BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008769
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TVR|A Chain A, Crystal Structure Of Streptomyces Coelicolor Polyketide
AromataseCYCLASE WHIE-Orfvi
Length = 173
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 172 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 228
IT+ AP+ VWN+ E P + A ++L R+++KV + G ++ +
Sbjct: 23 ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 82
Query: 229 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 287
RV + + + ++VE G F W + + + T+++++ + M+ ++ + +A
Sbjct: 83 RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 137
Query: 288 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 319
M + I + + + IRD +E+ G+ A+
Sbjct: 138 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 169
>pdb|3TL1|A Chain A, Crystal Structure Of The Streptomyces Coelicolor Whie
Orfvi Polyketide AromataseCYCLASE
pdb|3TL1|B Chain B, Crystal Structure Of The Streptomyces Coelicolor Whie
Orfvi Polyketide AromataseCYCLASE
Length = 159
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 172 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 228
IT+ AP+ VWN+ E P + A ++L R+++KV + G ++ +
Sbjct: 9 ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 68
Query: 229 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 287
RV + + + ++VE G F W + + + T+++++ + M+ ++ + +A
Sbjct: 69 RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 123
Query: 288 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 319
M + I + + + IRD +E+ G+ A+
Sbjct: 124 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 155
>pdb|2KF2|A Chain A, Solution Nmr Structure Of Of Streptomyces Coelicolor
Polyketide Cyclase Sco5315. Northeast Structural
Genomics Consortium Target Rr365
Length = 167
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 172 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 228
IT+ AP+ VW + E P + A ++L R+++KV + G ++ +
Sbjct: 9 ITIAAPMELVWTMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 68
Query: 229 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 287
RV + + + ++VE G F W + + + T+++++ + M+ ++ + +A
Sbjct: 69 RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 123
Query: 288 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 319
M + I + + + IRD +E+ G+ A+
Sbjct: 124 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 155
>pdb|3RCO|A Chain A, Crystal Structure Of A Conserved Motif In Human Tdrd7
pdb|3RCO|B Chain B, Crystal Structure Of A Conserved Motif In Human Tdrd7
Length = 89
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 219 KGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWL-FEQLG 264
+G+L L ++++ + + H+ ++ +++G++ S G W+ F+QLG
Sbjct: 6 QGMLEGDLVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPFKQLG 52
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 16 KSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF------GWN 69
+S R S ++ E+ P +F+ RSD L A A RA SF GW
Sbjct: 224 RSNIRKSYDSVIRELLQKPNARVVVLFM----RSDDSRELIAAASRANASFTWVASDGWG 279
Query: 70 QKIPMIKNS----FGELSLPILASPSLDFD 95
+ +IK S +G ++L + + P FD
Sbjct: 280 AQESIIKGSEHVAYGAITLELASQPVRQFD 309
>pdb|2RES|A Chain A, Tetracenomycin AroCYC MUTANT R69A
Length = 173
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 171 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 209
SI V AP VW+V E PE+ A ++IL ++ +
Sbjct: 11 SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGD 49
>pdb|3TVQ|A Chain A, Crystal Structure Of Tcm AroCYC COMPLEXED WITH
TRANS-Dihidroquercetin
Length = 169
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 171 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 209
SI V AP VW+V E PE+ A ++IL ++ +
Sbjct: 8 SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGD 46
>pdb|2RER|A Chain A, Crystal Structure Of The AromataseCYCLASE DOMAIN OF TCMN
From Streptomyces Glaucescens
Length = 173
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 171 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 209
SI V AP VW+V E PE+ A ++IL ++ +
Sbjct: 11 SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGD 49
>pdb|2REZ|A Chain A, Tetracenomycin Aro/cyc Nai Structure
Length = 157
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 171 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 209
SI V AP VW+V E PE+ A ++IL ++ +
Sbjct: 11 SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGD 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,198,719
Number of Sequences: 62578
Number of extensions: 646323
Number of successful extensions: 1522
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1515
Number of HSP's gapped (non-prelim): 10
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)