+||||||||||+++|||+||
T Consensus 83 ~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL 162 (549)
T 1n1b_A 83 VIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL 162 (549)
T ss_dssp HHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHH
Confidence 999751 11 24799999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhh---cCCccHHHHHHHHccCcccccchhHHHHHhHHhhcCCCcCcHHHHHHHhhchHHHHHhhH
Q 008767 169 DEAIVFTTTHLKSMISR---VISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQ 245 (554)
Q Consensus 169 dea~~ft~~~L~~~~~~---~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lLelAkldFn~~Q~~hq 245 (554)
|||+.||++||++.+.+ +.+++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||
T Consensus 163 ~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq 242 (549)
T 1n1b_A 163 ELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQ 242 (549)
T ss_dssp HHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998875 326789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHh
Q 008767 246 KELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAV 325 (554)
Q Consensus 246 ~El~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai 325 (554)
+||++++|||+++||.+++||+|||+++||||++ |++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||
T Consensus 243 ~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~-a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai 321 (549)
T 1n1b_A 243 QELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAV-GMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTF 321 (549)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHH-HHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9999999999999998779999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhh
Q 008767 326 KRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALR 405 (554)
Q Consensus 326 ~rWd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~ 405 (554)
+|||+++++++|+|||+||.++++++++++.++.+.+|+++++|++++|++++++|++||+|+++||+||+||||+||.+
T Consensus 322 ~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~v 401 (549)
T 1n1b_A 322 KRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 401 (549)
T ss_dssp HHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhccc
Confidence 99999999999999999999999999999988777777799999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhcCCCCCHHH-HHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcCCCCHHHHHH
Q 008767 406 SIAVLPVVTASFLDMGDIATKEV-FEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEK 484 (554)
Q Consensus 406 S~g~~~~~~~~~~~~g~~l~~e~-~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~ 484 (554)
|+|+++++++++++||..+|+++ ++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||++
T Consensus 402 S~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~ 481 (549)
T 1n1b_A 402 SVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVE 481 (549)
T ss_dssp HTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCccC
Q 008767 485 ALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVT 553 (554)
Q Consensus 485 ~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~pi~ 553 (554)
+++++|+++||+|| +++++++++|++|+++++|+||+++++|+++ ||||.|+. ||++|++||++|||
T Consensus 482 ~i~~~i~~~wk~ln-~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~-Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 482 HVKFLIREAWKDMN-TAIAAGYPFPDGMVAGAANIGRVAQFIYLHG-DGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHH-HHHHTCCSSCHHHHHHHHHHHHHHHHHTTTS-CCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHeeehheeCC-CCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999999999999 9999988999999999999999999999999 99999976 99999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2.3e-159 Score=1313.58 Aligned_cols=533 Identities=34% Similarity=0.569 Sum_probs=467.0
Q ss_pred CCCCCCCCCCCCccccccccCCccccchhhHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHH
Q 008767 16 ARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQ 95 (554)
Q Consensus 16 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~ 95 (554)
.||++|||||+|||+||+++++ .+..+.+.+++++||++||+|+.+. .|++++|+|||+||||||+|||++||+++|+
T Consensus 34 ~r~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~~~Lk~~Vr~~~~~~-~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~ 111 (569)
T 2j5c_A 34 WIRTGGYQPTLWDFSTIQSFDS-EYKEEKHLMRAAGMIDQVKMMLQEE-VDSIRRLELIDDLRRLGISCHFEREIVEILN 111 (569)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred cCCCCCCCCCcCCcccccCCCc-hhhhHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhCCchhhhHHHHHHHHH
Confidence 8999999999999999997543 3444567899999999999999874 4899999999999999999999999999999
Q ss_pred HHH-hccCCCCCChhhHHHHHHHhhhcCcccchhhhhccccccc-cccccccccchhhhhHHHhhcccccCchHHHHHHH
Q 008767 96 KLA-NDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEG-KFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIV 173 (554)
Q Consensus 96 ~i~-~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g-~F~~~~~~d~~~lL~LyeAs~l~~~gE~iLdea~~ 173 (554)
+|| +.......||++|||+|||||||||+||||||++|||++| +|++++++||+||||||||||+++|||+|||||+.
T Consensus 112 ~i~~~~~~~~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~~ 191 (569)
T 2j5c_A 112 SKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARD 191 (569)
T ss_dssp HHTTSSCCSCTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHH
T ss_pred HHHHhccCcccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 999 7522245799999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhcCCccHHHHHHHHccCcccccchhHHHHHhHHhhcCCCcCcHHHHHHHhhchHHHHHhhHHHHHHHHH
Q 008767 174 FTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTR 253 (554)
Q Consensus 174 ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsr 253 (554)
||++||++++.++.+++|+++|++||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++++|
T Consensus 192 Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~r 271 (569)
T 2j5c_A 192 FATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASR 271 (569)
T ss_dssp HHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999876543678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhhcCCCCc
Q 008767 254 WWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVT 333 (554)
Q Consensus 254 Wwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~ 333 (554)
||+++||.+++||+|||+++||||++ |++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||++++
T Consensus 272 Wwke~~L~~kl~faRdR~ve~Yfw~~-a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~ 350 (569)
T 2j5c_A 272 WWNSTGLVHELPFVRDRIVECYYWTT-GVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESM 350 (569)
T ss_dssp HHHHHTHHHHCC--CCCHHHHHHHHH-HHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGG
T ss_pred HHHHcCCccccchHHHHHHHHHHHHH-HhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCcccc
Confidence 99999998779999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHH
Q 008767 334 DTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVV 413 (554)
Q Consensus 334 ~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~ 413 (554)
++||+|||+||.++++++++++.++.+.+++++++|++++|++++++|++||+|+.+||+||+||||+||.+|+|+++++
T Consensus 351 ~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~ 430 (569)
T 2j5c_A 351 KQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPIL 430 (569)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHH
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHH
Confidence 99999999999999999999998887777779999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHH
Q 008767 414 TASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANG 493 (554)
Q Consensus 414 ~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~ 493 (554)
++++++||..+|+++++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++
T Consensus 431 ~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~ 510 (569)
T 2j5c_A 431 SHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQT 510 (569)
T ss_dssp HHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHhhccCCCChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCccC
Q 008767 494 WKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVT 553 (554)
Q Consensus 494 wk~ln~~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~pi~ 553 (554)
||+|| +++++ +++|++|+++++|+||+++++|+++.||||.|+. ||++|++||++|||
T Consensus 511 wk~ln-~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 511 WKMMN-KEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHH-HHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHH-HHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999 99999 8999999999999999999999986699999975 99999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=8.7e-143 Score=1217.77 Aligned_cols=487 Identities=34% Similarity=0.597 Sum_probs=454.9
Q ss_pred hhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cC--------CCCCChhhHHHHHHHhhhcCcccchhhhhccc
Q 008767 64 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG--------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 134 (554)
Q Consensus 64 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~--------~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~ 134 (554)
|.|++++|++||+||||||+|||++||+++|+++|+. .. ....||++|||+|||||||||+||||||++|+
T Consensus 295 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 374 (817)
T 3sdr_A 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFK 374 (817)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHh
Confidence 5789999999999999999999999999999999985 11 11469999999999999999999999999999
Q ss_pred cccccccccc---cccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhhc-------CCccHHHHHHHHccCccc
Q 008767 135 DDEGKFKASM---INNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRV-------ISNNLAEQIQHALRLPLR 204 (554)
Q Consensus 135 d~~g~F~~~~---~~d~~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~-------~~~~l~~~V~~aL~~P~~ 204 (554)
|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++.+.+. .+++|+++|+|||++|||
T Consensus 375 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~ 454 (817)
T 3sdr_A 375 DANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWH 454 (817)
T ss_dssp CC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCST
T ss_pred hcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchh
Confidence 9999999864 699999999999999999999999999999999999987531 136799999999999999
Q ss_pred ccchhHHHHHhHHhhcCCCc------------CcHHHHHHHhhchHHHHHhhHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 008767 205 KALPRLEARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 272 (554)
Q Consensus 205 ~~~~rlear~yi~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdr~v 272 (554)
+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++||. +|||+|||++
T Consensus 455 ~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~-~l~faRdr~v 533 (817)
T 3sdr_A 455 ASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLP-LFTFARERPL 533 (817)
T ss_dssp TCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGG-GCTTSCCCHH
T ss_pred ccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCCC-cCccHHHHHH
Confidence 99999999999999998875 4999999999999999999999999999999999995 8999999999
Q ss_pred HHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHH
Q 008767 273 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYN 352 (554)
Q Consensus 273 e~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~f~al~~~~~ 352 (554)
|||||++ |++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++
T Consensus 534 e~Yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~ 612 (817)
T 3sdr_A 534 EFYFLVA-AGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVH 612 (817)
T ss_dssp HHHHHHH-TTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHH-HHHHHHhhcCCCCCHHHHHH
Q 008767 353 EAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLP-VVTASFLDMGDIATKEVFEW 431 (554)
Q Consensus 353 ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~-~~~~~~~~~g~~l~~e~~e~ 431 (554)
|++.++.+.+|.++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++ ++.++++++|+.+|+++++|
T Consensus 613 e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~ 692 (817)
T 3sdr_A 613 EVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEK 692 (817)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHT
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhc
Confidence 99887666555599999999999999999999999999999999999999999999999 88889999999999999999
Q ss_pred hh--chhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCC
Q 008767 432 VL--KVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH-VVSEEEAEKALWLEIANGWKDLNYEELLNLIAM 508 (554)
Q Consensus 432 ~~--~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~-g~S~EeA~~~i~~~i~~~wk~ln~~e~l~~~~~ 508 (554)
+. ++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+|| ++|++++++
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln-~e~l~~~~~ 771 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELT-REFLKPDDV 771 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHH-HHHHSCCSS
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCC
Confidence 75 456999999999999999999999999999999999999999 79999999999999999999999 999998899
Q ss_pred ChhHHHHHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCccCC
Q 008767 509 PLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 554 (554)
Q Consensus 509 p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~pi~~ 554 (554)
|++|+++++|+||++++||+++ ||||.|+. ||++|++||++|||+
T Consensus 772 p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 772 PFACKKMLFEETRVTMVIFKDG-DGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSC-CSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999 99999976 999999999999986
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=3e-142 Score=1206.16 Aligned_cols=484 Identities=31% Similarity=0.536 Sum_probs=454.7
Q ss_pred hhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cC--------CCCCChhhHHHHHHHhhhcCcccchhhhhccc
Q 008767 64 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG--------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 134 (554)
Q Consensus 64 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~--------~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~ 134 (554)
|.|++++||+||+||||||+|||++||+++|+++|+. .. ....||++|||+|||||||||+||||||++|+
T Consensus 243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 322 (764)
T 3p5p_A 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK 322 (764)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence 5789999999999999999999999999999999985 11 11469999999999999999999999999999
Q ss_pred ccccccccc---ccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhh--cCCccHHHHHHHHccCcccccchh
Q 008767 135 DDEGKFKAS---MINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR--VISNNLAEQIQHALRLPLRKALPR 209 (554)
Q Consensus 135 d~~g~F~~~---~~~d~~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~r 209 (554)
|++|+|+++ +.+|++||||||||||+++|||+|||||+.||++||++.+.+ ..+++|+++|+|||++|||+++||
T Consensus 323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~R 402 (764)
T 3p5p_A 323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR 402 (764)
T ss_dssp CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHH
T ss_pred cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchH
Confidence 999999974 689999999999999999999999999999999999998763 236789999999999999999999
Q ss_pred HHHHHhHHhhcCCCc------------CcHHHHHHHhhchHHHHHhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 008767 210 LEARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFW 277 (554)
Q Consensus 210 lear~yi~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdr~ve~yf~ 277 (554)
||||+||++|++++. +|++||||||||||+||++||+||++++||||++||. ++||+|||++|||||
T Consensus 403 lear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l~-~l~faRdr~ve~Yfw 481 (764)
T 3p5p_A 403 LEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYFS 481 (764)
T ss_dssp HHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-TTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCCC-cCccHHHHHHHHHHH
Confidence 999999999998865 4999999999999999999999999999999999996 899999999999999
Q ss_pred HhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHH
Q 008767 278 TLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 357 (554)
Q Consensus 278 ~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~f~al~~~~~ei~~~ 357 (554)
++ | |||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|++.+
T Consensus 482 ~~-~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~ 558 (764)
T 3p5p_A 482 SA-T--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNND 558 (764)
T ss_dssp TC-C--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-h--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 99 8 99999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHH-hCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchh
Q 008767 358 LAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVP 436 (554)
Q Consensus 358 ~~~-~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p 436 (554)
+.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++++++++|+.+|+++++|+..+|
T Consensus 559 ~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~ 637 (764)
T 3p5p_A 559 VVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPS 637 (764)
T ss_dssp HHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTS
T ss_pred HHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhH
Confidence 655 666 999999999999999999999999999999999999999999999999999999999999999999976669
Q ss_pred HHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhHHHhhc-cCCCChhHHH
Q 008767 437 KIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH-VVSEEEAEKALWLEIANGWKDLNYEELLN-LIAMPLPLLG 514 (554)
Q Consensus 437 ~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~-g~S~EeA~~~i~~~i~~~wk~ln~~e~l~-~~~~p~~~~~ 514 (554)
+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+|| ++|++ ++++|++|++
T Consensus 638 ~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln-~e~l~~~~~~p~~~~~ 716 (764)
T 3p5p_A 638 NMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEAS-FEYFKPSNDIPMGCKS 716 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH-HHHHSCCSSSCHHHHH
T ss_pred HHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHhhCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999 79999999999999999999999 99997 7789999999
Q ss_pred HHHHHhhhhhhccccCCCCCCCChh-HHHHHHhhhcCccCC
Q 008767 515 PVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 554 (554)
Q Consensus 515 ~~~N~aR~~~~~Y~~~~D~~t~~~~-~k~~i~~ll~~pi~~ 554 (554)
+++|+||++++||+++ ||||.|+. ||++|++||++||++
T Consensus 717 ~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 717 FIFNLRLCVQIFYKFI-DGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHTHHHHHHHSCC--------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhcCC-CCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999999999999999 99999976 999999999999974
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=3.2e-142 Score=1208.87 Aligned_cols=484 Identities=32% Similarity=0.563 Sum_probs=458.0
Q ss_pred hhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cC--------CCCCChhhHHHHHHHhhhcCcccchhhhhccc
Q 008767 64 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG--------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 134 (554)
Q Consensus 64 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~--------~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~ 134 (554)
|.|++++||+||+||||||+|||++||+++|+++|+. .. ....||++|||+|||||||||+||||||++|+
T Consensus 267 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 346 (785)
T 3s9v_A 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFR 346 (785)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999985 11 12369999999999999999999999999999
Q ss_pred cccccccccc---cccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhh-------cCCccHHHHHHHHccCccc
Q 008767 135 DDEGKFKASM---INNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR-------VISNNLAEQIQHALRLPLR 204 (554)
Q Consensus 135 d~~g~F~~~~---~~d~~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-------~~~~~l~~~V~~aL~~P~~ 204 (554)
|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++.+.. ..+++|+++|+|||++|||
T Consensus 347 d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~ 426 (785)
T 3s9v_A 347 DENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWH 426 (785)
T ss_dssp CTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGG
T ss_pred hcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccc
Confidence 9999999865 79999999999999999999999999999999999998753 1267899999999999999
Q ss_pred ccchhHHHHHhHHhhcCCCc------------CcHHHHHHHhhchHHHHHhhHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 008767 205 KALPRLEARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 272 (554)
Q Consensus 205 ~~~~rlear~yi~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdr~v 272 (554)
+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++||. +|||+|||++
T Consensus 427 ~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~-~l~faRdr~v 505 (785)
T 3s9v_A 427 KSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT-DLNFTRERVT 505 (785)
T ss_dssp GCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-SCSSSCCCHH
T ss_pred cCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCC-cCccHHHHHH
Confidence 99999999999999998875 4999999999999999999999999999999999995 8999999999
Q ss_pred HHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHH
Q 008767 273 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYN 352 (554)
Q Consensus 273 e~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~f~al~~~~~ 352 (554)
|||||++ |++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++
T Consensus 506 e~Yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~n 584 (785)
T 3s9v_A 506 EIYFSPA-SFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFN 584 (785)
T ss_dssp HHHHHHH-HHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhcCCCCCHHHHHH
Q 008767 353 EAEEELAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEW 431 (554)
Q Consensus 353 ei~~~~~~-~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~ 431 (554)
|++.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|
T Consensus 585 ei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~ 663 (785)
T 3s9v_A 585 DIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSK 663 (785)
T ss_dssp HHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTT
T ss_pred HHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhc
Confidence 99887655 666 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCCh
Q 008767 432 VLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH-VVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPL 510 (554)
Q Consensus 432 ~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~-g~S~EeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~ 510 (554)
+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+|| +++++++ +|+
T Consensus 664 ~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln-~e~l~~~-~p~ 741 (785)
T 3s9v_A 664 IDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELN-REFVNNK-IPD 741 (785)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHSC-CCH
T ss_pred ccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCC-CCH
Confidence 76669999999999999999999999999999999999999999 99999999999999999999999 9999988 999
Q ss_pred hHHHHHHHHhhhhhhccccCCCCCCCChh--HHHHHHhhhcCccC
Q 008767 511 PLLGPVLNLARMSEFIYEDGVDRYTNSYK--MKDQVALVLKDPVT 553 (554)
Q Consensus 511 ~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~--~k~~i~~ll~~pi~ 553 (554)
+|+++++|+||++++||+++ ||||.|+. ||++|++||++||.
T Consensus 742 ~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 742 IYKRLVFETARIMQLFYMQG-DGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-C----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999 99999975 99999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=2.6e-107 Score=912.40 Aligned_cols=449 Identities=21% Similarity=0.327 Sum_probs=389.0
Q ss_pred HHHHHHHHHHHHHHHhhc----hhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-c-C-------CCCCChhhHH
Q 008767 46 QEQYDALKQEVRRMITSA----VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-L-G-------SDSDNLYTVS 112 (554)
Q Consensus 46 ~~~~~~lk~~v~~~l~~~----~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~-~-------~~~~dl~~~a 112 (554)
.+..+-|+..|++..... |.|++++||+||+||||||+|||++||+++|+++|+. . . ....||++||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA 299 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA 299 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence 466778999998876443 4789999999999999999999999999999999975 1 1 1246999999
Q ss_pred HHHHHhhhcCcccchhhhhcccccccccccc---ccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhhc---
Q 008767 113 LRFRLLRQQRVKISCDVFEKFKDDEGKFKAS---MINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRV--- 186 (554)
Q Consensus 113 l~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~---~~~d~~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~--- 186 (554)
|+|||||||||+||||||++|+ ++|+|++. ..+|++|||+||||||+++|||+|||||+.||++||++.+...
T Consensus 300 L~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 378 (727)
T 3pya_A 300 MAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELI 378 (727)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999 88999953 4789999999999999999999999999999999999987521
Q ss_pred ----CCccHHHHHHHHccCcccccchhHHHHHhHHhhcCCCc-------------CcHHHHHHHhhchHHHHHhhHHHHH
Q 008767 187 ----ISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDL-------------HDETLLKFAKLDFNLLQAAHQKELS 249 (554)
Q Consensus 187 ----~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~-------------~n~~lLelAkldFn~~Q~~hq~El~ 249 (554)
.+++|+++|+|||++|||+++||||||+||++|+++++ +|++||||||||||+||++||+||+
T Consensus 379 dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 458 (727)
T 3pya_A 379 DKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWD 458 (727)
T ss_dssp CSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHh
Confidence 14789999999999999999999999999999997654 6999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhhcC
Q 008767 250 DMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWD 329 (554)
Q Consensus 250 ~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd 329 (554)
+++||||++||. +|||+|||++|||||++ |++|||+||.+|+++||++++++++||+||+|| |||+.||+||+|||
T Consensus 459 ~lsrWwk~~~l~-~l~faRdr~ve~Yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd 534 (727)
T 3pya_A 459 IFQKWYEENRLS-EWGVRRSELLECYYLAA-ATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYI 534 (727)
T ss_dssp HHHHHHHHTTGG-GGTCCHHHHHHHHHHHH-TTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC
T ss_pred hhheeHHhcCcc-cCCchhhHHHHHHHHHH-hccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcc
Confidence 999999999996 69999999999999999 999999999999999999999999999999999 99999999999999
Q ss_pred CC---------CcCC---CChh--HHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 008767 330 TN---------VTDT---LPAC--MKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPS 395 (554)
Q Consensus 330 ~~---------~~~~---lPe~--mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt 395 (554)
.. +++. +|+| ||+||.||++++||++.+..+.+|.++++|++++|.++++++++||+ +
T Consensus 535 ~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~------- 606 (727)
T 3pya_A 535 ANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E------- 606 (727)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C-------
T ss_pred cccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c-------
Confidence 74 3333 3877 99999999999999987655555559999999999999999999997 2
Q ss_pred HHHhhhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcC
Q 008767 396 VEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH 475 (554)
Q Consensus 396 leEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~ 475 (554)
+| |. +++.++.+..|..+++ ++.. +.+..|.++++.||||+||+.+|++|+
T Consensus 607 -~E---------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~---------------- 657 (727)
T 3pya_A 607 -GE---------GE-LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE---------------- 657 (727)
T ss_dssp -CH---------HH-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH----------------
T ss_pred -cc---------ee-eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH----------------
Confidence 33 11 4555555555888887 5443 455669999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhHHHhhccC--CCChhHHHHHHHHhhhhhhccccCCCCCCCChhHHHHHHhhhcCccC
Q 008767 476 VVSEEEAEKALWLEIANGWKDLNYEELLNLI--AMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVT 553 (554)
Q Consensus 476 g~S~EeA~~~i~~~i~~~wk~ln~~e~l~~~--~~p~~~~~~~~N~aR~~~~~Y~~~~D~~t~~~~~k~~i~~ll~~pi~ 553 (554)
.+++.+.|+..|++|+ +.|++++ .+|++| |+++|++.||.. ||++|+ |+.+|.+||++||-
T Consensus 658 -------~~~~~~~IE~~mqEL~-~lVl~~~~~~ip~~~-----tf~~V~ksFYy~---ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 658 -------KEKTIKSMEKEMGKMV-ELALSESDTFRDVSI-----TFLDVAKAFYYF---ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp -------HHHHHHHHHHHHHHHH-HHHHSCCTTTHHHHH-----HHHHHHHHHHHH---HHHTTS-CHHHHHHHHHSCCC
T ss_pred -------HHHHHHHHHHHHHHHH-HHHhccCCCCCCCcc-----cHHHHHHHHHhh---hcCCHH-HHHHHHHHHcCccc
Confidence 5578999999999999 9999864 699999 999999999984 899998 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.9e-50 Score=420.34 Aligned_cols=251 Identities=18% Similarity=0.142 Sum_probs=225.9
Q ss_pred HHhhHHHHHHH-HHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhccccC--CCHH
Q 008767 241 QAAHQKELSDM-TRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAY--GTFE 316 (554)
Q Consensus 241 Q~~hq~El~~l-srWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~iiDD~fD~~--gt~e 316 (554)
+..|.+|++.. ++||+++|+.+ .||+|+|++++|||.+ +++++|+++.+|+ ++||+++|+|++||+||.+ ||++
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~-~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~e 92 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADL-ASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPE 92 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHH-HHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHH
Confidence 34577788766 56999999975 5999999999999999 9999999999999 9999999999999999998 6999
Q ss_pred HHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCC-C
Q 008767 317 ELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVP-S 395 (554)
Q Consensus 317 El~~ft~ai~rWd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vP-t 395 (554)
|++.|++++.+|+.+ .+|+++++++.++.+++++++... ++...++++++|.+|++++++||+|+.+|++| |
T Consensus 93 e~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s 165 (337)
T 1ps1_A 93 DTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDS 165 (337)
T ss_dssp HHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999864 489999999999999999997542 33567899999999999999999999999999 9
Q ss_pred HHHhhhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcC
Q 008767 396 VEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH 475 (554)
Q Consensus 396 leEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~ 475 (554)
++||+++|++|+|++++++++++++|..+|+++++. +..++|+++++.++||+|||+||++|+++|+++|+|.|||+++
T Consensus 166 ~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 166 AAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc
Confidence 999999999999999999999999999999987665 4556899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 008767 476 VVSEEEAEKALWLEIANGWKDLNYEEL 502 (554)
Q Consensus 476 g~S~EeA~~~i~~~i~~~wk~ln~~e~ 502 (554)
|+|+|+|++++.++|+++||++| ++.
T Consensus 245 g~s~eeA~~~v~~~i~~~~~~~~-~~~ 270 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLEQYL-LLE 270 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999 876
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=4.4e-49 Score=403.10 Aligned_cols=242 Identities=13% Similarity=0.137 Sum_probs=221.6
Q ss_pred hhHHHHHHHH-HHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhccccCCCHHHHHH
Q 008767 243 AHQKELSDMT-RWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAYGTFEELTL 320 (554)
Q Consensus 243 ~hq~El~~ls-rWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~iiDD~fD~~gt~eEl~~ 320 (554)
-|.+|++... +||+++|+. +.||+|+|++++|||.+ +++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~-~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~ 89 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEV-TCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEA 89 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHH-HHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchh-hhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHH
Confidence 4677888774 577999997 46999999999999998 8888899999999 999999999999999999 78999999
Q ss_pred HHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhh
Q 008767 321 FTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYK 400 (554)
Q Consensus 321 ft~ai~rWd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl 400 (554)
|++++.+|+.+ +.+|+||++++.++++++++++.... .+.++.|+.++++++ ||+|+..|++||++||+
T Consensus 90 ~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl 158 (300)
T 1di1_A 90 YNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYL 158 (300)
T ss_dssp HHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHH
T ss_pred HHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHH
Confidence 99999999875 46899999999999999999976542 256777999999997 89999999999999999
Q ss_pred hhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCC--------CcchhhHHH
Q 008767 401 SVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGH--------IPSAVECYM 472 (554)
Q Consensus 401 ~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~--------~~n~V~cyM 472 (554)
++|++|+|++++++++++++|..+|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 159 ~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 159 EYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 999999999999999999999999999998 459999999999999999999999999999 789999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 008767 473 KQHVVSEEEAEKALWLEIANGWKDLNYEEL 502 (554)
Q Consensus 473 ~e~g~S~EeA~~~i~~~i~~~wk~ln~~e~ 502 (554)
+++|+|+|+|+++++++|+++|+++| +..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~-~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHD-EIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999 765
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=2e-47 Score=394.74 Aligned_cols=244 Identities=15% Similarity=0.158 Sum_probs=219.1
Q ss_pred HHhhHHHHHHHH-HHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhccccCCCHHHH
Q 008767 241 QAAHQKELSDMT-RWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAYGTFEEL 318 (554)
Q Consensus 241 Q~~hq~El~~ls-rWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~iiDD~fD~~gt~eEl 318 (554)
...|.+|++... +||+++|+... ||+|+|++++|||.+ +++++|+++.+|+ ++||+++|+|++||+||. |+++|+
T Consensus 25 ~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~-~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~ 101 (320)
T 3bny_A 25 CHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRV-TCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEG 101 (320)
T ss_dssp CCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHH-HHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhh-HhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhH
Confidence 345777888774 47799999755 999999999999998 8888899999999 999999999999999999 789999
Q ss_pred HHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 008767 319 TLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEE 398 (554)
Q Consensus 319 ~~ft~ai~rWd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleE 398 (554)
+.|++++.+|+.+ +.+|++|++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||++|
T Consensus 102 ~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~ee 170 (320)
T 3bny_A 102 SAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGG 170 (320)
T ss_dssp HHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHH
T ss_pred HHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHH
Confidence 9999999999864 4689999999999999999997654 2 24555577777 5999999999999999999
Q ss_pred hhhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCC--------CcchhhH
Q 008767 399 YKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGH--------IPSAVEC 470 (554)
Q Consensus 399 Yl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~--------~~n~V~c 470 (554)
|+++|++|+|++++++++++++|..+|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++|+|.|
T Consensus 171 Yl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~ 247 (320)
T 3bny_A 171 YLEYRERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQI 247 (320)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHH
Confidence 99999999999999999999999999999988 369999999999999999999999999998 7899999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 008767 471 YMKQHVVSEEEAEKALWLEIANGWKDLNYEEL 502 (554)
Q Consensus 471 yM~e~g~S~EeA~~~i~~~i~~~wk~ln~~e~ 502 (554)
||+++|+|+|+|++++.++|++.|++++ +..
T Consensus 248 ~m~~~g~s~eeA~~~~~~~i~~~~~~~~-~l~ 278 (320)
T 3bny_A 248 LAQEADVTAEAAKRVLFVMCREWELRHQ-LLV 278 (320)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999 755
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=1.5e-45 Score=390.70 Aligned_cols=242 Identities=12% Similarity=0.008 Sum_probs=220.8
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhcccc--CC-CHHHHHHHHHHhh
Q 008767 251 MTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDA--YG-TFEELTLFTEAVK 326 (554)
Q Consensus 251 lsrWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~iiDD~fD~--~g-t~eEl~~ft~ai~ 326 (554)
+.+||+++|+.. -+++|+|+++++||.+ +++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.
T Consensus 66 ~~~W~~~~gl~~-~~~~r~r~~~~~~~~l-aa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~ 143 (382)
T 3kb9_A 66 TRTWLLEKRLMP-ADKVEEYADGLCYTDL-MAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLH 143 (382)
T ss_dssp HHHHHHHTTSSC-HHHHHHHHHHHCHHHH-HHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-CHHHHHHHHhCCHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH
Confidence 577999999964 3899999999999999 9999999999999 999999999999999996 56 9999999999998
Q ss_pred hcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhc
Q 008767 327 RWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRS 406 (554)
Q Consensus 327 rWd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S 406 (554)
++-.. ...+|+++++++.++.+++++++..+. +...++++++|++++++|++||+|+.+|++||++|||++|++|
T Consensus 144 ~~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~----~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s 218 (382)
T 3kb9_A 144 TALDS-PGDHLHHEDTLVAGFADSVRRLYAFLP----ATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLT 218 (382)
T ss_dssp HHHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHhcC-CCCCCCCCChHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Confidence 85211 223588999999999999999964322 2347899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchhhHHHhcCCCCHHHHHHHH
Q 008767 407 IAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKAL 486 (554)
Q Consensus 407 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~~i 486 (554)
+|+.++++++++++|..+|++++++ +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++
T Consensus 219 ~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v 297 (382)
T 3kb9_A 219 FAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEV 297 (382)
T ss_dssp TTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999998887 667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHH
Q 008767 487 WLEIANGWKDLNYEE 501 (554)
Q Consensus 487 ~~~i~~~wk~ln~~e 501 (554)
+++|+++||++| +.
T Consensus 298 ~~~i~~~~k~~~-~~ 311 (382)
T 3kb9_A 298 RRRVEECITEFL-AV 311 (382)
T ss_dssp HHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHH-HH
Confidence 999999999999 73
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=1.2e-32 Score=295.34 Aligned_cols=245 Identities=15% Similarity=0.127 Sum_probs=186.0
Q ss_pred HHH-HHHHHHHhcCCCCCChhhHHHHHHHHHHHhhccccCCCc-cchhH-HHHHHHHHHHhhhhc-cccCC-CHHH-HHH
Q 008767 247 ELS-DMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKY-TFGRI-LVSKIICLISLIDDT-FDAYG-TFEE-LTL 320 (554)
Q Consensus 247 El~-~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~-s~~Rl-~~aK~~~l~~iiDD~-fD~~g-t~eE-l~~ 320 (554)
|++ ++..|..++++... +..|+++..+-|-.+ +++..|.. +..|+ +.+|+++|+|++||. +|..| +.+. ...
T Consensus 130 ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~ll-aa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~ 207 (433)
T 3v1v_A 130 EVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRY-MVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGR 207 (433)
T ss_dssp HHHHHHHHHHHHTSCCCC-----CCSCHHHHHHH-HHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHH
Confidence 444 44669999876422 455778877755444 34445999 79999 999999999999999 59755 3222 122
Q ss_pred HHH---HhhhcCCCCcCCCChh-----HHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCC
Q 008767 321 FTE---AVKRWDTNVTDTLPAC-----MKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 392 (554)
Q Consensus 321 ft~---ai~rWd~~~~~~lPe~-----mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~ 392 (554)
+.. ++..... ..+.-|.. -.++..+++++++++.... .+...++++++|++|+++|++||+|+.+|+
T Consensus 208 l~~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a----~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~ 282 (433)
T 3v1v_A 208 LLLAHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAA----TPSQSDRYRHDMARLHLGYLAEGAWAQTGH 282 (433)
T ss_dssp HHHHHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222 2222111 11111100 1245789999999996542 224577999999999999999999999999
Q ss_pred CCCHHHhhhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccC-CCcchhhHH
Q 008767 393 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRG-HIPSAVECY 471 (554)
Q Consensus 393 vPtleEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG-~~~n~V~cy 471 (554)
+||+||||++|++| |+.++++++.+++|..+|++++++ +...+|+++++.++||+|||+||+||+++| +++|+|.||
T Consensus 283 vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~ 360 (433)
T 3v1v_A 283 VPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVI 360 (433)
T ss_dssp CCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHH
T ss_pred CCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHH
Confidence 99999999999999 777777778899999999998776 556679999999999999999999999995 789999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhhHHH
Q 008767 472 MKQHVVSEEEAEKALWLEIANGWKDLNYEE 501 (554)
Q Consensus 472 M~e~g~S~EeA~~~i~~~i~~~wk~ln~~e 501 (554)
|+++|+|+|+|+++++++|+++++++. +.
T Consensus 361 mke~g~S~eeA~~~v~~~i~~~~~~F~-~~ 389 (433)
T 3v1v_A 361 AEREQLCERDAYLKAVEVHNELQHSFE-AA 389 (433)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHH-HH
Confidence 999999999999999999999999988 54
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.73 E-value=2.6e-17 Score=173.17 Aligned_cols=248 Identities=13% Similarity=0.028 Sum_probs=176.2
Q ss_pred HHHHHHHHhcC------------CCCCChhhHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhccccCCCH
Q 008767 249 SDMTRWWKDLD------------IPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAYGTF 315 (554)
Q Consensus 249 ~~lsrWwk~~~------------l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl-~~aK~~~l~~iiDD~fD~~gt~ 315 (554)
.+..+|..+.| |. .-+-..++++.+=.|++ +..| |..+...+ .++++++|+|++||++|..+
T Consensus 33 ~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~la-ar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~-- 107 (374)
T 1yyq_A 33 IENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMV-VYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY-- 107 (374)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHH-HHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--
T ss_pred HHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHH-hhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--
Confidence 34457888888 53 22566677777766655 5555 99998888 99999999999999999654
Q ss_pred HHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 008767 316 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPS 395 (554)
Q Consensus 316 eEl~~ft~ai~rWd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPt 395 (554)
+++..|.+.+-+ +.. |+ .++..++.+.+.++ ....++.+..++.+.|.+++.++..|+.. .+..|+
T Consensus 108 ~~l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl----~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~ 173 (374)
T 1yyq_A 108 PTMVNYFDDLQA--GRE----QA--HPWWALVNEHFPNV----LRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPG 173 (374)
T ss_dssp HHHTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHH----HTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTT
T ss_pred HHHHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCC
Confidence 677777776654 211 11 14555665555555 34445677889999999999999999873 677899
Q ss_pred HHHhhhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhc-cCCCcchhhHHHhc
Q 008767 396 VEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQK-RGHIPSAVECYMKQ 474 (554)
Q Consensus 396 leEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~-rG~~~n~V~cyM~e 474 (554)
.++|...++.++|+.-.... +..+..+.++... .+.....+.....++.|+|||.||.||.. .|+.+|+|.+++.+
T Consensus 174 ~~~Y~~~rR~~sG~~E~~~~--~~~P~~~~~e~~~-~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~ 250 (374)
T 1yyq_A 174 SHDYPQFLRRMNGLGHCVGA--SLWPKEQFNERSL-FLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVS 250 (374)
T ss_dssp CTTHHHHHHHHHHCHHHHHH--TTCCTTTCCTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHH--hhccccccchhhc-chhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhc
Confidence 99999988888887543332 2222222212100 12234466666779999999999999998 49999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhhh
Q 008767 475 HVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARM 522 (554)
Q Consensus 475 ~g~S~EeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR~ 522 (554)
+|+|.++|++++..++..+..++. .. +. ...|. +++.+=+..|.
T Consensus 251 ~g~S~~eAl~~v~~~~~~~~~r~~-~~-L~-~~~~~-~l~al~~~irG 294 (374)
T 1yyq_A 251 DEISLHEALEKLTQDTLHSSKQMV-AV-FS-DKDPQ-VMDTIECFMHG 294 (374)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHH-HH-HS-SSCHH-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-HH-hc-cCCHH-HHHHHHHHHhH
Confidence 999999999999999998888876 53 32 22332 44444444443
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.19 E-value=0.00011 Score=84.25 Aligned_cols=45 Identities=31% Similarity=0.557 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCCccccccccCCccccchhhHHHHHHHHHHHHHHHh
Q 008767 16 ARPIAGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMIT 61 (554)
Q Consensus 16 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 61 (554)
.||+|||+||+|+++||+++.. .+..+.+.+++++|+++||+||.
T Consensus 24 ~Rrsany~Ps~W~~~~i~sl~~-~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 24 IRRTANPHPNVWGYDLVHSLKS-PYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp -----------CHHHHHHTCCC-GGGSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCeeeccCC-cccchhHHHHHHHHHHHHHHHhc
Confidence 7999999999999999998764 35567888999999999999997
No 18
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=90.30 E-value=15 Score=36.42 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHhhhhccccCC-C-HHHHHHHHHHhhh-cCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcch
Q 008767 291 GRILVSKIICLISLIDDTFDAYG-T-FEELTLFTEAVKR-WDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGI 367 (554)
Q Consensus 291 ~Rl~~aK~~~l~~iiDD~fD~~g-t-~eEl~~ft~ai~r-Wd~~~~~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~ 367 (554)
.|-.+.-+-.|.=.+||+-|... . ...|+.+-+.+++ .... |. .+++.+|..++.+.. -
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~--~pv~~al~~~~~~~~---------l-- 101 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----AT--TPAFRALQFTIATCN---------L-- 101 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CC--SHHHHHHHHHHHHHT---------C--
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CC--CHHHHHHHHHHHHcC---------C--
Confidence 34433446666778899999643 2 3445555555544 1121 11 156777776655432 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHH
Q 008767 368 PYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICR 447 (554)
Q Consensus 368 ~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~R 447 (554)
-++.+.+++.++.... .....+|++|+......+.|+.-.+++-.++.. +++.... ....+...-
T Consensus 102 --~~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~---~~~~~~~-------A~~lG~AlQ 166 (294)
T 4hd1_A 102 --PMEPFLRLIEANRRDQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL---DDERARL-------SDATCTALQ 166 (294)
T ss_dssp --CSHHHHHHHHHHHHHH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---SHHHHHH-------HHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhcc---ccCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---CHHHHHH-------HHHHHHHHH
Confidence 1234456667766443 345578998888887777776555555555432 2332221 122233333
Q ss_pred HhcCcCcchhhhccCCCcchh-hHHHhcCCCCHHHH---------HHHHHHHHHHHHHHhhHHHhhccCCCChhHH
Q 008767 448 LLDDVASHKFEQKRGHIPSAV-ECYMKQHVVSEEEA---------EKALWLEIANGWKDLNYEELLNLIAMPLPLL 513 (554)
Q Consensus 448 L~NDI~S~~kE~~rG~~~n~V-~cyM~e~g~S~EeA---------~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~ 513 (554)
|.|=+.......++|-+ .+ .-.|.++|+|.++- ..-+..+++.+..-+. +..--...+|..+.
T Consensus 167 ltNilRDv~eD~~~gR~--YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~-~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 167 VANHMQDIDRDLALGRI--YVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFD-EGRRLESLVPPRLA 239 (294)
T ss_dssp HHHHHHTHHHHHHTTCB--CSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHH-HHGGGGGSSCHHHH
T ss_pred HHHHHHhchhhhccCce--eCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHH
Confidence 44433333444566754 12 34678899998752 2334444444443333 22211245786544
No 19
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=89.35 E-value=13 Score=36.76 Aligned_cols=196 Identities=16% Similarity=0.081 Sum_probs=104.2
Q ss_pred chhHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHhhh-cCCCCc--CCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 008767 290 FGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKR-WDTNVT--DTLPACMKFIYNKLLGVYNEAEEELAKQGRSYG 366 (554)
Q Consensus 290 ~~Rl~~aK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~r-Wd~~~~--~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~ 366 (554)
..|-.+.-+-.+.-.+||+=|......+|+.+-+.+++ .+.... ..-|+ .++..+|..++.+. + -
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~-l- 105 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------N-I- 105 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------C-C-
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------C-C-
Confidence 45665555777777899999976544447766666654 122110 00122 25667776654432 1 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHH
Q 008767 367 IPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENIC 446 (554)
Q Consensus 367 ~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~ 446 (554)
-++.+.+++.|+- .+......+|++|+......+.|+--.+++-.+|... .++..+ .....+...
T Consensus 106 ---~~~~~~~li~g~~---~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~-------~A~~lG~Al 170 (293)
T 3acx_A 106 ---AFQSFYNLIDTVY---KDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYD-------VARRLGESL 170 (293)
T ss_dssp ---CHHHHHHHHHHHH---HHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHH-------HHHHHHHHH
T ss_pred ---CHHHHHHHHHHHH---HHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHH-------HHHHHHHHH
Confidence 1344566667775 3444556789999998888888776666655554432 122222 222223333
Q ss_pred HHhcCcCcchhhhccCCCcchhhHHHhcCCCCHHH---------HHHHHHHHHHHHHHHhhHHHhhccCCCChhHHH
Q 008767 447 RLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEE---------AEKALWLEIANGWKDLNYEELLNLIAMPLPLLG 514 (554)
Q Consensus 447 RL~NDI~S~~kE~~rG~~~n~V~cyM~e~g~S~Ee---------A~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~ 514 (554)
-|.|=|........+|-+- .=.=.|.++|+|.++ ..+-+..++..+..-+. +..--...+|.....
T Consensus 171 QltNilRDv~eD~~~gR~Y-LP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~-~a~~~~~~lp~~~r~ 245 (293)
T 3acx_A 171 QLINILRDVGEDFENERIY-FSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFR-DVMDQIKVFSIEAQP 245 (293)
T ss_dssp HHHHHHHCHHHHHHTTCCC-SCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHTGGGSCTTHHH
T ss_pred HHHHHHHHHHHHHhCCcEE-eCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHH-HHHHhHHhCCHHHHH
Confidence 3333233333445567541 112356788999776 23445566666665544 322112346655443
No 20
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=85.32 E-value=4.5 Score=40.63 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=78.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITAS 442 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~ 442 (554)
.++..+.++....+.|-..+..|... .||.++|+..-..-+|.....+ ...| ++ ..+++..+.+ ..+-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~la-g~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTG-GAEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 45566777778888898888888654 3899999987666555543222 2222 12 2355544333 5567777
Q ss_pred HHHHHHhcCcCcchhhh-----ccCCCcchhhHHHhcCCC--CHHHHHHHHHHHHHHHHHHhhHHHhhccCCCCh-hHHH
Q 008767 443 ENICRLLDDVASHKFEQ-----KRGHIPSAVECYMKQHVV--SEEEAEKALWLEIANGWKDLNYEELLNLIAMPL-PLLG 514 (554)
Q Consensus 443 ~~i~RL~NDI~S~~kE~-----~rG~~~n~V~cyM~e~g~--S~EeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~-~~~~ 514 (554)
++..-+.||+..+.... ..|.. +...+|..+.+- ..+.|.+.+++.++++.+.+. .+|. +-++
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~--------~lp~~~~~~ 270 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE--------TFRECPARD 270 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT--------TSCCSHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH--------hCCCchHHH
Confidence 88888999988875432 23333 666677655431 144455555555555554444 3554 4455
Q ss_pred HHHHHhhh
Q 008767 515 PVLNLARM 522 (554)
Q Consensus 515 ~~~N~aR~ 522 (554)
...++++.
T Consensus 271 ~L~~l~~~ 278 (295)
T 3ipi_A 271 KLFQITDY 278 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666543
No 21
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=83.33 E-value=7.9 Score=39.96 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=67.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--hhcCCCCCHHHHHHhhchhHHHHHH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITAS 442 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~~~ 442 (554)
..+..+.+++...+.+-..+..|...+ ||.++|+++-..-+|.....+.-. +..| .+++..+.+ -.+-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 466778889999999999999997655 999999998766555553322211 1122 355544333 5567778
Q ss_pred HHHHHHhcCcCcchhh-----------hccCCCcchhhHHHhcC
Q 008767 443 ENICRLLDDVASHKFE-----------QKRGHIPSAVECYMKQH 475 (554)
Q Consensus 443 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyM~e~ 475 (554)
++..-+.||+..+.-. ...|.. +...+|.-+.
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8888899998877532 223443 6666665444
No 22
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=79.96 E-value=34 Score=34.88 Aligned_cols=89 Identities=10% Similarity=-0.132 Sum_probs=59.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHH
Q 008767 363 RSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIIT 440 (554)
Q Consensus 363 ~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~ 440 (554)
.+.++..+.++....+.|-+.+..|.. +.-||.++|+..-..-+|.....+ ...| ++ ..+++..+.+ -.+-+
T Consensus 149 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~ 222 (345)
T 3oyr_A 149 SMKALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSA-GVDVAKSEAL---RDYGL 222 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHH
Confidence 335667788888899999999988853 345899999998776666543322 2222 12 2355544333 56777
Q ss_pred HHHHHHHHhcCcCcchh
Q 008767 441 ASENICRLLDDVASHKF 457 (554)
Q Consensus 441 ~~~~i~RL~NDI~S~~k 457 (554)
..++..-+.||+..+.-
T Consensus 223 ~lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 223 NLGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhccC
Confidence 88888889999988754
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=77.29 E-value=50 Score=33.55 Aligned_cols=90 Identities=11% Similarity=-0.005 Sum_probs=58.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHH
Q 008767 362 GRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKII 439 (554)
Q Consensus 362 ~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~ 439 (554)
+.+..+..+.++....+.|-..+..|.. +..||.++|+..-..-+|.....+ ..+| ++ ..+++..+.+ -.+-
T Consensus 136 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g 209 (341)
T 3mzv_A 136 GNMRVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGGIIG-GAPEDQVQAL---FDYG 209 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHH
Confidence 3335666788888899999999999864 446899999987766555543322 2222 11 2355544332 5567
Q ss_pred HHHHHHHHHhcCcCcchh
Q 008767 440 TASENICRLLDDVASHKF 457 (554)
Q Consensus 440 ~~~~~i~RL~NDI~S~~k 457 (554)
+..++..-+.||+..+.-
T Consensus 210 ~~lG~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 210 DALGIAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 778888889999887743
No 24
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=76.78 E-value=33 Score=34.79 Aligned_cols=91 Identities=14% Similarity=-0.030 Sum_probs=60.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--hhcCCCCCHHHHHHhhchhHHH
Q 008767 362 GRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKII 439 (554)
Q Consensus 362 ~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~ 439 (554)
+.+.++..+.++....+.|-..+..|.. ...||.++|+..-..-+|.....+.-. +..| .+++..+.+ -.+-
T Consensus 130 ~~~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g 203 (334)
T 3rmg_A 130 NNYEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAFA---RLLG 203 (334)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHH
Confidence 3345677788889999999999998854 345899999998777666553322211 1122 355544333 5677
Q ss_pred HHHHHHHHHhcCcCcchhh
Q 008767 440 TASENICRLLDDVASHKFE 458 (554)
Q Consensus 440 ~~~~~i~RL~NDI~S~~kE 458 (554)
...++..-+.||+..+..+
T Consensus 204 ~~lG~aFQi~DD~ld~~~~ 222 (334)
T 3rmg_A 204 EYIGICFQIKDDIFDYFDS 222 (334)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhccCCCh
Confidence 7788888899999887643
No 25
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=74.76 E-value=31 Score=34.97 Aligned_cols=111 Identities=8% Similarity=0.004 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 008767 375 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDV 452 (554)
Q Consensus 375 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (554)
...+.|-..+..|... .||.++|+..-..-+|.... .....| ++...+++..+.+ ..+-+..++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~-~a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIR-ASVRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHH-HHHHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHH-HHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3467777777777543 78999999985554444432 222222 2222455544433 55677777888899998
Q ss_pred Ccchhh-----------hccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 453 ASHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 453 ~S~~kE-----------~~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
..+.-+ ...|.. +.+.+| ..|.|.+..++.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 877542 222333 555555 478899999998888887665
No 26
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=72.90 E-value=17 Score=36.36 Aligned_cols=109 Identities=9% Similarity=0.019 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh---cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcC
Q 008767 375 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD---MGDIATKEVFEWVLKVPKIITASENICRLLDD 451 (554)
Q Consensus 375 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~---~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 451 (554)
...+.|-..+..|... .+|.++|+..-..-+|.....+ ...| .| .+++..+.+ -.+-...++..-+.||
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DD 219 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFA-VMSAADIAN--VDDTTKEHL---ESYSYHLGMMFQIKDD 219 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 5567777777777543 7899999998776655543222 2221 23 455554433 5677778888889999
Q ss_pred cCcchhhh-----------ccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 452 VASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 452 I~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
+..+.-.. ..|.. +...+|- .+.|.+.+.+.++++.+.+.
T Consensus 220 ilD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~ 270 (301)
T 1rtr_A 220 LLDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELT 270 (301)
T ss_dssp HHHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 98875432 22332 5554443 57888888888888887766
No 27
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=69.10 E-value=37 Score=34.00 Aligned_cols=123 Identities=11% Similarity=0.015 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCc
Q 008767 377 VILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVAS 454 (554)
Q Consensus 377 ~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 454 (554)
.+.|-..+..|... .||.++|+..-..-+|..... ....| ++...+++..+.+ ..+-...++..-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~-~~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEA-SVILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHH-HHHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHH-HHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 66777777777543 489999998855444443222 22222 2222155544333 5567777888889999988
Q ss_pred chhhh-----------ccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhh
Q 008767 455 HKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLAR 521 (554)
Q Consensus 455 ~~kE~-----------~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR 521 (554)
+.-+. ..|.. +.+.+| ..+.|.+..++.++++.+.+. .+|. -++....++.
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~--------~l~~-~~~~L~~l~~ 289 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKP-TYPALL------GLAAAKEYALELRDQALHALR--------PFDA-AAEPLRELAR 289 (304)
T ss_dssp HHHHHHHC------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHTT--------TSCG-GGHHHHHHHH
T ss_pred ccCChHHhCCCcccHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH--------hCch-hHHHHHHHHH
Confidence 75431 22332 555555 478899999998888887766 3554 2445555554
No 28
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=68.68 E-value=27 Score=34.89 Aligned_cols=108 Identities=11% Similarity=0.017 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh---cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcC
Q 008767 375 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD---MGDIATKEVFEWVLKVPKIITASENICRLLDD 451 (554)
Q Consensus 375 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~---~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 451 (554)
...+.|-..+..|...+..||.++|+..-..-+|.....+ ...| .| .+++ ....+-...++..-+.||
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~-~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DD 217 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFA-AQAGAILAG--ADRG------PLTAYATALGLAFQIADD 217 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHH-HHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHH
Confidence 4577788888888766778999999997655444432221 1211 23 2222 124566777778889999
Q ss_pred cCcchhhh-----------ccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 452 VASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 452 I~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
+..+.-+. ..|.. +.+.++ ..+.|.+..++.++++...+.
T Consensus 218 ilD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 218 ILDVEGNEEAAGKRLGKDAEAHKA-TFVSLL------GLAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp CC---------------------C-CHHHHH------CSSHHHHHHHHHHHHHHHHTG
T ss_pred HHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99885432 22222 455444 357788888898888887766
No 29
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=67.80 E-value=22 Score=35.56 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhc--CCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 008767 375 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM--GDIATKEVFEWVLKVPKIITASENICRLLDDV 452 (554)
Q Consensus 375 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~--g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (554)
...+.|-..+..|. +..||.++|+..-..-+|.... .....|. +...+++..+. ...+-+..++..-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~-~~~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMR-CAIRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHH-HHHHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHH-HHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677888888885 4578999999986554444322 2222221 11122332222 245667777777899998
Q ss_pred Ccchhhh-----------ccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 453 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 453 ~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
..+.-+. ..|.. +...+| ..+.|.+.+++.++++.+.+.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 281 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALE 281 (302)
T ss_dssp HHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8775432 22332 555555 368888888888888887766
No 30
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=67.73 E-value=43 Score=33.66 Aligned_cols=113 Identities=7% Similarity=0.027 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhcCCC-CCHHHHHHhhchhHHHHHHHHHHHHhcCcC
Q 008767 375 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDI-ATKEVFEWVLKVPKIITASENICRLLDDVA 453 (554)
Q Consensus 375 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 453 (554)
...+.|-..+..|... ..||.++|+..-..-+|.....+.....++.. .+++..+.+ ..+-...++..-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567777777787533 37899999987655444432222222222322 566654443 567777788888999998
Q ss_pred cchhhh-----------ccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 454 SHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 454 S~~kE~-----------~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
.+.-+. ..|.. +.+.+| ..+.|.+.+++.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 775432 22332 444444 478899999999998887766
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=65.83 E-value=36 Score=34.56 Aligned_cols=110 Identities=14% Similarity=0.026 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--hhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 008767 375 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 452 (554)
Q Consensus 375 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (554)
...+.|-..+..|... .+|.++|+..-..-+|......... +..| .+++..+.+ -.+-...++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5567777778888654 6899999998777666543222111 1123 455554433 56777788888899999
Q ss_pred Ccchhhh-----------ccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 453 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 453 ~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
..+.-+. ..|.. +...+| ..|.|.+.+.+.++++.+.+.
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~ 314 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLA 314 (335)
T ss_dssp HHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTG
T ss_pred HHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8775422 22332 555444 268889999999998887776
No 32
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=65.31 E-value=47 Score=32.87 Aligned_cols=120 Identities=12% Similarity=0.004 Sum_probs=77.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHH--HhhcCCCCCHHHHHHhhchhHHHHHH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTAS--FLDMGDIATKEVFEWVLKVPKIITAS 442 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~e~~e~~~~~p~l~~~~ 442 (554)
.++..+.++....+.|-..+..|......||.++|+..-..-+|.....+.. -+..|. +++ ..-++-...
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~--~~~------~l~~~g~~l 205 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGX--DHT------XMXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--Chh------HHHHHHHHH
Confidence 3566677777889999999999976554789999999876655544322111 111232 222 124566777
Q ss_pred HHHHHHhcCcCcchhhh-ccCC-----C--cchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 443 ENICRLLDDVASHKFEQ-KRGH-----I--PSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 443 ~~i~RL~NDI~S~~kE~-~rG~-----~--~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
++..-+.||+..+.-.. ..|+ . .+...+| ..|.|.+.+.+.++++.+.+.
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 263 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIE 263 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 88888999998886532 2343 1 2344333 367889999999999888876
No 33
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=63.45 E-value=51 Score=33.35 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh---cCCCCCHHHHHHhhchhHHHHHH
Q 008767 366 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD---MGDIATKEVFEWVLKVPKIITAS 442 (554)
Q Consensus 366 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~---~g~~l~~e~~e~~~~~p~l~~~~ 442 (554)
++..+.++....+.|-..+..|.... ..|.++|++.-..-+|.....+ ...| .| .+++..+.+ -.+-...
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~l---~~~g~~l 210 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEAS-AKVGGIIGT--DNEEYIKAL---SSWGRNV 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 55667778888999999999996543 4599999998776555543322 2222 23 355544433 5677788
Q ss_pred HHHHHHhcCcCcchh
Q 008767 443 ENICRLLDDVASHKF 457 (554)
Q Consensus 443 ~~i~RL~NDI~S~~k 457 (554)
++..-+.||+..+.-
T Consensus 211 G~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 211 GIAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccC
Confidence 888889999988753
No 34
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=63.26 E-value=40 Score=33.70 Aligned_cols=109 Identities=16% Similarity=0.092 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcC
Q 008767 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVA 453 (554)
Q Consensus 376 ~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 453 (554)
..+.|-..+..|.. ..||.++|...-..-+|..... ....| ++ ..+++..+.+ ..+-+..++..-+.||+.
T Consensus 157 ~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~-~~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDil 229 (302)
T 3p8l_A 157 GMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEF-ALIAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDLL 229 (302)
T ss_dssp THHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHH-HHHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHH-HHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45667777777743 3689999998754444433222 22222 12 2355544333 567777788888999988
Q ss_pred cchhh-----------hccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 454 SHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 454 S~~kE-----------~~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
.+.-+ ...|.. +...++ ..+.|.+.+.+.++++.+.+.
T Consensus 230 D~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 278 (302)
T 3p8l_A 230 DATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLE 278 (302)
T ss_dssp HTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 77432 222332 444444 478899999999999888776
No 35
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=62.83 E-value=44 Score=33.69 Aligned_cols=110 Identities=8% Similarity=-0.006 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcC
Q 008767 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVA 453 (554)
Q Consensus 376 ~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 453 (554)
..+.|-..+..|. +..||.++|+..-..-+|..... ....| ++...+++..+.+ ..+-+..++..-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~-a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKA-SVRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHH-HHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566777777775 34589999998865544443222 22222 2222455544333 556777788888999988
Q ss_pred cchhhh-----------ccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 454 SHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 454 S~~kE~-----------~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
.+.-+. ..|.. +.+.+| ..|.|.+.+++.++++.+.+.
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 274 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQIS 274 (317)
T ss_dssp HTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHG
T ss_pred hccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 774322 22332 555555 368888888998888887766
No 36
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=62.62 E-value=78 Score=31.95 Aligned_cols=103 Identities=14% Similarity=0.035 Sum_probs=63.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhc--CCCCCHHHHHHhhchhHHHHHH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM--GDIATKEVFEWVLKVPKIITAS 442 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~--g~~l~~e~~e~~~~~p~l~~~~ 442 (554)
..+..+.++....+.|-+.+..|.. +.-||.++|++.-..-+|.... .....|+ + ..+++..+.+ -.+-+..
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~-~~~~~ga~la-g~~~~~~~~l---~~~g~~l 216 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFA-LSCYQGAQLA-GAPQSVIDRT---RDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHH-HHHHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHH-HHHHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 4566677888888889888888753 3568999999876555554422 2222221 2 1355544333 4566677
Q ss_pred HHHHHHhcCcCcchh-----------hhccCCCcchhhHHHhc
Q 008767 443 ENICRLLDDVASHKF-----------EQKRGHIPSAVECYMKQ 474 (554)
Q Consensus 443 ~~i~RL~NDI~S~~k-----------E~~rG~~~n~V~cyM~e 474 (554)
++..-+.||+..+.- ....|.. +...+|.-+
T Consensus 217 G~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 217 GCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 777788898877643 2344554 566566544
No 37
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=59.16 E-value=1.3e+02 Score=30.53 Aligned_cols=85 Identities=14% Similarity=0.008 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhc--CCCCCHHHHHHhhchhHHHHHHH
Q 008767 366 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM--GDIATKEVFEWVLKVPKIITASE 443 (554)
Q Consensus 366 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~--g~~l~~e~~e~~~~~p~l~~~~~ 443 (554)
++..+.++...++.|-..+..|... .-||.++|+.+-..-+|.....+ ..+|+ + ..+++..+.+ -.+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGAVLG-GADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 4566788888999999999999653 36899999997776666553322 22221 1 2355544433 56777788
Q ss_pred HHHHHhcCcCcch
Q 008767 444 NICRLLDDVASHK 456 (554)
Q Consensus 444 ~i~RL~NDI~S~~ 456 (554)
+..-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888999988764
No 38
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=56.42 E-value=79 Score=32.30 Aligned_cols=85 Identities=8% Similarity=0.009 Sum_probs=57.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh----------CCC-CCCHHHhhhhhhhccchHHHHHHHHhh---cCCCCCHHHHHH
Q 008767 366 GIPYAKQTMQEVILMYFTEAKWLK----------EGY-VPSVEEYKSVALRSIAVLPVVTASFLD---MGDIATKEVFEW 431 (554)
Q Consensus 366 ~~~~~~~~w~~~~~a~l~EA~W~~----------~g~-vPtleEYl~~~~~S~g~~~~~~~~~~~---~g~~l~~e~~e~ 431 (554)
++..+.++....+.|-..+..|.. .+. .||.++|+..-..-+|.....+ ..+| .| .+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~ 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAA-AKWGVLSVS--DDRGLAEA 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHH
Confidence 556788888899999999999962 233 6799999998766665543322 2222 22 34554333
Q ss_pred hhchhHHHHHHHHHHHHhcCcCcch
Q 008767 432 VLKVPKIITASENICRLLDDVASHK 456 (554)
Q Consensus 432 ~~~~p~l~~~~~~i~RL~NDI~S~~ 456 (554)
+ -.+-...++..-+.||+..+.
T Consensus 210 l---~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 210 A---WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHhc
Confidence 2 556777788888899988774
No 39
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=54.43 E-value=1.1e+02 Score=30.99 Aligned_cols=87 Identities=15% Similarity=0.012 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHH--HhhcCCCCCHHHHHHhhchhHHHHHH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTAS--FLDMGDIATKEVFEWVLKVPKIITAS 442 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~e~~e~~~~~p~l~~~~ 442 (554)
.++..+.++....+.|-..+..|... ..||.++|+..-..-+|.....+.. -+..| .+++..+.+ -.+-...
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 226 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVLA---FEYGRNL 226 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHH
Confidence 45667778888888888887776432 3579999999766555544322211 11122 355544332 4566777
Q ss_pred HHHHHHhcCcCcchh
Q 008767 443 ENICRLLDDVASHKF 457 (554)
Q Consensus 443 ~~i~RL~NDI~S~~k 457 (554)
++..-+.||+..+.-
T Consensus 227 G~aFQi~DD~lD~~g 241 (348)
T 3apz_A 227 GLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 888889999888754
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=49.36 E-value=1.2e+02 Score=30.04 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcC
Q 008767 374 MQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDD 451 (554)
Q Consensus 374 w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 451 (554)
....+.+-..+..|.. ..||.++|...-..-+|.....+ ...| ++ ..+++..+.+ ..+-+..++..-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAA-LKMGCEIC-ELNNEESNQI---YKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4456667666677743 46899999988655444443222 2222 12 2355543332 5677777888889999
Q ss_pred cCcchhh-hccCCCc-------chhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhh
Q 008767 452 VASHKFE-QKRGHIP-------SAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLAR 521 (554)
Q Consensus 452 I~S~~kE-~~rG~~~-------n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR 521 (554)
+..+.-. ...|+.. +.+.++ ..+.|.+..+++++++.+.+. .+|....+..-.+++
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~--------~~~~~~~~~l~~la~ 280 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE--------KLNEKLAQMIQNLII 280 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH--------TSCHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH--------HhchhHHHHHHHHHH
Confidence 9887643 2334432 222222 367888888888888877766 355543444445543
No 41
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=47.32 E-value=50 Score=33.12 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh---cCCCCCHHHH-HHhhchhHHHHHHHHHHHHhc
Q 008767 375 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD---MGDIATKEVF-EWVLKVPKIITASENICRLLD 450 (554)
Q Consensus 375 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~---~g~~l~~e~~-e~~~~~p~l~~~~~~i~RL~N 450 (554)
...+.|-..+..|. +..||.++|+..-..-+|.....+ ..+| .| .+++.. +.+ ..+-+..++..-+.|
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISAS-LIMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45667777777775 567899999987655444432221 1222 13 334433 332 557777788888999
Q ss_pred CcCcchhh-hccCCCcchhhHHHhcCCCC------HHHHHHHHHHHHHHHHHHhh
Q 008767 451 DVASHKFE-QKRGHIPSAVECYMKQHVVS------EEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 451 DI~S~~kE-~~rG~~~n~V~cyM~e~g~S------~EeA~~~i~~~i~~~wk~ln 498 (554)
|+..+.-+ ..-|+.... .+...| .+.|.+..+++++++.+.+.
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99887643 334543221 333343 58888888888888887766
No 42
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=46.89 E-value=89 Score=31.51 Aligned_cols=111 Identities=11% Similarity=-0.016 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 008767 375 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDV 452 (554)
Q Consensus 375 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (554)
...+.|-..+..|... ..||.++|...-..-+|.... .....| ++ ..+++..+.+ ..+-+..++..-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~-~a~~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIK-ASIMSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHH-HHHHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHH-HHHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3467777777887543 368999999985444443322 222222 12 2355544333 55677778888899998
Q ss_pred Ccchhhh-----------ccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 453 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 453 ~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
..+.-+. ..|.. +...+| ..+.|.+.+++.++++.+.+.
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~ 303 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILS 303 (324)
T ss_dssp HHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8774321 22332 444444 368899999999998887766
No 43
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=46.29 E-value=80 Score=31.61 Aligned_cols=109 Identities=11% Similarity=0.006 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcC
Q 008767 376 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVA 453 (554)
Q Consensus 376 ~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 453 (554)
..+.|-..+..|. +..||.++|...-..-+|.....+ ...| ++ ..+++..+. ...+-...++..-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYA-VQAGLILG-QAPEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4556666666774 346899999988555444432222 2222 12 134443332 2556677777778899988
Q ss_pred cchhh-----------hccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 454 SHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 454 S~~kE-----------~~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
.+.-. ...|.. +.+.+| ..+.|.+..+++++++.+.+.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 77432 222332 455444 357888888898888887766
No 44
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=44.62 E-value=9.7 Score=43.36 Aligned_cols=42 Identities=17% Similarity=0.472 Sum_probs=16.1
Q ss_pred CCCCCCCCccccccccCCccccchhhHHHHHHHHHHHHHHHh
Q 008767 20 AGFHPNLWGHHFLKSSFDFQTIDTTTQEQYDALKQEVRRMIT 61 (554)
Q Consensus 20 ~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 61 (554)
.+|+|++|++.++.+...+......+.++++.|+++||+||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 4 REFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 378999999999987544322234457889999999999995
No 45
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=41.94 E-value=42 Score=33.29 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhCC-CCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 008767 376 EVILMYFTEAKWLKEG-YVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDV 452 (554)
Q Consensus 376 ~~~~a~l~EA~W~~~g-~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (554)
..+.|-..+..|...+ ..+|.++|+..-..-+|..... ....| ++. .+++..+.+ -.+-...++..-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~-a~~~ga~lag-~~~~~~~~l---~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEA-SAVLGGIIGG-GSDEEIERL---RKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHH-HHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHH-HHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3556666666664321 2468899998754434433221 11222 121 355554433 56677778888899999
Q ss_pred CcchhhhccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 453 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 453 ~S~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
..+..+. -.+...+| ..|.|.+.+.+.++++.+.+.
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 271 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLL 271 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8876543 23555444 467888888888888887766
No 46
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=41.71 E-value=1e+02 Score=30.60 Aligned_cols=110 Identities=12% Similarity=0.006 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhhc---CCCCCHHHHHHhhchhHHHHHHHHHHHHhcC
Q 008767 375 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM---GDIATKEVFEWVLKVPKIITASENICRLLDD 451 (554)
Q Consensus 375 ~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~~---g~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 451 (554)
...+.|-..+..|... .+|.++|+..-..-+|.... .....|. + ..+++..+. .-.+-...++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~-~~~~~ga~l~a-g~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIR-AAVRLGALSAG-DKGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHH-HHHHHHHHTTT-HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHhC-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3567777777787543 78999999987655554422 2222221 1 123443333 35567777888889999
Q ss_pred cCcchhhh-----------ccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 452 VASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 452 I~S~~kE~-----------~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
+..+.-+. ..|.. +...+|- .+.|.+.+++.++++.+.+.
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~~------l~~a~~~~~~~~~~A~~~L~ 275 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKS-TYPALLG------LEQARKKARDLIDDARQSLK 275 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCC-CHHHHHC------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 88875432 22332 4554442 47788889999998888876
No 47
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=40.33 E-value=21 Score=26.23 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHh
Q 008767 47 EQYDALKQEVRRMITSAVDEISHKLHLIDAVQRL 80 (554)
Q Consensus 47 ~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrL 80 (554)
+++.=|.+|||+-|.. +.++++++-++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~-TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKI-TENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCC-CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHH
Confidence 4556677888888875 67899999999998864
No 48
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=38.89 E-value=87 Score=31.48 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=56.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH-hhCCCCCCHHHhhhhhhhccchH-HHHH--HHHhhcCCCCCHHHHHHhhchhHHHH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKW-LKEGYVPSVEEYKSVALRSIAVL-PVVT--ASFLDMGDIATKEVFEWVLKVPKIIT 440 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W-~~~g~vPtleEYl~~~~~S~g~~-~~~~--~~~~~~g~~l~~e~~e~~~~~p~l~~ 440 (554)
..+..+.++....+.|-..+..| ...+.-||.++|+..-..-+|.. ...+ ..-+..|. +++.. .-.+-.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~ 202 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHH
Confidence 35666788889999999999999 65435689999998876655544 2221 11122232 22321 255667
Q ss_pred HHHHHHHHhcCcCcch
Q 008767 441 ASENICRLLDDVASHK 456 (554)
Q Consensus 441 ~~~~i~RL~NDI~S~~ 456 (554)
..++..-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 7788888899988775
No 49
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=35.41 E-value=1.7e+02 Score=29.99 Aligned_cols=89 Identities=16% Similarity=0.041 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHhhhhhhhccchH-HH--HHHHHhhcCCCCCHHHHHHhhchhH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGY----VPSVEEYKSVALRSIAVL-PV--VTASFLDMGDIATKEVFEWVLKVPK 437 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~----vPtleEYl~~~~~S~g~~-~~--~~~~~~~~g~~l~~e~~e~~~~~p~ 437 (554)
.++..+.+.....+.|-+.+..|...+. .||+++|+..-..-+|.. .. +...-+..| ..+++..+.+ -.
T Consensus 176 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~l---~~ 251 (374)
T 2qis_A 176 NLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHANA---KK 251 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHHH---HH
Confidence 3566677888888999999999976544 389999999877655554 21 122222223 1355554433 56
Q ss_pred HHHHHHHHHHHhcCcCcchh
Q 008767 438 IITASENICRLLDDVASHKF 457 (554)
Q Consensus 438 l~~~~~~i~RL~NDI~S~~k 457 (554)
+-...++..-+.||+..+.-
T Consensus 252 ~g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 252 ILLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 77788888889999987753
No 50
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=35.19 E-value=1.5e+02 Score=30.22 Aligned_cols=89 Identities=19% Similarity=0.034 Sum_probs=58.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHhhhhhhhccchH-HH--HHHHHhhcCCCCCHHHHHHhhchhH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGY----VPSVEEYKSVALRSIAVL-PV--VTASFLDMGDIATKEVFEWVLKVPK 437 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~----vPtleEYl~~~~~S~g~~-~~--~~~~~~~~g~~l~~e~~e~~~~~p~ 437 (554)
.++..+.+.....+.|-+.+..|...+. .+|.++|+..-..-+|.. .. +...-+..|. .+++..+.+ -.
T Consensus 169 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~l---~~ 244 (367)
T 1uby_A 169 HLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHENA---KA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHHH---HH
Confidence 3556677788888999999999976553 579999999877655554 21 1222222231 345544333 56
Q ss_pred HHHHHHHHHHHhcCcCcchh
Q 008767 438 IITASENICRLLDDVASHKF 457 (554)
Q Consensus 438 l~~~~~~i~RL~NDI~S~~k 457 (554)
+-...++..-+.||+..+.-
T Consensus 245 ~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77788888889999887753
No 51
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=35.06 E-value=1.6e+02 Score=28.97 Aligned_cols=115 Identities=9% Similarity=-0.016 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHH
Q 008767 366 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASE 443 (554)
Q Consensus 366 ~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~ 443 (554)
.+..+.++....+.|-..+..| .++|++.-..-+|.....+ ...| ++ .+++..+.+ -.+-...+
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a-~~~ga~la--~~~~~~~~l---~~~g~~lG 201 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLS-TVLSAYAS--KHYNTKQQM---LDVGKYLG 201 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHH-HHHHHHHT--TCGGGHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHH-HHHHHHHc--CCHHHHHHH---HHHHHHHH
Confidence 4556667777777776655543 6888887666555443222 2222 23 344443332 45667777
Q ss_pred HHHHHhcCcCcchhh----hccCCCcchhhHHHhcCCCCHHHH-HHHHHHHHHHHHHHhh
Q 008767 444 NICRLLDDVASHKFE----QKRGHIPSAVECYMKQHVVSEEEA-EKALWLEIANGWKDLN 498 (554)
Q Consensus 444 ~i~RL~NDI~S~~kE----~~rG~~~n~V~cyM~e~g~S~EeA-~~~i~~~i~~~wk~ln 498 (554)
+..-+.||+..+.-+ ...|. .+...+| . ..+.++| ...+.+.++++.+.+.
T Consensus 202 ~aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~ 257 (289)
T 2azj_A 202 IIYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELIS 257 (289)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 778889998877432 22232 3666666 3 3345677 4456677777766655
No 52
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=28.36 E-value=3.8e+02 Score=27.30 Aligned_cols=89 Identities=9% Similarity=-0.030 Sum_probs=54.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCH-HHhhhhhhhccchH-H--HHHHHHhhcCCCCCHHHHHHhhchhHHHH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSV-EEYKSVALRSIAVL-P--VVTASFLDMGDIATKEVFEWVLKVPKIIT 440 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtl-eEYl~~~~~S~g~~-~--~~~~~~~~~g~~l~~e~~e~~~~~p~l~~ 440 (554)
.++..+.++....+.|-..+..|...|..+++ ++|+.+-..-+|.. . .+.+.-+..|. +++. +.+.....+-.
T Consensus 168 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~-~~~~~l~~~g~ 244 (368)
T 2her_A 168 KIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSS-AQLNLIEAILY 244 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCC-SSTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhH-HHHHHHHHHHH
Confidence 34566778888899999988888766634455 99998766655544 1 11222222342 2221 00112355677
Q ss_pred HHHHHHHHhcCcCcch
Q 008767 441 ASENICRLLDDVASHK 456 (554)
Q Consensus 441 ~~~~i~RL~NDI~S~~ 456 (554)
..++..-+.||+..+.
T Consensus 245 ~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 245 KLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888999988775
No 53
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.86 E-value=1.2e+02 Score=24.46 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=42.3
Q ss_pred hchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cCCCCCChhhHHHHHHHhhhcCcccchhhhh
Q 008767 65 DEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LGSDSDNLYTVSLRFRLLRQQRVKISCDVFE 131 (554)
Q Consensus 65 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~ 131 (554)
+..+..=++...+.++|++ ++|++++++.+-.. +.....+=...+|.-.-+.|+|+.++.+.+.
T Consensus 25 dG~Is~~el~~~l~~~~l~---~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~~~~~~l~ 89 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLP---DLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLSSLS 89 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSC---HHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSSGGGCS
T ss_pred CCcCCHHHHHHHHHHcCCC---HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCCCCChhhcc
Confidence 3456666788888999976 67877777654221 1111223455677777889999999977654
No 54
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=27.73 E-value=2.5e+02 Score=27.67 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=58.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--hhcCCCCCHHHHHHhhchhHHHH
Q 008767 363 RSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIIT 440 (554)
Q Consensus 363 ~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~ 440 (554)
.+.....+.+.+...+.|-..+..|......||.++|+.+-..-+|.....+... ...|. ++ ..-.+-.
T Consensus 109 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~--~~-------~l~~~g~ 179 (301)
T 2q80_A 109 HPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDY--KE-------DLKPLLN 179 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CS-------CCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCC--hH-------HHHHHHH
Confidence 3355666888899999999999999876668999999998777555443322211 11222 21 1245667
Q ss_pred HHHHHHHHhcCcCcchh
Q 008767 441 ASENICRLLDDVASHKF 457 (554)
Q Consensus 441 ~~~~i~RL~NDI~S~~k 457 (554)
..++..-+.||+..+.-
T Consensus 180 ~lG~aFQi~DD~ld~~~ 196 (301)
T 2q80_A 180 TLGLFFQIRDDYANLHS 196 (301)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 77888889999887643
No 55
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=26.76 E-value=2.5e+02 Score=27.65 Aligned_cols=86 Identities=13% Similarity=0.008 Sum_probs=55.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHH--HHhhcCCCCCHHHHHHhhchhHHHH
Q 008767 363 RSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTA--SFLDMGDIATKEVFEWVLKVPKIIT 440 (554)
Q Consensus 363 ~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~--~~~~~g~~l~~e~~e~~~~~p~l~~ 440 (554)
.+..+..+.++....+.|-..+..|.... ||.++|+..-..-+|.....+. .-+..|.. ++. + -.+-.
T Consensus 125 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~~---l---~~~g~ 194 (299)
T 1v4e_A 125 NNKLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGEL--GED---L---YNLGV 194 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCC--CHH---H---HHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCC--HHH---H---HHHHH
Confidence 33566778888899999999999997654 9999999887765555432211 11112322 121 2 34566
Q ss_pred HHHHHHHHhcCcCcchhh
Q 008767 441 ASENICRLLDDVASHKFE 458 (554)
Q Consensus 441 ~~~~i~RL~NDI~S~~kE 458 (554)
..++..-+.||+..+.-+
T Consensus 195 ~lG~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 195 TIGTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccCc
Confidence 677777788888776543
No 56
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=26.68 E-value=1.5e+02 Score=30.07 Aligned_cols=106 Identities=8% Similarity=-0.030 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh-----------hCCC----CCCHHHhhhhhhhccchH-HH--HHHHHhhcCCCCCH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWL-----------KEGY----VPSVEEYKSVALRSIAVL-PV--VTASFLDMGDIATK 426 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~-----------~~g~----vPtleEYl~~~~~S~g~~-~~--~~~~~~~~g~~l~~ 426 (554)
.++..+.++....+.|-..+..|. ..|. .||.++|+..-..-+|.. .. +...-+..| ..++
T Consensus 151 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~ 229 (362)
T 1yhl_A 151 DLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCH
Confidence 356667788888999999999887 3223 489999999877655544 22 112222223 1233
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhcCcCcchhh----------hccCCCcchhhHHHhcC
Q 008767 427 EVFEWVLKVPKIITASENICRLLDDVASHKFE----------QKRGHIPSAVECYMKQH 475 (554)
Q Consensus 427 e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE----------~~rG~~~n~V~cyM~e~ 475 (554)
+..+. .-.+-...++..-+.||+..+.-. ...|.. +...+|.-++
T Consensus 230 ~~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~ 284 (362)
T 1yhl_A 230 VEMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGK 284 (362)
T ss_dssp SCHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTT
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHh
Confidence 32222 245677778888899998877532 223443 5665665544
No 57
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=26.47 E-value=1.1e+02 Score=30.78 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHhhhhhhhccchHHHHHHHH--hhcCCCCCHHHHHHhhchhHHHHH
Q 008767 366 GIPYAKQTMQEVILMYFTEAKWLKEG--YVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITA 441 (554)
Q Consensus 366 ~~~~~~~~w~~~~~a~l~EA~W~~~g--~vPtleEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~l~~~ 441 (554)
.+..+.+....++.|-..+..|.... ..||.++|+.+-..-+|.....+... ...|. +++ . ...-.+-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPS--SHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC--cHH-H---HHHHHHHHH
Confidence 55567778888999999999998755 57899999998777665443322211 11222 221 1 233567788
Q ss_pred HHHHHHHhcCcCcchh
Q 008767 442 SENICRLLDDVASHKF 457 (554)
Q Consensus 442 ~~~i~RL~NDI~S~~k 457 (554)
.++..-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888899999987753
No 58
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=25.47 E-value=1.7e+02 Score=29.19 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=58.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITAS 442 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~ 442 (554)
..+..+.++....+.|-..+..|... ..||.++|+..-..-+|.....+ ...| ++ ..+++..+.+ -.+-...
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~l 203 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEAS-CHLGALSS-QLDEQSTYHI---KQFGHCI 203 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 45667778888899999999998653 35899999998777665553322 2222 12 2455544333 5677778
Q ss_pred HHHHHHhcCcCcchh
Q 008767 443 ENICRLLDDVASHKF 457 (554)
Q Consensus 443 ~~i~RL~NDI~S~~k 457 (554)
++..-+.||+..+.-
T Consensus 204 G~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 204 GMSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccC
Confidence 888889999887753
No 59
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.63 E-value=1.9e+02 Score=22.64 Aligned_cols=59 Identities=7% Similarity=0.099 Sum_probs=34.4
Q ss_pred hchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhccCCC---CCChhhHHHHHHHhh-hcCcccchh
Q 008767 65 DEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSD---SDNLYTVSLRFRLLR-QQRVKISCD 128 (554)
Q Consensus 65 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~---~~dl~~~al~FRlLR-~~Gy~vS~d 128 (554)
+..+..=++...+.++|+. ++|+++++..+=. +.+. ..+. ..+|.-.-.+ +.|+.++..
T Consensus 24 dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~-d~dG~i~~~EF-~~~~~~~~~~~~~g~~lP~~ 86 (95)
T 1c07_A 24 DGFVSGLEVREIFLKTGLP---STLLAHIWSLCDT-KDCGKLSKDQF-ALAFHLISQKLIKGIDPPHV 86 (95)
T ss_dssp SSEECHHHHHHHHHTTTCC---HHHHHHHHHHHCT-TCSSSEETTTH-HHHHHHHHHHHTSCCCCCSS
T ss_pred CCcEeHHHHHHHHHHcCCC---HHHHHHHHHHHCC-CCCCcCCHHHH-HHHHHHHHHHHHcCCCCCCc
Confidence 4456667788889999976 6778777655421 1111 1232 2333333334 789888763
No 60
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=22.47 E-value=1e+02 Score=30.18 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCc
Q 008767 377 VILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVAS 454 (554)
Q Consensus 377 ~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 454 (554)
.+.|-..+..|..+ .||.++|+..-..-+|.....+ ..+| ++ ..+++..+.+ ..+-+..++..-+.||+..
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a-~~lGaila-ga~~~~~~~l---~~~G~~lG~aFQI~DD~~~ 223 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACG-AACGAILG-GAAEEEIQKL---RNFGLYQGTLRGMMEMKNS 223 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHTTT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHhhcc
Confidence 45666666666433 7899999986555444433222 2222 12 2455544433 5677777888889999711
Q ss_pred chhhhccCCCcchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 008767 455 HKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 498 (554)
Q Consensus 455 ~~kE~~rG~~~n~V~cyM~e~g~S~EeA~~~i~~~i~~~wk~ln 498 (554)
.+|++.+.+.++.+.+-+.+.
T Consensus 224 -----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 224 -----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp -----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 124555666666666666654
No 61
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.94 E-value=1e+02 Score=24.14 Aligned_cols=72 Identities=6% Similarity=-0.026 Sum_probs=40.4
Q ss_pred HHHHHHHHhhc---hhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhccCCCCCChh--hHHHHHHHhhhcCcccch
Q 008767 53 KQEVRRMITSA---VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLY--TVSLRFRLLRQQRVKISC 127 (554)
Q Consensus 53 k~~v~~~l~~~---~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~--~~al~FRlLR~~Gy~vS~ 127 (554)
+++.++.|..- .+..+..=++...+.++|++ ++|+++++..+=. +.+..-|.. ..+|.-.-.++.|+.+++
T Consensus 8 ~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~-d~dG~i~~~EF~~~~~~~~~~~~g~~lp~ 83 (92)
T 1fi6_A 8 RQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP---ILELSHIWELSDF-DKDGALTLDEFCAAFHLVVARKNGYDLPE 83 (92)
T ss_dssp HHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSC---HHHHHHHHHHHCT-TCSSEEEHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC---HHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 34556666432 23456667788889999976 6777776654411 111111322 233333345678988876
Q ss_pred h
Q 008767 128 D 128 (554)
Q Consensus 128 d 128 (554)
.
T Consensus 84 ~ 84 (92)
T 1fi6_A 84 K 84 (92)
T ss_dssp C
T ss_pred c
Confidence 4
No 62
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=21.78 E-value=4.8e+02 Score=26.59 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=51.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCC-----------------------CCCCHHHhhhhhhhccchH---HHHHHHHhh
Q 008767 366 GIPYAKQTMQEVILMYFTEAKWLKEG-----------------------YVPSVEEYKSVALRSIAVL---PVVTASFLD 419 (554)
Q Consensus 366 ~~~~~~~~w~~~~~a~l~EA~W~~~g-----------------------~vPtleEYl~~~~~S~g~~---~~~~~~~~~ 419 (554)
++..+.++....+.|-..+..|.... ..+|+++|+++-..=+|.. ..+....+.
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ 258 (395)
T 3mav_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44556666677777777776664321 2358999998766644433 112222233
Q ss_pred cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcch
Q 008767 420 MGDIATKEVFEWVLKVPKIITASENICRLLDDVASHK 456 (554)
Q Consensus 420 ~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~ 456 (554)
.|...++...+.+ ..+-...++..-+.||+..+.
T Consensus 259 ag~~~d~~~~~~l---~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 259 AGIAVDNLIYKKI---EDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp TTCCTTCTHHHHH---HHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcchhHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 3444444443333 456667777888899987753
No 63
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=21.77 E-value=71 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 008767 475 HVVSEEEAEKALWLEIANGWKDL 497 (554)
Q Consensus 475 ~g~S~EeA~~~i~~~i~~~wk~l 497 (554)
||++.+||+..+.+.+.+++..+
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888644
No 64
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=21.45 E-value=6.2e+02 Score=25.28 Aligned_cols=246 Identities=10% Similarity=0.027 Sum_probs=117.3
Q ss_pred ChhhHHHHHHH---HHHHhhccccCCCccchhHHHHHHHHHHHhhhhccccCC-CHH----HHHHHHHHhhh--cCCCCc
Q 008767 264 LPYARDRMVEV---YFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYG-TFE----ELTLFTEAVKR--WDTNVT 333 (554)
Q Consensus 264 l~faRdr~ve~---yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~iiDD~fD~~g-t~e----El~~ft~ai~r--Wd~~~~ 333 (554)
+.++++.+... |+.+. ....| ..|-.+.-+-.|.=.+||+-|... +.+ .|+.|-+.+.. |....
T Consensus 13 ~~~C~~~l~~~srsF~la~--~lLp~---~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~- 86 (343)
T 3vj8_A 13 LKTCYKYLNQTSRSFAAVI--QALDG---EMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME- 86 (343)
T ss_dssp HHHHHHHHHHHHGGGHHHH--HTCCT---THHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC-
T ss_pred HHHHHHHHHhcCCcHHHHH--HhCCH---HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC-
Confidence 34555544332 44444 33323 345544557778888999999754 443 35566666553 33221
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHH
Q 008767 334 DTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVV 413 (554)
Q Consensus 334 ~~lPe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~ 413 (554)
.-|.. +.++..+-.+...+. .-.. ....-..+....++.++. .+.. ..++|++|+...-..+.|+--.+
T Consensus 87 -~~~~~-~~ll~~~p~v~~~f~----~l~~-~~~~~i~~~~~~m~~gm~---~dl~-~~~~t~~~L~~Yc~~vAg~VG~l 155 (343)
T 3vj8_A 87 -SKEKD-RQVLEDFPTISLEFR----NLAE-KYQTVIADICRRMGIGMA---EFLD-KHVTSEQEWDKYCHYVAGLVGIG 155 (343)
T ss_dssp -CCSTT-THHHHTHHHHHHHHH----HSCH-HHHHHHHHHHHHHHHHHH---HGGG-CCCCSHHHHHHHHHHHTHHHHHH
T ss_pred -CChhh-HHHHhcCcHHHHHHH----HhHH-HHHHHHHHHHHHHHHHHH---Hhcc-CCCCCHHHHHHHHHhCcHHHHHH
Confidence 11221 122211111111111 0000 001112222334444443 2333 56789999988888887776666
Q ss_pred HHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcCcchhhhccCCCcchh-hHHHhcCCCCHH---------HHH
Q 008767 414 TASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAV-ECYMKQHVVSEE---------EAE 483 (554)
Q Consensus 414 ~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V-~cyM~e~g~S~E---------eA~ 483 (554)
++-.++....-++. .+ .........+...-+.|=|........+|-+ .+ .=.|.++|++.+ .+.
T Consensus 156 ~~~l~~~~~~~~~~-~~---~~~~~A~~lG~AlQltNilRDv~eD~~~gR~--YlP~e~l~~~g~~~~dl~~~~~~~~~~ 229 (343)
T 3vj8_A 156 LSRLFSASEFEDPL-VG---EDTERANSMGLFLQKTNIIRDYLEDQQGGRE--FWPQEVWSRYVKKLGDFAKPENIDLAV 229 (343)
T ss_dssp HHHHHHHHTSSCHH-HH---HCHHHHHHHHHHHHHHHHHHTHHHHHHTTCC--CSCHHHHTTTCSSGGGGGSGGGHHHHH
T ss_pred HHHHhCCCCCccch-hh---hHHHHHHHHHHHHHHHHHHHHhHHHHhCCCe--eCCHHHHHHcCCCHHHHhcccCCHHHH
Confidence 65566543221111 11 1123344445555555555555566667754 22 235677888764 345
Q ss_pred HHHHHHHHHHHHHhhHHHhhccCCCChh-----HHHHHHHHhh-hhhhccccCCCCCC
Q 008767 484 KALWLEIANGWKDLNYEELLNLIAMPLP-----LLGPVLNLAR-MSEFIYEDGVDRYT 535 (554)
Q Consensus 484 ~~i~~~i~~~wk~ln~~e~l~~~~~p~~-----~~~~~~N~aR-~~~~~Y~~~~D~~t 535 (554)
.-+..++..+..-+. +..--...+|.. |.-. +-+|. .+.-+|++. |-|.
T Consensus 230 ~~l~~l~~~A~~~~~-~a~~~~~~L~~~~~~~~~~ip-~~lA~~tL~~i~~~~-~v~~ 284 (343)
T 3vj8_A 230 QCLNELITNALHHIP-DVITYLSRLRNQSVFNFCAIP-QVMAIATLAACYNNQ-QVFK 284 (343)
T ss_dssp HHHHHHHHHHHTTHH-HHHHHHHTCCCHHHHHHHHHH-HHHHHHHHHHHTTCG-GGGT
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhCCccchhhHHHHH-HHHHHHHHHHHHhCC-cccc
Confidence 556777777665543 322112346653 2111 22222 445557666 6553
No 65
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=20.90 E-value=6.7e+02 Score=25.48 Aligned_cols=77 Identities=17% Similarity=0.006 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHH-H--HHHHHhhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhc
Q 008767 374 MQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLP-V--VTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLD 450 (554)
Q Consensus 374 w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~-~--~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~N 450 (554)
....+.|-+.+..|...+ .||.++|+.+-..-+|... . +...-+..| .+++..+.+ -.+-+..++..-+.|
T Consensus 184 ~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~l---~~~G~~lG~AFQI~D 257 (380)
T 3lk5_A 184 RTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDAL---LHYGHDIGIAFQLRD 257 (380)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHH
Confidence 346777888888886644 6799999997666555541 1 111112223 345544333 567777888888999
Q ss_pred CcCcch
Q 008767 451 DVASHK 456 (554)
Q Consensus 451 DI~S~~ 456 (554)
|+..+-
T Consensus 258 DiLd~~ 263 (380)
T 3lk5_A 258 DLLGVF 263 (380)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 988774
No 66
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.13 E-value=88 Score=27.20 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHhhccccCCC------ccchhHHHHHHHHHHHhhhhccc
Q 008767 243 AHQKELSDMTRWWKDLDIPTKLP-YARDRMVEVYFWTLVGVYCEPK------YTFGRILVSKIICLISLIDDTFD 310 (554)
Q Consensus 243 ~hq~El~~lsrWwk~~~l~~~l~-faRdr~ve~yf~~~~a~~~eP~------~s~~Rl~~aK~~~l~~iiDD~fD 310 (554)
+.-+|++++.+|..++.|..... ..|| +...|.-|-.--.|.|+ |+.+.-.-+|...|-++=--+|-
T Consensus 12 l~~ee~~el~~WL~~l~Ls~~~rn~rRD-FSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~ 85 (127)
T 2ee7_A 12 VDEEALHQLYLWVDNIPLSRPKRNLSRD-FSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLK 85 (127)
T ss_dssp CCHHHHHHHHHHHHHSCCSCCSSCHHHH-HTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCchhhh-ccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHH
Confidence 45689999999999999964333 5555 54444444201223355 55555566777788765445554
No 67
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=20.10 E-value=6.4e+02 Score=24.90 Aligned_cols=83 Identities=5% Similarity=-0.109 Sum_probs=54.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHhh---cCCCCCHHHHHHhhchhHHHHH
Q 008767 365 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD---MGDIATKEVFEWVLKVPKIITA 441 (554)
Q Consensus 365 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~vPtleEYl~~~~~S~g~~~~~~~~~~~---~g~~l~~e~~e~~~~~p~l~~~ 441 (554)
.++..+.++....+.|-..+..|.. +.-||.++|+..-..-+|.....+ ...| .|.. .+ ....+-..
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag~~--~~------~l~~~g~~ 191 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEAS-LKSMAILLNKD--AK------IYADFGLN 191 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTSC--HH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcCCC--HH------HHHHHHHH
Confidence 4566777888899999999999964 356899999987666555443222 2222 2332 11 22456677
Q ss_pred HHHHHHHhcCcCcchh
Q 008767 442 SENICRLLDDVASHKF 457 (554)
Q Consensus 442 ~~~i~RL~NDI~S~~k 457 (554)
.++..-+.||+..+.-
T Consensus 192 lG~aFQI~DD~ld~~~ 207 (315)
T 3tc1_A 192 FGMAFQIIDDLLDITQ 207 (315)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcccC
Confidence 7788888998877643
Done!