BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008769
         (554 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02572|CYPC_STRCN Putative polyketide cyclase OS=Streptomyces cyaneus GN=curF PE=4
           SV=1
          Length = 152

 Score = 43.9 bits (102), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 172 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 228
           IT+ APV  VW++    E  PE+    A  ++LSRE N V     +     G ++  +  
Sbjct: 9   ITIAAPVDLVWDMTNDLERWPELFSEYASCEVLSREANTVTFRLTMHPDENGKVWSWVSE 68

Query: 229 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 287
           R      ++ +  +   +VE G F+     W +E+     T + ++ +  M+ ++ + +A
Sbjct: 69  RTA----DREKLVVRARRVETGPFEYMNIVWEYEET-PDGTRMHWTQDFAMKPDAPVDDA 123

Query: 288 IMEEVIYEDLPSNLCAIRDYVEK 310
            M ++I  + P  +  IRD +E+
Sbjct: 124 GMTDIINRNSPIQMALIRDRIEE 146


>sp|P23154|CYPC_STRCO Putative polyketide cyclase OS=Streptomyces coelicolor (strain ATCC
           BAA-471 / A3(2) / M145) GN=SCO5315 PE=1 SV=1
          Length = 159

 Score = 42.4 bits (98), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 9/152 (5%)

Query: 172 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 228
           IT+ AP+  VWN+    E  P +    A  ++L R+++KV     +     G ++  +  
Sbjct: 9   ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSE 68

Query: 229 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA 287
           RV   +     + +  ++VE G F      W + +  +  T+++++ +  M+ ++ + +A
Sbjct: 69  RVADPV----TRTVRAQRVETGPFQYMNIVWEYAET-AEGTVMRWTQDFAMKPDAPVDDA 123

Query: 288 IMEEVIYEDLPSNLCAIRDYVEKREGDNSLAN 319
            M + I  +  + +  IRD +E+  G+   A+
Sbjct: 124 WMTDNINRNSRTQMALIRDRIEQAAGERRTAS 155


>sp|P48840|AGAB_VIBS7 Beta-agarase B OS=Vibrio sp. (strain JT0107) GN=agaB PE=3 SV=1
          Length = 955

 Score = 35.0 bits (79), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 13/80 (16%)

Query: 87  LASPSLDFDGGLPE--KGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDRP 144
           L +P  D+ G  PE  KG AP+     +++S N       + DLNSK G + ++  LD+P
Sbjct: 805 LGAPFADW-GVTPEIAKGAAPY----VDVMSYNL-----YAEDLNSK-GDWSKLAELDKP 853

Query: 145 CFVDEVHLRRFDGLLENGGV 164
             + E H    D  L +GG+
Sbjct: 854 SIIGEFHFGSTDSGLFHGGI 873


>sp|Q05368|CYPC_STRHA Putative polyketide cyclase (Fragment) OS=Streptomyces halstedii
           GN=sch4 PE=4 SV=1
          Length = 109

 Score = 33.9 bits (76), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 172 ITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLHA 228
           I + AP+  VW++    E  P +    A ++IL RE ++VR    +    +G ++  +  
Sbjct: 9   IVIAAPLDLVWDMTNDVENWPRLFSEYASAEILEREGDRVRFRLTMHPDDEGRVWSWVSE 68

Query: 229 RVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQ 262
           RV     ++    +   +VE G F     +W++EQ
Sbjct: 69  RVA----DRASLTVRAHRVETGPFQFMDIQWVYEQ 99


>sp|O13651|SYIC_SCHPO Isoleucine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=irs1 PE=3 SV=1
          Length = 1064

 Score = 33.5 bits (75), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 167 CVVASITVKAPVSEVWNVMTAYETLPE-----IVPNLAISKILSRENNKVRILQEGCKGL 221
            VVA  ++  P        T   TLP      + P+L   KIL +++NK  IL E C G+
Sbjct: 200 IVVAFQSISDPEVSFLAWTTTPWTLPSNLALAVHPDLQYIKILDKDSNKKYILMESCLGI 259

Query: 222 LY 223
           LY
Sbjct: 260 LY 261


>sp|O43013|YBOE_SCHPO Uncharacterized protein C2G2.14 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPBC2G2.14 PE=1 SV=1
          Length = 533

 Score = 32.3 bits (72), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 422 ASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMP-----SRKSFERAGRY 476
           +SL N   +    + K   +NL++L+E IS  +RS  + PSF P     S     R+   
Sbjct: 185 SSLTNPEFSILVERLKSIEENLQSLQERISHCERSVSLSPSFAPPSNVKSPVQQHRSFVS 244

Query: 477 DIARALEKWG 486
             ARA + WG
Sbjct: 245 SSARAKKNWG 254


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,093,055
Number of Sequences: 539616
Number of extensions: 9179354
Number of successful extensions: 29749
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 29151
Number of HSP's gapped (non-prelim): 583
length of query: 554
length of database: 191,569,459
effective HSP length: 123
effective length of query: 431
effective length of database: 125,196,691
effective search space: 53959773821
effective search space used: 53959773821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)