BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>008769
MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC
RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGS
VPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE
VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ
EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN
LCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNS
FKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRR
MASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIAR
ALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQK
WAMKLKDLDINWVE

High Scoring Gene Products

Symbol, full name Information P value
AT5G08720 protein from Arabidopsis thaliana 1.6e-189
AT4G01650 protein from Arabidopsis thaliana 9.7e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  008769
        (554 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956340 - symbol:AT5G08720 "AT5G08720" speci...  1837  1.6e-189  1
TAIR|locus:2133442 - symbol:AT4G01650 "AT4G01650" species...   191  9.7e-13   1


>TAIR|locus:504956340 [details] [associations]
            symbol:AT5G08720 "AT5G08720" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] Pfam:PF03364 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.530.20
            InterPro:IPR023393 EMBL:AL590346 InterPro:IPR005031 EMBL:BT005959
            EMBL:AK117869 IPI:IPI00531129 RefSeq:NP_680157.1 UniGene:At.45652
            SMR:Q9C5A5 IntAct:Q9C5A5 STRING:Q9C5A5 EnsemblPlants:AT5G08720.1
            GeneID:830772 KEGG:ath:AT5G08720 TAIR:At5g08720 eggNOG:NOG86694
            HOGENOM:HOG000030841 InParanoid:Q9C5A5 OMA:AITRMGG
            ProtClustDB:CLSN2690141 Genevestigator:Q9C5A5 Uniprot:Q9C5A5
        Length = 719

 Score = 1837 (651.7 bits), Expect = 1.6e-189, P = 1.6e-189
 Identities = 370/559 (66%), Positives = 430/559 (76%)

Query:     1 MVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 60
             MVDGDFKKFEGKWS+KSG RS  T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+A+A 
Sbjct:   182 MVDGDFKKFEGKWSVKSGIRSVGTVLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRAVAR 241

Query:    61 RAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIXXXXXXX 120
             +AE+ +    K  +I++  G +S     S  ++FD    E+  A                
Sbjct:   242 QAEKIYKDCGKPSIIEDLLGIISSQPAPSNGIEFDSLATERSVA------------SSVG 289

Query:   121 XXXXXXDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE 180
                   +LN+ WGV+G+ C+LD+PC VDEVHLRRFDGLLENGGVHRC VASITVKAPV E
Sbjct:   290 SLAHSNELNNNWGVYGKACKLDKPCTVDEVHLRRFDGLLENGGVHRCAVASITVKAPVCE 349

Query:   181 VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 240
             VW V+T+YE+LPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHAR V+D+ E  EQ
Sbjct:   350 VWKVLTSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARAVLDLHEIREQ 409

Query:   241 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN 300
             EI FEQVEGDFDS +GKW+FEQLGSHHTLLKY+VESKM+K+S LSEAIMEEVIYEDLPSN
Sbjct:   410 EIRFEQVEGDFDSLEGKWIFEQLGSHHTLLKYTVESKMRKDSFLSEAIMEEVIYEDLPSN 469

Query:   301 LCAIRDYVEKREGDNSLANDSVETTNHXXXXXXXXXXXXXXXXXXXXDNEDLVDSETPNS 360
             LCAIRDY+EKR G+ S  +  +ET                       +N+D  D +T   
Sbjct:   470 LCAIRDYIEKR-GEKSSESCKLETCQ---VSEETCSSSRAKSVETVYNNDDGSD-QT--- 521

Query:   361 FKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRR 420
              KQR R+PGLQ +IEVLK+E+L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR
Sbjct:   522 -KQRRRIPGLQRDIEVLKSEILKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRR 580

Query:   421 MASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIAR 480
             +A +MNL+LAYKHRKPKGYWDNLENL+EEI RFQ+SWGMDPSFMPSRKSFERAGRYDIAR
Sbjct:   581 IALMMNLSLAYKHRKPKGYWDNLENLQEEIGRFQQSWGMDPSFMPSRKSFERAGRYDIAR 640

Query:   481 ALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDK-----KVDYVDPANLECEGKIPSKPYVS 535
             ALEKWGGLHEVSRLL+L +RHPNR+ +  KD      + +  + A+L       +KPYVS
Sbjct:   641 ALEKWGGLHEVSRLLALNVRHPNRQLNSRKDNGNTILRTESTE-ADLNSTVNKNNKPYVS 699

Query:   536 QDTQKWAMKLKDLDINWVE 554
             QDT+KW   LKDLDINWV+
Sbjct:   700 QDTEKWLYNLKDLDINWVQ 718

 Score = 196 (74.1 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 52/151 (34%), Positives = 77/151 (50%)

Query:   166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAIS-KILSRENNKVRILQEGCKGLLYM 224
             R +   I V +    VWNV+T YE L + +PNL  S +I      ++ + Q G +  LY 
Sbjct:    97 RRIRGEIWVDSDSQSVWNVLTDYERLADFIPNLVWSGRIPCPHPGRIWLEQRGLQRALYW 156

Query:   225 VLHARVVMDICE----QHEQEISFEQVEGDFDSFQGKWLFEQ-LGSHHTLLKYSVESKMQ 279
              + ARVV+D+ E     + +E+ F  V+GDF  F+GKW  +  + S  T+L Y V    +
Sbjct:   157 HIEARVVLDLHECLDSPNGRELHFSMVDGDFKKFEGKWSVKSGIRSVGTVLSYEVNVIPR 216

Query:   280 KNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 310
              N       +E +I  DLP NL A+    EK
Sbjct:   217 FN--FPAIFLERIIRSDLPVNLRAVARQAEK 245


>TAIR|locus:2133442 [details] [associations]
            symbol:AT4G01650 "AT4G01650" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            Pfam:PF03364 GO:GO:0009507 EMBL:CP002687 Gene3D:3.30.530.20
            InterPro:IPR023393 EMBL:AL161492 InterPro:IPR005031 IPI:IPI00525114
            PIR:C85021 RefSeq:NP_192074.1 UniGene:At.34395
            ProteinModelPortal:Q9M120 STRING:Q9M120 PRIDE:Q9M120
            EnsemblPlants:AT4G01650.1 GeneID:828138 KEGG:ath:AT4G01650
            TAIR:At4g01650 InParanoid:Q9M120 OMA:SKIGMEA PhylomeDB:Q9M120
            ProtClustDB:CLSN2685516 ArrayExpress:Q9M120 Genevestigator:Q9M120
            Uniprot:Q9M120
        Length = 288

 Score = 191 (72.3 bits), Expect = 9.7e-13, P = 9.7e-13
 Identities = 43/112 (38%), Positives = 68/112 (60%)

Query:   166 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGL-LYM 224
             R + + I ++A +  VW+V+T YE L + +P L +S+++ +E N+VR+ Q G + L L +
Sbjct:   115 RRIRSKIGMEASLDSVWSVLTDYEKLSDFIPGLVVSELVEKEGNRVRLFQMGQQNLALGL 174

Query:   225 VLHARVVMDICEQ------H--EQEISFEQVEGDFDSFQGKWLFEQL--GSH 266
               +A+ V+D  E+      H   +EI F+ VEGDF  F+GKW  EQL  G H
Sbjct:   175 KFNAKAVLDCYEKELEVLPHGRRREIDFKMVEGDFQLFEGKWSIEQLDKGIH 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      554       521   0.00090  119 3  11 22  0.40    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  325 KB (2164 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  42.45u 0.13s 42.58t   Elapsed:  00:00:02
  Total cpu time:  42.45u 0.13s 42.58t   Elapsed:  00:00:02
  Start:  Fri May 10 21:03:11 2013   End:  Fri May 10 21:03:13 2013

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